isoform	chrom	strand	length	exons	structural_category	associated_gene	associated_transcript	ref_length	ref_exons	diff_to_TSS	diff_to_TTS	diff_to_gene_TSS	diff_to_gene_TTS	subcategory	RTS_stage	all_canonical	min_sample_cov	min_cov	min_cov_pos	sd_cov	FL	n_indels	n_indels_junc	bite	iso_exp	gene_exp	ratio_exp	FSM_class	coding	ORF_length	CDS_length	CDS_start	CDS_end	CDS_genomic_start	CDS_genomic_end	predicted_NMD	perc_A_downstream_TTS	seq_A_downstream_TTS	dist_to_cage_peak	within_cage_peak	pos_cage_peak	dist_to_polya_site	within_polya_site	polyA_motif	polyA_dist	ORF_seq	TSS_genomic_coord	TTS_genomic_coord	experiment_id	entry_id	LRGASP_id
transcript_1.known	ERCC-00002	+	1045	1	FSM	ERCC-00002A	DQ459430	1045	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10851	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1045	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00002_+_0_1000
transcript_10.known	ERCC-00034	+	1003	1	FSM	ERCC-00034A	DQ855001	1003	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00034_+_0_1000
transcript_100.known	SIRV3	-	479	3	FSM	SIRV3B	SIRV308	479	3	0	0	0	0	multi-exon	FALSE	canonical	3	5391	junction_1	17	632	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTATTTGTATGGCGGA	NA	False	NA	NA	False	NA	NA	NA	1982	1000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV3_-_1168_1532_1765_1902
transcript_10005.nnic	chr11	+	2734	11	NNC	ENSMUSG00000034773.17	novel	2813	11	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	126.309144562062	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTCCCACACCTCCT	NA	False	NA	15	True	AATAAA	-22	NA	102139676	102156013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_102139919_102141504_102141556_102145289_102145446_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
transcript_10007.known	chr11	+	2547	10	FSM	ENSMUSG00000034773.17	ENSMUST00000100392.5	2547	10	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_3	21.1502561056204	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTCCCACACCTCCT	NA	False	NA	15	True	AATAAA	-22	NA	102139707	102156013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_102139919_102141504_102141556_102145779_102146848_102148712_102148797_102150145_102150287_102150659_102150769_102150904_102150991_102151316_102151443_102153008_102153127_102155460
transcript_10015.nnic	chr11	+	2064	4	NNC	ENSMUSG00000034768.5	novel	2843	5	NA	NA	7720	-4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	22.0504472113883	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACGTGTGGACATTGTAG	3435	False	NA	NA	False	AATAAA	-17	NA	102167288	102170284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_102167698_102168003_102168118_102168701_102168940_102168981
transcript_10017.known	chr11	+	1939	4	FSM	ENSMUSG00000034757.16	ENSMUST00000036376.13	1939	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	22.5437845585479	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTCTTTGTGACTGC	NA	False	NA	16	True	AATAAA	-18	NA	102175756	102180063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_102175915_102176489_102176545_102178133_102178698_102178901
transcript_10018.known	chr11	+	1876	3	FSM	ENSMUSG00000034757.16	ENSMUST00000100387.11	1876	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	44	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTCTTTGTGACTGC	NA	False	NA	16	True	AATAAA	-18	NA	102175764	102180063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_102175915_102178133_102178698_102178901
transcript_10019.known	chr11	+	2249	3	FSM	ENSMUSG00000034757.16	ENSMUST00000156326.2	2249	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	18.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGCCTCTTTGTGACTGC	NA	False	NA	16	True	AATAAA	-18	NA	102176021	102180063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_102176545_102178133_102178698_102178901
transcript_10020.known	chr11	-	2759	21	FSM	ENSMUSG00000020923.18	ENSMUST00000107123.10	2759	21	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_20	173.298954122637	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGGGTGGGAGAGAGTCT	8206	False	NA	NA	False	NA	NA	NA	102208461	102197123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102208407
transcript_10021.nnic	chr11	-	3170	21	NNC	ENSMUSG00000020923.18	novel	4692	21	NA	NA	358	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_20	179.182274513971	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTCGGCTGCCGTCTCTG	9365	False	NA	-9	True	NA	NA	NA	102209564	102196818	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102209404
transcript_10022.known	chr11	-	4692	21	FSM	ENSMUSG00000020923.18	ENSMUST00000174302.8	4692	21	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_20	166.063624855054	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCGTCTGGTCACTGGAA	9007	False	NA	34	True	AATAAA	-20	NA	102209922	102195385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174_102207300_102209673
transcript_10023.known	chr11	-	3286	20	FSM	ENSMUSG00000020923.18	ENSMUST00000079589.11	3286	20	0	0	0	0	multi-exon	FALSE	canonical	3	503	junction_14	97.0817686596932	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGTCTA	9161	False	NA	60	True	NA	NA	NA	102207506	102196749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102201751_102201863_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
transcript_10024.known	chr11	-	3199	19	FSM	ENSMUSG00000020923.18	ENSMUST00000107115.8	3199	19	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_13	159.309621666601	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGGTCTA	9137	False	NA	60	True	NA	NA	NA	102207530	102196749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102197593_102197681_102197826_102197904_102197977_102198069_102198118_102198774_102198965_102199054_102199144_102199524_102199636_102199719_102199876_102200222_102200379_102200479_102200594_102200693_102200736_102201016_102201159_102201268_102201403_102202205_102202327_102202579_102202645_102204723_102204880_102204964_102205049_102205689_102205866_102207174
transcript_10028.known	chr11	+	1837	11	FSM	ENSMUSG00000006575.15	ENSMUST00000107102.8	1837	11	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_10	57.4930430573996	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGGGGAGACAGAGACAT	7409	False	NA	11	True	NA	NA	NA	102284228	102292580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_102284609_102288396_102288513_102288910_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292214
transcript_10029.known	chr11	+	2046	11	FSM	ENSMUSG00000006575.15	ENSMUST00000006750.8	2046	11	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_7	30.0134969638661	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTTCATCTGTTGGAGA	7409	False	NA	14	True	AATAAA	-16	NA	102284228	102293381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_102284609_102288396_102288513_102288910_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292806
transcript_10030.known	chr11	+	1822	11	FSM	ENSMUSG00000006575.15	ENSMUST00000107103.8	1822	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	76.5477628673758	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGGGGAGACAGAGACAT	7409	False	NA	11	True	NA	NA	NA	102284228	102292580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_102284609_102288396_102288513_102288925_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292214
transcript_10031.nic	chr11	+	1644	10	NIC	ENSMUSG00000006575.15	novel	2046	11	NA	NA	-286	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	66.4747236841861	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTTCATCTGTTGGAGA	3197	False	NA	14	True	AATAAA	-16	NA	102288403	102293381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_102288513_102288925_102289060_102289202_102289289_102290020_102290111_102290208_102290290_102290440_102290607_102290713_102290872_102291486_102291625_102291719_102291827_102292806
transcript_10034.known	chr11	-	1606	12	FSM	ENSMUSG00000018677.10	ENSMUST00000107098.8	1606	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	1380.93231173247	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAACCAA	7743	False	NA	NA	False	NA	NA	NA	102298315	102293810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296629_102297031_102297077_102297187_102297248_102297380_102297481_102298215
transcript_10040.known	chr11	-	1685	12	FSM	ENSMUSG00000018677.10	ENSMUST00000018821.9	1685	12	0	0	0	0	multi-exon	FALSE	canonical	3	4398	junction_3	174.765959202208	1208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAACCAA	7688	False	NA	NA	False	NA	NA	NA	102298370	102293810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
transcript_10041.nic	chr11	-	2147	12	NIC	ENSMUSG00000018677.10	novel	1685	12	NA	NA	-608	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_11	1345.10671179491	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGCTGTAGTGTC	6678	False	NA	95	True	NA	NA	NA	102299380	102293970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_102294362_102294458_102294540_102294616_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298603
transcript_10046.known	chr11	-	1564	11	FSM	ENSMUSG00000018677.10	ENSMUST00000153395.8	1564	11	0	0	0	0	multi-exon	FALSE	canonical	3	4398	junction_2	183.250211459632	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTGTGGCTGTAGTGTC	7726	False	NA	95	True	NA	NA	NA	102298332	102293970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102294362_102294458_102294699_102294856_102294967_102295277_102295452_102295620_102295746_102295837_102295906_102296518_102296653_102297031_102297077_102297187_102297248_102297380_102297481_102298215
transcript_10055.known	chr11	+	2331	13	FSM	ENSMUSG00000034708.13	ENSMUST00000049460.12	2331	13	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_1	53.84932682959	699	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGTATCTGATTTGTTGC	4138	False	NA	15	True	AATAAA	-17	NA	102321147	102327633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_102321367_102323790_102323936_102324050_102324177_102324311_102324397_102324761_102324872_102324967_102325104_102325225_102325336_102325528_102325653_102325884_102325983_102326071_102326318_102326534_102326769_102326849_102327075_102327160
transcript_1006.known	chr1	-	1175	6	FSM	ENSMUSG00000026035.16	ENSMUST00000114345.9	1175	6	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_5	38.958439393795	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTACCAGGACATATTTG	NA	False	NA	NA	False	AATAAA	-16	NA	58484528	58472945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484304
transcript_10068.known	chr11	-	6871	8	FSM	ENSMUSG00000034621.15	ENSMUST00000143842.2	6871	8	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	22.9658131018384	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTGGAGTCTGTTGTGA	637	False	NA	-3	True	AATAAA	-18	NA	102447025	102366740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102372914_102378325_102378457_102391628_102391773_102398268_102398356_102398969_102399038_102418919_102418993_102429107_102429183_102446905
transcript_10071.nnic	chr11	-	819	7	NNC	ENSMUSG00000034621.15	novel	390	6	NA	NA	30	10073	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	58.3628496753048	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACTCGGCTTAAACTTTC	474	False	NA	NA	False	AATAAA	-7	NA	102447188	102388246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_102388336_102391628_102391773_102398268_102398356_102398969_102399038_102418919_102418993_102429107_102429183_102446905
transcript_10072.known	chr11	-	893	2	FSM	ENSMUSG00000034621.15	ENSMUST00000125754.2	893	2	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTAATGATACCAAGCCAG	444	False	NA	NA	False	NA	NA	NA	102447218	102428602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102429183_102446905
transcript_10078.known	chr11	-	796	4	FSM	ENSMUSG00000078640.10	ENSMUST00000139829.2	796	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	2.16024689946929	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTAAACTATTTTCATAT	4	True	NA	NA	False	NA	NA	NA	102470101	102467269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102467624_102467724_102467906_102469575_102469722_102469986
transcript_1008.known	chr1	-	391	6	FSM	ENSMUSG00000026035.16	ENSMUST00000190048.7	391	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	79.4883639283134	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCCCAAATACCAATGGAT	NA	False	NA	-87	True	NA	NA	NA	58484598	58473573	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484530
transcript_10081.known	chr11	-	818	3	FSM	ENSMUSG00000078640.10	ENSMUST00000107081.8	818	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	3.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTCTTTTTTTTT	8238	False	NA	NA	False	NA	NA	NA	102470287	102467223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102467624_102469575_102469722_102470015
transcript_10083.known	chr11	-	2366	5	FSM	ENSMUSG00000020925.17	ENSMUST00000092569.13	2366	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	239.593405585379	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTTCTGTCTTGTTCTTT	NA	False	NA	-4	True	AATAAA	-16	NA	102588608	102575511	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102577323_102579626_102579686_102581026_102581163_102582936_102583025_102588336
transcript_10086.known	chr11	-	407	4	FSM	ENSMUSG00000020925.17	ENSMUST00000124869.8	407	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	267.304237818175	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGACACAGAAAGGCGAAC	NA	False	NA	14	True	NA	NA	NA	102588362	102577165	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102577323_102581026_102581163_102582936_102583025_102588336
transcript_10088.known	chr11	-	989	4	FSM	ENSMUSG00000020925.17	ENSMUST00000153157.8	989	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	267.304237818175	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGCTTCTTGTTGGGT	NA	False	NA	NA	False	NA	NA	NA	102588560	102579144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102579686_102581026_102581163_102582936_102583025_102588336
transcript_10089.known	chr11	-	875	3	FSM	ENSMUSG00000020925.17	ENSMUST00000138147.2	875	3	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_2	39	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTAAATCTCGTGCAAGAC	NA	False	NA	NA	False	NA	NA	NA	102588496	102580535	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102581163_102582936_102583025_102588336
transcript_1009.known	chr1	-	392	6	FSM	ENSMUSG00000026035.16	ENSMUST00000185990.2	392	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_5	65.3066612222674	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAATGGCCCAAATACCAAT	NA	False	NA	-91	True	NA	NA	NA	58484641	58473577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484568
transcript_10092.nnic	chr11	-	2041	4	NNC	ENSMUSG00000034520.15	novel	2314	3	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_3	328.11515593699	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTTAAAGGGTAATGT	NA	False	NA	-8	True	ATTAAA	-22	NA	102710001	102690404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_102692022_102693666_102693743_102695106_102695339_102709885
transcript_10094.known	chr11	-	1890	3	FSM	ENSMUSG00000034520.15	ENSMUST00000092567.11	1890	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	376	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGTTAAAGGGTAATGT	NA	False	NA	-8	True	ATTAAA	-22	NA	102710526	102690404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102692022_102693666_102693743_102710329
transcript_10095.known	chr11	-	247	3	FSM	ENSMUSG00000034520.15	ENSMUST00000131164.2	247	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	360	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGTTGGAGCTTCCTGAC	NA	False	NA	NA	False	NA	NA	NA	102710036	102692001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102692022_102693666_102693743_102709885
transcript_10097.known	chr11	-	3324	28	FSM	ENSMUSG00000020929.15	ENSMUST00000021306.14	3324	28	0	0	0	0	multi-exon	TRUE	canonical	3	142	junction_26	264.162864923118	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGGTTTGCTGCTTTC	8466	False	NA	-5	True	TATAAA	-22	NA	102771793	102729298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762012_102768435_102768545_102771720
transcript_101.known	SIRV3	-	589	3	FSM	SIRV3C	SIRV310	589	3	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_2	66	526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCTTGGTTTTGGGTACT	NA	False	NA	NA	False	NA	NA	NA	9914	8759	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV3_-_8967_9189_9325_9667
transcript_10108.known	chr11	-	3339	28	FSM	ENSMUSG00000020929.15	ENSMUST00000107060.8	3339	28	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_26	289.083827865911	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGGTTTGCTGCTTTC	8448	False	NA	-5	True	TATAAA	-22	NA	102771811	102729298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102729723_102729975_102730084_102730245_102730400_102730849_102730945_102731089_102731209_102731995_102732084_102732226_102732354_102732507_102732595_102734175_102734259_102734965_102735068_102736921_102737063_102737410_102737523_102738783_102738978_102740009_102740138_102742582_102742719_102745604_102745696_102746049_102746114_102750827_102750953_102753436_102753604_102755533_102755617_102756395_102756487_102758671_102758708_102759412_102759479_102759920_102759997_102760993_102761073_102761845_102762009_102768435_102768545_102771720
transcript_10109.known	chr11	+	1841	5	FSM	ENSMUSG00000020930.10	ENSMUST00000021307.10	1841	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.82915619758885	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCGCCTCTGCAGTTCAC	NA	False	NA	NA	False	AATAAA	-16	NA	102772029	102776042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_102772142_102773177_102773258_102773370_102773523_102773899_102774033_102774678
transcript_10110.known	chr11	-	3326	16	FSM	ENSMUSG00000051378.11	ENSMUST00000021311.10	3326	16	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_10	31.928809700471	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTGGAAAGTTAGTGCT	3724	False	NA	-7	True	AATAAA	-32	NA	102815950	102796354	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102797103_102797321_102797408_102797821_102797903_102798938_102799465_102799712_102799919_102803179_102803296_102803745_102803915_102804275_102804377_102804509_102804585_102805075_102805253_102805364_102805563_102805640_102805752_102805975_102806081_102806368_102806527_102807014_102807342_102815808
transcript_10120.known	chr11	-	1744	5	FSM	ENSMUSG00000020935.9	ENSMUST00000021313.9	1744	5	0	0	0	0	multi-exon	FALSE	canonical	3	1121	junction_2	32.0965340808007	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAATTCCACTTGGCCT	8193	False	NA	-5	True	NA	NA	NA	102907994	102884872	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102885999_102888178_102888267_102890469_102890674_102890975_102891183_102907875
transcript_10121.known	chr11	+	449	3	FSM	ENSMUSG00000020936.9	ENSMUST00000135332.2	449	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	516.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAGAAAAAGAAACA	NA	False	NA	29	True	NA	NA	NA	102919015	102934024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_102919256_102919350_102919529_102933993
transcript_10123.known	chr11	-	3023	15	FSM	ENSMUSG00000020937.15	ENSMUST00000103077.2	3023	15	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_14	6.65168384389875	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTGTACCTTTCCACT	9409	False	NA	NA	False	AGTAAA	-2	NA	102992484	102961129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102961756_102961835_102961986_102962080_102962217_102962466_102962634_102964553_102964671_102965384_102965536_102965682_102965830_102967539_102967693_102968307_102968453_102968586_102968789_102969064_102969294_102970365_102970496_102971012_102971242_102971329_102971492_102992205
transcript_10129.known	chr11	+	2083	10	FSM	ENSMUSG00000056938.17	ENSMUST00000092559.13	2083	10	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	33.6455746177417	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	6	True	ATTAAA	-16	NA	102992507	103003026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_102992615_102993507_102993923_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
transcript_10130.nic	chr11	+	2111	10	NIC	ENSMUSG00000056938.17	novel	2083	10	NA	NA	-6	0	intron_retention	FALSE	canonical	3	44	junction_2	34.5350063944784	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCTGTCTGGGAACCCG	NA	False	NA	6	True	ATTAAA	-16	NA	102992528	103003026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_102992615_102993507_102993972_102994351_102994471_102994725_102994847_102994918_102994999_102995258_102995380_102995628_102995716_102996070_102996305_102996920_102997061_103002367
transcript_10131.known	chr11	+	654	3	FSM	ENSMUSG00000043372.13	ENSMUST00000124928.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	13	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGACAGTGATGGGCAAGGC	NA	False	NA	NA	False	NA	NA	NA	103024164	103029472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_103024249_103024857_103024968_103029012
transcript_10132.nnic	chr11	+	1164	3	NNC	ENSMUSG00000043372.13	novel	1221	3	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	13.5	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAGTGGCTACAATTGA	NA	False	NA	NA	False	ATTAAA	-18	NA	103024137	103030017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_103024190_103024860_103024968_103029012
transcript_10133.known	chr11	+	1910	3	FSM	ENSMUSG00000043372.13	ENSMUST00000062530.5	1910	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	11.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAGAACTTGTGGCCTG	NA	False	NA	-10	True	NA	NA	NA	103024170	103030702	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_103024284_103024860_103024968_103029012
transcript_10134.known	chr11	-	1199	10	FSM	ENSMUSG00000020940.14	ENSMUST00000021323.11	1199	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	6.89605362185907	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGCTGCGCCTAGTGGGA	2261	False	NA	NA	False	AGTAAA	-17	NA	103099374	103089769	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_103089945_103090143_103090297_103090472_103090649_103090888_103091010_103091093_103091166_103091616_103091761_103091921_103091969_103092089_103092315_103092542_103092589_103099334
transcript_10135.known	chr11	-	3976	16	ISM	ENSMUSG00000034255.19	ENSMUST00000107024.9	4261	18	2507	0	2507	0	3prime_fragment	TRUE	canonical	2	3	junction_6	4.91075916285411	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGGCGAATGTACTCTGG	NA	False	NA	0	True	NA	NA	NA	103251726	103222322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_103223867_103223976_103224083_103224170_103224306_103224396_103224475_103224665_103224765_103224836_103224960_103225083_103225190_103226026_103226126_103228550_103228656_103229132_103229224_103229513_103229582_103229850_103229935_103230021_103230103_103230280_103230464_103230810_103231231_103251072
transcript_10137.known	chr11	-	3266	6	FSM	ENSMUSG00000020946.14	ENSMUST00000021329.14	3266	6	0	0	0	0	multi-exon	TRUE	canonical	3	264	junction_1	54.6867442804927	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTTGGCATTCTTTGTCT	NA	False	NA	2	True	AATAAA	-31	NA	103588724	103567674	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103580080_103580146_103588455
transcript_1014.nic	chr1	-	1028	5	ISM	ENSMUSG00000026037.15	ENSMUST00000027198.12	3561	18	147	34155	-7	3420	5prime_fragment	FALSE	canonical	3	463	junction_4	49.266494699745	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGTTAGTC	NA	False	NA	NA	False	NA	NA	NA	58544121	58536084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
transcript_10142.known	chr11	-	917	5	FSM	ENSMUSG00000020946.14	ENSMUST00000145265.2	917	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	142.958910180513	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGGTGAGGCTTTTACA	NA	False	NA	NA	False	NA	NA	NA	103588524	103569758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_103570224_103574617_103574759_103577407_103577541_103578350_103578460_103588455
transcript_10143.known	chr11	-	1044	5	FSM	ENSMUSG00000020946.14	ENSMUST00000107013.3	1044	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	134.545531326759	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTGGAAGCAGCTACTC	NA	False	NA	NA	False	AAGAAA	-40	NA	103588520	103569551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_103570224_103577407_103577541_103578350_103578460_103580080_103580146_103588455
transcript_10149.known	chr11	+	3076	5	FSM	ENSMUSG00000000125.6	ENSMUST00000000127.6	3076	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.4790199457749	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGAAAATCTATTTCATC	NA	False	NA	NA	False	NA	NA	NA	103664975	103708783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_103665175_103698975_103699218_103702153_103702420_103703106_103703595_103706902
transcript_10150.nic	chr11	+	1333	3	ISM	ENSMUSG00000000125.6	ENSMUST00000000127.6	3076	5	36933	1547	36933	-1547	3prime_fragment	FALSE	canonical	2	2	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTGGGCTAGTGTGAGC	4163	False	NA	NA	False	NA	NA	NA	103701908	103707236	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_103702420_103703106_103703595_103706902
transcript_10151.nic	chr11	-	3783	22	NIC	ENSMUSG00000034187.19	novel	3766	21	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_21	89.2116899491472	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTATAGACCAGTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	103844851	103712607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103821901_103821950_103844795
transcript_10154.known	chr11	-	3766	21	FSM	ENSMUSG00000034187.19	ENSMUST00000103075.11	3766	21	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_14	21.9246436687122	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTATAGACCAGTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	103844882	103712607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_103714086_103714564_103714621_103718036_103718151_103719257_103719393_103737199_103737280_103738819_103738887_103749720_103749855_103752718_103752876_103754064_103754161_103762984_103763173_103763416_103763492_103763970_103764137_103773567_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
transcript_10161.known	chr11	-	3212	9	FSM	ENSMUSG00000034187.19	ENSMUST00000145126.8	3212	9	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_2	26.9973957077345	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAACTAAAGAAGTAA	NA	False	NA	NA	False	NA	NA	NA	103844850	103771343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_103773768_103801268_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
transcript_10162.nic	chr11	-	1845	8	ISM	ENSMUSG00000034187.19	ENSMUST00000145126.8	3212	9	-40	28908	-8	0	5prime_fragment	FALSE	canonical	3	278	junction_1	26.1689955200923	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACCAG	NA	False	NA	NA	False	NA	NA	NA	103844890	103800251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_103801425_103804141_103804218_103804626_103804735_103807331_103807499_103816973_103817014_103819569_103819670_103821555_103821642_103844795
transcript_10163.known	chr11	+	2242	5	FSM	ENSMUSG00000062421.14	ENSMUST00000057921.10	2242	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	7.43303437365925	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTCATGTTCTCCTGGA	NA	False	NA	31	True	AATAAA	-20	NA	103857564	103876163	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_103857654_103859904_103860072_103863778_103863890_103872519_103872645_103874413
transcript_10169.known	chr11	+	5253	10	FSM	ENSMUSG00000018411.18	ENSMUST00000106992.10	5253	10	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	196.187551989303	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAATCTCTGTTCATGAG	NA	False	NA	NA	False	AATAAA	-19	NA	104122215	104222916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_104122434_104173193_104173307_104185684_104185751_104193186_104193237_104197451_104197585_104201094_104201361_104208982_104209076_104212176_104212259_104213253_104213367_104218797
transcript_1017.nnic	chr1	-	1244	11	NNC	ENSMUSG00000038174.15	novel	421	5	NA	NA	-4	-7574	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	8.71837140755084	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTCAAAACAGAGAACAATTG	NA	False	NA	NA	False	AATAAA	-16	NA	58625486	58575815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_58575985_58578717_58578806_58579292_58579410_58583825_58583922_58585265_58585382_58587797_58587879_58591308_58591489_58596430_58596533_58597135_58597217_58605015_58605114_58625370
transcript_1018.known	chr1	-	8685	12	FSM	ENSMUSG00000038174.15	ENSMUST00000161600.8	8685	12	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	5.70486235990445	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCTGAGTTGATTGTAT	NA	False	NA	1	True	TATAAA	-30	NA	58625482	58561964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_58569419_58574548_58574709_58578717_58578806_58579292_58579410_58583825_58583922_58585265_58585382_58587797_58587879_58591308_58591489_58596430_58596533_58597135_58597217_58605015_58605114_58625370
transcript_1019.known	chr1	+	763	3	FSM	ENSMUSG00000026032.9	ENSMUST00000027193.9	763	3	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_1	90.5	932	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTCCCTCTAACCTCA	NA	False	NA	52	True	AATAAA	-20	NA	58625542	58635123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_58625830_58630248_58630409_58634807
transcript_10192.nnic	chr11	+	1160	6	NNC	ENSMUSG00000018411.18	novel	779	5	NA	NA	-8396	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_3	204.272954646473	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGGGAAAAAAAAACATGTA	9460	False	NA	5	True	AATAAA	-9	NA	104200462	104219261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_104200605_104201094_104201361_104208982_104209076_104212176_104212259_104213253_104213367_104218797
transcript_102.known	SIRV3	-	796	3	FSM	SIRV3C	SIRV309	796	3	0	0	0	0	multi-exon	FALSE	canonical	3	1394	junction_2	16	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCTCAAATATCTGTGTC	NA	False	NA	NA	False	CATAAA	-21	NA	9943	8797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV3_-_8976_9189_9299_9434
transcript_1020.known	chr1	-	1540	15	FSM	ENSMUSG00000047528.14	ENSMUST00000055313.14	1540	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.61150202466835	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGGTGTCCTCTGTACT	NA	False	NA	NA	False	NA	NA	NA	58735112	58697278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_58697590_58698154_58698265_58698381_58698472_58700558_58700622_58705985_58706090_58706887_58706988_58708586_58708640_58709528_58709627_58715687_58715750_58717444_58717539_58719022_58719157_58730071_58730118_58730863_58730942_58731459_58731605_58735060
transcript_10200.nnic	chr11	+	873	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8396	0	at_least_one_novel_splicesite	FALSE	canonical	3	288	junction_1	100.158312186258	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	9460	False	NA	NA	False	NA	NA	NA	104200462	104219067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_104200605_104201094_104201361_104212176_104212259_104213253_104213367_104218797
transcript_10201.nnic	chr11	+	1067	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8396	0	at_least_one_novel_splicesite	FALSE	canonical	3	288	junction_1	100.158312186258	103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGGGAAAAAAAAACATGTA	9460	False	NA	5	True	AATAAA	-9	NA	104200462	104219261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_104200605_104201094_104201361_104212176_104212259_104213253_104213367_104218797
transcript_10202.nnic	chr11	+	2737	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8396	1670	at_least_one_novel_splicesite	FALSE	canonical	3	288	junction_1	100.158312186258	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAGAAAAAGGAAAA	9460	False	NA	NA	False	NA	NA	NA	104200462	104220931	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_104200605_104201094_104201361_104212176_104212259_104213253_104213367_104218797
transcript_10205.nnic	chr11	+	1003	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8386	0	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	201.516128386787	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGGGAAAAAAAAACATGTA	9470	False	NA	5	True	AATAAA	-9	NA	104200472	104219261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_104200551_104201094_104201361_104212176_104212259_104213253_104213367_104218797
transcript_10207.nnic	chr11	+	968	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8248	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	186.526640188473	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	9608	False	NA	NA	False	NA	NA	NA	104200610	104219067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_104200848_104201094_104201361_104212176_104212259_104213253_104213367_104218797
transcript_10208.nnic	chr11	+	1162	5	NNC	ENSMUSG00000018411.18	novel	831	2	NA	NA	-8248	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	186.526640188473	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGGGAAAAAAAAACATGTA	9608	False	NA	5	True	AATAAA	-9	NA	104200610	104219261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_104200848_104201094_104201361_104212176_104212259_104213253_104213367_104218797
transcript_10211.nic	chr11	+	569	4	ISM	ENSMUSG00000061086.13	ENSMUST00000123074.8	677	6	3973	-6	-666	0	3prime_fragment	FALSE	canonical	3	41	junction_3	1.69967317119759	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCGTTGATTTGTTTT	NA	False	NA	12	True	AATAAA	-26	NA	104475123	104478041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_104475439_104475762_104475841_104476552_104476598_104477910
transcript_10212.known	chr11	+	943	8	FSM	ENSMUSG00000061086.13	ENSMUST00000106957.8	943	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	21.1254754807014	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCGTTGATTTGTTTT	NA	False	NA	12	True	AATAAA	-26	NA	104467810	104478041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_104467994_104468246_104468401_104471227_104471256_104474803_104474954_104475264_104475439_104475762_104475841_104476552_104476598_104477910
transcript_10215.known	chr11	+	1867	9	FSM	ENSMUSG00000020691.14	ENSMUST00000021030.8	1867	9	0	0	0	0	multi-exon	TRUE	canonical	3	226	junction_6	21.0698243941424	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAATAAGAAA	NA	False	NA	NA	False	NA	NA	NA	105017250	105031220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_105017433_105017601_105017694_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
transcript_1022.nic	chr1	+	1883	6	ISM	ENSMUSG00000026031.16	ENSMUST00000097722.9	1771	11	-108	20749	-65	0	5prime_fragment	FALSE	canonical	0	0	junction_1	1.54919333848297	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTTGTGCATTTGCTTT	1195	False	NA	NA	False	NA	NA	NA	58750601	58772386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_58750752_58752729_58752819_58765464_58765892_58768214_58768321_58770310_58770447_58771411
transcript_10220.nnic	chr11	+	2482	9	NNC	ENSMUSG00000020691.14	novel	1867	9	NA	NA	22	752	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_2	81.7370020247868	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGGTGGTGTGGCTT	NA	False	NA	4	True	AATAAA	-14	NA	105017272	105031972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_105017433_105017601_105017694_105019681_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
transcript_10222.known	chr11	+	2556	8	FSM	ENSMUSG00000020691.14	ENSMUST00000136214.8	2556	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	88.9260183225015	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAATAAGAAA	NA	False	NA	NA	False	NA	NA	NA	105017304	105031220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_105018268_105019566_105019902_105021272_105021323_105022398_105022460_105023266_105023407_105026163_105026271_105028544_105028611_105030386
transcript_10229.nic	chr11	+	1695	2	ISM	ENSMUSG00000020691.14	ENSMUST00000021030.8	1867	9	22	12084	22	-7346	5prime_fragment	FALSE	canonical	3	278	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAACTTACAAG	NA	False	NA	NA	False	NA	NA	NA	105017272	105019136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_105017433_105017601
transcript_1023.known	chr1	+	2010	5	FSM	ENSMUSG00000026031.16	ENSMUST00000114309.8	2010	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.6393596310755	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTTTGTGCATTTGCTTT	3046	False	NA	NA	False	NA	NA	NA	58752452	58772386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_58752819_58765464_58765892_58768214_58768321_58770310_58770447_58771411
transcript_10230.known	chr11	+	831	3	FSM	ENSMUSG00000020695.15	ENSMUST00000126931.2	831	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAAGTGGCTCAGTGGAT	1497	False	NA	NA	False	AATAAA	-18	NA	105183468	105217717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_105183728_105216327_105216730_105217547
transcript_10232.nic	chr11	-	2776	7	NIC	ENSMUSG00000019590.17	novel	2741	6	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	64.1320252811859	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCCTTCTGTCTTCAT	NA	False	NA	-4	True	AATAAA	-15	NA	105834994	105824527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105830925_105831205_105834936
transcript_10233.nnic	chr11	-	2764	7	NNC	ENSMUSG00000019590.17	novel	2741	6	NA	NA	-556	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	70.9475549653091	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCCTTCTGTCTTCAT	NA	False	NA	-4	True	AATAAA	-15	NA	105835869	105824527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105830925_105831205_105835823
transcript_10234.nnic	chr11	-	2899	7	NNC	ENSMUSG00000019590.17	novel	2741	6	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	71.2524853367703	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCCTTCTGTCTTCAT	NA	False	NA	-4	True	AATAAA	-15	NA	105835000	105824527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105830925_105831322_105834936
transcript_10236.known	chr11	-	2741	6	FSM	ENSMUSG00000019590.17	ENSMUST00000019734.11	2741	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_5	37.6690854680599	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCCTTCTGTCTTCAT	NA	False	NA	-4	True	AATAAA	-15	NA	105835238	105824527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105834936
transcript_10237.nnic	chr11	-	2516	6	NNC	ENSMUSG00000019590.17	novel	2741	6	NA	NA	-587	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	67.416318499307	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTTGCCTTCTGTCTTCAT	NA	False	NA	-4	True	AATAAA	-15	NA	105835900	105824527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_105826394_105826577_105826736_105827007_105827112_105827380_105827480_105828454_105828667_105835823
transcript_10239.known	chr11	-	1130	6	FSM	ENSMUSG00000019590.17	ENSMUST00000184086.8	1130	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	71.4898594207598	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGAGCTAGACAATAGCTC	NA	False	NA	NA	False	NA	NA	NA	105834965	105825909	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_105826394_105826577_105826780_105827007_105827112_105827380_105827480_105828454_105828667_105834936
transcript_10242.known	chr11	+	5750	7	FSM	ENSMUSG00000049354.9	ENSMUST00000058438.9	5750	7	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_6	15.5527775297176	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTGTGATGAATTCA	4745	False	NA	15	True	AATAAA	-24	NA	105927697	105950150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_105928088_105937516_105937676_105938462_105938575_105938968_105939088_105942582_105942793_105944556_105944675_105945508
transcript_10243.known	chr11	+	1383	5	FSM	ENSMUSG00000001983.8	ENSMUST00000002048.8	1383	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	5.93717104351896	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCTTGAGGTGTCCTGA	874	False	NA	26	True	NA	NA	NA	105956886	105964438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_105957345_105960331_105960439_105962692_105962821_105963356_105963535_105963926
transcript_10245.known	chr11	+	3450	16	FSM	ENSMUSG00000020700.12	ENSMUST00000002044.10	3450	16	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	10.0066644459247	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCCAGTGCCCAGGGATG	192	False	NA	NA	False	NA	NA	NA	105975438	106046272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_105975760_105987816_105987939_106001569_106001611_106005009_106005110_106008315_106008430_106014611_106014733_106033250_106033385_106036511_106036586_106039390_106039459_106039639_106039733_106040307_106040500_106041095_106041245_106041834_106041967_106042443_106042574_106043042_106043221_106044791
transcript_10246.known	chr11	-	2950	5	FSM	ENSMUSG00000040699.14	ENSMUST00000045923.10	2950	5	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	24.7638849940796	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGCATGTCCACAGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	106050968	106047081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_106049660_106049760_106049901_106049987_106050033_106050173_106050269_106050876
transcript_10248.nnic	chr11	-	1245	5	NIC	ENSMUSG00000040699.14	novel	2950	5	NA	NA	329	273	combination_of_known_splicesites	FALSE	canonical	3	12	junction_4	112.144995430024	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGACTCTCTTGTGTGGC	NA	False	NA	-14	True	TTTAAA	-15	NA	106051357	106048866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_106049660_106049760_106049901_106049987_106050033_106050173_106050269_106051185
transcript_1025.known	chr1	+	2585	9	FSM	ENSMUSG00000026029.15	ENSMUST00000027189.15	2585	9	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_6	4.14578098794425	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAATTCTTCCAGGTTAG	2924	False	NA	NA	False	ATTAAA	-17	NA	58834532	58886662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_58834898_58863073_58863407_58866365_58866472_58868031_58868171_58868254_58868309_58870764_58870827_58872791_58872934_58883502_58884005_58885780
transcript_10250.known	chr11	-	2099	13	FSM	ENSMUSG00000069631.15	ENSMUST00000007444.14	2099	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	54.9804889635102	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATTAAAATTTTCAGAGA	NA	False	NA	-34	True	NA	NA	NA	106084362	106054176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106071780_106071810_106075387_106075446_106077926_106078007_106084291
transcript_10251.known	chr11	-	5193	13	FSM	ENSMUSG00000078622.9	ENSMUST00000002043.10	5193	13	0	0	0	0	multi-exon	FALSE	canonical	3	609	junction_6	38.2117637500402	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCTCATGGTTAGGCATC	NA	False	NA	NA	False	AATAGA	-32	NA	106107170	106088233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_106091843_106092836_106093005_106093209_106093320_106093553_106093613_106094363_106094450_106095746_106095858_106096185_106096288_106098831_106098898_106099020_106099143_106101113_106101289_106102498_106102607_106103906_106104188_106106974
transcript_1026.known	chr1	+	2960	12	FSM	ENSMUSG00000026027.14	ENSMUST00000027185.11	2960	12	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_7	10.2964328252857	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGTTTTCTTCATCTAT	NA	False	NA	NA	False	AATAAA	-15	NA	59012680	59034874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171_59030296_59031362_59031535_59031809_59031915_59032051_59032297_59032719_59032763_59033451
transcript_10260.nnic	chr11	-	2105	11	NIC	ENSMUSG00000069631.15	novel	2099	13	NA	NA	-36	0	combination_of_known_splicesites	TRUE	canonical	3	51	junction_9	25.5305699113827	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGGAATGGCACCAGTG	NA	False	NA	-13	True	ATTAAA	-13	NA	106084434	106054155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106077926_106078007_106084291
transcript_10263.known	chr11	-	1517	11	FSM	ENSMUSG00000069631.15	ENSMUST00000103072.10	1517	11	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_9	16.6340013225922	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATCACCAGGGACTTGGA	NA	False	NA	NA	False	NA	NA	NA	106084388	106054673	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061779_106061904_106061981_106062091_106064078_106064201_106064504_106064608_106077950_106078007_106084291
transcript_10266.nic	chr11	-	1957	10	NIC	ENSMUSG00000069631.15	novel	1517	11	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	39.0520387226462	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGGAATGGCACCAGTG	NA	False	NA	-13	True	ATTAAA	-13	NA	106084434	106054155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_106055018_106055256_106055300_106055545_106055788_106058637_106058743_106059134_106059307_106061981_106062091_106064078_106064201_106064504_106064608_106077950_106078007_106084291
transcript_10268.known	chr11	+	4011	18	FSM	ENSMUSG00000020705.7	ENSMUST00000021046.6	4011	18	0	0	0	0	multi-exon	FALSE	canonical	2	294	junction_3	62.7187383355908	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTTTATCTTTTTATT	NA	False	NA	28	True	ATTAAA	-15	NA	106107751	106139965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_106107983_106114906_106115145_106115609_106115761_106119588_106119651_106121155_106121193_106121957_106122108_106123631_106123737_106125677_106125798_106126432_106126610_106127820_106127950_106129333_106129434_106129961_106130010_106130827_106130926_106132376_106132654_106133700_106133928_106136152_106136264_106137601_106137704_106138317
transcript_1027.known	chr1	+	2070	11	FSM	ENSMUSG00000026027.14	ENSMUST00000123301.8	2070	11	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	23.192455669894	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGAGAAGATGCAATTT	NA	False	NA	NA	False	ATTAAA	-16	NA	59012680	59034156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_59013010_59016117_59016225_59019092_59019174_59024447_59024548_59027664_59027787_59028848_59028958_59030171_59030296_59031809_59031915_59032051_59032297_59032719_59032763_59033451
transcript_10274.nic	chr11	+	1145	4	ISM	ENSMUSG00000020705.7	ENSMUST00000021046.6	4011	18	-481	20333	-481	-10018	5prime_fragment	FALSE	canonical	2	294	junction_3	58.7329171381395	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAGAAAAAACGTCAAGT	NA	False	NA	NA	False	AAGAAA	-8	NA	106107270	106119632	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_106107983_106114906_106115145_106115609_106115761_106119588
transcript_10275.known	chr11	-	3144	21	FSM	ENSMUSG00000020706.14	ENSMUST00000021048.7	3144	21	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_7	76.5847732907789	401	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAACTTTTCTGATAGTTTA	NA	False	NA	-14	True	AATAAA	-13	NA	106146905	106139967	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_106140443_106140529_106140625_106140698_106140883_106140980_106141081_106141173_106141260_106141387_106141663_106141731_106141850_106141979_106142162_106143028_106143165_106143253_106143404_106143491_106143573_106143725_106143827_106143906_106144012_106144114_106144231_106144307_106144503_106144587_106144688_106145432_106145513_106145611_106145659_106146145_106146252_106146410_106146504_106146586
transcript_1029.known	chr1	-	2131	13	FSM	ENSMUSG00000072295.8	ENSMUST00000097080.4	2131	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	3.19722101554181	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAACATAGCACATATGT	NA	False	NA	NA	False	ATTAAA	-14	NA	59134059	59089664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_59090445_59091654_59091693_59097814_59097879_59099730_59099837_59101554_59101690_59105308_59105389_59106935_59107005_59107841_59107887_59108875_59109002_59114155_59114302_59115829_59115882_59117041_59117129_59133656
transcript_10292.known	chr11	+	1316	11	FSM	ENSMUSG00000020708.13	ENSMUST00000021049.9	1316	11	0	0	0	0	multi-exon	FALSE	canonical	3	2261	junction_6	178.766439803449	3113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4536	False	NA	15	True	AATAAA	-19	NA	106146979	106153946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153329_106153406_106153518_106153622_106153710_106153834
transcript_10297.known	chr11	+	1394	10	FSM	ENSMUSG00000020708.13	ENSMUST00000133131.2	1394	10	0	0	0	0	multi-exon	FALSE	canonical	3	2261	junction_6	179.113523556954	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACAACTCCAGTTTGTT	4536	False	NA	15	True	AATAAA	-19	NA	106146979	106153946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_106147041_106147673_106147746_106151678_106151749_106152010_106152109_106152248_106152537_106152731_106152859_106152943_106153135_106153229_106153518_106153622_106153710_106153834
transcript_103.known	SIRV3	+	1807	2	FSM	SIRV3A	SIRV302	1807	2	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	0	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1963	7822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV3_+_2006_6057
transcript_10311.known	chr11	-	862	5	FSM	ENSMUSG00000020713.7	ENSMUST00000103071.4	862	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.866025403784439	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCACCCGGCTAGAGGTC	7057	False	NA	NA	False	AATAAA	-14	NA	106192691	106191096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_106191393_106191590_106191753_106191920_106192038_106192221_106192383_106192565
transcript_10312.known	chr11	-	1195	6	FSM	ENSMUSG00000040592.12	ENSMUST00000167143.2	1195	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_4	7.4027022093287	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATCTTCGTGATATCAT	5089	False	NA	-3	True	AATAAA	-17	NA	106205355	106202169	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_106202732_106202832_106202875_106203147_106203267_106203458_106203768_106204486_106204538_106205243
transcript_10313.nic	chr11	-	1146	5	ISM	ENSMUSG00000040592.12	ENSMUST00000167143.2	1195	6	755	0	755	0	3prime_fragment	FALSE	canonical	3	38	junction_4	7.56637297521078	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATCTTCGTGATATCAT	5844	False	NA	-3	True	AATAAA	-17	NA	106204600	106202169	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_106202732_106202832_106202875_106203147_106203267_106203458_106203768_106204486
transcript_10316.nnic	chr11	-	3327	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9072	0	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_16	418.075950037789	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	352	False	NA	-10	True	AATAAA	-18	NA	106615292	106545043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
transcript_10317.nnic	chr11	-	3311	17	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9068	0	at_least_one_novel_splicesite	FALSE	canonical	3	387	junction_16	418.197765529361	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	356	False	NA	-10	True	AATAAA	-18	NA	106615288	106545043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_106545989_106552827_106552851_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615208
transcript_10327.nnic	chr11	-	3325	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9065	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_15	368.337888357959	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	359	False	NA	-10	True	AATAAA	-18	NA	106615285	106545043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
transcript_10328.nnic	chr11	-	3304	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9072	0	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_15	360.626097533473	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	352	False	NA	-10	True	AATAAA	-18	NA	106615292	106545043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
transcript_10329.nnic	chr11	-	3288	16	NNC	ENSMUSG00000020717.20	novel	3441	16	NA	NA	-9068	0	at_least_one_novel_splicesite	FALSE	canonical	3	387	junction_15	360.787927859136	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	356	False	NA	-10	True	AATAAA	-18	NA	106615288	106545043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615208
transcript_1033.known	chr1	-	1823	13	FSM	ENSMUSG00000038079.15	ENSMUST00000087475.11	1823	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	58.3887237020604	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAAGCTTTATTAACTG	4340	False	NA	-17	True	AATAAA	-17	NA	59158965	59139755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59156489_59156501_59157133_59157166_59158861
transcript_10334.nnic	chr11	-	3269	15	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9065	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_14	378.799506766483	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	359	False	NA	-9	True	AATAAA	-19	NA	106615285	106545042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615168
transcript_10335.nnic	chr11	-	3248	15	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9072	0	at_least_one_novel_splicesite	FALSE	canonical	3	388	junction_14	370.599266494863	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	352	False	NA	-9	True	AATAAA	-19	NA	106615292	106545042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
transcript_10336.nnic	chr11	-	3232	15	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9068	0	at_least_one_novel_splicesite	FALSE	canonical	3	387	junction_14	370.771513611985	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	356	False	NA	-9	True	AATAAA	-19	NA	106615288	106545042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_106545989_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615208
transcript_1034.known	chr1	-	1869	13	FSM	ENSMUSG00000038079.15	ENSMUST00000094917.10	1869	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	71.220851737551	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATTAACTGAAGGTTT	4052	False	NA	-10	True	AATAAA	-24	NA	59159253	59139748	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59156489_59156501_59157133_59157166_59159110
transcript_10340.nnic	chr11	-	3250	15	NNC	ENSMUSG00000020717.20	novel	3283	15	NA	NA	-9072	0	at_least_one_novel_splicesite	FALSE	canonical	3	239	junction_3	456.395913206765	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	352	False	NA	-10	True	AATAAA	-18	NA	106615292	106545043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_106545989_106562567_106562625_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
transcript_10346.nnic	chr11	-	3194	14	NNC	ENSMUSG00000020717.20	novel	3233	14	NA	NA	-9072	0	at_least_one_novel_splicesite	FALSE	canonical	3	239	junction_2	473.471167808096	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATCTGCATTCAAGTGTC	352	False	NA	-9	True	AATAAA	-19	NA	106615292	106545042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_106545989_106570374_106570438_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844_106606011_106615196
transcript_1035.nic	chr1	-	1845	13	NIC	ENSMUSG00000038079.15	novel	1869	13	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	71.3903588261982	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATTAACTGAAGGTTT	4031	False	NA	-10	True	AATAAA	-24	NA	59159274	59139748	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59156489_59156501_59157133_59157166_59159155
transcript_10353.known	chr11	-	3283	15	FSM	ENSMUSG00000020717.20	ENSMUST00000080853.11	3283	15	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_1	284.128393297029	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATCTGCATTCAAGTGT	9559	False	NA	-10	True	AATAAA	-18	NA	106606085	106545043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_106545989_106562567_106562625_106570374_106570438_106571857_106571912_106573705_106573780_106574418_106574447_106575053_106575162_106575786_106576075_106579601_106579878_106581761_106582011_106586579_106586856_106587877_106588181_106590417_106590712_106605727_106605755_106605844
transcript_10357.known	chr11	-	1506	8	FSM	ENSMUSG00000020718.13	ENSMUST00000021060.6	1506	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	14.9652659072089	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	4319	False	NA	NA	False	AATAAA	-33	NA	106670341	106659078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669784
transcript_10358.nic	chr11	-	1421	8	NIC	ENSMUSG00000020718.13	novel	1770	8	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_7	16.8001457719623	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	4279	False	NA	NA	False	AATAAA	-33	NA	106670381	106659078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106669909
transcript_10359.nnic	chr11	-	1112	8	NNC	ENSMUSG00000020718.13	novel	1770	8	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	20.9469689980217	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTTTGGACTTTTGTA	4288	False	NA	NA	False	AATAAA	-33	NA	106670372	106659078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_106659298_106663477_106663579_106664210_106664292_106664420_106664562_106666252_106666427_106667968_106668075_106668260_106668388_106670209
transcript_10365.nic	chr11	-	2518	14	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	3	89	junction_13	1103.10076146326	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	9225	False	NA	-9	True	AATAAA	-45	NA	106679749	106672373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679524
transcript_10367.nic	chr11	-	2467	14	NIC	ENSMUSG00000020719.15	novel	3559	13	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	497	junction_13	995.534526816042	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	8959	False	NA	-9	True	AATAAA	-45	NA	106680015	106672373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098_106679286_106679841
transcript_10370.known	chr11	-	3559	13	FSM	ENSMUSG00000020719.15	ENSMUST00000021062.12	3559	13	0	0	0	0	multi-exon	FALSE	canonical	3	3830	junction_8	158.443711526277	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTCATTTATTTATTC	9616	False	NA	-8	True	AATAAA	-18	NA	106679358	106671180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_106673083_106673294_106673520_106674784_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
transcript_10375.known	chr11	-	3593	12	FSM	ENSMUSG00000020719.15	ENSMUST00000133426.8	3593	12	0	0	0	0	multi-exon	FALSE	canonical	3	3830	junction_7	165.368159266449	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAAGTGAAATTGTACTT	9654	False	NA	-9	True	AATAAA	-45	NA	106679320	106672373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_106673083_106673294_106674845_106674926_106674989_106675239_106675351_106675705_106675879_106675961_106676123_106676220_106676363_106676892_106676959_106677051_106677186_106677273_106677371_106677734_106677901_106679098
transcript_10387.known	chr11	+	2696	20	FSM	ENSMUSG00000018372.14	ENSMUST00000018516.11	2696	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	15.3330523078346	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTTACTGCTTTTGAAT	5119	False	NA	10	True	AATAAA	-12	NA	106680100	106709679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_106680204_106681556_106681686_106683302_106683411_106686948_106687060_106690869_106690970_106692288_106692405_106695818_106695948_106697061_106697256_106700017_106700128_106700453_106700584_106702021_106702176_106703221_106703362_106704586_106704689_106705429_106705563_106706293_106706464_106706559_106706635_106707478_106707632_106708659_106708807_106709021_106709094_106709359
transcript_10389.known	chr11	-	2054	11	FSM	ENSMUSG00000018362.15	ENSMUST00000018506.13	2054	11	0	0	0	0	multi-exon	FALSE	canonical	3	2002	junction_5	417.039386629129	286	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTTTTCTTAATTGA	9666	False	NA	NA	False	AATAAA	-27	NA	106890367	106879454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_106879806_106880149_106880300_106881014_106881198_106881464_106881699_106881894_106882159_106882238_106882334_106882683_106882953_106883428_106883518_106887334_106887473_106888063_106888162_106890184
transcript_10392.known	chr11	+	1677	5	FSM	ENSMUSG00000078607.7	ENSMUST00000140447.4	1677	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAAGCACCTGGCTTTGCT	NA	False	NA	NA	False	AGTAAA	-16	NA	106916506	106921264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_106916580_106916696_106916796_106918635_106919095_106919191_106919384_106920410
transcript_10395.known	chr11	-	11488	28	FSM	ENSMUSG00000040481.18	ENSMUST00000057892.15	11488	28	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_24	20.9549781940023	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTGTCAGGTCAGATC	NA	False	NA	-6	True	AATAAA	-22	NA	107022748	106923906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_106926666_106931051_106931239_106933500_106933586_106934458_106934652_106937825_106938170_106943614_106943841_106944048_106944132_106945281_106946145_106946697_106946933_106949459_106949678_106951297_106951407_106952509_106952662_106953361_106953609_106956493_106956537_106956771_106956923_106957952_106958082_106959100_106959226_106963508_106965817_106967347_106967528_106968485_106968625_106969345_106969476_106971548_106971681_106972041_106972398_106973338_106973527_106986541_106986752_106990391_106990616_107001638_107002462_107022099
transcript_10396.known	chr11	-	3098	18	FSM	ENSMUSG00000018433.15	ENSMUST00000106757.8	3098	18	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_5	109.451004980994	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATGAAAATGTCTCTC	1101	False	NA	NA	False	TATAAA	-12	NA	107080207	107057488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064228_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
transcript_10397.known	chr11	-	3158	18	FSM	ENSMUSG00000018433.15	ENSMUST00000018577.8	3158	18	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_14	59.6645176908376	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAATGAAAATGTCTCTC	1101	False	NA	NA	False	TATAAA	-12	NA	107080207	107057488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064288_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
transcript_104.known	SIRV3	-	161	1	FSM	SIRV3D	SIRV311	161	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATATAAAGATTTCGACTT	NA	False	NA	NA	False	NA	NA	NA	4762	4601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV3_-_4600_4800
transcript_1040.known	chr1	-	2977	13	FSM	ENSMUSG00000026024.15	ENSMUST00000159166.8	2977	13	0	0	0	0	multi-exon	FALSE	canonical	2	94	junction_2	9.94847838728226	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTGGGCCCCATTAAGC	NA	False	NA	NA	False	NA	NA	NA	59276390	59230767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_59231211_59233191_59233258_59235349_59235531_59238178_59238351_59242073_59242257_59245677_59245756_59246918_59247016_59248107_59248277_59250289_59250648_59254260_59255181_59257085_59257241_59259533_59259612_59276313
transcript_10407.nnic	chr11	-	2630	16	NIC	ENSMUSG00000018433.15	novel	3158	18	NA	NA	28	-264	combination_of_known_splicesites	FALSE	canonical	2	34	junction_13	114.022142099194	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCTGCAAAACATCTCTG	1158	False	NA	NA	False	NA	NA	NA	107080150	107057752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_107058468_107059107_107059216_107061917_107062011_107062440_107062520_107064035_107064288_107064429_107064556_107066391_107066574_107067608_107067684_107069401_107069488_107069794_107069919_107070867_107070945_107071738_107071928_107072564_107072710_107077460_107077518_107077634_107077749_107079942
transcript_10409.nic	chr11	-	670	6	ISM	ENSMUSG00000018433.15	ENSMUST00000106757.8	3098	18	48	15146	19	-3273	5prime_fragment	FALSE	canonical	3	283	junction_2	76.478493709016	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAAAATCTGTTAAACC	1149	False	NA	NA	False	AATACA	-18	NA	107080159	107072634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_107072710_107074398_107074457_107075565_107075715_107077460_107077518_107077634_107077749_107079942
transcript_1041.nnic	chr1	-	1789	11	NIC	ENSMUSG00000038079.15	novel	1823	13	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_10	51.7934358775318	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATTAACTGAAGGTTT	4338	False	NA	-10	True	AATAAA	-24	NA	59158967	59139748	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_59140358_59144704_59144827_59145702_59145794_59146612_59146687_59147196_59147389_59147833_59147958_59148197_59148356_59149146_59149265_59153239_59153378_59155031_59155089_59158861
transcript_10410.nic	chr11	-	688	4	ISM	ENSMUSG00000018433.15	ENSMUST00000106757.8	3098	18	67	17907	38	1970	5prime_fragment	FALSE	canonical	3	456	junction_3	16.779617264871	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCCTAATTAAATCCCACT	1168	False	NA	NA	False	NA	NA	NA	107080140	107075395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_107075715_107077460_107077518_107077634_107077749_107079942
transcript_10411.known	chr11	-	6329	10	FSM	ENSMUSG00000040430.19	ENSMUST00000103064.10	6329	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	23.9495354216649	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGAGTGTAGCATCCTCT	NA	False	NA	-1	True	AATAAA	-17	NA	107361525	107098717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_107103485_107107503_107107623_107117056_107117121_107125172_107125329_107142847_107142944_107187024_107187097_107211618_107211627_107212412_107212502_107228237_107228387_107360716
transcript_10416.known	chr11	+	1904	11	FSM	ENSMUSG00000020720.14	ENSMUST00000021063.13	1904	11	0	0	0	0	multi-exon	FALSE	canonical	3	2673	junction_3	110.503800839609	1310	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTGCGTGGAGTTTGCT	NA	False	NA	NA	False	NA	NA	NA	107370309	107388999	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_107370511_107376375_107376436_107376533_107376663_107377239_107377348_107379793_107379899_107382606_107382757_107382842_107382978_107384228_107384342_107385455_107385631_107386513_107386592_107388349
transcript_10426.known	chr11	+	687	5	FSM	ENSMUSG00000020721.17	ENSMUST00000141730.8	687	5	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	30.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGAGCATTTAGAGTGAG	NA	False	NA	NA	False	NA	NA	NA	107438755	107468982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_107438808_107440171_107440228_107446344_107446402_107465763_107465992_107468688
transcript_10430.known	chr11	-	422	3	FSM	ENSMUSG00000020723.4	ENSMUST00000134076.2	422	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	3	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGTTTATTGTGGCGGA	NA	False	NA	NA	False	AAAAAG	-40	NA	107632905	107626022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_107626145_107627552_107627694_107632746
transcript_10433.known	chr11	+	3453	27	FSM	ENSMUSG00000020728.18	ENSMUST00000150863.9	3453	27	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_14	12.2793543958426	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTTCTTTTTACATT	NA	False	NA	NA	False	ATTAAA	-18	NA	108316017	108751441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_108316178_108324951_108325066_108328031_108328223_108331249_108331423_108361117_108361209_108362842_108362921_108377418_108377467_108377738_108377817_108389069_108389157_108393891_108393992_108397364_108397484_108399047_108399192_108409504_108409660_108409955_108410086_108410721_108410815_108414144_108414205_108422211_108422292_108461113_108461250_108481829_108481938_108497038_108497222_108555321_108555553_108643403_108643467_108648495_108648646_108699475_108699566_108746608_108746711_108750168_108750234_108751017
transcript_10437.nic	chr11	+	961	6	ISM	ENSMUSG00000020728.18	ENSMUST00000150863.9	3453	27	-63	388430	-63	-608	5prime_fragment	FALSE	canonical	3	43	junction_4	6.34350061086148	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTATTAAACGTTTATTA	NA	False	NA	NA	False	ATTAAA	-21	NA	108315954	108363011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_108316178_108324951_108325066_108328031_108328223_108331249_108331423_108361117_108361209_108362842
transcript_10438.nnic	chr11	-	1019	12	NNC	ENSMUSG00000020599.14	novel	2313	17	NA	NA	8442	7970	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	5.1889902519383	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTTTGTTTGATTTTAT	NA	False	NA	NA	False	TTTAAA	-42	NA	109180450	109138857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_109139004_109139804_109139867_109140852_109140883_109150661_109150725_109159748_109159831_109164101_109164179_109166086_109166146_109166404_109166457_109166645_109166753_109167395_109167447_109172274_109172372_109180257
transcript_10444.known	chr11	+	6160	4	FSM	ENSMUSG00000020611.15	ENSMUST00000020930.14	6160	4	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_2	46.1976430375211	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGTAGCACGACGTTATT	NA	False	NA	12	True	AATAAA	-14	NA	109253656	109292195	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_109254083_109256361_109256589_109283171_109283223_109286739
transcript_10446.known	chr11	+	914	3	FSM	ENSMUSG00000020611.15	ENSMUST00000106702.4	914	3	0	0	0	0	multi-exon	TRUE	canonical	3	100	junction_2	132.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTATGTCCTCTTTTGCA	NA	False	NA	9	True	AATAAA	-18	NA	109253656	109271301	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_109254083_109256361_109256589_109271040
transcript_10451.known	chr11	+	2816	9	FSM	ENSMUSG00000020610.18	ENSMUST00000092500.11	2816	9	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	26.8953411393126	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTCATTTCGCGTTCT	NA	False	NA	6	True	ATTAAA	-19	NA	109316771	109328974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_109316857_109317311_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
transcript_10455.known	chr11	+	1832	8	FSM	ENSMUSG00000020610.18	ENSMUST00000103061.3	1832	8	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	12.4638252063927	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTGGCCCTAGGAAT	NA	False	NA	19	True	AATAAA	-15	NA	109317051	109327815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749_109320879_109324715_109324880_109325405_109325583_109327388
transcript_10458.known	chr11	+	1846	6	FSM	ENSMUSG00000020610.18	ENSMUST00000125108.2	1846	6	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	32.499846153482	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAGAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	109316807	109321871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_109316857_109317311_109317402_109317795_109317924_109319627_109319911_109320489_109320664_109320749
transcript_1046.nic	chr1	-	1916	3	ISM	ENSMUSG00000026024.15	ENSMUST00000159166.8	2977	13	0	24712	0	23	5prime_fragment	FALSE	canonical	3	121	junction_2	3	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATTTTCATCTCATATC	NA	False	NA	NA	False	NA	NA	NA	59276390	59255479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_59257241_59259533_59259612_59276313
transcript_10461.known	chr11	-	2354	6	FSM	ENSMUSG00000041920.15	ENSMUST00000070872.13	2354	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	8.5463442476886	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACCCAAAAAACAAAAAAAAC	2874	False	NA	NA	False	NA	NA	NA	109364120	109343551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109363763
transcript_10462.nnic	chr11	-	2198	6	NNC	ENSMUSG00000041920.15	novel	2354	6	NA	NA	-1438	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	8.20731381147328	73	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACCCAAAAAACAAAAAAAAC	1132	False	NA	NA	False	NA	NA	NA	109365862	109343551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_109344221_109345688_109346505_109349302_109349432_109350624_109350769_109354135_109354375_109365661
transcript_10466.known	chr11	-	2050	13	FSM	ENSMUSG00000041895.16	ENSMUST00000103060.10	2050	13	0	0	0	0	multi-exon	FALSE	canonical	1	33	junction_5	23.2491039253846	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGAGTTGTTTACATTT	NA	False	NA	-6	True	AATAAA	-15	NA	109502258	109464156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_109464794_109467882_109467984_109468400_109468520_109469116_109469225_109470452_109470618_109473197_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
transcript_10468.known	chr11	-	3338	12	FSM	ENSMUSG00000041895.16	ENSMUST00000047186.10	3338	12	0	0	0	0	multi-exon	FALSE	canonical	1	33	junction_4	24.2817484087354	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109502258	109465957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_109467984_109468400_109468520_109469116_109469225_109470452_109470618_109473197_109473306_109473952_109474024_109474900_109474994_109475920_109476019_109487928_109488026_109494498_109494669_109496710_109496794_109502058
transcript_1047.known	chr1	-	6342	34	FSM	ENSMUSG00000026024.15	ENSMUST00000027178.13	6342	34	0	0	0	0	multi-exon	TRUE	canonical	2	89	junction_12	16.3968238094348	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTTCTATGACTGTGGAA	NA	False	NA	2	True	AATAAA	-20	NA	59276390	59202084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_59203375_59206341_59206439_59206621_59206772_59207309_59207372_59207547_59207594_59208995_59209173_59209595_59209719_59212314_59212473_59214082_59214201_59217690_59217859_59218218_59218353_59219264_59219343_59219707_59219820_59222322_59222488_59222939_59223039_59224371_59224438_59224555_59224759_59225170_59225238_59225614_59225686_59226479_59226609_59226893_59227026_59231047_59231211_59233191_59233258_59235349_59235531_59238178_59238351_59242073_59242257_59245677_59245756_59246918_59247016_59248107_59248277_59250289_59250648_59254260_59255181_59257085_59257241_59259533_59259612_59276313
transcript_10472.known	chr11	+	3513	12	FSM	ENSMUSG00000020612.17	ENSMUST00000106677.8	3513	12	0	0	0	0	multi-exon	TRUE	canonical	3	3	junction_1	598.701238977939	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGAATCAGTTTTTCTTC	NA	False	NA	20	True	AATAAA	-25	NA	109540230	109560482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_109540354_109541266_109541451_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
transcript_10474.known	chr11	+	3359	11	FSM	ENSMUSG00000020612.17	ENSMUST00000049527.7	3359	11	0	0	0	0	multi-exon	FALSE	canonical	3	1417	junction_9	119.858458191318	479	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACGAATCAGTTTTTCTTC	NA	False	NA	20	True	AATAAA	-25	NA	109541746	109560482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_109541900_109544604_109544788_109550824_109550996_109551860_109551953_109552113_109552176_109553101_109553149_109553774_109553934_109555584_109555646_109556690_109556813_109557469_109557552_109558255
transcript_1048.known	chr1	-	1215	5	FSM	ENSMUSG00000026021.16	ENSMUST00000091374.9	1215	5	0	0	0	0	multi-exon	FALSE	canonical	3	3231	junction_1	432.6531520745	1515	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGCTCCTTTTATTTTA	589	False	NA	0	True	AATAAA	-21	NA	59709993	59678592	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_59679428_59681576_59681649_59683675_59683754_59694616_59694692_59709838
transcript_10483.known	chr11	-	582	4	FSM	ENSMUSG00000020617.14	ENSMUST00000143578.2	582	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.816496580927726	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAACAATGAAATATAACG	NA	False	NA	NA	False	ATTAAA	-24	NA	109704900	109682423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_109682621_109688103_109688238_109704384_109704573_109704837
transcript_10484.known	chr11	+	2068	12	FSM	ENSMUSG00000020623.12	ENSMUST00000020949.12	2068	12	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_7	8.31308835611224	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGGCATAGTATTAGTG	NA	False	NA	14	True	AGTAAA	-24	NA	110289947	110404467	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_110290252_110373364_110373432_110380970_110381020_110381587_110381702_110383338_110383459_110383721_110383839_110385120_110385173_110387164_110387293_110388722_110388801_110390208_110390349_110397531_110397578_110403614
transcript_10485.known	chr11	-	1861	3	FSM	ENSMUSG00000087259.8	ENSMUST00000127263.8	1861	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	2	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTTGTCTTTTCTAAA	NA	False	NA	NA	False	TATAAA	-23	NA	113092664	112934720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_112935987_112958167_112958213_113092114
transcript_10486.known	chr11	-	1802	2	FSM	ENSMUSG00000087259.8	ENSMUST00000145206.2	1802	2	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGTTGTCTTTTCTAAA	NA	False	NA	NA	False	TATAAA	-23	NA	113092648	112934720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_112935989_113092114
transcript_10490.nnic	chr11	-	2711	11	NNC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	-30	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	187.885736552832	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTGTTCCGTGCGAT	7716	False	NA	-3	True	AATAAA	-18	NA	113456635	113135679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_113136691_113136716_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
transcript_10492.nnic	chr11	-	2690	11	NNC	ENSMUSG00000041654.16	novel	2781	11	NA	NA	-30	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	163.123542139079	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTGTTCCGTGCGAT	7716	False	NA	-3	True	AATAAA	-18	NA	113456635	113135679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_113136691_113136716_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
transcript_10494.nic	chr11	-	2799	10	NIC	ENSMUSG00000041654.16	novel	2688	10	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	188.939601035638	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7745	False	NA	-2	True	AATAAA	-19	NA	113456606	113135678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456411
transcript_10495.known	chr11	-	2688	10	FSM	ENSMUSG00000041654.16	ENSMUST00000106633.10	2688	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	154.822558728882	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7766	False	NA	-2	True	AATAAA	-19	NA	113456585	113135678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
transcript_10498.nic	chr11	-	2778	10	NIC	ENSMUSG00000041654.16	novel	2781	11	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_9	159.75845965738	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7745	False	NA	-2	True	AATAAA	-19	NA	113456606	113135678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456411
transcript_10499.known	chr11	-	2664	10	FSM	ENSMUSG00000041654.16	ENSMUST00000071539.10	2664	10	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_5	113.78341999899	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTGTTCCGTGCGATC	7769	False	NA	-2	True	AATAAA	-19	NA	113456582	113135678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_113137322_113138545_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
transcript_105.known	SIRV3	+	436	3	FSM	SIRV3A	SIRV305	436	3	0	0	0	0	multi-exon	FALSE	canonical	3	1609	junction_2	828.5	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAATCTTAATAGACGATT	NA	False	NA	NA	False	NA	NA	NA	4003	6718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV3_+_4081_4568_4780_6570
transcript_10507.nic	chr11	-	1283	9	ISM	ENSMUSG00000041654.16	ENSMUST00000106633.10	2688	10	-50	2679	-30	-2679	5prime_fragment	FALSE	canonical	0	0	junction_4	163.816780276014	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGTGGCATAAGGCAGGA	7716	False	NA	NA	False	AATAAA	-20	NA	113456635	113138357	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354776_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
transcript_10509.nic	chr11	-	1262	9	ISM	ENSMUSG00000041654.16	ENSMUST00000071539.10	2664	10	-53	2679	-30	-2679	5prime_fragment	FALSE	canonical	3	154	junction_4	120.581922359863	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGTGGCATAAGGCAGGA	7716	False	NA	NA	False	AATAAA	-20	NA	113456635	113138357	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_113138705_113141293_113141393_113196710_113196781_113260553_113260725_113354797_113354922_113414291_113414451_113450336_113450376_113452831_113452951_113456501
transcript_10512.known	chr11	+	1537	3	FSM	ENSMUSG00000047904.7	ENSMUST00000106630.2	1537	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTCCAGCATCTGTCTT	NA	False	NA	NA	False	AAGAAA	-32	NA	113510301	113516721	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_113510449_113514992_113516076_113516414
transcript_10513.nic	chr11	+	2584	12	NIC	ENSMUSG00000018661.18	novel	3935	14	NA	NA	-2608	0	intron_retention	FALSE	canonical	3	226	junction_3	31.6172878748634	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGAGGTGCCTCTGCTCCTG	NA	False	NA	13	True	AATAAA	-21	NA	113542904	113553225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_113543233_113543367_113543539_113544729_113544887_113545793_113546005_113546685_113547475_113547828_113547976_113548200_113548363_113549304_113549433_113550094_113550204_113551768_113551879_113551965_113552045_113553032
transcript_10514.nnic	chr11	-	1085	3	NNC	ENSMUSG00000041629.8	novel	2619	3	NA	NA	220	-1588	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	675	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAGTTTCCATGGGGAAAA	NA	False	NA	-16	True	AATAAA	-14	NA	113574761	113553732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_113554370_113568129_113568230_113574413
transcript_10515.known	chr11	-	2619	3	FSM	ENSMUSG00000041629.8	ENSMUST00000120194.2	2619	3	0	0	0	0	multi-exon	FALSE	canonical	3	1327	junction_2	35.5	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCCTAATTGGTTGGTT	NA	False	NA	-8	True	ATTAAA	-24	NA	113574981	113552144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_113554370_113568129_113568230_113574687
transcript_10516.nnic	chr11	-	791	3	NNC	ENSMUSG00000041629.8	novel	2619	3	NA	NA	220	-1882	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	675	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTCGGCTTTCCGTCT	NA	False	NA	-22	True	TTTAAA	-27	NA	113574761	113554026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_113554370_113568129_113568230_113574413
transcript_10521.known	chr11	+	2062	5	FSM	ENSMUSG00000041623.18	ENSMUST00000106621.4	2062	5	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_1	30.335622624235	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575272	113585473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_113575538_113578599_113580048_113582554_113582660_113583220_113583329_113585337
transcript_10522.known	chr11	+	2196	5	FSM	ENSMUSG00000041623.18	ENSMUST00000042227.15	2196	5	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_1	114.630929508575	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575237	113585473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_113575637_113578599_113580048_113582554_113582660_113583220_113583329_113585337
transcript_10523.nic	chr11	+	2655	5	NIC	ENSMUSG00000041623.18	novel	2196	5	NA	NA	2	0	intron_retention	TRUE	canonical	3	43	junction_1	113.778293184597	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575239	113585473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_113576098_113578599_113580048_113582554_113582660_113583220_113583329_113585337
transcript_10524.nnic	chr11	+	1999	4	NIC	ENSMUSG00000041623.18	novel	2062	5	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_2	111.645271582216	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575230	113585473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_113575538_113578599_113580048_113583220_113583329_113585337
transcript_10525.nnic	chr11	+	2089	4	NIC	ENSMUSG00000041623.18	novel	2196	5	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_2	114.909626325309	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575239	113585473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_113575637_113578599_113580048_113583220_113583329_113585337
transcript_10526.nnic	chr11	+	2550	4	NIC	ENSMUSG00000041623.18	novel	2196	5	NA	NA	2	0	intron_retention	FALSE	canonical	3	28	junction_2	114.479498407163	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTCTTCTTTTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	113575239	113585473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_113576098_113578599_113580048_113583220_113583329_113585337
transcript_10535.nic	chr11	-	1342	8	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-195	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	63.2926471533105	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600547	113588997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_113589493_113590661_113590740_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600212
transcript_10540.known	chr11	-	1375	8	FSM	ENSMUSG00000018727.20	ENSMUST00000100248.6	1375	8	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_7	53.4469028903587	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600352	113588997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600053
transcript_10541.known	chr11	-	1213	8	FSM	ENSMUSG00000018727.20	ENSMUST00000173655.8	1213	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	68.8879599088851	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600346	113588997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593336_113594096_113594193_113597242_113597396_113599629_113599681_113600212
transcript_10543.nic	chr11	-	1352	8	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-80	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_7	55.2692851188707	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600923	113588997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_113589493_113590661_113590809_113592881_113592922_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600647
transcript_10552.nic	chr11	-	1488	7	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-153	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	74.0855361502275	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600505	113588997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_113589493_113590661_113590809_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600053
transcript_10553.nic	chr11	-	1371	7	NIC	ENSMUSG00000018727.20	novel	1375	8	NA	NA	-195	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	66.4646940529749	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600547	113588997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_113589493_113590661_113590809_113593238_113593333_113594096_113594193_113597242_113597396_113599629_113599681_113600212
transcript_10554.known	chr11	-	1235	7	FSM	ENSMUSG00000018727.20	ENSMUST00000018871.8	1235	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	88.6372131531422	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGCATTGATTCCTTTTC	NA	False	NA	-9	True	AATATA	-16	NA	113600843	113588997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_113589493_113590661_113590809_113593238_113593336_113594096_113594193_113597242_113597396_113599629_113599681_113600647
transcript_10560.known	chr11	-	3008	2	FSM	ENSMUSG00000041598.8	ENSMUST00000053536.5	3008	2	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTAGTGTCTGACTCTTC	7363	False	NA	-2	True	ATTAAA	-15	NA	113642707	113617677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_113620492_113642513
transcript_10564.known	chr11	+	364	5	FSM	ENSMUSG00000057322.13	ENSMUST00000077915.10	364	5	0	0	0	0	multi-exon	FALSE	canonical	3	5140	junction_1	6068.87239835375	3223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559373	114563157	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_114559453_114559606_114559641_114559731_114559793_114562559_114562683_114563090
transcript_10565.known	chr11	+	345	5	FSM	ENSMUSG00000057322.13	ENSMUST00000082092.5	345	5	0	0	0	0	multi-exon	FALSE	canonical	3	1304	junction_1	7543.63564122102	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559451	114563157	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_114559512_114559606_114559641_114559731_114559793_114562559_114562683_114563090
transcript_10567.known	chr11	+	371	5	FSM	ENSMUSG00000057322.13	ENSMUST00000106602.10	371	5	0	0	0	0	multi-exon	FALSE	canonical	3	6598	junction_1	5536.08152825625	6464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559349	114563157	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_114559436_114559606_114559641_114559731_114559793_114562559_114562683_114563090
transcript_10568.known	chr11	+	457	4	FSM	ENSMUSG00000057322.13	ENSMUST00000106599.8	457	4	0	0	0	0	multi-exon	FALSE	canonical	3	12129	junction_3	3589.14031799012	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCCTCAGTCTC	NA	False	NA	28	True	ATTAAA	-15	NA	114559434	114563157	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_114559641_114559731_114559793_114562559_114562683_114563090
transcript_10569.known	chr11	+	3486	14	FSM	ENSMUSG00000034714.10	ENSMUST00000045779.6	3486	14	0	0	0	0	multi-exon	TRUE	canonical	3	173	junction_11	15.0937896237857	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGCAGCTGAGTCACTT	NA	False	NA	11	True	AATAAA	-14	NA	114566256	114611803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_114566499_114577219_114577393_114581064_114581177_114587414_114587636_114592606_114592703_114593061_114593135_114598161_114598232_114598504_114598561_114599242_114599336_114599594_114599688_114600868_114601012_114601636_114601823_114602585_114602665_114609954
transcript_10572.nic	chr11	+	1843	4	ISM	ENSMUSG00000051043.17	ENSMUST00000053361.12	3667	5	-22	3521	-22	0	5prime_fragment	FALSE	canonical	3	20	junction_1	8.2192186706253	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTTGCTTTGGGCTTGTG	906	False	NA	NA	False	AATAAA	-19	NA	114742645	114759922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_114742713_114754292_114755373_114757450_114757546_114759321
transcript_10573.known	chr11	+	3667	5	FSM	ENSMUSG00000051043.17	ENSMUST00000053361.12	3667	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	7.21110255092798	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTGTGTTTCTAAGTGA	928	False	NA	NA	False	ATTAAA	-38	NA	114742667	114763443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_114742713_114754292_114755373_114757450_114757546_114759321_114759472_114761146
transcript_10574.known	chr11	+	2210	9	FSM	ENSMUSG00000020732.14	ENSMUST00000021076.6	2210	9	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	1.36358901432946	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGACCGGTTTTTCCCCC	NA	False	NA	NA	False	ATTAAA	-23	NA	115044982	115053062	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_115045118_115047752_115047864_115048776_115048819_115049330_115049398_115049484_115049538_115050501_115050568_115051124_115051182_115051263_115051341_115051460
transcript_10575.known	chr11	+	1925	6	FSM	ENSMUSG00000020733.4	ENSMUST00000021077.4	1925	6	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	12.6964561984831	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTCTGTGTCCTCCTTT	NA	False	NA	10	True	NA	NA	NA	115054166	115072007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_115054778_115067176_115067339_115068049_115068204_115069875_115069917_115070832_115070923_115071140
transcript_10581.known	chr11	-	1158	7	FSM	ENSMUSG00000015542.18	ENSMUST00000103039.2	1158	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	52.6331644498029	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTTGTTTGTTCACC	NA	False	NA	-5	True	AGTAAA	-16	NA	115078181	115073657	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574_115077664_115077955
transcript_10584.known	chr11	-	1204	7	FSM	ENSMUSG00000015542.18	ENSMUST00000103040.11	1204	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	40.7553677446297	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCCTTGTTTGTTCACC	NA	False	NA	-5	True	AGTAAA	-16	NA	115078216	115073657	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115074092_115074180_115074276_115074450_115074511_115075308_115075453_115075832_115075943_115077574_115077664_115077944
transcript_10585.known	chr11	-	1948	12	FSM	ENSMUSG00000018861.9	ENSMUST00000021078.3	1948	12	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_7	15.1766458254911	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGGCTGATAGCTACCA	NA	False	NA	0	True	AATAAA	-17	NA	115167876	115158849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115159281_115159403_115159575_115160270_115160443_115160522_115160723_115160840_115160926_115161148_115161257_115162087_115162190_115162482_115162597_115162702_115162826_115163012_115163109_115166904_115167009_115167634
transcript_10588.known	chr11	-	4951	6	FSM	ENSMUSG00000044788.11	ENSMUST00000056153.8	4951	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	1.6	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGTATTGTCCCAATAAA	429	False	NA	NA	False	AATGAA	-1	NA	115188340	115170447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115174482_115175025_115175206_115176124_115176313_115176943_115177125_115187363_115187531_115188139
transcript_10590.known	chr11	-	3236	19	FSM	ENSMUSG00000034586.15	ENSMUST00000044152.13	3236	19	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_16	3.67045259092421	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGTGTCTCTGTACAT	8697	False	NA	0	True	AATAAA	-15	NA	115258545	115238532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115239359_115239625_115239785_115239911_115240004_115240747_115240829_115241317_115241425_115241744_115241973_115243410_115243576_115245225_115245305_115245411_115245564_115245850_115245942_115246119_115246261_115247190_115247248_115247445_115247669_115249495_115249613_115249802_115249910_115250520_115250635_115251147_115251319_115252464_115252615_115258369
transcript_10591.known	chr11	-	3276	19	FSM	ENSMUSG00000034586.15	ENSMUST00000106542.9	3276	19	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_16	3.88928569404159	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGTGTCTCTGTACAT	8660	False	NA	0	True	AATAAA	-15	NA	115258582	115238532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115239359_115239625_115239785_115239911_115240004_115240747_115240829_115241317_115241425_115241744_115241973_115243410_115243576_115245225_115245305_115245411_115245564_115245850_115245942_115246119_115246261_115247190_115247248_115247445_115247669_115249495_115249613_115249802_115249910_115250520_115250638_115251147_115251319_115252464_115252615_115258369
transcript_10592.known	chr11	+	749	6	FSM	ENSMUSG00000018858.16	ENSMUST00000103036.5	749	6	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	353.082766501	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTTCCAGTGAGAGCT	NA	False	NA	16	True	AATAAA	-16	NA	115294582	115301745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_115294700_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
transcript_10593.known	chr11	+	2596	6	FSM	ENSMUSG00000018858.16	ENSMUST00000153983.8	2596	6	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_3	61.9825781974258	497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTTTCACTGTGAGT	NA	False	NA	NA	False	NA	NA	NA	115294577	115303500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_115294787_115297376_115297414_115300305_115300366_115300885_115300969_115301057_115301228_115301463
transcript_10598.known	chr11	+	2522	5	FSM	ENSMUSG00000018858.16	ENSMUST00000106539.10	2522	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_2	428.298377302553	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTGTCGCCCTTTCTTGT	NA	False	NA	NA	False	NA	NA	NA	115294579	115303488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_115294787_115297376_115297414_115300885_115300969_115301057_115301228_115301463
transcript_106.known	SIRV4	+	1567	3	FSM	SIRV4C	SIRV409	1567	3	0	0	0	0	multi-exon	FALSE	canonical	3	1019	junction_2	11.5	755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATATTGTAACCTGTCAAG	NA	False	NA	NA	False	NA	NA	NA	1000	3403	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV4_+_1347_1678_1886_2389
transcript_1060.known	chr1	+	9507	15	FSM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	0	0	0	0	multi-exon	FALSE	canonical	3	1434	junction_3	210.570471503931	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACCAGCGGGTGCTGCT	NA	False	NA	2	True	AATAAA	-17	NA	59724167	59758203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653_59749812_59750429
transcript_10606.known	chr11	-	682	7	FSM	ENSMUSG00000034566.11	ENSMUST00000106537.8	682	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_6	1501.20529353361	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310743	115306514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115310017_115310120_115310717
transcript_10607.known	chr11	-	625	6	FSM	ENSMUSG00000034566.11	ENSMUST00000043931.9	625	6	0	0	0	0	multi-exon	FALSE	canonical	3	1974	junction_5	551.930285452792	2510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310788	115306514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309343_115310717
transcript_10608.known	chr11	-	659	6	FSM	ENSMUSG00000034566.11	ENSMUST00000073791.10	659	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	1301.70156333931	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGTCTCTGAGTAGATAAAT	NA	False	NA	-3	True	AATAAA	-22	NA	115310788	115306514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115306706_115306840_115306904_115307678_115307751_115308664_115308762_115309211_115309377_115310717
transcript_10613.known	chr11	+	2062	2	FSM	ENSMUSG00000045775.16	ENSMUST00000106532.4	2062	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTGCCTCTCTGTCTAA	NA	False	NA	NA	False	ATTAAA	-41	NA	115353299	115365224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_115353634_115363496
transcript_10614.known	chr11	-	858	5	FSM	ENSMUSG00000020736.13	ENSMUST00000021082.7	858	5	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_4	11.1214882097676	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGATCTTTGATGCT	NA	False	NA	-8	True	AATAAA	-19	NA	115382688	115381245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115381571_115381678_115381794_115381963_115382025_115382096_115382198_115382432
transcript_10615.nnic	chr11	-	834	5	NNC	ENSMUSG00000020736.13	novel	858	5	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	85.4382086656784	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGATCTTTGATGCT	NA	False	NA	-8	True	AATAAA	-19	NA	115382689	115381245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_115381571_115381678_115381794_115381988_115382025_115382096_115382198_115382432
transcript_10618.nic	chr11	-	992	4	NIC	ENSMUSG00000020736.13	novel	858	5	NA	NA	-11	0	intron_retention	FALSE	canonical	3	183	junction_3	12.7104506432917	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTTGGATCTTTGATGCT	NA	False	NA	-8	True	AATAAA	-19	NA	115382652	115381245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_115381571_115381678_115382025_115382096_115382198_115382432
transcript_10619.known	chr11	+	1009	3	FSM	ENSMUSG00000057219.12	ENSMUST00000136985.8	1009	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	10	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGCAGATGCAAAGACCACA	NA	False	NA	NA	False	AAAACA	-30	NA	115366523	115374603	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_115366854_115366947_115367092_115374068
transcript_10620.known	chr11	+	2260	3	FSM	ENSMUSG00000057219.12	ENSMUST00000035240.7	2260	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	2.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTGTGTGCTAGTCTCC	NA	False	NA	NA	False	ATTAAA	-22	NA	115366492	115381293	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_115366854_115366947_115367092_115379538
transcript_10622.known	chr11	-	907	3	FSM	ENSMUSG00000020736.13	ENSMUST00000124778.8	907	3	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	15.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGGGGGATCATTGAGAG	NA	False	NA	NA	False	NA	NA	NA	115382677	115381463	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115382025_115382096_115382198_115382432
transcript_10623.known	chr11	-	1375	5	FSM	ENSMUSG00000020737.13	ENSMUST00000021083.7	1375	5	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_2	125.475844288851	1104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACCGTGTTTTGTCTTTCT	NA	False	NA	NA	False	AGTAAA	-19	NA	115405213	115388178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115389126_115391491_115391511_115392830_115392929_115393857_115394001_115405045
transcript_10624.known	chr11	-	597	5	FSM	ENSMUSG00000020737.13	ENSMUST00000145104.8	597	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	740.766663666772	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTCTGTCTGTCTGTTTG	NA	False	NA	-111	True	NA	NA	NA	115405174	115388956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115389126_115391491_115391550_115392830_115392929_115393857_115394001_115405045
transcript_10628.known	chr11	-	696	4	FSM	ENSMUSG00000020737.13	ENSMUST00000155399.2	696	4	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_1	143.613679323694	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACACTGGGTGTGGTGGC	NA	False	NA	NA	False	NA	NA	NA	115405197	115391207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115391511_115392830_115392929_115393857_115394001_115405045
transcript_10630.known	chr11	-	1051	4	FSM	ENSMUSG00000020738.17	ENSMUST00000153892.2	1051	4	0	0	0	0	multi-exon	FALSE	canonical	3	3819	junction_1	149.312498546579	983	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115427102	115413927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426923
transcript_10631.known	chr11	-	884	3	FSM	ENSMUSG00000020738.17	ENSMUST00000118155.8	884	3	0	0	0	0	multi-exon	FALSE	canonical	2	199	junction_1	1955	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115427007	115413927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115414596_115425377_115425510_115426923
transcript_10632.known	chr11	-	911	4	FSM	ENSMUSG00000020738.17	ENSMUST00000121185.8	911	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	1864.33300554261	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTCTCTTTATTCTGAA	NA	False	NA	-51	True	AATAAA	-18	NA	115426643	115413927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115414596_115421171_115421244_115425377_115425510_115426604
transcript_10638.known	chr11	+	2230	19	FSM	ENSMUSG00000020739.12	ENSMUST00000021085.11	2230	19	0	0	0	0	multi-exon	TRUE	canonical	3	862	junction_16	81.0315439264927	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAGATGGATGTTTCCAC	NA	False	NA	91	True	AATGAA	-12	NA	115455259	115474811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473702_115473855_115474151_115474254_115474546
transcript_10640.nnic	chr11	+	2111	19	NNC	ENSMUSG00000020739.12	novel	2230	19	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_16	299.37137842857	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAATTGTTAATCCTACC	NA	False	NA	12	True	AATAAA	-18	NA	115455275	115474732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_115455389_115455979_115456074_115457426_115457590_115459188_115459260_115459504_115459549_115460527_115460598_115460824_115460947_115468755_115468891_115468989_115469113_115469314_115469447_115469615_115469723_115471329_115471414_115471555_115471622_115471746_115471899_115472567_115472686_115472764_115472866_115473910_115474039_115474151_115474254_115474546
transcript_10667.known	chr11	-	3816	17	FSM	ENSMUSG00000020740.14	ENSMUST00000019135.14	3816	17	0	0	0	0	multi-exon	TRUE	canonical	3	352	junction_6	42.6075385788712	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGCATCTTTCAATACAG	3381	False	NA	-2	True	AATAAA	-15	NA	115494877	115475080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115476667_115476911_115477023_115477141_115477312_115477821_115478028_115478231_115478543_115478761_115478830_115479137_115479372_115479681_115479799_115479880_115479963_115481221_115481360_115481712_115481794_115482088_115482193_115482455_115482580_115483257_115483357_115485531_115485608_115485734_115485820_115494653
transcript_1067.nic	chr1	+	1825	14	ISM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	-92	8392	-54	-627	5prime_fragment	FALSE	canonical	3	1434	junction_3	175.9835589416	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGATTTTGGTGTTGT	NA	False	NA	17	True	NA	NA	NA	59724075	59749811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161_59748296_59749653
transcript_10677.known	chr11	-	828	6	FSM	ENSMUSG00000020743.16	ENSMUST00000127132.8	828	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	172.877991658857	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCACCACCTTCCTCCTGG	NA	False	NA	NA	False	NA	NA	NA	115503656	115499032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115499440_115499886_115499923_115500105_115500262_115500364_115500416_115502728_115502861_115503610
transcript_10679.known	chr11	-	993	6	FSM	ENSMUSG00000020743.16	ENSMUST00000106506.8	993	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	146.078608974757	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCCACTGGTGCAACAT	NA	False	NA	NA	False	NA	NA	NA	115503704	115498974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115499440_115499886_115499923_115500105_115500262_115500364_115500475_115502728_115502861_115503610
transcript_10681.known	chr11	-	1271	6	FSM	ENSMUSG00000020743.16	ENSMUST00000137304.8	1271	6	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_4	137.166468205608	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503753	115498743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500416_115502728_115502861_115503610
transcript_10684.known	chr11	-	1372	6	FSM	ENSMUSG00000020743.16	ENSMUST00000021087.14	1372	6	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	38.1030182531515	306	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503795	115498743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728_115502861_115503610
transcript_10685.nnic	chr11	-	1347	6	NNC	ENSMUSG00000020743.16	novel	1372	6	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	134.525239267581	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503788	115498743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728_115502861_115503628
transcript_10688.known	chr11	+	1962	5	FSM	ENSMUSG00000046756.11	ENSMUST00000058109.9	1962	5	0	0	0	0	multi-exon	TRUE	canonical	3	642	junction_4	47.0451910401053	390	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTGTAACTTGCCCTT	NA	False	NA	NA	False	TATAAA	-15	NA	115494750	115498862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_115495070_115495546_115495739_115495848_115495913_115496795_115496964_115497643
transcript_107.known	SIRV4	+	950	2	FSM	SIRV4C	SIRV410	950	2	0	0	0	0	multi-exon	FALSE	canonical	3	1621	junction_1	0	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTATATGTTGTTGCTG	NA	False	NA	NA	False	NA	NA	NA	1455	2771	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV4_+_1886_2251
transcript_10700.nic	chr11	-	1512	5	NIC	ENSMUSG00000020743.16	novel	1372	6	NA	NA	-14	0	intron_retention	FALSE	canonical	3	324	junction_4	32.8129166640212	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503809	115498743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_115499440_115499886_115500262_115500364_115500475_115502728_115502861_115503610
transcript_10704.known	chr11	-	621	4	FSM	ENSMUSG00000020743.16	ENSMUST00000142637.2	621	4	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_3	34.4222150491349	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCCTTTGCTCTCCCCA	NA	False	NA	NA	False	NA	NA	NA	115503730	115500002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115500262_115500364_115500475_115502728_115502861_115503610
transcript_10705.known	chr11	-	1656	5	FSM	ENSMUSG00000020743.16	ENSMUST00000106507.9	1656	5	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	39.92101576864	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCGTATTTCCATAGCATC	NA	False	NA	0	True	AATAAA	-18	NA	115503329	115498743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115499440_115499886_115499980_115500105_115500262_115500364_115500475_115502728
transcript_10711.known	chr11	-	2307	7	FSM	ENSMUSG00000020744.14	ENSMUST00000021089.11	2307	7	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_6	21.3053201493586	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCTGACTGCAGACCATT	NA	False	NA	-13	True	AATAAA	-17	NA	115518971	115505003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115506418_115507346_115507478_115508343_115508528_115511702_115511874_115514697_115514854_115515024_115515195_115518890
transcript_10721.known	chr11	-	2709	6	FSM	ENSMUSG00000059923.14	ENSMUST00000021090.14	2709	6	0	0	0	0	multi-exon	FALSE	canonical	3	859	junction_5	53.4714877294432	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGTCTTCATTTCTCC	4470	False	NA	-1	True	AATAAA	-19	NA	115599423	115534870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115536781_115537535_115537705_115540596_115540720_115546183_115546282_115589977_115590183_115599219
transcript_10724.known	chr11	-	483	1	FSM	ENSMUSG00000083394.3	ENSMUST00000118352.3	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGTACGCAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	115615634	115615151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115615200_115615600
transcript_10727.known	chr11	+	1979	11	FSM	ENSMUSG00000020781.15	ENSMUST00000021134.10	1979	11	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	26.8730348118704	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTTCAATACTTACAGGGG	5932	False	NA	NA	False	ATTAAA	-21	NA	115705549	115713920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_115705646_115705740_115705906_115706000_115706065_115706152_115706237_115706523_115706623_115707878_115707932_115710950_115711050_115711204_115711834_115712481_115712543_115712824_115712942_115713408
transcript_1073.nic	chr1	+	1630	13	ISM	ENSMUSG00000026020.10	ENSMUST00000191142.7	9507	15	-92	9945	-54	0	5prime_fragment	FALSE	canonical	3	1434	junction_3	169.099986858532	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAGAAAGCAAAAAAAGC	NA	False	NA	NA	False	GATAAA	-16	NA	59724075	59748258	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59748161
transcript_10733.nic	chr11	+	3812	27	NIC	ENSMUSG00000020782.19	novel	3551	26	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	59	junction_1	202.96016457021	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACCTGAGGACCCGTGC	6794	False	NA	38	True	AATAAA	-23	NA	115714868	115746604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_115715004_115723487_115723745_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745888_115745932_115746017_115746080_115746291
transcript_10734.known	chr11	+	3551	26	FSM	ENSMUSG00000020782.19	ENSMUST00000103032.11	3551	26	0	0	0	0	multi-exon	FALSE	canonical	3	630	junction_7	88.2626444199357	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTGAGGACCCGTGCTT	6800	False	NA	40	True	AATAAA	-25	NA	115714874	115746606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745637_115745686_115745888_115745932_115746017_115746080_115746291
transcript_10736.nic	chr11	+	3512	25	NIC	ENSMUSG00000020782.19	novel	3551	26	NA	NA	-11	0	combination_of_known_junctions	TRUE	canonical	3	54	junction_22	172.677761668954	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACCTGAGGACCCGTGC	6789	False	NA	38	True	AATAAA	-23	NA	115714863	115746604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199_115736359_115737746_115737910_115737996_115738130_115738414_115738470_115739011_115739167_115740341_115740560_115740636_115740705_115740821_115740976_115741063_115741169_115741452_115741746_115741833_115741985_115742942_115743100_115743856_115743974_115744093_115744261_115744542_115744808_115745018_115745182_115745372_115745402_115745888_115745932_115746017_115746080_115746291
transcript_10737.nic	chr11	+	814	6	ISM	ENSMUSG00000020782.19	ENSMUST00000103032.11	3551	26	-11	10135	-11	169	5prime_fragment	FALSE	canonical	3	674	junction_1	80.564508314766	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCGTCTCAGTCAACCCC	6789	False	NA	NA	False	AGTAAA	-20	NA	115714863	115736471	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_115715004_115725622_115725729_115734142_115734241_115735319_115735402_115735660_115735777_115736199
transcript_10740.known	chr11	+	3654	11	FSM	ENSMUSG00000020755.10	ENSMUST00000140991.2	3654	11	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_4	19.7585424563656	220	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTGGTTTTGTGGAGT	44	False	NA	7	True	NA	NA	NA	115824107	115857551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_115824608_115826191_115826302_115828835_115828884_115842792_115842836_115848186_115848276_115851325_115851418_115852181_115852243_115852564_115852617_115853319_115853379_115854768_115854854_115855036
transcript_10747.known	chr11	-	1406	8	FSM	ENSMUSG00000020766.5	ENSMUST00000021114.5	1406	8	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_4	62.9907670591006	266	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTTCCTACTGCAGG	NA	False	NA	9	True	NA	NA	NA	115903545	115899282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115899541_115899628_115899792_115899873_115900025_115900746_115900929_115901066_115901203_115901388_115901509_115901852_115902043_115903339
transcript_10753.known	chr11	-	1993	4	FSM	ENSMUSG00000016559.15	ENSMUST00000016703.8	1993	4	0	0	0	0	multi-exon	FALSE	canonical	3	12160	junction_3	927.451466235416	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTAGCCTTGGCCACAA	NA	False	NA	9	True	AATAAA	-39	NA	115915330	115912786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115914362_115914450_115914605_115914707_115914846_115915204
transcript_10754.known	chr11	+	3735	16	FSM	ENSMUSG00000020770.14	ENSMUST00000021116.12	3735	16	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_13	17.1308688240459	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGCTTGTTTATATGGGA	8822	False	NA	19	True	AATAAA	-13	NA	115921147	115952040	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_115921318_115938502_115938713_115939810_115939988_115940139_115940271_115940862_115940999_115941512_115941631_115942283_115942369_115943841_115943985_115944315_115944517_115945222_115945289_115945662_115945838_115946806_115946909_115947016_115947206_115949068_115949251_115949814_115950073_115950648
transcript_10758.known	chr11	+	471	3	FSM	ENSMUSG00000020770.14	ENSMUST00000176788.2	471	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTAGCAACTAAAAGCAGACA	8823	False	NA	NA	False	NA	NA	NA	115921148	115931876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_115921318_115929365_115929610_115931818
transcript_10759.known	chr11	-	3973	33	FSM	ENSMUSG00000057948.13	ENSMUST00000106451.8	3973	33	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_32	6.68246013362594	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAATCTATAGTTGGCT	NA	False	NA	-2	True	AATAAA	-25	NA	115968787	115952921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115953630_115954464_115954662_115955068_115955193_115955370_115955492_115955586_115955671_115956124_115956197_115956267_115956374_115957515_115957596_115958656_115958726_115958870_115959078_115959201_115959301_115959488_115959633_115959940_115960062_115960183_115960315_115960391_115960444_115960527_115960626_115960706_115960764_115960846_115960938_115961060_115961186_115961255_115961374_115964210_115964315_115964394_115964488_115964609_115964715_115964867_115964938_115965063_115965133_115965225_115965271_115966530_115966712_115966933_115967001_115967095_115967156_115967267_115967376_115967577_115967614_115968273_115968488_115968770
transcript_1076.known	chr1	+	1713	13	FSM	ENSMUSG00000026020.10	ENSMUST00000027174.10	1713	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	536.31660425536	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTTTTGTGATCTCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	59724135	59750669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_59724386_59729644_59729722_59731495_59731549_59735136_59735259_59737481_59737619_59740043_59740109_59741971_59742107_59743221_59743368_59743782_59743910_59744751_59744916_59745791_59745927_59746161_59746224_59750429
transcript_10761.known	chr11	-	1826	8	FSM	ENSMUSG00000034341.18	ENSMUST00000074628.13	1826	8	0	0	0	0	multi-exon	FALSE	canonical	3	961	junction_1	94.6975852546475	575	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCTCTGACTCTTGTGTG	NA	False	NA	-11	True	AGTAAA	-16	NA	115977821	115969398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115970423_115970533_115970611_115971047_115971171_115971371_115971507_115972057_115972151_115973101_115973238_115974664_115974774_115977692
transcript_10764.known	chr11	-	2192	6	FSM	ENSMUSG00000020773.12	ENSMUST00000106441.8	2192	6	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	39.5777715390849	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	116001063	115996577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115997468_115997757_115997830_115998249_115998449_115998603_115998835_115999091_115999188_116000359
transcript_10765.known	chr11	-	2204	6	FSM	ENSMUSG00000020773.12	ENSMUST00000021120.6	2204	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	42.4951761968344	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	116001072	115996577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115997468_115997757_115997833_115998249_115998449_115998603_115998835_115999091_115999188_116000359
transcript_10766.nnic	chr11	-	1060	5	NNC	ENSMUSG00000020773.12	novel	1503	4	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	54.7083174663597	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	115998915	115996577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_115996921_115997333_115997468_115997757_115997830_115998249_115998449_115998603
transcript_1077.known	chr1	-	3650	11	FSM	ENSMUSG00000026018.13	ENSMUST00000027172.13	3650	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.7	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTCTCTAAAGTGTTCA	NA	False	NA	NA	False	AATAAA	-23	NA	60082246	60028226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_60030399_60036609_60036871_60042814_60042865_60045392_60045479_60046966_60047066_60049267_60049394_60052978_60053178_60054870_60054995_60061736_60061810_60067226_60067396_60081955
transcript_10770.known	chr11	-	1503	4	FSM	ENSMUSG00000020773.12	ENSMUST00000141531.8	1503	4	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_3	17.6131264181639	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	115998945	115996577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115997468_115997757_115997830_115998249_115998449_115998603
transcript_10771.known	chr11	-	782	4	FSM	ENSMUSG00000020773.12	ENSMUST00000134691.2	782	4	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	44.1437047229462	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGGGCCGGCTGGGCCGCA	NA	False	NA	NA	False	NA	NA	NA	115998861	115997217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_115997468_115997757_115997833_115998249_115998449_115998603
transcript_10772.nic	chr11	-	1627	3	ISM	ENSMUSG00000020773.12	ENSMUST00000134691.2	782	4	-50	-640	34	0	intron_retention	FALSE	canonical	3	54	junction_2	53.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCCCCTTTCATTCCT	NA	False	NA	NA	False	NA	NA	NA	115998911	115996577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_115997468_115997757_115997833_115998249
transcript_10775.known	chr11	-	1411	9	FSM	ENSMUSG00000020775.14	ENSMUST00000106439.2	1411	9	0	0	0	0	multi-exon	FALSE	canonical	3	763	junction_8	33.509093914936	660	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTCTTCACTTTCGGG	407	False	NA	-2	True	AATAAA	-20	NA	116029694	116022642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267_116029448_116029536
transcript_10787.known	chr11	-	995	2	FSM	ENSMUSG00000020775.14	ENSMUST00000138457.2	995	2	0	0	0	0	multi-exon	FALSE	canonical	3	763	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCTGGTGCCCCATCTCC	410	False	NA	NA	False	NA	NA	NA	116029691	116028607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_116029448_116029536
transcript_10788.known	chr11	-	1403	8	FSM	ENSMUSG00000020775.14	ENSMUST00000142550.8	1403	8	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_5	29.2665442484229	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCAATATGTCTTCACTTT	500	False	NA	-6	True	AATAAA	-16	NA	116029601	116022646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_116022957_116023245_116023383_116023568_116023728_116025081_116025128_116025258_116025332_116025733_116025943_116026016_116026152_116029267
transcript_10789.known	chr11	-	3987	14	FSM	ENSMUSG00000020777.17	ENSMUST00000066587.12	3987	14	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_12	15.262593015675	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGCTGTTACGTGTAGA	NA	False	NA	1	True	AATAAA	-15	NA	116089871	116062713	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_116064425_116065118_116065326_116065456_116065601_116065813_116065920_116066030_116066211_116068945_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116074289_116074451_116089047_116089208_116089421
transcript_10790.known	chr11	-	3743	14	FSM	ENSMUSG00000020777.17	ENSMUST00000072948.11	3743	14	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_11	29.8427833148373	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGCTGTTACGTGTAGA	NA	False	NA	1	True	AATAAA	-15	NA	116089627	116062713	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_116064425_116065118_116065326_116065456_116065601_116065813_116065920_116066030_116066211_116068945_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116080240_116080402_116089047_116089208_116089421
transcript_10794.nic	chr11	-	1957	9	ISM	ENSMUSG00000020777.17	ENSMUST00000066587.12	3987	14	-67	5981	-67	1851	5prime_fragment	FALSE	canonical	3	53	junction_7	16.7663166795811	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAATTCGAAAGTTCCAG	NA	False	NA	NA	False	NA	NA	NA	116089938	116068694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_116069137_116069507_116069671_116070433_116070604_116071116_116071233_116071768_116071889_116072738_116072847_116074289_116074451_116089047_116089208_116089421
transcript_10796.known	chr11	+	902	4	FSM	ENSMUSG00000020778.13	ENSMUST00000021130.7	902	4	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_3	16.0277537068951	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGTGTGCTGATGCGG	9067	False	NA	7	True	AATAAA	-14	NA	116089680	116106144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116089810_116095670_116095806_116096436_116096595_116105664
transcript_10797.nnic	chr11	+	757	3	NIC	ENSMUSG00000020778.13	novel	902	4	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_2	63.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGTGTGCTGATGCGG	9054	False	NA	7	True	AATAAA	-14	NA	116089667	116106144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_116089810_116095670_116095806_116105664
transcript_108.known	SIRV4	-	617	2	FSM	SIRV4B	SIRV406	617	2	0	0	0	0	multi-exon	FALSE	canonical	3	2584	junction_1	0	232	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTTAAAAATAGCCTGT	NA	False	NA	NA	False	NA	NA	NA	5158	3637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV4_-_4104_5007
transcript_10807.known	chr11	-	2526	16	FSM	ENSMUSG00000020780.16	ENSMUST00000021133.16	2526	16	0	0	0	0	multi-exon	FALSE	canonical	3	572	junction_9	48.1105209099031	342	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCTGGTTTTTGCA	9817	False	NA	-2	True	ATTAAA	-17	NA	116165043	116135991	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_116136757_116137045_116137099_116137470_116137547_116138641_116138772_116139556_116139652_116141561_116141719_116143554_116143620_116145127_116145227_116151619_116151761_116152570_116152654_116153685_116153796_116154040_116154124_116156182_116156379_116159099_116159214_116162738_116162806_116164751
transcript_10821.known	chr11	+	1940	2	FSM	ENSMUSG00000020793.6	ENSMUST00000055872.3	1940	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATACCATTTCATATGCTGT	NA	False	NA	NA	False	AATAAA	-15	NA	116171764	116174764	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116172677_116173736
transcript_10824.known	chr11	-	3298	19	FSM	ENSMUSG00000020792.16	ENSMUST00000106413.10	3298	19	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_12	61.2926847990569	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGCTTCCTCTGGTGGTG	8920	False	NA	NA	False	ATTAAA	-19	NA	116197560	116178826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116188396_116188490_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
transcript_10829.known	chr11	-	3205	18	FSM	ENSMUSG00000020792.16	ENSMUST00000106411.10	3205	18	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_14	26.4175940114993	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAAGCTTCCTCTGGTGGTG	8920	False	NA	NA	False	ATTAAA	-19	NA	116197560	116178826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_116180112_116180350_116180485_116180775_116180818_116181032_116181097_116181964_116182061_116182279_116182401_116183344_116183411_116184797_116184865_116185232_116185296_116185567_116185667_116185999_116186153_116186369_116186516_116191091_116191260_116191929_116192153_116195402_116195509_116195689_116195875_116197213_116197280_116197439
transcript_10834.known	chr11	+	1482	3	FSM	ENSMUSG00000050628.7	ENSMUST00000057676.7	1482	3	0	0	0	0	multi-exon	TRUE	canonical	3	1535	junction_2	51	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTGTTTTTGTTTTTGC	NA	False	NA	36	True	TTTAAA	-29	NA	116324919	116329903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116325255_116325384_116325448_116328819
transcript_10836.known	chr11	-	1841	10	FSM	ENSMUSG00000015869.17	ENSMUST00000106391.8	1841	10	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_5	49.0028973696177	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGGCTGCTGAGCTCCCAG	NA	False	NA	-7	True	AATAAA	-27	NA	116381174	116361670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_116362382_116363002_116363150_116363769_116363841_116368027_116368174_116368885_116368942_116369350_116369467_116370477_116370651_116376694_116376762_116378943_116378997_116380873
transcript_10838.known	chr11	+	2527	6	FSM	ENSMUSG00000061878.17	ENSMUST00000063446.13	2527	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.49666295470958	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATCCTATCCTGGGGATT	NA	False	NA	NA	False	AATAAA	-18	NA	116423298	116427500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116424195_116424795_116425000_116425674_116425828_116425905_116426001_116426077_116426194_116426437
transcript_10840.known	chr11	-	3593	19	FSM	ENSMUSG00000020806.16	ENSMUST00000103029.10	3593	19	0	0	0	0	multi-exon	FALSE	canonical	2	65	junction_12	15.7409586041568	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTTTTGCCTTAGAC	NA	False	NA	-15	True	ATTAAA	-19	NA	116515026	116488990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_116490265_116490886_116491041_116491223_116491325_116491435_116491512_116491720_116491816_116491911_116491976_116492110_116492218_116492419_116492582_116492714_116492790_116493014_116493127_116494478_116494680_116494757_116494877_116495203_116495333_116495786_116495991_116496068_116496265_116496933_116497059_116498053_116498254_116501129_116501306_116515003
transcript_10841.nic	chr11	+	672	3	ISM	ENSMUSG00000075410.14	ENSMUST00000116318.3	799	5	2050	-2	2002	0	3prime_fragment	FALSE	canonical	3	9	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTAAAGACTGCTTTCT	NA	False	NA	NA	False	AATAAA	-39	NA	116549983	116559215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_116550203_116550558_116550654_116558857
transcript_10843.known	chr11	-	3643	9	FSM	ENSMUSG00000057286.7	ENSMUST00000079545.6	3643	9	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_5	7.34421541078419	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGGCCAAAAAAAGGTTTC	NA	False	NA	NA	False	AAGAAA	-21	NA	116585694	116566128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_116568508_116569291_116569392_116570732_116570817_116572684_116572789_116575171_116575311_116575922_116576092_116576661_116576837_116581137_116581199_116585262
transcript_10845.known	chr11	+	857	6	FSM	ENSMUSG00000020812.19	ENSMUST00000239281.2	857	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	61.1901952930369	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTAGCATTGTGGGTATA	NA	False	NA	4	True	AATAAA	-17	NA	116562513	116566625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566314
transcript_10846.known	chr11	+	865	6	FSM	ENSMUSG00000020812.19	ENSMUST00000139934.8	865	6	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_5	27.7632851082144	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTAGCATTGTGGGTAT	NA	False	NA	3	True	AATAAA	-16	NA	116562485	116566624	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566333
transcript_10847.known	chr11	+	1988	5	FSM	ENSMUSG00000020812.19	ENSMUST00000106378.8	1988	5	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	18.9340962287615	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTAGCATTGTGGGTAT	NA	False	NA	3	True	AATAAA	-16	NA	116562494	116566624	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116562583_116562989_116563182_116563489_116563565_116564763_116564898_116565125
transcript_10848.known	chr11	+	1151	5	FSM	ENSMUSG00000020812.19	ENSMUST00000153405.3	1151	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	29.8862426544388	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTTGGTAGCATTGTG	NA	False	NA	-2	True	AATAAA	-11	NA	116562502	116566619	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116562583_116562989_116563565_116564763_116564898_116565125_116565202_116566333
transcript_10850.known	chr11	+	1257	5	FSM	ENSMUSG00000020812.19	ENSMUST00000239226.2	1257	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	28.7347785792757	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTAGCATTGTGGGTAT	NA	False	NA	3	True	AATAAA	-16	NA	116562500	116566624	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116563182_116563489_116563565_116564763_116564898_116565125_116565202_116566333
transcript_10854.nic	chr11	+	2357	14	NIC	ENSMUSG00000020818.17	novel	2952	14	NA	NA	-20	0	combination_of_known_junctions	TRUE	canonical	3	62	junction_1	8.80424857096892	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAGAGTATTTACTGGGA	NA	False	NA	5	True	AATAAA	-16	NA	116744567	116765538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_116744730_116744825_116745000_116745468_116745525_116749299_116749408_116750124_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
transcript_10855.known	chr11	+	3298	13	FSM	ENSMUSG00000020818.17	ENSMUST00000021173.14	3298	13	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_12	6.07076326887045	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	116744645	116766461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116745000_116745468_116745525_116749299_116749408_116750124_116750205_116750322_116750420_116751884_116751944_116752348_116752494_116754731_116754773_116756716_116756783_116759359_116759486_116762119_116762295_116764069_116764206_116764606
transcript_1086.known	chr1	-	2850	14	FSM	ENSMUSG00000026019.16	ENSMUST00000122038.8	2850	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_13	257.719103084491	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAACTGTCTAGGCTGATA	NA	False	NA	NA	False	AATAAA	-23	NA	60137305	60116026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665_60136887_60137203
transcript_10862.nic	chr11	-	1652	7	NIC	ENSMUSG00000056962.12	novel	2072	6	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	130.186298135488	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGACAGCTTTCTTT	NA	False	NA	-7	True	AATAAA	-16	NA	116734208	116728257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_116728590_116729815_116729955_116730663_116730753_116731273_116731372_116731894_116732182_116733157_116733547_116733890
transcript_10867.nic	chr11	+	1108	6	NIC	ENSMUSG00000090266.11	novel	1276	5	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_2	44.7812460746684	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCAATGGGTATGAAGA	8908	False	NA	17	True	CATAAA	-17	NA	116734343	116740455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_116734601_116736588_116736772_116739079_116739185_116739726_116739965_116740041_116740127_116740215
transcript_10868.nic	chr11	+	1219	6	NIC	ENSMUSG00000090266.11	novel	1276	5	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_2	44.7812460746684	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTACTCCCAATCATTAAA	8908	False	NA	15	True	ATTAAA	-17	NA	116734343	116740566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_116734601_116736588_116736772_116739079_116739185_116739726_116739965_116740041_116740127_116740215
transcript_10870.known	chr11	-	1668	6	FSM	ENSMUSG00000056962.12	ENSMUST00000047616.10	1668	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_2	32.356761271796	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGACAGCTTTCTTT	NA	False	NA	-7	True	AATAAA	-16	NA	116734275	116728257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_116728590_116729815_116729955_116731235_116731372_116731894_116732182_116733157_116733547_116733890
transcript_10871.nnic	chr11	-	1667	6	NIC	ENSMUSG00000056962.12	novel	1668	6	NA	NA	-37	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_2	113.206713581837	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGACAGCTTTCTTT	NA	False	NA	-7	True	AATAAA	-16	NA	116734312	116728257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_116728590_116729815_116729955_116731273_116731372_116731894_116732182_116733157_116733547_116733890
transcript_10872.known	chr11	+	1276	5	FSM	ENSMUSG00000090266.11	ENSMUST00000106370.10	1276	5	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	13.3603892158874	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTACTCCCAATCATTAAA	8668	False	NA	15	True	ATTAAA	-17	NA	116734103	116740566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116734601_116739079_116739185_116739726_116739965_116740041_116740127_116740215
transcript_10877.nic	chr11	+	1185	5	NIC	ENSMUSG00000090266.11	novel	847	4	NA	NA	-37	0	intron_retention	FALSE	canonical	3	38	junction_2	48.2668364407696	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCAATGGGTATGAAGA	8908	False	NA	17	True	CATAAA	-17	NA	116734343	116740455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_116734601_116736588_116736772_116739079_116739185_116739726_116740127_116740215
transcript_10880.known	chr11	+	847	4	FSM	ENSMUSG00000090266.11	ENSMUST00000176799.8	847	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	14.8996644257513	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCAATGGGTATGAAGA	9063	False	NA	17	True	CATAAA	-17	NA	116734498	116740455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116734601_116739079_116739185_116739726_116740127_116740215
transcript_10883.known	chr11	+	541	4	FSM	ENSMUSG00000090266.11	ENSMUST00000140869.2	541	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	46.2048578494609	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGGGGCCACATATCAAA	9065	False	NA	NA	False	NA	NA	NA	116734500	116739879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116734601_116736588_116736772_116739079_116739185_116739726
transcript_10884.known	chr11	+	1785	3	FSM	ENSMUSG00000090266.11	ENSMUST00000175930.8	1785	3	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	16.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAATACATAAGAGAAG	8945	False	NA	NA	False	NA	NA	NA	116734380	116741186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116734601_116739079_116739185_116739726
transcript_10886.known	chr11	+	585	2	FSM	ENSMUSG00000090266.11	ENSMUST00000128784.2	585	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATCAAAGTCTATGCAAT	8951	False	NA	24	True	AATAAA	-29	NA	116734386	116736959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116734601_116736588
transcript_10888.known	chr11	+	419	2	FSM	ENSMUSG00000020818.17	ENSMUST00000151944.3	419	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTTATTTTGCATGTCAT	NA	False	NA	NA	False	NA	NA	NA	116744654	116745542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116745000_116745468
transcript_10889.known	chr11	-	620	3	FSM	ENSMUSG00000034120.19	ENSMUST00000176834.8	620	3	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_1	811.5	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAATGTGTCCTGGTCTTT	7011	False	NA	-10	True	ATTAAA	-26	NA	116742912	116740731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_116741180_116741681_116741788_116742846
transcript_1089.known	chr1	-	10012	13	FSM	ENSMUSG00000026019.16	ENSMUST00000027173.15	10012	13	0	0	0	0	multi-exon	FALSE	canonical	3	863	junction_12	56.5618515923547	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTACTGATGTTTGCCTGC	NA	False	NA	NA	False	CATAAA	-13	NA	60137067	60108943	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_60117401_60119677_60119751_60121195_60121329_60121449_60121556_60121667_60121809_60122913_60123000_60124869_60124916_60126204_60126360_60127199_60127316_60128410_60128518_60130178_60130274_60133590_60133686_60136665
transcript_10890.known	chr11	+	427	2	FSM	ENSMUSG00000090266.11	ENSMUST00000176765.2	427	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCCTCCACCCCTCAGT	8975	False	NA	-54	True	NA	NA	NA	116734410	116736881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116734601_116736644
transcript_10892.known	chr11	+	422	3	FSM	ENSMUSG00000086859.5	ENSMUST00000232907.2	422	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	299	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTTCCATTGTTCAAT	707	False	NA	20	True	AATAAA	-16	NA	116967440	116969781	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116967588_116967933_116968029_116969601
transcript_10893.known	chr11	+	389	3	FSM	ENSMUSG00000086859.5	ENSMUST00000233685.2	389	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	307	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTTCCATTGTTCAAT	556	False	NA	20	True	AATAAA	-16	NA	116967289	116969781	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116967404_116967933_116968029_116969601
transcript_10895.known	chr11	+	600	2	FSM	ENSMUSG00000086859.5	ENSMUST00000149822.3	600	2	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_1	0	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTTCCATTGTTCAAT	875	False	NA	20	True	AATAAA	-16	NA	116967608	116969781	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116968029_116969601
transcript_10896.known	chr11	+	1090	3	FSM	ENSMUSG00000086859.5	ENSMUST00000233355.2	1090	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTGTTTCCATTGTTCA	880	False	NA	18	True	AATAAA	-14	NA	116967613	116969779	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116968029_116968668_116969166_116969601
transcript_10897.known	chr11	+	2153	1	FSM	ENSMUSG00000086859.5	ENSMUST00000182811.2	2153	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTGTTTCCATTGTTCAA	894	False	NA	19	True	AATAAA	-15	NA	116967627	116969780	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116967600_116969800
transcript_10898.known	chr11	+	193	1	FSM	ENSMUSG00002076896.1	ENSMUST00020182044.1	193	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGCTGAAGCTGTGGGG	1335	False	NA	25	True	NA	NA	NA	116968068	116968261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_116968100_116968300
transcript_10899.known	chr11	+	2866	17	FSM	ENSMUSG00000020823.17	ENSMUST00000021177.15	2866	17	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_16	82.8488599423673	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGAGTGTCCTTTTCTTCT	NA	False	NA	5	True	AATAAA	-15	NA	117005997	117050091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626_117047729_117049579
transcript_10900.known	chr11	+	4654	16	FSM	ENSMUSG00000020823.17	ENSMUST00000090433.6	4654	16	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_5	24.9420662068455	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTGTCCTTTTCTTCTTGG	NA	False	NA	8	True	AATAAA	-18	NA	117006063	117050094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626
transcript_10902.known	chr11	+	1047	3	FSM	ENSMUSG00000020823.17	ENSMUST00000146585.2	1047	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	191.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGGATTGAAGGAATAGT	NA	False	NA	NA	False	AATAAA	-15	NA	117006077	117019589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_117006178_117007985_117008079_117018735
transcript_10903.known	chr11	+	2589	17	FSM	ENSMUSG00000020823.17	ENSMUST00000103026.10	2589	17	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_16	87.2585955651362	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTCTTCAAATCTTTTGA	NA	False	NA	3	True	ATTAAA	-17	NA	117006063	117048385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_117006178_117007985_117008079_117032243_117032394_117032487_117032620_117034112_117034242_117034606_117034842_117035674_117035785_117037933_117038124_117039360_117039450_117039971_117040043_117040984_117041157_117041429_117041565_117043969_117044105_117046045_117046298_117047186_117047366_117047626_117047729_117048084
transcript_10904.known	chr11	+	3616	12	FSM	ENSMUSG00000059248.14	ENSMUST00000093907.11	3616	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	260.952736292441	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTCTTTGGCAAGACCT	3698	False	NA	103	True	AATAAA	-28	NA	117090486	117253151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_117090600_117109700_117109758_117181223_117181863_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
transcript_10908.nic	chr11	+	2921	10	NIC	ENSMUSG00000059248.14	novel	647	4	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_1	178.114819397177	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTCTGGAGTTCTCT	NA	False	NA	91	True	AATAAA	-16	NA	117198971	117253139	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_117199098_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
transcript_10912.known	chr11	+	2924	10	FSM	ENSMUSG00000059248.14	ENSMUST00000100193.8	2924	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	196.831569283656	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACTTTTTTTCTGGAGT	NA	False	NA	86	True	AATAAA	-11	NA	117222545	117253134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_117222680_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
transcript_10915.known	chr11	+	2932	10	FSM	ENSMUSG00000059248.14	ENSMUST00000106349.2	2932	10	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_1	107.436803129406	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTCTCTTTGGCAAGACC	NA	False	NA	102	True	AATAAA	-27	NA	117223170	117253150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_117223297_117242254_117242447_117242974_117243104_117243432_117243515_117243913_117244052_117245635_117245754_117247160_117247257_117247438_117247536_117250244_117250297_117251248
transcript_10918.known	chr11	+	1784	2	FSM	ENSMUSG00000054418.7	ENSMUST00000155384.2	1784	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGTTGTGACCAAATAC	NA	False	NA	NA	False	NA	NA	NA	117502072	117504683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_117502261_117503087
transcript_10919.known	chr11	-	2865	20	FSM	ENSMUSG00000025572.19	ENSMUST00000026659.10	2865	20	0	0	0	0	multi-exon	TRUE	canonical	3	224	junction_9	41.6618095045227	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTGTGCTTCAGGATG	NA	False	NA	-4	True	ATTAAA	-15	NA	117671465	117656813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663772_117663925_117664188_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117671361
transcript_10921.nnic	chr11	-	2944	20	NNC	ENSMUSG00000025572.19	novel	2865	20	NA	NA	-72	0	at_least_one_novel_splicesite	TRUE	canonical	3	72	junction_9	62.8793418727409	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTGTGCTTCAGGATG	NA	False	NA	-4	True	ATTAAA	-15	NA	117671556	117656813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661613_117663498_117663679_117663772_117663925_117664200_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117671361
transcript_10922.nic	chr11	-	2972	20	NIC	ENSMUSG00000025572.19	novel	2865	20	NA	NA	-72	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_7	66.6673222497775	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTGTGCTTCAGGATG	NA	False	NA	-4	True	ATTAAA	-15	NA	117671556	117656813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_117657160_117658391_117658460_117659747_117659827_117659931_117660109_117660218_117660353_117661294_117661371_117661516_117661629_117663498_117663679_117663772_117663925_117664188_117664345_117665047_117665193_117665833_117666025_117666414_117666673_117666879_117666977_117667063_117667170_117669069_117669229_117669530_117669627_117669758_117669875_117669988_117670118_117671361
transcript_10928.known	chr11	+	2327	11	FSM	ENSMUSG00000017718.16	ENSMUST00000073388.13	2327	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	8.17312669668102	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGGTTTTCTGTTTGTTT	NA	False	NA	15	True	NA	NA	NA	117716749	117730734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_117716833_117718904_117718996_117723170_117723276_117723353_117723403_117725592_117725679_117725771_117725845_117725970_117726069_117726328_117726408_117726491_117726634_117727233_117727339_117729318
transcript_10943.known	chr11	-	1440	7	FSM	ENSMUSG00000025574.14	ENSMUST00000026661.4	1440	7	0	0	0	0	multi-exon	FALSE	canonical	3	796	junction_5	107.729084074615	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	False	NA	-17	True	ATTAAA	-16	NA	117716918	117706351	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716426_117716459_117716539
transcript_10946.nic	chr11	-	1202	6	NIC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	149	junction_5	366.911215418662	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	False	NA	-17	True	ATTAAA	-16	NA	117716712	117706351	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_117706966_117707272_117707393_117707927_117708018_117712922_117713017_117715496_117715608_117716539
transcript_10949.nnic	chr11	-	1146	6	NIC	ENSMUSG00000025574.14	novel	1440	7	NA	NA	-21	0	combination_of_known_splicesites	FALSE	canonical	3	49	junction_2	399.354178643469	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGTGTTTCTCCTTAGCC	NA	False	NA	-17	True	ATTAAA	-16	NA	117716714	117706351	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_117706966_117707272_117707393_117712922_117713017_117715496_117715608_117716426_117716459_117716539
transcript_10953.known	chr11	+	1402	4	FSM	ENSMUSG00000048277.16	ENSMUST00000120928.2	1402	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	286.604256772296	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTTGTGCTGGGTGGCGC	NA	False	NA	14	True	AATAAA	-14	NA	117700521	117705109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_117700630_117703374_117703523_117703871_117704012_117704103
transcript_10955.known	chr11	-	786	3	FSM	ENSMUSG00000025574.14	ENSMUST00000154790.2	786	3	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_2	493.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATCAGCCTGTGCTCCAG	NA	False	NA	NA	False	NA	NA	NA	117716663	117712465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_117713017_117715496_117715608_117716539
transcript_10956.known	chr11	+	1520	4	FSM	ENSMUSG00000048277.16	ENSMUST00000026649.14	1520	4	0	0	0	0	multi-exon	FALSE	canonical	3	588	junction_1	45.536310297998	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTTGTGCTGGGTGGCGC	NA	False	NA	14	True	AATAAA	-14	NA	117700493	117705109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_117700630_117703284_117703523_117703871_117704012_117704103
transcript_10957.nnic	chr11	+	859	3	NIC	ENSMUSG00000017716.16	novel	947	4	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	60	junction_1	950.5	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTAAGCTCTGTCTGTCT	NA	False	NA	29	True	AATAAA	-18	NA	117740054	117746558	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_117740288_117743488_117743607_117746050
transcript_10958.known	chr11	+	947	4	FSM	ENSMUSG00000017716.16	ENSMUST00000081387.11	947	4	0	0	0	0	multi-exon	FALSE	canonical	3	1683	junction_1	206.515536138729	1778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTAAGCTCTGTCTGTCT	NA	False	NA	29	True	AATAAA	-18	NA	117740076	117746558	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_117740288_117740579_117740690_117743488_117743607_117746050
transcript_10959.known	chr11	+	3334	3	FSM	ENSMUSG00000017716.16	ENSMUST00000093906.5	3334	3	0	0	0	0	multi-exon	FALSE	canonical	3	1683	junction_1	252.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTCTTGGAGAAATGG	NA	False	NA	40	True	AATAAA	-29	NA	117740144	117746569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_117740288_117740579_117740690_117743488
transcript_10960.known	chr11	-	2552	2	FSM	ENSMUSG00000053113.4	ENSMUST00000054002.4	2552	2	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_1	0	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTTGAGCCTTTCTTTC	NA	False	NA	NA	False	AATAAA	-30	NA	117860012	117856904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_117859145_117859700
transcript_10964.known	chr11	+	2863	10	FSM	ENSMUSG00000017715.12	ENSMUST00000132676.8	2863	10	0	0	0	0	multi-exon	TRUE	canonical	1	116	junction_9	67.5268579397108	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117877117	117914837	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_117877840_117888266_117888457_117891024_117891103_117892441_117892542_117893176_117893367_117894166_117894346_117896195_117896718_117905399_117905549_117910432_117910559_117914230
transcript_10968.nnic	chr11	+	971	4	NNC	ENSMUSG00000017715.12	novel	3113	3	NA	NA	-4303	0	at_least_one_novel_splicesite	FALSE	canonical	1	16	junction_1	147.648983139818	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117898865	117914837	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_117898955_117905399_117905549_117910432_117910559_117914230
transcript_10969.nnic	chr11	+	747	4	NNC	ENSMUSG00000017715.12	novel	3113	3	NA	NA	-4303	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	169.36023408371	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117898865	117914837	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_117898955_117905399_117905549_117910432_117910559_117914454
transcript_10970.nnic	chr11	+	787	4	NNC	ENSMUSG00000017715.12	novel	3113	3	NA	NA	-4278	0	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	151.078346121033	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCAGACTGCTGTTGTCT	NA	False	NA	4	True	TATAAA	-14	NA	117898890	117914751	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_117898955_117905472_117905549_117910432_117910559_117914230
transcript_10971.nnic	chr11	+	873	4	NNC	ENSMUSG00000017715.12	novel	3113	3	NA	NA	-4278	0	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	151.078346121033	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGTTGCTCAAGTGAT	NA	False	NA	16	True	AATAAA	-14	NA	117898890	117914837	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_117898955_117905472_117905549_117910432_117910559_117914230
transcript_10972.known	chr11	-	3135	13	FSM	ENSMUSG00000017132.18	ENSMUST00000017276.14	3135	13	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	8.05665701282003	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCACTTCATGTTCTGCTC	8632	False	NA	-6	True	AATAAA	-16	NA	118139386	118055000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_118056921_118059841_118059997_118061651_118061724_118068045_118068123_118073045_118073158_118073590_118073740_118074707_118074821_118075797_118075879_118076206_118076326_118076585_118076653_118083222_118083288_118084440_118084524_118139264
transcript_10973.known	chr11	-	3179	13	FSM	ENSMUSG00000017132.18	ENSMUST00000106305.9	3179	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	13.1368332899862	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTCTGCTCTGCTGTGGG	8600	False	NA	3	True	AATAAA	-25	NA	118139418	118054991	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_118056921_118059841_118059997_118061651_118061724_118068045_118068125_118073044_118073158_118073590_118073740_118074707_118074821_118075797_118075879_118076206_118076326_118076585_118076653_118083222_118083288_118084440_118084524_118139264
transcript_10975.known	chr11	-	2873	5	FSM	ENSMUSG00000025575.15	ENSMUST00000106288.8	2873	5	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_4	37.662979170533	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTCTTGTCTATGTTGGC	8992	False	NA	-1	True	AATAAA	-17	NA	118309878	118297114	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399_118308481_118309755
transcript_10976.known	chr11	-	1476	5	FSM	ENSMUSG00000025575.15	ENSMUST00000106287.8	1476	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	67.913547985656	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCGTTTGCTTTTTTTCTT	8992	False	NA	NA	False	CATAAA	-17	NA	118309878	118298469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399_118308481_118309797
transcript_10978.known	chr11	-	2995	5	FSM	ENSMUSG00000025575.15	ENSMUST00000092378.10	2995	5	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_4	68.7786304021823	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCTCTTGTCTATGTTGG	9021	False	NA	-2	True	AATAAA	-16	NA	118309849	118297115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_118298921_118299506_118299711_118301678_118302338_118308399_118308633_118309755
transcript_10979.known	chr11	+	4064	14	FSM	ENSMUSG00000033857.13	ENSMUST00000135383.9	4064	14	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_11	10.2772224737595	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATGTTGAGTCTTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	118367654	118380035	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_118367931_118369708_118369780_118369911_118370114_118372101_118372251_118372699_118372858_118373357_118373507_118373707_118373874_118375243_118375348_118375665_118375775_118375949_118376141_118376582_118376732_118377273_118377380_118377647_118377763_118377916
transcript_10985.known	chr11	+	3807	5	FSM	ENSMUSG00000025577.8	ENSMUST00000026662.8	3807	5	0	0	0	0	multi-exon	TRUE	canonical	3	204	junction_1	10.9630059746403	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGCTGTTCTCTTCCCC	NA	False	NA	13	True	AATAAA	-15	NA	118913787	118922096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_118914007_118914083_118914128_118915000_118915067_118917275_118917382_118918724
transcript_10986.known	chr11	-	3580	5	FSM	ENSMUSG00000025578.10	ENSMUST00000026663.8	3580	5	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_4	2.91547594742265	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACGTGTCTTGGCTTCAT	NA	False	NA	NA	False	AATATA	-14	NA	118931795	118927130	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_118930346_118930757_118930825_118930919_118930986_118931173_118931218_118931607
transcript_10988.known	chr11	+	3633	20	FSM	ENSMUSG00000025579.15	ENSMUST00000106259.9	3633	20	0	0	0	0	multi-exon	TRUE	canonical	3	393	junction_7	40.3001893687597	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTCACGTCACCTCATG	NA	False	NA	19	True	AATAAA	-20	NA	119158712	119176280	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_119159049_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
transcript_10989.known	chr11	+	3363	20	FSM	ENSMUSG00000025579.15	ENSMUST00000026666.13	3363	20	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	100.783495768854	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTCACGTCACCTCATG	NA	False	NA	19	True	AATAAA	-20	NA	119158851	119176280	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_119158918_119160913_119161505_119163695_119163842_119164800_119164967_119165040_119165138_119165466_119165587_119165681_119165801_119165885_119166018_119167667_119167779_119168326_119168441_119168519_119168605_119169090_119169209_119169701_119169836_119171237_119171390_119171938_119172088_119173999_119174142_119174485_119174639_119174884_119175050_119175272_119175426_119175830
transcript_1099.known	chr1	+	2223	13	FSM	ENSMUSG00000049439.14	ENSMUST00000060608.13	2223	13	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	9.38083151964686	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGGATTGTTTTGTTT	NA	False	NA	28	True	AATAAA	-16	NA	60382481	60427219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_60382617_60391279_60391330_60392067_60392235_60393672_60393816_60402348_60402517_60405807_60405887_60410379_60410496_60411748_60411804_60415225_60415347_60418532_60418645_60421562_60421628_60426063_60426154_60426297
transcript_10992.known	chr11	-	1509	12	FSM	ENSMUSG00000025580.16	ENSMUST00000026667.15	1509	12	0	0	0	0	multi-exon	FALSE	canonical	2	960	junction_1	150.634415963708	2018	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAGTGCAGATCTTTGT	NA	False	NA	-10	True	ATTAAA	-20	NA	119190915	119179188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_119179386_119179485_119179614_119179694_119179803_119183644_119183761_119184384_119184524_119184717_119184860_119185150_119185232_119185396_119185530_119186298_119186362_119186892_119186960_119188630_119188704_119190653
transcript_10995.known	chr11	+	2695	17	FSM	ENSMUSG00000039908.15	ENSMUST00000050880.8	2695	17	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	16.3122605346408	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGATGTGTGTGTGGTGT	NA	False	NA	NA	False	ATTAAA	-24	NA	119246382	119271905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_119246462_119247633_119247860_119248803_119248997_119250122_119250209_119253042_119253123_119254225_119254369_119259489_119259666_119260018_119260092_119261574_119261626_119263936_119263998_119265310_119265367_119265590_119265732_119267607_119267736_119267994_119268095_119268519_119268654_119270684_119270758_119271010
transcript_10996.nnic	chr11	+	1360	3	NNC	ENSMUSG00000039908.15	novel	2695	17	NA	NA	16182	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	43	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTAAAATACAATATTCTG	1605	False	NA	NA	False	ATTAAA	-45	NA	119269656	119271875	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_119270079_119270684_119270758_119271010
transcript_11.known	ERCC-00035	+	1114	1	FSM	ERCC-00035A	DQ459413	1114	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1114	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00035_+_0_1100
transcript_11000.known	chr11	+	5070	9	FSM	ENSMUSG00000039850.17	ENSMUST00000106244.9	5070	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	7.28010988928052	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAGAAAAA	6254	False	NA	NA	False	NA	NA	NA	119382172	119402249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_119382286_119382610_119382783_119390352_119390488_119390671_119390712_119391416_119391530_119393118_119393188_119393524_119393654_119395916_119395994_119398027
transcript_11002.known	chr11	+	5126	8	FSM	ENSMUSG00000039850.17	ENSMUST00000106245.9	5126	8	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	3.65892813567591	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAAAATACACTACCAAC	6537	False	NA	NA	False	NA	NA	NA	119382455	119402263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_119382783_119390352_119390488_119390671_119390712_119391416_119391530_119393118_119393188_119393524_119393654_119395916_119395994_119398027
transcript_11003.nnic	chr11	+	583	3	NNC	ENSMUSG00000087675.2	novel	1705	4	NA	NA	17261	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	3	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTAGAACTAACCTCACTG	2112	False	NA	NA	False	ATTAAA	-17	NA	119456716	119459872	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_119456892_119459088_119459263_119459638
transcript_11004.known	chr11	+	1557	8	FSM	ENSMUSG00000025371.13	ENSMUST00000026434.13	1557	8	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_5	11.6303613925986	254	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTTTAGTGTCTTGGT	NA	False	NA	18	True	ATTAAA	-33	NA	119804635	119810374	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_119804764_119806238_119806349_119806457_119806546_119806850_119806938_119807506_119807573_119807754_119807836_119808809_119808865_119809432
transcript_11007.known	chr11	+	2442	15	FSM	ENSMUSG00000025372.17	ENSMUST00000106233.2	2442	15	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_13	13.1158495799579	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGTGTGTGGTCTGTTGT	NA	False	NA	10	True	AATAAA	-16	NA	119833588	119897608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119893863_119893912_119897184
transcript_11008.known	chr11	+	2394	14	FSM	ENSMUSG00000025372.17	ENSMUST00000026436.10	2394	14	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_13	8.07215976759687	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGTGTGTGGTCTGTTGT	NA	False	NA	10	True	AATAAA	-16	NA	119833588	119897608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377_119891413_119897184
transcript_11010.known	chr11	+	4005	13	FSM	ENSMUSG00000025372.17	ENSMUST00000106231.8	4005	13	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_12	7.16278964898143	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGAGTTGGTCTGTGCCTCC	NA	False	NA	NA	False	AATAAA	-17	NA	119833588	119893447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_119834075_119847927_119848004_119850982_119851070_119871614_119871677_119872218_119872291_119872814_119872953_119884521_119884675_119887348_119887574_119887714_119887917_119888314_119888517_119889459_119889529_119889960_119890124_119891377
transcript_11011.nic	chr11	-	2750	13	NIC	ENSMUSG00000025377.15	novel	2770	13	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_9	21.0797098335501	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCCACTTGGGCTGGT	NA	False	NA	-8	True	AATAAA	-16	NA	119989521	119981356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_119982839_119983676_119983812_119984070_119984150_119984242_119984357_119984516_119984692_119984939_119985144_119986169_119986242_119986359_119986436_119986629_119986698_119987390_119987501_119987703_119987796_119988334_119988408_119989451
transcript_11012.known	chr11	-	2770	13	FSM	ENSMUSG00000025377.15	ENSMUST00000093901.12	2770	13	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_11	8.42944574426786	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGCCACTTGGGCTGGT	NA	False	NA	-8	True	AATAAA	-16	NA	119989557	119981356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_119982839_119983676_119983812_119984070_119984150_119984242_119984357_119984516_119984692_119984939_119985144_119986169_119986242_119986359_119986436_119986629_119986698_119987406_119987501_119987703_119987796_119988334_119988408_119989451
transcript_11015.known	chr11	+	427	3	FSM	ENSMUSG00000078572.4	ENSMUST00000185558.2	427	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	466	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAGATGATTTAATTTTG	NA	False	NA	19	True	NA	NA	NA	119989769	119991189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_119989892_119989973_119990089_119990999
transcript_11016.known	chr11	+	401	2	FSM	ENSMUSG00000078572.4	ENSMUST00000186913.2	401	2	0	0	0	0	multi-exon	FALSE	canonical	3	883	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATAAGGAACTGGTCTCTC	NA	False	NA	6	True	TATAAA	-6	NA	119989924	119991240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_119990085_119990999
transcript_11017.known	chr11	-	4578	17	FSM	ENSMUSG00000061306.17	ENSMUST00000103018.11	4578	17	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	179.74077471111	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCATGTATGTGTATTA	4996	False	NA	NA	False	ATTAAA	-5	NA	120042172	119994785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_119996863_119997259_119997437_119999292_119999317_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
transcript_11018.known	chr11	-	4052	17	FSM	ENSMUSG00000061306.17	ENSMUST00000179094.8	4052	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	187.660889305683	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTCTCGAGTCGAGTTGGT	5030	False	NA	-12	True	AATAAA	-12	NA	120042138	119995277	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_119996863_119997259_119997437_120000197_120000222_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
transcript_1102.known	chr1	+	2056	12	FSM	ENSMUSG00000049439.14	ENSMUST00000148443.3	2056	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	29.4898777983562	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGAGGATTGTTTTGTTT	NA	False	NA	28	True	AATAAA	-16	NA	60382481	60427219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_60382617_60391279_60391330_60393672_60393816_60402348_60402517_60405807_60405887_60410379_60410496_60411748_60411804_60415225_60415347_60418532_60418645_60421562_60421628_60426063_60426154_60426297
transcript_11021.known	chr11	-	4554	16	FSM	ENSMUSG00000061306.17	ENSMUST00000045402.14	4554	16	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_1	66.2227218474814	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCATGTATGTGTATTA	4996	False	NA	NA	False	ATTAAA	-5	NA	120042172	119994785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_119996863_119997259_119997437_120000257_120000363_120000891_120001363_120001663_120001832_120007690_120007848_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
transcript_11022.known	chr11	-	1672	11	FSM	ENSMUSG00000061306.17	ENSMUST00000076697.13	1672	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	172.084979007466	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAATGCTGCCTTTCCTT	4996	False	NA	NA	False	AATAAA	-17	NA	120042172	120009697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120009971_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
transcript_11023.known	chr11	-	1947	11	FSM	ENSMUSG00000061306.17	ENSMUST00000053692.9	1947	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	172.084979007466	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTTGGCTTTGTTTTTT	4996	False	NA	NA	False	NA	NA	NA	120042172	120014669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120015218_120019248_120019356_120020026_120020139_120023502_120023686_120025605_120025709_120028682_120028808_120029811_120029956_120031418_120031513_120032425_120032472_120038546_120038665_120041805
transcript_11028.nic	chr11	-	1235	2	ISM	ENSMUSG00000075389.4	ENSMUST00000145437.2	646	3	-105	253	-105	-253	5prime_fragment	FALSE	canonical	1	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTTTTTTTTCTCTCTGG	6038	False	NA	-1	True	AATAAA	-17	NA	120080783	120078785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_120079503_120080265
transcript_11030.known	chr11	-	1952	6	FSM	ENSMUSG00000062825.16	ENSMUST00000071555.13	1952	6	0	0	0	0	multi-exon	TRUE	canonical	3	5636	junction_4	454.292680988809	7568	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTTTTTCTGGTTTGG	NA	False	NA	-21	True	AATAAA	-18	NA	120239368	120236515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120237360_120237462_120237645_120237736_120238176_120238461_120238702_120238794_120238924_120239250
transcript_11031.known	chr11	+	619	2	FSM	ENSMUSG00000043644.5	ENSMUST00000143813.2	619	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGGAGCTCAACGTCTAAA	2995	False	NA	NA	False	AATAAA	-19	NA	120239503	120242016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120239689_120241582
transcript_11032.known	chr11	-	3193	10	FSM	ENSMUSG00000025384.16	ENSMUST00000026448.10	3193	10	0	0	0	0	multi-exon	FALSE	canonical	1	16	junction_4	19.8612470857816	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTGTGTTGTGCTCTG	NA	False	NA	-3	True	NA	NA	NA	120269590	120260387	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120260879_120261109_120261246_120261520_120261608_120262935_120263053_120263932_120264070_120264707_120265478_120266242_120266400_120267531_120268488_120269153_120269273_120269367
transcript_11033.known	chr11	-	1779	3	FSM	ENSMUSG00000025384.16	ENSMUST00000148520.2	1779	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	20.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	ATTAAA	-29	NA	120269535	120266995	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120268488_120269153_120269273_120269367
transcript_11034.known	chr11	-	4121	17	FSM	ENSMUSG00000039703.16	ENSMUST00000044271.15	4121	17	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_10	42.5235229020362	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGCTCCCAGTGCATT	NA	False	NA	-8	True	AATAAA	-16	NA	120328534	120271195	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120273453_120274122_120274226_120275368_120275486_120276595_120276692_120280193_120280266_120295031_120295193_120299598_120299726_120300437_120300510_120302483_120302571_120304385_120304566_120307082_120307207_120309070_120309166_120309894_120309944_120312190_120312368_120319349_120319463_120323873_120323955_120328324
transcript_11036.known	chr11	-	813	2	FSM	ENSMUSG00000039670.3	ENSMUST00000044007.3	813	2	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGCAGGGGCTTTTGTGT	959	False	NA	-6	True	AATAAA	-18	NA	120348894	120347431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120347989_120348638
transcript_11037.known	chr11	-	372	2	FSM	ENSMUSG00000039670.3	ENSMUST00000137632.2	372	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCTCTACCAGGATGGCG	9	True	NA	NA	False	NA	NA	NA	120348762	120347710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120347989_120348668
transcript_11038.known	chr11	+	2778	6	FSM	ENSMUSG00000049957.15	ENSMUST00000058370.14	2778	6	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	16.7164589551735	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATGAGAACATTCTTGTT	208	False	NA	NA	False	AATAAA	-20	NA	120348940	120355184	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120349105_120349437_120349572_120350867_120351091_120352541_120352625_120352831_120352912_120353090
transcript_11041.known	chr11	-	588	5	FSM	ENSMUSG00000057594.13	ENSMUST00000141654.8	588	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	74.6408065336917	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGGTGTTTGATAGGA	NA	False	NA	-91	True	NA	NA	NA	120358291	120356416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120356648_120356809_120356926_120357479_120357559_120358007_120358067_120358188
transcript_11042.known	chr11	-	911	5	FSM	ENSMUSG00000057594.13	ENSMUST00000076921.7	911	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	70.9048658414922	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCTCCCACCAAGAAGTTG	NA	False	NA	62	True	NA	NA	NA	120358426	120356263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120356648_120356809_120356926_120357479_120357594_120358007_120358067_120358188
transcript_11044.known	chr11	-	429	4	FSM	ENSMUSG00000057594.13	ENSMUST00000150688.2	429	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	81.6999932000541	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGACCATAGGGTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	120358259	120356740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120356926_120357479_120357594_120358007_120358067_120358188
transcript_11048.known	chr11	+	2903	22	FSM	ENSMUSG00000025793.18	ENSMUST00000106203.9	2903	22	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_14	76.3896503775692	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCATGATTGATTGTTCG	8182	False	NA	13	True	AATAAA	-14	NA	120358460	120374805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120358590_120359834_120359920_120360425_120360502_120360860_120360954_120362305_120362430_120363428_120363482_120365081_120365151_120365945_120366071_120367954_120368034_120368114_120368214_120368344_120368441_120369161_120369201_120369287_120369432_120369520_120369581_120369912_120370124_120370378_120370552_120370624_120370766_120370849_120371025_120373355_120373490_120373569_120373690_120373840_120373928_120374214
transcript_11049.known	chr11	+	2900	22	FSM	ENSMUSG00000025793.18	ENSMUST00000106205.9	2900	22	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_14	47.8204313112466	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCATGATTGATTGTTCG	8182	False	NA	13	True	AATAAA	-14	NA	120358460	120374805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120358590_120359834_120359920_120360425_120360502_120360860_120360954_120362305_120362430_120363428_120363482_120365081_120365151_120365945_120366071_120367954_120368034_120368114_120368214_120368344_120368441_120369161_120369201_120369287_120369432_120369520_120369581_120369915_120370124_120370378_120370552_120370624_120370766_120370849_120371025_120373355_120373490_120373569_120373690_120373840_120373928_120374214
transcript_11055.known	chr11	+	1316	5	FSM	ENSMUSG00000039640.8	ENSMUST00000043627.8	1316	5	0	0	0	0	multi-exon	FALSE	canonical	3	1076	junction_2	33.5186515241887	427	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAAGTGTAACCCTGGCC	8955	False	NA	NA	False	NA	NA	NA	120375438	120379891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120375595_120376068_120376256_120376481_120376569_120378922_120379061_120379143
transcript_11061.known	chr11	+	2023	11	FSM	ENSMUSG00000025792.10	ENSMUST00000026899.4	2023	11	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_8	8.74356906531881	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGGGGGCTGGCAGATC	NA	False	NA	23	True	AATAAA	-37	NA	120382665	120390013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120382903_120385302_120385423_120385785_120385901_120385985_120386035_120386271_120386314_120387248_120387293_120387461_120387533_120387839_120387933_120388209_120388288_120388745_120388803_120388896
transcript_11063.known	chr11	+	1658	10	FSM	ENSMUSG00000025792.10	ENSMUST00000144706.8	1658	10	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	8.28355503094036	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTTCTGCTTACCAAATG	NA	False	NA	NA	False	NA	NA	NA	120382713	120389419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120382903_120385302_120385423_120385785_120385901_120385985_120386035_120386271_120386314_120387248_120387293_120387461_120387533_120387839_120388288_120388745_120388803_120388896
transcript_11066.known	chr11	-	1205	5	FSM	ENSMUSG00000061111.9	ENSMUST00000034913.5	1205	5	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_4	30.2861354418156	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCCATGGCAGTCTGT	NA	False	NA	-24	True	AATAAA	-17	NA	120440553	120433713	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120434575_120434729_120434832_120435506_120435626_120435702_120435755_120440482
transcript_11067.known	chr11	-	1256	4	FSM	ENSMUSG00000061111.9	ENSMUST00000135515.2	1256	4	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_3	32.7244387100664	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTCCATGGCAGTCTGT	NA	False	NA	-24	True	AATAAA	-17	NA	120440527	120433713	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120434575_120434729_120434832_120435506_120435755_120440482
transcript_11072.known	chr11	-	2861	11	FSM	ENSMUSG00000025130.12	ENSMUST00000026122.11	2861	11	0	0	0	0	multi-exon	FALSE	canonical	3	1798	junction_7	89.3174674965653	877	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCACTGCTGCTTTATTTT	3367	False	NA	-4	True	AATAAA	-21	NA	120464079	120451123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120452087_120452986_120453074_120453189_120453372_120453480_120453602_120454030_120454232_120454428_120454555_120454641_120454747_120458743_120458882_120458999_120459134_120462346_120462554_120463482
transcript_11080.known	chr11	-	2150	6	FSM	ENSMUSG00000025132.14	ENSMUST00000067936.6	2150	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	1338.58961597646	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATTGTGTGGTCTGTGC	NA	False	NA	-15	True	AATAAA	-17	NA	120472206	120468934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120471815
transcript_11082.known	chr11	-	1867	6	FSM	ENSMUSG00000025132.14	ENSMUST00000106197.10	1867	6	0	0	0	0	multi-exon	TRUE	canonical	3	3168	junction_5	160.793780974265	1722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGGTCTGTGCAGCTT	NA	False	NA	-10	True	AATAAA	-22	NA	120472450	120468929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120470257_120470341_120470406_120470493_120470571_120470792_120470877_120471007_120471220_120472347
transcript_11088.nnic	chr11	-	942	6	NNC	ENSMUSG00000025134.3	novel	3527	6	NA	NA	123	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_5	1676.74045695808	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGCTGTCTGGTCCATC	4563	False	NA	-7	True	AATAAA	-19	NA	120488934	120485334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_120485694_120485805_120485981_120486080_120486145_120486745_120486894_120488460_120488593_120488870
transcript_11089.known	chr11	-	3527	6	FSM	ENSMUSG00000025134.3	ENSMUST00000026125.3	3527	6	0	0	0	0	multi-exon	FALSE	canonical	3	3672	junction_5	281.391257859941	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATCACACCTCGTCTCT	4306	False	NA	3	True	AATAAA	-29	NA	120489191	120482946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120485694_120485805_120485981_120486080_120486145_120486745_120486894_120488460_120488593_120488930
transcript_11096.known	chr11	+	3229	3	FSM	ENSMUSG00000025135.13	ENSMUST00000026128.10	3229	3	0	0	0	0	multi-exon	FALSE	canonical	3	903	junction_1	470.5	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCACTTTTGATCATGGT	3900	False	NA	NA	False	NA	NA	NA	120489246	120499024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120489431_120490067_120490195_120496106
transcript_11098.known	chr11	+	962	3	FSM	ENSMUSG00000025135.13	ENSMUST00000093140.5	962	3	0	0	0	0	multi-exon	FALSE	canonical	3	1006	junction_1	419	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGCCAAAACCTTCATCGTA	4011	False	NA	129	True	AATAAA	-17	NA	120489357	120496602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120489697_120490067_120490195_120496106
transcript_111.known	SIRV4	-	570	5	FSM	SIRV4A	SIRV408	570	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2658.88059152719	594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTTGATATTTAGAGCGT	NA	False	NA	NA	False	NA	NA	NA	15122	8323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV4_-_8373_8629_8748_8846_8991_13672_13829_15019
transcript_11103.known	chr11	+	542	2	FSM	ENSMUSG00000044034.12	ENSMUST00000106195.3	542	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGCTAAGGGTTGCTGGA	1208	False	NA	NA	False	AATAAA	-14	NA	120499302	120499919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120499566_120499640
transcript_11104.nic	chr11	-	2082	14	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_7	107.105710100324	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	-6	True	AATAAA	-16	NA	120508779	120500912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120503671_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
transcript_11105.known	chr11	-	1881	14	FSM	ENSMUSG00000025137.16	ENSMUST00000026129.16	1881	14	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_7	79.5574296680368	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	-6	True	AATAAA	-16	NA	120508762	120500912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120503855_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
transcript_11106.known	chr11	-	1486	13	FSM	ENSMUSG00000025137.16	ENSMUST00000106188.4	1486	13	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_7	91.5034911295131	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGAGGCGTGTTGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	120508751	120501242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120502910_120503288_120503428_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
transcript_11108.nic	chr11	-	2461	13	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	-17	0	intron_retention	FALSE	canonical	3	48	junction_6	110.81174601799	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	-6	True	AATAAA	-16	NA	120508779	120500912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120503428_120503671_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
transcript_11109.nic	chr11	-	2277	13	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	-17	0	intron_retention	FALSE	canonical	3	184	junction_6	81.3758000472704	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	-6	True	AATAAA	-16	NA	120508779	120500912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120502532_120502826_120503428_120503855_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
transcript_11116.nic	chr11	-	3000	11	NIC	ENSMUSG00000025137.16	novel	1881	14	NA	NA	-17	0	intron_retention	FALSE	canonical	3	226	junction_5	62.8630256987365	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTAGGCTCCCGACCCC	NA	False	NA	-6	True	AATAAA	-16	NA	120508779	120500912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_120501598_120501701_120501791_120501938_120502005_120502173_120502240_120502453_120503910_120504204_120504250_120504466_120504552_120505156_120505224_120506116_120506279_120506674_120506764_120508589
transcript_11118.known	chr11	-	513	3	FSM	ENSMUSG00000025137.16	ENSMUST00000126148.2	513	3	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_2	25	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCCCCAGAGCAGTGGCA	NA	False	NA	NA	False	NA	NA	NA	120508736	120506001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120506279_120506674_120506764_120508589
transcript_1112.known	chr1	-	2590	19	FSM	ENSMUSG00000025968.17	ENSMUST00000168099.9	2590	19	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_18	163.056757519704	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATATTTAAAGTTATACTAT	NA	False	NA	NA	False	NA	NA	NA	63215891	63182893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215586
transcript_11120.known	chr11	-	597	2	FSM	ENSMUSG00000025137.16	ENSMUST00000160059.2	597	2	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCAAGCATAAGGGGCCC	NA	False	NA	NA	False	NA	NA	NA	120508695	120506272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120506764_120508589
transcript_11122.nic	chr11	-	1818	11	NIC	ENSMUSG00000025138.15	novel	1727	10	NA	NA	3	0	intron_retention	FALSE	canonical	2	6	junction_2	26.3286915740224	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAAGCCTCCAGTCTGAG	NA	False	NA	-49	True	NA	NA	NA	120515837	120509245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_120509876_120509974_120510117_120510988_120511096_120511249_120511331_120511472_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
transcript_11123.known	chr11	-	1727	10	FSM	ENSMUSG00000025138.15	ENSMUST00000080202.12	1727	10	0	0	0	0	multi-exon	FALSE	canonical	2	54	junction_9	11.3376897945103	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTCCCGATGACTGT	NA	False	NA	-1	True	ATTAAA	-15	NA	120515840	120509197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120509876_120510988_120511096_120511249_120511331_120511472_120511710_120511782_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
transcript_11125.known	chr11	-	1755	9	FSM	ENSMUSG00000025138.15	ENSMUST00000153532.8	1755	9	0	0	0	0	multi-exon	FALSE	canonical	2	54	junction_8	11.6344047978399	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTGTCCCGATGACTGT	NA	False	NA	-1	True	ATTAAA	-15	NA	120515795	120509197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120509876_120510988_120511096_120511249_120511331_120511472_120511882_120512806_120512880_120512966_120513038_120515315_120515421_120515498_120515637_120515702
transcript_1113.known	chr1	-	2661	19	FSM	ENSMUSG00000025968.17	ENSMUST00000027111.15	2661	19	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_18	130.918608680223	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATATTAAAGTGTGAAGT	NA	False	NA	NA	False	AATAAA	-31	NA	63215981	63182754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_63183082_63186278_63186352_63186448_63186584_63187554_63187731_63189115_63189271_63190709_63190871_63191933_63192064_63195362_63195492_63196290_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63215744
transcript_11130.known	chr11	-	732	3	FSM	ENSMUSG00000051510.14	ENSMUST00000106180.2	732	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	175.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGGCAGCCCCGTCCCT	9613	False	NA	NA	False	NA	NA	NA	120520974	120520057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120520563_120520643_120520708_120520811
transcript_11133.known	chr11	-	4923	3	FSM	ENSMUSG00000051510.14	ENSMUST00000058162.14	4923	3	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	28	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTGGTATTTCTTTGAA	7358	False	NA	-1	True	AATAAA	-16	NA	120524426	120515942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120520563_120520643_120520708_120524187
transcript_11137.nic	chr11	-	1568	9	NIC	ENSMUSG00000025140.16	novel	2914	8	NA	NA	-3	-1056	combination_of_known_junctions	FALSE	canonical	2	46	junction_1	319.603269695415	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTAGACTACTTCCTGCT	NA	False	NA	-10	True	NA	NA	NA	120534598	120527593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_120528061_120531025_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
transcript_11144.nnic	chr11	-	1856	8	NNC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_7	342.313318705635	64	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534587	120530241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534096_120534505
transcript_11146.known	chr11	-	1861	8	FSM	ENSMUSG00000025140.16	ENSMUST00000026133.15	1861	8	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_7	93.9428832116752	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534574	120530241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534505
transcript_11147.nic	chr11	-	1862	8	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_7	343.012048339592	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534598	120530241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120533984_120534114_120534528
transcript_11149.nic	chr11	-	1745	7	NIC	ENSMUSG00000025140.16	novel	1861	8	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	364.341148132107	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCCCCAGAGCTCCAGTC	NA	False	NA	-16	True	AATAAA	-13	NA	120534587	120530241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_120531175_120531967_120532132_120532254_120532348_120532475_120532698_120532940_120533121_120533717_120533789_120534505
transcript_11163.known	chr11	+	1820	16	FSM	ENSMUSG00000025142.19	ENSMUST00000026135.15	1820	16	0	0	0	0	multi-exon	FALSE	canonical	3	887	junction_3	62.8477525453377	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120563817	120600273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
transcript_11169.nic	chr11	+	1938	16	NIC	ENSMUSG00000025142.19	novel	870	8	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	238.262376383683	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120564143	120600273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_120564441_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
transcript_11170.nic	chr11	+	2114	16	NIC	ENSMUSG00000025142.19	novel	870	8	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	243.577411833601	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120564154	120600273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_120564628_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594428_120594492_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
transcript_11182.known	chr11	+	1690	15	FSM	ENSMUSG00000025142.19	ENSMUST00000106158.9	1690	15	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_10	252.602010107212	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGAGTTTCTTTTCTG	NA	False	NA	13	True	AATAAA	-17	NA	120563881	120600270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120563997_120564865_120564922_120568336_120568452_120569245_120569347_120577469_120577528_120579354_120579429_120579737_120580168_120591969_120592110_120592306_120592389_120593309_120593377_120594897_120594951_120599483_120599536_120599755_120599826_120599896_120600073_120600169
transcript_11194.nnic	chr11	+	588	5	NNC	ENSMUSG00000025142.19	novel	468	3	NA	NA	2618	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	436.370542085508	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	NA	False	NA	16	True	AATAAA	-20	NA	120595957	120600273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_120596144_120599483_120599536_120599755_120599826_120599896_120600073_120600169
transcript_11197.nnic	chr11	+	670	5	NNC	ENSMUSG00000025142.19	novel	468	3	NA	NA	-646	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_1	432.921759674886	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	151	False	NA	16	True	AATAAA	-20	NA	120598837	120600273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_120599106_120599483_120599536_120599755_120599826_120599896_120600073_120600169
transcript_11201.known	chr11	+	2061	2	FSM	ENSMUSG00000025142.19	ENSMUST00000171700.2	2061	2	0	0	0	0	multi-exon	FALSE	canonical	1	28	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	120563851	120566808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120563970_120564865
transcript_11202.known	chr11	+	520	3	FSM	ENSMUSG00000025142.19	ENSMUST00000151531.2	520	3	0	0	0	0	multi-exon	FALSE	canonical	3	1054	junction_1	20.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTTTCTTTTCTGCAG	899	False	NA	16	True	AATAAA	-20	NA	120599585	120600273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120599826_120599896_120600073_120600169
transcript_11204.known	chr11	-	873	6	FSM	ENSMUSG00000025144.18	ENSMUST00000106154.8	873	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	397.451380674417	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604558	120601767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120603265_120603539_120604518
transcript_11208.known	chr11	-	606	5	FSM	ENSMUSG00000025144.18	ENSMUST00000055424.13	606	5	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_4	137.848422189012	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604564	120601767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120604518
transcript_11213.nnic	chr11	-	592	4	NIC	ENSMUSG00000025144.18	novel	606	5	NA	NA	-38	0	combination_of_known_splicesites	FALSE	canonical	3	126	junction_3	359.512942125253	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604602	120601767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_120602133_120602215_120602305_120602528_120602583_120604518
transcript_11214.known	chr11	-	692	4	FSM	ENSMUSG00000025144.18	ENSMUST00000026137.8	692	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	156.895577446346	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCCTGCTTTCTCTTTGCC	NA	False	NA	-3	True	AATAAA	-18	NA	120604564	120601768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120602133_120602215_120602305_120602528_120602722_120604518
transcript_11221.known	chr11	-	700	6	FSM	ENSMUSG00000025144.18	ENSMUST00000106155.4	700	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	401.222631465375	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGCTTTCTCTTTGCCA	NA	False	NA	-2	True	AATAAA	-19	NA	120604558	120601767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120602133_120602215_120602305_120602528_120602583_120602669_120602722_120603265_120603366_120604518
transcript_11223.known	chr11	+	2492	18	FSM	ENSMUSG00000025145.14	ENSMUST00000026139.14	2492	18	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_12	7.88805763716247	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCGTCCAGTTCCTTTCT	6064	False	NA	NA	False	GATAAA	-1	NA	120604750	120611954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120604880_120605098_120605355_120605743_120605806_120605975_120606047_120606246_120606426_120606631_120606761_120607881_120607995_120608305_120608365_120608650_120608729_120608862_120608999_120609069_120609148_120609267_120609380_120609475_120609547_120609865_120609959_120610291_120610385_120610759_120610934_120611011_120611160_120611443
transcript_11227.known	chr11	+	717	5	FSM	ENSMUSG00000018012.12	ENSMUST00000134322.2	717	5	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	3.80788655293195	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCTCCAGTGAAAAAGCCA	4342	False	NA	NA	False	NA	NA	NA	120612839	120614391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120613129_120613334_120613453_120613631_120613695_120614006_120614167_120614304
transcript_11228.known	chr11	-	892	8	FSM	ENSMUSG00000039450.12	ENSMUST00000026144.5	892	8	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	11.7438650940369	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGATCTGTGCTATCTG	9984	False	NA	-4	True	AATAAA	-37	NA	120618107	120616224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120616434_120616563_120616682_120616767_120616833_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
transcript_11229.known	chr11	-	910	7	FSM	ENSMUSG00000039450.12	ENSMUST00000125242.8	910	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	12.2202018532156	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCCTGTGTGCTGATTCTC	6915	False	NA	-30	True	AATAAA	-11	NA	120618070	120616250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120616434_120616563_120616682_120616767_120616833_120616913_120617138_120617236_120617392_120617824_120617923_120618003
transcript_11231.known	chr11	-	830	7	FSM	ENSMUSG00000039450.12	ENSMUST00000106148.10	830	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	29.9035486560077	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACAGATCTGTGCTATCTG	6916	False	NA	-4	True	AATAAA	-37	NA	120618069	120616224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120616434_120616563_120616723_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
transcript_11233.known	chr11	-	914	7	FSM	ENSMUSG00000039450.12	ENSMUST00000122883.2	914	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	12.5786415094088	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTCCGCCCCTGCAATAAA	6930	False	NA	-60	True	NA	NA	NA	120618055	120616280	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120616682_120616767_120616833_120616913_120617014_120617094_120617138_120617236_120617392_120617824_120617923_120618003
transcript_11236.nnic	chr11	+	1199	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	-2	261	multi-exon	FALSE	canonical	3	1960	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTTGTGTTGTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	120653617	120654849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr11_+_120653817_120653849
transcript_11237.nnic	chr11	+	1272	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	-2	-323	multi-exon	FALSE	canonical	3	1960	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCATCCTCCTGAATTTG	NA	False	NA	NA	False	NA	NA	NA	120653617	120654922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr11_+_120653817_120653849
transcript_11239.nnic	chr11	+	1595	2	Genic_Genomic	ENSMUSG00000078249.6	novel	1626	1	NA	NA	-2	0	multi-exon	FALSE	canonical	3	1960	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTACAAGAGTCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	120653617	120655245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr11_+_120653817_120653849
transcript_11240.known	chr11	+	1626	1	FSM	ENSMUSG00000078249.6	ENSMUST00000105046.4	1626	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2394	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTACAAGAGTCCTGCCT	NA	False	NA	NA	False	NA	NA	NA	120653619	120655245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120653600_120655200
transcript_11241.known	chr11	-	2118	8	FSM	ENSMUSG00000025158.8	ENSMUST00000026156.8	2118	8	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	23.1137382947714	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGTGGCTCCTCTTGTC	NA	False	NA	-6	True	AGTAAA	-17	NA	120675033	120671573	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120672730_120672804_120672891_120673208_120673375_120673454_120673544_120673832_120673987_120674093_120674197_120674560_120674610_120674718
transcript_11243.known	chr11	+	1827	14	FSM	ENSMUSG00000025156.18	ENSMUST00000116305.8	1827	14	0	0	0	0	multi-exon	FALSE	canonical	3	682	junction_1	155.049677093711	384	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGGCTCCTTTCCTTTC	1424	False	NA	2	True	ATTAAA	-19	NA	120675130	120679928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
transcript_11248.known	chr11	+	2000	14	FSM	ENSMUSG00000025156.18	ENSMUST00000172809.2	2000	14	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	255.452956564905	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGGCTCCTTTCCTTTC	1634	False	NA	2	True	ATTAAA	-19	NA	120675340	120679928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120675552_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287_120679423_120679495
transcript_11249.known	chr11	+	1925	13	FSM	ENSMUSG00000025156.18	ENSMUST00000100134.10	1925	13	0	0	0	0	multi-exon	TRUE	canonical	3	682	junction_1	150.079122650539	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGCCCCAAGGCTCCTTTC	1394	False	NA	-3	True	ATTAAA	-14	NA	120675100	120679923	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120675169_120675946_120676040_120676525_120676708_120677127_120677293_120677377_120677514_120677597_120677676_120677834_120677896_120678205_120678292_120678522_120678618_120678701_120678808_120678887_120678969_120679069_120679208_120679287
transcript_11265.nic	chr11	-	2134	14	NIC	ENSMUSG00000025155.16	novel	1909	14	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	1	287	junction_5	197.871304777721	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCAGAGATCTCTAGTGA	NA	False	NA	-16	True	AATAAA	-17	NA	120687241	120680026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686764
transcript_11266.known	chr11	-	1909	14	FSM	ENSMUSG00000025155.16	ENSMUST00000167023.8	1909	14	0	0	0	0	multi-exon	FALSE	canonical	1	70	junction_13	260.320262471546	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGCAGAGATCTCTAGTG	NA	False	NA	-17	True	AATAAA	-16	NA	120687221	120680027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120686968
transcript_11267.nic	chr11	-	1885	14	NIC	ENSMUSG00000025155.16	novel	1863	14	NA	NA	-43	0	combination_of_known_junctions	FALSE	canonical	1	287	junction_5	178.060258399514	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGCAGAGATCTCTAGTGA	NA	False	NA	-16	True	AATAAA	-17	NA	120687272	120680026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_120680386_120680482_120680559_120680668_120680707_120682030_120682177_120682680_120682770_120682856_120682954_120683180_120683326_120683516_120683621_120683853_120683937_120684659_120684773_120685093_120685145_120685728_120685838_120686302_120686550_120687044
transcript_1127.known	chr1	+	1939	6	FSM	ENSMUSG00000025967.17	ENSMUST00000129339.8	1939	6	0	0	0	0	multi-exon	FALSE	canonical	3	2982	junction_1	199.182730175083	3284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCACAGCAGTTTCAGCTT	NA	False	NA	NA	False	NA	NA	NA	63215983	63219645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_63216451_63216912_63217036_63217597_63217725_63217990_63218058_63218406_63218533_63218616
transcript_11278.known	chr11	-	3403	19	FSM	ENSMUSG00000048445.7	ENSMUST00000056781.5	3403	19	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	6.51399253648882	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTGTCTTGTCCTACT	1471	False	NA	2	True	ATTAAA	-28	NA	120823698	120717354	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120717751_120751226_120751453_120751963_120752096_120757380_120757503_120764411_120764626_120769703_120769875_120772640_120772742_120776058_120776212_120776675_120776890_120785424_120785560_120786082_120786246_120788634_120788794_120792700_120792902_120794141_120794217_120794348_120794507_120794809_120794912_120810298_120810408_120812345_120812761_120823541
transcript_11279.nic	chr11	-	1426	7	ISM	ENSMUSG00000048445.7	ENSMUST00000056781.5	3403	19	-18	75155	-18	-27892	5prime_fragment	FALSE	canonical	3	22	junction_2	1.37436854187255	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTACTTGTGATAAGTGT	1453	False	NA	NA	False	NA	NA	NA	120823716	120792509	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_120792902_120794141_120794217_120794348_120794507_120794809_120794912_120810298_120810408_120812345_120812761_120823541
transcript_11282.nnic	chr11	-	589	2	NNC	ENSMUSG00000048445.7	novel	3403	19	NA	NA	20924	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTGTCTTGTCCTACT	4428	False	NA	2	True	ATTAAA	-28	NA	120743573	120717354	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_120717751_120743380
transcript_11284.known	chr11	-	3500	10	FSM	ENSMUSG00000025162.19	ENSMUST00000070575.14	3500	10	0	0	0	0	multi-exon	TRUE	canonical	3	176	junction_1	174.428237039028	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCCTCCCCTTTGTGTGG	1014	False	NA	-11	True	AATAAA	-22	NA	120881918	120852574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120854733_120855773_120855837_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
transcript_11286.known	chr11	-	3675	9	FSM	ENSMUSG00000025162.19	ENSMUST00000018274.10	3675	9	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_1	79.8474130764423	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCCTCCCCTTTGTGTGG	776	False	NA	-11	True	AATAAA	-22	NA	120882156	120852574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120854733_120858820_120858961_120859848_120860021_120862392_120862542_120863202_120863374_120863791_120864021_120864646_120864796_120874058_120874170_120881760
transcript_11289.known	chr11	+	4335	6	FSM	ENSMUSG00000025161.17	ENSMUST00000168579.8	4335	6	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_1	37.4197808652055	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCATGATGTAAATATTTT	NA	False	NA	NA	False	NA	NA	NA	120839906	120851694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120839977_120844999_120845095_120846051_120846296_120846624_120846769_120847180_120847949_120848680
transcript_11290.known	chr11	+	2386	5	FSM	ENSMUSG00000025161.17	ENSMUST00000100130.10	2386	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	128.437484793186	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGCTTCCAACCTAAGT	NA	False	NA	NA	False	NA	NA	NA	120839892	120849826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120839977_120846051_120846296_120846624_120846769_120847180_120847949_120848680
transcript_11292.known	chr11	+	2272	6	FSM	ENSMUSG00000025161.17	ENSMUST00000070653.13	2272	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	136.383870014016	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTTCTGGCCCTCATTAG	NA	False	NA	22	True	NA	NA	NA	120839305	120849601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_120839406_120844999_120845095_120846051_120846296_120846624_120846769_120847180_120847949_120848680
transcript_11293.known	chr11	-	982	4	FSM	ENSMUSG00000025163.7	ENSMUST00000026159.6	982	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	2.49443825784929	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTTGTTTTTGTTGCTTT	7896	False	NA	NA	False	AATAAA	-22	NA	120930244	120927572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_120927977_120928505_120928643_120928861_120929177_120930118
transcript_11295.known	chr11	-	2046	3	FSM	ENSMUSG00000039337.4	ENSMUST00000039146.4	2046	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	13.5	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTTGCAGTCTCCTCAT	NA	False	NA	0	True	AATAAA	-19	NA	121009503	121007040	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_121008523_121008652_121008727_121009013
transcript_11296.known	chr11	+	1745	3	FSM	ENSMUSG00000039329.9	ENSMUST00000039088.9	1745	3	0	0	0	0	multi-exon	FALSE	canonical	3	732	junction_1	1	1461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTATGTGTATGGTTT	NA	False	NA	26	True	AATAAA	-20	NA	121036968	121039145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_121037049_121037353_121037428_121037554
transcript_11298.known	chr11	+	406	2	FSM	ENSMUSG00000039329.9	ENSMUST00000155694.2	406	2	0	0	0	0	multi-exon	FALSE	canonical	3	732	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGAGGCATGGCTGTACC	NA	False	NA	NA	False	NA	NA	NA	121036982	121037693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_121037049_121037353
transcript_11300.known	chr11	+	2149	13	FSM	ENSMUSG00000039307.17	ENSMUST00000106117.8	2149	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	4.64503916979059	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCCACCAGCAGAAACTCT	NA	False	NA	4	True	AATAAA	-20	NA	121095260	121113473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_121095669_121098464_121098602_121102867_121102978_121104808_121104897_121105585_121105751_121107718_121107903_121108913_121108986_121109368_121109565_121110666_121110750_121111908_121111988_121112061_121112164_121112326_121112417_121113038
transcript_11303.known	chr11	-	1308	9	FSM	ENSMUSG00000025169.7	ENSMUST00000026169.7	1308	9	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_7	19.9483708607996	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGATCTGGGCGCTGC	NA	False	NA	-7	True	AGTAAA	-41	NA	121095537	121068416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_121068765_121074236_121074361_121085905_121086060_121087562_121087620_121088256_121088322_121090591_121090635_121091736_121091813_121093716_121093935_121095314
transcript_11307.known	chr11	-	2417	7	FSM	ENSMUSG00000039294.15	ENSMUST00000038709.14	2417	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	26.4790273403101	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTTTCTGTTTTCTGC	NA	False	NA	0	True	AATAAA	-22	NA	121120135	121113413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121119864
transcript_11309.known	chr11	-	2239	7	FSM	ENSMUSG00000039294.15	ENSMUST00000106115.8	2239	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_6	22.8284666346404	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCCTTTCTGTTTTCTGC	NA	False	NA	0	True	AATAAA	-22	NA	121120131	121113413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_121115059_121115374_121115520_121116629_121116727_121117594_121117669_121118068_121118111_121119153_121119297_121120038
transcript_11310.nnic	chr11	-	609	3	NNC	ENSMUSG00000025169.7	novel	1308	9	NA	NA	-18	-24282	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	107.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGTCCTGGGAGTCTA	NA	False	NA	NA	False	AATAAA	-21	NA	121095555	121092698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_121092849_121093716_121093935_121095314
transcript_11311.known	chr11	+	4395	11	FSM	ENSMUSG00000000056.8	ENSMUST00000103015.4	4395	11	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	11.0295058819514	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGTGTATGTGTGTCTA	NA	False	NA	NA	False	NA	NA	NA	121128078	121146682	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_121128178_121129244_121129344_121133326_121133471_121135419_121135553_121135761_121135897_121136163_121136283_121137751_121137882_121139954_121140019_121141118_121141257_121141585_121141744_121143506
transcript_11314.nnic	chr11	-	2275	10	NNC	ENSMUSG00000025173.14	novel	2321	10	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_4	138.714023252567	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAGAGCCATATGTAATG	NA	False	NA	1	True	AATAAA	-33	NA	121245259	121218049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221025_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
transcript_11315.known	chr11	-	2321	10	FSM	ENSMUSG00000025173.14	ENSMUST00000026173.13	2321	10	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_4	31.7350139610984	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCAGAGCCATATGTAATG	NA	False	NA	1	True	AATAAA	-33	NA	121245271	121218049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_121219291_121219618_121219741_121220151_121220254_121220972_121221059_121226209_121226401_121227801_121227897_121229382_121229471_121231939_121232042_121240057_121240133_121245052
transcript_11319.known	chr11	+	2520	6	FSM	ENSMUSG00000039253.8	ENSMUST00000038096.8	2520	6	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_4	7.30479294709987	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTAAGACTGGTATATTT	3857	False	NA	NA	False	AATAAA	-20	NA	121312226	121322114	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_121312430_121315751_121315904_121316380_121316473_121317446_121317530_121319870_121319994_121320247
transcript_11320.known	chr11	+	3906	39	FSM	ENSMUSG00000039230.15	ENSMUST00000103013.10	3906	39	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_21	67.5521189983218	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGCCTCTGCCTATCTC	NA	False	NA	33	True	ATTAAA	-15	NA	121342774	121507990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_121343055_121344456_121344508_121350226_121350325_121351234_121351337_121352079_121352227_121352577_121352634_121366364_121366498_121383383_121383430_121384584_121384718_121387820_121387964_121389861_121389923_121390861_121390937_121394518_121394614_121431677_121431835_121441049_121441108_121447781_121447812_121451500_121451587_121464621_121464703_121466111_121466186_121466951_121467070_121469540_121469602_121470973_121470997_121473578_121473611_121481169_121481233_121482004_121482082_121483456_121483539_121485085_121485205_121487274_121487367_121488077_121488219_121492782_121492867_121493813_121493973_121494059_121494199_121494440_121494563_121496088_121496167_121499397_121499488_121500165_121500254_121500806_121500917_121502489_121502575_121507753
transcript_11322.known	chr11	+	1324	11	FSM	ENSMUSG00000039230.15	ENSMUST00000151666.2	1324	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	89.5904012715648	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAGCCTCTGCCTATCT	4547	False	NA	32	True	ATTAAA	-14	NA	121492530	121507989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_121492664_121492782_121492867_121493813_121493973_121494059_121494199_121494440_121494563_121496088_121496167_121499397_121499488_121500165_121500254_121500806_121500917_121502489_121502575_121507753
transcript_11323.known	chr11	-	3232	3	FSM	ENSMUSG00000039238.7	ENSMUST00000092298.6	3232	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTATTCTCTAGAGTCT	NA	False	NA	NA	False	CATAAA	-21	NA	121410159	121401803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_121403326_121403452_121405059_121410055
transcript_11324.known	chr11	-	2864	13	FSM	ENSMUSG00000046605.15	ENSMUST00000067399.14	2864	13	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_9	15.1867998238236	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGACTATAACATTCATA	NA	False	NA	2	True	AATAAA	-26	NA	121563979	121507022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_121508679_121510460_121510555_121514257_121514333_121514747_121514817_121514917_121515054_121520698_121520824_121521597_121521694_121530577_121530674_121535352_121535419_121542434_121542500_121561695_121561796_121561882_121562000_121563810
transcript_11331.nnic	chr11	-	2237	12	NIC	ENSMUSG00000046605.15	novel	2864	13	NA	NA	-8	-570	combination_of_known_splicesites	FALSE	canonical	2	12	junction_9	22.2443232613485	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTCTAACAATGTAAAGG	NA	False	NA	-7	True	AATAAA	-20	NA	121563987	121507592	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_121508679_121510460_121510555_121514257_121514333_121514747_121514817_121514917_121515054_121520698_121520824_121521597_121521694_121530577_121530674_121535352_121535419_121561695_121561796_121561882_121562000_121563810
transcript_11334.nnic	chr11	-	997	4	NNC	ENSMUSG00000046605.15	novel	2864	13	NA	NA	-8	-27019	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	36.4173340899938	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTGTCTCCACTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	121563987	121545112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_121545716_121561695_121561796_121561882_121562000_121563810
transcript_11335.nic	chr12	+	1549	8	NIC	ENSMUSG00000079179.10	novel	823	8	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_7	75.6511866451302	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAAGCCTGTTAGGCCAT	NA	False	NA	NA	False	AATAAA	-21	NA	3285493	3300377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028_3288113_3288833_3289010_3291521_3291579_3297351_3297439_3299866
transcript_11342.known	chr12	-	3513	6	FSM	ENSMUSG00000020671.10	ENSMUST00000021001.10	3513	6	0	0	0	0	multi-exon	FALSE	canonical	3	1286	junction_2	62.4422933595492	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTTTGGTTTTCAT	NA	False	NA	-2	True	TATAAA	-19	NA	3359969	3297427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_3299871_3302611_3302714_3303268_3303359_3306866_3307006_3314688_3314750_3359291
transcript_11347.nnic	chr12	+	978	5	NNC	ENSMUSG00000079179.10	novel	4006	4	NA	NA	-10	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	88.663337970099	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGTTCTCTCAGGACAA	NA	False	NA	6	True	AATAAA	-15	NA	3285493	3288269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_3285930_3286598_3286702_3287284_3287413_3287590_3287661_3288028
transcript_11349.known	chr12	+	4006	4	FSM	ENSMUSG00000079179.10	ENSMUST00000178074.8	4006	4	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_1	34.8934887272046	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGAAAGCTCTTACTTGAT	NA	False	NA	NA	False	AATAAA	-20	NA	3285503	3291410	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288028
transcript_1135.known	chr1	+	681	5	FSM	ENSMUSG00000025967.17	ENSMUST00000188524.2	681	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	1438.5358876302	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGGCTCTTCATTTTGC	NA	False	NA	30	True	AATAAA	-15	NA	63216288	63218815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_63216451_63217597_63217725_63217990_63218058_63218406_63218533_63218616
transcript_11351.known	chr12	+	812	4	FSM	ENSMUSG00000079179.10	ENSMUST00000178331.8	812	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	69.5621225156974	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCTCTCAGGACAAATTT	NA	False	NA	10	True	AATAAA	-19	NA	3285525	3288273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_3285930_3287284_3287413_3287590_3287661_3288063
transcript_11353.nnic	chr12	+	799	4	NNC	ENSMUSG00000079179.10	novel	4006	4	NA	NA	4	-4	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	68.3569065030496	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGTTCTCTCAGGACAA	NA	False	NA	6	True	AATAAA	-15	NA	3285507	3288269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_3285930_3287346_3287413_3287590_3287661_3288028
transcript_11354.nnic	chr12	+	824	4	NNC	ENSMUSG00000079179.10	novel	812	4	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_3	79.4411032708439	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCTCTCAGGACAAATTT	NA	False	NA	10	True	AATAAA	-19	NA	3285451	3288273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_3285930_3287346_3287413_3287590_3287661_3288063
transcript_11357.known	chr12	+	1483	12	FSM	ENSMUSG00000037486.19	ENSMUST00000144247.9	1483	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	30.173328488354	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAACCCCAGCTGAGC	NA	False	NA	NA	False	NA	NA	NA	3476883	3546284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_3477213_3492473_3492557_3495451_3495455_3501661_3501771_3507061_3507210_3519477_3519594_3524489_3524614_3526025_3526170_3534444_3534609_3539636_3539734_3543733_3543840_3546224
transcript_11359.known	chr12	+	11934	11	FSM	ENSMUSG00000037486.19	ENSMUST00000092003.12	11934	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	34.3396272548203	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTAGTTTTTGATGAAT	NA	False	NA	NA	False	NA	NA	NA	3476856	3556852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_3477213_3492473_3492557_3495451_3495455_3501661_3501771_3507061_3507210_3519477_3519594_3524489_3524614_3534444_3534609_3539636_3539734_3543733_3543840_3546224
transcript_11361.known	chr12	+	6791	8	FSM	ENSMUSG00000020668.11	ENSMUST00000020999.7	6791	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	14.4066311262614	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGCTTGCCTGCTTCTCTC	NA	False	NA	NA	False	AATAAA	-21	NA	3415189	3456494	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_3417532_3437551_3437654_3438134_3438258_3439622_3439742_3440437_3440555_3451682_3451792_3452433_3452607_3452788
transcript_11363.nic	chr12	+	1950	6	ISM	ENSMUSG00000020668.11	ENSMUST00000219895.2	2962	8	721	869	721	0	3prime_fragment	FALSE	canonical	3	43	junction_1	11.2071405808975	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTCATTGACCTTTATT	NA	False	NA	4	True	AGTAAA	-19	NA	3438101	3454064	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_3438258_3439622_3439742_3440437_3440555_3451682_3451792_3452433_3452607_3452788
transcript_11367.known	chr12	-	1923	3	FSM	ENSMUSG00000071456.7	ENSMUST00000095903.7	1923	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	5.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTGAATTGTTAAGTGCT	NA	False	NA	NA	False	AATAAA	-11	NA	3476740	3455309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_3456712_3457643_3457925_3476500
transcript_11370.known	chr12	-	3569	3	FSM	ENSMUSG00000071456.7	ENSMUST00000168012.3	3569	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	29.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGGCCTGGGTTTGTTTCT	NA	False	NA	NA	False	AGTAAA	-19	NA	3477011	3453877	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_3456712_3457700_3457925_3476500
transcript_11371.known	chr12	+	2390	20	FSM	ENSMUSG00000071454.14	ENSMUST00000164607.9	2390	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	90.3998198218487	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGTGTGTTCCTTCCG	NA	False	NA	27	True	AAAAAG	-7	NA	3622432	3831398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3822586_3822747_3823550_3823641_3824569_3824611_3829618_3829655_3831105
transcript_11372.nic	chr12	+	2289	19	NIC	ENSMUSG00000071454.14	novel	2820	20	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	85.0941562746747	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGAGCCTGTGTGTGTT	NA	False	NA	20	True	NA	NA	NA	3622485	3831391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_3622648_3639170_3639239_3641905_3641987_3646648_3646863_3667605_3667692_3682809_3682965_3693916_3694023_3698222_3698390_3736737_3736863_3768411_3768490_3782617_3782708_3784938_3785027_3798424_3798511_3799469_3799584_3801810_3801908_3822586_3822747_3823550_3823641_3829618_3829655_3831105
transcript_11373.known	chr12	+	2328	18	FSM	ENSMUSG00000020661.16	ENSMUST00000172689.8	2328	18	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	19.4274446476198	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACGGAGAAAAGTTCAGCA	NA	False	NA	NA	False	NA	NA	NA	3941727	3957842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_3941861_3945542_3945759_3945989_3946149_3946577_3946686_3946885_3947043_3947297_3947448_3947564_3947610_3949192_3949273_3949586_3949700_3949863_3950048_3950276_3950362_3951548_3951695_3952380_3952472_3952665_3952815_3954139_3954226_3955592_3955663_3956764_3956884_3957605
transcript_11377.nnic	chr12	-	2244	7	NNC	ENSMUSG00000020652.18	novel	2037	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	27.9026084005699	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACCTGCAGATTCTTTGT	NA	False	NA	-9	True	AATAAA	-19	NA	4283965	4263481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281445_4281683_4283530_4283658_4283781
transcript_11378.known	chr12	-	4348	7	FSM	ENSMUSG00000020652.18	ENSMUST00000140975.8	4348	7	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_6	17.0953209972788	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCCTTTGCTTTTTAAGC	NA	False	NA	NA	False	ACTAAA	-23	NA	4284294	4261666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283751
transcript_11379.nnic	chr12	-	2477	7	NNC	ENSMUSG00000020652.18	novel	4348	7	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_6	14.9666295470958	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACCTGCAGATTCTTTGT	NA	False	NA	-9	True	AATAAA	-19	NA	4284268	4263481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_4264631_4265258_4265431_4266518_4266779_4267207_4267323_4281515_4281683_4283530_4283658_4283781
transcript_11380.known	chr12	+	3840	2	FSM	ENSMUSG00000096199.3	ENSMUST00000179139.3	3840	2	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	0	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCATTACCTAAAATAGAT	NA	False	NA	NA	False	AATAAA	-28	NA	4284026	4289950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_4284279_4286362
transcript_11382.known	chr12	-	457	3	FSM	ENSMUSG00000112819.2	ENSMUST00000217932.2	457	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	2.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAACTGTCTTGGCTACA	NA	False	NA	NA	False	NA	NA	NA	4603785	4602545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_4602746_4603013_4603176_4603690
transcript_11383.known	chr12	+	6080	40	FSM	ENSMUSG00000020640.11	ENSMUST00000220311.2	6080	40	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_16	21.379818683581	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGACTCTCTATGTGGAA	7386	False	NA	NA	False	AATAAA	-32	NA	4643007	4763962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_4643233_4663242_4663306_4674890_4674984_4676529_4676594_4677832_4677997_4679544_4679752_4679867_4679965_4680636_4680777_4682373_4682438_4682935_4683074_4683476_4683563_4684534_4684798_4685580_4685731_4686546_4686688_4687738_4687827_4689654_4689795_4690912_4690994_4699982_4700120_4702350_4702488_4703445_4703544_4708014_4708191_4708441_4708572_4711858_4712065_4714536_4714623_4716159_4716327_4721272_4721319_4721401_4721524_4722736_4722834_4723415_4723608_4747141_4747264_4750319_4750427_4751181_4751366_4756259_4756359_4756964_4757133_4757529_4757746_4758112_4758235_4758944_4759028_4761952_4762037_4762466_4762641_4763039
transcript_11385.nnic	chr12	-	1521	11	NNC	ENSMUSG00000050545.11	novel	2851	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	8.77724330299668	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGTTCAGTGTCTGTGAT	NA	False	NA	-4	True	AATAAA	-10	NA	4819235	4789891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_4790044_4791061_4791208_4795651_4795757_4797154_4797224_4798020_4798178_4798263_4798352_4812326_4812408_4812999_4813192_4814078_4814148_4818389_4818522_4818905
transcript_11391.known	chr12	-	2851	7	FSM	ENSMUSG00000050545.11	ENSMUST00000053458.7	2851	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	2.69258240356725	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAATAAAATAAAAACAT	NA	False	NA	NA	False	NA	NA	NA	4819232	4796215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_4798178_4798263_4798352_4812326_4812408_4812999_4813192_4814078_4814148_4818389_4818522_4818905
transcript_11394.known	chr12	+	1180	4	FSM	ENSMUSG00000037361.9	ENSMUST00000046207.9	1180	4	0	0	0	0	multi-exon	FALSE	canonical	3	1039	junction_3	63.8609600790829	898	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTTTCTCTTGTAA	NA	False	NA	NA	False	NA	NA	NA	4867543	4877659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_4867820_4870593_4870713_4876757_4876897_4877013
transcript_11396.known	chr12	-	976	4	FSM	ENSMUSG00000020635.9	ENSMUST00000020964.7	976	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	6.34209919681348	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGTTGTGGGAGGTTCTT	NA	False	NA	0	True	AATAAA	-29	NA	4891591	4883173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_4883796_4884738_4884852_4888168_4888217_4891398
transcript_11397.known	chr12	-	246	4	FSM	ENSMUSG00000020635.9	ENSMUST00000219880.2	246	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	23.2999761564017	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTGGGGCAGAGGGCGAA	NA	False	NA	NA	False	NA	NA	NA	4891435	4883792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_4883841_4884738_4884852_4888168_4888217_4891398
transcript_11398.known	chr12	+	605	2	FSM	ENSMUSG00000051721.7	ENSMUST00000219069.2	605	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACATGGTGGTGTGTGCC	NA	False	NA	NA	False	AATAAA	-15	NA	4893327	4899343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_4893452_4898862
transcript_11399.known	chr12	+	2892	2	FSM	ENSMUSG00000051721.7	ENSMUST00000053034.6	2892	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAACTATTAG	NA	False	NA	NA	False	NA	NA	NA	4893346	4902913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_4893452_4900126
transcript_1140.known	chr1	-	1775	12	FSM	ENSMUSG00000025968.17	ENSMUST00000185827.7	1775	12	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_11	239.973035675343	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCTTACAGAAGAATGTA	NA	False	NA	NA	False	AATAAA	-15	NA	63215828	63195841	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_63196437_63198908_63199024_63200038_63200174_63202825_63203012_63203888_63204020_63204107_63204190_63205449_63205527_63208387_63208496_63209208_63209301_63210007_63210074_63211312_63211417_63215744
transcript_11403.known	chr12	-	2696	7	FSM	ENSMUSG00000020634.13	ENSMUST00000020962.12	2696	7	0	0	0	0	multi-exon	FALSE	canonical	3	1036	junction_3	130.609362434534	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGGTGTGGTTGTACATG	NA	False	NA	-6	True	GATAAA	-13	NA	4957705	4929031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_4930772_4933822_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957348
transcript_11408.known	chr12	-	965	6	FSM	ENSMUSG00000020634.13	ENSMUST00000141360.2	965	6	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	515.309770914544	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAGAAAAAAATACCTATTT	NA	False	NA	-80	True	NA	NA	NA	4957439	4930389	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_4930772_4933822_4933982_4935720_4935859_4944537_4944680_4952219_4952273_4957348
transcript_1141.known	chr1	+	802	6	FSM	ENSMUSG00000025967.17	ENSMUST00000027108.13	802	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	1594.84562262308	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTCAGTGCACTTAAATAAA	NA	False	NA	-4	True	TTTAAA	-10	NA	63216303	63218781	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_63216451_63216881_63217036_63217581_63217725_63217990_63218058_63218406_63218533_63218616
transcript_11411.nic	chr12	-	1061	6	ISM	ENSMUSG00000020634.13	ENSMUST00000020962.12	2696	7	185	4501	-81	-3143	5prime_fragment	FALSE	canonical	3	1036	junction_2	139.123542220575	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTGTCAATGCAACATAAC	NA	False	NA	NA	False	AATAAA	-17	NA	4957520	4933532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_4933982_4935720_4935859_4941314_4941422_4944537_4944680_4952219_4952273_4957348
transcript_11412.known	chr12	+	2737	7	FSM	ENSMUSG00000037669.16	ENSMUST00000037383.13	2737	7	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_1	76.8839312788367	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTGTGGTCTGATC	NA	False	NA	18	True	AATAAA	-18	NA	8258106	8335759	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_8258193_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8333899
transcript_11414.nic	chr12	+	1260	7	NIC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	11	202	combination_of_known_junctions	FALSE	canonical	3	188	junction_5	23.7533623350932	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTACTGGCCCAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	8258117	8334281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_8258205_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8333899
transcript_11415.nic	chr12	+	2738	7	NIC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	188	junction_5	23.7533623350932	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTGTGGTCTGATC	NA	False	NA	18	True	AATAAA	-18	NA	8258117	8335759	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_8258205_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807_8325891_8333899
transcript_11416.known	chr12	+	1159	6	FSM	ENSMUSG00000037669.16	ENSMUST00000218086.2	1159	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	78.8958807543208	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAGAACTAACATTGTG	NA	False	NA	NA	False	AATAAA	-34	NA	8258144	8326210	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_8258193_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807
transcript_11417.nic	chr12	+	1211	6	NIC	ENSMUSG00000037669.16	novel	1159	6	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	188	junction_5	22.8700677742765	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTGCGACCTGCTGA	NA	False	NA	NA	False	ATTAAA	-19	NA	8258117	8326223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_8258205_8270599_8270756_8277219_8277364_8288442_8288616_8318363_8318599_8325807
transcript_11419.nic	chr12	+	2594	6	NIC	ENSMUSG00000037669.16	novel	2737	7	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	91.7243697171041	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTGTGGTCTGATC	NA	False	NA	18	True	AATAAA	-18	NA	8258117	8335759	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_8258205_8270599_8270756_8288442_8288616_8318363_8318599_8325807_8325891_8333899
transcript_11421.known	chr12	+	1587	5	FSM	ENSMUSG00000037669.16	ENSMUST00000218305.2	1587	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	100.260909630823	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTGCCTAAACTTTATTG	NA	False	NA	NA	False	AGTAAA	-17	NA	8258135	8334943	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_8258205_8270599_8270756_8318363_8318599_8325807_8325891_8333899
transcript_11422.known	chr12	+	2959	7	FSM	ENSMUSG00000020605.10	ENSMUST00000020927.10	2959	7	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	12.8765506078125	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCAGTGTTGTTCTTTTCC	NA	False	NA	NA	False	AGTAAA	-24	NA	8363431	8393824	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_8363498_8367784_8367951_8371518_8371727_8373869_8374102_8386237_8386396_8387632_8387769_8391831
transcript_11428.known	chr12	+	3157	5	FSM	ENSMUSG00000020592.15	ENSMUST00000020911.14	3157	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_4	19.0574788468989	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGGTGTACTTGTGCAG	NA	False	NA	NA	False	AATAAA	-28	NA	8821322	8843715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_8821702_8839406_8839489_8840384_8840867_8841290_8841427_8841637
transcript_11431.known	chr12	+	1773	7	FSM	ENSMUSG00000020585.5	ENSMUST00000020909.4	1773	7	0	0	0	0	multi-exon	FALSE	canonical	3	924	junction_4	59.5158708991886	1126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCTCATGTTTATGCTA	NA	False	NA	38	True	AATAAA	-29	NA	8971663	8988742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_8972295_8981627_8981749_8984695_8984773_8984865_8984989_8985986_8986083_8986696_8986796_8988116
transcript_11434.known	chr12	+	3014	8	FSM	ENSMUSG00000020583.5	ENSMUST00000020899.5	3014	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	6.68534797531291	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCTTTTAAAAACTTTATT	NA	False	NA	NA	False	NA	NA	NA	8997928	9022028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_8998252_9001997_9002565_9005366_9005493_9008789_9008916_9011117_9011244_9013472_9013599_9017628_9017740_9020519
transcript_11436.known	chr12	+	4312	27	FSM	ENSMUSG00000066643.13	ENSMUST00000111113.3	4312	27	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	11.1856972283898	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGAGTAATGCTGTAGT	NA	False	NA	7	True	AATAAA	-14	NA	9024046	9078846	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_9024180_9024933_9025052_9027362_9027435_9028597_9028691_9031031_9031161_9032760_9032895_9035628_9035795_9035966_9036113_9037277_9037404_9039904_9040091_9046068_9046130_9053996_9054142_9055762_9055833_9056719_9056774_9058001_9058112_9058478_9058690_9062660_9062742_9065969_9066107_9066436_9066641_9068085_9068233_9069877_9070011_9071729_9071841_9072718_9072884_9074193_9074335_9074885_9075043_9077482_9077724_9078005
transcript_11438.known	chr12	+	1000	3	FSM	ENSMUSG00000066637.3	ENSMUST00000085741.2	1000	3	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_2	13	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAATAAAACAAAAGA	NA	False	NA	NA	False	NA	NA	NA	9079996	9086394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_9080197_9084921_9085089_9085761
transcript_11439.known	chr12	+	1480	2	FSM	ENSMUSG00000020621.7	ENSMUST00000020947.7	1480	2	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	0	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGTGCATTTCTTTAA	NA	False	NA	11	True	AATAAA	-17	NA	10440771	10445562	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_10441227_10444537
transcript_11440.nnic	chr12	-	2394	3	NNC	ENSMUSG00000043673.12	novel	2332	3	NA	NA	672	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	27	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGCCTTGTTTCTATGT	4679	False	NA	-2	True	AATAAA	-18	NA	11199702	11140740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_11142757_11169759_11169950_11199514
transcript_11441.known	chr12	-	2332	3	FSM	ENSMUSG00000043673.12	ENSMUST00000164495.9	2332	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	28	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGCCTTGTTTCTATGT	3538	False	NA	-2	True	AATAAA	-18	NA	11200843	11140740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_11142757_11169759_11169950_11200717
transcript_11442.known	chr12	-	5268	14	FSM	ENSMUSG00000051235.11	ENSMUST00000166117.4	5268	14	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	6.04323672043149	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTAATCCTTACCTCA	NA	False	NA	4	True	NA	NA	NA	11315767	11288920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_11292578_11293190_11293335_11296289_11296352_11298215_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407_11312595_11315587
transcript_11444.nic	chr12	-	1702	12	ISM	ENSMUSG00000051235.11	ENSMUST00000166117.4	5268	14	-53	7187	-18	1634	5prime_fragment	FALSE	canonical	3	39	junction_9	5.8124972229621	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTTTTACTTTTAATATC	NA	False	NA	NA	False	AATAAA	-16	NA	11315820	11296107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_11296352_11298215_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407_11312595_11315587
transcript_11446.nic	chr12	-	1690	11	ISM	ENSMUSG00000051235.11	ENSMUST00000166117.4	5268	14	-41	9051	-6	-230	5prime_fragment	FALSE	canonical	3	39	junction_8	5.88302643203309	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTTTATTTTTTAAAT	NA	False	NA	NA	False	NA	NA	NA	11315808	11297971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_11298347_11299130_11299212_11300052_11300090_11300714_11300866_11302004_11302094_11304351_11304426_11305157_11305269_11306838_11307016_11310882_11311070_11312407_11312595_11315587
transcript_11448.known	chr12	+	5603	27	FSM	ENSMUSG00000020608.8	ENSMUST00000020931.6	5603	27	0	0	0	0	multi-exon	TRUE	canonical	3	574	junction_19	50.8148542090207	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGGTCATGCTTTTGTGA	4317	False	NA	NA	False	AATAAA	-23	NA	11315886	11369786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526_11341732_11344485_11344601_11344923_11345085_11347150_11347287_11348262_11348344_11349259_11349431_11350571_11350710_11351522_11351669_11356078_11356205_11359199_11359306_11364607_11364761_11366619_11366718_11367770
transcript_11451.nic	chr12	+	3642	25	NIC	ENSMUSG00000020608.8	novel	5272	26	NA	NA	-20	204	combination_of_known_junctions	FALSE	canonical	3	100	junction_2	124.985825585233	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTTTCCAGGTTG	4516	False	NA	15	True	AATAAA	-16	NA	11316085	11368248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_11316290_11321729_11321873_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311_11335411_11339128_11339276_11339637_11339727_11339892_11340058_11340713_11340893_11341526_11341732_11344485_11344601_11344923_11345085_11347150_11347287_11348262_11348344_11349259_11349431_11350571_11350710_11351522_11351669_11356078_11356205_11359199_11359306_11364607_11364761_11366619_11366718_11367770
transcript_11456.known	chr12	+	3373	10	FSM	ENSMUSG00000020608.8	ENSMUST00000218866.2	3373	10	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_2	43.5943704599856	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTATGTCATTGTGGGT	4560	False	NA	NA	False	TATAAA	-20	NA	11316129	11337655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_11316290_11321729_11321873_11323994_11324113_11326260_11326367_11329605_11329743_11330341_11330404_11332360_11332442_11333071_11333174_11335098_11335219_11335311
transcript_11463.known	chr12	+	614	1	FSM	ENSMUSG00000078377.6	ENSMUST00000105169.6	614	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACGTGATATTTGTAAAAT	NA	False	NA	NA	False	NA	NA	NA	12073045	12073659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_12073000_12073700
transcript_11464.known	chr12	+	9452	13	FSM	ENSMUSG00000020589.18	ENSMUST00000069066.14	9452	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	32.1829621936135	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGACTTGGCTTCGTTC	NA	False	NA	NA	False	NA	NA	NA	12312139	12430966	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_12312240_12326343_12326417_12354181_12354324_12390679_12390760_12408045_12408168_12409213_12409320_12411435_12411573_12412015_12412094_12412252_12412370_12412461_12412542_12414720_12414848_12419894_12419966_12422747
transcript_11466.known	chr12	+	1771	12	FSM	ENSMUSG00000020589.18	ENSMUST00000069005.10	1771	12	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	14.2718586881045	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGGTTTGTGTCCCTT	NA	False	NA	NA	False	NA	NA	NA	12312177	12423396	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_12312240_12354181_12354324_12390679_12390760_12408045_12408168_12409213_12409320_12411435_12411573_12412015_12412094_12412252_12412370_12412461_12412542_12414720_12414848_12419894_12419966_12422747
transcript_11469.known	chr12	+	315	1	FSM	ENSMUSG00000066629.3	ENSMUST00000085720.3	315	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2947	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGAACCCTCCCCCAATA	NA	False	NA	NA	False	NA	NA	NA	12962022	12962337	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_12962000_12962300
transcript_11470.known	chr12	-	2674	3	FSM	ENSMUSG00000037169.16	ENSMUST00000043396.15	2674	3	0	0	0	0	multi-exon	FALSE	canonical	3	794	junction_2	66.5	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGATGTTTTCCTTCCTAG	NA	False	NA	-18	True	AATAAA	-20	NA	12991915	12986093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_12987612_12989610_12990488_12991636
transcript_11471.known	chr12	-	2522	2	FSM	ENSMUSG00000037169.16	ENSMUST00000130990.2	2522	2	0	0	0	0	multi-exon	FALSE	canonical	3	927	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCGATGTTTTCCTTCC	NA	False	NA	-21	True	AATAAA	-17	NA	12990617	12986096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_12987612_12989610
transcript_11473.known	chr12	-	4842	26	FSM	ENSMUSG00000037149.11	ENSMUST00000071103.10	4842	26	0	0	0	0	multi-exon	FALSE	canonical	3	1685	junction_15	174.121171601847	271	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGCTGTGTGTTTATAGA	NA	False	NA	NA	False	ATTAAA	-22	NA	13299214	13266973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_13269630_13270347_13270469_13270738_13270835_13273676_13273720_13273793_13273867_13273942_13274016_13275399_13275492_13277305_13277453_13279093_13279146_13279242_13279432_13280292_13280383_13281445_13281545_13284040_13284102_13285994_13286134_13287213_13287329_13287729_13287807_13289106_13289180_13289491_13289569_13290559_13290644_13290851_13290936_13292300_13292349_13293860_13293958_13294968_13294999_13295686_13295751_13296026_13296079_13299104
transcript_1149.nnic	chr1	+	1058	6	Fusion	ENSMUSG00000086730.3_ENSMUSG00000027520.17	novel	462	2	NA	NA	-135	8178	multi-exon	FALSE	canonical	3	22	junction_2	8.44748483277715	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACTAAGTATAAATTTAG	NA	False	NA	NA	False	ACTAAA	-12	NA	63239731	63342359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr1_+_63239834_63246673_63246774_63317089_63317143_63319925_63320037_63334074_63334206_63341798
transcript_11490.known	chr12	-	948	1	FSM	ENSMUSG00000071414.6	ENSMUST00000166583.4	948	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCTGTGGCGAGCGGAT	NA	False	NA	NA	False	NA	NA	NA	13505971	13505023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_13505000_13506000
transcript_11491.known	chr12	-	5581	21	FSM	ENSMUSG00000020593.17	ENSMUST00000067124.6	5581	21	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_16	22.2780160696593	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGAATCCACAAGCCCCAG	7242	False	NA	NA	False	NA	NA	NA	16639771	16585669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_16588574_16590914_16591019_16591714_16591830_16594644_16594798_16596721_16596809_16597486_16597636_16598877_16599005_16603949_16604030_16608409_16608503_16610982_16611053_16612363_16612458_16613622_16613814_16614526_16614621_16615391_16615699_16618390_16618521_16621164_16621264_16623660_16623787_16626948_16627257_16629882_16629979_16630704_16630906_16639718
transcript_11492.known	chr12	+	2362	8	FSM	ENSMUSG00000057469.9	ENSMUST00000221541.2	2362	8	0	0	0	0	multi-exon	FALSE	canonical	2	121	junction_1	60.8859757318245	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGCGTGCCTGTGTTTC	7532	False	NA	4	True	ATTAAA	-15	NA	16861099	16876753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_16861317_16863847_16863914_16866400_16866456_16868841_16869059_16870229_16870386_16872093_16872209_16874570_16874719_16875365
transcript_11494.known	chr12	-	1928	7	FSM	ENSMUSG00000045679.15	ENSMUST00000054536.11	1928	7	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	25.4165300542777	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTAAGCTGTCATGAATT	NA	False	NA	1	True	AATAAA	-26	NA	17050119	17038648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_17039897_17042278_17042321_17043453_17043575_17045614_17045673_17047634_17047705_17047774_17047858_17049813
transcript_11495.known	chr12	-	1706	6	FSM	ENSMUSG00000045679.15	ENSMUST00000222203.2	1706	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	66.9943281181325	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTAGTTTTCTATATTTA	NA	False	NA	-49	True	AGTAAA	-18	NA	17050068	17038698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_17039897_17042278_17042321_17045614_17045673_17047634_17047705_17047774_17047858_17049813
transcript_11496.known	chr12	-	922	6	FSM	ENSMUSG00000045679.15	ENSMUST00000067572.13	922	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	73.8322422793728	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTAGTGTTTTGCCCAA	NA	False	NA	NA	False	ATTAAA	-12	NA	17050026	17042961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_17043339_17043453_17043575_17045614_17045673_17047634_17047705_17047774_17047858_17049813
transcript_11499.known	chr12	+	2125	13	FSM	ENSMUSG00000020571.14	ENSMUST00000239402.2	2125	13	0	0	0	0	multi-exon	FALSE	canonical	3	2590	junction_6	180.731134715509	2681	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACGTCTGTGATTATCTTC	NA	False	NA	NA	False	AATAAA	-12	NA	17316595	17334771	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911_17331071_17333200_17333298_17333938
transcript_115.known	SIRV4	-	592	4	FSM	SIRV4A	SIRV404	592	4	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_3	2787.93595494747	1151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGATATTTAGAGCGTA	NA	False	NA	NA	False	NA	NA	NA	14623	8322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV4_-_8373_8629_8991_13672_13823_14592
transcript_11503.known	chr12	-	1425	13	FSM	ENSMUSG00000020566.20	ENSMUST00000221129.2	1425	13	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_8	6.04841577054135	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTCTTTTCTTGTGTTCT	NA	False	NA	-2	True	AATAAA	-12	NA	17374731	17334725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_17334950_17335113_17335247_17338083_17338182_17341429_17341524_17341628_17341722_17344145_17344215_17344676_17344776_17347729_17347822_17351121_17351217_17358272_17358359_17371598_17371667_17373338_17373512_17374630
transcript_11509.known	chr12	+	1986	11	FSM	ENSMUSG00000020571.14	ENSMUST00000162936.8	1986	11	0	0	0	0	multi-exon	FALSE	canonical	3	2590	junction_6	177.381199680237	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTTTTAGAGTTTTGTGT	NA	False	NA	NA	False	AATAAA	-14	NA	17316545	17331811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_17316653_17320396_17320539_17323945_17324004_17324384_17324512_17327198_17327306_17328514_17328646_17328836_17328952_17329579_17329721_17330378_17330464_17330567_17330641_17330911
transcript_1151.known	chr1	+	4486	12	FSM	ENSMUSG00000025962.16	ENSMUST00000027103.7	4486	12	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_4	54.5943720043143	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGTACAGTTTGATACTT	NA	False	NA	NA	False	NA	NA	NA	63769772	63793814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_63769851_63770558_63771381_63773890_63773995_63774621_63774731_63775003_63775128_63776937_63777078_63778340_63778514_63785000_63785165_63787116_63787330_63788844_63788930_63790422_63790538_63791455
transcript_11518.known	chr12	+	3021	21	FSM	ENSMUSG00000061458.10	ENSMUST00000046011.12	3021	21	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_7	25.2103153490788	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTATTTGTTTAGCTTA	NA	False	NA	14	True	AATAAA	-17	NA	17398458	17480096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_17398621_17400516_17400563_17402641_17402741_17405237_17405316_17406921_17406960_17408102_17408240_17409090_17409157_17411134_17411196_17412595_17412682_17418309_17418389_17419466_17419617_17423562_17423630_17429248_17429302_17452073_17452201_17454971_17455052_17455233_17455333_17456807_17456898_17466028_17466200_17466714_17466963_17474650_17474754_17479115
transcript_11520.known	chr12	+	2208	12	FSM	ENSMUSG00000011179.9	ENSMUST00000171737.3	2208	12	0	0	0	0	multi-exon	FALSE	canonical	3	389	junction_11	306.963561516955	893	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCAGGGAATGTTTGCAAG	NA	False	NA	NA	False	AATAAA	-20	NA	17594794	17601085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_17595170_17597096_17597195_17597283_17597402_17597633_17597808_17597950_17598124_17598309_17598445_17598545_17598628_17598787_17598872_17599424_17599588_17599668_17599782_17599863_17600079_17600607
transcript_11523.nnic	chr12	+	1665	5	NIC	ENSMUSG00000071379.3	novel	1526	4	NA	NA	-53	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	31.8541598539343	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGAGTTTCCTGTGT	8571	False	NA	17	True	AATAAA	-5	NA	17740803	17841934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_17741048_17817214_17817301_17836147_17836550_17837545_17837652_17841107
transcript_11525.known	chr12	+	697	5	FSM	ENSMUSG00000071379.3	ENSMUST00000222944.2	697	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	35.2304910553344	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCATCAAAGGTGCCAAGAG	NA	False	NA	NA	False	NA	NA	NA	17778226	17841127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_17778310_17817214_17817301_17836147_17836550_17837545_17837652_17841107
transcript_11527.known	chr12	+	1526	4	FSM	ENSMUSG00000071379.3	ENSMUST00000071858.5	1526	4	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	8.52447456836295	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGAGTTTCCTGTGT	8624	False	NA	17	True	AATAAA	-5	NA	17740856	17841934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_17741048_17836147_17836550_17837545_17837652_17841107
transcript_11528.nnic	chr12	+	1557	4	NIC	ENSMUSG00000071379.3	novel	697	5	NA	NA	-139	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	39.0412886854702	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTGAGTTTCCTGTGT	NA	False	NA	17	True	AATAAA	-5	NA	17778087	17841934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_17778310_17836147_17836550_17837545_17837652_17841107
transcript_11530.known	chr12	+	393	1	FSM	ENSMUSG00000116705.2	ENSMUST00000232472.2	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAACTCTATAGTCTCCAT	NA	False	NA	NA	False	NA	NA	NA	19458348	19458741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_19458300_19458700
transcript_11531.known	chr12	+	654	4	FSM	ENSMUSG00000116606.2	ENSMUST00000232483.2	654	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	49.1008033426021	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCCTTTGCACAACTCA	NA	False	NA	NA	False	NA	NA	NA	20476913	20485418	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_20476993_20483306_20483434_20483635_20483697_20485031
transcript_11532.known	chr12	-	1471	1	FSM	ENSMUSG00000091071.3	ENSMUST00000110971.3	1471	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAACTAGACTA	NA	False	NA	NA	False	AAGAAA	-25	NA	20865728	20864257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_20864300_20865700
transcript_11536.known	chr12	+	2499	18	FSM	ENSMUSG00000054309.10	ENSMUST00000067284.10	2499	18	0	0	0	0	multi-exon	FALSE	canonical	3	692	junction_10	70.3324286444819	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTTGTGCCACAGCTTT	NA	False	NA	NA	False	NA	NA	NA	21336358	21365057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355457_21356773_21356883_21357993_21358093_21358904_21359000_21360197_21360286_21362298_21362369_21363767_21363865_21364648
transcript_11546.known	chr12	-	1701	7	FSM	ENSMUSG00000062352.16	ENSMUST00000173729.8	1701	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_6	78.2148039411693	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAATCACTGCATTAAGAC	NA	False	NA	NA	False	ATTAAA	-13	NA	21336098	21320093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21335852
transcript_11547.known	chr12	-	1921	7	FSM	ENSMUSG00000062352.16	ENSMUST00000076260.12	1921	7	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_3	20.4728817924807	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGCTTTCCTTTCAGTT	NA	False	NA	NA	False	TATAAA	-10	NA	21336285	21319806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_21320959_21321419_21321570_21322056_21322150_21324766_21324904_21326820_21326900_21329400_21329532_21336106
transcript_11551.known	chr12	+	1858	13	FSM	ENSMUSG00000054309.10	ENSMUST00000222968.2	1858	13	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_11	221.93434652317	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCCTAAAATTTTATTTA	NA	False	NA	NA	False	TTTAAA	-6	NA	21336399	21358237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_21336546_21340248_21340313_21341751_21341850_21343226_21343356_21345030_21345209_21346647_21346738_21347789_21347941_21350042_21350219_21351416_21351576_21352359_21352507_21355303_21355471_21356773_21356883_21357993
transcript_11552.known	chr12	-	4443	19	FSM	ENSMUSG00000052593.17	ENSMUST00000064536.13	4443	19	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_17	16.3499537508313	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATGAATGATACGAGCCA	NA	False	NA	NA	False	AATAAA	-36	NA	21423633	21373517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_21375628_21376119_21376171_21378045_21378135_21379054_21379134_21380033_21380165_21382076_21382212_21382570_21382675_21383954_21384155_21386633_21386787_21390472_21390562_21390675_21390821_21392864_21392979_21395621_21395712_21397297_21397432_21399785_21399955_21401543_21401633_21403883_21404015_21411659_21411793_21423336
transcript_11554.known	chr12	+	1141	6	FSM	ENSMUSG00000062054.8	ENSMUST00000076813.8	1141	6	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_4	39.1131691377725	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCACAATTTTATAAAAATG	NA	False	NA	NA	False	AATACA	-25	NA	21366389	21373820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770_21369933_21371334_21371457_21373289
transcript_11556.nnic	chr12	+	925	6	NIC	ENSMUSG00000062054.8	novel	1141	6	NA	NA	-28	-212	combination_of_known_splicesites	FALSE	canonical	3	85	junction_2	143.346293987672	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTTCATGATTATTGA	NA	False	NA	9	True	ATTAAA	-19	NA	21366361	21373608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_21366514_21367376_21367430_21367930_21368048_21369770_21369933_21371334_21371457_21373289
transcript_11564.known	chr12	+	1890	4	FSM	ENSMUSG00000062054.8	ENSMUST00000223345.2	1890	4	0	0	0	0	multi-exon	FALSE	canonical	3	412	junction_2	19.3964487013015	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGTTGGTGAATATGCAA	NA	False	NA	NA	False	ATTAAA	-13	NA	21366414	21371359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_21366514_21367376_21367430_21367898_21368048_21369770
transcript_11566.known	chr12	-	1970	7	FSM	ENSMUSG00000076432.14	ENSMUST00000155480.9	1970	7	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_1	1514.35583114846	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTATTATGGCTTTGTA	NA	False	NA	NA	False	AATAAA	-17	NA	21467589	21440332	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_21441417_21441717_21441801_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
transcript_11570.known	chr12	-	2197	6	FSM	ENSMUSG00000076432.14	ENSMUST00000135088.9	2197	6	0	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_5	274.352328220484	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGGCTGGTATTAGAAT	NA	False	NA	-12	True	AATAAA	-18	NA	21467638	21440071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_21441417_21444965_21445062_21446282_21446447_21448241_21448366_21466798_21467133_21467504
transcript_11583.nic	chr12	+	511	5	NIC	ENSMUSG00000109975.2	novel	363	4	NA	NA	-44	6	combination_of_known_junctions	FALSE	canonical	3	112	junction_2	32.0507410210747	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAAGGCGTTTTTTTTTTTT	6056	False	NA	NA	False	ACTAAA	-24	NA	21593263	21604528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_21593347_21595309_21595401_21599867_21599956_21604009_21604108_21604377
transcript_11584.nic	chr12	+	671	5	NIC	ENSMUSG00000109975.2	novel	363	4	NA	NA	-44	166	combination_of_known_junctions	FALSE	canonical	3	112	junction_2	32.0507410210747	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTTCTGTCTTAGTTA	6056	False	NA	NA	False	ATTAAA	-18	NA	21593263	21604688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_21593347_21595309_21595401_21599867_21599956_21604009_21604108_21604377
transcript_11587.known	chr12	+	363	4	FSM	ENSMUSG00000109975.2	ENSMUST00000211164.2	363	4	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	54.7783412186483	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGACAAAGGCGTTTTTT	6100	False	NA	NA	False	ACTAAA	-18	NA	21593307	21604522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_21593347_21595309_21595401_21599867_21599956_21604377
transcript_11592.known	chr12	+	2209	15	FSM	ENSMUSG00000059669.9	ENSMUST00000075954.9	2209	15	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_4	28.2355254592363	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTGGAAACTTGCAT	NA	False	NA	12	True	ATTAAA	-21	NA	24548357	24608538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
transcript_11596.known	chr12	+	1840	14	FSM	ENSMUSG00000059669.9	ENSMUST00000221372.2	1840	14	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	59.0833329855924	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACCTGGAAACTTGCAT	NA	False	NA	12	True	ATTAAA	-21	NA	24548628	24608538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417_24599509_24605988_24606060_24606517_24606741_24608161
transcript_11597.known	chr12	+	1484	12	FSM	ENSMUSG00000059669.9	ENSMUST00000223503.2	1484	12	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_4	27.2065864655498	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATTTCCCCGTTTTTTTCT	NA	False	NA	NA	False	ATTAAA	-14	NA	24548627	24599724	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559082_24559181_24559452_24559549_24564783_24564935_24566857_24567009_24573100_24573201_24594269_24594418_24597011_24597190_24597568_24597616_24599417
transcript_116.known	SIRV4	-	670	4	FSM	SIRV4A	SIRV403	670	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3065.46367708958	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGATATTTAGAGCGTA	NA	False	NA	NA	False	NA	NA	NA	15122	8322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV4_-_8373_8629_8991_13672_13829_15019
transcript_11601.known	chr12	+	521	4	FSM	ENSMUSG00000059669.9	ENSMUST00000222710.2	521	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	107.002596022506	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTTCTGTCTTAGTTA	NA	False	NA	NA	False	ATTAAA	-18	NA	24548609	24559747	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_24548649_24550434_24550534_24554945_24555034_24559452
transcript_11602.known	chr12	+	4086	4	FSM	ENSMUSG00000020653.13	ENSMUST00000020982.7	4086	4	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_3	19.258475767539	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGATGTGTTATATAACTGT	NA	False	NA	18	True	TATAAA	-29	NA	24701272	24712788	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_24701566_24703557_24703810_24704841_24705776_24710181
transcript_11607.known	chr12	+	2193	10	FSM	ENSMUSG00000020649.12	ENSMUST00000020980.12	2193	10	0	0	0	0	multi-exon	FALSE	canonical	3	5416	junction_9	442.930588436653	315	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCTTTGGGTAAAATGTAC	NA	False	NA	72	True	ATTAAA	-26	NA	24758239	24764145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_24758445_24758558_24758634_24758937_24759085_24759323_24759441_24760355_24760490_24761445_24761541_24761667_24761802_24762659_24762765_24762859_24762974_24763078
transcript_11619.known	chr12	+	2351	13	FSM	ENSMUSG00000020646.18	ENSMUST00000110942.11	2351	13	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_3	25.3874148611735	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAGGGAAGCTAAGATAA	NA	False	NA	NA	False	NA	NA	NA	24881621	25009873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_24881774_24928189_24928336_24932715_24932794_24974197_24974294_24984565_24984622_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
transcript_11623.known	chr12	+	6792	12	FSM	ENSMUSG00000020646.18	ENSMUST00000221952.2	6792	12	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	37.4053074415034	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACCTGTGTTTGTGTTTGC	NA	False	NA	NA	False	ATTAAA	-14	NA	24881607	25014396	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_24881774_24928189_24928336_24932715_24932794_24984565_24984622_24989292_24989348_24996504_24996686_24998186_24998380_25001384_25001489_25004184_25004250_25005275_25005409_25007571_25007724_25008933
transcript_11626.known	chr12	+	1115	8	FSM	ENSMUSG00000036333.12	ENSMUST00000221378.2	1115	8	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_5	7.39553091745416	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAATGTCCTTATTTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	25024927	25045155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_25025062_25032235_25032377_25036902_25037002_25038530_25038630_25039736_25039836_25040674_25040774_25042208_25042308_25044810
transcript_11627.known	chr12	-	1270	3	FSM	ENSMUSG00000020644.10	ENSMUST00000020974.7	1270	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCCGGGATTCTGAATGG	NA	False	NA	NA	False	AATAAA	-15	NA	25146091	25143799	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_25144576_25145309_25145374_25145661
transcript_11629.known	chr12	-	3782	6	FSM	ENSMUSG00000020641.17	ENSMUST00000020970.10	3782	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.01980390271856	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTGTTAGTATCTCTTT	NA	False	NA	NA	False	ATTAAA	-23	NA	26506451	26492744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_26495570_26497150_26497184_26498581_26498732_26500544_26500775_26504016_26504179_26506069
transcript_11630.known	chr12	+	3200	5	FSM	ENSMUSG00000020638.9	ENSMUST00000020969.5	3200	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	0.433012701892219	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTTCGTCATCATTGCT	NA	False	NA	NA	False	AATAAA	-20	NA	26519202	26529836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_26520026_26521404_26521520_26523994_26524197_26527004_26527239_26528010
transcript_11631.nnic	chr12	-	1804	13	NNC	ENSMUSG00000020636.15	novel	1500	12	NA	NA	6837	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	2.62995563967658	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCTTGATCTCCTGTTG	9559	False	NA	NA	False	AATAAA	-17	NA	28625677	28603753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_28604047_28605262_28605388_28607340_28607450_28609237_28609312_28609868_28610025_28613369_28613503_28614233_28614314_28615395_28615525_28618000_28618089_28620608_28620660_28623175_28623379_28625252_28625322_28625383
transcript_11632.nnic	chr12	-	1345	11	NNC	ENSMUSG00000020636.15	novel	1384	12	NA	NA	11488	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	2.7	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTCTTGATCTCCTGTTG	2433	False	NA	NA	False	AATAAA	-17	NA	28621026	28603753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_28604047_28605262_28605388_28607340_28607450_28609237_28609312_28609868_28610025_28613369_28613503_28614233_28614314_28615395_28615525_28618000_28618089_28620608_28620660_28620919
transcript_11635.known	chr12	-	954	7	FSM	ENSMUSG00000061477.5	ENSMUST00000074267.5	954	7	0	0	0	0	multi-exon	TRUE	canonical	3	10789	junction_4	2567.89392736971	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTTTATGTCCTATTCTG	NA	False	NA	-7	True	NA	NA	NA	28685952	28680852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578_28685663_28685854
transcript_11643.known	chr12	-	820	6	FSM	ENSMUSG00000061477.5	ENSMUST00000221871.2	820	6	0	0	0	0	multi-exon	FALSE	canonical	3	10789	junction_4	2615.27425712869	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGGTTGTAGTAACTTGT	NA	False	NA	-11	True	AATAAA	-15	NA	28685856	28681082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_28681193_28681622_28681774_28683766_28683832_28684207_28684352_28685414_28685487_28685578
transcript_11651.nnic	chr12	+	1421	8	NNC	ENSMUSG00000020630.10	novel	1455	8	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	86.1162005664439	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACATCTAGTTTGAGTTA	NA	False	NA	13	True	AATAAA	-21	NA	28699606	28709588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_28699816_28702023_28702140_28703061_28703196_28705583_28705684_28707270_28707326_28707631_28707717_28708169_28708295_28708991
transcript_11654.known	chr12	+	1455	8	FSM	ENSMUSG00000020630.10	ENSMUST00000020959.9	1455	8	0	0	0	0	multi-exon	TRUE	canonical	3	155	junction_3	35.1318217284442	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACATCTAGTTTGAGTTA	NA	False	NA	13	True	AATAAA	-21	NA	28699600	28709588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_28699816_28702023_28702140_28703061_28703224_28705583_28705684_28707270_28707326_28707631_28707717_28708169_28708295_28708991
transcript_11660.known	chr12	+	1368	7	FSM	ENSMUSG00000020630.10	ENSMUST00000223322.2	1368	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	93.4768242221924	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAGAACACATCTAGTTT	NA	False	NA	7	True	AATAAA	-15	NA	28699622	28709582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_28699816_28702023_28702140_28703061_28703224_28705583_28705684_28707635_28707717_28708169_28708295_28708991
transcript_11661.known	chr12	+	1652	4	FSM	ENSMUSG00000020629.13	ENSMUST00000020957.13	1652	4	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_2	13.6950923894494	459	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTCTCTCGAGAGTTCT	NA	False	NA	15	True	NA	NA	NA	28725229	28732174	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_28725372_28727776_28727897_28729388_28729569_28730964
transcript_11662.known	chr12	-	3377	12	FSM	ENSMUSG00000020628.17	ENSMUST00000020954.15	3377	12	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_11	21.61993264567	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTCCTGAGGAGACATGAG	8249	False	NA	-30	True	AATAAA	-19	NA	28800452	28740627	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_28741557_28741757_28741846_28742492_28742594_28747142_28747242_28751534_28751609_28753524_28753598_28761870_28761984_28771050_28771190_28772361_28772476_28787731_28787849_28796297_28797536_28800160
transcript_11663.known	chr12	-	3230	12	FSM	ENSMUSG00000020628.17	ENSMUST00000168129.10	3230	12	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_11	21.4240924087157	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCTGAGGAGACATGAGC	8230	False	NA	-29	True	AATAAA	-20	NA	28800471	28740626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_28741557_28741757_28741846_28742492_28742594_28747142_28747242_28751534_28751609_28753524_28753598_28761870_28761984_28771050_28771190_28772361_28772476_28787731_28787849_28796297_28797536_28800327
transcript_1167.known	chr1	-	7662	4	FSM	ENSMUSG00000025959.14	ENSMUST00000114086.8	7662	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	3.85861230093008	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTCACTGTGTTTCCCCTC	NA	False	NA	-5	True	AATAAA	-27	NA	64160650	64068605	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_64074924_64081472_64081597_64117865_64118494_64160058
transcript_11671.known	chr12	+	1747	10	FSM	ENSMUSG00000036613.9	ENSMUST00000035657.9	1747	10	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	106.926188918072	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGGCTCTTTGTTTGTTTT	1150	False	NA	7	True	NA	NA	NA	28801853	28917490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_28802004_28810068_28810153_28816770_28816904_28843853_28843936_28878706_28878864_28897555_28897656_28909250_28909388_28912953_28913122_28914668_28914834_28916919
transcript_11674.known	chr12	+	4091	9	FSM	ENSMUSG00000036613.9	ENSMUST00000221877.2	4091	9	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_3	17.1641887370187	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATCTAACTTGTCTAGC	1098	False	NA	NA	False	ATTAAA	-19	NA	28801801	28919864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_28802004_28810068_28810153_28816770_28816904_28878706_28878864_28897555_28897656_28909250_28909388_28912953_28913122_28914668_28914834_28916919
transcript_11675.known	chr12	+	489	2	FSM	ENSMUSG00000036613.9	ENSMUST00000222407.2	489	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAATTTGTAATGATTGC	1134	False	NA	NA	False	NA	NA	NA	28801837	28802741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_28802004_28802418
transcript_11676.known	chr12	-	2411	17	FSM	ENSMUSG00000020672.15	ENSMUST00000021004.14	2411	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTCTTGAGTTTCCTTTC	NA	False	NA	NA	False	ATTAAA	-13	NA	30423374	30224481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_30225259_30245536_30245648_30251273_30251367_30276766_30276974_30279574_30279647_30286587_30286705_30293302_30293342_30295116_30295247_30307964_30308093_30317029_30317122_30326660_30326749_30338124_30338167_30338270_30338315_30357170_30357229_30357325_30357383_30362534_30362673_30423156
transcript_11677.known	chr12	-	1830	17	FSM	ENSMUSG00000020672.15	ENSMUST00000133324.8	1830	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATGGGTCAGACTGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	30423327	30224992	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_30225259_30245536_30245648_30251273_30251367_30276766_30276974_30279574_30279647_30286587_30286705_30293302_30293342_30295116_30295247_30307964_30308093_30317029_30317122_30326660_30326749_30338124_30338167_30338270_30338315_30357170_30357229_30357325_30357360_30362534_30362673_30423156
transcript_1168.nnic	chr1	-	969	4	NIC	ENSMUSG00000025959.14	novel	7662	4	NA	NA	-32	-6214	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	4.24264068711928	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACAAGAACAAAACACCGC	NA	False	NA	NA	False	NA	NA	NA	64161473	64074819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_64074924_64081472_64081597_64117865_64118494_64161360
transcript_11682.nnic	chr12	+	2614	6	NNC	ENSMUSG00000043061.11	novel	2971	5	NA	NA	-14	4	at_least_one_novel_splicesite	FALSE	non_canonical	3	81	junction_5	38.6812616133445	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTGTGCTTTCGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	30634410	30641218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650_30640423_30640797
transcript_11683.known	chr12	+	2971	5	FSM	ENSMUSG00000043061.11	ENSMUST00000057151.10	2971	5	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	9.17877987534291	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATACAGTGTGCTTTCGT	NA	False	NA	NA	False	AATAAA	-12	NA	30634424	30641214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_30634562_30635468_30635590_30637198_30637254_30638472_30638567_30638650
transcript_11687.nnic	chr12	+	1380	3	Intergenic	novelGene_2	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	23	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGTCAGAACTCTCGC	NA	False	NA	NA	False	NA	NA	NA	30631454	30634373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Intergenic_chr12_+_30631943_30633078_30633302_30633704
transcript_11689.known	chr12	-	2754	6	FSM	ENSMUSG00000044573.17	ENSMUST00000074038.7	2754	6	0	0	0	0	multi-exon	FALSE	canonical	3	735	junction_4	354.017287713467	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTTTGGGATTTTAATTG	NA	False	NA	NA	False	ATTAAA	-23	NA	30961588	30943654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954716_30954831_30955067_30955142_30961488
transcript_11690.known	chr12	-	668	6	FSM	ENSMUSG00000044573.17	ENSMUST00000219697.2	668	6	0	0	0	0	multi-exon	FALSE	canonical	3	794	junction_3	322.338331571037	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTCCTAAGCCCCACCAT	NA	False	NA	NA	False	NA	NA	NA	30961570	30945874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954716_30954983_30955067_30955142_30961488
transcript_11691.known	chr12	-	3066	6	FSM	ENSMUSG00000044573.17	ENSMUST00000062740.15	3066	6	0	0	0	0	multi-exon	FALSE	canonical	3	836	junction_3	311.492279198057	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGTTCTGTTGGTTTCC	NA	False	NA	NA	False	AATAAA	-32	NA	30961570	30943324	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_30945953_30946114_30946221_30947743_30947806_30954868_30954983_30955067_30955142_30961488
transcript_11694.known	chr12	+	1750	10	FSM	ENSMUSG00000020669.16	ENSMUST00000020997.15	1750	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	6.36153564813317	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACTTTGTGTTCACTCAAT	8039	False	NA	16	True	AATAAA	-24	NA	30961666	31010161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_30962227_30972233_30972345_30974762_30974877_30976808_30976874_30989572_30989686_30990289_30990419_30991965_30992129_30992788_30992868_31008846_31008904_31009802
transcript_11696.known	chr12	+	5557	34	FSM	ENSMUSG00000002900.18	ENSMUST00000169088.8	5557	34	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	26.2601941375773	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGGGGCTGTAGAGGG	NA	False	NA	NA	False	NA	NA	NA	31315232	31379492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_31315344_31315478_31315601_31316689_31316866_31319055_31319192_31322428_31322503_31328460_31328650_31328734_31328799_31332555_31332759_31335624_31335746_31337414_31337604_31337877_31338058_31338201_31338315_31339340_31339421_31347624_31347761_31348811_31348971_31349922_31350051_31350205_31350330_31351004_31351210_31352560_31352705_31352902_31353135_31354588_31354753_31355765_31355991_31356973_31357189_31357948_31358046_31368262_31368633_31369917_31370103_31370896_31371139_31373460_31373665_31374174_31374320_31376168_31376377_31376566_31376709_31377643_31377821_31379108_31379269_31379355
transcript_11701.known	chr12	-	2544	14	FSM	ENSMUSG00000020664.11	ENSMUST00000110857.5	2544	14	0	0	0	0	multi-exon	FALSE	canonical	3	710	junction_4	70.0417457938204	682	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTACAATTTATATTTATT	NA	False	NA	NA	False	AGTAAA	-18	NA	31401452	31381275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_31382242_31382337_31382428_31383423_31383562_31383865_31384056_31384611_31384783_31385464_31385656_31390278_31390381_31390862_31391007_31391376_31391478_31392742_31392813_31393373_31393443_31394821_31394902_31399595_31399675_31401299
transcript_1171.known	chr1	+	8364	8	FSM	ENSMUSG00000025958.15	ENSMUST00000087366.11	8364	8	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	12.7375389286621	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTGTGTCTAGCTT	NA	False	NA	NA	False	NA	NA	NA	64571977	64643707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_64572180_64590007_64590130_64597661_64597809_64605375_64605477_64609292_64609436_64613231_64613415_64615337_64615489_64636392
transcript_11711.known	chr12	-	3900	6	FSM	ENSMUSG00000020659.17	ENSMUST00000101499.10	3900	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_4	37.6542162313864	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCCTAGATGAGTCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	31549615	31534934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_31538314_31540466_31540541_31541510_31541595_31542077_31542179_31544580_31544749_31549521
transcript_11718.known	chr12	-	6155	8	FSM	ENSMUSG00000020650.16	ENSMUST00000177962.9	6155	8	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_3	46.0678293167714	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTGACCACTGGTGTAT	NA	False	NA	NA	False	CATAAA	-16	NA	31684634	31640965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_31646377_31650642_31650744_31667073_31667180_31674113_31674250_31676724_31676876_31680791_31680893_31684261_31684380_31684603
transcript_11724.known	chr12	-	1773	7	FSM	ENSMUSG00000020648.4	ENSMUST00000020977.4	1773	7	0	0	0	0	multi-exon	FALSE	canonical	2	86	junction_6	14.7016627933336	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACGGTATGACTCGCCTGTA	9060	False	NA	-5	True	AATAAA	-17	NA	31704825	31690048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_31690944_31691500_31691728_31692762_31692886_31696619_31696738_31698764_31698887_31702289_31702441_31704688
transcript_11728.known	chr12	+	2997	23	FSM	ENSMUSG00000035933.6	ENSMUST00000036862.5	2997	23	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_22	24.2086317506725	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGTGTTTCTTCCTTCCA	NA	False	NA	12	True	AATAAA	-19	NA	31704867	31987629	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_31704983_31710715_31710856_31715463_31715522_31719768_31719824_31720314_31720385_31735651_31735773_31810845_31810977_31840845_31841012_31851981_31852095_31852404_31852483_31870123_31870206_31883180_31883386_31887193_31887356_31889753_31889854_31919417_31919529_31920070_31920134_31936203_31936308_31943969_31944208_31950895_31950973_31969649_31969777_31970552_31970633_31975643_31975791_31987175
transcript_11737.known	chr12	-	3142	11	FSM	ENSMUSG00000002996.18	ENSMUST00000172314.9	3142	11	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_10	30.1004983347452	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAACCCTGACTTCATTT	NA	False	NA	NA	False	AGTAAA	-10	NA	32000534	31976252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_31977507_31978582_31978725_31980680_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
transcript_11738.known	chr12	-	2733	9	FSM	ENSMUSG00000002996.18	ENSMUST00000167458.9	2733	9	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_8	33.3164280048147	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGCGCTTTCTCTACAT	NA	False	NA	NA	False	AATAAA	-42	NA	32000222	31979381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_31981005_31983355_31983501_31984283_31984441_31986970_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
transcript_11740.known	chr12	-	979	3	FSM	ENSMUSG00000002996.18	ENSMUST00000175666.2	979	3	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_2	45	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTGTAGATTGTTTCAT	NA	False	NA	NA	False	ATTAAA	-21	NA	32000233	31989749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_31990506_31993827_31994012_32000194
transcript_11741.known	chr12	-	1319	6	FSM	ENSMUSG00000002996.18	ENSMUST00000176103.8	1319	6	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_5	35.2669817251207	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAATACCAATTGAAAAT	NA	False	NA	NA	False	NA	NA	NA	32000220	31986457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_31987084_31987168_31987281_31987616_31987759_31990276_31990506_31993827_31994012_32000194
transcript_11743.known	chr12	+	4527	11	FSM	ENSMUSG00000020572.9	ENSMUST00000020886.9	4527	11	0	0	0	0	multi-exon	FALSE	canonical	3	823	junction_5	70.9532240282286	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTGTTAGTGAAATGTTA	NA	False	NA	-7	True	AATAAA	-18	NA	32870333	32903348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_32870626_32880165_32880323_32883030_32883135_32884900_32885030_32888297_32888457_32889149_32889287_32890923_32891150_32892683_32892804_32896704_32896846_32898615_32898751_32900421
transcript_11748.known	chr12	+	4999	6	FSM	ENSMUSG00000020570.16	ENSMUST00000076698.13	4999	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	113.462592954683	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACTTTTTTAAAAATGG	8132	False	NA	NA	False	NA	NA	NA	33003889	33029859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_33004018_33004286_33004359_33015371_33015500_33017534_33017743_33024126_33024319_33025588
transcript_11751.known	chr12	+	2019	5	FSM	ENSMUSG00000020570.16	ENSMUST00000020885.13	2019	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_3	20.9806458432528	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAGAATGCCCCGTT	8425	False	NA	NA	False	AATAAA	-7	NA	33004182	33026903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_33004359_33015371_33015500_33017534_33017743_33024126_33024319_33025588
transcript_11752.known	chr12	+	1675	4	FSM	ENSMUSG00000020564.18	ENSMUST00000110824.9	1675	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	2.35702260395516	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGCCTGTACATTGAGT	NA	False	NA	NA	False	NA	NA	NA	33197709	33301145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_33197915_33198431_33198501_33267710_33267816_33299849
transcript_11753.known	chr12	+	673	4	FSM	ENSMUSG00000020562.8	ENSMUST00000020878.8	673	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	13.0213499897497	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCATGTGTCTGGTTTCA	NA	False	NA	4	True	AATAAA	-14	NA	33444852	33451266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_33445198_33448277_33448443_33448546_33448635_33451191
transcript_11756.known	chr12	+	4325	4	FSM	ENSMUSG00000020561.9	ENSMUST00000020877.9	4325	4	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_3	49.8687165354081	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTCTTGTACAGCGACAT	NA	False	NA	NA	False	AATAAA	-37	NA	33479633	33491391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_33479908_33483503_33483646_33486934_33487144_33487691
transcript_1176.known	chr1	-	2030	4	FSM	ENSMUSG00000025956.11	ENSMUST00000114079.9	2030	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	6.34209919681348	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCAGTGTTGTCTTCTG	NA	False	NA	0	True	ATTAAA	-20	NA	64656401	64645631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_64647297_64654256_64654369_64655431_64655604_64656320
transcript_11761.known	chr12	+	6231	26	FSM	ENSMUSG00000020590.17	ENSMUST00000048519.17	6231	26	0	0	0	0	multi-exon	TRUE	canonical	3	72	junction_14	10.0218960281975	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATGTGTTTACTTGGCA	NA	False	NA	NA	False	AATAAA	-16	NA	35097184	35197478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_35097411_35128898_35129012_35132867_35132971_35135937_35136028_35136861_35136984_35141361_35141484_35141567_35141670_35142823_35142913_35148228_35148313_35150537_35150677_35151019_35151109_35153039_35153140_35155105_35155300_35156711_35156817_35157422_35157556_35160622_35160661_35162433_35162504_35169764_35169905_35172916_35173025_35174428_35174540_35182019_35182182_35183307_35183380_35188024_35188171_35188398_35188468_35190166_35190280_35194087
transcript_11763.known	chr12	+	1145	7	FSM	ENSMUSG00000020590.17	ENSMUST00000222101.2	1145	7	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_3	5.7373048260195	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATACTGTTTAATTTATTT	NA	False	NA	NA	False	AATAAA	-15	NA	35097215	35141967	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_35097411_35128898_35129012_35132867_35132971_35135937_35136028_35136861_35136984_35141361_35141484_35141567
transcript_11764.known	chr12	-	1932	6	FSM	ENSMUSG00000020577.18	ENSMUST00000020896.17	1932	6	0	0	0	0	multi-exon	FALSE	canonical	3	804	junction_3	64.3913037606787	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATGGGTGTTTAAATCAA	NA	False	NA	-4	True	AATAAA	-20	NA	36092488	36064555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_36065772_36070488_36070603_36071799_36071914_36072751_36072833_36073903_36074072_36092249
transcript_11773.known	chr12	+	2456	10	FSM	ENSMUSG00000036188.5	ENSMUST00000041640.5	2456	10	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_5	20.5882622678524	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTTGTTTCATAATTCGT	NA	False	NA	21	True	AATAAA	-20	NA	36207112	36247290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_36207423_36215868_36215934_36220447_36220587_36226578_36226678_36232346_36232508_36236724_36236940_36237648_36237785_36243668_36243798_36244982_36245113_36246218
transcript_11776.known	chr12	-	1871	12	FSM	ENSMUSG00000020547.6	ENSMUST00000020856.6	1871	12	0	0	0	0	multi-exon	FALSE	canonical	3	931	junction_9	81.950499068161	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATATGGTCAGAGCGTGT	NA	False	NA	-11	True	AATAAA	-21	NA	36206824	36141833	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_36142309_36142965_36143089_36154260_36154400_36157494_36157642_36159703_36159875_36163966_36164077_36168985_36169122_36170717_36170784_36173933_36174038_36179990_36180168_36184889_36184955_36206666
transcript_11777.known	chr12	-	1567	4	FSM	ENSMUSG00000020547.6	ENSMUST00000222842.2	1567	4	0	0	0	0	multi-exon	FALSE	canonical	3	931	junction_1	59.7345982008938	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTAGTGAATTTTAAGGCC	NA	False	NA	NA	False	TTTAAA	-13	NA	36206720	36172766	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_36174038_36179990_36180168_36184889_36184955_36206666
transcript_11778.known	chr12	+	2690	10	FSM	ENSMUSG00000043153.7	ENSMUST00000062041.6	2690	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_5	4.59468291736341	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATGTCTCCTACAACAT	NA	False	NA	NA	False	AATAAA	-14	NA	36431517	36739443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_36432024_36440344_36440622_36476287_36476438_36523100_36523206_36526698_36526745_36551976_36552072_36571431_36571522_36571957_36572051_36597827_36597960_36738247
transcript_11779.known	chr12	+	1456	10	FSM	ENSMUSG00000043153.7	ENSMUST00000221177.2	1456	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.51494009523069	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTAAAGAATCTGTTCACT	NA	False	NA	NA	False	AATAAA	-18	NA	36432178	36738591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_36432303_36440344_36440622_36476287_36476438_36523100_36523206_36526698_36526745_36551976_36552072_36571431_36571522_36571957_36572051_36597827_36597960_36738247
transcript_11780.nnic	chr12	-	2020	3	NNC	ENSMUSG00000113608.2	novel	549	2	NA	NA	26835	905	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	0	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAAGTGTTATCTTCTTC	NA	False	NA	NA	False	AAAAAG	-45	NA	38098899	38096186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_38096710_38097291_38097424_38097534
transcript_11781.known	chr12	+	6576	13	FSM	ENSMUSG00000004151.18	ENSMUST00000095767.11	6576	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	7.23225798458238	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGGTTGTCGTGATCACT	325	False	NA	NA	False	AATAAA	-19	NA	38830080	38920483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_38830421_38830846_38830979_38831797_38831886_38833236_38833285_38843169_38843224_38877776_38877907_38881079_38881269_38885067_38885316_38902218_38902288_38904158_38904228_38906939_38907110_38911285_38911388_38915546
transcript_11782.known	chr12	-	3710	2	FSM	ENSMUSG00000047446.19	ENSMUST00000146905.2	3710	2	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGCGTTAGACTATCAT	NA	False	NA	0	True	AATAAA	-16	NA	40087428	40083289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_40086833_40087261
transcript_11783.known	chr12	-	1200	2	FSM	ENSMUSG00000047446.19	ENSMUST00000101472.4	1200	2	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCCTAGTGTTTTGTGCT	NA	False	NA	-7	True	AATAAA	-15	NA	40088024	40085820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_40086833_40087836
transcript_11785.nnic	chr12	-	1862	13	NNC	ENSMUSG00000001627.13	novel	3378	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	241.701032039354	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTGTGTAGTGAGCAGA	NA	False	NA	-3	True	AATAAA	-21	NA	40273184	40253129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_40253451_40253917_40254014_40254295_40254425_40256987_40257123_40262308_40262418_40262937_40263117_40263207_40263259_40263789_40263842_40263976_40264135_40266188_40266314_40267156_40267242_40267376_40267482_40272867
transcript_11787.known	chr12	-	3378	12	FSM	ENSMUSG00000001627.13	ENSMUST00000001672.12	3378	12	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_11	48.4295518005619	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTGGGAGGTTTGCTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	40273188	40251565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_40253451_40253917_40254014_40254295_40254425_40256987_40257123_40262308_40262418_40262937_40263117_40263207_40263259_40263976_40264135_40266188_40266314_40267156_40267242_40267376_40267482_40272867
transcript_11792.known	chr12	-	2438	13	FSM	ENSMUSG00000055917.16	ENSMUST00000069692.10	2438	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_11	159.233493824495	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACCATTTTTACTTCTTC	NA	False	NA	NA	False	NA	NA	NA	40495773	40365044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_40365903_40367089_40367265_40368533_40368577_40370600_40370698_40372528_40372597_40378673_40378807_40379483_40379595_40385282_40385375_40413132_40413216_40414080_40414170_40428671_40428874_40460574_40460953_40495664
transcript_11794.known	chr12	-	2188	12	FSM	ENSMUSG00000055917.16	ENSMUST00000069637.15	2188	12	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_6	45.6703965821071	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACCATTTTTACTTCTTC	NA	False	NA	NA	False	NA	NA	NA	40495901	40365044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_40365903_40367089_40367265_40368533_40368577_40370600_40370698_40372528_40372597_40378673_40378807_40379483_40379595_40385282_40385375_40413132_40413216_40414080_40414170_40428671_40428874_40495664
transcript_1180.known	chr1	-	711	2	FSM	ENSMUSG00000087213.3	ENSMUST00000150749.2	711	2	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	0	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAACAGTGCTACCTATGT	7927	False	NA	-16	True	AATAAA	-21	NA	64729818	64719029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_64719545_64729622
transcript_11801.nic	chr12	-	1100	8	ISM	ENSMUSG00000055917.16	ENSMUST00000069637.15	2188	12	102	7297	-26	2132	5prime_fragment	FALSE	canonical	3	359	junction_2	44.603010788831	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACTAAAGATACTTTTGGG	NA	False	NA	NA	False	AATAAA	-20	NA	40495799	40372341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_40372597_40378673_40378807_40379483_40379595_40385282_40385375_40413132_40413216_40414080_40414170_40428671_40428874_40495664
transcript_11805.known	chr12	+	347	4	FSM	ENSMUSG00000056899.11	ENSMUST00000140790.2	347	4	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	32.8667342798493	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTACTGTATTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	41074125	41160956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_41074145_41074559_41074633_41118308_41118446_41160838
transcript_11806.known	chr12	+	669	3	FSM	ENSMUSG00000056899.11	ENSMUST00000153184.8	669	3	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	38	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAGCCCAGGCAACACAA	NA	False	NA	NA	False	NA	NA	NA	41074124	41118884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_41074145_41074559_41074633_41118308
transcript_11807.known	chr12	+	1147	7	FSM	ENSMUSG00000056899.11	ENSMUST00000132121.8	1147	7	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	24.8310960960916	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTTGTTTGGGTGTTTAA	NA	False	NA	NA	False	AATAAA	-16	NA	41074088	42002371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_41074145_41074559_41074633_41118308_41118446_41160838_41160943_41675546_41675613_41750437_41750541_42001763
transcript_11808.known	chr12	-	2461	3	FSM	ENSMUSG00000014905.5	ENSMUST00000015049.5	2461	3	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	7	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGACGTGCTTGGAATGAT	NA	False	NA	NA	False	AATAAA	-16	NA	44257109	44252341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_44254189_44254869_44255097_44256722
transcript_1181.known	chr1	-	1505	1	FSM	ENSMUSG00000087213.3	ENSMUST00000186325.2	1505	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7958	False	NA	NA	False	NA	NA	NA	64729787	64728282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_64728300_64729800
transcript_11810.known	chr12	+	13507	10	FSM	ENSMUSG00000036257.16	ENSMUST00000043082.16	13507	10	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_3	27.4419701988589	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGCTCCCTGAAGCCATA	NA	False	NA	NA	False	NA	NA	NA	44315930	44369315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_44316085_44329360_44330488_44330575_44330726_44334953_44335106_44337348_44337444_44342680_44342853_44346016_44346075_44351693_44351889_44354701_44354898_44358107
transcript_11819.nnic	chr12	-	1553	7	NNC	ENSMUSG00000046314.17	novel	4553	6	NA	NA	-179	-2738	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	8.43932593411478	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTACTCTCCTAGTCCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	45121280	44902008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_44902471_44902516_44902661_44908007_44908166_44948656_44948823_44949642_44949774_45066249_45066439_45120977
transcript_1182.known	chr1	-	8562	8	FSM	ENSMUSG00000051344.14	ENSMUST00000097713.2	8562	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	6.03391773769796	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTCTCATATCAGCTTT	NA	False	NA	-5	True	AATAAA	-15	NA	64995983	64828279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_64834374_64859094_64859253_64900345_64900410_64922287_64922482_64931910_64932057_64960708_64961642_64976855_64977699_64995853
transcript_11820.known	chr12	-	4553	6	FSM	ENSMUSG00000046314.17	ENSMUST00000053768.14	4553	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	7.73563184232549	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTTTCTCTCCTTTAT	NA	False	NA	NA	False	ATTAAA	-21	NA	45121492	44899266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_44902661_44908007_44908166_44948656_44948823_44949642_44949774_45066249_45066439_45120977
transcript_11823.known	chr12	-	3653	19	FSM	ENSMUSG00000002688.9	ENSMUST00000002765.9	3653	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	5.99897110519693	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGTGTCATACTAATCAA	NA	False	NA	-4	True	AATAAA	-14	NA	50695881	50388013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_50389004_50389836_50389923_50411294_50411563_50412396_50412496_50413084_50413247_50430182_50430290_50431925_50431999_50433998_50434052_50435035_50435316_50436692_50436771_50438108_50438233_50439617_50439823_50441381_50441460_50441612_50441824_50466635_50466660_50472221_50472383_50474885_50475018_50536685_50536825_50695498
transcript_11824.known	chr12	+	2926	16	FSM	ENSMUSG00000035293.14	ENSMUST00000119211.8	2926	16	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_11	51.696120636745	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATCTCATAAATCAGAGAT	NA	False	NA	NA	False	AATAAA	-18	NA	51395070	51420050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_51395228_51398187_51398229_51400386_51400485_51400582_51400685_51402663_51402789_51403809_51403976_51406524_51406632_51407713_51407831_51409968_51410094_51410199_51410330_51410734_51410804_51412037_51412343_51414557_51414740_51415828_51416002_51418342_51418534_51419212
transcript_1183.known	chr1	-	654	1	FSM	ENSMUSG00000084416.4	ENSMUST00000120360.2	654	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12703	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGCTCCAATAAACCTCAC	NA	False	NA	NA	False	NA	NA	NA	65033763	65033109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_65033100_65033800
transcript_11831.known	chr12	+	2096	25	FSM	ENSMUSG00000020952.11	ENSMUST00000021335.7	2096	25	0	0	0	0	multi-exon	FALSE	canonical	3	358	junction_5	42.0133700610757	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTTATTCTTGTTTGAA	NA	False	NA	15	True	AATAAA	-15	NA	51424362	51496884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462297_51462380_51469689_51469787_51472820_51472892_51474647_51474728_51478270_51478334_51480013_51480090_51486065_51486120_51489313_51489367_51491766_51491801_51492453_51492520_51494354_51494424_51496689
transcript_11835.known	chr12	+	2749	14	FSM	ENSMUSG00000020952.11	ENSMUST00000219434.2	2749	14	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_13	120.151925523899	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAACATTTTTTAAGATT	NA	False	NA	NA	False	ATTAAA	-15	NA	51424362	51463998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_51424420_51430887_51430959_51433832_51433922_51436064_51436156_51437088_51437212_51438965_51439054_51440603_51440694_51443462_51443519_51444475_51444562_51446781_51446882_51459286_51459427_51460877_51460969_51461632_51461707_51462405
transcript_11838.known	chr12	+	2456	12	FSM	ENSMUSG00000020953.18	ENSMUST00000085412.7	2456	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	2.34608870919344	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCCTATTTATTAACACTAG	NA	False	NA	NA	False	AATAAA	-17	NA	51640139	51652544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_51640189_51640387_51640441_51640520_51640575_51642117_51642275_51643226_51643361_51643797_51643861_51644810_51644856_51644934_51645083_51648596_51648701_51649429_51649657_51649978_51650496_51651639
transcript_1184.known	chr1	-	631	3	FSM	ENSMUSG00000070870.7	ENSMUST00000087359.6	631	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	7	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGTTCTCTGTTCCTTTC	NA	False	NA	NA	False	AATAAA	-28	NA	65090308	65087712	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_65088056_65089928_65090172_65090263
transcript_11840.known	chr12	-	8988	43	FSM	ENSMUSG00000035247.17	ENSMUST00000042052.9	8988	43	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_19	32.7528018915334	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAACCTGTGTCGTGTTAC	NA	False	NA	-5	True	ATTAAA	-14	NA	51876319	51790504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_51791442_51791548_51791694_51792163_51792315_51792876_51792971_51793055_51793135_51795186_51795795_51797103_51797242_51798638_51798841_51800523_51800652_51800825_51800912_51800997_51801206_51801703_51801887_51803829_51803885_51806001_51806225_51807796_51807954_51809206_51809330_51810803_51810938_51814338_51814561_51815311_51816149_51819056_51819234_51819321_51819489_51820609_51820934_51821433_51821574_51823278_51823414_51829264_51829371_51830964_51831060_51832591_51832739_51834627_51834763_51836954_51837032_51837134_51837399_51838002_51838226_51841196_51841368_51841521_51841661_51844619_51844795_51845436_51845552_51847497_51847597_51847678_51847756_51848946_51849218_51849317_51849600_51850451_51850680_51853144_51853380_51874134_51874297_51875985
transcript_11841.known	chr12	+	1035	6	FSM	ENSMUSG00000020955.10	ENSMUST00000021338.10	1035	6	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	14.8458748479165	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGTGACGTTTGAGTGAA	NA	False	NA	NA	False	AATAAA	-17	NA	51737819	51785715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_51738098_51763724_51763934_51767418_51767506_51769762_51769832_51777670_51777683_51785335
transcript_11843.nic	chr12	-	1952	11	ISM	ENSMUSG00000035181.7	ENSMUST00000218254.2	4111	13	-14	9270	10	-3116	5prime_fragment	FALSE	canonical	1	15	junction_10	12.1363091588835	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGAAAGGTTGCTGTTAGTG	NA	False	NA	NA	False	AATGAA	-18	NA	52018094	51992151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_51992316_51994537_51994789_51996714_51996871_51997711_51997968_51999269_51999428_52002162_52002338_52002903_52003054_52003861_52003971_52005635_52005848_52008215_52008428_52017985
transcript_11845.nnic	chr12	-	1270	4	NNC	ENSMUSG00000020956.15	novel	2564	3	NA	NA	-29	-1397	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_2	77.1895214535122	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACTCCAGTTTTTCTTAA	NA	False	NA	-1	True	AATAAA	-16	NA	52053313	52045686	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_52046657_52051079_52051154_52051661_52051732_52053157
transcript_11846.nnic	chr12	-	1383	3	NNC	ENSMUSG00000020956.15	novel	2564	3	NA	NA	-6	-1397	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	74	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACTCCAGTTTTTCTTAA	NA	False	NA	-1	True	AATAAA	-16	NA	52053290	52045686	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_52046657_52051661_52051732_52052947
transcript_11847.known	chr12	-	2564	3	FSM	ENSMUSG00000020956.15	ENSMUST00000021339.8	2564	3	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	5	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACTACAGCACTCTATG	NA	False	NA	NA	False	AATAAA	-21	NA	52053284	52044289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_52046657_52051661_52051732_52053157
transcript_11850.known	chr12	-	1012	4	FSM	ENSMUSG00000020956.15	ENSMUST00000085404.10	1012	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	82.5967446224258	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGCCATGTTTTCATCAGA	NA	False	NA	NA	False	ATTAAA	-11	NA	52053284	52035094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_52035639_52046385_52046657_52051661_52051732_52053157
transcript_11853.nnic	chr12	+	1304	12	NNC	ENSMUSG00000035142.19	novel	2987	11	NA	NA	-21	-1792	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_6	91.1117740574775	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGCTGGCTGCTCTATG	NA	False	NA	3	True	AATAAA	-12	NA	52144498	52357735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_52144675_52145135_52145284_52147249_52147285_52190751_52190843_52227874_52227915_52227999_52228091_52275655_52275744_52317821_52317916_52333120_52333207_52349463_52349585_52352580_52352664_52357484
transcript_11854.known	chr12	+	2987	11	FSM	ENSMUSG00000035142.19	ENSMUST00000040090.16	2987	11	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_4	16.265300489078	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGGATATCAATATACTTC	NA	False	NA	NA	False	NA	NA	NA	52144519	52359527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_52144675_52145135_52145284_52147249_52147285_52190751_52190843_52227874_52227915_52227999_52228091_52317821_52317916_52333120_52333207_52349463_52349585_52352580_52352664_52357484
transcript_11857.known	chr12	-	2662	5	FSM	ENSMUSG00000035105.6	ENSMUST00000039516.4	2662	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	5.24404424085076	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTTTGGTTCATTTCCAT	NA	False	NA	NA	False	NA	NA	NA	54250646	54225766	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_54227442_54228416_54228491_54230665_54230803_54232326_54232447_54249990
transcript_1186.known	chr1	-	690	2	FSM	ENSMUSG00000070870.7	ENSMUST00000161960.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACAGAGTTCTCTGTTCCT	NA	False	NA	NA	False	AATAAA	-25	NA	65090278	65087715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_65088056_65089928
transcript_11860.known	chr12	-	1346	2	FSM	ENSMUSG00000044408.8	ENSMUST00000056228.8	1346	2	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_1	0	377	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCTCTTTTATGGTTAA	NA	False	NA	NA	False	ATTAAA	-17	NA	54703358	54692176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_54693321_54703156
transcript_11861.known	chr12	-	2658	7	FSM	ENSMUSG00000054302.16	ENSMUST00000163433.8	2658	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	149.586559853781	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACATAAAATAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	54742669	54718439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_54718648_54718863_54720636_54725294_54725409_54732644_54732757_54738784_54738881_54739559_54739742_54742495
transcript_11862.nnic	chr12	-	1192	7	NNC	ENSMUSG00000054302.16	novel	2658	7	NA	NA	3	32	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	149.586559853781	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAGAATAGACTATATTT	NA	False	NA	NA	False	NA	NA	NA	54742679	54718407	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_54718632_54720355_54720636_54725294_54725409_54732644_54732757_54738784_54738881_54739559_54739742_54742495
transcript_11863.nnic	chr12	-	2700	7	NNC	ENSMUSG00000054302.16	novel	2658	7	NA	NA	3	32	at_least_one_novel_splicesite	TRUE	non_canonical	2	22	junction_1	141.534153710921	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTAAGAATAGACTATATTT	NA	False	NA	NA	False	NA	NA	NA	54742679	54718407	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_54718634_54718849_54720636_54725294_54725409_54732644_54732757_54738784_54738881_54739559_54739742_54742495
transcript_11865.nic	chr12	-	1060	6	NIC	ENSMUSG00000054302.16	novel	2658	7	NA	NA	3	-1	combination_of_known_junctions	FALSE	canonical	3	6	junction_4	158.463118737453	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAAGGAGTGGTTATCAA	NA	False	NA	-6	True	ATTAAA	-18	NA	54742679	54720251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_54720636_54725294_54725409_54732644_54732757_54738784_54738869_54739559_54739742_54742495
transcript_11866.known	chr12	-	4186	6	FSM	ENSMUSG00000054302.16	ENSMUST00000161592.8	4186	6	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_3	29.9973332148043	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATTAAGTCCTTTATTTG	NA	False	NA	NA	False	ATTAAA	-5	NA	54742666	54717124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_54720636_54725294_54725409_54732644_54732757_54738784_54738881_54739559_54739742_54742495
transcript_11867.known	chr12	-	886	5	FSM	ENSMUSG00000054302.16	ENSMUST00000110713.10	886	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	171.146136386423	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGGAGTGGTTATCAAC	NA	False	NA	-5	True	ATTAAA	-19	NA	54742606	54720250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_54720636_54732644_54732757_54738784_54738881_54739559_54739742_54742495
transcript_11870.known	chr12	-	590	3	FSM	ENSMUSG00000054302.16	ENSMUST00000067272.9	590	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	216.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATGAAAAGGAGTGGTTA	NA	False	NA	-10	True	ATTAAA	-14	NA	54742682	54720255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_54720576_54739658_54739742_54742495
transcript_11871.known	chr12	+	164	1	FSM	ENSMUSG00000118751.1	ENSMUST00000240287.1	164	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTCTGTGGTTGCAAAGT	NA	False	NA	NA	False	NA	NA	NA	54776379	54776543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_54776400_54776500
transcript_11872.known	chr12	-	164	1	FSM	ENSMUSG00000119670.1	ENSMUST00000240177.1	164	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGTTGGTGCAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	54781496	54781332	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_54781300_54781500
transcript_11873.known	chr12	-	1928	14	FSM	ENSMUSG00000005656.10	ENSMUST00000005798.9	1928	14	0	0	0	0	multi-exon	FALSE	canonical	3	824	junction_2	126.191832929968	630	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTGAAGGTCTTTTCT	NA	False	NA	-10	True	AATAAA	-20	NA	54842488	54793133	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_54793845_54798566_54798653_54798725_54798886_54801074_54801162_54803820_54803861_54807183_54807260_54810404_54810511_54812368_54812465_54814803_54814928_54817503_54817626_54830187_54830299_54830799_54830905_54842238_54842287_54842432
transcript_11874.known	chr12	-	2940	4	FSM	ENSMUSG00000062929.9	ENSMUST00000078124.8	2940	4	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	55.9603033904888	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTAAAGCTGTTGAGATG	NA	False	NA	-11	True	AATAAA	-12	NA	54909662	54905601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_54908023_54908121_54908199_54908310_54908619_54909528
transcript_11875.known	chr12	-	2726	4	FSM	ENSMUSG00000062929.9	ENSMUST00000223450.2	2726	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	134.037308239162	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGAGATGTGTTTACT	NA	False	NA	-3	True	AATAAA	-20	NA	54909583	54905593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_54908023_54908121_54908199_54908453_54908619_54909528
transcript_11876.known	chr12	-	1128	4	FSM	ENSMUSG00000062929.9	ENSMUST00000221374.2	1128	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	123.758725842755	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAATGTTGCCTTGTTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	54909583	54907080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_54908023_54908121_54908199_54908564_54908619_54909528
transcript_1188.known	chr1	-	613	3	FSM	ENSMUSG00000067299.12	ENSMUST00000045028.15	613	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	4.5	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAAAATATTTTCTGTGT	7620	False	NA	-34	True	NA	NA	NA	65102611	65101030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_65101342_65102217_65102461_65102552
transcript_11880.nic	chr12	-	1531	8	NIC	ENSMUSG00000062198.6	novel	1105	8	NA	NA	-359	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_4	59.7586984531652	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGAAATGTTTTGTT	NA	False	NA	-14	True	AATAAA	-25	NA	55127254	55092460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106159_55106364_55107839_55107979_55109772_55109895_55126765
transcript_11881.known	chr12	-	1105	8	FSM	ENSMUSG00000062198.6	ENSMUST00000021406.6	1105	8	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_4	27.3898536256157	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGCTCTTTTATTTGT	NA	False	NA	1	True	AATAAA	-40	NA	55126895	55092445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55126765
transcript_11882.nnic	chr12	-	1133	8	Fusion	ENSMUSG00000062198.6_ENSMUSG00000112022.3	novel	1105	8	NA	NA	-98	0	multi-exon	FALSE	canonical	3	143	junction_4	24.4423520027957	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATCTGAAATGTTTTGTT	NA	False	NA	-14	True	AATAAA	-25	NA	55201779	55092460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr12_-_55092729_55095671_55095763_55100085_55100193_55104026_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55201606
transcript_1189.known	chr1	-	783	3	FSM	ENSMUSG00000025952.16	ENSMUST00000027089.15	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTTATTCTTTCATTG	688	False	NA	6	True	AATAAA	-32	NA	65112848	65110683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_65111031_65112320_65112564_65112655
transcript_11891.nic	chr12	-	1747	5	ISM	ENSMUSG00000062198.6	ENSMUST00000222572.2	798	6	-64	2949	-58	-2505	5prime_fragment	FALSE	canonical	3	37	junction_1	70.9449610613749	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGTAGAGATA	NA	False	NA	NA	False	NA	NA	NA	55126953	55103043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_55104138_55106159_55106364_55107839_55107979_55109772_55109895_55126765
transcript_11893.known	chr12	-	4110	5	FSM	ENSMUSG00000062198.6	ENSMUST00000156852.2	4110	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	29.9864552756741	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAGAAATTAACTA	NA	False	NA	NA	False	NA	NA	NA	55126893	55100538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_55104138_55106241_55106364_55107839_55107979_55109772_55109895_55126765
transcript_11896.known	chr12	+	4498	16	FSM	ENSMUSG00000073079.7	ENSMUST00000220578.2	4498	16	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_1	133.408578767967	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTGGATGAAAGTCATGT	2576	False	NA	NA	False	NA	NA	NA	55127046	55162152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_55127522_55135954_55136065_55136920_55137013_55138033_55138119_55142599_55142705_55143893_55143961_55144040_55144099_55146697_55146849_55148124_55148274_55148607_55148709_55149252_55149340_55151975_55152050_55152401_55152511_55155286_55155458_55157870_55157967_55159584
transcript_11899.known	chr12	+	3922	5	FSM	ENSMUSG00000095595.3	ENSMUST00000177768.3	3922	5	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_4	12.794041581924	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCTGCAGAGTTCTC	NA	False	NA	NA	False	NA	NA	NA	55171253	55188889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_55171508_55177400_55177575_55182452_55182520_55183902_55184001_55185560
transcript_11904.known	chr12	-	850	8	FSM	ENSMUSG00000112022.3	ENSMUST00000219562.3	850	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_7	67.4325059384779	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	55201681	55188893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_55189069_55190157_55190218_55192016_55192155_55195887_55196025_55196405_55196482_55196565_55196622_55197660_55197794_55201606
transcript_11906.known	chr12	+	3646	16	FSM	ENSMUSG00000112449.2	ENSMUST00000110708.4	3646	16	0	0	0	0	multi-exon	FALSE	canonical	3	704	junction_7	105.372650889856	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATTCTTAGAAAAGTATT	2354	False	NA	NA	False	NA	NA	NA	55201888	55236358	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_55202366_55211014_55211125_55211980_55212073_55213093_55213179_55217659_55217765_55218953_55219021_55219100_55219159_55221757_55221909_55223184_55223334_55223667_55223769_55224312_55224400_55227035_55227110_55227461_55227571_55230346_55230518_55232930_55233027_55234644
transcript_11909.known	chr12	+	3863	5	FSM	ENSMUSG00000094103.3	ENSMUST00000177978.3	3863	5	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_4	12.794041581924	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCTGCAGAGTTCTC	NA	False	NA	NA	False	NA	NA	NA	55246376	55263953	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_55246572_55252464_55252639_55257516_55257584_55258966_55259065_55260624
transcript_1191.nnic	chr1	-	872	4	NNC	ENSMUSG00000044816.11	novel	1156	8	NA	NA	12850	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_3	4.02768199119819	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACTGGATGTCAGCTCTT	9969	False	NA	NA	False	AATAAA	-11	NA	65149423	65144443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_65144910_65148620_65148736_65149035_65149124_65149220
transcript_11915.known	chr12	-	847	8	FSM	ENSMUSG00000112690.3	ENSMUST00000220144.3	847	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_7	67.4325059384779	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTTTTTTTTTTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	55276745	55263960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_55264133_55265221_55265282_55267080_55267219_55270951_55271089_55271469_55271546_55271629_55271686_55272724_55272858_55276670
transcript_11917.known	chr12	+	3642	16	FSM	ENSMUSG00000079108.7	ENSMUST00000218879.2	3642	16	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_11	270.209005524736	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCATTCTTAGAAAAGTATT	NA	False	NA	NA	False	NA	NA	NA	55276952	55310621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_55277430_55286078_55286189_55287044_55287137_55288157_55288243_55292723_55292829_55294017_55294085_55294164_55294223_55296788_55296940_55298428_55298578_55298911_55299013_55299556_55299644_55302323_55302398_55302752_55302862_55304209_55304381_55307187_55307284_55308911
transcript_11921.nnic	chr12	+	1023	5	NNC	ENSMUSG00000079108.7	novel	3642	16	NA	NA	-62	-20993	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	390.15149301265	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGTGTCTGTGTCTG	NA	False	NA	NA	False	AATAAA	-24	NA	55276890	55288812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_55277430_55286078_55286189_55287044_55287137_55288157_55288243_55288615
transcript_11922.nic	chr12	+	1118	4	ISM	ENSMUSG00000079108.7	ENSMUST00000218879.2	3642	16	216	21809	216	-20993	5prime_fragment	FALSE	canonical	3	805	junction_1	77.2628989590447	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGTGTCTGTGTCTG	NA	False	NA	NA	False	AATAAA	-24	NA	55277168	55288812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_55277430_55286078_55286189_55287044_55287137_55288157
transcript_11927.known	chr12	-	4216	14	FSM	ENSMUSG00000021022.10	ENSMUST00000021410.10	4216	14	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_13	62.3614203298973	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCCCTGGGCTTAGGATC	NA	False	NA	NA	False	TATAAA	-17	NA	55349783	55325775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378_55349581_55349699
transcript_11928.nnic	chr12	-	1908	14	NNC	ENSMUSG00000021022.10	novel	4216	14	NA	NA	-230	-2520	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_13	69.7240545793362	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACACAGCAAATATCTTGC	NA	False	NA	NA	False	AATAAA	-19	NA	55350013	55328295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_55328591_55329698_55329759_55331561_55331700_55334705_55334843_55335223_55335300_55335375_55335432_55336444_55336578_55339288_55339360_55340566_55340665_55344562_55344676_55345195_55345301_55345678_55345807_55349378_55349581_55349717
transcript_11934.known	chr12	+	3122	7	FSM	ENSMUSG00000021023.15	ENSMUST00000021411.15	3122	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_3	136.205726751851	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTTAGTTGGTTTTGCA	NA	False	NA	19	True	AATAAA	-20	NA	55349421	55429281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_55351670_55353123_55353172_55355521_55355655_55384944_55385053_55423898_55424048_55426066_55426263_55429041
transcript_11938.known	chr12	+	2250	8	FSM	ENSMUSG00000021023.15	ENSMUST00000184766.8	2250	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	146.839771068151	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCGTCAAACTCACTTTT	NA	False	NA	36	True	AATAAA	-37	NA	55350027	55429298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_55350118_55350400_55351670_55353123_55353172_55355521_55355655_55384944_55385053_55423898_55424048_55426066_55426263_55429041
transcript_11940.known	chr12	-	523	1	FSM	ENSMUSG00000059033.8	ENSMUST00000161190.2	523	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTCTAGACACAGAGACCC	NA	False	NA	NA	False	NA	NA	NA	55443014	55442491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_55442500_55443000
transcript_11941.known	chr12	+	1042	7	FSM	ENSMUSG00000021024.15	ENSMUST00000021412.9	1042	7	0	0	0	0	multi-exon	FALSE	canonical	3	2423	junction_5	124.008960249743	2609	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCGGTGCATCCTGTCTTT	NA	False	NA	16	True	AATAAA	-17	NA	55445559	55465239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_55445777_55454253_55454349_55454786_55454869_55456911_55457068_55458971_55459151_55461188_55461284_55465021
transcript_11942.known	chr12	-	1578	6	FSM	ENSMUSG00000021025.9	ENSMUST00000021413.9	1578	6	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_5	20.9914268214431	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATTGTCCCGCTCGTTTGC	NA	False	NA	-2	True	ATTAAA	-17	NA	55539432	55536194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_55536755_55537190_55537452_55537555_55537645_55537904_55538116_55538454_55538564_55539084
transcript_11947.known	chr12	+	2609	10	FSM	ENSMUSG00000012076.9	ENSMUST00000059250.8	2609	10	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_3	20.0277585143997	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTAGTGTTGTGTGTTAC	NA	False	NA	2	True	AATAAA	-20	NA	55883108	55916521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_55883431_55888355_55888447_55891180_55891309_55892068_55892149_55906875_55906973_55907872_55907957_55908174_55908240_55909918_55909959_55912735_55912863_55914946
transcript_11951.known	chr12	+	481	2	FSM	ENSMUSG00000012076.9	ENSMUST00000218779.2	481	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTTACATATAATCAATAAA	NA	False	NA	NA	False	NA	NA	NA	55883154	55886482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_55883431_55886277
transcript_11952.known	chr12	-	1512	9	FSM	ENSMUSG00000021028.9	ENSMUST00000021416.9	1512	9	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_1	38.7193427113633	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATGTCTTTTTTACTGT	NA	False	NA	NA	False	AATAAA	-33	NA	56392679	56375087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_56375585_56377013_56377053_56382582_56382681_56384087_56384241_56384548_56384615_56386985_56387083_56387169_56387389_56389020_56389141_56392456
transcript_11960.known	chr12	+	2117	11	FSM	ENSMUSG00000047022.19	ENSMUST00000123498.8	2117	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_10	14.6659469520382	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTTGGTATTTTTTAAT	NA	False	NA	NA	False	AATAAA	-31	NA	57277231	57543985	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738_57503970_57543243
transcript_11963.known	chr12	+	1424	10	FSM	ENSMUSG00000047022.19	ENSMUST00000145003.8	1424	10	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_9	13.9602610609146	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAGGAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57277231	57504018	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912_57411021_57461101_57461197_57503738
transcript_11967.nic	chr12	+	1321	8	ISM	ENSMUSG00000047022.19	ENSMUST00000145003.8	1424	10	42	92684	-3	-2045	5prime_fragment	FALSE	canonical	3	52	junction_6	11.4196393666922	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAAATCATCAGCCGTTT	NA	False	NA	NA	False	AATAAA	-22	NA	57277273	57411334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912
transcript_11968.known	chr12	+	3737	7	FSM	ENSMUSG00000047022.19	ENSMUST00000153439.2	3737	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	23.4591844132172	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGAGTTCATAATTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	57277276	57413960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_57277398_57352796_57352924_57354144_57354251_57372309_57372440_57378781_57378816_57379074_57379246_57410912
transcript_11969.known	chr12	+	1168	5	FSM	ENSMUSG00000047022.19	ENSMUST00000148418.8	1168	5	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	7.69740215917033	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACATTGTATGTATTTCTT	NA	False	NA	NA	False	NA	NA	NA	57277221	57372861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_57277398_57350130_57350338_57352796_57352924_57354144_57354251_57372309
transcript_11971.known	chr12	+	1720	2	FSM	ENSMUSG00000079104.5	ENSMUST00000139049.2	1720	2	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAATCCATTACTGTCTT	NA	False	NA	NA	False	NA	NA	NA	57277197	57286668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_57277398_57285148
transcript_11974.known	chr12	-	4109	20	FSM	ENSMUSG00000020986.14	ENSMUST00000021375.12	4109	20	0	0	0	0	multi-exon	FALSE	canonical	3	521	junction_10	53.3728846882441	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTCAGCTATGCTGAAGA	2678	False	NA	-27	True	NA	NA	NA	59058803	59005168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_59006873_59013765_59013832_59015598_59015755_59018025_59018113_59019666_59019829_59021367_59021446_59025247_59025402_59029353_59029461_59031917_59032008_59032876_59032958_59036135_59036260_59037758_59037875_59038910_59039070_59043921_59044067_59045044_59045125_59048604_59048842_59051275_59051363_59052044_59052103_59053775_59054022_59058631
transcript_1198.known	chr1	-	2283	9	FSM	ENSMUSG00000025950.17	ENSMUST00000169032.8	2283	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_8	288.761904516506	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGTTTATTATGTGTTTT	NA	False	NA	-8	True	ATTAAA	-26	NA	65225638	65197776	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65225463
transcript_11981.known	chr12	+	1588	10	FSM	ENSMUSG00000060121.16	ENSMUST00000021379.8	1588	10	0	0	0	0	multi-exon	FALSE	canonical	1	279	junction_3	161.403565980158	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTTAGTTTAATTTCAC	NA	False	NA	NA	False	TTTAAA	-6	NA	59060178	59075256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074522
transcript_11983.nnic	chr12	+	1015	10	NNC	ENSMUSG00000060121.16	novel	1588	10	NA	NA	-8	59	at_least_one_novel_splicesite	FALSE	canonical	1	34	junction_9	268.690009095341	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTGAAATGTCTGTGAA	NA	False	NA	7	True	AATATA	-18	NA	59060170	59074732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_59060400_59060755_59060841_59063651_59063742_59063953_59064014_59064797_59064912_59067174_59067220_59068453_59068523_59071788_59071900_59073640_59073700_59074579
transcript_1199.known	chr1	-	2302	9	FSM	ENSMUSG00000025950.17	ENSMUST00000097709.11	2302	9	0	0	0	0	multi-exon	FALSE	canonical	3	773	junction_5	91.7393556495793	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTATTATGTGTTTTTA	NA	False	NA	-6	True	ATTAAA	-28	NA	65218340	65197774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_65198715_65200208_65200372_65200958_65201100_65204258_65204411_65205265_65205444_65207657_65207764_65210117_65210410_65214389_65214528_65218148
transcript_12.known	ERCC-00039	+	724	1	FSM	ERCC-00039A	DQ883656	724	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	724	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00039_+_0_700
transcript_120.known	SIRV4	-	626	2	FSM	SIRV4A	SIRV405	626	2	0	0	0	0	multi-exon	FALSE	canonical	3	7498	junction_1	0	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTCTCTTTTCAGCAAG	NA	False	NA	NA	False	NA	NA	NA	13937	8629	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV4_-_8991_13672
transcript_12007.known	chr12	-	1486	7	FSM	ENSMUSG00000020993.10	ENSMUST00000217660.2	1486	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	143.962668772151	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGAAAGTTTATTTTAAT	NA	False	NA	-5	True	NA	NA	NA	59108258	59089913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_59090463_59091038_59091133_59094908_59094993_59097053_59097172_59098426_59098495_59106041_59106298_59107941
transcript_12009.known	chr12	-	1255	6	FSM	ENSMUSG00000020993.10	ENSMUST00000021380.10	1255	6	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_5	16.4146276229466	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCATTAATTTAATCA	NA	False	NA	31	True	AATAGA	-14	NA	59108247	59089877	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_59090463_59091038_59091133_59094908_59094993_59097053_59097172_59098426_59098495_59107941
transcript_1201.nic	chr1	+	1775	9	NIC	ENSMUSG00000025949.17	novel	1790	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_8	43.4940728720592	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATGATAAAAA	NA	False	NA	NA	False	NA	NA	NA	65225841	65248558	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_65225993_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65247642_65247730_65247941
transcript_12010.known	chr12	-	737	6	FSM	ENSMUSG00000020993.10	ENSMUST00000218799.2	737	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	118.145672794225	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTGACTGACCTATTC	NA	False	NA	NA	False	NA	NA	NA	59108130	59090291	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_59090463_59091038_59091133_59094908_59094993_59097053_59097185_59098426_59098495_59107941
transcript_12011.known	chr12	-	665	5	FSM	ENSMUSG00000020993.10	ENSMUST00000218936.2	665	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	126.52149026944	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGGTCACCTCAGTAAAG	NA	False	NA	NA	False	NA	NA	NA	59108207	59093856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_59093986_59094908_59094993_59097053_59097172_59098426_59098495_59107941
transcript_12012.known	chr12	-	785	4	FSM	ENSMUSG00000020993.10	ENSMUST00000218686.2	785	4	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_3	140.478547195727	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGTTCAAATGACCAAAAT	NA	False	NA	NA	False	ATTAAA	-25	NA	59108204	59090118	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_59090463_59091038_59091133_59094908_59094993_59107941
transcript_12015.known	chr12	+	3485	9	FSM	ENSMUSG00000020994.6	ENSMUST00000021381.6	3485	9	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_8	34.8308412186671	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACAAATATCTTCATTTA	NA	False	NA	9	True	ATTAAA	-43	NA	59113669	59120784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_59113902_59114564_59114637_59115070_59115140_59115511_59115585_59115687_59115783_59115901_59115978_59116927_59117084_59117164_59117304_59118211
transcript_1202.known	chr1	+	1303	8	FSM	ENSMUSG00000025949.17	ENSMUST00000189925.7	1303	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	38.9814189121967	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAAAAATCCTTCAA	NA	False	NA	NA	False	NA	NA	NA	65225854	65245333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_65225938_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65245033
transcript_12022.known	chr12	+	2649	25	FSM	ENSMUSG00000021000.18	ENSMUST00000176322.8	2649	25	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	130.239736213219	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATGGGTAAATTATTTC	NA	False	NA	4	True	AATAAA	-18	NA	59178252	59236738	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_59178391_59182849_59182982_59184366_59184389_59184483_59184573_59191484_59191557_59193121_59193149_59193632_59193744_59194637_59194710_59196249_59196355_59201141_59201265_59205038_59205154_59206376_59206424_59206961_59207053_59209666_59209806_59215719_59215822_59217043_59217105_59217742_59217779_59219310_59219379_59220891_59220975_59223116_59223246_59226635_59226795_59230972_59231090_59232514_59232574_59235096_59235332_59236421
transcript_12023.known	chr12	+	4434	24	FSM	ENSMUSG00000021000.18	ENSMUST00000176464.8	4434	24	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_5	45.1017752679996	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCGAAGGCCAGGGAAAG	NA	False	NA	NA	False	NA	NA	NA	59178071	59238369	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_59178391_59182849_59182982_59184366_59184389_59184483_59184573_59191484_59191557_59193632_59193744_59194637_59194710_59196249_59196355_59201141_59201265_59205038_59205154_59206376_59206424_59206961_59207053_59209666_59209806_59215719_59215822_59217043_59217105_59217742_59217779_59219310_59219379_59220891_59220975_59223116_59223246_59226635_59226795_59230972_59231090_59232514_59232574_59235096_59235332_59236421
transcript_12028.known	chr12	+	598	3	FSM	ENSMUSG00000047227.6	ENSMUST00000220928.2	598	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	12.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGTACTTTTTATTTA	208	False	NA	NA	False	AATAAA	-13	NA	64969512	64971366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_64969543_64970280_64970416_64970933
transcript_1203.nic	chr1	+	1977	8	NIC	ENSMUSG00000025949.17	novel	4266	13	NA	NA	-18	614	combination_of_known_junctions	FALSE	canonical	3	56	junction_1	21.9795823621907	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGGAGTCAGGAAATTCC	NA	False	NA	NA	False	AATAAA	-20	NA	65225823	65256035	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_65225938_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747_65244838_65255092
transcript_12031.known	chr12	-	6459	5	FSM	ENSMUSG00000020948.10	ENSMUST00000222508.2	6459	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	2.9474565306379	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTATCATGTAATCATTA	NA	False	NA	-4	True	NA	NA	NA	65012308	64985606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_64990388_64996787_64996997_64998149_64998594_65003612_65004512_65012182
transcript_12033.known	chr12	+	6386	21	FSM	ENSMUSG00000035614.12	ENSMUST00000223166.2	6386	21	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	35.8941499411812	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTGTGACAGGTGTCCTA	NA	False	NA	9	True	AATAAA	-17	NA	65012713	65069347	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_65014803_65023468_65023626_65024942_65025078_65027356_65027654_65029219_65029483_65030101_65030341_65033166_65033265_65037714_65037865_65039318_65039415_65042279_65042456_65043665_65043820_65049381_65049536_65053092_65053199_65053648_65053885_65055323_65055483_65057886_65058014_65059608_65059728_65063254_65063445_65065905_65066126_65067087_65067175_65068213
transcript_12036.known	chr12	+	4069	14	FSM	ENSMUSG00000035597.20	ENSMUST00000120580.8	4069	14	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_3	84.525476709793	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCCTGTGGTCTCCTTC	7507	False	NA	8	True	AATAAA	-16	NA	65083106	65110160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_65083243_65089234_65089582_65090005_65090132_65090779_65090899_65094886_65095055_65100059_65100226_65100744_65100853_65101929_65102095_65102411_65102539_65103024_65103294_65104502_65104688_65106644_65106720_65107924_65108040_65108197
transcript_12041.known	chr12	-	981	7	FSM	ENSMUSG00000020949.10	ENSMUST00000221166.2	981	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	3855.04114764032	2621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGTGTGTTCTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	65120736	65109197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_65109515_65110451_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116720_65116827_65120588
transcript_12043.known	chr12	-	1233	6	FSM	ENSMUSG00000020949.10	ENSMUST00000221710.2	1233	6	0	0	0	0	multi-exon	FALSE	canonical	3	9942	junction_1	352.092828668804	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCAGCTGTCCTCAGGTCC	NA	False	NA	NA	False	CATAAA	-35	NA	65120736	65109878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_65110550_65112510_65112579_65113415_65113552_65115775_65115884_65116724_65116827_65120588
transcript_12046.known	chr12	-	654	5	FSM	ENSMUSG00000020949.10	ENSMUST00000220983.2	654	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	4405.18495638946	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACCTTGTAAACTAGAAGA	NA	False	NA	-59	True	NA	NA	NA	65120674	65109254	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_65109515_65110451_65110550_65115775_65115884_65116724_65116827_65120588
transcript_12049.known	chr12	+	1682	7	FSM	ENSMUSG00000055884.9	ENSMUST00000223051.2	1682	7	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	45.9737243796207	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATCAGTAGTAGTTACTG	9280	False	NA	NA	False	AATAAA	-12	NA	65122376	65140858	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_65122952_65123815_65123989_65129805_65129884_65134931_65135091_65137692_65137825_65139129_65139263_65140426
transcript_12051.known	chr12	-	4017	14	FSM	ENSMUSG00000047534.18	ENSMUST00000052201.9	4017	14	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_12	54.2140181439599	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTGGGTTTGTT	NA	False	NA	-5	True	AATAAA	-18	NA	65219354	65179507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
transcript_12053.nic	chr12	-	3514	13	NIC	ENSMUSG00000047534.18	novel	4017	14	NA	NA	-99	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_12	86.8969296862029	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTGGGTTTGTT	NA	False	NA	-5	True	AATAAA	-18	NA	65219477	65179507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65219222
transcript_12056.nic	chr12	-	2857	13	NIC	ENSMUSG00000047534.18	novel	4017	14	NA	NA	-9	-567	combination_of_known_junctions	FALSE	canonical	3	78	junction_12	86.8969296862029	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAAGCCTGTTTTCTTTAG	NA	False	NA	1	True	ATTAAA	-29	NA	65219387	65180074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_65180400_65180577_65180633_65183523_65183624_65185418_65185571_65187506_65187665_65189996_65190167_65195495_65196325_65199461_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65219222
transcript_1206.known	chr1	+	1044	7	FSM	ENSMUSG00000025949.17	ENSMUST00000185317.7	1044	7	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	20.9257948209593	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATTTTTTATTTATGTC	NA	False	NA	NA	False	AATAAA	-13	NA	65225841	65244865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_65225938_65229477_65229659_65231303_65231454_65234814_65234934_65235770_65235943_65241874_65242083_65244747
transcript_12062.nic	chr12	-	1625	7	ISM	ENSMUSG00000047534.18	ENSMUST00000052201.9	4017	14	-49	20039	-25	0	5prime_fragment	FALSE	canonical	3	216	junction_5	67.8298524905435	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAAAAAAAGATGCAGA	NA	False	NA	NA	False	AAGAAA	-9	NA	65219403	65199546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65208176_65208803_65219222
transcript_12064.known	chr12	-	969	6	FSM	ENSMUSG00000047534.18	ENSMUST00000221296.2	969	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	123.279195325083	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAAAAAAAGATGCAGA	NA	False	NA	NA	False	AAGAAA	-9	NA	65219373	65199546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_65199605_65200579_65200668_65201492_65201624_65203765_65203840_65205168_65205636_65219222
transcript_12065.known	chr12	+	2228	2	FSM	ENSMUSG00000035560.6	ENSMUST00000046331.5	2228	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGATGACCTCTTTGTTTC	NA	False	NA	NA	False	AATAAA	-19	NA	65272290	65275228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_65274272_65274981
transcript_12066.known	chr12	-	1023	1	FSM	ENSMUSG00000060499.8	ENSMUST00000081908.8	1023	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	504	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTAGCTTTGGTTGTTTTG	NA	False	NA	-4	True	ATTAAA	-20	NA	66331175	66330152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_66330200_66331200
transcript_12067.known	chr12	+	556	1	FSM	ENSMUSG00000113948.2	ENSMUST00000221295.2	556	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8620	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCAGCATAAAATAAAGGCA	NA	False	NA	NA	False	AAGAAA	-35	NA	67557529	67558085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_67557500_67558100
transcript_12068.known	chr12	-	390	3	FSM	ENSMUSG00000034892.9	ENSMUST00000037023.9	390	3	0	0	0	0	multi-exon	FALSE	canonical	3	25458	junction_2	210	13874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGTGTGTTTTGT	NA	False	NA	-10	True	AATAAA	-18	NA	69205960	69204495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_69204596_69205434_69205535_69205770
transcript_12070.known	chr12	-	461	2	FSM	ENSMUSG00000034892.9	ENSMUST00000094291.3	461	2	0	0	0	0	multi-exon	FALSE	canonical	3	25458	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTCAAAAGTCTCCTTTT	NA	False	NA	NA	False	NA	NA	NA	69205828	69205131	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_69205535_69205770
transcript_12072.known	chr12	+	1500	4	FSM	ENSMUSG00000034883.10	ENSMUST00000110621.3	1500	4	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	15.6276108929747	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAATGTCTCAGCAGTTA	NA	False	NA	9	True	ATTAAA	-23	NA	69215587	69225783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_69215837_69218635_69218735_69221165_69221888_69225353
transcript_12073.nic	chr12	+	981	4	NIC	ENSMUSG00000034883.10	novel	1500	4	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	1	8	junction_2	56.8409085860605	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAATGTCTCAGCAGTTA	NA	False	NA	9	True	ATTAAA	-23	NA	69215550	69225783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_69215837_69218635_69218735_69221721_69221888_69225353
transcript_12074.known	chr12	+	767	3	FSM	ENSMUSG00000034883.10	ENSMUST00000222520.2	767	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	59	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTATATCAATGTCTCAGCA	NA	False	NA	5	True	ATTAAA	-19	NA	69215594	69225779	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_69215837_69218635_69218735_69225353
transcript_12077.known	chr12	-	1706	19	FSM	ENSMUSG00000020974.7	ENSMUST00000021359.7	1706	19	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_1	34.9372011570955	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTACACATTGTAGTTT	NA	False	NA	-5	True	AATAAA	-20	NA	69274969	69248546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_69248657_69249680_69249749_69250864_69251042_69253183_69253293_69254632_69254711_69254794_69254855_69255690_69255746_69256085_69256176_69256595_69256769_69258146_69258220_69258996_69259046_69259760_69259818_69260602_69260687_69262084_69262160_69268750_69268845_69269172_69269251_69269877_69269954_69273111_69273213_69274870
transcript_12080.known	chr12	-	1641	19	FSM	ENSMUSG00000020974.7	ENSMUST00000221411.2	1641	19	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_2	100.091563019339	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTACACATTGTAGTTT	NA	False	NA	-5	True	AATAAA	-20	NA	69274953	69248546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_69248657_69249680_69249749_69250913_69251042_69253183_69253293_69254632_69254711_69254794_69254855_69255690_69255746_69256085_69256176_69256595_69256769_69258146_69258220_69258996_69259046_69259760_69259818_69260602_69260687_69262084_69262160_69268750_69268845_69269172_69269251_69269877_69269954_69273111_69273213_69274870
transcript_12089.known	chr12	-	3390	3	FSM	ENSMUSG00000020973.8	ENSMUST00000021356.6	3390	3	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_2	19	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTTACCTACATTCTC	NA	False	NA	-8	True	AATAAA	-16	NA	69245203	69235860	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_69237169_69239581_69239726_69243265
transcript_12092.known	chr12	-	757	2	FSM	ENSMUSG00000049751.7	ENSMUST00000110620.2	757	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	797	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTTTGATTCTCAGTA	NA	False	NA	2	True	AATAAA	-24	NA	69230760	69229504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_69229940_69230438
transcript_12093.known	chr12	-	1276	1	FSM	ENSMUSG00000049751.7	ENSMUST00000110619.2	1276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGCCTTGTGTTTTGATT	NA	False	NA	-5	True	AATAAA	-17	NA	69230787	69229511	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_69229500_69230800
transcript_12094.known	chr12	+	2614	1	FSM	ENSMUSG00000043998.11	ENSMUST00000060579.10	2614	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCATCACATCTTAATAT	2294	False	NA	NA	False	AATAAA	-23	NA	69230930	69233544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_69230900_69233500
transcript_12095.known	chr12	-	526	2	FSM	ENSMUSG00000049751.7	ENSMUST00000054544.7	526	2	0	0	0	0	multi-exon	FALSE	canonical	3	5332	junction_1	0	9063	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCAAGCCTTGTGTTTTG	NA	False	NA	-8	True	AATAAA	-14	NA	69230857	69229514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_69229940_69230756
transcript_12098.known	chr12	+	2620	13	FSM	ENSMUSG00000051890.14	ENSMUST00000063445.13	2620	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	3.37474278855276	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTCAGTGTGAATTTTAA	NA	False	NA	NA	False	AATAAA	-16	NA	69288605	69331406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_69288788_69297526_69297598_69298144_69298263_69298701_69298821_69300465_69300545_69302948_69303033_69304796_69304881_69305342_69305402_69306274_69306388_69309922_69309996_69315015_69315101_69316599_69316653_69329906
transcript_121.known	SIRV4001	+	3997	1	FSM	SIRV4001A	SIRV4001	3997	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	3997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV4001_+_0_4000
transcript_12100.known	chr12	+	228	2	FSM	ENSMUSG00000051890.14	ENSMUST00000127791.2	228	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCAGGTCCGAGTGGGTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	69288687	69289416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_69288788_69289288
transcript_12102.known	chr12	-	4732	33	FSM	ENSMUSG00000020982.10	ENSMUST00000021368.10	4732	33	0	0	0	0	multi-exon	TRUE	canonical	3	259	junction_6	33.0300526036517	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGCCAACA	NA	False	NA	NA	False	NA	NA	NA	69403939	69357295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_69358855_69359028_69359109_69359198_69359243_69359339_69359441_69361189_69361223_69363017_69363213_69363516_69363595_69364800_69364955_69367146_69367197_69367300_69367344_69368874_69369125_69371005_69371127_69371206_69371266_69371692_69371751_69374407_69374521_69377861_69377925_69378645_69378750_69384592_69384682_69386492_69386557_69387664_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_12114.known	chr12	-	1340	14	FSM	ENSMUSG00000020982.10	ENSMUST00000222763.2	1340	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	83.598505125221	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAAGCAGCTGCAGAAGC	NA	False	NA	NA	False	NA	NA	NA	69403912	69387751	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_69387831_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_12115.nic	chr12	-	1399	14	ISM	ENSMUSG00000020982.10	ENSMUST00000220674.2	2370	20	-59	16511	-36	0	5prime_fragment	FALSE	canonical	3	286	junction_8	27.062496156579	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGGGAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	69403975	69387775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_69387851_69388046_69388256_69388346_69388425_69390902_69390966_69391453_69391530_69391682_69391754_69393089_69393164_69395624_69395712_69399080_69399149_69400567_69400717_69401420_69401547_69402803_69402907_69403052_69403122_69403824
transcript_12116.known	chr12	+	1905	13	FSM	ENSMUSG00000020978.11	ENSMUST00000021362.5	1905	13	0	0	0	0	multi-exon	TRUE	canonical	3	493	junction_10	56.6727937863977	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGACTTTTTATCCCACG	NA	False	NA	NA	False	NA	NA	NA	69343495	69357461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_69343922_69346989_69347070_69349097_69349216_69350307_69350424_69350654_69350737_69351317_69351402_69352401_69352483_69352556_69352616_69353963_69354074_69354391_69354465_69355731_69355820_69356760_69356814_69356926
transcript_12117.nic	chr12	-	1157	6	NIC	ENSMUSG00000049882.11	novel	1109	6	NA	NA	24	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	61.6071424430642	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAAGCAGCATGGTTGG	NA	False	NA	-5	True	AATAAA	-24	NA	69629860	69624401	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_69624715_69626607_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629494
transcript_12118.known	chr12	-	1018	6	FSM	ENSMUSG00000049882.11	ENSMUST00000238220.2	1018	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	78.351515620312	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGAAACGTTGACAATC	NA	False	NA	-59	True	NA	NA	NA	69629791	69624455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_69624715_69626607_69626785_69627891_69628012_69629049_69629120_69629304_69629400_69629494
transcript_12120.known	chr12	-	1109	6	FSM	ENSMUSG00000049882.11	ENSMUST00000058639.11	1109	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	23.3837550449024	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAAGCAGCATGGTTGG	NA	False	NA	-5	True	AATAAA	-24	NA	69629884	69624401	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629494
transcript_12121.nnic	chr12	-	906	6	NNC	ENSMUSG00000049882.11	novel	1109	6	NA	NA	32	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	66.6375269649167	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGAAGCAGCATGGTTGG	NA	False	NA	-5	True	AATAAA	-24	NA	69629852	69624401	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629293_69629405_69629665
transcript_12123.known	chr12	-	875	6	FSM	ENSMUSG00000049882.11	ENSMUST00000238784.2	875	6	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	48.4710222710435	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGAAGACTGCCTCACAG	NA	False	NA	NA	False	NA	NA	NA	69629884	69624624	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_69624715_69626679_69626785_69627891_69628012_69629049_69629120_69629304_69629405_69629494
transcript_1213.known	chr1	+	2713	7	FSM	ENSMUSG00000026005.16	ENSMUST00000113995.2	2713	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	373.751439982362	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAACTTGAATTCTTGAT	NA	False	NA	5	True	ATTAAA	-12	NA	66739989	66758964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_66740177_66740775_66740808_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
transcript_12133.known	chr12	-	3340	10	FSM	ENSMUSG00000020988.10	ENSMUST00000021370.10	3340	10	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_5	64.6821287356699	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTTATGATCATATT	NA	False	NA	0	True	AATAAA	-34	NA	69771647	69737206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69752538_69752574_69753897_69754061_69759395_69759528_69768085_69768238_69768851_69768968_69771427
transcript_12137.nnic	chr12	-	3166	8	NIC	ENSMUSG00000020988.10	novel	3340	10	NA	NA	-24	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_4	181.049998731887	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTTATGATCATATT	NA	False	NA	0	True	AATAAA	-34	NA	69771671	69737206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_69739271_69746259_69746392_69748057_69748216_69748976_69749145_69759395_69759528_69768085_69768238_69768851_69768968_69771427
transcript_12141.nic	chr12	-	602	3	ISM	ENSMUSG00000020988.10	ENSMUST00000021370.10	3340	10	-24	30789	-24	-8501	5prime_fragment	FALSE	canonical	3	564	junction_2	31.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTGTGCCTATGTAATT	NA	False	NA	NA	False	AAAAAG	-15	NA	69771671	69767995	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_69768238_69768851_69768968_69771427
transcript_12142.nnic	chr12	+	831	7	NNC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	-5	-820	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	95.0305506432303	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTGGTGTCACTATTAA	NA	False	NA	NA	False	ATTAAA	-16	NA	69771718	69790612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_69771789_69772228_69772329_69778899_69778949_69784724_69784836_69787672_69787882_69788418_69788591_69790492
transcript_12146.known	chr12	+	1599	6	FSM	ENSMUSG00000054894.7	ENSMUST00000220916.2	1599	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	68.5787138987018	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGCTAGTCTTTACTT	NA	False	NA	4	True	AATAAA	-16	NA	69771723	69791434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_69771789_69772228_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
transcript_12148.nnic	chr12	+	788	6	NNC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	6	-820	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	79.2328214820096	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTGGTGTCACTATTAA	NA	False	NA	NA	False	ATTAAA	-16	NA	69771729	69790612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_69771793_69772215_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
transcript_12149.nnic	chr12	+	1610	6	NNC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	79.2328214820096	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGCTAGTCTTTACTT	NA	False	NA	4	True	AATAAA	-16	NA	69771729	69791434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_69771793_69772215_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
transcript_12151.known	chr12	+	1485	5	FSM	ENSMUSG00000054894.7	ENSMUST00000021372.6	1485	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	45.2513811943901	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAAGGCTAGTCTTTAC	NA	False	NA	2	True	AATAAA	-14	NA	69771735	69791432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_69771789_69784724_69784836_69787672_69787882_69788418_69788591_69790492
transcript_12153.nic	chr12	+	1226	5	NIC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	-9	-820	intron_retention	FALSE	canonical	3	110	junction_1	42.1270400099509	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTGGTGTCACTATTAA	NA	False	NA	NA	False	ATTAAA	-16	NA	69771714	69790612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
transcript_12154.nic	chr12	+	2048	5	NIC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	-9	0	intron_retention	FALSE	canonical	3	110	junction_1	42.1270400099509	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGCTAGTCTTTACTT	NA	False	NA	4	True	AATAAA	-16	NA	69771714	69791434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_69772329_69784724_69784836_69787672_69787882_69788418_69788591_69790492
transcript_12159.nic	chr12	+	1395	4	NIC	ENSMUSG00000054894.7	novel	1599	6	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	90.3487071788462	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGCTAGTCTTTACTT	NA	False	NA	4	True	AATAAA	-16	NA	69771716	69791434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_69771789_69787672_69787882_69788418_69788591_69790492
transcript_1216.known	chr1	+	2692	6	FSM	ENSMUSG00000026005.16	ENSMUST00000027157.10	2692	6	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_1	56.5840967056999	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAACTTGAATTCTTGAT	NA	False	NA	5	True	ATTAAA	-12	NA	66739989	66758964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_66740188_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
transcript_12161.known	chr12	-	4452	31	FSM	ENSMUSG00000034761.16	ENSMUST00000049239.8	4452	31	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_9	26.8295856596159	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTATAAAGTATTTGTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	69939937	69850532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_69852126_69853971_69854028_69855985_69856057_69858047_69858141_69859909_69859979_69862528_69862707_69863063_69863168_69864795_69864855_69865157_69865276_69869576_69869638_69870195_69870276_69871353_69871439_69872515_69872558_69873064_69873163_69874135_69874293_69874797_69874841_69877202_69877271_69878325_69878385_69884768_69884848_69888693_69888811_69889661_69889744_69891129_69891193_69892454_69892587_69896320_69896394_69897599_69897643_69897727_69897776_69899472_69899529_69903054_69903120_69903546_69903638_69921050_69921109_69939426
transcript_12163.known	chr12	-	2825	20	FSM	ENSMUSG00000021069.18	ENSMUST00000071250.13	2825	20	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_17	3.93154724147013	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCTTGGATTCCTTTCC	6200	False	NA	0	True	AATAAA	-28	NA	70274457	70237584	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_70237931_70240512_70240580_70241006_70241142_70242277_70242486_70243744_70243887_70243991_70244051_70244171_70244320_70244433_70244536_70245203_70245319_70246415_70246580_70246905_70247053_70248042_70248136_70248618_70248763_70253135_70253219_70254444_70254557_70257800_70257933_70263336_70263441_70266362_70266442_70269598_70269701_70274114
transcript_12165.known	chr12	+	2795	8	FSM	ENSMUSG00000021072.13	ENSMUST00000021471.13	2795	8	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_7	45.1044140108849	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTGGTGTTCTCATAAG	NA	False	NA	13	True	ATTAAA	-16	NA	70499868	70514814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_70500095_70502785_70502902_70503354_70503401_70505552_70505682_70507118_70507165_70507252_70507355_70511173_70511241_70512751
transcript_12167.nic	chr12	+	4696	14	NIC	ENSMUSG00000048285.10	novel	4662	14	NA	NA	-58	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	34.6862522431374	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCTCTTGTTATTATAC	729	False	NA	NA	False	AATAAA	-21	NA	70872229	70949008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_70872348_70910650_70910917_70919264_70919356_70923933_70924014_70925190_70925268_70927392_70927580_70930439_70930596_70933797_70933864_70934582_70934652_70936705_70936881_70940380_70940717_70941650_70941783_70944115_70944208_70946157
transcript_12168.known	chr12	+	4662	14	FSM	ENSMUSG00000048285.10	ENSMUST00000057859.9	4662	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	41.9310507589719	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCTCTTGTTATTATAC	787	False	NA	NA	False	AATAAA	-21	NA	70872287	70949008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_70872348_70910650_70910917_70919264_70919356_70923933_70924038_70925190_70925268_70927392_70927580_70930439_70930596_70933797_70933864_70934582_70934652_70936705_70936881_70940380_70940717_70941650_70941783_70944115_70944208_70946157
transcript_12169.nnic	chr12	+	2157	14	NNC	ENSMUSG00000021076.7	novel	4022	13	NA	NA	-21	993	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_13	94.5177106850144	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGCTCTTGTGCTTTCT	9624	False	NA	NA	False	AATAAA	-21	NA	70984609	71009828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477_70996546_70999723_70999804_71001392_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640_71009570_71009791
transcript_12170.known	chr12	+	4022	13	FSM	ENSMUSG00000021076.7	ENSMUST00000021479.6	4022	13	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_4	23.8006769278149	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATTGCTCTGCAGCCTT	9645	False	NA	NA	False	AATAAA	-21	NA	70984630	71011492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225_70994334_70996477_70996546_70999723_70999804_71001392_71001429_71003046_71003127_71003373_71003448_71004805_71004888_71006614_71006817_71008640
transcript_12174.known	chr12	+	615	5	FSM	ENSMUSG00000021076.7	ENSMUST00000222291.2	615	5	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_4	20.5836707124847	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGAGAGATTTAAGCTT	9731	False	NA	NA	False	NA	NA	NA	70984716	70994486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_70984806_70987571_70987645_70989032_70989116_70990182_70990292_70994225
transcript_12176.known	chr12	-	1063	3	FSM	ENSMUSG00000085622.10	ENSMUST00000136690.3	1063	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	2	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGTTCATAGATTCCATT	NA	False	NA	NA	False	AATAAA	-26	NA	71062606	71056568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_71057254_71061229_71061282_71062280
transcript_12178.known	chr12	-	1790	1	FSM	ENSMUSG00000085622.10	ENSMUST00000222159.2	1790	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	71062369	71060579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_71060600_71062400
transcript_12179.known	chr12	+	1394	11	FSM	ENSMUSG00000060073.10	ENSMUST00000162626.8	1394	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	1218.25789141708	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4770	False	NA	NA	False	NA	NA	NA	71021444	71041695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_71021542_71025506_71025614_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
transcript_12180.known	chr12	+	875	11	FSM	ENSMUSG00000060073.10	ENSMUST00000071704.4	875	11	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_2	1129.97747322679	3284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGATTTTCATTAAATTTTG	4814	False	NA	-25	True	NA	NA	NA	71021488	71041249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_71021542_71025506_71025590_71030097_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
transcript_12181.known	chr12	+	1027	10	FSM	ENSMUSG00000060073.10	ENSMUST00000160683.8	1027	10	0	0	0	0	multi-exon	FALSE	canonical	3	3391	junction_7	435.06460425613	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTGTTGGGTAATTGA	4770	False	NA	1	True	ATTAAA	-12	NA	71021444	71041275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_71021542_71025506_71025590_71030092_71030217_71031266_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
transcript_12182.known	chr12	+	1022	2	FSM	ENSMUSG00000060073.10	ENSMUST00000161041.2	1022	2	0	0	0	0	multi-exon	FALSE	canonical	3	4712	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	4807	False	NA	NA	False	NA	NA	NA	71021481	71026468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_71021542_71025506
transcript_12183.known	chr12	+	859	10	FSM	ENSMUSG00000060073.10	ENSMUST00000160864.8	859	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1213.70727855801	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTGGGTAATTGAAGCT	4782	False	NA	5	True	ATTAAA	-16	NA	71021456	71041279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_71021542_71030092_71030217_71031266_71031369_71031445_71031520_71033636_71033710_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
transcript_12184.known	chr12	+	562	7	FSM	ENSMUSG00000060073.10	ENSMUST00000162851.8	562	7	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	1480.68865359632	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTTGGGTAATTGAAGC	4788	False	NA	4	True	ATTAAA	-15	NA	71021462	71041278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_71021542_71025506_71025590_71035197_71035264_71037258_71037306_71039786_71039855_71040279_71040345_71041124
transcript_12185.known	chr12	+	4998	24	FSM	ENSMUSG00000048118.18	ENSMUST00000046305.12	4998	24	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_5	14.334249175764	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGGTTAATTCACTCTT	3381	False	NA	6	True	AATAAA	-17	NA	71062763	71145366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_71062936_71063864_71063923_71066147_71066259_71068966_71069033_71070273_71070365_71083883_71083964_71084044_71084140_71086612_71086746_71091797_71091878_71092887_71092965_71093967_71094135_71106835_71106909_71108055_71108151_71108304_71108403_71109866_71110099_71113852_71114113_71116607_71116806_71118581_71118667_71119363_71119506_71121709_71122844_71123216_71123322_71133228_71133436_71134234_71134382_71144274
transcript_12186.nic	chr12	+	2122	18	ISM	ENSMUSG00000048118.18	ENSMUST00000046305.12	4998	24	31	26718	-8	-3531	5prime_fragment	FALSE	canonical	3	75	junction_5	8.6192028308566	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAAGAAGAAAGTTAAGGT	3412	False	NA	NA	False	AAGAAA	-4	NA	71062794	71118648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_71062936_71063864_71063923_71066147_71066259_71068966_71069033_71070273_71070365_71083883_71083964_71084044_71084140_71086612_71086746_71091797_71091878_71092887_71092965_71093967_71094135_71106835_71106909_71108055_71108151_71108304_71108403_71109866_71110099_71113852_71114113_71116607_71116806_71118581
transcript_12187.nic	chr12	+	1525	15	ISM	ENSMUSG00000048118.18	ENSMUST00000046305.12	4998	24	-47	35418	-47	-4087	5prime_fragment	FALSE	canonical	3	75	junction_5	9.00141712199149	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGGAAAAAAAAGACTTTGA	3334	False	NA	NA	False	AGTAAA	-2	NA	71062716	71109948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_71062936_71063864_71063923_71066147_71066259_71068966_71069033_71070273_71070365_71083883_71083964_71084044_71084140_71086612_71086746_71091797_71091878_71092887_71092965_71093967_71094135_71106835_71106909_71108055_71108151_71108304_71108403_71109866
transcript_12189.known	chr12	-	990	6	FSM	ENSMUSG00000021079.17	ENSMUST00000166120.9	990	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	130.329735670721	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTTGTCTTTACTGTA	NA	False	NA	-19	True	AATAAA	-12	NA	71183422	71169947	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71179280_71179417_71183328
transcript_12190.known	chr12	-	859	6	FSM	ENSMUSG00000021079.17	ENSMUST00000220482.2	859	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	130.329735670721	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGACCAATGGAAACCACCAG	NA	False	NA	NA	False	NA	NA	NA	71183386	71170198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71179280_71179573_71183328
transcript_12191.nnic	chr12	-	989	6	NNC	ENSMUSG00000021079.17	novel	990	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	124.393890525218	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71183458	71169946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71180673_71180772_71183328
transcript_12192.known	chr12	-	718	5	FSM	ENSMUSG00000021079.17	ENSMUST00000221559.2	718	5	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_4	64.161417534216	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGATTGCAAAAATAAACCAC	NA	False	NA	-53	True	NA	NA	NA	71183408	71170069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71178774_71178861_71183328
transcript_12193.known	chr12	-	794	4	FSM	ENSMUSG00000021079.17	ENSMUST00000021486.10	794	4	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	97.112763779479	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAGTTGTCTTTACTGTAT	NA	False	NA	-18	True	AATAAA	-13	NA	71183447	71169946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_71170461_71172235_71172332_71173106_71173172_71183328
transcript_12194.known	chr12	-	1098	1	FSM	ENSMUSG00000021079.17	ENSMUST00000223544.2	1098	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTTGTCTGTTCATCCC	NA	False	NA	NA	False	NA	NA	NA	71183409	71182311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_71182300_71183400
transcript_12195.nic	chr12	+	2774	13	ISM	ENSMUSG00000034601.18	ENSMUST00000149564.8	5763	30	329	80282	329	8134	5prime_fragment	FALSE	canonical	3	118	junction_6	8.91471941354422	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAAGGCCTCTTAGTGTGTT	NA	False	NA	NA	False	CATAAA	-19	NA	71183950	71209795	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_71184813_71186428_71186503_71187638_71187709_71188823_71188894_71195017_71195193_71197016_71197239_71199423_71199572_71201535_71201698_71203820_71203945_71205601_71205732_71206964_71207183_71207897_71207971_71209349
transcript_12196.known	chr12	+	5763	30	FSM	ENSMUSG00000034601.18	ENSMUST00000149564.8	5763	30	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_27	23.3199327353747	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGCTGTTTCTTAGAAG	NA	False	NA	22	True	AATAAA	-20	NA	71183621	71290077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_71184813_71186428_71186503_71187638_71187709_71188823_71188894_71195017_71195193_71197016_71197239_71199423_71199572_71201535_71201698_71203820_71203945_71205601_71205732_71206964_71207183_71207897_71207971_71209349_71209575_71211157_71211333_71213839_71214035_71217292_71217481_71219902_71220014_71222696_71222778_71224602_71224797_71225813_71225933_71231196_71231397_71234154_71234312_71235361_71235582_71236180_71236429_71237668_71237740_71240040_71240164_71241065_71241241_71262815_71262971_71265964_71266074_71289717
transcript_12197.known	chr12	+	5835	26	FSM	ENSMUSG00000034574.11	ENSMUST00000223272.2	5835	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	43.1749927620144	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTTTTCTATGCATTA	1803	False	NA	22	True	AATAAA	-22	NA	71877851	72039107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_71877971_71942500_71942721_71962472_71962563_71983332_71983405_71988946_71989042_71990827_71991162_71991957_71992069_71992171_71992276_71993001_71993069_71993288_71993407_71993772_71993912_71994166_71994226_71997967_71998156_71998606_71998907_71999225_71999334_72005520_72005548_72006579_72006687_72017867_72017953_72021963_72022071_72023569_72023659_72024416_72024586_72027527_72027636_72029466_72029528_72032456_72032589_72035659_72035831_72036452
transcript_12198.known	chr12	-	3150	1	FSM	ENSMUSG00000043398.6	ENSMUST00000050649.6	3150	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAGATGTTTTGTTTTGT	NA	False	NA	-5	True	AATACA	-19	NA	72117899	72114749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_72114700_72117900
transcript_12199.known	chr12	-	1831	5	FSM	ENSMUSG00000019718.9	ENSMUST00000019862.3	1831	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	3.20156211871642	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAAAAGGAGTCAACTTCT	NA	False	NA	NA	False	CATAAA	-14	NA	72132213	72120201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_72120811_72123917_72124056_72124137_72124261_72126260_72126431_72131422
transcript_122.known	SIRV4002	+	3999	1	FSM	SIRV4002A	SIRV4002	3999	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	3999	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV4002_+_0_4000
transcript_12201.nnic	chr12	+	1339	8	NNC	ENSMUSG00000005078.17	novel	1292	7	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	229.071061071468	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCCCGAAAAG	NA	False	NA	NA	False	TATAAA	-23	NA	72132540	72147631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_72132686_72132724_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
transcript_12203.nnic	chr12	+	1549	8	NNC	ENSMUSG00000005078.17	novel	1874	7	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	267.673422708512	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCCCGAAAAG	NA	False	NA	NA	False	TATAAA	-23	NA	72132312	72147631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_72132686_72132724_72132958_72136106_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
transcript_12204.nnic	chr12	+	1363	8	NNC	ENSMUSG00000005078.17	novel	1292	7	NA	NA	-45	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	229.071061071468	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATCCCGAAAAG	NA	False	NA	NA	False	TATAAA	-23	NA	72132517	72147631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_72132650_72132687_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
transcript_12209.known	chr12	+	1292	7	FSM	ENSMUSG00000005078.17	ENSMUST00000057257.10	1292	7	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_1	87.1563091360701	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATCCCGAAAAGTATT	NA	False	NA	NA	False	TATAAA	-27	NA	72132630	72147635	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_72132958_72136088_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
transcript_12210.known	chr12	+	1874	7	FSM	ENSMUSG00000005078.17	ENSMUST00000117449.8	1874	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	199.890525593942	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCATGTTCTGATAATTCT	NA	False	NA	14	True	AATAAA	-20	NA	72132630	72148235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_72132958_72136106_72136181_72136729_72136885_72140710_72140918_72141459_72141642_72146820_72146898_72147383
transcript_12211.known	chr12	-	1008	7	FSM	ENSMUSG00000021087.19	ENSMUST00000137990.2	1008	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	4.27200187265877	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	ACTAAA	-42	NA	72283498	72259062	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_72259352_72263544_72263604_72263688_72263736_72264192_72264263_72266030_72266170_72270105_72270314_72283302
transcript_12213.nic	chr12	+	1278	9	ISM	ENSMUSG00000021090.17	ENSMUST00000161957.2	2520	16	110	14127	110	5317	5prime_fragment	FALSE	canonical	2	5	junction_7	3.31426839589071	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGAGTTGAGCTCAGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	72489132	72506857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_72489245_72496093_72496175_72496421_72496641_72497450_72497592_72497998_72498063_72498736_72498808_72500818_72501002_72502756_72502913_72506606
transcript_12216.nic	chr12	+	689	2	ISM	ENSMUSG00000034501.8	ENSMUST00000044352.8	4300	11	-43	38256	-43	-38256	5prime_fragment	FALSE	canonical	3	96	junction_1	0	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGGGCTAGTGTGTGG	NA	False	NA	17	True	AATACA	-16	NA	72583113	72588637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_72583314_72588148
transcript_12217.nic	chr12	+	1057	2	ISM	ENSMUSG00000034501.8	ENSMUST00000044352.8	4300	11	-43	37888	-43	-37888	5prime_fragment	FALSE	canonical	3	96	junction_1	0	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGGGAGAGTTAGGTTA	NA	False	NA	NA	False	ATTAAA	-14	NA	72583113	72589005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_72583314_72588148
transcript_12218.known	chr12	-	1385	7	FSM	ENSMUSG00000021094.11	ENSMUST00000021512.11	1385	7	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	5.61990510002912	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGACTGCAGACTTAGA	NA	False	NA	43	True	AATAAA	-16	NA	72711683	72697126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_72697392_72699008_72699225_72699874_72699998_72703073_72703314_72704101_72704209_72706117_72706271_72711402
transcript_1222.nnic	chr1	+	2394	6	NIC	ENSMUSG00000026005.16	novel	2713	7	NA	NA	-8	-295	combination_of_known_splicesites	FALSE	canonical	3	56	junction_1	305.506530208439	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAAGTTTGTAAGTATTG	NA	False	NA	15	True	NA	NA	NA	66739981	66758669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_66740177_66745604_66745685_66753735_66753876_66754271_66754407_66755117_66755205_66756912
transcript_12220.known	chr12	-	1308	7	FSM	ENSMUSG00000021094.11	ENSMUST00000221750.2	1308	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	42.7528426605244	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAGACTGCAGACTTAGA	NA	False	NA	43	True	AATAAA	-16	NA	72711528	72697126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_72697392_72699008_72699225_72699874_72699998_72703073_72703314_72704101_72704209_72706039_72706271_72711402
transcript_12227.known	chr12	-	2051	18	FSM	ENSMUSG00000021098.15	ENSMUST00000044000.12	2051	18	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_10	9.78559070609067	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGTTGAATTATTTGATT	NA	False	NA	NA	False	ATTAAA	-15	NA	72964680	72927882	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_72928199_72931996_72932055_72936481_72936621_72939577_72939754_72941757_72941820_72945260_72945308_72945483_72945570_72949186_72949264_72949989_72950109_72952964_72953054_72954594_72954716_72956544_72956588_72956677_72956866_72959958_72960049_72962129_72962257_72963447_72963505_72963596_72963654_72964481
transcript_1224.known	chr1	-	1916	11	FSM	ENSMUSG00000026003.6	ENSMUST00000027153.6	1916	11	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_4	12.5315601582564	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGCCCTGGGGAATGAGA	NA	False	NA	-19	True	AATAAA	-29	NA	66902436	66869997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_66870687_66876120_66876208_66877437_66877566_66880780_66880895_66882239_66882342_66884326_66884492_66887558_66887626_66892285_66892451_66893782_66893921_66896557_66896714_66902331
transcript_12247.nic	chr12	-	2048	5	ISM	ENSMUSG00000021098.15	ENSMUST00000044000.12	2051	18	8	30550	8	0	5prime_fragment	FALSE	canonical	3	18	junction_2	8.16624148553054	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGGGTATTTTGCCT	NA	False	NA	NA	False	AATAAA	-21	NA	72964672	72958432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_72960049_72962129_72962257_72963447_72963505_72963596_72963654_72964481
transcript_12252.nic	chr12	-	656	5	ISM	ENSMUSG00000021098.15	ENSMUST00000044000.12	2051	18	8	31942	8	136	5prime_fragment	FALSE	canonical	3	18	junction_2	8.16624148553054	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGCCTATTATAAATTCC	NA	False	NA	NA	False	AGTAAA	-24	NA	72964672	72959824	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_72960049_72962129_72962257_72963447_72963505_72963596_72963654_72964481
transcript_12255.nic	chr12	-	1921	4	NIC	ENSMUSG00000021098.15	novel	1970	6	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	9.42809041582063	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGGGTATTTTGCCT	NA	False	NA	NA	False	AATAAA	-21	NA	72964672	72958432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_72960049_72963447_72963505_72963596_72963654_72964481
transcript_12257.nic	chr12	-	524	4	NIC	ENSMUSG00000021098.15	novel	2051	18	NA	NA	8	131	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	9.42809041582063	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAAGTCTGCCTATTATAA	NA	False	NA	NA	False	AGTAAA	-19	NA	72964672	72959829	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_72960049_72963447_72963505_72963596_72963654_72964481
transcript_12260.nnic	chr12	+	1421	9	NNC	ENSMUSG00000021103.13	novel	2505	8	NA	NA	-11577	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	125.672938614485	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTTTGTGGGATTTTTT	NA	False	NA	6	True	AATAAA	-16	NA	73158913	73319625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_73159029_73170552_73170701_73214773_73214927_73217367_73217442_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
transcript_12262.known	chr12	+	2505	8	FSM	ENSMUSG00000021103.13	ENSMUST00000021523.7	2505	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	110.46488037344	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTGACTTAGAAATCTTTA	NA	False	NA	NA	False	AATAAA	-19	NA	73170490	73320762	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_73170701_73214773_73214927_73217367_73217442_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
transcript_12264.known	chr12	+	1294	7	FSM	ENSMUSG00000021103.13	ENSMUST00000189644.7	1294	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	149.362813310409	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTTTGTGGGATTTTTT	NA	False	NA	6	True	AATAAA	-16	NA	73170490	73319625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_73170701_73214773_73214927_73225978_73226083_73228557_73228699_73234913_73235040_73265794_73265917_73319187
transcript_12269.nic	chr12	-	1753	6	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	-1	83	combination_of_known_junctions	FALSE	canonical	2	6	junction_5	42.8205558114324	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGATATTGTATAGACTG	NA	False	NA	-12	True	AGTAAA	-16	NA	73333485	73327171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_73327407_73327778_73328431_73329385_73329511_73331408_73332050_73332677_73332750_73333457
transcript_12275.known	chr12	-	2066	5	FSM	ENSMUSG00000034442.12	ENSMUST00000116420.4	2066	5	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	19.266226926931	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGTAATTCAAGGTATTT	NA	False	NA	-6	True	AATAAA	-21	NA	73333483	73326784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_73327407_73327778_73328431_73329385_73329511_73331408_73332050_73333457
transcript_12277.nic	chr12	-	1057	4	NIC	ENSMUSG00000034442.12	novel	2066	5	NA	NA	-29	83	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	38.0029238641216	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGATATTGTATAGACTG	NA	False	NA	-12	True	AGTAAA	-16	NA	73333513	73327171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_73327407_73329385_73329511_73331408_73332050_73333457
transcript_1228.nic	chr1	-	1428	10	NIC	ENSMUSG00000026000.17	novel	1385	10	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	85	junction_9	146.548774167089	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGAGTTTTTATTTCC	NA	False	NA	-5	True	AATGAA	-16	NA	67078066	67042533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653_67077751_67077960
transcript_12281.known	chr12	+	3032	16	FSM	ENSMUSG00000044712.16	ENSMUST00000140523.8	3032	16	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_10	3.76769897358528	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGCTGGTTTTTTTTTA	NA	False	NA	8	True	NA	NA	NA	73333552	73400823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_73333807_73335166_73335298_73338933_73339008_73356918_73356972_73365750_73365791_73376753_73376833_73383795_73383879_73384283_73384343_73388181_73388248_73388480_73388535_73390442_73390523_73391566_73391668_73397287_73397413_73398524_73398670_73398852_73398948_73399230
transcript_12285.known	chr12	+	4724	15	FSM	ENSMUSG00000021109.14	ENSMUST00000021530.8	4724	15	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_10	63.740545517411	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCATATCTTTCTAGTTC	8358	False	NA	11	True	AATAAA	-22	NA	73954677	73994304	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_73955099_73973330_73973522_73974759_73974906_73974987_73975073_73977430_73977544_73979047_73979251_73982963_73983071_73984426_73984575_73986302_73986524_73987121_73987406_73988461_73988627_73988734_73989160_73990852_73990962_73991684_73991812_73992325
transcript_12288.known	chr12	+	6275	10	FSM	ENSMUSG00000021113.6	ENSMUST00000021532.6	6275	10	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	11.7473401244707	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTTATTTTTGAGA	NA	False	NA	NA	False	NA	NA	NA	74011299	74035740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_74011521_74014681_74014842_74015012_74015154_74016300_74016406_74016954_74017114_74018658_74018728_74019310_74019374_74021784_74021936_74029251_74029354_74030636
transcript_1229.known	chr1	-	4461	9	FSM	ENSMUSG00000026000.17	ENSMUST00000113979.10	4461	9	0	0	0	0	multi-exon	FALSE	canonical	3	327	junction_5	113.959902487673	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATCGGGTACTGTTGTTTG	NA	False	NA	-2	True	AATAAA	-17	NA	67078031	67039675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653
transcript_12294.nnic	chr12	-	2299	3	NNC	ENSMUSG00000045690.9	novel	2381	3	NA	NA	-8	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	74	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGGTATCTTGTCTTAT	6402	False	NA	0	True	AATAAA	-19	NA	75716319	75677367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_75677656_75678345_75680283_75716245
transcript_12295.known	chr12	-	2979	2	FSM	ENSMUSG00000045690.9	ENSMUST00000062370.9	2979	2	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTGGGTATCTTGTCTT	6410	False	NA	-2	True	AATAAA	-17	NA	75716311	75677369	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_75680283_75716245
transcript_12297.known	chr12	-	348	1	FSM	ENSMUSG00000118552.2	ENSMUST00000238938.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	848	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTGCTCCCCTGCAAAT	NA	False	NA	-80	True	NA	NA	NA	75678092	75677744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_75677700_75678100
transcript_123.known	SIRV4003	+	4001	1	FSM	SIRV4003A	SIRV4003	4001	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	TATAAA	-45	NA	0	4001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV4003_+_0_4000
transcript_12305.known	chr12	+	3241	28	FSM	ENSMUSG00000021048.8	ENSMUST00000021443.7	3241	28	0	0	0	0	multi-exon	TRUE	canonical	3	837	junction_20	135.484134190258	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGTGTTGAAACATAAA	7911	False	NA	9	True	AATAAA	-17	NA	76302071	76366577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_76302319_76317191_76317277_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
transcript_12311.known	chr12	+	3040	27	FSM	ENSMUSG00000021048.8	ENSMUST00000220046.2	3040	27	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	281.366814005612	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTGGTGTTGAAACATAA	8026	False	NA	8	True	AATAAA	-16	NA	76302186	76366576	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_76302319_76326177_76326238_76326930_76326985_76327153_76327291_76327402_76327504_76329661_76329799_76330705_76330818_76335654_76335783_76336204_76336303_76336458_76336633_76337754_76337892_76340164_76340212_76340913_76341022_76341128_76341204_76344255_76344359_76347161_76347239_76348031_76348173_76349732_76349802_76350407_76350520_76350615_76350756_76353995_76354038_76357682_76357784_76358579_76358758_76361174_76361283_76361722_76361876_76364380_76364475_76366354
transcript_12319.known	chr12	-	438	3	FSM	ENSMUSG00000056459.15	ENSMUST00000176967.2	438	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	42	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACGCTGACTACCTTTCT	NA	False	NA	NA	False	AAAACA	-42	NA	76416238	76396916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_76397048_76402662_76402843_76416111
transcript_12320.known	chr12	-	1672	3	FSM	ENSMUSG00000056459.15	ENSMUST00000176278.8	1672	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_2	3	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTATGAGCTTTTCTATA	NA	False	NA	-2	True	ATTAAA	-16	NA	76416376	76395718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_76397048_76402662_76402843_76416213
transcript_12321.known	chr12	+	2526	1	FSM	ENSMUSG00000059970.8	ENSMUST00000219555.2	2526	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATTGCTGTCTGGCGTTT	NA	False	NA	NA	False	AGTAAA	-16	NA	76451182	76453708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_76451200_76453700
transcript_12322.known	chr12	+	2524	2	FSM	ENSMUSG00000059970.8	ENSMUST00000080449.7	2524	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGTCTGGCGTTTTCAA	NA	False	NA	NA	False	AGTAAA	-20	NA	76450949	76453712	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_76451064_76451302
transcript_12323.known	chr12	+	855	2	FSM	ENSMUSG00000073000.4	ENSMUST00000219367.2	855	2	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAAGTCCTGGCACCTCC	NA	False	NA	NA	False	AAAACA	-19	NA	76491270	76495434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_76491440_76494748
transcript_12329.known	chr12	+	2613	12	FSM	ENSMUSG00000033373.17	ENSMUST00000041008.10	2613	12	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_4	27.7548298231568	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGTCTTTTTTTTTTC	NA	False	NA	14	True	AATAAA	-15	NA	76884187	76968186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_76884426_76909259_76909325_76920149_76920223_76921805_76921898_76934505_76934653_76934745_76934830_76944100_76944188_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
transcript_1233.known	chr1	-	1385	10	FSM	ENSMUSG00000026000.17	ENSMUST00000119559.8	1385	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	165.875529714376	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGAGTTTTTATTTCC	NA	False	NA	-5	True	AATGAA	-16	NA	67077993	67042533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_67042717_67043497_67043571_67043948_67044126_67046026_67046210_67048386_67048534_67049069_67049206_67060016_67060225_67073282_67073401_67077653_67077751_67077930
transcript_12332.nnic	chr12	+	865	6	NNC	ENSMUSG00000033373.17	novel	384	2	NA	NA	-7313	132	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	113.544000281829	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACGGTGGTGTGATTTTT	NA	False	NA	NA	False	AAAACA	-24	NA	76948946	76967137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_76949034_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
transcript_12333.nnic	chr12	+	1914	6	NNC	ENSMUSG00000033373.17	novel	384	2	NA	NA	-7313	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	113.544000281829	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCTGTCTTTTTTTTTTC	NA	False	NA	14	True	AATAAA	-15	NA	76948946	76968186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_76949034_76953718_76953849_76956984_76957118_76961393_76961506_76963187_76963303_76966849
transcript_12335.nnic	chr12	+	533	5	NNC	ENSMUSG00000090258.8	novel	676	4	NA	NA	-54	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	214.20317457965	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGTATGTTTTCTTTT	NA	False	NA	9	True	AATGAA	-3	NA	76812257	76829954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586_76829728_76829924
transcript_12336.nnic	chr12	+	647	5	NNC	ENSMUSG00000090258.8	novel	676	4	NA	NA	-54	114	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	214.20317457965	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAGCTAGAGTGAGATGT	NA	False	NA	8	True	GATAAA	-18	NA	76812257	76830068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586_76829728_76829924
transcript_12337.known	chr12	+	676	4	FSM	ENSMUSG00000090258.8	ENSMUST00000041262.14	676	4	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_2	1.88561808316413	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTGTATGTTTTCTTTT	NA	False	NA	9	True	AATGAA	-3	NA	76812311	76829954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_76812413_76820031_76820168_76822367_76822439_76829586
transcript_1234.known	chr1	+	3559	11	FSM	ENSMUSG00000053153.15	ENSMUST00000113940.4	3559	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	1.81383571472171	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAAGTAACATCTCTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	69866150	69965401	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_69866281_69882127_69882175_69883437_69883534_69892481_69892601_69897631_69897770_69909422_69909531_69912292_69912411_69926650_69926718_69934385_69934431_69935630_69935741_69962820
transcript_12341.known	chr12	+	462	3	FSM	ENSMUSG00000090258.8	ENSMUST00000126408.2	462	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	247.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAATAAATAAATAAATCTTT	NA	False	NA	-52	True	NA	NA	NA	76812328	76829893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_76812413_76822367_76822439_76829586
transcript_12343.known	chr12	+	535	3	FSM	ENSMUSG00000090258.8	ENSMUST00000110399.3	535	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	248	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAAGCCTAATGGTTTGT	NA	False	NA	-24	True	NA	NA	NA	76812348	76829921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_76812413_76820031_76820168_76829586
transcript_12344.known	chr12	-	1010	2	FSM	ENSMUSG00000042808.11	ENSMUST00000082431.6	1010	2	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	0	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCTGGGTCTCTGTCTTC	NA	False	NA	-5	True	AATAAA	-16	NA	76842273	76839110	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_76839775_76841927
transcript_12349.known	chr12	-	1942	5	FSM	ENSMUSG00000059436.14	ENSMUST00000110395.11	1942	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	22.1697992773954	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAGTAGTGTCTTCTTAAC	NA	False	NA	0	True	AATAAA	-20	NA	77008959	76984042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_76985530_76986740_76986865_76999942_77000051_77008036_77008064_77008763
transcript_1235.known	chr1	-	5659	11	FSM	ENSMUSG00000026196.8	ENSMUST00000027393.8	5659	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	5.88642506110457	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATGAGACTCAACCTGA	NA	False	NA	32	True	NA	NA	NA	71142305	71066656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_71070012_71070517_71070616_71085836_71085930_71086798_71086932_71092771_71092881_71104637_71104811_71106266_71106348_71113701_71114640_71127267_71127411_71128629_71128687_71141826
transcript_12354.known	chr12	-	752	4	FSM	ENSMUSG00000059436.14	ENSMUST00000218640.2	752	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	20.0499376557634	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTCCTCCCTCACCTCT	NA	False	NA	NA	False	NA	NA	NA	77008799	76984964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_76985530_76986740_76986865_77008036_77008064_77008763
transcript_12355.known	chr12	-	1926	4	FSM	ENSMUSG00000059436.14	ENSMUST00000082136.7	1926	4	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	8.28653526310404	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCGGTAGTAGTGTCTTC	NA	False	NA	-5	True	AATAAA	-15	NA	77008975	76984047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_76985530_76986740_76986865_76999942_77000051_77008763
transcript_12356.known	chr12	+	2765	12	FSM	ENSMUSG00000021065.17	ENSMUST00000171770.10	2765	12	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	20.7412233753807	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTCCATTAGGAAGTTTT	NA	False	NA	-94	True	AATAAA	-36	NA	77284921	77522656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_77284974_77324134_77324230_77370618_77370712_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
transcript_12357.known	chr12	+	3358	12	FSM	ENSMUSG00000021065.17	ENSMUST00000062804.8	3358	12	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	14.8022781360346	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTTGTGTGGTGGCATCT	NA	False	NA	NA	False	TATAAA	-13	NA	77285838	77523112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_77286028_77324134_77324230_77370618_77370712_77378669_77379104_77411742_77411859_77411970_77412134_77440496_77440612_77459485_77459724_77495246_77495494_77496873_77497051_77510833_77510985_77521772
transcript_12358.nnic	chr12	+	1924	4	NNC	ENSMUSG00000112392.2	novel	661	2	NA	NA	-19	69710	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	2.86744175568088	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGGTTTCCTTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	77600101	77686193	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_77600570_77616271_77616542_77684209_77684294_77685091
transcript_1236.known	chr1	+	2845	16	FSM	ENSMUSG00000026192.14	ENSMUST00000027384.6	2845	16	0	0	0	0	multi-exon	TRUE	canonical	3	576	junction_4	38.3577313661217	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTTCTGTGCTGGCTGA	NA	False	NA	15	True	AATAAA	-15	NA	71596308	71618790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998_71610089_71612066_71612196_71615199_71615293_71615775_71615959_71616944_71617101_71617710
transcript_12360.nnic	chr12	+	1020	4	NNC	ENSMUSG00000112392.2	novel	661	2	NA	NA	189	86729	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	6.34209919681348	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTGGTCGTGTTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	77600309	77703212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_77600570_77616271_77616542_77684209_77684294_77702806
transcript_12361.known	chr12	+	3300	23	FSM	ENSMUSG00000047454.13	ENSMUST00000110388.10	3300	23	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_9	13.5066558431803	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTATTGTGCGGCCT	NA	False	NA	21	True	AATAAA	-24	NA	78273426	78731541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_78273616_78390125_78390205_78423133_78423192_78459114_78459208_78501530_78501626_78528072_78528140_78538811_78539085_78540723_78540832_78551390_78551526_78609629_78609673_78637307_78637446_78655918_78656012_78659745_78659802_78670077_78670198_78672907_78672967_78673880_78674035_78684231_78684354_78701580_78701669_78711264_78711339_78716597_78716663_78727064_78727169_78729491_78729589_78730551
transcript_12369.nic	chr12	+	1675	11	NIC	ENSMUSG00000021112.10	novel	5283	15	NA	NA	-61	-3607	combination_of_known_junctions	FALSE	canonical	3	104	junction_7	13.4833230325465	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAGGAAAAAGGTTTTAT	NA	False	NA	NA	False	NA	NA	NA	78795619	78873065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_78795720_78841018_78841108_78843639_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865977_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034
transcript_12373.known	chr12	+	5283	15	FSM	ENSMUSG00000021112.10	ENSMUST00000219197.2	5283	15	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	36.460840049879	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCACTGGACACTTTC	NA	False	NA	16	True	AATAAA	-25	NA	78795680	78887360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_78795720_78841018_78841108_78843639_78844165_78856525_78856735_78864014_78864093_78864398_78864546_78865960_78866140_78867581_78867660_78871462_78871647_78872630_78872703_78873034_78873107_78876426_78876595_78877626_78877830_78879138_78879250_78884231
transcript_12378.known	chr12	-	1583	9	FSM	ENSMUSG00000021118.8	ENSMUST00000021544.8	1583	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_6	8.60868021243675	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATGGTTCTTGTAGTTA	NA	False	NA	0	True	AATAAA	-21	NA	78953738	78935464	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_78936082_78936685_78936765_78938902_78938987_78940850_78940953_78941161_78941350_78941646_78941739_78942905_78943088_78946828_78946994_78953664
transcript_12380.known	chr12	-	2339	4	FSM	ENSMUSG00000021120.12	ENSMUST00000072154.9	2339	4	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	16.0485374896143	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGACTTGTTTTTTTAT	NA	False	NA	-1	True	AATAAA	-30	NA	79136425	79127437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_79129271_79130389_79130474_79132420_79132631_79136213
transcript_12383.known	chr12	-	2868	3	FSM	ENSMUSG00000021120.12	ENSMUST00000217998.2	2868	3	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	16.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAGAAAGGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	79136419	79128021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_79130474_79132420_79132631_79136213
transcript_12387.nnic	chr12	-	1306	7	NNC	ENSMUSG00000021124.14	novel	1490	6	NA	NA	26	71	at_least_one_novel_splicesite	FALSE	canonical	2	35	junction_5	321.69641485931	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTACATGTATAACATTAAT	NA	False	NA	-4	True	AATAAA	-23	NA	79219415	79203031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79213124_79213184_79218391_79218475_79218993
transcript_12388.known	chr12	-	1490	6	FSM	ENSMUSG00000021124.14	ENSMUST00000055262.13	1490	6	0	0	0	0	multi-exon	FALSE	canonical	3	652	junction_4	37.0534748707864	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTCATTTTCTGATTCGT	NA	False	NA	NA	False	NA	NA	NA	79219441	79202790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79213124_79213184_79218993
transcript_12389.known	chr12	-	1059	5	FSM	ENSMUSG00000021124.14	ENSMUST00000162789.9	1059	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	311.173183291877	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGAGTTTTACAGTTGTGAG	NA	False	NA	84	True	AATACA	-36	NA	79219222	79202943	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_79203346_79204621_79204684_79207182_79207357_79211721_79211914_79218993
transcript_1239.nic	chr1	+	1162	11	ISM	ENSMUSG00000026192.14	ENSMUST00000155769.8	1631	12	-9	2456	-9	-2053	5prime_fragment	FALSE	canonical	3	576	junction_4	25.6717743835521	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAAACTACTGTGTTCTTC	NA	False	NA	NA	False	AAAAAG	-6	NA	71596328	71610066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_71596434_71596655_71596783_71598384_71598462_71600047_71600115_71602917_71603007_71603564_71603717_71603969_71604127_71606972_71607099_71608121_71608230_71608998_71609085_71609998
transcript_12392.known	chr12	+	1428	8	FSM	ENSMUSG00000021125.7	ENSMUST00000021550.7	1428	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.728431359084683	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTCTTGTTGCTGTTCCT	9088	False	NA	NA	False	CATAAA	-28	NA	79177550	79203075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_79177755_79178614_79178688_79194361_79194540_79196642_79196803_79197505_79197601_79197726_79197832_79198695_79198833_79202599
transcript_12393.known	chr12	-	3262	7	FSM	ENSMUSG00000066441.15	ENSMUST00000161204.8	3262	7	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_5	13.7113092008021	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTATGGGGATATTGGA	NA	False	NA	-18	True	AATAAA	-40	NA	79239067	79221110	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_79223025_79229426_79229617_79231897_79232108_79233187_79233293_79235254_79235411_79235762_79235882_79238499
transcript_12397.known	chr12	+	1678	7	FSM	ENSMUSG00000021123.13	ENSMUST00000021548.12	1678	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	2.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGTGTCTTTTCTCAG	375	False	NA	NA	False	AATAAA	-19	NA	79255687	79269439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_79255883_79257614_79257734_79258161_79258318_79259426_79259532_79260317_79260528_79265449_79265640_79268736
transcript_12398.known	chr12	-	2990	2	FSM	ENSMUSG00000021127.8	ENSMUST00000021552.3	2990	2	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTGTCTATAGGTTTTT	9167	False	NA	92	True	AATAAA	-18	NA	80159787	80154527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_80157323_80159592
transcript_12401.known	chr12	+	3310	9	FSM	ENSMUSG00000032705.10	ENSMUST00000038185.10	3310	9	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_6	24.0724816959116	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGTGATTGTAAATGTG	2663	False	NA	22	True	AATAAA	-19	NA	80509868	80544896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_80510055_80522496_80522963_80527228_80527486_80531019_80531147_80536175_80536508_80537554_80537662_80537868_80538005_80539315_80539673_80543554
transcript_12409.known	chr12	+	5201	7	FSM	ENSMUSG00000048833.10	ENSMUST00000085245.7	5201	7	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	10.9455724179028	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTATGTGAGTGGCTCTTT	NA	False	NA	12	True	ATTAAA	-17	NA	80691012	80730111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_80691751_80709243_80709353_80713308_80713510_80719999_80720069_80722622_80722709_80723905_80724041_80726248
transcript_1241.known	chr1	+	1193	4	FSM	ENSMUSG00000073652.11	ENSMUST00000126516.3	1193	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	8.80656320908194	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCTATGTGAAGTTGCT	NA	False	NA	NA	False	AATAAA	-13	NA	71692493	71702002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_71692546_71696203_71696326_71699910_71700105_71701177
transcript_12415.known	chr12	-	506	5	FSM	ENSMUSG00000021131.15	ENSMUST00000166931.2	506	5	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_4	3763.79924411491	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTATGATAGCGATCCTG	NA	False	NA	NA	False	NA	NA	NA	80690606	80681130	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_80681302_80684263_80684385_80687730_80687819_80689562_80689620_80690537
transcript_12416.known	chr12	+	956	2	FSM	ENSMUSG00000066438.7	ENSMUST00000153762.2	956	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGACTGAATAGTTCCTCTG	NA	False	NA	NA	False	GATAAA	-15	NA	80768505	80769684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_80768870_80769092
transcript_12417.known	chr12	-	1118	3	FSM	ENSMUSG00000112880.2	ENSMUST00000219062.2	1118	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	3	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAACACTAACCAAAAC	NA	False	NA	NA	False	NA	NA	NA	80992170	80989446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_80989717_80989815_80990004_80991510
transcript_1242.known	chr1	+	191	1	FSM	ENSMUSG00000119668.1	ENSMUST00000101806.4	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGGAATAATATTGGTTA	NA	False	NA	NA	False	NA	NA	NA	72276104	72276295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_72276100_72276300
transcript_12439.known	chr12	+	1491	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110352.10	1491	8	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_1	564.545762863691	1109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992305	80997277	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_80992443_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
transcript_12447.known	chr12	+	1568	8	FSM	ENSMUSG00000021134.18	ENSMUST00000110356.3	1568	8	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_1	476.276244656911	469	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992358	80997277	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_80992573_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80994640_80995868_80995943_80996267_80996379_80996493
transcript_1245.known	chr1	-	1186	8	FSM	ENSMUSG00000026189.14	ENSMUST00000027381.13	1186	8	0	0	0	0	multi-exon	FALSE	canonical	1	70	junction_5	66.3254191429636	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTTATCTTTTAAGGATT	NA	False	NA	-6	True	AATAAA	-19	NA	72323473	72298330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_72298593_72301110_72301223_72306565_72306677_72309435_72309533_72314044_72314127_72315324_72315491_72316445_72316580_72323251
transcript_12460.known	chr12	+	2720	7	FSM	ENSMUSG00000021134.18	ENSMUST00000153056.8	2720	7	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_1	608.09467921442	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTTTGGTCTGTTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	80992305	80997277	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_80992443_80993349_80993495_80994084_80994156_80994269_80994369_80994569_80995943_80996267_80996379_80996493
transcript_12477.known	chr12	+	489	2	FSM	ENSMUSG00000021134.18	ENSMUST00000151968.2	489	2	0	0	0	0	multi-exon	FALSE	canonical	3	1278	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGAAGTTAAAGTAACTGC	NA	False	NA	NA	False	NA	NA	NA	80992352	80993744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_80992447_80993349
transcript_12478.known	chr12	+	538	2	FSM	ENSMUSG00000021134.18	ENSMUST00000152662.2	538	2	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAGAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80992307	80993622	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_80992573_80993349
transcript_1248.nnic	chr1	-	967	6	NIC	ENSMUSG00000026189.14	novel	1186	8	NA	NA	-29	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_4	98.9432160382914	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGTTATCTTTTAAGGATT	NA	False	NA	-6	True	AATAAA	-19	NA	72323502	72298330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_72298593_72301110_72301223_72306565_72306677_72309435_72309533_72316445_72316580_72323251
transcript_12483.nnic	chr12	+	3249	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7419	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	58.4429327540028	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81066162	81233188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_81066267_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197392_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
transcript_12486.nnic	chr12	+	3216	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7419	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	46.2909728420852	57	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81066162	81233188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_81066267_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
transcript_12489.nnic	chr12	+	3196	13	NNC	ENSMUSG00000021136.14	novel	3496	13	NA	NA	-7386	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_1	44.458470009162	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81066195	81233188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_81066280_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
transcript_12490.known	chr12	+	3496	13	FSM	ENSMUSG00000021136.14	ENSMUST00000110347.9	3496	13	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	48.9003379901975	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTGCCTCTTTCTTTGG	NA	False	NA	17	True	AATAAA	-19	NA	81073581	81233188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_81073933_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197392_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
transcript_12491.known	chr12	+	3439	13	FSM	ENSMUSG00000021136.14	ENSMUST00000021564.11	3439	13	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	31.9699294476683	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTGGTGCCTCTTTCT	NA	False	NA	13	True	AATAAA	-15	NA	81073601	81233184	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_81073933_81151380_81151547_81152672_81152786_81182549_81182650_81184738_81184787_81197425_81197483_81199446_81199528_81214280_81214474_81215002_81215086_81216959_81217066_81226252_81226498_81230761_81230816_81231322
transcript_12496.known	chr12	-	1043	6	FSM	ENSMUSG00000021139.18	ENSMUST00000164386.8	1043	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	83.1899032335054	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGAAATTGCTCTGTGTG	NA	False	NA	NA	False	AATAAA	-17	NA	81579679	81405633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
transcript_12497.nnic	chr12	-	652	6	NIC	ENSMUSG00000021139.18	novel	2284	6	NA	NA	-15	-1490	combination_of_known_splicesites	FALSE	canonical	3	31	junction_1	113.684827483706	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTATGCTTTTCAGTCT	NA	False	NA	-6	True	ATTAAA	-14	NA	81579694	81518866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_81518946_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
transcript_12498.known	chr12	-	2284	6	FSM	ENSMUSG00000021139.18	ENSMUST00000166664.2	2284	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	88.6715286887511	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATTCAACAGTGTTCAAAG	NA	False	NA	NA	False	NA	NA	NA	81579656	81517376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_81519126_81521360_81521424_81527704_81527777_81551317_81551414_81557602_81557740_81579489
transcript_12499.nic	chr12	-	742	5	NIC	ENSMUSG00000021139.18	novel	1043	6	NA	NA	0	-164	combination_of_known_junctions	FALSE	canonical	3	34	junction_4	124.884696820707	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTTCTCAGTGTTCCAT	NA	False	NA	-44	True	AATAAA	-21	NA	81579679	81405797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_81406119_81521360_81521424_81527704_81527777_81551317_81551414_81579489
transcript_125.known	SIRV5	+	2474	18	FSM	SIRV5A	SIRV510	2474	18	0	0	0	0	multi-exon	FALSE	canonical	3	1532	junction_17	2924.81329602575	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAGTAACCTTGGTAACT	NA	False	NA	NA	False	AGTAAA	-11	NA	1028	11867	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858_10992_11133
transcript_12501.nic	chr12	-	680	5	NIC	ENSMUSG00000021139.18	novel	2284	6	NA	NA	0	-1490	combination_of_known_junctions	FALSE	canonical	3	34	junction_4	125.893556229062	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTATGCTTTTCAGTCT	NA	False	NA	-6	True	ATTAAA	-14	NA	81579679	81518866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_81519126_81521360_81521424_81527704_81527777_81551317_81551414_81579489
transcript_12505.known	chr12	-	668	4	FSM	ENSMUSG00000091803.8	ENSMUST00000110340.9	668	4	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	77.5127229699888	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGTTCTCAGTGTTCC	998	False	NA	-46	True	AATAAA	-19	NA	81531884	81405799	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_81406119_81521360_81521424_81527704_81527777_81531670
transcript_12507.known	chr12	-	431	4	FSM	ENSMUSG00000091803.8	ENSMUST00000168463.8	431	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	143.25501736414	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTATGCTTTTCAGTCT	995	False	NA	-6	True	ATTAAA	-14	NA	81531887	81518866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_81518946_81521360_81521424_81527704_81527777_81531670
transcript_12508.known	chr12	-	2007	4	FSM	ENSMUSG00000091803.8	ENSMUST00000002757.11	2007	4	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	95.530099968544	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAACTAAAGACAAAGA	988	False	NA	NA	False	NA	NA	NA	81531894	81517477	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_81519126_81521360_81521424_81527704_81527777_81531670
transcript_12510.known	chr12	-	685	3	FSM	ENSMUSG00000091803.8	ENSMUST00000169124.2	685	3	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_2	58.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCTAAGAATTATTTTAAA	994	False	NA	NA	False	NA	NA	NA	81531888	81521028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_81521424_81527704_81527777_81531670
transcript_12511.known	chr12	-	4655	4	FSM	ENSMUSG00000090935.11	ENSMUST00000163402.8	4655	4	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_1	30.6920185064456	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATAATGGTACATGTCT	NA	False	NA	NA	False	NA	NA	NA	81579685	81544714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_81548941_81551317_81551414_81557602_81557740_81579489
transcript_12516.known	chr12	-	3305	3	FSM	ENSMUSG00000090935.11	ENSMUST00000164431.2	3305	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	56.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTTGTTTTTGTTTCCTT	NA	False	NA	-6	True	AATAGA	-12	NA	81579673	81545915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_81548941_81551317_81551414_81579489
transcript_12520.known	chr12	-	1003	8	FSM	ENSMUSG00000002679.15	ENSMUST00000002756.14	1003	8	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_7	64.9976451692753	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCATCATGCCTTTCCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	81641732	81620338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_81620735_81621298_81621327_81626343_81626460_81628574_81628684_81629406_81629490_81635756_81635849_81638027_81638188_81641713
transcript_12522.known	chr12	-	897	7	FSM	ENSMUSG00000002679.15	ENSMUST00000161598.8	897	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	187.349717551606	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGCCTTTCCCTTGTCTC	NA	False	NA	-2	True	AATAAA	-22	NA	81641737	81620333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_81620735_81621298_81621327_81628574_81628684_81629406_81629490_81635756_81635849_81638027_81638188_81641713
transcript_12524.known	chr12	-	4564	11	FSM	ENSMUSG00000042724.9	ENSMUST00000035987.9	4564	11	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	4.27083130081252	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGCCGTGAGGCAGTAG	NA	False	NA	NA	False	AGTAAA	-20	NA	81827949	81767783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_81769298_81770837_81771651_81772495_81772609_81776456_81776611_81777310_81777434_81778765_81779007_81780853_81781030_81781843_81781993_81790571_81790753_81819453_81819868_81827263
transcript_12526.known	chr12	+	2008	14	FSM	ENSMUSG00000021222.10	ENSMUST00000021645.9	2008	14	0	0	0	0	multi-exon	TRUE	canonical	3	216	junction_9	23.528907060372	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTCTAATTTTGCCAAA	NA	False	NA	10	True	NA	NA	NA	83567239	83588689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_83567392_83572917_83573015_83575941_83576043_83576750_83576909_83577597_83577681_83579052_83579156_83580640_83580785_83581633_83581684_83582673_83582754_83584486_83584589_83584717_83584816_83586081_83586256_83586562_83586678_83588138
transcript_12530.known	chr12	-	4036	12	FSM	ENSMUSG00000042628.9	ENSMUST00000048319.6	4036	12	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_11	24.5928834697229	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGCCATCGTATGGATC	NA	False	NA	NA	False	TTTAAA	-3	NA	83643996	83593622	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_83594890_83597594_83597709_83598239_83598421_83599149_83599321_83601716_83601835_83601938_83602037_83602374_83602484_83605387_83605495_83615622_83615838_83621405_83621911_83641171_83642097_83643770
transcript_1254.known	chr1	-	932	7	FSM	ENSMUSG00000026189.14	ENSMUST00000097698.5	932	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	105.091494528445	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AATGAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-45	NA	72323418	72306154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_72306330_72306565_72306677_72309435_72309533_72314044_72314127_72315324_72315491_72316445_72316580_72323251
transcript_12543.known	chr12	+	4226	19	FSM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	109.211215111695	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTGTGTAGTGCATATA	3981	False	NA	13	True	AATAAA	-13	NA	83679025	83729897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112_83721438_83721817_83722093_83722855_83722955_83724628_83724677_83728276
transcript_12550.nic	chr12	+	1994	15	ISM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	-57	8706	-57	0	5prime_fragment	FALSE	canonical	3	212	junction_1	95.3883843953289	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAAAAGAAGAAAAACGA	3924	False	NA	NA	False	NA	NA	NA	83678968	83721191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192_83715283_83718681_83718756_83719507_83719659_83721112
transcript_12559.nic	chr12	+	1665	12	ISM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	-57	14640	-57	0	5prime_fragment	FALSE	canonical	3	212	junction_1	83.4346381485244	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAGAAGAAAGAAGAAGAG	3924	False	NA	NA	False	AAGAAA	-30	NA	83678968	83715257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752_83711034_83714865_83715083_83715192
transcript_12560.nic	chr12	+	1301	12	NIC	ENSMUSG00000010608.16	novel	1116	11	NA	NA	-53	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_2	152.80430957533	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAGAAAGACA	3928	False	NA	-11	True	NA	NA	NA	83678972	83710773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_83679192_83685901_83685966_83689175_83689294_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752
transcript_12565.nnic	chr12	+	1197	11	NNC	ENSMUSG00000010608.16	novel	4226	19	NA	NA	-57	12	at_least_one_novel_splicesite	FALSE	canonical	3	93	junction_10	128.545089365561	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGACAGGAAATTGAGAA	3924	False	NA	1	True	NA	NA	NA	83678968	83710785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83707980_83708043_83710752
transcript_12569.nic	chr12	+	1183	11	NIC	ENSMUSG00000010608.16	novel	1116	11	NA	NA	-53	0	combination_of_known_junctions	FALSE	canonical	3	90	junction_2	131.960600180508	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAGAAAGACA	3928	False	NA	-11	True	NA	NA	NA	83678972	83710773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752
transcript_12573.nic	chr12	+	1123	10	ISM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	-57	19124	-57	0	5prime_fragment	FALSE	canonical	3	212	junction_1	85.0034131486117	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAGAAAGACA	3924	False	NA	-11	True	NA	NA	NA	83678968	83710773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368_83707453_83710752
transcript_12574.nic	chr12	+	1162	10	NIC	ENSMUSG00000010608.16	novel	1116	11	NA	NA	-53	1094	combination_of_known_junctions	FALSE	canonical	3	90	junction_2	135.120613700921	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTATTCTTGATTTTTCA	3928	False	NA	NA	False	NA	NA	NA	83678972	83707452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368
transcript_12575.nic	chr12	+	1102	9	ISM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	-57	22445	-57	1094	5prime_fragment	FALSE	canonical	3	212	junction_1	75.2462623656484	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTATTCTTGATTTTTCA	3924	False	NA	NA	False	NA	NA	NA	83678968	83707452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196_83706383_83707081_83707136_83707368
transcript_12577.known	chr12	+	788	8	FSM	ENSMUSG00000010608.16	ENSMUST00000182036.8	788	8	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_2	140.669245873765	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAGATGAAGAAACAAAGCG	4020	False	NA	NA	False	NA	NA	NA	83679064	83706238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_83679192_83685901_83685966_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196
transcript_12579.nic	chr12	+	935	7	ISM	ENSMUSG00000010608.16	ENSMUST00000048155.16	4226	19	-57	23544	-57	-5	5prime_fragment	FALSE	canonical	3	212	junction_1	78.5509388868141	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAGAAAAAGGAAAAG	3924	False	NA	NA	False	ACTAAA	-33	NA	83678968	83706353	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_83679192_83689402_83689524_83691172_83691223_83692910_83693079_83694971_83695030_83698060_83698219_83706196
transcript_12581.known	chr12	+	2690	12	FSM	ENSMUSG00000019969.15	ENSMUST00000041806.13	2690	12	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_9	21.5122490573192	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCTCTCTGTCCTGGCTGG	3345	False	NA	9	True	ATTAAA	-20	NA	83734925	83781869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_83735068_83746128_83746196_83746285_83746426_83759077_83759329_83761537_83761680_83769764_83769833_83771269_83771491_83774999_83775099_83775471_83775559_83777312_83777487_83778447_83778567_83780689
transcript_12587.nic	chr12	-	2791	12	NIC	ENSMUSG00000021224.16	novel	3468	13	NA	NA	13	565	combination_of_known_junctions	FALSE	canonical	3	81	junction_8	18.4936888944748	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TATATATCAAAAAGCCAAAA	NA	False	NA	NA	False	NA	NA	NA	83968695	83841647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_83842929_83843970_83844118_83846281_83846432_83847786_83848081_83850553_83850759_83854874_83855016_83858059_83858135_83872032_83872066_83878695_83878771_83888991_83889133_83923441_83923587_83968591
transcript_12589.known	chr12	+	5727	8	FSM	ENSMUSG00000042523.13	ENSMUST00000123491.8	5727	8	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	4.44007721940573	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTCCTTTGGTTACTGTA	9912	False	NA	NA	False	AATAAA	-24	NA	84161139	84190291	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84161174_84168056_84168096_84171248_84171359_84173735_84173792_84178105_84178162_84182340_84182468_84183270_84183412_84185127
transcript_12594.known	chr12	+	2597	12	FSM	ENSMUSG00000042472.12	ENSMUST00000045931.12	2597	12	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_3	18.7929123266993	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTTTGGCTCTTGTTTT	1583	False	NA	11	True	AATAAA	-16	NA	84363625	84390497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
transcript_12596.known	chr12	+	2284	12	FSM	ENSMUSG00000042472.12	ENSMUST00000222606.2	2284	12	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	61.2357590123466	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACCTCTTTGGCTCTTGT	1861	False	NA	8	True	AATAAA	-13	NA	84363903	84390494	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372376_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
transcript_12599.known	chr12	+	1386	11	FSM	ENSMUSG00000072946.13	ENSMUST00000123693.2	1386	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	94.1679881913169	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTTCTTGATTCTAGTGT	NA	False	NA	28	True	TTTAAA	-19	NA	84332186	84360876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84343001_84343131_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
transcript_1260.known	chr1	+	2549	21	FSM	ENSMUSG00000026187.10	ENSMUST00000027379.10	2549	21	0	0	0	0	multi-exon	FALSE	canonical	3	464	junction_5	74.8852455427636	427	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTGTGTGAAGTCTCA	322	False	NA	22	True	TATAAA	-28	NA	72346585	72434111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_72346727_72349593_72349708_72351566_72351751_72353312_72353362_72354617_72354741_72358157_72358350_72364232_72364348_72365374_72365514_72369084_72369198_72373794_72373858_72378118_72378257_72379147_72379239_72382167_72382302_72385386_72385584_72393401_72393496_72395975_72396046_72420777_72420888_72422516_72422614_72422860_72422929_72433054_72433127_72433866
transcript_12606.known	chr12	+	3168	10	FSM	ENSMUSG00000072946.13	ENSMUST00000123614.8	3168	10	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_5	23.1948270094864	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATGACCACTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	84332005	84362606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
transcript_12609.known	chr12	+	2073	10	FSM	ENSMUSG00000072946.13	ENSMUST00000146377.8	2073	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	74.1401742114137	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGGTGAGAAGCAGTTAA	NA	False	NA	NA	False	AATAAA	-14	NA	84332179	84361628	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84332308_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692_84357733_84360710
transcript_12612.nic	chr12	+	2015	10	NIC	ENSMUSG00000042472.12	novel	2597	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	65.7317782101372	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTCTTTGGCTCTTGTTTT	1849	False	NA	11	True	AATAAA	-16	NA	84363891	84390497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_84363949_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84384389_84384516_84385415_84385557_84386875_84387004_84389768
transcript_12614.nic	chr12	+	1260	9	ISM	ENSMUSG00000072946.13	ENSMUST00000123614.8	3168	10	50	4836	50	1043	5prime_fragment	FALSE	canonical	3	204	junction_5	23.3492505233037	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATGGAGTGGGTTTTCTT	NA	False	NA	13	True	AATAAA	-25	NA	84332055	84357770	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357692
transcript_12621.known	chr12	+	1569	9	FSM	ENSMUSG00000042472.12	ENSMUST00000220931.2	1569	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	68.4233147399335	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGTTGGTTTTTGTT	1858	False	NA	NA	False	AATAAA	-14	NA	84363900	84382212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84363949_84368585_84368766_84369657_84369794_84372344_84372564_84374052_84374245_84376575_84376727_84378408_84378591_84379708_84379799_84381841
transcript_12625.known	chr12	+	656	4	FSM	ENSMUSG00000072946.13	ENSMUST00000128158.8	656	4	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_3	9.0921211313239	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGTCTTTTTTTACTT	NA	False	NA	NA	False	TATAAA	-45	NA	84332154	84345140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784
transcript_12627.known	chr12	+	1286	10	FSM	ENSMUSG00000072946.13	ENSMUST00000135001.8	1286	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	79.8639274865708	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTTCTTGATTCTAGTGT	NA	False	NA	28	True	TTTAAA	-19	NA	84332173	84360876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84332251_84339057_84339143_84341990_84342110_84344784_84344977_84349010_84349182_84352699_84352910_84354549_84354672_84355118_84355207_84357676_84357733_84360710
transcript_12631.nic	chr12	+	1542	12	NIC	ENSMUSG00000021235.14	novel	1602	12	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_5	62.6245535772017	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTTGTGTCTCTTTTCC	NA	False	NA	9	True	AATAAA	-9	NA	84408761	84420562	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417129_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
transcript_12632.known	chr12	+	1583	12	FSM	ENSMUSG00000021235.14	ENSMUST00000152913.8	1583	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	67.4165538687435	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTCTTTTCCTCTT	NA	False	NA	13	True	AATAAA	-13	NA	84408803	84420566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418177_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
transcript_12633.nnic	chr12	+	1491	12	NNC	ENSMUSG00000021235.14	novel	1602	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	68.1101441456204	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTTGTGTCTCTTTTCC	NA	False	NA	9	True	AATAAA	-9	NA	84408814	84420562	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419086_84419192_84419309_84419424_84419592_84420452
transcript_12634.known	chr12	+	1602	12	FSM	ENSMUSG00000021235.14	ENSMUST00000021661.13	1602	12	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_6	16.3656564409681	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTTTTCCTCTTCTGA	NA	False	NA	17	True	AATAAA	-17	NA	84408741	84420570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84417881_84417945_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
transcript_12635.nnic	chr12	+	1511	11	NIC	ENSMUSG00000021235.14	novel	1602	12	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_6	69.5125887879311	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTTGTGTCTCTTTTCC	NA	False	NA	9	True	AATAAA	-9	NA	84408761	84420562	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_84409012_84413658_84413794_84414916_84414976_84415359_84415484_84417029_84417161_84417697_84417806_84418224_84418333_84418912_84419116_84419192_84419309_84419424_84419592_84420452
transcript_12648.known	chr12	-	4972	16	FSM	ENSMUSG00000021236.17	ENSMUST00000110272.9	4972	16	0	0	0	0	multi-exon	TRUE	canonical	3	43	junction_8	4.47014789713072	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTTTCCTTTGGGTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	84455803	84420648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_84424155_84425953_84426070_84427094_84427152_84429005_84429147_84430992_84431095_84431921_84431984_84432570_84432651_84432911_84433001_84433511_84433548_84433753_84433830_84439179_84439324_84441397_84441478_84443452_84443733_84446113_84446187_84452179_84452250_84455743
transcript_12651.known	chr12	-	4881	15	FSM	ENSMUSG00000021236.17	ENSMUST00000120942.8	4881	15	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_13	11.8983792413685	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATAGTTTTCCTTTGGGTT	NA	False	NA	NA	False	AATAAA	-16	NA	84455788	84420651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_84424155_84425953_84426070_84427094_84427152_84429005_84429147_84430992_84431095_84431921_84431984_84432570_84432651_84432911_84433001_84433511_84433548_84433753_84433830_84439179_84439324_84441397_84441478_84443452_84443733_84452179_84452250_84455743
transcript_12653.known	chr12	-	3399	12	FSM	ENSMUSG00000021238.12	ENSMUST00000085192.7	3399	12	0	0	0	0	multi-exon	FALSE	canonical	2	131	junction_11	16.2917613413438	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTCTTTTCCTTCTTTTG	NA	False	NA	NA	False	AATAAA	-33	NA	84497777	84477490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_84479323_84480205_84480305_84480629_84480810_84483101_84483284_84483502_84483693_84484748_84484871_84486186_84486490_84487008_84487088_84488536_84488699_84488844_84488920_84490502_84490563_84497662
transcript_12656.known	chr12	+	1383	1	FSM	ENSMUSG00000098134.2	ENSMUST00000183146.2	1383	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	208	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCCTGGTGTGATCTTTC	NA	False	NA	10	True	AATAAA	-19	NA	84463969	84465352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84464000_84465400
transcript_12657.known	chr12	-	2309	19	FSM	ENSMUSG00000021240.7	ENSMUST00000021666.6	2309	19	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_18	37.2765772285566	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAAAAAGAAAACTGGT	NA	False	NA	NA	False	NA	NA	NA	84664144	84649426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84661850_84661979_84662099_84662219_84664056
transcript_12661.nnic	chr12	-	2195	17	NIC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_16	51.6547659345195	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATAGACTGATTTTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	84664157	84649306	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678_84660819_84664056
transcript_12662.nic	chr12	-	2208	16	ISM	ENSMUSG00000021240.7	ENSMUST00000021666.6	2309	19	3212	-120	1229	0	3prime_fragment	FALSE	canonical	3	177	junction_14	24.1887025971492	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATAGACTGATTTTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	84660932	84649306	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678
transcript_12665.nic	chr12	-	2088	16	ISM	ENSMUSG00000021240.7	ENSMUST00000021666.6	2309	19	3212	0	1229	0	3prime_fragment	FALSE	canonical	3	177	junction_14	24.1887025971492	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAAAAAGAAAACTGGT	NA	False	NA	NA	False	NA	NA	NA	84660932	84649426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84659553_84659671_84660678
transcript_12666.nnic	chr12	-	2088	15	NIC	ENSMUSG00000021240.7	novel	2309	19	NA	NA	1232	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_14	59.0086901244561	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAATAGACTGATTTTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	84660929	84649306	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_84649934_84650067_84650184_84650722_84650800_84651106_84651160_84651754_84651805_84652121_84652159_84652645_84652738_84652873_84653083_84655343_84655434_84655579_84655672_84655748_84655871_84656152_84656248_84658494_84658546_84659098_84659225_84660678
transcript_12672.known	chr12	-	3299	4	FSM	ENSMUSG00000021242.10	ENSMUST00000021668.10	3299	4	0	0	0	0	multi-exon	FALSE	canonical	3	2850	junction_3	124.194292228839	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATCCTGGATGCCTGAT	NA	False	NA	NA	False	AATAAA	-21	NA	84819926	84801335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_84803987_84807493_84807667_84812050_84812159_84819559
transcript_12676.known	chr12	+	727	4	FSM	ENSMUSG00000021241.8	ENSMUST00000222982.2	727	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	90.0900783783776	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATTTGGAGTTAACCTC	NA	False	NA	-69	True	NA	NA	NA	84820078	84821778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84820146_84820369_84820452_84820566_84820683_84821316
transcript_12677.nnic	chr12	+	805	4	NNC	ENSMUSG00000021241.8	novel	883	4	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	103.002696836323	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	15	True	TATAAA	-18	NA	84820029	84821862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_84820070_84820348_84820452_84820566_84820683_84821316
transcript_12678.known	chr12	+	883	4	FSM	ENSMUSG00000021241.8	ENSMUST00000021667.7	883	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	133.217449641137	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTTCTTATCGTGTTTTC	NA	False	NA	12	True	TATAAA	-15	NA	84820024	84821859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84820146_84820348_84820452_84820566_84820683_84821316
transcript_12680.known	chr12	+	374	3	FSM	ENSMUSG00000021241.8	ENSMUST00000222449.2	374	3	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	24	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCACCACTGCACCAGTG	NA	False	NA	NA	False	NA	NA	NA	84820051	84821514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84820146_84820369_84820452_84821316
transcript_12683.known	chr12	+	485	3	FSM	ENSMUSG00000021241.8	ENSMUST00000222022.2	485	3	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_2	92.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTTAACTCTTGGCCGAA	NA	False	NA	NA	False	NA	NA	NA	84820098	84821651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84820146_84820348_84820452_84821316
transcript_12684.nic	chr12	+	996	3	NIC	ENSMUSG00000021241.8	novel	883	4	NA	NA	5	0	intron_retention	FALSE	canonical	0	0	junction_2	159.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	15	True	TATAAA	-18	NA	84820029	84821862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_84820146_84820348_84820683_84821316
transcript_12686.known	chr12	+	1588	2	FSM	ENSMUSG00000021241.8	ENSMUST00000222166.2	1588	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTTATCGTGTTTTCAAT	NA	False	NA	15	True	TATAAA	-18	NA	84820050	84821862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84820146_84820369
transcript_12687.known	chr12	+	843	2	FSM	ENSMUSG00000021241.8	ENSMUST00000223089.2	843	2	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTGGACTAGTTTCAGTC	NA	False	NA	NA	False	AAGAAA	-2	NA	84820064	84821110	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_84820146_84820348
transcript_12690.known	chr12	+	749	8	FSM	ENSMUSG00000021243.15	ENSMUST00000021669.15	749	8	0	0	0	0	multi-exon	FALSE	canonical	3	1900	junction_1	151.77601649692	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTTGTCTCAATTCTTA	4629	False	NA	23	True	ATTAAA	-25	NA	85017670	85030077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_85017740_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
transcript_12692.known	chr12	+	731	8	FSM	ENSMUSG00000021243.15	ENSMUST00000171040.2	731	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	770.463443887734	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAAAATGCTATGTTG	4713	False	NA	11	True	ATTAAA	-13	NA	85017754	85030065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_85017818_85017988_85018057_85019763_85019836_85020864_85021014_85026168_85026242_85027288_85027377_85029009_85029105_85029942
transcript_12693.known	chr12	+	617	3	FSM	ENSMUSG00000021243.15	ENSMUST00000172241.2	617	3	0	0	0	0	multi-exon	FALSE	canonical	3	1987	junction_2	95	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGCTATGTTGTCTCAA	NA	False	NA	17	True	ATTAAA	-19	NA	85026983	85030071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_85027377_85029009_85029105_85029942
transcript_12695.known	chr12	+	2764	15	FSM	ENSMUSG00000004789.11	ENSMUST00000053811.10	2764	15	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_7	23.9123612470237	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTCCGGGATCTGTGCTC	NA	False	NA	20	True	ATTAAA	-20	NA	85157606	85180862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
transcript_12698.nic	chr12	+	2879	14	NIC	ENSMUSG00000004789.11	novel	2764	15	NA	NA	-3	0	intron_retention	FALSE	canonical	3	294	junction_6	23.4056079862733	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTCCGGGATCTGTGCTC	NA	False	NA	20	True	ATTAAA	-20	NA	85157603	85180862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392
transcript_12699.nic	chr12	+	2726	2	ISM	ENSMUSG00000004789.11	ENSMUST00000053811.10	2764	15	-3	19995	-3	16	5prime_fragment	FALSE	canonical	3	359	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAAACATAAATAAT	NA	False	NA	NA	False	AATAGA	-27	NA	85157603	85160867	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_85157734_85158271
transcript_127.known	SIRV5	+	1984	18	FSM	SIRV5A	SIRV502	1984	18	0	0	0	0	multi-exon	FALSE	canonical	3	681	junction_4	3430.92271124242	598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTTTACCGCCAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	1019	10989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2489_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
transcript_1270.known	chr1	+	3059	17	FSM	ENSMUSG00000039354.17	ENSMUST00000047615.15	3059	17	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_6	11.1563813017483	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTATTCCGTTTGTCAC	NA	False	NA	9	True	AATAAA	-16	NA	72622409	72672293	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_72622598_72624796_72625564_72626209_72626261_72630221_72630435_72630983_72631035_72634946_72635134_72636537_72636689_72637929_72638089_72640527_72640594_72650453_72650595_72651967_72652184_72655666_72655738_72659190_72659294_72665621_72665805_72667259_72667361_72668533_72668631_72671979
transcript_12700.known	chr12	+	2259	16	FSM	ENSMUSG00000004789.11	ENSMUST00000221357.2	2259	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_15	88.2275844997848	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTTCTGGAGTAGCTGT	NA	False	NA	NA	False	TTTAAA	-10	NA	85157610	85181619	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_85157734_85158271_85158306_85162046_85162096_85165132_85165189_85165300_85165376_85165555_85165612_85166006_85166119_85168760_85168914_85169553_85169631_85170547_85170646_85175084_85175216_85176565_85176640_85177233_85177318_85177670_85177839_85179392_85179606_85180863
transcript_12702.known	chr12	-	2881	11	FSM	ENSMUSG00000019235.10	ENSMUST00000221972.2	2881	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	69.4942443659905	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCTTTGCATCATTAATA	NA	False	NA	-2	True	AATAAA	-17	NA	85198038	85182022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_85183258_85183519_85183616_85185204_85185288_85185426_85185517_85185851_85186443_85187117_85187251_85187602_85187651_85193636_85193730_85194519_85194645_85196397_85196683_85197936
transcript_1271.known	chr1	+	1227	3	FSM	ENSMUSG00000110712.2	ENSMUST00000211909.2	1227	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTCAAGAATCATTTCATG	NA	False	NA	NA	False	AATAAA	-21	NA	72680401	72682122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_72681432_72681602_72681647_72681969
transcript_12710.known	chr12	+	1605	8	FSM	ENSMUSG00000004788.12	ENSMUST00000004910.12	1605	8	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_7	13.1661284657074	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTGGAAAGGGCCCCAAAC	NA	False	NA	NA	False	AATAAA	-21	NA	85266254	85273402	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_85266499_85266595_85266717_85266870_85267020_85268250_85268415_85269517_85269614_85270154_85270293_85271328_85271396_85272776
transcript_12713.known	chr12	-	648	3	FSM	ENSMUSG00000008822.16	ENSMUST00000008966.13	648	3	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_2	28.5	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGCTTCCCCCCCTCCCT	4291	False	NA	0	True	AATAAA	-24	NA	85327209	85319171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_85319602_85326764_85326857_85327083
transcript_12715.known	chr12	-	735	2	FSM	ENSMUSG00000008822.16	ENSMUST00000117138.3	735	2	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTATGCTTACATTGCTTC	4420	False	NA	-11	True	AATAAA	-13	NA	85327080	85319182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_85319602_85326764
transcript_12716.known	chr12	-	448	3	FSM	ENSMUSG00000008822.16	ENSMUST00000065913.8	448	3	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_1	185.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTCCTTTGGCGGCTGCC	4308	False	NA	NA	False	NA	NA	NA	85327192	85325666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_85325914_85326764_85326857_85327083
transcript_12717.known	chr12	-	5386	22	FSM	ENSMUSG00000034290.10	ENSMUST00000040992.8	5386	22	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_16	12.716336556552	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGGGCTGTGTTTGAGTA	7957	False	NA	-3	True	AATAAA	-15	NA	85386136	85346287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_85348701_85350240_85350448_85352236_85352399_85352910_85353141_85354703_85354764_85355592_85355764_85357160_85357323_85358111_85358221_85359719_85359876_85360955_85361003_85361175_85361377_85362353_85362499_85367487_85367681_85368802_85368854_85372081_85372147_85374162_85374274_85376617_85376750_85379274_85379381_85380759_85380831_85381371_85381428_85383081_85383260_85385776
transcript_12719.known	chr12	-	1482	5	FSM	ENSMUSG00000021248.10	ENSMUST00000040766.9	1482	5	0	0	0	0	multi-exon	FALSE	canonical	3	1293	junction_2	34.3110769285955	1000	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTCCTTGTGTATGTGT	8464	False	NA	-5	True	ATTAAA	-20	NA	85421621	85389561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_85390324_85390998_85391126_85397576_85397651_85401568_85401681_85421214
transcript_1272.known	chr1	+	1238	2	FSM	ENSMUSG00000110712.2	ENSMUST00000212057.2	1238	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTCAAGAATCATTTCATG	NA	False	NA	NA	False	AATAAA	-21	NA	72680346	72682122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_72681432_72681969
transcript_12721.known	chr12	+	1645	4	FSM	ENSMUSG00000034271.17	ENSMUST00000177587.9	1645	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	88.8606899715629	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTCGAGTGGTGTCTG	6250	False	NA	34	True	AGTAAA	-20	NA	85645800	85686652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_85646002_85654906_85655140_85678418_85678524_85685546
transcript_12722.known	chr12	+	955	3	FSM	ENSMUSG00000034266.7	ENSMUST00000040536.6	955	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGAAAGCGGCTTCCC	NA	False	NA	NA	False	AATAAA	-18	NA	85733442	85755861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_85733748_85736041_85736147_85755316
transcript_12723.known	chr12	+	3435	10	FSM	ENSMUSG00000034258.5	ENSMUST00000040461.4	3435	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	3.8522079607466	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCCTCATCATTTAGTG	NA	False	NA	NA	False	AATAAA	-14	NA	85793312	85860359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_85794364_85829730_85829873_85832861_85833003_85842948_85843017_85845271_85845376_85849908_85850020_85851141_85851248_85851369_85851482_85851969_85852026_85858815
transcript_12728.known	chr12	-	1169	5	FSM	ENSMUSG00000021252.12	ENSMUST00000021676.12	1169	5	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_4	65.9104506129339	587	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCGTCTGTGTACTTTGGC	NA	False	NA	-4	True	AATAAA	-21	NA	85871296	85862221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_85862968_85863089_85863209_85866252_85866344_85868861_85869023_85871244
transcript_12730.nic	chr12	+	1183	5	ISM	ENSMUSG00000012609.20	ENSMUST00000176008.8	5482	10	-275	24373	-4	1	5prime_fragment	FALSE	canonical	3	30	junction_4	10.1334840997556	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTAATATGGTACATTT	NA	False	NA	NA	False	NA	NA	NA	85871476	85892457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_85871861_85873226_85873399_85878668_85878776_85890551_85890635_85892020
transcript_12733.known	chr12	+	783	9	FSM	ENSMUSG00000007867.10	ENSMUST00000222821.2	783	9	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_5	10.7637992827812	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTCTTCCATTCTGTCC	NA	False	NA	7	True	AATAAA	-17	NA	86129360	86209233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_86129415_86131867_86131961_86158384_86158450_86185566_86185600_86186825_86186870_86207922_86207996_86208225_86208302_86208760_86208824_86208951
transcript_12734.nic	chr12	+	1046	8	NIC	ENSMUSG00000007867.10	novel	783	9	NA	NA	-9	0	intron_retention	FALSE	canonical	3	179	junction_5	11.5015526902116	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTCTTCCATTCTGTCC	NA	False	NA	7	True	AATAAA	-17	NA	86129327	86209233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_86129415_86131867_86131961_86158384_86158450_86185566_86185600_86186825_86186870_86207922_86208302_86208760_86208824_86208951
transcript_12737.nnic	chr12	+	621	5	NNC	ENSMUSG00000007867.10	novel	773	8	NA	NA	18277	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	83.8063243436914	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTTCTTCCATTCTGTCC	NA	False	NA	7	True	AATAAA	-17	NA	86204998	86209233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_86205126_86207922_86207996_86208225_86208302_86208760_86208824_86208951
transcript_12738.nnic	chr12	+	1303	3	NIC	ENSMUSG00000097543.2	novel	3160	5	NA	NA	-15	-22200	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	2.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAGAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	86216099	86219676	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_86216220_86216782_86217055_86218765
transcript_12739.known	chr12	+	4355	10	FSM	ENSMUSG00000021254.10	ENSMUST00000221368.2	4355	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_9	9.46077020329245	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGCTTATGATTGAGGTC	NA	False	NA	3	True	AATAAA	-14	NA	86288631	86338558	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_86288719_86290808_86291481_86303641_86303707_86307350_86307528_86308389_86308470_86311955_86312024_86313917_86313958_86315749_86315836_86328222_86328318_86335573
transcript_12740.known	chr12	+	3829	9	FSM	ENSMUSG00000021254.10	ENSMUST00000071106.6	3829	9	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_8	8.71421252896669	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCTTGATATATCCT	NA	False	NA	NA	False	AATGAA	-23	NA	86288648	86338144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_86288719_86290808_86291481_86303641_86303707_86307350_86307528_86308389_86308470_86311955_86312024_86313917_86313958_86315749_86315836_86335573
transcript_12742.nnic	chr12	+	2054	7	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	-11	-3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	245.866946854504	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGAGTCGTTCATGCGTT	NA	False	NA	13	True	AATAAA	-13	NA	86516879	86568396	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594_86565880_86567737
transcript_12743.known	chr12	+	1344	6	FSM	ENSMUSG00000021255.18	ENSMUST00000167891.2	1344	6	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_2	30.0905300717684	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCCCAGCACATGGACGGA	NA	False	NA	NA	False	NA	NA	NA	86516890	86565839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_86517330_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
transcript_12744.nnic	chr12	+	3693	6	NNC	ENSMUSG00000021255.18	novel	4300	7	NA	NA	974	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	240.979999170056	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCGTTCATGCGTTGTC	NA	False	NA	16	True	AATAAA	-16	NA	86517864	86568399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_86518093_86535320_86535438_86552588_86552700_86553122_86553285_86561054_86561325_86565594
transcript_12746.nnic	chr12	-	848	4	Antisense	novelGene_ENSMUSG00000021255.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	10	junction_2	7.78888096369861	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTCTCCAGGTCACTG	NA	False	NA	-20	True	ATTAAA	-17	NA	86516827	86471840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr12_-_86472015_86476368_86476447_86508048_86508306_86516488
transcript_12748.nnic	chr12	-	770	3	Antisense	novelGene_ENSMUSG00000021255.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	12	junction_1	7.5	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTCTCCAGGTCACTG	NA	False	NA	-20	True	ATTAAA	-17	NA	86516827	86471840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr12_-_86472015_86508048_86508306_86516488
transcript_12750.nnic	chr12	-	791	3	Antisense	novelGene_ENSMUSG00000021255.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	13.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGGCAGCCTCTATTT	NA	False	NA	NA	False	NA	NA	NA	86516827	86478772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr12_-_86478968_86508048_86508306_86516488
transcript_12752.known	chr12	-	3850	10	FSM	ENSMUSG00000021257.15	ENSMUST00000021682.9	3850	10	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	10.9341463112378	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTTAGCCTTGTTATTG	NA	False	NA	0	True	AATAAA	-19	NA	86773234	86747275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_86749216_86749930_86750095_86752040_86752111_86763689_86763801_86764488_86764616_86767003_86767438_86768084_86768155_86768614_86768842_86769618_86770195_86773103
transcript_12754.known	chr12	-	483	2	FSM	ENSMUSG00000113555.2	ENSMUST00000222765.2	483	2	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGTACACAAAGAAATAAAAA	3781	False	NA	NA	False	NA	NA	NA	86893241	86892551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_86892971_86893177
transcript_12755.known	chr12	+	4098	4	FSM	ENSMUSG00000034157.13	ENSMUST00000187814.7	4098	4	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	3.2659863237109	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTGGTCTATTTGCTTTG	NA	False	NA	7	True	AATAAA	-19	NA	86994116	87012136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_86994274_86999517_86999706_87007045_87007216_87008553
transcript_12757.known	chr12	-	5064	21	FSM	ENSMUSG00000034126.6	ENSMUST00000037788.6	5064	21	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_16	10.2834819006016	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTCTTGTGCTTGATT	5649	False	NA	NA	False	AATAAA	-22	NA	87194676	87153634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_87156068_87156777_87156893_87157075_87157217_87158110_87158217_87158297_87158358_87158652_87158725_87163304_87163382_87164158_87164251_87164712_87164865_87166345_87166425_87169615_87169686_87171585_87171653_87174075_87174186_87175726_87175810_87177062_87177170_87178445_87178606_87180133_87180243_87182268_87182378_87184776_87184882_87186417_87186503_87193944
transcript_12759.known	chr12	+	1656	9	FSM	ENSMUSG00000021033.12	ENSMUST00000063117.10	1656	9	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_5	40.5555175037873	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCTTTTGTCATGGACAA	NA	False	NA	13	True	NA	NA	NA	87194491	87211497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_87194619_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
transcript_12762.known	chr12	+	724	9	FSM	ENSMUSG00000021033.12	ENSMUST00000222222.2	724	9	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	142.509429512576	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCCCAGATGCTGGGTGT	3847	False	NA	NA	False	NA	NA	NA	87204381	87210639	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_87204435_87204666_87204719_87205851_87205920_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
transcript_12767.known	chr12	+	971	8	FSM	ENSMUSG00000021033.12	ENSMUST00000220574.2	971	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	172.56918163154	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTCCCTATATGCCTTTT	NA	False	NA	NA	False	NA	NA	NA	87194545	87210934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_87194619_87204666_87204719_87206413_87206495_87206823_87206950_87208248_87208328_87208813_87208867_87209761_87209812_87210477
transcript_12774.nnic	chr12	-	616	4	NNC	ENSMUSG00000072919.5	novel	1101	6	NA	NA	8439	61	at_least_one_novel_splicesite	TRUE	canonical	2	11	junction_2	15.7973274814304	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCAGTATTCTTGGGTG	NA	False	NA	-9	True	AATAAA	-19	NA	87271891	87267967	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_87268219_87269818_87269953_87270931_87271084_87271812
transcript_12775.nnic	chr12	-	758	4	NNC	ENSMUSG00000072919.5	novel	1101	6	NA	NA	8386	61	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_2	1.69967317119759	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCAGTATTCTTGGGTG	NA	False	NA	-9	True	AATAAA	-19	NA	87271944	87267967	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_87268219_87269818_87270042_87270931_87271084_87271812
transcript_12778.known	chr12	-	2524	20	FSM	ENSMUSG00000021038.18	ENSMUST00000072744.15	2524	20	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	8.24352343784865	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTTCCCCATCTGGTTA	NA	False	NA	-10	True	AATAAA	-21	NA	87313030	87285646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_87286611_87288010_87288116_87288710_87288801_87289259_87289347_87291228_87291319_87291613_87291656_87292902_87293038_87293592_87293669_87296161_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87301003_87301061_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
transcript_12780.known	chr12	-	2418	19	FSM	ENSMUSG00000021038.18	ENSMUST00000179379.9	2418	19	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_13	23.717212585789	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCTCTTCCCCATCTGGT	NA	False	NA	-12	True	AATAAA	-19	NA	87312983	87285648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_87286611_87288010_87288116_87288710_87288801_87289259_87289347_87291228_87291319_87291613_87291656_87292902_87293038_87293592_87293669_87296161_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
transcript_12781.known	chr12	-	1790	12	FSM	ENSMUSG00000021038.18	ENSMUST00000222350.2	1790	12	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	4.43874749663044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCATCTTATTTACTTGT	NA	False	NA	NA	False	NA	NA	NA	87313027	87295303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_87296236_87297250_87297279_87298489_87298593_87299408_87299443_87299939_87300033_87301003_87301061_87303258_87303324_87304188_87304228_87305854_87305996_87307405_87307509_87310678_87310772_87312925
transcript_12788.known	chr12	+	1377	9	FSM	ENSMUSG00000021037.8	ENSMUST00000021425.8	1377	9	0	0	0	0	multi-exon	TRUE	canonical	3	2699	junction_7	143.152890295656	2008	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCATTTCTTACAATCTAT	NA	False	NA	-2	True	AGTAAA	-16	NA	87313471	87320753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_87313696_87314928_87315120_87316648_87316732_87317110_87317229_87318112_87318202_87319345_87319475_87319896_87319999_87320220_87320273_87320364
transcript_1279.known	chr1	+	558	4	FSM	ENSMUSG00000046330.11	ENSMUST00000059980.11	558	4	0	0	0	0	multi-exon	FALSE	canonical	2	9164	junction_1	3956.18005993998	2879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTACATAGCTTGGTTT	NA	False	NA	19	True	AATAAA	-17	NA	72750448	72752972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_72750483_72750830_72750960_72751300_72751384_72752660
transcript_12801.known	chr12	+	2252	1	FSM	ENSMUSG00000021037.8	ENSMUST00000222728.2	2252	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAGAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87313483	87315735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_87313500_87315700
transcript_12803.known	chr12	-	2526	6	FSM	ENSMUSG00000050671.13	ENSMUST00000125733.8	2526	6	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	6.95701085237043	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGATAAAGGATTTGGGG	7669	False	NA	1	True	AATAAA	-21	NA	87346479	87325411	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_87326977_87329073_87329158_87329419_87329561_87331799_87332161_87333668_87333912_87346347
transcript_12804.nic	chr12	-	1006	2	ISM	ENSMUSG00000050671.13	ENSMUST00000125733.8	2526	6	-92	7718	-92	-3936	5prime_fragment	FALSE	canonical	3	97	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCTGTCTGCTTGGTTTGT	7577	False	NA	NA	False	AAGAAA	-41	NA	87346571	87333129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_87333912_87346347
transcript_12806.known	chr12	-	6710	12	FSM	ENSMUSG00000021036.11	ENSMUST00000021424.5	6710	12	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.0427457550466	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGCCTTTATTCATTCA	8696	False	NA	NA	False	AATAAA	-16	NA	87435129	87351831	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_87356795_87359471_87359602_87360824_87360961_87382805_87382933_87388310_87388531_87389417_87389524_87393481_87393576_87397034_87397160_87402299_87402449_87403321_87403477_87415704_87415900_87434819
transcript_12822.known	chr12	-	2232	14	FSM	ENSMUSG00000021039.10	ENSMUST00000021428.9	2232	14	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_13	97.7330623652505	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTGTTTATTTAGTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	87519044	87496679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_87497487_87497575_87497740_87499351_87499470_87500627_87500725_87502359_87502502_87503621_87503739_87505662_87505729_87506190_87506261_87507176_87507282_87508434_87508542_87508631_87508728_87511319_87511482_87515379_87515534_87519017
transcript_12835.known	chr12	-	2154	8	FSM	ENSMUSG00000079036.11	ENSMUST00000161712.8	2154	8	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_6	99.4164606745846	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACCTGTATCTGTCTTT	NA	False	NA	-56	True	AATAAA	-19	NA	87490606	87474849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87488040_87488114_87488412_87488551_87490411
transcript_12837.known	chr12	-	2019	7	FSM	ENSMUSG00000079036.11	ENSMUST00000160113.8	2019	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	112.096312755297	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTATCTGTCTTTGAG	NA	False	NA	-53	True	AATAAA	-22	NA	87490596	87474846	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87488412_87488551_87490411
transcript_12846.known	chr12	-	3857	6	FSM	ENSMUSG00000079036.11	ENSMUST00000162961.8	3857	6	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_2	59.8431282604778	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTGTTTTGCCTTCTT	NA	False	NA	-2	True	ATTAAA	-15	NA	87490609	87472938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_87476041_87478169_87478364_87480888_87480980_87485166_87485330_87487075_87487185_87490411
transcript_12848.known	chr12	-	1883	6	FSM	ENSMUSG00000079036.11	ENSMUST00000162247.8	1883	6	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_2	71.1983145867934	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGTATCTGTCTTTGAG	NA	False	NA	-53	True	AATAAA	-22	NA	87490598	87474846	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_87476041_87478169_87478309_87480888_87480980_87485166_87485330_87487075_87487185_87490411
transcript_12857.known	chr12	+	335	4	FSM	ENSMUSG00000021040.16	ENSMUST00000077462.8	335	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	1742.05708542771	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGAGACTTTTTCTACA	NA	False	NA	16	True	AATAAA	-3	NA	87490705	87496674	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_87490797_87494333_87494369_87496062_87496171_87496573
transcript_12859.known	chr12	+	2701	4	FSM	ENSMUSG00000021040.16	ENSMUST00000161023.8	2701	4	0	0	0	0	multi-exon	FALSE	canonical	3	3495	junction_2	126.36015546401	930	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAATGGAAAAAAGAAAC	NA	False	NA	NA	False	NA	NA	NA	87490665	87498976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_87490797_87494333_87494393_87496062_87496171_87496573
transcript_12861.known	chr12	-	1335	1	FSM	ENSMUSG00000079036.11	ENSMUST00000091090.5	1335	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87490787	87489452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_87489500_87490800
transcript_12862.known	chr12	-	479	1	FSM	ENSMUSG00000021039.10	ENSMUST00000223119.2	479	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	87519039	87518560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_87518600_87519000
transcript_12863.known	chr12	+	802	3	FSM	ENSMUSG00000021040.16	ENSMUST00000160488.8	802	3	0	0	0	0	multi-exon	FALSE	canonical	3	3495	junction_2	154.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACACGTTTTTATTTGAAAT	NA	False	NA	32	True	AATAAA	-19	NA	87490681	87496690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_87490797_87494333_87494393_87496062
transcript_12864.known	chr12	+	1873	2	FSM	ENSMUSG00000079034.3	ENSMUST00000110152.3	1873	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATGCAGTCTGATGGTTT	NA	False	NA	NA	False	AATAAA	-31	NA	87561085	87565036	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_87561276_87563353
transcript_12867.known	chr12	+	1850	2	FSM	ENSMUSG00000092019.5	ENSMUST00000164838.3	1850	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAAAAGATTAATGC	NA	False	NA	NA	False	AATAAA	-18	NA	87665638	87669725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_87665828_87668064
transcript_12868.known	chr12	-	1840	2	FSM	ENSMUSG00000079029.3	ENSMUST00000101168.4	1840	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TGAAAAAGAAAAAGATCAAT	NA	False	NA	NA	False	AATAAA	-16	NA	88241270	88237409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_88239059_88241079
transcript_12869.known	chr12	-	1856	2	FSM	ENSMUSG00000093847.3	ENSMUST00000218054.3	1856	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATGCAGTCTGATGGTCT	NA	False	NA	NA	False	AATAAA	-31	NA	88290796	88286891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_88288562_88290610
transcript_12872.known	chr12	+	2158	11	FSM	ENSMUSG00000021044.16	ENSMUST00000101165.9	2158	11	0	0	0	0	multi-exon	TRUE	canonical	3	29	junction_1	14.3544418212622	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGACTGTTCCTTCTCAA	NA	False	NA	10	True	AATAAA	-23	NA	88327323	88428489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_88327366_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
transcript_12875.known	chr12	+	2253	11	FSM	ENSMUSG00000021044.16	ENSMUST00000222695.2	2253	11	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	17.7822945651004	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGACTGTTCCTTCTCAAT	NA	False	NA	11	True	AATAAA	-24	NA	88327417	88428490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_88327554_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
transcript_12877.known	chr12	+	2199	11	FSM	ENSMUSG00000021044.16	ENSMUST00000166940.3	2199	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	20.9752234791432	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGACTGTTCCTTCTCA	NA	False	NA	9	True	AATAAA	-22	NA	88327658	88428488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_88327743_88335104_88335251_88338464_88338549_88368742_88368947_88397790_88397950_88407852_88408012_88413410_88413528_88422248_88422399_88423506_88423705_88425779_88425974_88427784
transcript_1288.known	chr1	+	665	3	FSM	ENSMUSG00000046330.11	ENSMUST00000212432.2	665	3	0	0	0	0	multi-exon	FALSE	canonical	2	15690	junction_1	1470.5	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATAAACGGGTTATTTACG	NA	False	NA	-23	True	NA	NA	NA	72750472	72752755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_72750960_72751300_72751384_72752660
transcript_12881.known	chr12	-	1750	14	FSM	ENSMUSG00000061533.17	ENSMUST00000127802.8	1750	14	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_11	16.8824687613894	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTAGTTTTGGAGGCAA	6152	False	NA	NA	False	AATAAA	-17	NA	91351183	91256166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_91256415_91260807_91260941_91262976_91263052_91265764_91265852_91292288_91292406_91300024_91300098_91305832_91305925_91314299_91314416_91315523_91315651_91331133_91331221_91333116_91333279_91336854_91336971_91348421_91348563_91351007
transcript_12884.known	chr12	-	6300	21	FSM	ENSMUSG00000020964.15	ENSMUST00000021347.12	6300	21	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_17	38.6834589973544	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGGGCGTGTGCCAC	NA	False	NA	-24	True	AATAAA	-18	NA	91815931	91772816	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_91776828_91778650_91778780_91780605_91780779_91781392_91781468_91781747_91781914_91782539_91782689_91782994_91783083_91784055_91784119_91784992_91785071_91786815_91786885_91790307_91790365_91791593_91791749_91792070_91792153_91793278_91793339_91793425_91793480_91797460_91797624_91798342_91798449_91799828_91799997_91808411_91808629_91809999_91810038_91815732
transcript_12885.known	chr12	-	5544	21	FSM	ENSMUSG00000020964.15	ENSMUST00000167466.2	5544	21	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_17	69.9646339231472	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91815903	91773394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_91776828_91778650_91778780_91780605_91780779_91781392_91781468_91781747_91781914_91782539_91782689_91782994_91783083_91784055_91784119_91784992_91785071_91786815_91786885_91790307_91790365_91791593_91791749_91792070_91792153_91793278_91793339_91793425_91793480_91797460_91797624_91798342_91798449_91799978_91799997_91808411_91808629_91809999_91810038_91815732
transcript_12887.known	chr12	-	1402	12	FSM	ENSMUSG00000020964.15	ENSMUST00000167594.8	1402	12	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_8	33.3912444603607	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCCTGTCTTCATGTGAA	NA	False	NA	NA	False	AATAAA	-21	NA	91815904	91786754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_91786885_91790307_91790365_91791593_91791749_91792070_91792153_91793278_91793339_91793425_91793480_91797460_91797624_91798342_91798449_91799828_91799997_91808411_91808629_91809999_91810038_91815732
transcript_12889.known	chr12	+	2052	12	FSM	ENSMUSG00000021007.15	ENSMUST00000048402.12	2052	12	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	12.115149999242	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCACATATTTATTATTGC	NA	False	NA	17	True	NA	NA	NA	98594415	98636074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_98594594_98598221_98598297_98600482_98600579_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
transcript_1289.nnic	chr1	+	969	4	NNC	ENSMUSG00000039323.19	novel	906	3	NA	NA	-730	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	1672.39096970641	583	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	560	False	NA	18	True	AATAAA	-3	NA	72862931	72891633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_72863056_72888244_72888472_72888722_72888864_72891156
transcript_12891.known	chr12	+	1913	11	FSM	ENSMUSG00000021007.15	ENSMUST00000101146.4	1913	11	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	15.3766056072203	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCACATATTTATTAT	NA	False	NA	14	True	NA	NA	NA	98594455	98636071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_98594594_98598221_98598297_98603824_98603873_98614607_98614742_98624471_98624906_98625808_98625876_98628230_98628347_98629423_98629478_98630486_98630565_98635090_98635149_98635360
transcript_12895.known	chr12	+	938	2	FSM	ENSMUSG00000021007.15	ENSMUST00000130136.2	938	2	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGGTAAAGAGTG	NA	False	NA	NA	False	NA	NA	NA	98594448	98599014	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_98594594_98598221
transcript_12896.known	chr12	+	3514	17	FSM	ENSMUSG00000021012.17	ENSMUST00000110105.10	3514	17	0	0	0	0	multi-exon	FALSE	canonical	3	883	junction_12	209.53098667023	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGTGTTTAATAATGTGA	NA	False	NA	NA	False	AATAAA	-16	NA	98713247	98754012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_98713418_98713738_98713782_98719036_98719152_98722443_98722485_98723267_98723464_98724770_98725201_98725977_98726139_98726568_98726670_98730081_98730238_98740503_98740579_98745366_98745527_98746306_98746540_98749840_98749962_98751174_98751312_98751576_98751666_98751893_98752001_98752833
transcript_12898.known	chr12	+	3146	15	FSM	ENSMUSG00000021012.17	ENSMUST00000110104.10	3146	15	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_10	269.986630432407	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGTGTTTAATAATGTGA	NA	False	NA	NA	False	AATAAA	-16	NA	98713222	98754012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_98713418_98713738_98713782_98719036_98719152_98722443_98722485_98723267_98723464_98724770_98725201_98725977_98726139_98726568_98726670_98730081_98730238_98740503_98740579_98749840_98749962_98751174_98751312_98751576_98751666_98751893_98752001_98752833
transcript_12899.known	chr12	+	2272	14	FSM	ENSMUSG00000021013.17	ENSMUST00000085109.10	2272	14	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_7	3.54347470962493	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACACTTTTCACTTTTCA	NA	False	NA	NA	False	AATAAA	-10	NA	98886832	98949491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_98887043_98908476_98908598_98909561_98909626_98909720_98909881_98910083_98910174_98912827_98912873_98923539_98923626_98927660_98927749_98930755_98930867_98940900_98941041_98942235_98942411_98942685_98942809_98946060_98946145_98948716
transcript_12900.known	chr12	+	345	1	FSM	ENSMUSG00000062582.7	ENSMUST00000076166.7	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACAAGAAAGTTTTCCTT	NA	False	NA	NA	False	NA	NA	NA	99013488	99013833	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_99013500_99013800
transcript_12903.known	chr12	-	2068	6	FSM	ENSMUSG00000021176.7	ENSMUST00000046485.5	2068	6	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_2	7.87400787401181	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCATATTTATGGTATGTA	NA	False	NA	-6	True	ATTAAA	-23	NA	99849701	99683790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_99685363_99820868_99820960_99821796_99821899_99844615_99844662_99849020_99849117_99849540
transcript_1291.known	chr1	+	1307	4	FSM	ENSMUSG00000039323.19	ENSMUST00000047328.11	1307	4	0	0	0	0	multi-exon	FALSE	canonical	3	3391	junction_2	148.912353043288	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTCTTACTTGAGTC	1290	False	NA	18	True	AATAAA	-3	NA	72863661	72891633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_72864124_72888244_72888472_72888722_72888864_72891156
transcript_12912.known	chr12	-	3131	3	FSM	ENSMUSG00000021176.7	ENSMUST00000221801.2	3131	3	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_2	4.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGTTGCCTTGGTCATGGT	NA	False	NA	NA	False	NA	NA	NA	99849762	99841848	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_99844662_99849020_99849117_99849540
transcript_12916.known	chr12	+	2036	16	FSM	ENSMUSG00000021177.17	ENSMUST00000153627.8	2036	16	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_1	45.8998910674089	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTACAGGCCTGGAATGA	NA	False	NA	19	True	ATTAAA	-19	NA	99850795	99921478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498_99911608_99921221
transcript_12918.nic	chr12	+	2060	15	ISM	ENSMUSG00000021177.17	ENSMUST00000153627.8	2036	16	-62	9652	-42	8205	5prime_fragment	FALSE	canonical	3	362	junction_1	44.7195341511277	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCATGTGTGTATTGGTA	NA	False	NA	NA	False	NA	NA	NA	99850733	99911826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263_99901367_99911498
transcript_12920.nic	chr12	+	1866	14	NIC	ENSMUSG00000021177.17	novel	3945	14	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_13	129.038226527357	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTACTGTGAGACCTTTA	NA	False	NA	3	True	NA	NA	NA	99850733	99885563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99885326
transcript_12923.nic	chr12	+	1343	7	ISM	ENSMUSG00000021177.17	ENSMUST00000151019.8	3945	14	-42	30863	-42	-6080	5prime_fragment	FALSE	canonical	3	362	junction_1	62.5604152444304	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGTTGGTTTGTGTGTTTG	NA	False	NA	NA	False	NA	NA	NA	99850733	99872758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294
transcript_12924.known	chr12	+	3945	14	FSM	ENSMUSG00000021177.17	ENSMUST00000151019.8	3945	14	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_1	46.3484359476444	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATTAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	GGGGCT	-25	NA	99850775	99903621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_99850812_99857435_99858005_99859876_99859921_99860968_99861025_99864522_99864620_99868606_99868642_99872294_99872388_99875937_99876106_99876541_99876621_99877853_99878040_99878533_99878583_99880309_99880377_99881708_99881817_99901263
transcript_12928.known	chr12	+	1591	11	FSM	ENSMUSG00000021178.10	ENSMUST00000021595.10	1591	11	0	0	0	0	multi-exon	FALSE	canonical	3	1446	junction_1	298.758363899657	2201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGGGAAGAGTTCATTTT	3973	False	NA	12	True	NA	NA	NA	100076412	100089664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_100076471_100078589_100078644_100079314_100079412_100081096_100081222_100081678_100081865_100082045_100082175_100082957_100083055_100085331_100085522_100086245_100086398_100087251_100087407_100089316
transcript_1293.known	chr1	+	991	4	FSM	ENSMUSG00000039323.19	ENSMUST00000120564.2	991	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	1673.33041168404	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAAGTGTGTGTCTTAC	573	False	NA	11	True	ATTAAA	-11	NA	72864480	72891626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_72864634_72888244_72888472_72888722_72888864_72891156
transcript_1294.known	chr1	-	437	2	FSM	ENSMUSG00000026182.7	ENSMUST00000027374.7	437	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTTTGATTTTATTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	73055068	73054232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_73054485_73054883
transcript_12940.known	chr12	-	3446	20	FSM	ENSMUSG00000033530.9	ENSMUST00000062957.8	3446	20	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_10	15.649378488982	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTGGCTTTTGTCTTTCA	NA	False	NA	-1	True	AATAAA	-21	NA	100487085	100267028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_100268030_100291802_100292006_100298837_100298979_100314194_100314293_100321261_100321379_100339802_100339964_100342434_100342508_100348379_100348438_100350405_100350524_100352114_100352220_100353369_100353454_100369615_100369754_100373258_100373323_100381393_100381567_100385750_100385830_100413118_100413241_100432438_100432570_100461530_100461700_100466334_100466490_100486829
transcript_12942.known	chr12	+	1230	4	FSM	ENSMUSG00000113679.2	ENSMUST00000220721.2	1230	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5.79271573232759	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTAGTCAAGTGCCTCG	NA	False	NA	NA	False	ATTAAA	-21	NA	100256543	100268574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_100256684_100261887_100261990_100267215_100267355_100267725
transcript_12943.nic	chr12	-	1235	8	NIC	ENSMUSG00000021180.10	novel	1039	8	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	9.9979589753844	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAACGTGTTTATAAAC	NA	False	NA	NA	False	NA	NA	NA	100691390	100560642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_100560824_100562073_100562178_100564148_100564233_100582255_100582364_100585784_100585901_100620529_100620749_100644776_100644849_100691039
transcript_12944.known	chr12	-	403	1	FSM	ENSMUSG00000113113.2	ENSMUST00000223227.2	403	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAATCTGTTATGCCATA	NA	False	NA	NA	False	AAAACA	-13	NA	100711194	100710791	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_100710800_100711200
transcript_12945.known	chr12	-	1253	7	FSM	ENSMUSG00000021182.17	ENSMUST00000223097.2	1253	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	30.7986291181208	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAGGCCTGTGTGATTAT	NA	False	NA	NA	False	AATAAA	-22	NA	100995168	100935602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_100936295_100936650_100936735_100937479_100937539_100950158_100950229_100988552_100988662_100994494_100994596_100995030
transcript_12947.known	chr12	+	706	3	FSM	ENSMUSG00000097121.3	ENSMUST00000221614.2	706	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	1	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTGGTTTAGTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	101049936	101054442	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_101050285_101050542_101050759_101054300
transcript_12948.nic	chr12	-	1626	3	ISM	ENSMUSG00000041846.16	ENSMUST00000222956.2	6009	5	6084	0	960	0	3prime_fragment	FALSE	canonical	3	499	junction_2	93	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTATTAATTGTATGTTTC	7291	False	NA	-24	True	AATAAA	-25	NA	101008844	101005770	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_101007039_101008083_101008311_101008713
transcript_12950.known	chr12	-	5829	11	FSM	ENSMUSG00000021186.10	ENSMUST00000021603.9	5829	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	1.74355957741627	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATACATGGCATGTAAAA	NA	False	NA	NA	False	AATAAA	-43	NA	101785314	101712823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_101717163_101723514_101723711_101726959_101727087_101728060_101728184_101731414_101731535_101734651_101734769_101737503_101737627_101775974_101776230_101778412_101778465_101780800_101780856_101784992
transcript_12953.known	chr12	-	5363	11	FSM	ENSMUSG00000021189.12	ENSMUST00000021606.12	5363	11	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_2	46.8375917399689	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCTCTATTTCTAATTT	NA	False	NA	-5	True	AATAAA	-20	NA	101924505	101885159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_101889464_101892742_101892841_101899226_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
transcript_12957.nic	chr12	-	1382	10	ISM	ENSMUSG00000021189.12	ENSMUST00000021606.12	5363	11	-7	7267	-7	-3087	5prime_fragment	FALSE	canonical	3	190	junction_1	41.7943229649526	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCTTTTCCTTTTTTAA	NA	False	NA	NA	False	NA	NA	NA	101924512	101892426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_101892841_101899226_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914308_101914533_101914699_101924392
transcript_12959.known	chr12	-	879	9	FSM	ENSMUSG00000021189.12	ENSMUST00000159883.2	879	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_7	92.3612980365694	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGTTGCATATTTAATA	NA	False	NA	-25	True	AGTAAA	-15	NA	101924407	101899207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_101899324_101900506_101900674_101903595_101903729_101908375_101908464_101911658_101911726_101912092_101912179_101914262_101914305_101914533_101914699_101924392
transcript_12964.known	chr12	+	5732	15	FSM	ENSMUSG00000041781.10	ENSMUST00000047357.10	5732	15	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_8	15.7246718923623	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCATGTTTCTTGTGCTT	NA	False	NA	11	True	NA	NA	NA	101942246	101972683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_101942394_101948172_101948355_101949434_101949595_101949678_101949785_101951479_101951610_101953516_101953633_101954891_101955080_101956047_101956339_101963077_101963179_101963513_101963715_101964795_101964949_101965631_101965858_101966935_101967236_101968886_101969022_101969387
transcript_12971.known	chr12	-	511	3	FSM	ENSMUSG00000113902.2	ENSMUST00000221191.2	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_2	787	284	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAATTAGAAGAATTTAAA	NA	False	NA	-17	True	AATAAA	-12	NA	101942186	101934368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_101934470_101935751_101935894_101941918
transcript_12974.known	chr12	-	1990	14	FSM	ENSMUSG00000021190.15	ENSMUST00000021607.9	1990	14	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_3	48.4071734133467	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATTTGTTTCTGGACTCT	7489	False	NA	-17	True	AAAACA	-15	NA	102406072	102360356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_102360872_102361100_102361169_102361902_102362074_102364441_102364643_102366163_102366254_102366396_102366516_102368143_102368211_102368928_102368992_102369685_102369762_102370518_102370605_102372054_102372137_102379723_102379822_102389843_102390015_102405889
transcript_12976.known	chr12	+	2827	13	FSM	ENSMUSG00000021192.17	ENSMUST00000179218.9	2827	13	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_3	16.7257286836777	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAGAGTGCTTTATATT	NA	False	NA	NA	False	AATAAA	-18	NA	102435393	102464164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_102435623_102438256_102438825_102440804_102441033_102442428_102442649_102443055_102443180_102445856_102446061_102450662_102450834_102453378_102453508_102455677_102455777_102458271_102458498_102460012_102460119_102461958_102462023_102463705
transcript_12979.known	chr12	+	1883	8	FSM	ENSMUSG00000021194.7	ENSMUST00000021610.7	1883	8	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_1	6.51841974088562	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTTTGATTTATTTTCG	NA	False	NA	24	True	AATAAA	-18	NA	102521227	102531287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_102521430_102522143_102522191_102524724_102524819_102525547_102525617_102527603_102527763_102527925_102528343_102528856_102529333_102530868
transcript_12980.known	chr12	-	2918	10	FSM	ENSMUSG00000057963.10	ENSMUST00000046518.12	2918	10	0	0	0	0	multi-exon	TRUE	canonical	3	205	junction_5	27.4851250454756	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTACGTGGTCACAGTC	2407	False	NA	-1	True	AATAAA	-20	NA	102671189	102534840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_102536744_102540180_102540344_102545363_102545432_102550545_102550712_102554154_102554196_102554722_102554822_102572347_102572466_102589558_102589685_102641701_102641727_102670980
transcript_12987.known	chr12	+	3261	11	FSM	ENSMUSG00000041712.8	ENSMUST00000046404.8	3261	11	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_2	45.0115540722602	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTCTGATTGTTCT	NA	False	NA	33	True	ATTAAA	-14	NA	102724225	102743966	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_102724438_102727629_102727764_102728179_102728241_102729716_102729813_102732066_102732121_102732504_102732611_102734328_102734538_102735352_102735503_102736039_102736203_102737477_102737540_102741952
transcript_1299.known	chr1	+	1439	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113820.9	1439	11	0	0	0	0	multi-exon	TRUE	canonical	3	1389	junction_1	306.215936881149	996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGAATTTGTTGATTTT	7828	False	NA	14	True	AATAAA	-19	NA	74275655	74307368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_74275770_74275976_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
transcript_12993.nnic	chr12	-	1005	3	NNC	ENSMUSG00000091931.6	novel	1152	2	NA	NA	-52	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	118.5	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTCTGTAGCCTCTT	6307	False	NA	-1	True	AATAAA	-20	NA	102724114	102719533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_102719714_102719915_102720426_102723799
transcript_12994.nnic	chr12	-	1004	3	NNC	ENSMUSG00000091931.6	novel	1152	2	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	118.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTCTGTAGCCTCTT	6307	False	NA	-1	True	AATAAA	-20	NA	102724114	102719533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_102719723_102719925_102720426_102723799
transcript_12995.known	chr12	+	3367	2	FSM	ENSMUSG00000046675.8	ENSMUST00000057416.8	3367	2	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCGTGCCATTGTCAT	NA	False	NA	NA	False	AAAACA	-45	NA	102710020	102713820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_102710426_102710858
transcript_12996.known	chr12	-	1312	2	FSM	ENSMUSG00000096458.8	ENSMUST00000173760.9	1312	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGACCCAAGGCTGTCA	NA	False	NA	NA	False	NA	NA	NA	102709904	102708488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_102709654_102709757
transcript_12997.known	chr12	-	1284	2	FSM	ENSMUSG00000096458.8	ENSMUST00000178384.2	1284	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAGACCCAAGGCTGTCA	NA	False	NA	NA	False	NA	NA	NA	102709920	102708488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_102709654_102709801
transcript_12998.known	chr12	-	2795	2	FSM	ENSMUSG00000041716.8	ENSMUST00000174651.2	2795	2	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	0	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGATCTTTGTATACAT	5490	False	NA	-23	True	AATAAA	-16	NA	102724931	102707990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_102709654_102723799
transcript_12999.known	chr12	-	1152	2	FSM	ENSMUSG00000091931.6	ENSMUST00000173969.2	1152	2	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_1	0	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATATTTTCTGTAGCCTCTT	6362	False	NA	-1	True	AATAAA	-20	NA	102724059	102719533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_102720426_102723799
transcript_13.known	ERCC-00042	+	1007	1	FSM	ERCC-00042A	DQ516783	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	99	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AAAACA	-5	NA	0	1007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00042_+_0_1000
transcript_130.known	SIRV5	+	2085	17	FSM	SIRV5A	SIRV508	2085	17	0	0	0	0	multi-exon	FALSE	canonical	3	2297	junction_10	2773.74385702339	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1008	10991	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
transcript_13002.known	chr12	+	458	2	FSM	ENSMUSG00000043319.6	ENSMUST00000053611.5	458	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGCTTAGTATTGCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	102865574	102866785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_102865751_102866503
transcript_13003.known	chr12	-	2690	10	FSM	ENSMUSG00000021200.15	ENSMUST00000021617.14	2690	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	13.984117975602	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGCCCTGTGATTCCTG	4667	False	NA	-2	True	AATAAA	-15	NA	103322260	103287400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_103287934_103290021_103290176_103291311_103291874_103296603_103296776_103299550_103299797_103301107_103301264_103302068_103302236_103304335_103304441_103311914_103312192_103321942
transcript_13004.nic	chr12	-	761	2	ISM	ENSMUSG00000021200.15	ENSMUST00000127447.2	2399	6	11594	-4	11594	0	3prime_fragment	FALSE	canonical	3	41	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGCCCTGTGATTCCTG	NA	False	NA	-2	True	AATAAA	-15	NA	103290249	103287400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_103287934_103290021
transcript_13005.known	chr12	+	2791	6	FSM	ENSMUSG00000021203.16	ENSMUST00000021620.13	2791	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	8.60232526704263	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCAGTCTGGCTTCTTAA	8176	False	NA	NA	False	ATTAAA	-16	NA	103354956	103372604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_103355133_103366454_103366551_103367207_103367327_103369075_103369161_103369492_103369688_103370484
transcript_13006.nic	chr12	+	2783	6	NIC	ENSMUSG00000021203.16	novel	424	4	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	32.5047688808888	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGGCTTCTTAATGTTG	8424	False	NA	NA	False	ATTAAA	-21	NA	103355204	103372609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_103355368_103366454_103366551_103367207_103367327_103369075_103369161_103369492_103369688_103370484
transcript_13008.known	chr12	-	2850	9	FSM	ENSMUSG00000041645.15	ENSMUST00000044923.15	2850	9	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_8	40.7106788815908	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGAGGGTGTTGCAGTG	NA	False	NA	-12	True	ATTAAA	-20	NA	103392078	103374240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_103374737_103376186_103376317_103377387_103377577_103382454_103382531_103383536_103384053_103384322_103384477_103385220_103385743_103390130_103390857_103392037
transcript_13009.known	chr12	-	4274	2	FSM	ENSMUSG00000041645.15	ENSMUST00000220705.2	4274	2	0	0	0	0	multi-exon	FALSE	canonical	3	750	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACAAT	NA	False	NA	NA	False	NA	NA	NA	103392089	103386634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_103390857_103392037
transcript_13012.known	chr12	+	977	7	FSM	ENSMUSG00000064215.14	ENSMUST00000085065.12	977	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	6.23832242407097	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCATTGTTCCCCTTTC	6634	False	NA	5	True	AATAAA	-19	NA	103400517	103406498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_103400610_103401680_103401833_103402821_103402942_103403648_103403784_103403934_103403965_103405659_103405822_103406212
transcript_13013.known	chr12	+	889	6	FSM	ENSMUSG00000064215.14	ENSMUST00000066701.13	889	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	3.54400902933387	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCATTGTTCCCCTTTC	6587	False	NA	5	True	AATAAA	-19	NA	103400470	103406498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_103400610_103401680_103401833_103402821_103402942_103403934_103403965_103405659_103405822_103406212
transcript_13014.known	chr12	+	527	3	FSM	ENSMUSG00000064215.14	ENSMUST00000153670.2	527	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTCATTGTTCCCCTTTC	10002	False	NA	5	True	AATAAA	-19	NA	103403885	103406498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_103403965_103405659_103405822_103406212
transcript_13015.known	chr12	-	463	4	FSM	ENSMUSG00000079017.4	ENSMUST00000055071.9	463	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTGTGGTGGCTCTTT	6294	False	NA	NA	False	AAAACA	-28	NA	103409939	103408425	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_103408643_103409090_103409253_103409740_103409771_103409885
transcript_13018.nnic	chr12	+	2147	6	NNC	ENSMUSG00000041449.17	novel	1226	4	NA	NA	-13	738	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	28.5278810990231	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGAGTGTTCACAGAGC	NA	False	NA	12	True	AATAAA	-18	NA	104214150	104220666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_104214232_104215408_104215499_104216398_104217017_104217730_104218005_104218943_104219095_104219733
transcript_13019.nic	chr12	+	1292	5	NIC	ENSMUSG00000041449.17	novel	1226	4	NA	NA	-59	-73	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	10.7325439668328	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTGATGATTATCTCTG	NA	False	NA	NA	False	AATATA	-13	NA	104214104	104219855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_104214232_104216398_104217017_104217730_104218005_104218943_104219095_104219733
transcript_13020.nic	chr12	+	2156	5	NIC	ENSMUSG00000041449.17	novel	1226	4	NA	NA	-112	738	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	10.7325439668328	53	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGAGTGTTCACAGAGC	NA	False	NA	12	True	AATAAA	-18	NA	104214051	104220666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_104214232_104216398_104217017_104217730_104218005_104218943_104219095_104219733
transcript_13027.known	chr12	+	2200	6	FSM	ENSMUSG00000079014.5	ENSMUST00000109958.3	2200	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10.7256701422335	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTTCACAGAACTTCCA	NA	False	NA	NA	False	GATAAA	-23	NA	104229380	104235631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_104229474_104230560_104230695_104231352_104231972_104232703_104232978_104233914_104234066_104234702
transcript_1303.known	chr1	+	1313	11	FSM	ENSMUSG00000006304.15	ENSMUST00000113819.2	1313	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	696.999605451825	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATTCC	7881	False	NA	18	True	NA	NA	NA	74275708	74307147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_74275770_74275976_74276207_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
transcript_13030.nnic	chr12	+	1149	5	NIC	ENSMUSG00000079014.5	novel	2200	6	NA	NA	-29	-806	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	10.6624340560681	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCTGATAATTATCTCTGA	NA	False	NA	NA	False	AATATA	-14	NA	104229351	104234825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_104229474_104230560_104230695_104231352_104231972_104233914_104234066_104234702
transcript_13034.nnic	chr12	+	1839	5	NNC	ENSMUSG00000079012.12	novel	1658	5	NA	NA	-9731	0	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	12.328828005938	23	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGCTCTCAGCTTGCAG	623	False	NA	18	True	AATACA	-27	NA	104343691	104360516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_104343932_104355322_104355972_104357714_104357989_104358900_104359052_104359991
transcript_13035.nnic	chr12	+	1575	5	NNC	ENSMUSG00000079012.12	novel	1658	5	NA	NA	-9709	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	35.1105397281215	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGCTCTCAGCTTGCAG	645	False	NA	18	True	AATACA	-27	NA	104343713	104360516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_104343932_104355564_104355972_104357714_104357989_104358900_104359052_104359991
transcript_13037.known	chr12	-	527	2	FSM	ENSMUSG00000113722.2	ENSMUST00000222812.2	527	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTGTCTCGTCTACTC	8338	False	NA	NA	False	NA	NA	NA	104998536	104996875	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_104997085_104998218
transcript_13044.known	chr12	-	535	3	FSM	ENSMUSG00000041359.15	ENSMUST00000175652.2	535	3	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_2	399	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGGGGCTCCAGAGAAGAT	NA	False	NA	NA	False	NA	NA	NA	105189052	105183756	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_105183961_105184481_105184552_105188791
transcript_13048.known	chr12	-	1398	4	FSM	ENSMUSG00000041359.15	ENSMUST00000041316.15	1398	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	814.330945555238	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCTCTTGGAATTATG	NA	False	NA	-2	True	AATAAA	-23	NA	105188996	105183008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_105183961_105184481_105184552_105184917_105185089_105188791
transcript_13049.known	chr12	-	1299	3	FSM	ENSMUSG00000041359.15	ENSMUST00000101071.4	1299	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	973.5	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATTTCTCGTGCTCTTG	NA	False	NA	-10	True	AATAAA	-15	NA	105188975	105183016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_105183961_105184917_105185089_105188791
transcript_13050.known	chr12	+	3282	3	FSM	ENSMUSG00000097929.10	ENSMUST00000180458.9	3282	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	9	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTTTATCTAATTTATT	NA	False	NA	NA	False	AATAAA	-18	NA	105302852	105350191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_105303217_105303488_105303819_105347603
transcript_13052.nnic	chr12	+	1553	3	NNC	ENSMUSG00000097929.10	novel	3282	3	NA	NA	-59	-1822	intron_retention	FALSE	canonical	3	11	junction_1	10.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATATTTGGAGAAGCAC	NA	False	NA	30	True	AATAAA	-24	NA	105302793	105348367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_105303253_105303488_105303819_105347603
transcript_13053.known	chr12	+	5786	2	FSM	ENSMUSG00000094910.2	ENSMUST00000178224.2	5786	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGCTCCCACACACTT	NA	False	NA	8	True	ATTAAA	-22	NA	105420114	105459354	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_105420410_105453863
transcript_13055.known	chr12	+	3792	3	FSM	ENSMUSG00000021070.7	ENSMUST00000001652.7	3792	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	4.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGTGTTTCCCTGTGTCA	NA	False	NA	NA	False	AATAAA	-14	NA	105529484	105561496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_105529508_105554455_105554560_105557831
transcript_13056.nnic	chr12	+	2399	4	NNC	ENSMUSG00000044715.8	novel	2720	3	NA	NA	-43	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	58.2656750487703	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGAGCATAAAGCAGTCAT	NA	False	NA	NA	False	AATAAA	-20	NA	105651599	105669282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_105651718_105664976_105665236_105666896_105668633_105668996
transcript_13058.known	chr12	+	2720	3	FSM	ENSMUSG00000044715.8	ENSMUST00000051934.7	2720	3	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_2	9.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGAGCATAAAGCAGTCAT	NA	False	NA	NA	False	AATAAA	-20	NA	105651642	105669282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_105651718_105664976_105665236_105666896
transcript_13060.known	chr12	+	1064	2	FSM	ENSMUSG00000044715.8	ENSMUST00000222284.2	1064	2	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTTGAGGGTGTAAATA	NA	False	NA	NA	False	AATAAA	-15	NA	105651087	105665410	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_105651718_105664976
transcript_13062.nic	chr12	+	1646	6	ISM	ENSMUSG00000041323.7	ENSMUST00000040876.7	3099	18	55399	0	16100	0	3prime_fragment	FALSE	canonical	3	37	junction_2	5.54977477020464	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGTTTCTTTTATTGG	NA	False	NA	NA	False	AATAAA	-40	NA	105727633	105748706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_105727856_105730211_105730281_105732812_105733011_105734788_105735010_105747108_105747268_105747929
transcript_13064.nnic	chr12	+	1584	5	NIC	ENSMUSG00000041323.7	novel	3099	18	NA	NA	16093	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_1	14.2653426176871	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGTTTCTTTTATTGG	NA	False	NA	NA	False	AATAAA	-40	NA	105727626	105748706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_105727856_105732812_105733011_105734788_105735010_105747108_105747268_105747929
transcript_13065.nic	chr12	+	1005	4	ISM	ENSMUSG00000041323.7	ENSMUST00000040876.7	3099	18	55200	13601	15901	-13601	internal_fragment	FALSE	canonical	3	37	junction_2	6.54896090146283	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTACTGAGTACCACTGTC	NA	False	NA	NA	False	ATTAAA	-18	NA	105727434	105735105	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_105727856_105730211_105730281_105732812_105733011_105734788
transcript_13067.known	chr12	+	4380	22	FSM	ENSMUSG00000021111.16	ENSMUST00000109901.9	4380	22	0	0	0	0	multi-exon	FALSE	canonical	3	846	junction_12	378.82265398812	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTAAGTAGTGTCTCAT	NA	False	NA	NA	False	NA	NA	NA	105750952	105805066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023
transcript_13070.known	chr12	+	2605	21	FSM	ENSMUSG00000021111.16	ENSMUST00000170002.8	2605	21	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_19	453.97952597006	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTTAATTAGAAAGT	NA	False	NA	NA	False	AATACA	-45	NA	105751130	105803532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105800968_105801044_105803023
transcript_13072.known	chr12	+	2076	12	FSM	ENSMUSG00000021111.16	ENSMUST00000166498.8	2076	12	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_9	335.398664968735	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGCTGTCTCTGTGTTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	105750991	105780328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456
transcript_13076.known	chr12	+	1033	9	FSM	ENSMUSG00000021111.16	ENSMUST00000166735.8	1033	9	0	0	0	0	multi-exon	FALSE	canonical	3	1577	junction_3	94.8235202890085	691	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAGTCTTATTTCTGTGA	NA	False	NA	17	True	AATAAA	-20	NA	105751015	105775968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782
transcript_13083.known	chr12	+	2436	21	FSM	ENSMUSG00000021111.16	ENSMUST00000168186.8	2436	21	0	0	0	0	multi-exon	FALSE	canonical	3	846	junction_12	380.482125072913	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTAGTTAAAGTCTGTAA	NA	False	NA	NA	False	ATTAAA	-13	NA	105750962	105801152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968
transcript_13084.known	chr12	+	1170	9	FSM	ENSMUSG00000021111.16	ENSMUST00000163805.2	1170	9	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_8	273.366512213914	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGTATATTTTTTTATT	4491	False	NA	NA	False	AATAAA	-14	NA	105765943	105777671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295
transcript_13085.known	chr12	+	3022	23	FSM	ENSMUSG00000021111.16	ENSMUST00000021535.14	3022	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_22	451.408218982873	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAATCCCATAGTTGGCTG	NA	False	NA	7	True	AATAAA	-13	NA	105750962	105805198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_105751174_105765909_105766084_105766942_105767010_105771185_105771268_105772745_105772856_105773423_105773478_105774813_105774926_105775601_105775692_105775782_105775922_105777295_105777369_105778532_105778654_105779456_105779542_105784614_105784669_105785038_105785159_105786599_105786710_105789814_105789937_105793202_105793346_105794539_105794641_105795315_105795537_105799358_105799422_105800968_105801044_105803023_105803309_105804788
transcript_13088.known	chr12	+	1742	15	FSM	ENSMUSG00000021115.16	ENSMUST00000021539.16	1742	15	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_12	308.222032678671	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAAGCGTTTATTGAATG	NA	False	NA	23	True	AATAAA	-29	NA	105976574	106041668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106037828_106037901_106039877_106039938_106041265
transcript_13099.known	chr12	+	3711	14	FSM	ENSMUSG00000021115.16	ENSMUST00000085026.12	3711	14	0	0	0	0	multi-exon	FALSE	canonical	3	514	junction_12	169.729126349489	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTATTTGTTTG	NA	False	NA	17	True	NA	NA	NA	105976550	106043685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106039877_106039938_106041265
transcript_1310.known	chr1	+	1404	10	FSM	ENSMUSG00000006304.15	ENSMUST00000006467.14	1404	10	0	0	0	0	multi-exon	FALSE	canonical	3	1867	junction_3	197.32307280632	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAATTC	7848	False	NA	17	True	NA	NA	NA	74275675	74307146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_74276059_74285238_74285274_74287290_74287404_74290412_74290459_74293986_74294174_74295116_74295211_74301617_74301745_74302901_74303003_74303511_74303613_74306929
transcript_13102.known	chr12	+	2520	14	FSM	ENSMUSG00000021115.16	ENSMUST00000221312.2	2520	14	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_12	248.778292970376	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGAAGGGTAATTTATAAAA	NA	False	NA	NA	False	ATTAAA	-22	NA	105976541	106041459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106037901_106039877_106039938_106041265
transcript_13117.known	chr12	+	1509	13	FSM	ENSMUSG00000021115.16	ENSMUST00000072040.7	1509	13	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_12	159.966901958568	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAATCTTTAGTCGTCA	NA	False	NA	NA	False	ATTAAA	-42	NA	105976486	106041479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_105976618_106002798_106002964_106009095_106009152_106017193_106017264_106018018_106018107_106022060_106022170_106022279_106022373_106024101_106024235_106024834_106024956_106025876_106025936_106028888_106029068_106036783_106036875_106041265
transcript_1312.known	chr1	-	1756	11	FSM	ENSMUSG00000006299.14	ENSMUST00000178235.8	1756	11	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_10	361.877106211487	977	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCAGTGTCTGTGTGCAT	NA	False	NA	-5	True	AATAAA	-13	NA	74323839	74319004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_74319469_74319941_74320097_74320247_74320339_74320487_74320592_74320685_74320802_74320894_74320979_74321185_74321331_74321569_74321710_74322252_74322373_74323044_74323204_74323661
transcript_13155.known	chr12	-	2755	13	FSM	ENSMUSG00000056770.16	ENSMUST00000071095.14	2755	13	0	0	0	0	multi-exon	FALSE	canonical	3	469	junction_9	51.1017503505397	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTTTGTTCCTTGTC	NA	False	NA	0	True	ATTAAA	-19	NA	108145573	108072689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108084500_108084616_108085364_108085424_108124012_108124270_108124534_108124608_108126491_108126641_108129231_108129325_108131321_108131432_108145411
transcript_13158.nic	chr12	-	2547	12	NIC	ENSMUSG00000056770.16	novel	2755	13	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	90	junction_9	135.793596411783	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGTTTGTTCCTTGTC	NA	False	NA	0	True	ATTAAA	-19	NA	108145514	108072689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_108073938_108074815_108074977_108077480_108077567_108078388_108078556_108079577_108079653_108084500_108084616_108085364_108085424_108124012_108124270_108124534_108124608_108129231_108129325_108131321_108131432_108145411
transcript_13160.known	chr12	+	2789	12	FSM	ENSMUSG00000021258.11	ENSMUST00000221167.2	2789	12	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_11	12.5217166726353	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTTTATGTGTGAGTACAG	NA	False	NA	24	True	AATAAA	-17	NA	108145837	108169616	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_108146140_108148435_108148468_108152634_108152882_108153437_108153520_108155323_108155456_108159930_108160037_108160600_108160659_108161325_108161496_108161841_108162111_108162597_108162632_108165567_108165643_108168334
transcript_13162.known	chr12	+	2627	11	FSM	ENSMUSG00000021258.11	ENSMUST00000101055.5	2627	11	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	24.24479325546	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATGTGTGAGTACAGCC	NA	False	NA	26	True	AATAAA	-19	NA	108145996	108169618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_108146152_108152619_108152882_108153437_108153520_108155323_108155456_108159930_108160037_108160600_108160659_108161325_108161496_108161841_108162111_108162597_108162632_108165567_108165643_108168334
transcript_13163.known	chr12	-	363	4	FSM	ENSMUSG00000097788.3	ENSMUST00000220796.2	363	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGGCAGACGGCGTTGATG	NA	False	NA	NA	False	NA	NA	NA	108521727	108503643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_108503783_108505656_108505733_108506839_108506898_108521637
transcript_13164.known	chr12	+	6178	5	FSM	ENSMUSG00000021264.13	ENSMUST00000021692.9	6178	5	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	10.779030568655	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTGTTCTTGTTTGTT	NA	False	NA	25	True	AATAAA	-25	NA	108758898	108786074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_108760018_108772404_108772568_108778844_108778906_108780531_108780691_108781398
transcript_13165.known	chr12	-	1976	4	FSM	ENSMUSG00000021265.4	ENSMUST00000021693.4	1976	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	5.09901951359278	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAAGCTCCTCTGTGCGT	NA	False	NA	NA	False	AATAAA	-18	NA	108801809	108791798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_108793415_108793599_108793684_108797122_108797167_108801577
transcript_13170.nic	chr12	+	2678	7	NIC	ENSMUSG00000040877.17	novel	2657	7	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	2	14	junction_1	19.6694913225759	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCGTGGTCATGGTG	4846	False	NA	NA	False	NA	NA	NA	108860193	108994378	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_108860257_108863834_108864652_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
transcript_13179.nnic	chr12	+	2399	5	NIC	ENSMUSG00000040877.17	novel	2657	7	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	31.4245127249413	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCGTGGTCATGGTG	4846	False	NA	NA	False	NA	NA	NA	108860193	108994378	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_108860257_108863834_108864652_108990888_108991060_108992335_108992477_108993171
transcript_13181.nnic	chr12	+	1640	4	NNC	ENSMUSG00000040877.17	novel	2657	7	NA	NA	-17675	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	31.6262900483478	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCGTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	108969052	108994378	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_108969174_108990888_108991060_108992335_108992477_108993171
transcript_13184.nnic	chr12	+	1666	4	NNC	ENSMUSG00000040877.17	novel	2657	7	NA	NA	-5180	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	28.3313724811677	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCGTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	108981547	108994378	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_108981695_108990888_108991060_108992335_108992477_108993171
transcript_13185.known	chr12	+	2657	7	FSM	ENSMUSG00000040877.17	ENSMUST00000167816.8	2657	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	23.6713610367747	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGCCGTGGTCATGGTG	4850	False	NA	NA	False	NA	NA	NA	108860197	108994378	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_108860240_108863834_108864652_108946616_108946765_108958732_108958864_108990888_108991060_108992335_108992477_108993171
transcript_13186.known	chr12	-	1824	11	FSM	ENSMUSG00000021266.17	ENSMUST00000161154.2	1824	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_10	739.608714118486	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCACTGTCTGACCA	NA	False	NA	-35	True	AATAAA	-15	NA	108859123	108825959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_108826260_108827194_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859085
transcript_13187.known	chr12	-	2764	10	FSM	ENSMUSG00000021266.17	ENSMUST00000161410.8	2764	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	620.186073232944	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	-31	True	AATAAA	-19	NA	108859124	108825955	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859085
transcript_13190.known	chr12	-	2831	10	FSM	ENSMUSG00000021266.17	ENSMUST00000109848.10	2831	10	0	0	0	0	multi-exon	FALSE	canonical	3	1835	junction_9	109.614475929657	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCACTGTCTGACCAAGCA	NA	False	NA	-31	True	AATAAA	-19	NA	108860100	108825955	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_108827353_108828728_108828870_108831938_108832226_108833602_108833704_108841039_108841223_108841591_108841712_108846968_108847078_108848620_108848835_108854301_108854475_108859994
transcript_13191.known	chr12	+	1703	5	FSM	ENSMUSG00000040856.18	ENSMUST00000109844.11	1703	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	4.02336923485777	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGGTAACAGAACCAGGAC	NA	False	NA	NA	False	TATAAA	-24	NA	109419380	109426626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_109419653_109420910_109420975_109421418_109421550_109423999_109424142_109425532
transcript_13193.known	chr12	+	1896	10	FSM	ENSMUSG00000021268.18	ENSMUST00000143836.8	1896	10	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	140.228473183437	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAAGCAGTGATGGGTGTG	NA	False	NA	NA	False	NA	NA	NA	109506887	109538155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_109506983_109509582_109509733_109509909_109510626_109510830_109510925_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
transcript_13195.nic	chr12	+	1766	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	187	junction_2	97.0602261485105	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109506880	109538156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
transcript_13199.nic	chr12	+	1810	9	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	241	junction_3	82.0182906430023	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109506880	109538156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515725_109515807_109515913_109515988_109516087_109516246_109524670_109524755_109537824
transcript_132.known	SIRV5	+	1890	17	FSM	SIRV5A	SIRV501	1890	17	0	0	0	0	multi-exon	FALSE	canonical	3	1808	junction_14	3064.59256060247	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1056	10991	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV5_+_1150_1987_2034_2119_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6658_6723_6826_6958_7144_7308_7681_7763_7870_8017_8277_8382_8454_8586_10858
transcript_1320.known	chr1	-	2378	12	FSM	ENSMUSG00000006301.18	ENSMUST00000016309.16	2378	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	38.8406364690682	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTGAGTTGCTGTGGCTT	NA	False	NA	-6	True	AATAAA	-22	NA	74343564	74327405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_74328678_74329029_74329084_74329910_74330007_74330358_74330447_74330589_74330628_74330853_74330894_74331615_74331667_74331993_74332048_74332163_74332229_74333066_74333162_74334356_74334599_74343281
transcript_13201.nic	chr12	+	1685	8	NIC	ENSMUSG00000021268.18	novel	1988	9	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	137.349249457471	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109506880	109538156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_109506983_109509582_109509689_109509909_109510626_109512312_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109537824
transcript_13202.nic	chr12	+	1729	8	NIC	ENSMUSG00000021268.18	novel	1896	10	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_4	128.442792792777	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGCAGTGATGGGTGTGC	NA	False	NA	NA	False	NA	NA	NA	109506880	109538156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_109506983_109509582_109509733_109509909_109510626_109512312_109512426_109515913_109515988_109516087_109516246_109524670_109524755_109537824
transcript_13208.known	chr12	+	1498	3	FSM	ENSMUSG00000021268.18	ENSMUST00000129245.8	1498	3	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	159.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	109506883	109511202	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_109506983_109509582_109509689_109509909
transcript_13209.nic	chr12	+	1561	3	ISM	ENSMUSG00000021268.18	ENSMUST00000143836.8	1896	10	-7	26937	-3	16	intron_retention	FALSE	canonical	3	281	junction_2	112.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGGAGAAATAAAGAGAG	NA	False	NA	NA	False	NA	NA	NA	109506880	109511218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_109506983_109509582_109509733_109509909
transcript_13210.known	chr12	+	2368	11	FSM	ENSMUSG00000097451.12	ENSMUST00000181253.10	2368	11	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	76.4947056991528	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGTGTGAAGTACAA	2865	False	NA	NA	False	NA	NA	NA	109612563	109628143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_109613186_109615587_109615677_109616505_109616592_109617446_109617534_109618292_109618373_109620719_109620867_109622282_109622369_109623221_109623275_109624486_109624556_109626156_109626242_109627179
transcript_13212.known	chr12	-	642	1	FSM	ENSMUSG00000113625.2	ENSMUST00000222259.2	642	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGCTTCAATAGTTCTC	NA	False	NA	NA	False	AATATA	-45	NA	109861527	109860885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_109860900_109861500
transcript_13213.known	chr12	+	2030	1	FSM	ENSMUSG00000075707.7	ENSMUST00000173014.3	2030	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	45	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTTGGTCCGTTTATTT	NA	False	NA	27	True	AATAAA	-24	NA	110245501	110247531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_110245500_110247500
transcript_13220.nnic	chr12	+	2352	13	NNC	ENSMUSG00000017843.15	novel	2367	12	NA	NA	-22	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	278.794428447437	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGTGTGTATTTTCCTA	4898	False	NA	14	True	AATAAA	-16	NA	110452149	110538122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129_110537786_110537822
transcript_13221.nic	chr12	+	1804	12	NIC	ENSMUSG00000017843.15	novel	2790	13	NA	NA	18285	0	combination_of_known_junctions	TRUE	canonical	3	270	junction_1	212.285944692647	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCCTCTTGTATAAGTA	NA	False	NA	13	True	AATAAA	-18	NA	110432025	110537345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_110432455_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
transcript_13223.nnic	chr12	+	1675	12	NNC	ENSMUSG00000017843.15	novel	956	8	NA	NA	-1757	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	278.776903604784	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCCTCTTGTATAAGTA	3163	False	NA	13	True	AATAAA	-18	NA	110450414	110537345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_110450715_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
transcript_13225.known	chr12	+	2367	12	FSM	ENSMUSG00000017843.15	ENSMUST00000221715.2	2367	12	0	0	0	0	multi-exon	FALSE	canonical	3	738	junction_1	90.3704039902189	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGTGTGTATTTTCCTA	4920	False	NA	14	True	AATAAA	-16	NA	110452171	110538122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_110452387_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
transcript_13227.nnic	chr12	+	1600	12	NNC	ENSMUSG00000017843.15	novel	956	8	NA	NA	11702	0	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_1	282.435306715253	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCCTCTTGTATAAGTA	69	False	NA	13	True	AATAAA	-18	NA	110463994	110537345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_110464220_110488924_110489125_110510508_110510620_110512028_110512122_110512204_110512336_110517495_110517556_110519218_110519328_110521276_110521331_110527731_110527903_110534161_110534290_110535387_110535490_110537129
transcript_1323.known	chr1	+	2937	10	FSM	ENSMUSG00000026179.15	ENSMUST00000027370.13	2937	10	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	408.826988068106	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAAGGTCTGAGCTCTCA	NA	False	NA	3	True	NA	NA	NA	74324203	74392843	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_74324297_74325000_74325170_74386543_74386660_74386810_74386924_74387921_74387981_74388466_74388560_74388872_74389037_74389775_74389863_74390695_74390812_74390916
transcript_13230.known	chr12	+	2189	1	FSM	ENSMUSG00000113361.2	ENSMUST00000221143.2	2189	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGAGTAGTTTTGTTC	NA	False	NA	NA	False	NA	NA	NA	110556945	110559134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_110556900_110559100
transcript_13231.known	chr12	+	14342	77	FSM	ENSMUSG00000018707.14	ENSMUST00000018851.14	14342	77	0	0	0	0	multi-exon	TRUE	canonical	3	133	junction_1	148.379081411613	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTCTGCTGTGGGAATCC	6471	False	NA	39	True	AATAAA	-40	NA	110567885	110633379	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_110568289_110578778_110578867_110580478_110580653_110580786_110581043_110581324_110581512_110582773_110583046_110583131_110583360_110584053_110585131_110585622_110585803_110586732_110586883_110587960_110588108_110590942_110591084_110591860_110592038_110592164_110592276_110592355_110592476_110593292_110593533_110594373_110594530_110594666_110594781_110595157_110595269_110595341_110595552_110595710_110595858_110596010_110596178_110596256_110596431_110596931_110597098_110597177_110597367_110598042_110598238_110599073_110599357_110599586_110599688_110600652_110600813_110601934_110602179_110602328_110602513_110602759_110602973_110603539_110603779_110603929_110604087_110605172_110605401_110606167_110606399_110606579_110606721_110606932_110607167_110607252_110607460_110607535_110607658_110608444_110608611_110609556_110609721_110612627_110612758_110614694_110614829_110615433_110615549_110615648_110615811_110615895_110616111_110616207_110616413_110617924_110618099_110618184_110618305_110618507_110618629_110620583_110620780_110621217_110621336_110621849_110622066_110622718_110622932_110623026_110623155_110623476_110623631_110624275_110624423_110624510_110624662_110624774_110625029_110625106_110625242_110625332_110625428_110625523_110625699_110625874_110625951_110627257_110627419_110627587_110627700_110627788_110627974_110628166_110628281_110628951_110629123_110629275_110629494_110629606_110629711_110630969_110631182_110631516_110631671_110632097_110632241_110632391_110632561_110632727_110632856_110632996
transcript_1324.known	chr1	+	2859	9	FSM	ENSMUSG00000026179.15	ENSMUST00000087225.6	2859	9	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	11.428445869846	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGGTCTGAGCTCTCAAT	9363	False	NA	5	True	NA	NA	NA	74371768	74392845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_74371951_74386543_74386660_74386810_74386924_74387921_74387981_74388466_74388560_74388872_74389037_74389775_74389863_74390695_74390812_74390916
transcript_1325.known	chr1	+	740	3	FSM	ENSMUSG00000026179.15	ENSMUST00000113805.8	740	3	0	0	0	0	multi-exon	FALSE	canonical	3	1381	junction_1	89	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGCCAGGTTGAATTTGT	NA	False	NA	6	True	AATAAA	-24	NA	74324088	74326613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_74324297_74325000_74325170_74326250
transcript_13256.known	chr12	-	3281	11	FSM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	0	0	0	0	multi-exon	FALSE	canonical	3	11114	junction_7	1521.95811046165	8643	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAGATTGGGTTGTA	NA	False	NA	NA	False	NA	NA	NA	110662829	110657038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
transcript_13259.known	chr12	-	2852	11	FSM	ENSMUSG00000021270.14	ENSMUST00000021698.13	2852	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_10	4154.7402337571	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGAATGTGTCTTTTCT	NA	False	NA	-5	True	GATAAA	-21	NA	110662723	110657461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_110658084_110658547_110658882_110659037_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662215_110662685
transcript_1327.known	chr1	+	2315	15	FSM	ENSMUSG00000026177.12	ENSMUST00000027368.6	2315	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	14.5525087254426	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAAGAGTTCTAGGTTA	4971	False	NA	NA	False	NA	NA	NA	74414361	74425221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_74414481_74414876_74415011_74415951_74416075_74416315_74416436_74418941_74419049_74419355_74419427_74419767_74419836_74420000_74420157_74420894_74421054_74422596_74422687_74422783_74422904_74423182_74423333_74423855_74423930_74424299_74424454_74424551
transcript_13280.nic	chr12	-	1847	9	ISM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	-50	2104	-50	0	5prime_fragment	FALSE	canonical	3	11114	junction_5	1011.4284144219	989	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTCCAGAAGATGAAGAGGA	NA	False	NA	NA	False	NA	NA	NA	110662879	110659142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_110659307_110659453_110659602_110659745_110659937_110660144_110660311_110660456_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
transcript_1329.nic	chr1	-	1623	12	ISM	ENSMUSG00000033364.14	ENSMUST00000191058.7	6011	20	-72	21863	-51	-21863	5prime_fragment	TRUE	canonical	3	147	junction_10	27.6103346323871	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACTACTTAAGAAGGTTAA	NA	False	NA	NA	False	ATTAAA	-31	NA	74545016	74510523	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_74510579_74510713_74510846_74514144_74514304_74517205_74517291_74518810_74518909_74525139_74525215_74525777_74525957_74529248_74529350_74532063_74532236_74534788_74535013_74539114_74539260_74544818
transcript_13293.nic	chr12	-	1089	5	ISM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	-113	3570	-113	0	5prime_fragment	FALSE	canonical	3	11114	junction_1	618.781261836523	535	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAGAAGATAAAGGAAAAG	NA	False	NA	NA	False	NA	NA	NA	110662942	110660608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
transcript_13294.nic	chr12	-	998	5	ISM	ENSMUSG00000021270.14	ENSMUST00000094361.11	3281	11	-113	3661	-113	-91	5prime_fragment	FALSE	canonical	3	11114	junction_1	618.781261836523	1587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAAAGGAGTCTGATGA	NA	False	NA	15	True	NA	NA	NA	110662942	110660699	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_-_110660778_110661004_110661139_110661485_110661853_110661952_110662115_110662685
transcript_133.known	SIRV5	+	2029	16	FSM	SIRV5A	SIRV505	2029	16	0	0	0	0	multi-exon	FALSE	canonical	3	5578	junction_10	1970.92572045614	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTACCGCCAAAAAATGGG	NA	False	NA	NA	False	NA	NA	NA	1000	10991	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV5_+_1150_1987_2034_2119_2157_2270_2316_3298_3405_3483_3644_5380_5451_5543_5627_6111_6170_6327_6453_6826_6958_7144_7308_7681_7763_7870_8382_8454_8586_10858
transcript_1330.known	chr1	+	3268	8	FSM	ENSMUSG00000026174.10	ENSMUST00000087215.7	3268	8	0	0	0	0	multi-exon	FALSE	canonical	3	963	junction_5	46.4318680148337	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTTTTGTTTTTAAAT	860	False	NA	38	True	AATAAA	-23	NA	74545216	74570001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_74545621_74556228_74556409_74558059_74558176_74561476_74561587_74562662_74562773_74566150_74566250_74566750_74566843_74567844
transcript_13309.known	chr12	+	2384	3	FSM	ENSMUSG00000037957.15	ENSMUST00000095410.8	2384	3	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_2	4	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTTTGTAGAACTCTGAT	5346	False	NA	19	True	AATAAA	-18	NA	110704425	110761462	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_110704712_110745729_110745913_110759547
transcript_13311.known	chr12	+	1351	3	FSM	ENSMUSG00000037957.15	ENSMUST00000193053.6	1351	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	64	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATTTGTTTATCCTTTTT	5298	False	NA	NA	False	ATTAAA	-15	NA	110704377	110770672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_110704712_110745729_110745913_110769838
transcript_13315.nnic	chr12	-	1709	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1770	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_11	66.2311254884822	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9442	False	NA	-3	True	AATATA	-18	NA	110805591	110774231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110805381
transcript_13316.known	chr12	-	1693	12	FSM	ENSMUSG00000056458.17	ENSMUST00000070565.15	1693	12	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_11	66.0974737267458	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7660	False	NA	-3	True	AATATA	-18	NA	110807373	110774231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
transcript_13317.nnic	chr12	-	1618	12	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	79.4107430748666	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7654	False	NA	-3	True	AATATA	-18	NA	110807379	110774231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807260
transcript_13320.nnic	chr12	-	1535	11	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1770	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_10	69.773992289391	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9442	False	NA	-3	True	AATATA	-18	NA	110805591	110774231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110805381
transcript_13321.nic	chr12	-	1530	11	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	80	junction_10	69.6330381356436	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7649	False	NA	-3	True	AATATA	-18	NA	110807384	110774231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807179
transcript_13322.nnic	chr12	-	1444	11	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	83.6035884397315	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7654	False	NA	-3	True	AATATA	-18	NA	110807379	110774231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110792875_110792947_110794474_110794565_110800559_110800675_110807260
transcript_13328.nnic	chr12	-	1548	10	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1770	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_8	78.692086288549	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9442	False	NA	-3	True	AATATA	-18	NA	110805591	110774231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110805381
transcript_13329.nic	chr12	-	1543	10	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_8	78.5509192408354	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7649	False	NA	-3	True	AATATA	-18	NA	110807384	110774231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110807179
transcript_13334.nnic	chr12	-	1391	9	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_4	86.7942070359537	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7649	False	NA	-3	True	AATATA	-18	NA	110807384	110774231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777176_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807179
transcript_13336.nnic	chr12	-	1345	9	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	88.295579589241	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7651	False	NA	-3	True	AATATA	-18	NA	110807382	110774231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110777038_110777213_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807260
transcript_13337.nnic	chr12	-	1374	9	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1770	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_7	83.7383387403882	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9442	False	NA	-3	True	AATATA	-18	NA	110805591	110774231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110805381
transcript_13340.nic	chr12	-	1254	8	NIC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_7	79.9971938283348	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7649	False	NA	-3	True	AATATA	-18	NA	110807384	110774231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807179
transcript_13341.nnic	chr12	-	1171	8	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	94.5211346628847	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	7651	False	NA	-3	True	AATATA	-18	NA	110807382	110774231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_110774556_110774638_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110807260
transcript_13345.nnic	chr12	-	1457	8	NNC	ENSMUSG00000056458.17	novel	1693	12	NA	NA	1770	0	intron_retention	FALSE	canonical	3	56	junction_6	87.1988110759615	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGTTTGTTTCATTT	9442	False	NA	-3	True	AATATA	-18	NA	110805591	110774231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_110774840_110776342_110776458_110778212_110778315_110779948_110780128_110781401_110781451_110781564_110781644_110800559_110800675_110805381
transcript_13358.known	chr12	-	2029	5	FSM	ENSMUSG00000021276.11	ENSMUST00000043716.9	2029	5	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_1	85.0951673128386	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTTCCTGTCTCAGCCT	3349	False	NA	NA	False	TATAAA	-29	NA	110855579	110839043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_110840564_110843274_110843405_110846118_110846249_110850323_110850493_110855499
transcript_13360.known	chr12	-	723	5	FSM	ENSMUSG00000021276.11	ENSMUST00000222457.2	723	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	152.938508885107	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACTTTGTAGGAGGTTA	3378	False	NA	-19	True	AATAAA	-8	NA	110855550	110841467	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_110841711_110843274_110843405_110846118_110846249_110850323_110850493_110855499
transcript_13362.nnic	chr12	-	1269	5	NNC	ENSMUSG00000021276.11	novel	744	5	NA	NA	-24	3	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	211.668815605889	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTAGTTATTTCTGTCTT	3325	False	NA	0	True	AATAAA	-21	NA	110855603	110844025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_110844549_110845130_110845474_110846118_110846249_110850323_110850493_110855499
transcript_13363.known	chr12	-	536	4	FSM	ENSMUSG00000021276.11	ENSMUST00000221102.2	536	4	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	203.882318997995	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGTCACCGGGCCCTGTGA	3375	False	NA	NA	False	NA	NA	NA	110855553	110840380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_110840564_110846118_110846249_110850323_110850493_110855499
transcript_13364.nnic	chr12	-	805	4	NNC	ENSMUSG00000021276.11	novel	744	5	NA	NA	-24	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	208.591040608705	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTAGTTATTTCTGTCTT	3325	False	NA	0	True	AATAAA	-21	NA	110855603	110844025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_110844428_110846118_110846249_110850323_110850493_110855499
transcript_13365.nnic	chr12	-	1914	4	NNC	ENSMUSG00000021276.11	novel	445	4	NA	NA	-24	3	intron_retention	FALSE	canonical	3	5	junction_1	206.236649399556	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTAGTTATTTCTGTCTT	3325	False	NA	0	True	AATAAA	-21	NA	110855603	110844025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_110844549_110845130_110846249_110850323_110850493_110855499
transcript_13366.known	chr12	-	702	4	FSM	ENSMUSG00000021276.11	ENSMUST00000223407.2	702	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	192.582449875372	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGCTGCTCTTTCTTTTTT	3370	False	NA	-2	True	AATACA	-15	NA	110855558	110845129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_110845474_110846118_110846249_110850323_110850493_110855499
transcript_13368.known	chr12	-	633	3	FSM	ENSMUSG00000021276.11	ENSMUST00000221963.2	633	3	0	0	0	0	multi-exon	FALSE	canonical	3	430	junction_1	12	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTATGTCAGGTTGTGGTC	3363	False	NA	NA	False	NA	NA	NA	110855565	110845850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_110846249_110850323_110850493_110855499
transcript_13369.known	chr12	+	438	1	FSM	ENSMUSG00000096942.2	ENSMUST00000181233.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13564	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	NA	False	NA	NA	False	NA	NA	NA	110864547	110864985	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_110864500_110865000
transcript_1337.known	chr1	+	1488	8	FSM	ENSMUSG00000026172.13	ENSMUST00000113733.10	1488	8	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	21.8136822818587	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGGCTTGTGCCTTTCCTC	1131	False	NA	4	True	CATAAA	-16	NA	74627447	74631283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_74627553_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
transcript_13370.nnic	chr12	-	1611	4	NNC	ENSMUSG00000037904.15	novel	1563	4	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	38.9386982604994	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGGATCTGCCTGGTCT	NA	False	NA	-7	True	NA	NA	NA	110945457	110942860	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_110943983_110944079_110944205_110944381_110944562_110945273
transcript_13371.known	chr12	-	1563	4	FSM	ENSMUSG00000037904.15	ENSMUST00000135131.2	1563	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	45.784519460427	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGAGGGATCTGCCTGGT	NA	False	NA	-9	True	NA	NA	NA	110945429	110942862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_110943983_110944097_110944205_110944381_110944562_110945273
transcript_13372.known	chr12	-	2577	3	FSM	ENSMUSG00000037904.15	ENSMUST00000128353.8	2577	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	17	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTTCGTCTTGACTGGAG	NA	False	NA	NA	False	AAAAAG	-22	NA	110945474	110941786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_110943983_110944381_110944562_110945273
transcript_13373.known	chr12	-	1706	3	FSM	ENSMUSG00000037904.15	ENSMUST00000043459.13	1706	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	30.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGGATCTGCCTGGTCT	NA	False	NA	-7	True	NA	NA	NA	110945455	110942860	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_110944205_110944381_110944562_110945273
transcript_13374.nnic	chr12	+	1700	12	NNC	ENSMUSG00000021278.8	novel	1024	7	NA	NA	-316	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	8.49696105130758	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGATAGCCTGGTCCTA	NA	False	NA	28	True	AATAAA	-21	NA	111237212	111242686	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_111237456_111238130_111238250_111238331_111238377_111240576_111240665_111240792_111241011_111241144_111241283_111241387_111241497_111241590_111241674_111241778_111241927_111242005_111242184_111242266_111242361_111242449
transcript_13375.known	chr12	+	1701	12	FSM	ENSMUSG00000021278.8	ENSMUST00000021707.8	1701	12	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	7.23969772438711	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCTGTCTCAGCCTCCA	NA	False	NA	NA	False	NA	NA	NA	111237528	111242860	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_111237599_111238130_111238250_111238331_111238377_111240576_111240665_111240792_111241011_111241144_111241283_111241387_111241497_111241590_111241674_111241778_111241927_111242005_111242184_111242266_111242361_111242449
transcript_13378.known	chr12	+	670	4	FSM	ENSMUSG00000087075.3	ENSMUST00000150384.3	670	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.09120616516523	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTGCTTCTGCTAGTGG	NA	False	NA	NA	False	NA	NA	NA	111373242	111378524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_111373302_111374958_111375046_111376620_111376778_111378157
transcript_13381.known	chr12	+	1969	11	FSM	ENSMUSG00000021282.18	ENSMUST00000050993.11	1969	11	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	700.620753332357	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGACTTTGGGCTATGA	NA	False	NA	18	True	AATAAA	-19	NA	111505215	111511357	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_111505382_111505841_111506122_111506234_111506317_111506563_111506737_111506894_111507007_111508139_111508280_111508585_111508745_111509113_111509276_111509533_111509699_111509960_111510096_111510962
transcript_13384.known	chr12	+	4050	12	FSM	ENSMUSG00000021282.18	ENSMUST00000166123.9	4050	12	0	0	0	0	multi-exon	FALSE	canonical	3	1736	junction_1	190.905151474506	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCACTTGGGGTTTTTTTT	NA	False	NA	12	True	AAAACA	-18	NA	111504449	111513186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_111504674_111504788_111504983_111505841_111506122_111506234_111506317_111506563_111506737_111506894_111507007_111508139_111508280_111508585_111508745_111509113_111509276_111509533_111509699_111509960_111510096_111510962
transcript_13387.known	chr12	+	2807	18	FSM	ENSMUSG00000007411.17	ENSMUST00000221459.2	2807	18	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_16	68.4977205187368	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGTGTTTTTCTAAG	1264	False	NA	89	True	TTTAAA	-20	NA	111541484	111622594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111619823_111619869_111621703
transcript_13388.nic	chr12	+	1961	9	ISM	ENSMUSG00000007411.17	ENSMUST00000221459.2	2807	18	52774	-61	3316	0	3prime_fragment	FALSE	canonical	3	315	junction_7	92.5141036545239	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTGCACTGTCTCCTAC	1598	False	NA	NA	False	ATTAAA	-21	NA	111594258	111622655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111618391_111618419_111619823_111619869_111621703
transcript_13392.known	chr12	+	3365	17	FSM	ENSMUSG00000007411.17	ENSMUST00000084953.13	3365	17	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_15	118.351634441608	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTGCACTGTCTCCTAC	740	False	NA	NA	False	ATTAAA	-21	NA	111540960	111622655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111619823_111619869_111621703
transcript_13394.known	chr12	+	3321	16	FSM	ENSMUSG00000007411.17	ENSMUST00000075281.8	3321	16	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_15	105.235101875119	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACCTTGCACTGTCTCC	736	False	NA	NA	False	ATTAAA	-18	NA	111540956	111622652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_111541536_111559010_111559203_111570944_111570999_111581829_111581879_111584751_111584818_111589678_111589750_111590920_111590978_111593509_111593747_111593912_111594033_111594248_111594349_111594623_111594737_111595395_111595550_111600050_111600269_111606370_111606475_111613904_111614163_111621703
transcript_13398.nic	chr12	+	1591	4	ISM	ENSMUSG00000007411.17	ENSMUST00000221753.2	2394	18	52774	20765	3316	6424	internal_fragment	FALSE	canonical	3	430	junction_2	41.0636362518253	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTACATTTTGGCTTCAACA	1598	False	NA	17	True	AATAAA	-14	NA	111594258	111601284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr12_+_111594349_111594623_111594737_111595395_111595550_111600050
transcript_1340.known	chr1	+	1890	8	FSM	ENSMUSG00000026172.13	ENSMUST00000027358.11	1890	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	42.4562199476696	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCTCTGCCTTCTGA	1142	False	NA	NA	False	NA	NA	NA	74627458	74631602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_74627647_74628644_74629038_74629118_74629259_74629423_74629619_74629829_74629894_74630118_74630289_74630747_74630866_74630980
transcript_13406.known	chr12	-	1472	8	FSM	ENSMUSG00000001270.10	ENSMUST00000001304.9	1472	8	0	0	0	0	multi-exon	FALSE	canonical	3	7551	junction_6	311.265160273359	4863	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638772	111635794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_111636176_111636258_111636449_111636595_111636720_111637306_111637479_111637648_111637782_111637858_111638014_111638199_111638408_111638663
transcript_13457.known	chr12	-	719	3	FSM	ENSMUSG00000001270.10	ENSMUST00000222513.2	719	3	0	0	0	0	multi-exon	FALSE	canonical	3	7551	junction_1	185	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCGGGGACACACTGCTGCA	NA	False	NA	NA	False	NA	NA	NA	111638717	111637556	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_111638014_111638199_111638408_111638663
transcript_13458.known	chr12	-	2839	2	FSM	ENSMUSG00000001270.10	ENSMUST00000222705.2	2839	2	0	0	0	0	multi-exon	FALSE	canonical	3	8476	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTGTTGCTTCTCC	NA	False	NA	-8	True	AATAAA	-21	NA	111638716	111635794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_111636176_111636258
transcript_13461.known	chr12	+	2131	4	FSM	ENSMUSG00000060950.13	ENSMUST00000168338.2	2131	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	100.883871632464	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTGTCTTGTTCCCACA	NA	False	NA	5	True	AATAAA	-17	NA	111644538	111650336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_111644735_111645036_111645397_111647235_111647503_111649028
transcript_13463.known	chr12	+	2433	3	FSM	ENSMUSG00000060950.13	ENSMUST00000084947.10	2433	3	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_2	1	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTGTCTTGTTCCCACA	NA	False	NA	5	True	AATAAA	-17	NA	111644538	111650336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_111645397_111647235_111647503_111649028
transcript_13464.known	chr12	-	2139	2	FSM	ENSMUSG00000049792.7	ENSMUST00000054636.7	2139	2	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	0	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCCCCCTGTGCTGTTC	NA	False	NA	NA	False	CATAAA	-20	NA	111679691	111675921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_111677847_111679477
transcript_13466.known	chr12	+	671	6	FSM	ENSMUSG00000037787.15	ENSMUST00000163220.10	671	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	244.938686205344	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTGCTTTTGGGTGTGG	1560	False	NA	NA	False	NA	NA	NA	111679713	111721487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_111679853_111689045_111689244_111690773_111690838_111696455_111696547_111717620_111717710_111721397
transcript_13468.known	chr12	+	1065	5	FSM	ENSMUSG00000037787.15	ENSMUST00000040519.12	1065	5	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_3	10.0343161201947	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGTGCAAGTTGAGAATAA	1541	False	NA	NA	False	TTTAAA	-1	NA	111679694	111700654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_111679853_111689045_111689244_111690773_111690838_111696455_111696547_111700100
transcript_13472.known	chr12	+	367	3	FSM	ENSMUSG00000037787.15	ENSMUST00000159557.2	367	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	6.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCAGAACTTGTCCTTC	1564	False	NA	NA	False	AAGAAA	-28	NA	111679717	111689217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_111679853_111688180_111688241_111689045
transcript_13474.nnic	chr12	+	2383	16	NIC	ENSMUSG00000021288.20	novel	2504	16	NA	NA	30	0	combination_of_known_splicesites	FALSE	canonical	2	52	junction_13	31.1312633144811	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCTACCAGAATGAAAGCCT	NA	False	NA	NA	False	ATTAAA	-18	NA	111725312	111773145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755894_111761981_111762113_111772441_111772509_111772748
transcript_13475.known	chr12	+	2504	16	FSM	ENSMUSG00000021288.20	ENSMUST00000084941.12	2504	16	0	0	0	0	multi-exon	FALSE	canonical	2	29	junction_13	35.2026514152935	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGAGTGAGTGCGTGCCA	NA	False	NA	NA	False	ATTAAA	-18	NA	111725282	111773209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755921_111761981_111762113_111772441_111772509_111772748
transcript_13476.known	chr12	+	2268	16	FSM	ENSMUSG00000021288.20	ENSMUST00000122300.8	2268	16	0	0	0	0	multi-exon	FALSE	canonical	2	29	junction_13	39.7419453754119	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTTCATAACTATTTTT	NA	False	NA	NA	False	ATTAAA	-34	NA	111725446	111773161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755782_111755921_111761981_111762113_111772441_111772509_111772748
transcript_13477.nnic	chr12	+	2398	15	NIC	ENSMUSG00000021288.20	novel	2261	14	NA	NA	30	0	combination_of_known_splicesites	FALSE	canonical	2	31	junction_13	41.916157811926	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCTGTGTCTTGTGTCTGT	NA	False	NA	9	True	AATAAA	-13	NA	111725312	111761329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_111725477_111738752_111739015_111740786_111741018_111742357_111742437_111743245_111743472_111744453_111744542_111745032_111745135_111748085_111748260_111748377_111748478_111751705_111751756_111751868_111751937_111753921_111754031_111755758_111755894_111760082_111760134_111760770
transcript_1348.known	chr1	-	1451	10	FSM	ENSMUSG00000026171.13	ENSMUST00000113721.8	1451	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	27.6463557752974	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAGCCTATGTGGTATGA	NA	False	NA	NA	False	AATAAA	-25	NA	74640536	74632911	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_74633562_74633718_74633854_74634367_74634458_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637757_74637851_74637952_74638224_74638300_74640483
transcript_13486.known	chr12	-	2422	8	FSM	ENSMUSG00000021287.13	ENSMUST00000021715.6	2422	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_7	12.8809303758284	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCAACACTTGCAAATTATT	NA	False	NA	NA	False	AATAAA	-22	NA	111780275	111769626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_111771107_111771177_111771225_111771348_111771562_111774266_111774422_111776185_111776399_111777291_111777430_111778494_111778654_111780258
transcript_13488.known	chr12	+	806	3	FSM	ENSMUSG00000021288.20	ENSMUST00000141435.2	806	3	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	18.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTGTTCATAACTATTTT	2854	False	NA	NA	False	ATTAAA	-33	NA	111761785	111773160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_111762113_111772441_111772509_111772748
transcript_13490.known	chr12	+	1265	8	FSM	ENSMUSG00000021286.9	ENSMUST00000221375.2	1265	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_5	290.764860465691	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TATAAAGTGTATAATTAAAA	NA	False	NA	-19	True	ATTAAA	-22	NA	111780668	111794785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111792009_111792067_111793976_111794120_111794251
transcript_13493.known	chr12	+	1308	7	FSM	ENSMUSG00000021286.9	ENSMUST00000021714.9	1308	7	0	0	0	0	multi-exon	FALSE	canonical	3	470	junction_5	111.029525602677	711	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCAGGCTCTGGCCTCA	NA	False	NA	16	True	ATTAAA	-17	NA	111780603	111794820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_111780812_111789675_111789727_111790188_111790358_111791286_111791363_111791450_111791543_111793976_111794120_111794251
transcript_13500.known	chr12	-	612	4	FSM	ENSMUSG00000021290.7	ENSMUST00000222874.2	612	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	1208.36593059479	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCTGCTTCCCCTGAGT	NA	False	NA	-8	True	AATAAA	-17	NA	111933328	111927809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_111927973_111928866_111928891_111929663_111929788_111933027
transcript_13501.known	chr12	-	366	4	FSM	ENSMUSG00000021290.7	ENSMUST00000021719.7	366	4	0	0	0	0	multi-exon	TRUE	canonical	3	2424	junction_1	129.659382828839	1647	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTGCTTCCCCTGAGTA	NA	False	NA	-7	True	AATAAA	-18	NA	111933411	111927808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_111927973_111928866_111928891_111929663_111929788_111933357
transcript_13503.known	chr12	+	2722	15	FSM	ENSMUSG00000037686.7	ENSMUST00000079400.6	2722	15	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_3	6.52467842666814	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTTGGCCTGGATGGGT	NA	False	NA	2	True	AATAAA	-16	NA	112073112	112093993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_112073408_112078625_112078735_112079414_112079527_112080813_112080940_112082000_112082085_112082834_112082962_112086387_112086501_112087298_112087482_112087586_112087701_112088183_112088298_112089377_112089474_112089723_112089888_112091243_112091331_112092745_112092846_112093095
transcript_13505.known	chr12	-	2380	4	FSM	ENSMUSG00000054013.7	ENSMUST00000066791.7	2380	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.16024689946929	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTGTGTGGATGAGGAG	NA	False	NA	-10	True	AATAAA	-20	NA	112477606	112466622	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_112468357_112469675_112469755_112470967_112471106_112477177
transcript_13506.known	chr12	+	1777	13	FSM	ENSMUSG00000011148.15	ENSMUST00000021726.8	1777	13	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	10.1005362893924	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCACCGAGAGGTCATTAC	NA	False	NA	NA	False	AATAAA	-19	NA	112586478	112607773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_112586745_112594734_112594838_112598687_112598751_112599128_112599180_112599502_112599570_112600577_112600686_112600813_112600896_112601034_112601162_112601864_112602020_112602827_112602953_112604618_112604717_112606045_112606196_112607391
transcript_13509.known	chr12	+	924	4	FSM	ENSMUSG00000064326.14	ENSMUST00000021728.12	924	4	0	0	0	0	multi-exon	FALSE	canonical	3	1700	junction_3	44.6542271235322	689	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGGACTCCCTCCCTTCCA	6855	False	NA	17	True	AATAAA	-17	NA	112611112	112615579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_112611519_112613271_112613467_112614258_112614416_112615413
transcript_1351.nic	chr1	-	1572	9	NIC	ENSMUSG00000026171.13	novel	1479	10	NA	NA	-3	0	intron_retention	FALSE	canonical	3	94	junction_3	8.63767185067828	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTAGCCTATGTGGTATGA	NA	False	NA	NA	False	AATAAA	-25	NA	74640559	74632911	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_74633562_74633718_74633854_74634367_74634461_74634789_74634928_74635024_74635097_74637520_74637591_74637688_74637952_74638224_74638300_74640483
transcript_13512.known	chr12	+	333	3	FSM	ENSMUSG00000064326.14	ENSMUST00000109755.5	333	3	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	805	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGGCCACAGACAGCACAA	7143	False	NA	-30	True	NA	NA	NA	112611400	112615471	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_112611519_112614258_112614416_112615413
transcript_13514.known	chr12	+	1317	1	FSM	ENSMUSG00000064326.14	ENSMUST00000222729.2	1317	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTCCCTCCCTTCCATCT	NA	False	NA	20	True	AATAAA	-20	NA	112614265	112615582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_112614300_112615600
transcript_13516.known	chr12	+	1982	11	FSM	ENSMUSG00000052160.8	ENSMUST00000063888.5	1982	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	2.92574776766556	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTGTTCTCTCT	4280	False	NA	NA	False	AATAAA	-45	NA	112727088	112735424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_112727218_112728959_112729044_112729830_112729998_112730396_112730581_112730881_112731003_112731431_112731560_112733136_112733338_112733931_112734072_112734187_112734354_112734458_112734556_112734859
transcript_13517.nnic	chr12	-	1363	7	NNC	ENSMUSG00000118667.1	novel	11349	7	NA	NA	6859	-9986	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.577350269189626	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAAAAGCAGGATAAAA	NA	False	NA	NA	False	AATAGA	-25	NA	112759418	112748613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_-_112749216_112749335_112749512_112749782_112749925_112750608_112750711_112751520_112751620_112751742_112751799_112759232
transcript_13518.known	chr12	+	1960	5	FSM	ENSMUSG00000037594.12	ENSMUST00000037014.11	1960	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	3.74165738677394	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTTGTTGACTCATT	3901	False	NA	17	True	ATTAAA	-19	NA	112772556	112779872	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_112773429_112774493_112774631_112775802_112775933_112778082_112778200_112779168
transcript_13520.known	chr12	-	2425	2	FSM	ENSMUSG00000047832.10	ENSMUST00000062092.7	2425	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGGAGCCTTTTTTT	9646	False	NA	0	True	ATTAAA	-19	NA	112793009	112783848	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_112785733_112792468
transcript_13521.known	chr12	-	1994	2	FSM	ENSMUSG00000047832.10	ENSMUST00000220899.2	1994	2	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_1	0	404	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGGAATGTGTTAGGAGC	9612	False	NA	-8	True	ATTAAA	-11	NA	112793043	112783856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_112785733_112792925
transcript_13523.known	chr12	-	734	5	FSM	ENSMUSG00000002804.5	ENSMUST00000002881.5	734	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	82.3995600716412	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATAAAGCTTGTGTAAGT	8854	False	NA	-32	True	GGGGCT	-44	NA	112905737	112898374	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_112898671_112901975_112902178_112902414_112902480_112902898_112902943_112905610
transcript_13524.known	chr12	-	1241	5	FSM	ENSMUSG00000002804.5	ENSMUST00000221397.2	1241	5	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_2	18.0277563773199	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCATGCGTAACATGAACT	8847	False	NA	NA	False	ATTAAA	-15	NA	112905744	112897910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_112898671_112901975_112902214_112902414_112902480_112902898_112902943_112905610
transcript_13525.known	chr12	-	945	4	FSM	ENSMUSG00000002804.5	ENSMUST00000222793.2	945	4	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	7.71722460186015	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGCTTGTGTAAGTTTTA	8884	False	NA	-28	True	NA	NA	NA	112905707	112898370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_112898671_112901975_112902480_112902898_112902943_112905610
transcript_13526.known	chr12	-	355	4	FSM	ENSMUSG00000002804.5	ENSMUST00000221497.2	355	4	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	100.422441051125	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGATGACGCCCAGGCCT	8861	False	NA	NA	False	NA	NA	NA	112905730	112898544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_112898671_112902414_112902480_112902898_112902943_112905610
transcript_13528.known	chr12	-	2615	18	FSM	ENSMUSG00000011158.9	ENSMUST00000011302.9	2615	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	37.0119217677383	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTGTGTGTTTATGTGT	NA	False	NA	-3	True	NA	NA	NA	112964324	112923704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_112923979_112924729_112924902_112925342_112925395_112925995_112926253_112926996_112927053_112927129_112927212_112927803_112927866_112929348_112929613_112932884_112932978_112933061_112933102_112933716_112933844_112935881_112935976_112937091_112937242_112943304_112943378_112946646_112946677_112951536_112951713_112956683_112956765_112963792
transcript_13529.known	chr12	+	2057	4	FSM	ENSMUSG00000002803.15	ENSMUST00000002880.7	2057	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	3.55902608401044	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAACAAGAACCAAATGTAG	NA	False	NA	NA	False	AATAAA	-9	NA	112940182	112942550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_112940603_112940678_112940770_112940872_112940992_112941123
transcript_13530.known	chr12	+	2789	20	FSM	ENSMUSG00000021144.15	ENSMUST00000109727.9	2789	20	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_4	117.588629860953	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAAGCCCTTCTGCGTCTT	9323	False	NA	23	True	ATTAAA	-40	NA	113061897	113100825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_113062066_113075765_113075834_113080607_113080702_113083830_113083882_113084446_113084574_113084642_113084707_113086736_113086855_113090394_113090498_113091234_113091335_113091651_113091841_113093739_113093815_113094153_113094213_113094504_113094621_113094935_113095088_113095192_113095383_113095507_113095598_113096804_113096958_113099416_113099449_113099900_113100053_113100137
transcript_13533.known	chr12	+	1439	7	FSM	ENSMUSG00000006356.11	ENSMUST00000084882.9	1439	7	0	0	0	0	multi-exon	FALSE	canonical	3	743	junction_5	14.1745076340121	417	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCAGTGTCGTGTGTGTG	5622	False	NA	30	True	AATAAA	-23	NA	113103855	113109126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_113104235_113107078_113107232_113107634_113107776_113107848_113107918_113108018_113108114_113108429_113108488_113108582
transcript_13540.nnic	chr12	+	476	6	NNC	ENSMUSG00000006360.12	novel	445	5	NA	NA	-214	0	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_1	164.865278333553	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTGTTTTTGTCTGCT	NA	False	NA	15	True	AATAAA	-15	NA	113115417	113117499	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_113115517_113115701_113115774_113116900_113116996_113117074_113117133_113117237_113117285_113117394
transcript_13541.known	chr12	+	445	5	FSM	ENSMUSG00000006360.12	ENSMUST00000006523.12	445	5	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_4	13.838352503098	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCCTGTGTTTTTGTCTG	NA	False	NA	13	True	AATAAA	-13	NA	113115631	113117497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_113115774_113116900_113116996_113117074_113117133_113117237_113117285_113117394
transcript_13544.known	chr12	+	2441	8	FSM	ENSMUSG00000037466.14	ENSMUST00000049271.13	2441	8	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_3	28.4088230043027	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTCGCTGTCTCTGAAA	NA	False	NA	NA	False	TATAAA	-11	NA	113120040	113128164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_113120192_113120294_113120374_113120780_113120984_113121197_113121348_113121688_113121788_113124922_113125010_113125332_113125513_113126672
transcript_13546.nnic	chr12	+	1076	6	NNC	ENSMUSG00000037466.14	novel	4000	9	NA	NA	-47	1205	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	95.4303934813223	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGTGGTGGCGCATGCCT	NA	False	NA	NA	False	NA	NA	NA	113119993	113122414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_113120192_113120294_113120374_113120780_113120984_113121090_113121348_113121688_113121788_113122174
transcript_13547.nnic	chr12	+	969	6	NNC	ENSMUSG00000037466.14	novel	2441	8	NA	NA	-47	1205	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_5	67.517108942845	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGTGGTGGCGCATGCCT	NA	False	NA	NA	False	NA	NA	NA	113119993	113122414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_113120192_113120294_113120374_113120780_113120984_113121197_113121348_113121688_113121788_113122174
transcript_13549.nnic	chr12	+	766	5	NNC	ENSMUSG00000037466.14	novel	584	6	NA	NA	-47	1205	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_2	98.7572782127981	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAGTGGTGGCGCATGCCT	NA	False	NA	NA	False	NA	NA	NA	113119993	113122414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr12_+_113120192_113120294_113120374_113121197_113121348_113121688_113121788_113122174
transcript_13551.known	chr12	+	1958	3	FSM	ENSMUSG00000042063.12	ENSMUST00000073551.6	1958	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	2	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACTTGTGTAATGTCCT	NA	False	NA	17	True	NA	NA	NA	116011343	116024212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_116011487_116018341_116018469_116022524
transcript_13552.known	chr12	-	1404	3	FSM	ENSMUSG00000042050.9	ENSMUST00000221029.2	1404	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAAGTATTAGTTTTATT	NA	False	NA	NA	False	AATAAA	-32	NA	116226606	116218657	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_-_116219872_116221040_116221095_116226470
transcript_13554.known	chr12	+	4684	29	FSM	ENSMUSG00000042029.8	ENSMUST00000084828.5	4684	29	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	40.0130559050061	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATCTTGTTTAAAAGTGAC	NA	False	NA	NA	False	TATAAA	-30	NA	116369021	116425231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_116369082_116369321_116369498_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
transcript_13555.nic	chr12	+	3616	28	NIC	ENSMUSG00000042029.8	novel	4684	29	NA	NA	-42	-934	combination_of_known_junctions	FALSE	canonical	3	91	junction_1	42.7865791811485	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTCTTTTGTATATTG	NA	False	NA	7	True	AATAGA	-24	NA	116368979	116424297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr12_+_116369082_116370817_116370931_116375994_116376184_116376680_116376796_116378357_116378513_116379044_116379180_116382842_116382938_116384307_116384378_116386815_116386903_116388241_116388335_116389398_116389525_116390195_116390376_116391275_116391429_116393273_116393497_116393714_116393819_116398203_116398378_116401590_116401662_116402217_116402369_116402484_116402659_116403378_116403496_116403579_116403721_116404161_116404262_116406556_116406745_116407920_116408062_116411276_116411381_116413995_116414097_116415886_116415987_116424183
transcript_13559.known	chr12	+	2957	10	FSM	ENSMUSG00000021175.16	ENSMUST00000021592.16	2957	10	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_2	34.4673758792282	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTTGTCACCTGTCTGT	NA	False	NA	14	True	AATAAA	-14	NA	117807249	117842441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr12_+_117807693_117828764_117828900_117833740_117833873_117835818_117836173_117837455_117837528_117837630_117837802_117838418_117838542_117839309_117839460_117840640_117840778_117841201
transcript_1356.known	chr1	+	485	2	FSM	ENSMUSG00000033257.15	ENSMUST00000153636.8	485	2	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTTTCCTGTTTGGATC	NA	False	NA	NA	False	AATAAA	-19	NA	74700975	74712414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_74701049_74712002
transcript_13563.known	chr13	+	670	4	FSM	ENSMUSG00000097709.9	ENSMUST00000191585.7	670	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	5.24933858267454	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTCCCCTCTTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	3528245	3539283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_3528353_3529908_3530002_3535048_3535221_3538985
transcript_13564.known	chr13	+	2568	4	FSM	ENSMUSG00000097709.9	ENSMUST00000221008.2	2568	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	6.18241233033047	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTATGGACAAGGTTGT	NA	False	NA	NA	False	TTTAAA	-17	NA	3528266	3544398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_3528353_3529908_3530002_3535048_3535221_3542181
transcript_13566.nic	chr13	+	684	4	NIC	ENSMUSG00000097709.9	novel	593	5	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	13.1993265821489	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGTTTTTGCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	3528214	3542406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_3528391_3529908_3530002_3535030_3535221_3542181
transcript_13567.known	chr13	+	630	4	FSM	ENSMUSG00000097709.9	ENSMUST00000186610.7	630	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	9.84321537348893	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGGTCCATATGGCTTC	NA	False	NA	NA	False	NA	NA	NA	3528303	3539263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_3528391_3529908_3530002_3535048_3535221_3538985
transcript_13569.nic	chr13	+	666	4	NIC	ENSMUSG00000097709.9	novel	593	5	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	6.18241233033047	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGTTTTTGCCTGCTT	NA	False	NA	NA	False	NA	NA	NA	3528214	3542406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_3528391_3529908_3530002_3535048_3535221_3542181
transcript_13572.known	chr13	+	4303	11	FSM	ENSMUSG00000021218.11	ENSMUST00000223396.2	4303	11	0	0	0	0	multi-exon	FALSE	canonical	3	1666	junction_3	147.697833430284	691	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGTGCTTTTTTCTTA	NA	False	NA	NA	False	ATTAAA	-14	NA	3588062	3617871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_3588344_3598862_3598971_3600988_3601089_3604411_3604547_3606313_3606513_3606925_3607058_3609991_3610092_3611865_3612038_3614539_3614685_3614858_3614914_3614995
transcript_13577.known	chr13	-	8338	20	FSM	ENSMUSG00000033799.11	ENSMUST00000096069.5	8338	20	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	12.4522356123369	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTTGTAGTCTGTGTGC	NA	False	NA	NA	False	AATAAA	-15	NA	3661108	3616034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_3616668_3616917_3617033_3617435_3617618_3618751_3618858_3619487_3619642_3620311_3620438_3623486_3627201_3631751_3632194_3634499_3635374_3638297_3638535_3639940_3640649_3644130_3644194_3644292_3644366_3645496_3645601_3646776_3646878_3649651_3649752_3649836_3649857_3649938_3650063_3650191_3650335_3660789
transcript_13578.known	chr13	+	4453	6	FSM	ENSMUSG00000033781.8	ENSMUST00000042288.8	4453	6	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_4	6.61513416341649	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCGAGTTCGAGGATTTG	NA	False	NA	NA	False	AATAAA	-18	NA	3684031	3703822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_3684176_3692064_3692253_3693474_3693626_3694915_3695051_3699318_3699511_3700179
transcript_1358.known	chr1	+	1892	9	FSM	ENSMUSG00000026170.7	ENSMUST00000027356.7	1892	9	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_5	1.98431348329844	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTGGGGGGGTCTTTGT	NA	False	NA	NA	False	AATAAA	-14	NA	74752732	74777051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_74753051_74771077_74771269_74774435_74774636_74774712_74774911_74775022_74775196_74775839_74776007_74776175_74776258_74776337_74776551_74776701
transcript_13580.known	chr13	-	2680	12	FSM	ENSMUSG00000021215.16	ENSMUST00000091853.12	2680	12	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_9	26.5501241222916	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTTTCCTCCTAATTGT	NA	False	NA	NA	False	TTTAAA	-15	NA	3968220	3933332	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_3934474_3934802_3934990_3936047_3936219_3936537_3936796_3937370_3937448_3937570_3937668_3937977_3938041_3938354_3938523_3938870_3938979_3957796_3957857_3962867_3962935_3967937
transcript_13581.known	chr13	-	3871	10	FSM	ENSMUSG00000021215.16	ENSMUST00000099946.6	3871	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_9	50.6888353061239	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGCAGCATTTCTGTTGG	NA	False	NA	NA	False	AATAAA	-18	NA	3943578	3932017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_3934474_3934802_3934990_3936047_3936219_3936537_3936796_3937370_3937448_3937570_3937668_3937977_3938041_3938354_3938523_3938870_3938979_3943292
transcript_13582.nnic	chr13	-	1019	4	NNC	ENSMUSG00000021215.16	novel	2680	12	NA	NA	8	-6237	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	77.8888096369862	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTCACTTGTCGGCACTT	NA	False	NA	NA	False	ATTAAA	-18	NA	3968212	3949211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_3949829_3957796_3957857_3962867_3962935_3967937
transcript_13583.known	chr13	-	1200	9	FSM	ENSMUSG00000021214.15	ENSMUST00000021635.9	1200	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.27760839478607	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTACTCTTGTGTATGA	NA	False	NA	NA	False	AATAAA	-22	NA	4200653	4182620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_4182836_4185201_4185285_4186600_4186767_4187132_4187243_4192125_4192249_4193216_4193295_4194288_4194406_4195204_4195373_4200513
transcript_13584.known	chr13	-	1103	8	FSM	ENSMUSG00000021214.15	ENSMUST00000110704.9	1103	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	2.44114392723358	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGTGTATGATTTGAAT	NA	False	NA	NA	False	AATAAA	-29	NA	4200627	4182613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_4182836_4185201_4185285_4186600_4186767_4187132_4187243_4192125_4192249_4194288_4194406_4195204_4195373_4200513
transcript_13585.known	chr13	+	1262	9	FSM	ENSMUSG00000021213.13	ENSMUST00000021634.4	1262	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.98956518577535	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAATATTTTCTTTGTTT	7357	False	NA	NA	False	AATAAA	-17	NA	4241148	4255595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_4241310_4244032_4244201_4244675_4244793_4246431_4246510_4246987_4247111_4247799_4247910_4248476_4248643_4253365_4253449_4255339
transcript_13588.known	chr13	-	3463	10	FSM	ENSMUSG00000045410.19	ENSMUST00000091848.7	3463	10	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	13.8082101181387	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGACTGTCTATACTGTGA	NA	False	NA	NA	False	NA	NA	NA	4659173	4640748	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_4643298_4643560_4643644_4645069_4645154_4645658_4645732_4647483_4647582_4648768_4648892_4651216_4651295_4652679_4652797_4657389_4657558_4659083
transcript_13593.known	chr13	+	4225	4	FSM	ENSMUSG00000000078.8	ENSMUST00000000080.8	4225	4	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	9.7410927974683	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGAGCCTGATTGTTTTT	NA	False	NA	8	True	CATAAA	-18	NA	5911480	5920393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_5911842_5914766_5915344_5916637_5916762_5917230
transcript_13596.nic	chr13	+	3468	27	NIC	ENSMUSG00000021193.11	novel	3906	27	NA	NA	-36	0	combination_of_known_junctions	TRUE	canonical	3	577	junction_1	112.248614598533	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGTTTTACTCATTATT	NA	False	NA	16	True	TATAAA	-17	NA	6598148	6630078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_6598266_6599618_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
transcript_13597.known	chr13	+	3906	27	FSM	ENSMUSG00000021193.11	ENSMUST00000222485.2	3906	27	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_1	134.848435629472	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGTTGTTACCTCAGG	NA	False	NA	NA	False	NA	NA	NA	6598186	6630551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_6598266_6599615_6599719_6602669_6602777_6603217_6603370_6605389_6605505_6605587_6605685_6606577_6606739_6607797_6607925_6608191_6608281_6609390_6609520_6610065_6610180_6610637_6610735_6611988_6612124_6613411_6613551_6615026_6615144_6617385_6617519_6618699_6618821_6618934_6619012_6619235_6619402_6620637_6620739_6623076_6623198_6624395_6624468_6625052_6625166_6627425_6627552_6628476_6628623_6629453_6629557_6629685
transcript_13602.known	chr13	-	2679	22	FSM	ENSMUSG00000021196.15	ENSMUST00000021614.14	2679	22	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_7	371.222751277127	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCCCATGGTACTTGG	NA	False	NA	-14	True	ATTAAA	-10	NA	6698761	6631217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6643136_6643290_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
transcript_13606.known	chr13	-	4145	22	FSM	ENSMUSG00000021196.15	ENSMUST00000138703.8	4145	22	0	0	0	0	multi-exon	FALSE	canonical	3	963	junction_15	143.890705562911	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTCAAAGATATGTGGCA	NA	False	NA	98	True	NA	NA	NA	6698813	6629803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6647894_6648048_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
transcript_1361.known	chr1	+	2071	4	FSM	ENSMUSG00000033227.8	ENSMUST00000006716.8	2071	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.49443825784929	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTTGTGAGGAACCCCTG	NA	False	NA	NA	False	ATTAAA	-32	NA	74811050	74824481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_74811382_74821260_74821482_74821718_74822054_74823297
transcript_13611.nnic	chr13	-	2614	21	NIC	ENSMUSG00000021196.15	novel	2679	22	NA	NA	-36	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_6	289.380247252642	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAACTCCCATGGTACTTGG	NA	False	NA	-14	True	ATTAAA	-10	NA	6698849	6631217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_6631629_6632438_6632542_6634636_6634737_6636515_6636628_6637087_6637150_6638524_6638690_6648774_6648863_6650631_6650703_6652748_6652896_6653114_6653185_6653434_6653500_6654991_6655118_6655671_6655765_6664739_6664836_6669210_6669320_6669555_6669601_6670921_6671088_6671942_6672133_6675171_6675250_6685960_6686035_6698606
transcript_13626.known	chr13	-	4526	14	FSM	ENSMUSG00000021147.18	ENSMUST00000021572.11	4526	14	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	12.9902102419544	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTATTATAAAGGTTTGT	NA	False	NA	-29	True	ATTAAA	-18	NA	8921080	8853030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_8855983_8869898_8870014_8870446_8870582_8885332_8885475_8886818_8887060_8892765_8892843_8894822_8894868_8897650_8897723_8899569_8899706_8903705_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920905
transcript_13628.known	chr13	-	1780	5	FSM	ENSMUSG00000021147.18	ENSMUST00000164183.9	1780	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	30.7774267930248	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTATACAGTGTGTG	NA	False	NA	NA	False	ATTAAA	-23	NA	8921015	8902704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920672
transcript_13629.known	chr13	-	3780	5	FSM	ENSMUSG00000021147.18	ENSMUST00000176922.8	3780	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	6.36396103067893	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCATCTGTTACAAGTGTG	NA	False	NA	NA	False	NA	NA	NA	8921059	8900515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_8903771_8904035_8904132_8906867_8906965_8911123_8911302_8920905
transcript_13631.known	chr13	+	3027	5	FSM	ENSMUSG00000058258.15	ENSMUST00000169314.9	3027	5	0	0	0	0	multi-exon	TRUE	canonical	3	487	junction_1	56.3576747213722	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAGGTAAAATACTTGT	NA	False	NA	75	True	TATAAA	-6	NA	8935536	8942487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_8936033_8936767_8936941_8937520_8937614_8937958_8938090_8940353
transcript_13633.known	chr13	-	8783	17	FSM	ENSMUSG00000021149.9	ENSMUST00000222098.2	8783	17	0	0	0	0	multi-exon	FALSE	canonical	3	688	junction_6	47.6523871385264	422	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGTTGAGCATTCTTG	NA	False	NA	NA	False	ATTAAA	-15	NA	9046119	9016366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_9023311_9024199_9024344_9024980_9025047_9027271_9027470_9028563_9028665_9029464_9029517_9029937_9030016_9035244_9035356_9035673_9035764_9037284_9037351_9037791_9037984_9039088_9039182_9040733_9040835_9041750_9041888_9041967_9042072_9042680_9042852_9045984
transcript_1364.nnic	chr1	-	1503	9	NNC	ENSMUSG00000026162.9	novel	1586	8	NA	NA	-40	-217	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_7	10.6183802907977	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGACTGTTGAGGTTACCT	NA	False	NA	-10	True	AATAAA	-15	NA	75101884	75006514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_75006928_75007327_75007435_75007953_75008072_75084467_75084527_75085659_75085799_75094701_75094915_75097219_75097475_75097876_75097971_75101779
transcript_13646.known	chr13	-	4117	15	FSM	ENSMUSG00000021156.18	ENSMUST00000110636.9	4117	15	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_14	35.3204716033877	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCAGTAAGCTGCTT	NA	False	NA	2	True	AATAAA	-22	NA	9815350	9734868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_9737021_9739098_9739285_9739487_9739761_9740481_9740551_9740938_9741147_9743465_9743585_9744304_9744383_9745164_9745221_9745774_9745863_9747679_9747773_9748663_9748742_9760181_9760344_9770808_9770969_9785367_9785503_9815090
transcript_1365.nnic	chr1	-	1357	8	NNC	ENSMUSG00000026162.9	novel	1586	8	NA	NA	-66	-217	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	8.89622712968015	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGACTGTTGAGGTTACCT	NA	False	NA	-10	True	AATAAA	-15	NA	75101910	75006514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_75006928_75007327_75007435_75007953_75008072_75084467_75084527_75085659_75085799_75094701_75094915_75097219_75097397_75101779
transcript_13654.known	chr13	-	8294	33	FSM	ENSMUSG00000021311.10	ENSMUST00000099856.6	8294	33	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_5	17.0824917221552	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTATGATGACTTTATA	5961	False	NA	0	True	AATAAA	-26	NA	12272981	12197597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_12201978_12202926_12203040_12204232_12204426_12205089_12205291_12208499_12208697_12210123_12210280_12212798_12212875_12213931_12214031_12215082_12215165_12219628_12219750_12220175_12220244_12227273_12227375_12227556_12227665_12230298_12230452_12231695_12231786_12236307_12236449_12237040_12237158_12240347_12240528_12242569_12242756_12245830_12245972_12247787_12247901_12250342_12250423_12252866_12252935_12254534_12254597_12256450_12256552_12258820_12258916_12259440_12259504_12262204_12262312_12262778_12262872_12264730_12264801_12265487_12265578_12268649_12268865_12272747
transcript_13656.known	chr13	+	6780	45	FSM	ENSMUSG00000050244.10	ENSMUST00000059270.10	6780	45	0	0	0	0	multi-exon	TRUE	canonical	3	181	junction_14	60.7064258923889	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACTGGTATTTGTCTTTA	1714	False	NA	5	True	AGTAAA	-19	NA	12410251	12453774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_12410352_12410620_12410795_12411302_12411520_12413783_12413926_12415930_12416033_12416330_12416472_12417594_12417807_12418025_12418160_12419768_12419872_12420903_12421015_12421405_12421524_12422397_12422506_12423534_12423631_12424089_12424179_12425276_12425489_12426100_12426223_12426925_12427118_12428105_12428290_12428392_12428530_12429253_12429447_12430297_12430468_12430831_12430991_12432340_12432584_12432978_12433111_12435922_12436027_12436158_12436303_12436921_12437041_12437121_12437244_12438514_12438644_12439500_12439732_12441034_12441162_12441642_12441804_12444647_12444695_12445021_12445146_12445791_12445933_12446560_12446854_12447509_12447661_12448492_12448652_12448797_12448933_12449067_12449173_12449254_12449424_12449927_12450083_12450550_12450710_12452714_12452824_12453469
transcript_13657.known	chr13	-	2736	10	FSM	ENSMUSG00000057554.14	ENSMUST00000099820.10	2736	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	22.4152725712726	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGGAATGAATACTCTC	NA	False	NA	-20	True	ATTAAA	-11	NA	12476384	12454304	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476121
transcript_13658.known	chr13	-	2792	10	FSM	ENSMUSG00000057554.14	ENSMUST00000099821.10	2792	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	18.5718491337539	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAATACTCTCTGGAATA	NA	False	NA	-13	True	ATTAAA	-18	NA	12476619	12454297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468165_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476307
transcript_1366.known	chr1	-	1586	8	FSM	ENSMUSG00000026162.9	ENSMUST00000152855.3	1586	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	8.89622712968015	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTGTGCTTTTTCTG	NA	False	NA	NA	False	NA	NA	NA	75101844	75006297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_75006928_75007327_75007435_75007953_75008072_75084467_75084527_75085659_75085799_75094701_75094915_75097219_75097475_75101779
transcript_13660.known	chr13	-	1148	10	FSM	ENSMUSG00000057554.14	ENSMUST00000144283.2	1148	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_5	11.9948548640605	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACCATGACTGCCAAAACC	NA	False	NA	-65	True	NA	NA	NA	12476376	12455725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_12455876_12462027_12462194_12463299_12463389_12466281_12466309_12467602_12467660_12468138_12468286_12469615_12469827_12471224_12471314_12474054_12474198_12476307
transcript_13664.known	chr13	+	4239	16	FSM	ENSMUSG00000057069.8	ENSMUST00000071973.8	4239	16	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_15	21.5185707910374	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGTTTCTTTGTTTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	12580763	12624417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_12581060_12589700_12589821_12594056_12594141_12595254_12595297_12596549_12596633_12598417_12598492_12605641_12605763_12605865_12605913_12608388_12608401_12610578_12610606_12614749_12614843_12614975_12615223_12616624_12616695_12617199_12617287_12619216_12619351_12621715
transcript_13670.known	chr13	-	2351	8	FSM	ENSMUSG00000021306.12	ENSMUST00000223093.2	2351	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	66.0247325335169	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGCAGACTCCTGACAGC	NA	False	NA	NA	False	AATAAA	-26	NA	13568149	13533019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_13534009_13535412_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
transcript_13675.nnic	chr13	-	1251	8	NNC	ENSMUSG00000021306.12	novel	3634	7	NA	NA	-3	-2295	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_4	69.6806124765134	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAATTTGTCATTCTTAA	NA	False	NA	-3	True	AATATA	-44	NA	13568202	13535495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_13535658_13535882_13536008_13538028_13538158_13539630_13539682_13539762_13539781_13542173_13542397_13548943_13548994_13567709
transcript_13676.known	chr13	-	2971	7	FSM	ENSMUSG00000021306.12	ENSMUST00000021738.10	2971	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	74.282680798869	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTCAACTGGTGCTGGA	NA	False	NA	NA	False	AATAAA	-19	NA	13568199	13532204	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_13534009_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
transcript_13678.known	chr13	-	3634	7	FSM	ENSMUSG00000021306.12	ENSMUST00000220628.2	3634	7	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_3	22.9249984853992	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATTTTGTAGAGTTTTC	NA	False	NA	NA	False	ATTAAA	-20	NA	13568209	13533200	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567709
transcript_13681.nic	chr13	-	1432	7	NIC	ENSMUSG00000021306.12	novel	3634	7	NA	NA	-46	-2295	combination_of_known_junctions	FALSE	canonical	2	6	junction_6	80.9349876272445	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAATTTGTCATTCTTAA	NA	False	NA	-3	True	AATATA	-44	NA	13568255	13535495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_13535658_13535882_13536008_13538028_13538158_13539630_13539781_13542173_13542397_13548943_13548994_13567662
transcript_13686.known	chr13	+	6091	20	FSM	ENSMUSG00000005397.9	ENSMUST00000005532.9	6091	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	184.261632008595	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGATGTGTTTTTGCTGT	NA	False	NA	12	True	ATTAAA	-27	NA	13612135	13686854	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_13612512_13638306_13638607_13639894_13640122_13642815_13643193_13647364_13647515_13650743_13650996_13652722_13652924_13656602_13656849_13658234_13658379_13661223_13661350_13663590_13663741_13664629_13664753_13674143_13674372_13675030_13675204_13676983_13677111_13680920_13681093_13682194_13682353_13683302_13683427_13684017_13684131_13684530
transcript_13694.known	chr13	-	1844	17	FSM	ENSMUSG00000039233.13	ENSMUST00000039894.13	1844	17	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	17.0705109399221	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGATTTCTCTGCCCTTTC	NA	False	NA	-5	True	AATAAA	-14	NA	14214223	14172536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178127_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
transcript_13702.nic	chr13	+	2490	13	NIC	ENSMUSG00000039242.11	novel	2439	13	NA	NA	48	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_12	55.6334107249312	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCCTTTTCCTATTTTTG	NA	False	NA	NA	False	AATAAA	-22	NA	14129101	14173659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477_14171610_14172963
transcript_13703.known	chr13	-	1855	13	FSM	ENSMUSG00000039233.13	ENSMUST00000159239.8	1855	13	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_7	16.4519502390041	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAAAAGGAGAAAACA	NA	False	NA	NA	False	NA	NA	NA	14214206	14177648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
transcript_13704.known	chr13	+	3892	12	FSM	ENSMUSG00000039242.11	ENSMUST00000099747.5	3892	12	0	0	0	0	multi-exon	TRUE	canonical	3	178	junction_5	19.409889274617	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCCTTTTCCTATTTTTG	NA	False	NA	NA	False	AATAAA	-22	NA	14129053	14173659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477
transcript_13715.known	chr13	-	933	5	FSM	ENSMUSG00000039233.13	ENSMUST00000160304.8	933	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	14.9059551857638	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACCCCTCAGTGCAGGTG	NA	False	NA	NA	False	NA	NA	NA	14214181	14188936	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
transcript_13719.known	chr13	-	909	4	FSM	ENSMUSG00000039233.13	ENSMUST00000160776.2	909	4	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	12.4988888395018	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGCCAGGGCTACACAGAG	NA	False	NA	NA	False	NA	NA	NA	14214202	14193859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_14194473_14202282_14202368_14203860_14203992_14214122
transcript_13721.known	chr13	+	2439	13	FSM	ENSMUSG00000039242.11	ENSMUST00000221974.2	2439	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_12	57.9839537190151	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAGCTGTAGTACCCTGAA	NA	False	NA	NA	False	AATAAA	-30	NA	14129209	14173688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_14129505_14140894_14141043_14145351_14145453_14150022_14150220_14155185_14155282_14161937_14162049_14165373_14165453_14165953_14166138_14168999_14169126_14169700_14169861_14170311_14170369_14171477_14171638_14172963
transcript_13722.known	chr13	+	435	3	FSM	ENSMUSG00000039242.11	ENSMUST00000221764.2	435	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	100.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTACTCCTGCCGACTGCT	NA	False	NA	NA	False	NA	NA	NA	14129258	14145415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_14129505_14140894_14141043_14145374
transcript_13723.known	chr13	-	1853	17	FSM	ENSMUSG00000039233.13	ENSMUST00000162326.2	1853	17	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	33.754571449657	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGATTTCTCTGCCCTTT	NA	False	NA	-6	True	AATAAA	-13	NA	14214223	14172537	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_14172767_14172947_14173040_14174642_14174703_14175694_14175764_14178117_14178282_14179727_14179869_14180372_14180438_14180527_14180593_14181026_14181123_14183199_14183277_14184213_14184317_14185126_14185227_14189319_14189409_14194286_14194473_14202282_14202368_14203860_14203992_14214122
transcript_13724.known	chr13	+	3020	15	FSM	ENSMUSG00000039219.19	ENSMUST00000110533.2	3020	15	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_14	10.1962878399095	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAGAAAAATATACAAA	1443	False	NA	NA	False	AAGAAA	-2	NA	14238383	14340267	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_14238618_14239409_14239465_14294725_14294837_14301035_14301102_14303759_14303851_14307020_14307101_14310752_14310845_14317564_14317704_14319871_14319952_14328000_14328078_14329565_14329721_14332358_14332432_14334762_14334858_14335882_14335981_14338693
transcript_13726.nic	chr13	+	1223	11	ISM	ENSMUSG00000039219.19	ENSMUST00000110533.2	3020	15	-84	10588	-69	0	5prime_fragment	FALSE	canonical	3	58	junction_10	8.57671265695663	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGATGAAAAAGAGAAAGAA	1359	False	NA	NA	False	NA	NA	NA	14238299	14329679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_+_14238618_14239409_14239465_14294725_14294837_14301035_14301102_14303759_14303851_14307020_14307101_14310752_14310845_14317564_14317704_14319871_14319952_14328000_14328078_14329565
transcript_13728.known	chr13	-	1340	7	FSM	ENSMUSG00000021302.11	ENSMUST00000222164.2	1340	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	113.396673476586	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACATTAAAAAAAAATTATCT	NA	False	NA	NA	False	NA	NA	NA	14237998	14226541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_14226716_14226862_14226979_14228494_14229041_14229734_14229806_14232380_14232474_14233903_14234036_14237790
transcript_13729.nic	chr13	-	1572	6	NIC	ENSMUSG00000021302.11	novel	1340	7	NA	NA	-2	291	intron_retention	FALSE	canonical	3	8	junction_5	120.179865202121	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGACTCAGTAGCTTCTTT	NA	False	NA	-4	True	AATAAA	-20	NA	14238000	14228262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_14229041_14229734_14229806_14232380_14232474_14233508_14233797_14233903_14234036_14237790
transcript_1373.known	chr1	-	2429	10	FSM	ENSMUSG00000033159.15	ENSMUST00000041213.12	2429	10	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_9	47.8820567438857	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCCTGGCCTTTTCCTTC	9308	False	NA	-16	True	AATAAA	-14	NA	75119341	75112414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75118701_75119205_75119286
transcript_13732.known	chr13	-	870	5	FSM	ENSMUSG00000021302.11	ENSMUST00000223174.2	870	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	114.48007468551	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTTTCCAGATTAGAGAT	NA	False	NA	NA	False	NA	NA	NA	14237958	14228637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14233903_14234039_14237790
transcript_13733.nic	chr13	-	1300	5	NIC	ENSMUSG00000021302.11	novel	870	5	NA	NA	-6	291	intron_retention	FALSE	canonical	3	19	junction_4	113.102829319164	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGACTCAGTAGCTTCTTT	NA	False	NA	-4	True	AATAAA	-20	NA	14238009	14228262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_14229041_14229734_14229806_14232380_14232474_14233903_14234043_14237790
transcript_13734.known	chr13	-	652	5	FSM	ENSMUSG00000021302.11	ENSMUST00000221338.2	652	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	126.178445068879	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCGATATTTACTGGAGG	NA	False	NA	NA	False	NA	NA	NA	14237995	14228802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14235547_14235593_14237790
transcript_13738.known	chr13	-	4244	4	FSM	ENSMUSG00000021302.11	ENSMUST00000170957.3	4244	4	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_3	35.1883819210577	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAATGTTAATTTGCTCA	NA	False	NA	-10	True	TATAAA	-1	NA	14238073	14225243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_14229041_14229734_14229806_14232380_14232474_14237790
transcript_1374.nic	chr1	-	2004	9	NIC	ENSMUSG00000033159.15	novel	2429	10	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_8	51.6876133614235	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCCTGGCCTTTTCCTTC	6765	False	NA	-16	True	AATAAA	-14	NA	75118476	75112414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75118343
transcript_13740.known	chr13	-	762	3	FSM	ENSMUSG00000021302.11	ENSMUST00000222687.2	762	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	137.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGAAGTTCTCATTCCCC	NA	False	NA	NA	False	AATACA	-34	NA	14237994	14228553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_14229041_14229734_14229806_14237790
transcript_13745.known	chr13	-	1174	3	FSM	ENSMUSG00000015672.5	ENSMUST00000221699.2	1174	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	520.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCAGTTGTTGAAAATGTA	NA	False	NA	NA	False	AATAAA	-24	NA	14787610	14784497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_14785326_14786007_14786190_14787446
transcript_13746.known	chr13	-	3013	3	FSM	ENSMUSG00000015672.5	ENSMUST00000220621.2	3013	3	0	0	0	0	multi-exon	FALSE	canonical	3	1082	junction_1	15.5	714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATTTTGAGTTTTTAAT	NA	False	NA	NA	False	AATAAA	-18	NA	14787750	14782768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_14785326_14786007_14786190_14787476
transcript_13747.known	chr13	-	658	3	FSM	ENSMUSG00000015672.5	ENSMUST00000015816.5	658	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	532	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAGTTGTTACTTTTAAA	NA	False	NA	-83	True	TTTAAA	-9	NA	14787600	14784957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_14785326_14786007_14786190_14787492
transcript_1375.known	chr1	-	3669	9	FSM	ENSMUSG00000033159.15	ENSMUST00000168720.8	3669	9	0	0	0	0	multi-exon	TRUE	canonical	3	100	junction_8	23.1405353222435	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTTTTCCAGAAGTTCA	9367	False	NA	NA	False	AATAAA	-13	NA	75119282	75111197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75118701
transcript_13754.known	chr13	+	2911	8	FSM	ENSMUSG00000015671.12	ENSMUST00000170836.4	2911	8	0	0	0	0	multi-exon	FALSE	canonical	3	4380	junction_5	234.832723791352	2735	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCTGAGTGGTGGTTGC	NA	False	NA	7	True	ATTAAA	-18	NA	14787824	14802221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_14787901_14790596_14790674_14791321_14791455_14793886_14794010_14795309_14795392_14798182_14798257_14799787_14799846_14799933
transcript_13758.known	chr13	+	2035	2	FSM	ENSMUSG00000039182.7	ENSMUST00000178289.3	2035	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGCCTGTTTTTCATTGT	NA	False	NA	10	True	ATTAAA	-17	NA	14804738	14812788	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_14804870_14810884
transcript_13759.known	chr13	+	2914	2	FSM	ENSMUSG00000039182.7	ENSMUST00000038690.6	2914	2	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGCCGCTAGCAAGTGAAA	NA	False	NA	NA	False	ATTAAA	-20	NA	14804832	14813681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_14804950_14810884
transcript_1376.nic	chr1	-	1940	9	NIC	ENSMUSG00000033159.15	novel	2429	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_8	50.7222830716442	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGCCTGGCCTTTTCCTTC	9294	False	NA	-16	True	AATAAA	-14	NA	75119355	75112414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059_75118148_75119286
transcript_13761.known	chr13	-	1351	3	FSM	ENSMUSG00000055137.8	ENSMUST00000220514.2	1351	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	1.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTGGTCTATTGTAATA	NA	False	NA	NA	False	NA	NA	NA	17869354	17857294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_17858438_17859293_17859371_17869223
transcript_13762.known	chr13	+	582	2	FSM	ENSMUSG00000012429.10	ENSMUST00000221480.2	582	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCATATTTGACATTTCC	NA	False	NA	-61	True	NA	NA	NA	17869776	17871841	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_17869944_17871426
transcript_13764.known	chr13	+	2672	2	FSM	ENSMUSG00000012429.10	ENSMUST00000049744.4	2672	2	0	0	0	0	multi-exon	FALSE	canonical	3	374	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTACTAAACAGTCTCTTA	NA	False	NA	NA	False	AATAAA	-18	NA	17869997	17873690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_17870406_17871426
transcript_13765.known	chr13	-	2688	5	FSM	ENSMUSG00000008859.9	ENSMUST00000009003.9	2688	5	0	0	0	0	multi-exon	FALSE	canonical	3	817	junction_1	45.9292934846597	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTGTTCATTGATGTTT	NA	False	NA	NA	False	AATAAA	-21	NA	18118824	18055155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_18057087_18063091_18063267_18067706_18067916_18071537_18071688_18118601
transcript_13766.known	chr13	-	1382	3	FSM	ENSMUSG00000075054.6	ENSMUST00000222796.2	1382	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	260	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTGTGCTAAACTGTAA	NA	False	NA	NA	False	ATTAAA	-38	NA	18167688	18163419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_18164368_18166212_18166335_18167376
transcript_13767.known	chr13	-	8744	3	FSM	ENSMUSG00000075054.6	ENSMUST00000099735.6	8744	3	0	0	0	0	multi-exon	FALSE	canonical	3	467	junction_2	27.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCGATGTGTTTTTTTTA	NA	False	NA	NA	False	AATAAA	-31	NA	18167934	18155914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_18164368_18166212_18166335_18167765
transcript_1377.known	chr1	-	2062	8	FSM	ENSMUSG00000033159.15	ENSMUST00000190679.7	2062	8	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_4	12.6426553656215	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGCCTTTTCCTTCTGT	6906	False	NA	-13	True	AATAAA	-17	NA	75118335	75112411	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_75113577_75113969_75114088_75114398_75114461_75115990_75116120_75116202_75116324_75116464_75116547_75117541_75117651_75118059
transcript_13771.known	chr13	+	3199	29	FSM	ENSMUSG00000041236.9	ENSMUST00000072961.6	3199	29	0	0	0	0	multi-exon	TRUE	canonical	3	419	junction_25	60.5186237990473	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTATTGTGTTGCAAGC	NA	False	NA	23	True	AATAAA	-22	NA	18901459	19050981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_18901507_18907357_18907397_18923611_18923717_18929431_18929510_18966816_18966892_18975756_18975820_18978496_18978563_18994601_18994722_18995736_18995884_18998396_18998464_19007949_19008048_19011773_19011904_19013392_19013509_19014906_19014964_19022821_19022884_19023817_19023900_19025327_19025421_19026322_19026451_19027638_19027784_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
transcript_1378.known	chr1	+	2561	9	FSM	ENSMUSG00000049339.17	ENSMUST00000097694.11	2561	9	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	8.45576726264388	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTCTGCCTGCTTGTC	NA	False	NA	15	True	AATAAA	-22	NA	75119429	75124557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_75119773_75120012_75120120_75120566_75120598_75120947_75121084_75121265_75121351_75121603_75121748_75121902_75121998_75122323_75122460_75123073
transcript_13781.nnic	chr13	+	1617	11	NIC	ENSMUSG00000041236.9	novel	3199	29	NA	NA	-2718	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	170.978244230077	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTATTGTGTTGCAAGC	NA	False	NA	23	True	AATAAA	-22	NA	19026314	19050981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_19026451_19029477_19029520_19030056_19030108_19033055_19033194_19036510_19036566_19037516_19037658_19038694_19038832_19046706_19046807_19046907_19046953_19048202_19048283_19050289
transcript_13784.known	chr13	+	3367	21	FSM	ENSMUSG00000021314.14	ENSMUST00000003345.10	3367	21	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_16	8.61669890387264	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTCTTTTTCAAGAGTG	NA	False	NA	19	True	AATAAA	-24	NA	19132374	19335091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692_19270789_19278922_19279031_19280176_19280263_19284062_19284139_19284741_19284825_19287041_19287181_19288400_19288530_19297272_19297390_19300406_19300431_19302321_19302346_19304765_19304799_19305444_19305490_19309195_19309319_19321705_19321913_19323341_19323603_19326134_19326237_19333905
transcript_13785.known	chr13	+	3224	21	FSM	ENSMUSG00000021314.14	ENSMUST00000200466.5	3224	21	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_16	10.4957134107215	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGTTACATGGGTTCTTTT	NA	False	NA	10	True	AATAAA	-15	NA	19132520	19335082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692_19270789_19278922_19279031_19280176_19280263_19284062_19284139_19284741_19284825_19287041_19287181_19288400_19288530_19297272_19297390_19300406_19300431_19302321_19302346_19304765_19304799_19305444_19305502_19309195_19309319_19321705_19321913_19323341_19323603_19326134_19326237_19333905
transcript_13786.nic	chr13	+	658	5	ISM	ENSMUSG00000021314.14	ENSMUST00000200273.2	1756	9	-44	14825	3	-14825	5prime_fragment	FALSE	canonical	3	55	junction_2	6.83282518435822	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCCTCTTAGTGAACGCT	NA	False	NA	NA	False	AATAAA	-21	NA	19132523	19270971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_+_19132672_19230122_19230204_19261500_19261556_19268374_19268470_19270692
transcript_1379.known	chr1	+	1206	10	FSM	ENSMUSG00000026197.13	ENSMUST00000160439.8	1206	10	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	30.0361921605614	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGTGCTGTTTCTTTTTC	2032	False	NA	16	True	AGTAAA	-22	NA	75145289	75148273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_75145352_75145474_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
transcript_13791.nnic	chr13	+	1200	4	NNC	ENSMUSG00000076749.3	novel	924	3	NA	NA	-16231	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	1.69967317119759	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTCTATTTTTGTCAGTC	NA	False	NA	NA	False	AATATA	-15	NA	19382041	19401194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_19382318_19398272_19398603_19400033_19400079_19400645
transcript_13796.known	chr13	-	1391	10	FSM	ENSMUSG00000003062.14	ENSMUST00000197565.3	1391	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	324.011659598163	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTGTGTTGTCTGTAT	NA	False	NA	0	True	AATAAA	-19	NA	19579904	19541845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19575142_19575268_19579873
transcript_1380.nic	chr1	+	1109	10	NIC	ENSMUSG00000026197.13	novel	1206	10	NA	NA	-9	-1	combination_of_known_junctions	FALSE	canonical	3	41	junction_9	47.0130005660373	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTATGAGTGCTGTTTCT	2023	False	NA	11	True	AGTAAA	-17	NA	75145280	75148268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_75145352_75145474_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147980
transcript_13802.known	chr13	-	1327	9	FSM	ENSMUSG00000003062.14	ENSMUST00000039694.13	1327	9	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_8	60.3857392105123	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGTGTGTTGTCTGTAT	NA	False	NA	0	True	AATAAA	-19	NA	19579965	19541845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
transcript_13805.nnic	chr13	-	1296	9	NNC	ENSMUSG00000003062.14	novel	1128	8	NA	NA	2	-1	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	340.955069437309	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTGTCATGCCCCTGCTT	NA	False	NA	-4	True	AATAAA	-17	NA	19579950	19549126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_19549516_19549601_19549725_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
transcript_13807.known	chr13	-	1074	8	FSM	ENSMUSG00000003062.14	ENSMUST00000199278.3	1074	8	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_7	61.3454587245254	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCATCCCTGCCTGCGGC	NA	False	NA	NA	False	NA	NA	NA	19579925	19542170	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_19542300_19543147_19543222_19551913_19552010_19554419_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
transcript_13808.known	chr13	-	1128	8	FSM	ENSMUSG00000003062.14	ENSMUST00000200323.3	1128	8	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	267.855352374968	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCATGCCCCTGCTTT	NA	False	NA	-3	True	AATAAA	-18	NA	19579904	19549125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_19549516_19551913_19552010_19554419_19554538_19554649_19554704_19556757_19556836_19557305_19557384_19560548_19560832_19579873
transcript_1381.known	chr1	+	1285	9	FSM	ENSMUSG00000026197.13	ENSMUST00000161106.8	1285	9	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	45.8732969711138	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGAGTGCTGTTTCTT	2032	False	NA	12	True	AGTAAA	-18	NA	75145289	75148269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_75145352_75145477_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147398_75147619_75147693_75147879
transcript_13811.known	chr13	-	2363	3	FSM	ENSMUSG00000002808.8	ENSMUST00000002885.8	2363	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	5.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGAGCCTATTAAGTCTC	NA	False	NA	NA	False	AATAAA	-34	NA	19803974	19775875	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_19777519_19778616_19778826_19803463
transcript_13812.known	chr13	+	1764	6	FSM	ENSMUSG00000021319.8	ENSMUST00000002883.7	1764	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.72046505340853	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATGTGTTTGTTGTCTGC	NA	False	NA	NA	False	GATAAA	-28	NA	19807344	19816999	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_19808048_19809197_19809279_19809363_19809430_19811275_19811475_19814235_19814300_19816348
transcript_13813.nic	chr13	+	2559	7	NIC	ENSMUSG00000041112.18	novel	3748	5	NA	NA	-24	-1828	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	14.4308696896618	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGGGAGCTGGTGTTTTG	NA	False	NA	5	True	AATAAA	-15	NA	20656871	20790695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_20657458_20748593_20748758_20756514_20756628_20766388_20766497_20773813_20773897_20784349_20784428_20789268
transcript_13818.nnic	chr13	+	1350	11	NNC	ENSMUSG00000021322.9	novel	2921	21	NA	NA	-74282	-549	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_6	9.14549069213894	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGGCATGTGTAGGTTAT	NA	False	NA	NA	False	AATGAA	-43	NA	21120520	21207873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_21120623_21125983_21126076_21163633_21163717_21178800_21178838_21179589_21179665_21184067_21184241_21186824_21186884_21187066_21187127_21189200_21189298_21197281_21197359_21207378
transcript_13819.nnic	chr13	+	1899	11	NNC	ENSMUSG00000021322.9	novel	2921	21	NA	NA	-74282	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_6	9.14549069213894	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGGGCATAATTGTG	NA	False	NA	23	True	AATAAA	-16	NA	21120520	21208422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_21120623_21125983_21126076_21163633_21163717_21178800_21178838_21179589_21179665_21184067_21184241_21186824_21186884_21187066_21187127_21189200_21189298_21197281_21197359_21207378
transcript_13827.known	chr13	+	4204	8	FSM	ENSMUSG00000021326.14	ENSMUST00000021761.13	4204	8	0	0	0	0	multi-exon	TRUE	canonical	3	719	junction_6	36.2209771220141	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTGCTGTTATTTTTTGG	929	False	NA	NA	False	AATAAA	-17	NA	21364100	21378893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_21365085_21366153_21366250_21367901_21368133_21372210_21372234_21374024_21374141_21374261_21374295_21375389_21375417_21376199
transcript_13828.known	chr13	+	1340	5	FSM	ENSMUSG00000004341.9	ENSMUST00000004453.9	1340	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	5.71729831301464	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGACTCTGAGTGATGT	925	False	NA	NA	False	NA	NA	NA	21496294	21503794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_21496515_21497817_21497972_21501154_21501273_21501738_21501839_21503046
transcript_13829.known	chr13	+	4405	4	FSM	ENSMUSG00000036721.15	ENSMUST00000225545.2	4405	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	12.0277457017791	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTCTCATAATTATGGT	NA	False	NA	8	True	NA	NA	NA	21546989	21556459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_21547043_21547749_21548222_21550784_21550927_21552721
transcript_13832.known	chr13	-	2600	6	FSM	ENSMUSG00000021327.20	ENSMUST00000116434.11	2600	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	29.6486087363303	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGTTCTTACTTGGG	NA	False	NA	2	True	AATAAA	-23	NA	21586925	21571172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580745_21586841
transcript_13833.nic	chr13	-	2841	6	NIC	ENSMUSG00000021327.20	novel	2561	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_5	37.8386046254351	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGTTCTTACTTGGG	NA	False	NA	2	True	AATAAA	-23	NA	21586883	21571172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580748_21586561
transcript_13834.known	chr13	-	2561	6	FSM	ENSMUSG00000021327.20	ENSMUST00000070785.16	2561	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	21.2452347598232	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGTTCTTACTTGGG	NA	False	NA	2	True	AATAAA	-23	NA	21586883	21571172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21580269_21580748_21586841
transcript_13839.known	chr13	-	2101	5	FSM	ENSMUSG00000021327.20	ENSMUST00000223831.2	2101	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	45.4477722226294	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGGTTCTTACTTGGG	NA	False	NA	2	True	AATAAA	-23	NA	21586901	21571172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_21572877_21578131_21578256_21578686_21578752_21578928_21579077_21586841
transcript_13840.known	chr13	-	4366	6	FSM	ENSMUSG00000022228.15	ENSMUST00000110485.3	4366	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	4.81663783151692	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCATTATTGAGGATAGT	NA	False	NA	NA	False	AATAAA	-14	NA	21637900	21626349	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_21630000_21631955_21632065_21632336_21632655_21633443_21633504_21633610_21633687_21637747
transcript_13841.known	chr13	-	2642	5	FSM	ENSMUSG00000055313.16	ENSMUST00000239246.2	2642	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	3.20156211871642	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCATTTCCTCACTTTCAG	NA	False	NA	NA	False	ATTAAA	-13	NA	21625214	21606021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_21607795_21612437_21612549_21617560_21617713_21618520_21618842_21624929
transcript_13843.known	chr13	-	2600	5	FSM	ENSMUSG00000055313.16	ENSMUST00000148071.8	2600	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	3.69966214673719	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCATTTCCTCACTTTCAG	NA	False	NA	NA	False	ATTAAA	-13	NA	21625228	21606021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_21607795_21612437_21612533_21617560_21617713_21618520_21618842_21624969
transcript_13844.known	chr13	+	2400	3	FSM	ENSMUSG00000054931.8	ENSMUST00000062609.6	2400	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAGTTAGAGTTTCTAT	NA	False	NA	NA	False	AATAAA	-28	NA	21663076	21669677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_21663680_21665443_21665601_21668037
transcript_13845.known	chr13	+	1924	1	FSM	ENSMUSG00000078139.4	ENSMUST00000104942.2	1924	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	53	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGTAGAATTTGAAGTAG	NA	False	NA	NA	False	TTTAAA	-27	NA	21679392	21681316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_21679400_21681300
transcript_13846.known	chr13	+	393	1	FSM	ENSMUSG00000071516.3	ENSMUST00000070124.5	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6637	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACCAAACATTACGAATCAC	3399	False	NA	-42	True	NA	NA	NA	21900591	21900984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_21900600_21901000
transcript_13847.known	chr13	+	411	1	FSM	ENSMUSG00000101355.2	ENSMUST00000188775.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTCGTCTTTCTGTGTTTT	4636	False	NA	NA	False	NA	NA	NA	21901828	21902239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_21901800_21902200
transcript_13848.known	chr13	+	524	1	FSM	ENSMUSG00000114279.2	ENSMUST00000224651.2	524	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTCTAGAGTACATTCC	9021	False	NA	NA	False	NA	NA	NA	21906213	21906737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_21906200_21906700
transcript_13849.known	chr13	+	774	1	FSM	ENSMUSG00000067455.6	ENSMUST00000087714.6	774	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATGGGGGAGGTGTGAA	8263	False	NA	NA	False	AATAAA	-18	NA	21919233	21920007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_21919200_21920000
transcript_1385.known	chr1	+	1316	9	FSM	ENSMUSG00000026197.13	ENSMUST00000027394.12	1316	9	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_8	17.9304210770411	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGAGTGCTGTTTCTT	2041	False	NA	12	True	AGTAAA	-18	NA	75145298	75148269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_75145551_75145828_75145924_75146143_75146276_75146408_75146561_75147010_75147104_75147182_75147244_75147329_75147398_75147619_75147693_75147879
transcript_13850.known	chr13	-	312	1	FSM	ENSMUSG00000064288.5	ENSMUST00000102983.2	312	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGTCTTTTATTTCTG	NA	False	NA	NA	False	NA	NA	NA	21934675	21934363	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_21934400_21934700
transcript_13851.known	chr13	-	743	1	FSM	ENSMUSG00000058773.3	ENSMUST00000080511.3	743	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGCTTGCGACAGCAACA	NA	False	NA	NA	False	AAAAAG	-7	NA	21964795	21964052	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_21964100_21964800
transcript_13852.known	chr13	-	411	1	FSM	ENSMUSG00000101972.2	ENSMUST00000189457.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCCCTACCTGTTAATAAC	NA	False	NA	NA	False	NA	NA	NA	21967540	21967129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_21967100_21967500
transcript_13853.known	chr13	+	469	1	FSM	ENSMUSG00000069308.8	ENSMUST00000102982.2	469	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCTACCTTACTCGGAC	NA	False	NA	NA	False	AAAACA	-21	NA	21971677	21972146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_21971700_21972100
transcript_13854.known	chr13	+	480	1	FSM	ENSMUSG00000094248.2	ENSMUST00000091745.6	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGTAAATCGATGTCATTT	NA	False	NA	NA	False	TTTAAA	-13	NA	21994634	21995114	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_21994600_21995100
transcript_13855.known	chr13	-	430	1	FSM	ENSMUSG00000069305.4	ENSMUST00000102979.2	430	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTACGGGCGGGCAAGT	NA	False	NA	NA	False	NA	NA	NA	22016366	22015936	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_22015900_22016400
transcript_13856.known	chr13	-	482	1	FSM	ENSMUSG00000094777.3	ENSMUST00000081342.7	482	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14185	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAGTGTCTTTTAAAGAAC	NA	False	NA	NA	False	AAAAAG	-19	NA	22017677	22017195	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_22017200_22017700
transcript_13857.known	chr13	+	2197	3	FSM	ENSMUSG00000069303.8	ENSMUST00000110467.2	2197	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGGAATCCTGATTTTT	NA	False	NA	NA	False	ATTAAA	-24	NA	22017927	22021700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_22018322_22019475_22019563_22019984
transcript_13858.known	chr13	+	2703	6	FSM	ENSMUSG00000006720.17	ENSMUST00000176511.8	2703	6	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	19.7949488506538	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTTAAGTTTCTTCTG	NA	False	NA	12	True	ATTAAA	-16	NA	22129263	22144655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_22129370_22129725_22129970_22131172_22131241_22133829_22133957_22134403_22134500_22142593
transcript_13859.known	chr13	+	3198	6	FSM	ENSMUSG00000006720.17	ENSMUST00000102978.8	3198	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	13.42236938845	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGAGAATCAAATTCAGTTG	NA	False	NA	NA	False	AATAAA	-12	NA	22129281	22144949	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_22129589_22129725_22129970_22131172_22131241_22133829_22133957_22134403_22134500_22142593
transcript_13860.known	chr13	-	1159	5	FSM	ENSMUSG00000006179.10	ENSMUST00000150547.3	1159	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	4.63680924774785	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGATTACTGTCCTTTGT	NA	False	NA	NA	False	TATAAA	-8	NA	22190582	22186720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_22186981_22187095_22187242_22187315_22187496_22189260_22189403_22190151
transcript_13865.known	chr13	-	405	1	FSM	ENSMUSG00000069302.6	ENSMUST00000091742.6	405	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5477	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTTTCAATATCTCCCAA	NA	False	NA	NA	False	NA	NA	NA	22219738	22219333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_22219300_22219700
transcript_13866.known	chr13	+	476	1	FSM	ENSMUSG00000062727.5	ENSMUST00000110455.4	476	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTCACCTTCGAGTACG	NA	False	NA	39	True	ACTAAA	-25	NA	22220039	22220515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_22220000_22220500
transcript_13867.known	chr13	-	727	1	FSM	ENSMUSG00000060639.6	ENSMUST00000102977.4	727	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATGGAAAACAGCTGGTT	NA	False	NA	NA	False	ATTAAA	-16	NA	22225532	22224805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_22224800_22225500
transcript_13868.known	chr13	-	485	1	FSM	ENSMUSG00000069301.6	ENSMUST00000091741.6	485	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	630	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCACTTAGCTTTCTGGA	NA	False	NA	19	True	NA	NA	NA	22227114	22226629	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_22226600_22227100
transcript_13869.known	chr13	+	463	1	FSM	ENSMUSG00000069300.4	ENSMUST00000110452.2	463	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCATGTCTACTGCTAAC	NA	False	NA	NA	False	TTTAAA	-8	NA	22227383	22227846	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_22227400_22227800
transcript_1387.known	chr1	-	2966	19	FSM	ENSMUSG00000026198.16	ENSMUST00000027396.15	2966	19	0	0	0	0	multi-exon	TRUE	canonical	3	123	junction_18	16.1765910736914	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACGGCTGTGGTTTGGTTGTG	NA	False	NA	-2	True	AATAAA	-15	NA	75157036	75148360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_75148633_75148757_75148827_75148909_75149005_75149198_75149312_75149434_75149610_75150188_75150294_75150505_75150564_75150782_75150869_75150969_75151034_75151121_75151199_75151345_75151472_75151616_75151683_75152151_75152262_75152733_75152856_75153946_75154131_75154308_75154411_75154565_75154747_75155574_75155713_75156213
transcript_13870.known	chr13	-	1261	5	FSM	ENSMUSG00000046351.12	ENSMUST00000145451.8	1261	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	37.5499667110372	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATAAGGCACCGAAGAACTC	9013	False	NA	NA	False	NA	NA	NA	23553371	23541201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_23541884_23546749_23546825_23546972_23547046_23552289_23552376_23553026
transcript_13871.known	chr13	-	815	5	FSM	ENSMUSG00000046351.12	ENSMUST00000125328.2	815	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	23.1124966197942	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACCAGAGAACACATGCAGG	9020	False	NA	NA	False	NA	NA	NA	23553364	23541362	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_23541884_23546749_23546825_23546972_23547046_23552289_23552376_23553304
transcript_13874.known	chr13	-	4844	4	FSM	ENSMUSG00000046351.12	ENSMUST00000050101.9	4844	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	41.5772373621272	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTCTCCACTATACTA	9006	False	NA	0	True	AATAAA	-22	NA	23553378	23537272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_23541884_23546972_23547046_23552289_23552376_23553304
transcript_13875.known	chr13	-	4456	3	FSM	ENSMUSG00000036376.4	ENSMUST00000041782.4	4456	3	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	5.5	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGGACTCTGTAAGCCT	NA	False	NA	NA	False	AATAAA	-19	NA	23608036	23602530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_23606506_23606652_23606853_23607755
transcript_13877.known	chr13	+	470	1	FSM	ENSMUSG00000060981.8	ENSMUST00000102972.6	470	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGATTGTGCAACGTTAG	4561	False	NA	NA	False	ATTAAA	-27	NA	23715219	23715689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_23715200_23715700
transcript_13878.known	chr13	+	530	1	FSM	ENSMUSG00000099517.3	ENSMUST00000080859.8	530	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAATCAGTTTCATTTGT	8933	False	NA	NA	False	AAAAAG	-29	NA	23719591	23720121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_23719600_23720100
transcript_13879.known	chr13	-	391	1	FSM	ENSMUSG00000069274.4	ENSMUST00000102971.2	391	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGACTTGTAATTGTTCTGT	9696	False	NA	NA	False	CATAAA	-17	NA	23735822	23735431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_23735400_23735800
transcript_13880.known	chr13	-	704	1	FSM	ENSMUSG00000069272.7	ENSMUST00000102969.6	704	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	116	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGATTGCCCACTAGGAC	8814	False	NA	NA	False	AATAAA	-23	NA	23755394	23754690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_23754700_23755400
transcript_13881.known	chr13	+	618	1	FSM	ENSMUSG00000058385.9	ENSMUST00000079251.8	618	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGTAACTACCTTTTGA	3223	False	NA	NA	False	NA	NA	NA	23755569	23756187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_23755600_23756200
transcript_13882.known	chr13	+	1156	2	FSM	ENSMUSG00000018102.6	ENSMUST00000018246.6	1156	2	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTGGGAGCTGAAGGGT	183	False	NA	NA	False	NA	NA	NA	23868181	23876891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_23868605_23876158
transcript_13883.known	chr13	-	3572	6	FSM	ENSMUSG00000006611.16	ENSMUST00000091706.14	3572	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.85472369909914	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATTGTATTTCTCTCTA	NA	False	NA	NA	False	AATAAA	-19	NA	23894837	23886016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_23888410_23889606_23889718_23889843_23890120_23890749_23891050_23892010_23892275_23894609
transcript_13884.known	chr13	+	1560	1	FSM	ENSMUSG00000036181.3	ENSMUST00000040914.3	1560	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGGACTCTTTCATACC	NA	False	NA	16	True	AATAAA	-21	NA	23922790	23924350	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_23922800_23924400
transcript_13885.known	chr13	-	630	1	FSM	ENSMUSG00000069310.5	ENSMUST00000091752.5	630	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGCTAGTAGTTCTTTA	4632	False	NA	67	True	NA	NA	NA	23929585	23928955	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_23929000_23929600
transcript_13886.known	chr13	+	508	1	FSM	ENSMUSG00000075031.5	ENSMUST00000099703.5	508	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTAATATATGACCTAACT	NA	False	NA	NA	False	NA	NA	NA	23930716	23931224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_23930700_23931200
transcript_13887.known	chr13	+	473	1	FSM	ENSMUSG00000061615.3	ENSMUST00000078369.3	473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCATAAAATGAGCTGCCAC	400	False	NA	NA	False	AAAACA	-30	NA	23935108	23935581	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_23935100_23935600
transcript_13888.known	chr13	+	397	1	FSM	ENSMUSG00000069266.6	ENSMUST00000102965.4	397	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGCTCCCTCACCCTTC	6287	False	NA	NA	False	AAAAAG	-7	NA	23940995	23941392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_23941000_23941400
transcript_13889.known	chr13	-	534	1	FSM	ENSMUSG00000069265.3	ENSMUST00000091701.3	534	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCTTAAACGAACCTATAT	NA	False	NA	NA	False	AGTAAA	-19	NA	23946369	23945835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_23945800_23946400
transcript_13890.known	chr13	+	741	1	FSM	ENSMUSG00000049539.4	ENSMUST00000055770.4	741	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CACCAACATAACTCAAAGAG	NA	False	NA	NA	False	TATAAA	-25	NA	23947648	23948389	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_23947600_23948400
transcript_13893.known	chr13	-	749	7	FSM	ENSMUSG00000006715.12	ENSMUST00000176890.8	749	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	603.044060487199	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAGGAATTTGATTCTGAA	NA	False	NA	NA	False	AATGAA	-29	NA	24945423	24936170	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945183
transcript_13894.known	chr13	-	723	7	FSM	ENSMUSG00000006715.12	ENSMUST00000175689.8	723	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	596.377513735125	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGCTAGGCCGTGTACAT	NA	False	NA	NA	False	NA	NA	NA	24945459	24936073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945342
transcript_13895.known	chr13	-	1127	7	FSM	ENSMUSG00000006715.12	ENSMUST00000006898.10	1127	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	603.044060487199	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCGTGGAGAATTAAGTGT	NA	False	NA	-8	True	AATAAA	-26	NA	24945844	24935827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945569
transcript_13896.known	chr13	-	963	7	FSM	ENSMUSG00000006715.12	ENSMUST00000110382.9	963	7	0	0	0	0	multi-exon	FALSE	canonical	3	1483	junction_6	81.6382603658086	1784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCGTGGAGAATTAAGTGT	NA	False	NA	-8	True	AATAAA	-26	NA	24945906	24935827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_24936214_24937330_24937442_24937640_24937724_24940582_24940719_24941578_24941657_24944142_24944201_24945795
transcript_13903.known	chr13	+	5849	5	FSM	ENSMUSG00000019132.12	ENSMUST00000019276.12	5849	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	16.0370664399696	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCTTACAGTGGTTCTTC	NA	False	NA	NA	False	NA	NA	NA	24985639	25000180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_24987493_24988764_24988942_24989844_24989968_24993868_24994004_24996619
transcript_13904.nnic	chr13	-	885	4	NNC	ENSMUSG00000006717.8	novel	721	3	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	121.633328765872	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAAGGAAGTATTTTCTTT	4777	False	NA	-3	True	AATAAA	-19	NA	25015540	25001930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_25002175_25004697_25004883_25006651_25006776_25015208
transcript_13906.known	chr13	-	721	3	FSM	ENSMUSG00000006717.8	ENSMUST00000006900.7	721	3	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_1	3	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAAGGAAGTATTTTCTTT	4817	False	NA	-3	True	AATAAA	-19	NA	25015500	25001930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_25002175_25004697_25004883_25015208
transcript_13909.known	chr13	+	1957	7	FSM	ENSMUSG00000035958.4	ENSMUST00000038039.3	1957	7	0	0	0	0	multi-exon	FALSE	canonical	3	768	junction_5	64.0791611125559	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGACTTTTTTCTTCATG	NA	False	NA	21	True	AATAAA	-21	NA	25015661	25026136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_25015913_25015992_25016079_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
transcript_1391.known	chr1	-	3764	16	FSM	ENSMUSG00000033124.17	ENSMUST00000040689.15	3764	16	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_15	10.0013332444563	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGTTGTGGCATCTTTT	NA	False	NA	-2	True	AATAAA	-13	NA	75168567	75157509	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_75158576_75159235_75159382_75159537_75159761_75161099_75161218_75161332_75161512_75161696_75161946_75162309_75162490_75162594_75162749_75162833_75163583_75164328_75164471_75164588_75164751_75166206_75166272_75166755_75166800_75166946_75167079_75167466_75167522_75168467
transcript_13913.known	chr13	+	1421	6	FSM	ENSMUSG00000035958.4	ENSMUST00000225138.2	1421	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	326.497534447046	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAAAGTAGATGACAGCTG	NA	False	NA	NA	False	AAAAAG	-15	NA	25015678	25025788	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_25015913_25015992_25016079_25020837_25020930_25022129_25022249_25024370_25024542_25025069
transcript_13915.nic	chr13	+	1880	6	NIC	ENSMUSG00000035958.4	novel	1957	7	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	322.122585361536	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACGACTTTTTTCTTCAT	NA	False	NA	20	True	AATAAA	-20	NA	25015651	25026135	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_25015913_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
transcript_13917.known	chr13	+	1771	6	FSM	ENSMUSG00000035958.4	ENSMUST00000225490.2	1771	6	0	0	0	0	multi-exon	FALSE	canonical	3	768	junction_4	61.475198251002	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTACGACTTTTTTCTTCAT	NA	False	NA	20	True	AATAAA	-20	NA	25015926	25026135	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_25016079_25019998_25020170_25020837_25020930_25022129_25022249_25024370_25024542_25025069
transcript_13918.known	chr13	+	6634	10	FSM	ENSMUSG00000035910.16	ENSMUST00000069614.7	6634	10	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_2	2.86744175568088	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCACTGAGGTTCAGTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	25240235	25394689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_25240547_25245217_25245273_25286315_25286393_25286503_25286636_25291573_25291721_25294049_25294105_25303229_25303390_25371658_25371760_25386147_25386451_25389396
transcript_13919.known	chr13	-	2222	4	FSM	ENSMUSG00000048978.15	ENSMUST00000057866.13	2222	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGTGTGGTGTTTATT	NA	False	NA	-1	True	AATAAA	-17	NA	25454065	25436022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_25437735_25446182_25446383_25452004_25452074_25453824
transcript_1392.known	chr1	+	2770	13	FSM	ENSMUSG00000026199.18	ENSMUST00000145459.9	2770	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	34.990077958695	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGTGTACTTACAGTC	44	False	NA	19	True	AATAAA	-15	NA	75168803	75176031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75171901_75172212_75172357_75172444_75172593_75172796_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
transcript_13920.known	chr13	+	627	1	FSM	ENSMUSG00000060198.8	ENSMUST00000180940.2	627	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATGCGTAGTGTAATA	NA	False	NA	NA	False	NA	NA	NA	26676536	26677163	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_26676500_26677200
transcript_13921.known	chr13	+	607	1	FSM	ENSMUSG00000113061.2	ENSMUST00000223428.2	607	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	322	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGAAAAAAATTTAGTAATA	NA	False	NA	-4	True	AATAAA	-15	NA	28441510	28442117	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_28441500_28442100
transcript_13928.known	chr13	+	682	4	FSM	ENSMUSG00000086363.8	ENSMUST00000140415.8	682	4	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_3	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTATCGAGTTATAGTT	NA	False	NA	NA	False	ATTAAA	-14	NA	29200275	29212780	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_29200375_29200692_29200863_29207158_29207196_29212404
transcript_13931.known	chr13	-	2629	16	FSM	ENSMUSG00000006191.18	ENSMUST00000006353.14	2629	16	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	17.6728291138937	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGTTTATTGGACTTT	NA	False	NA	NA	False	AATAAA	-23	NA	30039657	29509283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_29510212_29538612_29538778_29541482_29541567_29627990_29628054_29658511_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
transcript_13932.known	chr13	-	2019	12	FSM	ENSMUSG00000006191.18	ENSMUST00000131792.8	2019	12	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	15.5292313007885	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACTGA	NA	False	NA	NA	False	NA	NA	NA	30039626	29657850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_29658693_29701395_29701542_29736211_29736379_29809603_29809708_29875581_29875703_29893077_29893127_29901703_29901801_29961199_29961285_30030210_30030324_30033921_30034092_30038880_30038925_30039545
transcript_13934.known	chr13	-	694	6	FSM	ENSMUSG00000006191.18	ENSMUST00000129231.2	694	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	95.4136258612993	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCTCTAGAGAAGACCTG	NA	False	NA	NA	False	NA	NA	NA	30039648	30020977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_30021054_30022497_30022686_30030210_30030324_30033921_30034092_30038880_30038925_30039545
transcript_13936.known	chr13	-	5097	7	FSM	ENSMUSG00000016477.19	ENSMUST00000102948.11	5097	7	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_5	17.007351351695	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGTGGATGGATTTTCT	NA	False	NA	-3	True	AATAAA	-22	NA	30170046	30090557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_30094149_30095175_30095312_30097386_30097502_30100828_30100988_30102558_30102779_30104096_30104209_30169282
transcript_13938.known	chr13	+	2905	13	FSM	ENSMUSG00000038732.16	ENSMUST00000047311.16	2905	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	4.03026742978125	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTTTGTATCAAGACG	NA	False	NA	NA	False	AATAAA	-43	NA	30320471	30430700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_30320746_30378518_30378665_30379692_30379771_30386307_30386404_30403618_30403675_30406356_30406412_30408365_30408550_30410255_30410449_30415946_30416051_30419672_30419738_30421945_30422079_30425146_30425299_30429331
transcript_13939.known	chr13	-	1363	2	FSM	ENSMUSG00000038462.4	ENSMUST00000042834.4	1363	2	0	0	0	0	multi-exon	FALSE	canonical	3	2063	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTATTATTTTGTTGAA	NA	False	NA	-2	True	ATTAAA	-19	NA	30729345	30724290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_30725325_30729016
transcript_1394.known	chr1	+	2739	13	FSM	ENSMUSG00000026199.18	ENSMUST00000152233.9	2739	13	0	0	0	0	multi-exon	FALSE	canonical	2	42	junction_4	25.5582124222768	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGTGTACTTACAGTC	44	False	NA	19	True	AATAAA	-15	NA	75168803	75176031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75171901_75172243_75172357_75172444_75172593_75172796_75173026_75173157_75173314_75174287_75174769_75174908_75175021_75175120_75175289_75175423_75175510_75175707
transcript_13941.known	chr13	+	1161	8	FSM	ENSMUSG00000069255.14	ENSMUST00000091672.13	1161	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_7	7.4258236676383	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATGTGCAGTGTGTTCT	NA	False	NA	9	True	AATAAA	-22	NA	30843981	30895214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_30844130_30852787_30852822_30856375_30856459_30880218_30880269_30889608_30889684_30891912_30892085_30892659_30892733_30894688
transcript_13942.known	chr13	+	3015	7	FSM	ENSMUSG00000069255.14	ENSMUST00000095914.7	3015	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_6	5.61001089323561	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATGTGCAGTGTGTTCT	NA	False	NA	9	True	AATAAA	-22	NA	30844083	30895214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_30844130_30852787_30852822_30856375_30856459_30880218_30880269_30889608_30889684_30891912_30892085_30892659
transcript_13943.known	chr13	-	4256	28	FSM	ENSMUSG00000021357.15	ENSMUST00000021785.8	4256	28	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_19	19.2909994862811	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGTGTTTGTGTCTTCA	NA	False	NA	-2	True	AATAAA	-20	NA	31158037	30997901	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_30999375_31001980_31002041_31004560_31004623_31006614_31006738_31010021_31010078_31040636_31040779_31048813_31048931_31051954_31052022_31055101_31055164_31055824_31055885_31056271_31056353_31059241_31059304_31060713_31060836_31061225_31061384_31061530_31061597_31066231_31066357_31070171_31070298_31084767_31084887_31089635_31089739_31090485_31090568_31090714_31090861_31095152_31095234_31109705_31109831_31111290_31111405_31119477_31119605_31122098_31122276_31124592_31124754_31157978
transcript_13945.known	chr13	-	1787	7	FSM	ENSMUSG00000021357.15	ENSMUST00000222133.2	1787	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	58.7095014078263	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTATGATCTATAATTTG	NA	False	NA	NA	False	NA	NA	NA	31158076	31107638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_31108624_31109705_31109831_31111290_31111405_31119477_31119605_31122098_31122276_31124592_31124754_31157978
transcript_13946.known	chr13	-	1187	1	FSM	ENSMUSG00000076430.2	ENSMUST00000102943.2	1187	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTGAAACAATTATTGTAT	NA	False	NA	NA	False	AATAAA	-15	NA	31131742	31130555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_31130600_31131700
transcript_13947.known	chr13	-	1713	11	FSM	ENSMUSG00000038372.15	ENSMUST00000041859.9	1713	11	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_5	9.43186089804128	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGTTTGCTGTGTATGTT	NA	False	NA	-4	True	ATTAAA	-26	NA	32522723	32003561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_32003962_32004124_32004194_32101602_32101700_32124466_32124586_32284339_32284468_32310982_32311088_32311889_32312083_32409117_32409228_32411197_32411286_32418335_32418381_32522364
transcript_13948.known	chr13	+	2633	7	FSM	ENSMUSG00000021400.9	ENSMUST00000021832.7	2633	7	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_2	20.5081284697881	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCAGTTCTTCAGTGTT	NA	False	NA	14	True	AATAAA	-15	NA	32986020	33006592	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_32987028_32989320_32989513_32990741_32990984_33000235_33000466_33004201_33004358_33005021_33005102_33005866
transcript_13949.known	chr13	-	1918	7	FSM	ENSMUSG00000044734.17	ENSMUST00000076352.8	1918	7	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_6	10.85382677011	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGCAATCCAATAAATTG	4869	False	NA	NA	False	AATAAA	-25	NA	33035168	33026074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_33027206_33029291_33029460_33029653_33029797_33031372_33031491_33032601_33032740_33034221_33034398_33035124
transcript_13951.known	chr13	+	2193	7	FSM	ENSMUSG00000042842.12	ENSMUST00000110293.9	2193	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	2.08166599946613	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTCTTCTTCTTTTGAG	NA	False	NA	NA	False	AATAAA	-26	NA	33149191	33163050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_33149527_33152482_33152658_33155453_33155607_33156229_33156348_33158879_33159023_33161507_33161664_33161937
transcript_13952.known	chr13	+	3253	7	FSM	ENSMUSG00000021403.4	ENSMUST00000006392.3	3253	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	6.66874967458085	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAAGCCTGATCTTTATT	NA	False	NA	NA	False	NA	NA	NA	33211398	33225867	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_33211584_33213434_33213613_33216898_33217037_33217509_33217628_33219498_33219642_33221954_33222111_33223532
transcript_13956.known	chr13	-	1325	7	FSM	ENSMUSG00000052180.16	ENSMUST00000110273.9	1325	7	0	0	0	0	multi-exon	FALSE	canonical	3	772	junction_6	71.5830908028488	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAGAACCGAGTGTTTT	NA	False	NA	-7	True	AATAAA	-19	NA	34089153	34063798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089090
transcript_13957.known	chr13	-	1327	7	FSM	ENSMUSG00000052180.16	ENSMUST00000172184.2	1327	7	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	317.289431486984	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCTTCAGAACCGAGTGTTT	NA	False	NA	-8	True	AATAAA	-18	NA	34089691	34063799	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34083244_34083420_34089625
transcript_13961.nnic	chr13	-	1313	6	NIC	ENSMUSG00000052180.16	novel	1325	7	NA	NA	-163	0	combination_of_known_splicesites	FALSE	canonical	3	94	junction_5	331.741827329627	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCAGAACCGAGTGTTTT	NA	False	NA	-7	True	AATAAA	-19	NA	34089316	34063798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_34064316_34064604_34064761_34077786_34077930_34079251_34079370_34081326_34081480_34089090
transcript_13965.known	chr13	+	1063	8	FSM	ENSMUSG00000046949.17	ENSMUST00000021843.13	1063	8	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	70.4179939898249	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTTGCACTGTATTAG	NA	False	NA	13	True	AATACA	-25	NA	34148733	34169629	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_34148784_34150027_34150110_34152172_34152261_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
transcript_13967.known	chr13	-	1654	8	FSM	ENSMUSG00000060147.16	ENSMUST00000167163.8	1654	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	180.800939134278	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTCTGCCTCACTGG	8372	False	NA	2	True	AATAAA	-28	NA	34120066	34101900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119555_34119778_34119904
transcript_13970.known	chr13	-	1504	8	FSM	ENSMUSG00000060147.16	ENSMUST00000017188.14	1504	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_7	171.60728779539	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8459	False	NA	-7	True	AATAAA	-19	NA	34119979	34101909	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119609_34119778_34119904
transcript_13972.known	chr13	-	1504	8	FSM	ENSMUSG00000060147.16	ENSMUST00000076532.14	1504	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	178.591998815222	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTCTGCCTCACTGG	NA	False	NA	2	True	AATAAA	-28	NA	34186777	34101900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34180225_34180335_34186652
transcript_13973.known	chr13	+	3842	7	FSM	ENSMUSG00000046949.17	ENSMUST00000058978.9	3842	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	21.7995922489899	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTCCTCTCATTTATATC	NA	False	NA	14	True	ATTAAA	-18	NA	34148669	34172426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_34148784_34152172_34152261_34156294_34156460_34163514_34163646_34165407_34165522_34166430_34166533_34169298
transcript_13975.nic	chr13	-	1582	7	NIC	ENSMUSG00000060147.16	novel	1504	8	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_6	145.701464188479	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8566	False	NA	-7	True	AATAAA	-19	NA	34119872	34101909	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119551
transcript_13976.nic	chr13	-	1561	7	ISM	ENSMUSG00000060147.16	ENSMUST00000167163.8	1654	8	211	9	3	0	3prime_fragment	FALSE	canonical	0	0	junction_6	156.4210841145	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8583	False	NA	-7	True	AATAAA	-19	NA	34119855	34101909	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119555
transcript_13979.nic	chr13	-	1419	7	NIC	ENSMUSG00000060147.16	novel	1504	8	NA	NA	30	0	intron_retention	FALSE	canonical	3	40	junction_6	142.613697331872	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCAGAACTGTCTGTCTG	8531	False	NA	-7	True	AATAAA	-19	NA	34119907	34101909	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119749
transcript_13980.known	chr13	-	1547	7	FSM	ENSMUSG00000060147.16	ENSMUST00000043552.17	1547	7	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_6	98.4119742036845	429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTGTCTGCCTCACTGG	8257	False	NA	2	True	AATAAA	-28	NA	34120181	34101900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_34102426_34102723_34102880_34106908_34107052_34109294_34109413_34114007_34114161_34115454_34115630_34119904
transcript_13984.known	chr13	+	1253	7	FSM	ENSMUSG00000038286.12	ENSMUST00000040656.8	1253	7	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	28.0356915377524	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTCCTGTTTGCTA	NA	False	NA	15	True	AATAAA	-17	NA	34221579	34258057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416_34244549_34247892_34248017_34257658
transcript_13986.nic	chr13	+	1112	6	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_5	69.9828550432176	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTAGTGTTCCTGTTTG	NA	False	NA	12	True	AATAAA	-14	NA	34221593	34258054	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_34221753_34228406_34228511_34230768_34230936_34234263_34234418_34244416_34244549_34257658
transcript_13988.nic	chr13	+	1072	6	NIC	ENSMUSG00000038286.12	novel	1253	7	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_2	72.3972375163583	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTCCTGTTTGCTA	NA	False	NA	15	True	AATAAA	-17	NA	34221593	34258057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_34221753_34228406_34228511_34234263_34234418_34244416_34244549_34247892_34248017_34257658
transcript_1399.nic	chr1	+	1234	4	ISM	ENSMUSG00000026199.18	ENSMUST00000127625.3	1167	5	-66	0	-25	0	intron_retention	TRUE	canonical	3	96	junction_1	11.0855260988773	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACACTTGGTTTCTTGTT	10	True	NA	NA	False	NA	NA	NA	75168769	75172178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706
transcript_13991.known	chr13	-	1610	4	FSM	ENSMUSG00000058672.8	ENSMUST00000056427.10	1610	4	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_2	19.2006944318862	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCCTTTTCTCTTCAACA	NA	False	NA	NA	False	AATAAA	-22	NA	34261990	34258256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_34259512_34260160_34260272_34260531_34260641_34261855
transcript_13992.known	chr13	-	2182	4	FSM	ENSMUSG00000045136.7	ENSMUST00000075774.5	2182	4	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_3	10.4986771653491	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTACACACGCTCAGCAA	NA	False	NA	NA	False	NA	NA	NA	34314337	34310730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_34312515_34312854_34312966_34313228_34313338_34314159
transcript_13993.known	chr13	+	555	3	FSM	ENSMUSG00000071451.11	ENSMUST00000147632.3	555	3	0	0	0	0	multi-exon	FALSE	canonical	3	1035	junction_1	31.5	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCATTTTACTTTGTTTT	NA	False	NA	22	True	AATAAA	-22	NA	34346946	34362156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_34347233_34350043_34350120_34361963
transcript_13994.known	chr13	+	474	2	FSM	ENSMUSG00000071451.11	ENSMUST00000124996.8	474	2	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	0	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGCTTCATTTTACTTT	NA	False	NA	17	True	AATAAA	-17	NA	34346946	34362151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_34347233_34361963
transcript_13998.known	chr13	+	7844	15	FSM	ENSMUSG00000021413.10	ENSMUST00000077853.5	7844	15	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_7	21.2239035437088	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCGTCTACTGGCATTTTC	NA	False	NA	14	True	AATAAA	-19	NA	35059284	35090047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_35059678_35067213_35068411_35070652_35070827_35072106_35072263_35073494_35073577_35074477_35074689_35076072_35076147_35077743_35077835_35078417_35078566_35079301_35079440_35079949_35080104_35083091_35083207_35083813_35083966_35084346_35084434_35085375
transcript_14.known	ERCC-00043	+	1007	1	FSM	ERCC-00043A	DQ516787	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	38	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	TATAAA	-12	NA	0	1007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00043_+_0_1000
transcript_1400.known	chr1	+	1167	5	FSM	ENSMUSG00000026199.18	ENSMUST00000127625.3	1167	5	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_4	48.7307654362211	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACACTTGGTTTCTTGTT	76	False	NA	NA	False	NA	NA	NA	75168835	75172178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_75169322_75170821_75170929_75171484_75171588_75171706_75171937_75171937
transcript_14000.known	chr13	-	1347	9	FSM	ENSMUSG00000021416.12	ENSMUST00000021853.12	1347	9	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_1	1.69096865730859	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATACTGTAAAATTAATACT	NA	False	NA	NA	False	NA	NA	NA	35147793	35130596	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_35131074_35132054_35132199_35132727_35132818_35136963_35137085_35138064_35138165_35140843_35140914_35143856_35144046_35144383_35144483_35147736
transcript_14006.nic	chr13	-	1620	10	NIC	ENSMUSG00000021417.16	novel	1746	10	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_9	52.8942574306115	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAGAATTCATGTTGG	NA	False	NA	NA	False	AATAAA	-17	NA	35178147	35161730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177204_35177812
transcript_14007.known	chr13	-	1395	10	FSM	ENSMUSG00000021417.16	ENSMUST00000110251.9	1395	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	51.0630208542878	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCAAGCCTTAAGAAT	NA	False	NA	NA	False	AATAAA	-8	NA	35178115	35161739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177204_35177996
transcript_14008.known	chr13	-	1746	10	FSM	ENSMUSG00000021417.16	ENSMUST00000021854.14	1746	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_9	45.5959170795038	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTTAAGAATTCATGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	35178264	35161731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177214_35177812
transcript_14009.known	chr13	-	1426	10	FSM	ENSMUSG00000021417.16	ENSMUST00000171229.8	1426	10	0	0	0	0	multi-exon	TRUE	canonical	3	71	junction_9	38.39206450927	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAGAATTCATGTTGG	NA	False	NA	NA	False	AATAAA	-17	NA	35178127	35161730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177214_35177996
transcript_1401.known	chr1	+	2876	8	FSM	ENSMUSG00000026201.13	ENSMUST00000027401.11	2876	8	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_4	30.7265756142723	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCAAGTAGCGGTCTACT	NA	False	NA	NA	False	AATAAA	-13	NA	75187481	75192250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189776_75189873_75190219_75190342_75190457
transcript_14010.nic	chr13	-	1730	10	NIC	ENSMUSG00000021417.16	novel	1746	10	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_9	56.5674512702303	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAGAATTCATGTTGG	NA	False	NA	NA	False	AATAAA	-17	NA	35178149	35161730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177312_35177812
transcript_14011.nic	chr13	-	1524	10	NIC	ENSMUSG00000021417.16	novel	1426	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_9	51.9781530555072	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAGAATTCATGTTGG	NA	False	NA	NA	False	AATAAA	-17	NA	35178127	35161730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_35162050_35162632_35162777_35164244_35164335_35170049_35170171_35171451_35171552_35172265_35172336_35174163_35174353_35174700_35174800_35177050_35177312_35177996
transcript_14016.nnic	chr13	+	3198	7	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	-2868	0	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_1	63.2334739060114	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGGAGTGTTTCTCTGCG	NA	False	NA	18	True	AATAAA	-19	NA	35922427	36058046	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_35922622_35999891_36000559_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
transcript_14019.nnic	chr13	+	2460	6	NNC	ENSMUSG00000059288.15	novel	3470	10	NA	NA	90697	0	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	80.650852444348	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGGAGTGTTTCTCTGCG	NA	False	NA	18	True	AATAAA	-19	NA	36037491	36058046	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_36037615_36040645_36040903_36042058_36042232_36047181_36047393_36055560_36055705_36056494
transcript_14022.nnic	chr13	-	1053	8	NNC	ENSMUSG00000021418.16	novel	4380	8	NA	NA	297	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_7	192.402639041683	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGTCACACCTTGCTTGT	NA	False	NA	-14	True	CATAAA	-15	NA	36090014	36080694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36087670_36087740_36088401_36088547_36089945
transcript_14023.known	chr13	-	4380	8	FSM	ENSMUSG00000021418.16	ENSMUST00000171686.9	4380	8	0	0	0	0	multi-exon	FALSE	canonical	3	464	junction_5	45.6195446836425	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCATTTTGTGTATTGTC	NA	False	NA	NA	False	NA	NA	NA	36090342	36077454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36087670_36087740_36088401_36088547_36090186
transcript_14024.known	chr13	-	1053	7	FSM	ENSMUSG00000021418.16	ENSMUST00000174230.2	1053	7	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_5	206.52017657685	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAGAGTCACACCTTGCT	NA	False	NA	-17	True	CATAAA	-12	NA	36090327	36080697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_36080909_36082547_36082683_36082797_36082997_36085288_36085415_36085995_36086092_36088401_36088547_36090186
transcript_14028.known	chr13	-	2086	3	FSM	ENSMUSG00000046573.8	ENSMUST00000053265.8	2086	3	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_1	9.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCACCCAGCTAAACTGGAC	NA	False	NA	NA	False	NA	NA	NA	36301509	36162377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_36163891_36276788_36276910_36301057
transcript_14034.nic	chr13	+	1980	7	NIC	ENSMUSG00000021420.14	novel	2125	7	NA	NA	-67	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	85.194711625129	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACATAGCATTTGTCTTT	NA	False	NA	9	True	AATAAA	-20	NA	36301327	36721567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_36301777_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
transcript_14036.known	chr13	+	2125	7	FSM	ENSMUSG00000021420.14	ENSMUST00000021857.13	2125	7	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	25.2300526268883	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACATAGCATTTGTCTTT	NA	False	NA	9	True	AATAAA	-20	NA	36301394	36721567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_36301989_36388491_36389125_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
transcript_14039.known	chr13	+	962	6	FSM	ENSMUSG00000021420.14	ENSMUST00000099582.4	962	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	98.7886633172046	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGAACTGGAGTGTCTG	NA	False	NA	-75	True	NA	NA	NA	36301840	36721483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_36301989_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
transcript_14040.nnic	chr13	+	1145	6	NNC	ENSMUSG00000021420.14	novel	726	5	NA	NA	-11877	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	93.2660710011953	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACATAGCATTTGTCTTT	NA	False	NA	9	True	AATAAA	-20	NA	36404227	36721567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_36404475_36416104_36416265_36430345_36430478_36525919_36526081_36594061_36594214_36721274
transcript_14042.known	chr13	-	354	2	FSM	ENSMUSG00000099847.2	ENSMUST00000187093.2	354	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTGCAGCTGTGGCTAG	NA	False	NA	NA	False	NA	NA	NA	37637184	37636187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_37636445_37637087
transcript_14044.known	chr13	-	9333	8	FSM	ENSMUSG00000021427.11	ENSMUST00000021864.8	9333	8	0	0	0	0	multi-exon	FALSE	canonical	3	888	junction_3	64.8026832399866	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGGCCTCCAAAGATGAG	5846	False	NA	NA	False	AATAAA	-18	NA	38178193	38155376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_38163783_38167368_38167463_38169239_38169319_38169950_38170028_38171492_38171756_38173479_38173568_38175972_38176086_38177980
transcript_14048.known	chr13	+	2738	17	FSM	ENSMUSG00000021428.10	ENSMUST00000021866.10	2738	17	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	18.4889113727661	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTTGCATTCTTGCTA	4488	False	NA	18	True	AATAAA	-19	NA	38220970	38245409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884_38227955_38229248_38229292_38231220_38231314_38232855_38232969_38233051_38233133_38234199_38234287_38234783_38234922_38236244_38236349_38236853_38236961_38240137_38240204_38241112_38241233_38242663_38242718_38243915_38244069_38244730
transcript_14050.nic	chr13	+	1846	4	ISM	ENSMUSG00000021428.10	ENSMUST00000226006.2	2307	5	-66	2456	-29	75	5prime_fragment	FALSE	canonical	3	187	junction_3	20.3960780543711	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTGTCTCTGAA	4709	False	NA	NA	False	NA	NA	NA	38221191	38229121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_+_38221508_38224048_38224251_38227026_38227118_38227884
transcript_14054.known	chr13	+	1785	9	FSM	ENSMUSG00000021431.16	ENSMUST00000091641.13	1785	9	0	0	0	0	multi-exon	FALSE	canonical	1	67	junction_6	66.7082032062025	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGAAGTGCTGTGTG	NA	False	NA	25	True	ATTAAA	-26	NA	38388920	38411641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_38389105_38393852_38393967_38394182_38394244_38395042_38395118_38400300_38400490_38401349_38401472_38404663_38404753_38405210_38405370_38410849
transcript_14057.known	chr13	-	5634	5	FSM	ENSMUSG00000038982.11	ENSMUST00000035899.8	5634	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8.98262211161084	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGAATGGGGATGTGTG	NA	False	NA	NA	False	AATAAA	-26	NA	38819085	38782816	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_38788005_38796618_38796678_38803065_38803196_38814968_38815052_38818911
transcript_14059.nnic	chr13	-	1726	4	NIC	ENSMUSG00000038982.11	novel	5634	5	NA	NA	-16	-3865	combination_of_known_splicesites	FALSE	canonical	2	3	junction_1	34.6538437823121	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAATAAGTATTTGAGATT	NA	False	NA	-28	True	ATTAAA	-15	NA	38819101	38786681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_38788005_38803065_38803196_38814968_38815052_38818911
transcript_14060.known	chr13	-	1020	5	FSM	ENSMUSG00000038982.11	ENSMUST00000224115.2	1020	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	32.8357655613509	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAGCTGTCTAGTGATCT	NA	False	NA	NA	False	ACTAAA	-10	NA	38819068	38776817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_38777409_38796618_38796678_38803065_38803196_38814968_38815052_38818911
transcript_14061.known	chr13	-	612	5	FSM	ENSMUSG00000038982.11	ENSMUST00000224902.2	612	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	32.8357655613509	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTCCTTATTTTTTTT	NA	False	NA	NA	False	AATATA	-19	NA	38819037	38795809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_38796024_38796618_38796678_38803065_38803196_38814968_38815052_38818911
transcript_14063.known	chr13	-	2553	4	FSM	ENSMUSG00000001707.9	ENSMUST00000001757.9	2553	4	0	0	0	0	multi-exon	FALSE	canonical	3	1400	junction_3	42.6640624205223	2025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGGGTTGGTGACAACCTATC	NA	False	NA	NA	False	AATAAA	-21	NA	38843034	38828182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_38830287_38838971_38839068_38840015_38840217_38842882
transcript_14066.known	chr13	-	533	2	FSM	ENSMUSG00000001707.9	ENSMUST00000224487.2	533	2	0	0	0	0	multi-exon	FALSE	canonical	3	1400	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATTAACAAGAGCAT	NA	False	NA	NA	False	AATAAA	-20	NA	38842986	38839787	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_38840217_38842882
transcript_14070.known	chr13	-	2216	10	FSM	ENSMUSG00000021432.16	ENSMUST00000225432.2	2216	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	14.9004929904357	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATCAAGGTGGGAAGAAC	NA	False	NA	NA	False	AATAAA	-15	NA	39144800	39116115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39128475_39128631_39138084_39138207_39139624_39139913_39144407
transcript_14072.known	chr13	-	1778	10	FSM	ENSMUSG00000021432.16	ENSMUST00000167513.3	1778	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_9	18.3127830951868	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTTTTAATAGAATTTG	NA	False	NA	NA	False	AATAAA	-24	NA	39144505	39116280	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39128475_39128631_39138084_39138207_39139624_39139913_39144385
transcript_14079.known	chr13	-	802	9	FSM	ENSMUSG00000021432.16	ENSMUST00000224645.2	802	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	12.4473892845046	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCTGGCTTGTTAGTTGT	NA	False	NA	NA	False	NA	NA	NA	39144483	39116885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_39116893_39118713_39118784_39121217_39121330_39121722_39121816_39123850_39123949_39127034_39127143_39138084_39138207_39139796_39139913_39144407
transcript_14091.known	chr13	+	4352	3	FSM	ENSMUSG00000021360.17	ENSMUST00000110191.10	4352	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	71.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCAGGAATAGTGGATATT	NA	False	NA	15	True	AATAAA	-20	NA	41013229	41114363	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_41014750_41107051_41107148_41111627
transcript_14092.known	chr13	+	3929	3	FSM	ENSMUSG00000021360.17	ENSMUST00000069958.15	3929	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	65	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAATAGTGGATATTTATT	NA	False	NA	19	True	AATAAA	-24	NA	41040668	41114367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_41041762_41107051_41107148_41111627
transcript_14093.known	chr13	+	4038	3	FSM	ENSMUSG00000021360.17	ENSMUST00000067778.8	4038	3	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	29	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATAGTGGATATTTATTT	NA	False	NA	20	True	AATAAA	-25	NA	41071076	41114368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_41072278_41107051_41107148_41111627
transcript_14097.known	chr13	+	1366	2	FSM	ENSMUSG00000021360.17	ENSMUST00000225759.2	1366	2	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAATAAAAAGC	NA	False	NA	NA	False	AAAACA	-18	NA	41071125	41107265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_41072278_41107051
transcript_14098.known	chr13	+	1722	10	FSM	ENSMUSG00000038683.17	ENSMUST00000046951.10	1722	10	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_5	43.1108247413169	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAGCTTAATTACATTTAT	NA	False	NA	NA	False	AGTAAA	-28	NA	41154498	41166491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162415_41162694_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040
transcript_14102.known	chr13	+	1757	9	FSM	ENSMUSG00000038683.17	ENSMUST00000174472.3	1757	9	0	0	0	0	multi-exon	FALSE	canonical	3	613	junction_2	42.5147033389626	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGAGCTTAATTACATTT	NA	False	NA	NA	False	AGTAAA	-26	NA	41154741	41166489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_41154890_41158212_41158376_41161491_41161613_41161686_41161762_41162361_41162841_41162923_41163022_41164658_41164759_41165809_41165934_41166040
transcript_14109.known	chr13	+	914	6	FSM	ENSMUSG00000021361.8	ENSMUST00000021790.7	914	6	0	0	0	0	multi-exon	FALSE	canonical	3	613	junction_2	43.7154434954056	742	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTGTCGTCTTTGTTAG	NA	False	NA	15	True	AATAAA	-22	NA	41169767	41176062	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_41169875_41170590_41170650_41171181_41171259_41171831_41171934_41174594_41174683_41175581
transcript_14116.nnic	chr13	+	896	5	NIC	ENSMUSG00000021361.8	novel	914	6	NA	NA	-41	0	combination_of_known_splicesites	FALSE	canonical	3	108	junction_1	251.069089097005	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTGTCGTCTTTGTTAG	NA	False	NA	15	True	AATAAA	-22	NA	41169726	41176062	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_41169875_41171181_41171259_41171831_41171934_41174594_41174683_41175581
transcript_14131.nnic	chr13	+	1070	11	Fusion	ENSMUSG00000038651.16_ENSMUSG00000114388.2	novel	2641	29	NA	NA	-55	-653	multi-exon	FALSE	canonical	2	6	junction_1	9.73087868591526	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCGGTCCAGTAATAGAAA	NA	False	NA	1	True	CATAAA	-21	NA	41306808	41331853	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr13_+_41306957_41310909_41310994_41316547_41316622_41316769_41316840_41324946_41325022_41326119_41326224_41327290_41327389_41327673_41327774_41327873_41327933_41330358_41330421_41331657
transcript_14137.known	chr13	-	3840	8	FSM	ENSMUSG00000021364.17	ENSMUST00000021793.15	3840	8	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_4	7.79848232226067	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTAGATTCTTAATTCA	7559	False	NA	NA	False	AATAAA	-18	NA	41373881	41335856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_41338884_41340328_41340464_41340904_41341030_41343421_41343594_41345363_41345442_41348122_41348311_41350610_41350675_41373830
transcript_14138.known	chr13	+	4483	2	FSM	ENSMUSG00000091264.4	ENSMUST00000165561.4	4483	2	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTGCCTCATTGGTTA	NA	False	NA	NA	False	AATAAA	-19	NA	41403319	41430053	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_41403791_41426041
transcript_14140.known	chr13	-	1046	8	FSM	ENSMUSG00000058022.15	ENSMUST00000179758.8	1046	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	8.48046975980333	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTCTTGGGATCTCCT	NA	False	NA	-35	True	AATAAA	-13	NA	42001092	41918065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_41918090_41918120_41918269_41920811_41920964_41930983_41931100_41967690_41967793_41969613_41969749_41981618_41981862_42000966
transcript_14141.known	chr13	+	2139	5	FSM	ENSMUSG00000021367.9	ENSMUST00000021796.9	2139	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	2.44948974278318	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACTTGTGAATTATTTCT	NA	False	NA	NA	False	AATAAA	-18	NA	42454951	42461466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_42455435_42457032_42457202_42458421_42458581_42458730_42458845_42460252
transcript_14143.known	chr13	-	1246	8	FSM	ENSMUSG00000021368.16	ENSMUST00000179852.9	1246	8	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_7	48.9393627307283	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCGTGGCCATGATG	NA	False	NA	-17	True	AGTAAA	-16	NA	43324960	43305215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_43305457_43306545_43306676_43308164_43308311_43312738_43312877_43318754_43318943_43322249_43322331_43323277_43323424_43324784
transcript_14144.known	chr13	-	1239	8	FSM	ENSMUSG00000021368.16	ENSMUST00000021797.9	1239	8	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_7	94.4833426632246	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGCCTGGCGTGGCCAT	NA	False	NA	-21	True	AGTAAA	-12	NA	43324977	43305219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_43305457_43306545_43306676_43308164_43308311_43312738_43312877_43318754_43318943_43322249_43322331_43323277_43323424_43324804
transcript_14148.known	chr13	+	1398	9	FSM	ENSMUSG00000054021.7	ENSMUST00000223194.2	1398	9	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	63.0811729044411	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTATTTTTTTGTACTTT	NA	False	NA	10	True	ATTAAA	-22	NA	43518981	43548679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_43519021_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
transcript_1415.known	chr1	-	2840	4	FSM	ENSMUSG00000026202.14	ENSMUST00000186213.7	2840	4	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	27.6526068692749	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTATTCTCCTTTTTATGT	NA	False	NA	NA	False	AATATA	-16	NA	75195938	75190871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_75193238_75193470_75193620_75193855_75194079_75195836
transcript_14150.nic	chr13	+	1501	9	NIC	ENSMUSG00000054021.7	novel	1579	9	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	172	junction_8	20.7710736361893	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTATTTTTTTGTACTTT	NA	False	NA	10	True	ATTAAA	-22	NA	43519074	43548679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_43519217_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
transcript_14151.known	chr13	+	803	6	FSM	ENSMUSG00000054021.7	ENSMUST00000221955.2	803	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	77.615462377029	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAACAAAAAAACAAAAC	NA	False	NA	NA	False	NA	NA	NA	43519005	43534165	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_43519021_43524194_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975
transcript_14158.known	chr13	+	1367	8	FSM	ENSMUSG00000054021.7	ENSMUST00000066804.5	1367	8	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_7	21.27372625027	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTATTTTTTTGTACTT	NA	False	NA	9	True	ATTAAA	-21	NA	43524185	43548678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_43524345_43525307_43525442_43530170_43530397_43533148_43533237_43533975_43534030_43536584_43536709_43538973_43539090_43548212
transcript_14161.known	chr13	+	1800	8	FSM	ENSMUSG00000063200.5	ENSMUST00000071926.5	1800	8	0	0	0	0	multi-exon	FALSE	canonical	3	1274	junction_1	87.1250567299906	1137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGACATGTAATACTGT	NA	False	NA	NA	False	AATAAA	-14	NA	43551865	43556337	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_43552135_43552210_43552272_43552986_43553046_43554068_43554098_43554328_43554411_43554772_43554895_43554975_43555054_43555237
transcript_14171.known	chr13	-	4339	9	FSM	ENSMUSG00000021371.6	ENSMUST00000021800.6	4339	9	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	32.5720355519885	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTGTACAGTGTTTTA	NA	False	NA	NA	False	AATAAA	-29	NA	43713637	43691868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_43695206_43697931_43698047_43699163_43699218_43702126_43702199_43703007_43703050_43704472_43704575_43705072_43705177_43708371_43708492_43713244
transcript_14175.known	chr13	-	1298	4	FSM	ENSMUSG00000113010.2	ENSMUST00000222236.2	1298	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.4142135623731	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTAACCTTTCTTTTTGT	NA	False	NA	NA	False	ATTAAA	-17	NA	44658024	44625901	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_44626251_44638157_44638776_44641201_44641372_44657863
transcript_14176.known	chr13	+	5019	19	FSM	ENSMUSG00000038518.16	ENSMUST00000044608.14	5019	19	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	177.530035712966	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCCCATCCCTTTTGTAC	9933	False	NA	NA	False	NA	NA	NA	44884298	45074471	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_44884411_44885188_44885393_44976855_44976992_45001755_45001898_45027758_45027929_45038179_45038357_45049729_45049966_45055701_45056735_45059708_45060212_45060969_45061063_45063818_45063938_45064012_45064084_45064641_45064757_45066656_45066763_45067126_45067310_45067721_45067853_45068239_45068424_45069892_45070001_45073275
transcript_14177.known	chr13	-	1362	10	FSM	ENSMUSG00000057531.15	ENSMUST00000072329.15	1362	10	0	0	0	0	multi-exon	FALSE	canonical	3	444	junction_2	46.8187996428785	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTGCAGCTGGTGAGTA	NA	False	NA	NA	False	AATAAA	-15	NA	45155623	45075554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_45075931_45076624_45076769_45084471_45084628_45106647_45106671_45123521_45123655_45136216_45136350_45139510_45139572_45145494_45145546_45147160_45147215_45155392
transcript_14179.known	chr13	+	3065	7	FSM	ENSMUSG00000038175.11	ENSMUST00000038275.11	3065	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	5.98377435700541	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCCTTTGTGATCTTAT	4395	False	NA	NA	False	AATAAA	-15	NA	45543217	45565498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_45543520_45544664_45544856_45557875_45558062_45559368_45559567_45560032_45560198_45561831_45562253_45563896
transcript_14180.nic	chr13	+	1057	2	ISM	ENSMUSG00000038175.11	ENSMUST00000038275.11	3065	7	-4	20083	-4	-19106	5prime_fragment	FALSE	canonical	3	48	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGTTGTTGTTTTTTTC	4391	False	NA	NA	False	ATTAAA	-14	NA	45543213	45545415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_+_45543520_45544664
transcript_14182.known	chr13	+	1580	9	FSM	ENSMUSG00000000253.14	ENSMUST00000000260.13	1580	9	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	10.0428768288773	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGCTGGAGTTTGCGT	NA	False	NA	22	True	AATATA	-16	NA	45660919	45699858	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_45661220_45667870_45667991_45670474_45670559_45674327_45674502_45683183_45683266_45685769_45685877_45692500_45692544_45695954_45696115_45699348
transcript_14183.nnic	chr13	+	496	3	NNC	ENSMUSG00000021373.17	novel	3713	13	NA	NA	5750	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	13.5	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAATATTTAACATTTGA	NA	False	NA	NA	False	AAAACA	-32	NA	46799283	46802002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_46799393_46800001_46800143_46801756
transcript_14186.nic	chr13	-	2486	2	ISM	ENSMUSG00000021375.12	ENSMUST00000223881.2	3917	16	33604	0	-491	0	3prime_fragment	FALSE	canonical	3	55	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCCAAAGTGTTGATCGTC	NA	False	NA	-6	True	AATACA	-16	NA	46906510	46902570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_46904103_46905556
transcript_14187.known	chr13	-	2294	1	FSM	ENSMUSG00000044231.4	ENSMUST00000052747.4	2294	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCTGGAAACGTGTCTT	NA	False	NA	-1	True	AATAAA	-18	NA	47168326	47166032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_47166000_47168300
transcript_14188.known	chr13	+	4987	21	FSM	ENSMUSG00000038080.18	ENSMUST00000037025.16	4987	21	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	9.84682690007294	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGTTTTTGAAGCTGTG	1161	False	NA	NA	False	TATAAA	-20	NA	47196974	47238755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_47197147_47201378_47201479_47202653_47202782_47204085_47204176_47205264_47205377_47207094_47207212_47212251_47212291_47214228_47214458_47216433_47216619_47217529_47217707_47218046_47218122_47220920_47221059_47221939_47222112_47225367_47225496_47227186_47227319_47227829_47227905_47230858_47230976_47231743_47231870_47232658_47232776_47233911_47234065_47236350
transcript_14191.known	chr13	-	2556	11	FSM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	0	0	0	0	multi-exon	FALSE	canonical	3	1333	junction_10	113.482333426838	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTTGTATTTAATCTTT	NA	False	NA	-15	True	AATAAA	-20	NA	47259666	47238257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
transcript_14193.nic	chr13	-	2589	10	ISM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	302	0	-58	0	3prime_fragment	FALSE	canonical	3	1428	junction_1	93.7092956902645	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTTGTATTTAATCTTT	NA	False	NA	-15	True	AATAAA	-20	NA	47259364	47238257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_47239556_47239900_47239970_47241500_47241650_47241952_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047
transcript_142.known	SIRV5	+	533	6	FSM	SIRV5A	SIRV507	533	6	0	0	0	0	multi-exon	FALSE	canonical	3	3871	junction_1	2708.37786137754	798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCGTAAGTGGTCAAGCCAC	NA	False	NA	NA	False	NA	NA	NA	1027	3598	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV5_+_1150_1925_2034_2119_2157_2270_2316_3298_3405_3483
transcript_14201.known	chr13	-	2708	9	FSM	ENSMUSG00000021376.12	ENSMUST00000021806.11	2708	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_8	22.6436387314407	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGAGCTTGGTAATTT	NA	False	NA	NA	False	AATAAA	-16	NA	47196686	47177018	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196579
transcript_14202.nic	chr13	-	1055	9	NIC	ENSMUSG00000021376.12	novel	2708	9	NA	NA	-4	2	combination_of_known_junctions	FALSE	canonical	3	43	junction_8	30.2438010177292	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTAGCCATGGTTTCTG	NA	False	NA	0	True	ATTAAA	-19	NA	47196690	47178652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195056_47196602
transcript_14203.nic	chr13	-	1057	9	NIC	ENSMUSG00000021376.12	novel	2708	9	NA	NA	-33	2	combination_of_known_junctions	FALSE	canonical	3	4	junction_8	42.5996992360275	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTAGCCATGGTTTCTG	NA	False	NA	0	True	ATTAAA	-19	NA	47196653	47178652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_47178954_47180727_47180773_47182357_47182444_47185893_47185969_47188496_47188550_47189370_47189504_47193579_47193673_47194874_47195072_47196579
transcript_14208.nic	chr13	-	975	8	ISM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	-41	3801	-30	12	5prime_fragment	FALSE	canonical	3	1333	junction_7	124.152473735701	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAAAACAGAAAGCTACTGC	NA	False	NA	-89	True	AAAAAG	-19	NA	47259707	47242058	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_47242092_47251630_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
transcript_14210.nic	chr13	-	942	7	ISM	ENSMUSG00000021377.16	ENSMUST00000021807.13	2556	11	-41	13373	-30	0	5prime_fragment	FALSE	canonical	3	1333	junction_6	133.111482099279	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGTGTTTTAAGCTGTT	NA	False	NA	26	True	AAGAAA	-12	NA	47259707	47251630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047_47259214_47259548
transcript_14211.known	chr13	-	876	6	FSM	ENSMUSG00000021377.16	ENSMUST00000129352.3	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	1443	junction_3	105.718494124727	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGTGTTTTAAGCTGTT	NA	False	NA	26	True	AAGAAA	-12	NA	47259306	47251630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_47251820_47252818_47252940_47253649_47253745_47255098_47255209_47255448_47255551_47259047
transcript_14214.known	chr13	-	698	3	FSM	ENSMUSG00000021376.12	ENSMUST00000133100.2	698	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	41	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAAAAAAAAGTAAGA	NA	False	NA	NA	False	NA	NA	NA	47196620	47193173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_47193673_47194874_47195056_47196602
transcript_14215.known	chr13	-	672	3	FSM	ENSMUSG00000097326.3	ENSMUST00000180777.3	672	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTTTGTATGTGTGATA	NA	False	NA	1	True	ATTAAA	-15	NA	48427360	48425888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_48426292_48426385_48426533_48427238
transcript_14218.known	chr13	+	786	2	FSM	ENSMUSG00000053181.2	ENSMUST00000065465.2	786	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAATAAAATCAGT	3977	False	NA	NA	False	AGTAAA	-22	NA	48667045	48668335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_48667106_48667609
transcript_14219.known	chr13	-	5105	18	FSM	ENSMUSG00000038014.8	ENSMUST00000060805.7	5105	18	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_8	31.720775722809	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTATGGTGTGGCTTTTA	6383	False	NA	-18	True	AATAAA	-21	NA	49121493	49032694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_49034572_49038748_49038846_49039212_49039355_49042599_49042738_49043230_49043415_49045356_49045567_49051135_49051251_49055533_49055784_49063731_49063907_49066332_49066561_49068337_49068426_49075157_49075442_49075628_49075727_49085772_49085870_49087425_49087555_49099417_49099501_49102532_49102780_49120830
transcript_1422.known	chr1	+	691	3	FSM	ENSMUSG00000026201.13	ENSMUST00000144355.8	691	3	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	43	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCCCTGGTTTGGCCTTT	NA	False	NA	NA	False	CATAAA	-14	NA	75187491	75188879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_75187697_75187883_75188059_75188568
transcript_14221.known	chr13	+	706	4	FSM	ENSMUSG00000037966.16	ENSMUST00000131280.2	706	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	185.030327844443	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCACCTGAGACATGTGGG	NA	False	NA	NA	False	NA	NA	NA	49341011	49349235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_49341114_49347211_49347441_49348314_49348534_49349079
transcript_14222.known	chr13	+	1187	4	FSM	ENSMUSG00000037966.16	ENSMUST00000049022.15	1187	4	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_2	21.013223349966	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGGTTCCATGTGCCA	NA	False	NA	13	True	AATAAA	-15	NA	49340960	49349720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_49341114_49347211_49347441_49348369_49348534_49349079
transcript_14224.known	chr13	-	804	6	FSM	ENSMUSG00000037960.12	ENSMUST00000048946.7	804	6	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_5	10.4115320678563	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCCTGTCGAATGTCTT	NA	False	NA	-7	True	ATTAAA	-13	NA	49369502	49356426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_49356712_49357193_49357266_49357404_49357465_49358667_49358822_49361479_49361623_49369412
transcript_14226.nnic	chr13	-	771	5	NIC	ENSMUSG00000037960.12	novel	804	6	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_2	158.076721878966	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTGTCGAATGTCTTC	NA	False	NA	-6	True	ATTAAA	-14	NA	49369528	49356425	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_49356712_49357193_49357266_49358667_49358822_49361479_49361623_49369412
transcript_14228.known	chr13	-	1418	5	FSM	ENSMUSG00000021384.15	ENSMUST00000058196.13	1418	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	5.02493781056044	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCGGTTGGCAGAATGCT	NA	False	NA	NA	False	CATAAA	-25	NA	49401770	49384165	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_49384808_49390899_49391089_49392264_49392413_49393958_49394148_49401520
transcript_1423.known	chr1	+	636	3	FSM	ENSMUSG00000026201.13	ENSMUST00000123825.8	636	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	98.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGCCCTGGTTTGGCCTT	NA	False	NA	NA	False	CATAAA	-13	NA	75187517	75188878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_75187669_75187883_75188059_75188568
transcript_14231.known	chr13	-	1144	8	FSM	ENSMUSG00000021391.11	ENSMUST00000021818.9	1144	8	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_6	22.1387092889263	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAGTGCTTTGTACAGTT	NA	False	NA	-4	True	AATAAA	-21	NA	49806261	49617498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49794701_49794791_49801041_49801131_49803596_49803776_49806058
transcript_14232.nnic	chr13	-	1051	7	NIC	ENSMUSG00000021391.11	novel	1144	8	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_5	68.711959172573	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAGTGCTTTGTACAGTT	NA	False	NA	-4	True	AATAAA	-21	NA	49806257	49617498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49794701_49794791_49803596_49803776_49806058
transcript_14236.nnic	chr13	-	966	6	NIC	ENSMUSG00000021391.11	novel	1144	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_4	81.0668859646157	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATAGTGCTTTGTACAGTT	NA	False	NA	-4	True	AATAAA	-21	NA	49806261	49617498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_49617814_49618170_49618263_49619154_49619235_49780730_49780828_49803596_49803776_49806058
transcript_14242.known	chr13	+	4421	13	FSM	ENSMUSG00000021385.11	ENSMUST00000220447.2	4421	13	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_9	16.41053184865	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTATGACATTTTCAACT	NA	False	NA	NA	False	ATTAAA	-29	NA	49574724	49618049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_49574943_49584344_49584393_49585845_49585942_49587304_49587372_49588945_49589068_49590186_49590277_49595428_49595488_49596897_49596971_49599778_49600053_49602712_49602864_49603456_49603560_49612088_49612169_49615009
transcript_14246.known	chr13	+	4381	17	FSM	ENSMUSG00000021392.9	ENSMUST00000221142.2	4381	17	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	40.4735639028737	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGTCTTTTATTTAAAAA	NA	False	NA	23	True	ATTAAA	-16	NA	49806814	49832492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_49807159_49807826_49807979_49808648_49808712_49810150_49810230_49812171_49812308_49813425_49813495_49814433_49816252_49817529_49817644_49818203_49818327_49818854_49818946_49820830_49820967_49823184_49823263_49826027_49826300_49828861_49828989_49829797_49829866_49830230_49830311_49831861
transcript_14247.known	chr13	+	4368	17	FSM	ENSMUSG00000021392.9	ENSMUST00000222197.2	4368	17	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_13	21.5653077882046	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTCAGAACAGCATCCATT	NA	False	NA	-69	True	NA	NA	NA	49806553	49832214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_49807159_49807822_49807979_49808648_49808712_49810150_49810230_49812171_49812308_49813425_49813495_49814433_49816252_49817529_49817644_49818203_49818327_49818854_49818946_49820830_49820967_49823184_49823263_49826027_49826300_49828861_49828989_49829797_49829866_49830230_49830311_49831861
transcript_14248.known	chr13	+	600	6	FSM	ENSMUSG00000021392.9	ENSMUST00000222333.2	600	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	55.5215273565128	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGCTGTGCCTGGAACAGA	NA	False	NA	NA	False	NA	NA	NA	49806825	49812271	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_49806874_49807004_49807159_49807822_49807979_49808648_49808712_49810150_49810230_49812171
transcript_1425.known	chr1	-	815	3	FSM	ENSMUSG00000026202.14	ENSMUST00000187103.2	815	3	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	30.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGGCTGTAGTGGAGCCCTA	NA	False	NA	NA	False	AAAAAG	-43	NA	75195887	75193078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_75193620_75193855_75194079_75195836
transcript_14251.known	chr13	+	4426	34	FSM	ENSMUSG00000037851.14	ENSMUST00000165316.8	4426	34	0	0	0	0	multi-exon	FALSE	canonical	1	598	junction_17	241.366305222171	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAAGTAGTTATTCTC	NA	False	NA	30	True	ATTAAA	-31	NA	49835575	49887743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
transcript_14252.nic	chr13	+	4429	34	NIC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	1	120	junction_1	357.515439185776	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGGAAGTAGTTATTCTC	NA	False	NA	30	True	ATTAAA	-31	NA	49835677	49887743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_49835785_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49857746_49857870_49858308_49858401_49859262_49859362_49860154_49860282_49861881_49861956_49863054_49863250_49865225_49865313_49868289_49868374_49869160_49869306_49871381_49871503_49873053_49873146_49874556_49874635_49875621_49875744_49876145_49876249_49876468_49876553_49878093_49878269_49878696_49878810_49879634_49879731_49880602_49880780_49882134_49882241_49883490_49883617_49884893_49885038_49885815_49885969_49887134
transcript_14255.nnic	chr13	+	1418	11	NNC	ENSMUSG00000037851.14	novel	4426	34	NA	NA	-3	-7960	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	514.720594109076	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCTTTTGGTTTTCATTT	NA	False	NA	NA	False	AATAAA	-15	NA	49835602	49857297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_49835680_49840861_49840988_49841632_49841790_49841999_49842120_49843923_49844007_49844969_49845088_49846499_49846648_49855319_49855408_49855963_49856025_49856642_49856739_49856953
transcript_14261.known	chr13	+	1798	10	FSM	ENSMUSG00000037816.11	ENSMUST00000046974.5	1798	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_8	4.29469957557504	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAGAGACACATTCCTGCA	NA	False	NA	NA	False	ATTAAA	-21	NA	50571899	50587805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_50572024_50573875_50573914_50577237_50577399_50577787_50577907_50579592_50579803_50580657_50580817_50585575_50585787_50586206_50586383_50586463_50586592_50587333
transcript_14268.known	chr13	+	4434	6	FSM	ENSMUSG00000021395.12	ENSMUST00000095797.6	4434	6	0	0	0	0	multi-exon	FALSE	canonical	3	703	junction_1	64.2227374066226	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGTGGCTGTGAACTTT	NA	False	NA	NA	False	AATAAA	-13	NA	51254915	51306582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_51255027_51277123_51277325_51281960_51282010_51293392_51293647_51298337_51298572_51302997
transcript_14271.nnic	chr13	+	1130	6	NNC	ENSMUSG00000021395.12	novel	4434	6	NA	NA	501	-3272	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_1	296.576735432839	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGATTGCTTTCCAGTT	NA	False	NA	NA	False	ATTAAA	-22	NA	51255416	51303258	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_51255548_51277123_51277325_51281960_51282010_51293392_51293647_51298337_51298572_51302997
transcript_14272.known	chr13	+	1167	2	FSM	ENSMUSG00000021396.6	ENSMUST00000021828.6	1167	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCTCTGATGTCCTTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	51325057	51329224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_51325661_51328660
transcript_14273.known	chr13	+	4463	2	FSM	ENSMUSG00000067586.5	ENSMUST00000087978.5	4463	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGACTAGGTTTCATTTG	NA	False	NA	NA	False	AATAAA	-15	NA	51562674	51576833	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_51562982_51572677
transcript_14275.known	chr13	+	692	3	FSM	ENSMUSG00000062248.6	ENSMUST00000075853.6	692	3	0	0	0	0	multi-exon	FALSE	canonical	3	3514	junction_2	7.5	1432	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATTGTTGAAATTAATTTG	NA	False	NA	NA	False	AATAAA	-24	NA	51799267	51804696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_51799508_51803620_51803749_51804372
transcript_14279.known	chr13	+	3328	17	FSM	ENSMUSG00000035139.15	ENSMUST00000040117.15	3328	17	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_13	19.2596363867546	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGCTATTGTGATCTT	5494	False	NA	8	True	AATAAA	-20	NA	51805732	51838080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_51805857_51806642_51806792_51808421_51808672_51809134_51809277_51810916_51811147_51816656_51816736_51819307_51819511_51824842_51824966_51827105_51827196_51827923_51828066_51830322_51830490_51831176_51831316_51832869_51833027_51833768_51833990_51836035_51836191_51836479_51836670_51837313
transcript_1428.known	chr1	+	1500	8	FSM	ENSMUSG00000026201.13	ENSMUST00000191108.7	1500	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	77.7888297946198	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTTAGGTCAATGTGT	NA	False	NA	9	True	AATAAA	-17	NA	75187513	75190886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_75187697_75187883_75188059_75188568_75188789_75189243_75189378_75189529_75189651_75189756_75189873_75190219_75190342_75190457
transcript_14284.known	chr13	+	1071	4	FSM	ENSMUSG00000021453.3	ENSMUST00000021903.3	1071	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	4.02768199119819	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAACTTAATGCCTTTT	NA	False	NA	NA	False	AATAAA	-8	NA	52000713	52002504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_52000869_52001387_52001490_52001591_52001806_52001904
transcript_14285.known	chr13	+	863	3	FSM	ENSMUSG00000021453.3	ENSMUST00000132480.2	863	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	4.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAGGGCCGGGAAGAACC	NA	False	NA	NA	False	NA	NA	NA	52000779	52002260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_52000869_52001387_52001806_52001904
transcript_14288.known	chr13	+	3270	8	FSM	ENSMUSG00000113211.2	ENSMUST00000220691.2	3270	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	3.45229884959845	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAATGTGTGTATAAT	NA	False	NA	NA	False	NA	NA	NA	52250776	52278194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_52250877_52252577_52252882_52253329_52253416_52272202_52272728_52273173_52273596_52274101_52274239_52276192_52276778_52277083
transcript_1429.known	chr1	+	1570	7	FSM	ENSMUSG00000026201.13	ENSMUST00000135484.8	1570	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	83.8424448328861	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATATTTTAGGTCAATG	NA	False	NA	6	True	AATAAA	-14	NA	75187519	75190883	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_75187644_75187883_75188059_75188568_75188789_75189243_75189651_75189776_75189873_75190219_75190342_75190457
transcript_14291.nic	chr13	+	2509	13	ISM	ENSMUSG00000021457.15	ENSMUST00000120135.8	5363	14	246	5178	-18	0	5prime_fragment	FALSE	canonical	3	17	junction_6	23.0487104965886	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATCTCTGAGCCAATTTT	NA	False	NA	NA	False	ATTAAA	-31	NA	52737454	52797650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_+_52737642_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52778743_52778813_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075
transcript_14292.known	chr13	+	2519	13	FSM	ENSMUSG00000021457.15	ENSMUST00000118756.8	2519	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	27.5650745207288	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATCTCTGAGCCAATTTT	NA	False	NA	NA	False	ATTAAA	-31	NA	52737472	52797650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_52737642_52750993_52751091_52764831_52765289_52766330_52766492_52774836_52774976_52776715_52776798_52777280_52777313_52785692_52785781_52786923_52787102_52792073_52792284_52794640_52794831_52795900_52796042_52797075
transcript_14299.nic	chr13	-	1216	10	NIC	ENSMUSG00000021460.18	novel	1320	10	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_9	115.424605289223	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGTTATACCAAATGT	NA	False	NA	-14	True	AATAAA	-22	NA	53083527	52989154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53041276_53041334_53043138_53043232_53052685_53052773_53073036_53073125_53073234_53073303_53083424
transcript_143.known	SIRV5	+	552	2	FSM	SIRV5A	SIRV506	552	2	0	0	0	0	multi-exon	FALSE	canonical	3	11478	junction_1	0	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTACGGCCAGTTTAGC	NA	False	NA	NA	False	AATGAA	-17	NA	1008	2398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV5_+_1150_1987
transcript_14300.known	chr13	-	1320	10	FSM	ENSMUSG00000021460.18	ENSMUST00000021913.16	1320	10	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_3	77.7090172246741	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGTTATACCAAATGT	NA	False	NA	-14	True	AATAAA	-22	NA	53083697	52989154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53041276_53041334_53043138_53043232_53052685_53052773_53073036_53073125_53073234_53073303_53083490
transcript_14303.nnic	chr13	-	902	5	NNC	ENSMUSG00000021460.18	novel	1258	10	NA	NA	32865	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	125.449192902944	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAAGTTATACCAAATGT	NA	False	NA	-14	True	AATAAA	-22	NA	53034117	52989154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_52989588_52992121_52992170_52993593_52993645_52994912_52995101_53033935
transcript_14304.known	chr13	-	1647	5	FSM	ENSMUSG00000021460.18	ENSMUST00000120535.8	1647	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	187.838361364233	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCTTGGGTAGTGGTGT	NA	False	NA	NA	False	AATAAA	-13	NA	53083688	53049962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_53051169_53052685_53052773_53073036_53073125_53073234_53073303_53083490
transcript_14305.known	chr13	-	2627	4	FSM	ENSMUSG00000021460.18	ENSMUST00000119311.8	2627	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	210.944437128727	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGAGGCTGCTCTCTCA	NA	False	NA	-24	True	AATAAA	-17	NA	53083690	53061080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_53063352_53073036_53073125_53073234_53073303_53083490
transcript_14306.known	chr13	-	3235	4	FSM	ENSMUSG00000021460.18	ENSMUST00000110031.4	3235	4	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	164.004742478855	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTCTTGGTCACAGTGC	NA	False	NA	NA	False	ATTAAA	-17	NA	53083717	53064245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_53067098_53073036_53073125_53073234_53073303_53083490
transcript_14309.known	chr13	-	2606	15	FSM	ENSMUSG00000021468.9	ENSMUST00000021920.8	2606	15	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_11	13.0690864412232	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTCTGTTTGGATAGCAG	1829	False	NA	-18	True	AATAAA	-27	NA	53531433	53486783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_53488014_53489376_53489451_53491643_53491762_53496207_53496263_53497163_53497261_53497814_53497911_53498836_53498945_53505636_53505727_53508186_53508317_53512796_53512930_53521347_53521421_53521901_53521996_53527364_53527460_53527997_53528106_53531328
transcript_14312.known	chr13	-	2453	2	FSM	ENSMUSG00000021469.10	ENSMUST00000021922.10	2453	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAAGTCTGTCCCAACTC	NA	False	NA	NA	False	ATTAAA	-18	NA	53627110	53620919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_53622630_53626367
transcript_14315.nnic	chr13	+	1304	12	NNC	ENSMUSG00000021474.10	novel	2783	11	NA	NA	-16	-1561	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_6	341.21576509169	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCTTCTGGTAGATTTTA	NA	False	NA	NA	False	NA	NA	NA	54225871	54260800	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247571_54247638_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
transcript_14320.known	chr13	+	2783	11	FSM	ENSMUSG00000021474.10	ENSMUST00000021930.10	2783	11	0	0	0	0	multi-exon	FALSE	canonical	3	779	junction_1	55.358919787149	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACTGTCTCTTACTTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	54225887	54262361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_54225952_54239467_54239643_54242907_54243079_54245241_54245341_54246391_54246468_54247019_54247106_54247872_54248001_54250749_54250800_54258820_54258871_54259766_54259815_54260525
transcript_14324.known	chr13	-	2335	6	FSM	ENSMUSG00000025872.6	ENSMUST00000026990.6	2335	6	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_3	36.0699320764539	551	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTGTCTAAAGTTACTA	NA	False	NA	-3	True	AATAAA	-15	NA	54616662	54606649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_54608051_54611284_54611386_54611494_54611657_54613992_54614198_54615638_54615796_54616353
transcript_14326.nnic	chr13	-	2626	10	NNC	ENSMUSG00000025871.19	novel	2727	9	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	170.539521504728	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGGTCTGTCTTGTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	54713181	54699035	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_54699908_54699936_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54711997_54712086_54712327_54712435_54712994
transcript_14327.known	chr13	+	4819	10	FSM	ENSMUSG00000043183.19	ENSMUST00000121401.8	4819	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	7.33333333333333	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTAGACTCCAGGGCTTCT	NA	False	NA	17	True	AATAAA	-17	NA	54651591	54699103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_54651818_54671782_54674486_54676116_54676350_54676966_54677037_54684894_54685050_54687516_54687670_54689236_54689366_54694789_54694947_54695067_54695153_54698195
transcript_14329.known	chr13	-	2727	9	FSM	ENSMUSG00000025871.19	ENSMUST00000026989.15	2727	9	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_7	24.8696602308918	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGTCTTGTCCATTCTG	NA	False	NA	NA	False	AATAAA	-26	NA	54713248	54699030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54711997_54712086_54712327_54712435_54712994
transcript_14331.known	chr13	-	2502	8	FSM	ENSMUSG00000025871.19	ENSMUST00000153065.8	2502	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_6	177.014469603419	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCAGGTCTGTCTTGTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	54713116	54699035	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54707010_54707138_54709505_54709685_54712327_54712435_54712994
transcript_14335.known	chr13	-	946	5	FSM	ENSMUSG00000025871.19	ENSMUST00000153708.2	946	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	214.957408572024	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCCTAGGTAAATTATGC	NA	False	NA	NA	False	TTTAAA	-33	NA	54713146	54700208	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_54700631_54700710_54700851_54701010_54701118_54704339_54704465_54712994
transcript_14336.known	chr13	+	1046	4	FSM	ENSMUSG00000025870.11	ENSMUST00000026988.11	1046	4	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_3	14.6363322667334	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCAGCAGGCTCAGTGCC	2674	False	NA	NA	False	NA	NA	NA	54722827	54728941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_54723091_54723562_54723762_54726605_54726782_54728533
transcript_14337.known	chr13	+	654	3	FSM	ENSMUSG00000025870.11	ENSMUST00000156024.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	15	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATAGGATTGCATGGCATA	2706	False	NA	NA	False	NA	NA	NA	54722859	54726829	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_54723091_54723562_54723762_54726605
transcript_14338.known	chr13	-	1756	5	FSM	ENSMUSG00000025869.12	ENSMUST00000026987.12	1756	5	0	0	0	0	multi-exon	FALSE	canonical	3	1006	junction_4	30.4302481094059	575	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAAGATGCACTTTTATTT	NA	False	NA	-3	True	NA	NA	NA	54737903	54731997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_54733238_54733632_54733740_54736410_54736481_54737475_54737585_54737673
transcript_14341.known	chr13	+	648	2	FSM	ENSMUSG00000025868.7	ENSMUST00000026986.7	648	2	0	0	0	0	multi-exon	FALSE	canonical	3	1416	junction_1	0	707	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTCTTAATCTCATTCC	5978	False	NA	23	True	AATAAA	-27	NA	54738019	54738971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_54738233_54738536
transcript_14342.known	chr13	-	2186	5	FSM	ENSMUSG00000047547.15	ENSMUST00000091609.11	2186	5	0	0	0	0	multi-exon	FALSE	canonical	3	406	junction_1	26.0708170182678	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTTAAAGACTGTATTTTA	7405	False	NA	19	True	AATAAA	-41	NA	54759157	54740213	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_54741856_54746534_54746647_54746856_54746975_54754456_54754504_54758890
transcript_1435.known	chr1	+	1855	10	FSM	ENSMUSG00000026203.17	ENSMUST00000188290.7	1855	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_9	6.24400947476761	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGGTGGCCTGTGTTCC	2259	False	NA	4	True	AATAAA	-14	NA	75213130	75222334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_75213234_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221437
transcript_14351.nic	chr13	+	1920	12	NIC	ENSMUSG00000025873.17	novel	4322	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	187.610022816365	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAATGAGGCTGACTTA	NA	False	NA	1	True	NA	NA	NA	54769596	54809399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_54769717_54777202_54777278_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
transcript_14352.nic	chr13	+	2031	12	NIC	ENSMUSG00000025873.17	novel	4322	11	NA	NA	0	111	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	187.610022816365	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCGCATCCTTTGCCACT	NA	False	NA	23	True	AATAAA	-16	NA	54769596	54809510	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_54769717_54777202_54777278_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
transcript_14357.known	chr13	+	1748	11	FSM	ENSMUSG00000025873.17	ENSMUST00000026991.16	1748	11	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_3	87.926617130423	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAATGAGGCTGACTTA	NA	False	NA	1	True	NA	NA	NA	54769636	54809399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_54769717_54786062_54786132_54789231_54789310_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
transcript_14362.known	chr13	+	4322	11	FSM	ENSMUSG00000025873.17	ENSMUST00000126071.9	4322	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	132.701770900015	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACCAGCTGTGGGTCTT	NA	False	NA	NA	False	ATTAAA	-22	NA	54769596	54811876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54796104_54796244_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
transcript_14368.nic	chr13	+	1686	10	NIC	ENSMUSG00000025873.17	novel	1748	11	NA	NA	-37	0	combination_of_known_junctions	TRUE	canonical	3	44	junction_4	145.409086611311	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAATGAGGCTGACTTA	NA	False	NA	1	True	NA	NA	NA	54769559	54809399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_54769717_54786062_54786132_54789231_54789310_54793057_54793135_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
transcript_14371.nic	chr13	+	1677	10	NIC	ENSMUSG00000025873.17	novel	4322	11	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	175.481418945317	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAATGAGGCTGACTTA	NA	False	NA	1	True	NA	NA	NA	54769625	54809399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
transcript_14372.nic	chr13	+	1854	10	NIC	ENSMUSG00000025873.17	novel	4322	11	NA	NA	-37	111	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	175.481418945317	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCGCATCCTTTGCCACT	NA	False	NA	23	True	AATAAA	-16	NA	54769559	54809510	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_54769717_54786062_54786132_54789231_54789367_54793057_54793135_54797790_54797877_54797971_54798064_54799855_54800034_54803218_54803391_54804094_54804239_54808766
transcript_14374.known	chr13	-	3941	11	FSM	ENSMUSG00000034928.17	ENSMUST00000177950.8	3941	11	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_10	160.927934181732	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCTCTGGCTGCTCTCT	NA	False	NA	-5	True	AATAAA	-28	NA	54835621	54827211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_54829625_54829746_54829847_54829925_54830048_54830139_54830228_54830392_54830515_54830601_54830764_54830855_54831030_54831407_54831576_54831773_54831900_54832150_54832302_54835306
transcript_14376.known	chr13	-	1351	6	FSM	ENSMUSG00000034891.14	ENSMUST00000036825.14	1351	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	35.7636687156114	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGCGCCGCCTAGGCAGG	NA	False	NA	-1	True	AATAAA	-16	NA	54914408	54906672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_54907355_54907680_54907771_54910455_54910575_54910734_54910774_54913375_54913506_54914117
transcript_14377.nic	chr13	+	1179	9	NIC	ENSMUSG00000025875.15	novel	1048	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_8	99.0959131347	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTGGTTTATGTTCACCG	NA	False	NA	17	True	AATAAA	-18	NA	54937215	54944588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969_54944032_54944410
transcript_1438.known	chr1	+	1823	10	FSM	ENSMUSG00000026203.17	ENSMUST00000188346.7	1823	10	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	13.4669233565562	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGGTGGCCTGTGTTCCTC	2241	False	NA	6	True	AATAAA	-16	NA	75213112	75222336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_75213182_75213495_75213593_75214098_75214209_75215923_75215978_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221437
transcript_14380.known	chr13	+	1585	8	FSM	ENSMUSG00000025875.15	ENSMUST00000026993.14	1585	8	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_3	20.9606044468071	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGGTTTATGTTCACCGT	NA	False	NA	18	True	AATAAA	-19	NA	54937189	54944589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_54937495_54940421_54940473_54940552_54940700_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969
transcript_14386.nic	chr13	+	1867	7	NIC	ENSMUSG00000025875.15	novel	1585	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	379	junction_1	14.3488288333539	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGGTTTATGTTCACCGT	NA	False	NA	18	True	AATAAA	-19	NA	54937215	54944589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_54937495_54940421_54940473_54940552_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969
transcript_1439.known	chr1	+	1732	9	FSM	ENSMUSG00000026203.17	ENSMUST00000187058.7	1732	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	13.076696830622	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCGGTGGCCTGTGTTCC	2328	False	NA	4	True	AATAAA	-14	NA	75213199	75222334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_75213234_75213495_75213593_75214098_75214209_75216151_75216275_75217535_75217629_75217814_75217918_75218052_75218124_75220101_75220306_75221437
transcript_14392.known	chr13	+	712	6	FSM	ENSMUSG00000025875.15	ENSMUST00000163796.8	712	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	159.188441791482	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGACATCAAGGCGGTG	NA	False	NA	NA	False	NA	NA	NA	54937275	54944000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_54937495_54941007_54941179_54942865_54942992_54943223_54943272_54943778_54943896_54943969
transcript_14394.known	chr13	+	487	2	FSM	ENSMUSG00000085896.3	ENSMUST00000154615.3	487	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGGTGAGAGTCAACTT	NA	False	NA	NA	False	AATAAA	-23	NA	55061047	55062292	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_55061126_55061883
transcript_14396.nnic	chr13	-	2193	16	NNC	ENSMUSG00000025878.17	novel	2931	15	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	48.0872355435642	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATCTTATTTCAATAG	NA	False	NA	NA	False	AATATA	-12	NA	55248082	55176107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223272_55223568_55223808_55224114_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
transcript_14397.nnic	chr13	-	1953	15	NNC	ENSMUSG00000025878.17	novel	2931	15	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_10	38.5560816029252	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATCTTATTTCAATAG	NA	False	NA	NA	False	AATATA	-12	NA	55248081	55176107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223272_55224114_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
transcript_14398.known	chr13	-	2936	15	FSM	ENSMUSG00000025878.17	ENSMUST00000127195.8	2936	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_10	39.2030949423795	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTTGTCTGTTTAAACC	NA	False	NA	NA	False	AATAGA	-22	NA	55248113	55175692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223804_55224110_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
transcript_144.known	SIRV5	+	546	2	FSM	SIRV5A	SIRV511	546	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTACGGCCAGTTTAGC	NA	False	NA	NA	False	AATGAA	-17	NA	1008	2398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV5_+_1144_1987
transcript_14402.nnic	chr13	-	1752	14	NIC	ENSMUSG00000025878.17	novel	2931	15	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	40.0526281004316	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATCTTATTTCAATAG	NA	False	NA	NA	False	AATATA	-12	NA	55248081	55176107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55224114_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
transcript_14405.nnic	chr13	-	2481	14	NIC	ENSMUSG00000025878.17	novel	2931	15	NA	NA	-24	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	49.8302443746553	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATCTTATTTCAATAG	NA	False	NA	NA	False	AATATA	-12	NA	55248137	55176107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_55176532_55177228_55177272_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55223070_55223808_55224114_55224221_55225215_55225341_55233422_55233508_55240939_55241095_55248009
transcript_14407.known	chr13	-	1678	13	FSM	ENSMUSG00000025878.17	ENSMUST00000099496.4	1678	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	37.4398591818339	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAATCTTATTTCAATAG	NA	False	NA	NA	False	AATATA	-12	NA	55248113	55176107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_55176532_55177228_55177272_55178765_55178830_55182701_55182880_55188357_55188437_55198553_55198708_55203787_55203892_55208078_55208156_55217534_55217621_55225215_55225341_55233422_55233508_55240939_55241095_55248009
transcript_14411.known	chr13	-	2735	4	FSM	ENSMUSG00000025878.17	ENSMUST00000133187.2	2735	4	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_3	8.65383665716478	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAGTTAAAAAAAGAG	NA	False	NA	NA	False	TATAAA	-3	NA	55248112	55222948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_55225341_55233422_55233508_55240939_55241095_55248009
transcript_14413.known	chr13	+	3333	7	FSM	ENSMUSG00000021481.12	ENSMUST00000021937.12	3333	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	9.82202739877171	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATCCGATGTGTGCGCT	19	False	NA	11	True	NA	NA	NA	55253139	55282638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_55253332_55260848_55260953_55261490_55261584_55263292_55263438_55270142_55270329_55278346_55278441_55280119
transcript_14416.known	chr13	+	3324	18	FSM	ENSMUSG00000005320.10	ENSMUST00000005452.6	3324	18	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	3.40364144505634	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTGTGTGGCAGGGTGT	NA	False	NA	NA	False	AATAAA	-20	NA	55300452	55316572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_55300741_55303250_55303385_55304043_55304308_55304398_55304480_55304586_55304754_55306906_55307031_55307735_55307927_55308061_55308201_55308928_55309123_55309206_55309353_55309434_55309557_55313702_55313814_55313908_55314100_55314670_55314794_55314900_55314972_55315212_55315351_55315618_55315725_55315838
transcript_14419.nic	chr13	+	923	6	NIC	ENSMUSG00000021488.9	novel	12784	23	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_5	91.9469412215545	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTGTCTTTTTTTTC	NA	False	NA	NA	False	AATACA	-15	NA	55357584	55388660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_55357689_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
transcript_14420.known	chr13	+	1149	6	FSM	ENSMUSG00000021488.9	ENSMUST00000224156.2	1149	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	114.053671576149	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTGTTGTCTTTTTTTT	NA	False	NA	NA	False	AATACA	-14	NA	55358547	55388659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_55358879_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
transcript_14422.known	chr13	+	1001	6	FSM	ENSMUSG00000021488.9	ENSMUST00000224918.2	1001	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_5	91.9469412215545	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTGTCTTTTTTTTC	NA	False	NA	NA	False	AATACA	-15	NA	55359631	55388660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_55359814_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
transcript_14423.known	chr13	+	852	6	FSM	ENSMUSG00000021488.9	ENSMUST00000224693.2	852	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	114.325150338847	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTGTCTTTTTTTTC	NA	False	NA	NA	False	AATACA	-15	NA	55359887	55388660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_55359921_55361016_55361131_55361873_55361964_55381707_55381844_55386502_55386676_55388354
transcript_14424.nic	chr13	+	1532	5	NIC	ENSMUSG00000021488.9	novel	12784	23	NA	NA	-10	-1069	combination_of_known_junctions	FALSE	canonical	3	116	junction_1	64.355943781441	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTACTTACCTTGTTGG	NA	False	NA	6	True	AATAAA	-17	NA	55357584	55387590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_55357689_55361016_55361131_55361873_55361964_55381707_55381844_55386502
transcript_14427.known	chr13	-	1168	8	FSM	ENSMUSG00000034789.9	ENSMUST00000035242.9	1168	8	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_3	95.4118890465364	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTGTGTGCACTGGGTG	6442	False	NA	-22	True	AATAAA	-14	NA	55469758	55467697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_55468028_55468124_55468188_55468315_55468367_55468557_55468658_55468739_55468808_55468914_55468994_55469202_55469272_55469350
transcript_14439.known	chr13	-	1327	6	FSM	ENSMUSG00000021485.15	ENSMUST00000021941.8	1327	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	5.62138772902208	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCGTACAGTCTATCACC	6155	False	NA	-7	True	NA	NA	NA	55477571	55472980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_55473712_55473825_55474010_55476182_55476298_55476426_55476457_55477081_55477188_55477410
transcript_14446.known	chr13	+	2644	5	FSM	ENSMUSG00000021486.8	ENSMUST00000021942.8	2644	5	0	0	0	0	multi-exon	FALSE	canonical	3	1299	junction_2	62.1248742453456	2523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGAGTCAGATAGCTT	4034	False	NA	18	True	NA	NA	NA	55468312	55473085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_55470095_55470665_55470892_55472143_55472258_55472339_55472419_55472642
transcript_1445.known	chr1	-	1571	15	FSM	ENSMUSG00000026209.16	ENSMUST00000113605.10	1571	15	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_14	185.094639334056	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	-1	True	ATTAAA	-17	NA	75293589	75285208	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293534
transcript_14455.known	chr13	+	1204	4	FSM	ENSMUSG00000021486.8	ENSMUST00000224220.2	1204	4	0	0	0	0	multi-exon	FALSE	canonical	3	1299	junction_2	69.7726466620138	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTTCTGGAGTCAGATAG	5553	False	NA	15	True	NA	NA	NA	55469831	55473082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_55470095_55470665_55470892_55472143_55472419_55472642
transcript_14456.known	chr13	-	1742	4	FSM	ENSMUSG00000021485.15	ENSMUST00000146181.8	1742	4	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	6.23609564462324	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTTCCTGTCCATGGTTT	6180	False	NA	-3	True	ATTAAA	-12	NA	55477546	55473294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_55473712_55473825_55474010_55476182_55477188_55477410
transcript_14463.known	chr13	-	4315	8	FSM	ENSMUSG00000021484.9	ENSMUST00000021940.8	4315	8	0	0	0	0	multi-exon	FALSE	canonical	3	2192	junction_4	110.260729960528	1323	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGAGTTGTGTGCTCTGT	2839	False	NA	-3	True	NA	NA	NA	55510596	55491645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_55494851_55496127_55496248_55498968_55499084_55499192_55499355_55499523_55499604_55500758_55500877_55509933_55510053_55510200
transcript_14466.known	chr13	+	1846	10	FSM	ENSMUSG00000052087.15	ENSMUST00000135851.2	1846	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.39664500999739	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCATGAGGTGTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	55526981	55532499	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_55527260_55527392_55527505_55527817_55527931_55528712_55528917_55530657_55530735_55530930_55531058_55531147_55531230_55531337_55531385_55531466_55531582_55531808
transcript_14467.known	chr13	-	2940	14	FSM	ENSMUSG00000034675.18	ENSMUST00000109923.9	2940	14	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_13	5.80246835866034	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCGGGCCTGCTGCTCTGG	NA	False	NA	NA	False	AATAAA	-14	NA	55635924	55621241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_55622107_55622268_55622372_55622672_55623350_55623958_55624130_55625363_55625494_55625589_55625650_55629161_55629226_55629351_55629504_55629725_55629804_55629963_55630111_55630225_55630301_55630504_55630618_55631199_55631256_55635675
transcript_14468.known	chr13	-	2378	14	FSM	ENSMUSG00000034675.18	ENSMUST00000109921.9	2378	14	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	11.9649389180894	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTGTAGCTTAGTTCTTT	NA	False	NA	NA	False	NA	NA	NA	55635874	55621756	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_55622107_55622268_55622375_55622672_55623350_55623958_55624130_55625363_55625494_55625589_55625650_55629161_55629226_55629351_55629504_55629725_55629804_55629963_55630111_55630225_55630301_55630504_55630618_55631199_55631256_55635675
transcript_14472.known	chr13	-	1697	13	FSM	ENSMUSG00000021493.16	ENSMUST00000046246.13	1697	13	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	33.4015967682185	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTCTGTGCCTCCCCGC	NA	False	NA	-7	True	AATAAA	-15	NA	55661259	55646228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_55646548_55646706_55646823_55646913_55647035_55652470_55652652_55653746_55653982_55654118_55654181_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
transcript_14477.known	chr13	-	899	8	FSM	ENSMUSG00000021493.16	ENSMUST00000069929.13	899	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	61.7060179647109	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTTGCCTCTGTCTCCC	NA	False	NA	-3	True	AATAAA	-16	NA	55661247	55654586	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_55654937_55655142_55655180_55655300_55655438_55655676_55655694_55656592_55656624_55656704_55656857_55660124_55660232_55661179
transcript_14478.known	chr13	-	1006	8	FSM	ENSMUSG00000021493.16	ENSMUST00000069968.13	1006	8	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	27.1751687376246	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCCTCTGTCTCCCA	NA	False	NA	-2	True	AATAAA	-17	NA	55661251	55654585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_55654937_55655142_55655180_55655300_55655438_55656020_55656140_55656592_55656624_55656704_55656857_55660124_55660232_55661179
transcript_14479.known	chr13	-	2199	17	FSM	ENSMUSG00000021494.10	ENSMUST00000224765.2	2199	17	0	0	0	0	multi-exon	FALSE	canonical	3	642	junction_9	44.9861089671023	219	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTCTTCCTCTCTCACC	NA	False	NA	-5	True	ATTAAA	-21	NA	55684471	55678228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_55678545_55678993_55679105_55679190_55679263_55679347_55679498_55679644_55679742_55679850_55679923_55680160_55680293_55680811_55680975_55681764_55681902_55681975_55682130_55682228_55682302_55683101_55683239_55683371_55683433_55683542_55683618_55683698_55683859_55684108_55684220_55684293
transcript_1448.known	chr1	-	2510	15	FSM	ENSMUSG00000026209.16	ENSMUST00000185797.7	2510	15	0	0	0	0	multi-exon	FALSE	canonical	3	522	junction_14	119.683362013511	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGGTTTGAAATGGATTG	NA	False	NA	NA	False	TATAAA	-15	NA	75294303	75284539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293978
transcript_14492.known	chr13	+	1420	5	FSM	ENSMUSG00000058569.9	ENSMUST00000109905.5	1420	5	0	0	0	0	multi-exon	FALSE	canonical	3	616	junction_1	31.3847096529504	795	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTCGTGGTTACTCTTTT	NA	False	NA	NA	False	NA	NA	NA	55740981	55745510	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_55741171_55741313_55741415_55742517_55742644_55743280_55743428_55744653
transcript_14494.known	chr13	+	2130	6	FSM	ENSMUSG00000021504.15	ENSMUST00000064701.8	2130	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_4	8.85437744847146	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACACTGGCAAGGAACTGG	NA	False	NA	5	True	AATAAA	-18	NA	55747877	55758255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_55748006_55751832_55752196_55755009_55755236_55756154_55756239_55756510_55756616_55757031
transcript_14499.known	chr13	+	1382	4	FSM	ENSMUSG00000021501.5	ENSMUST00000021963.5	1382	4	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	4.49691252107735	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAGAAGTCTGTACATT	NA	False	NA	NA	False	AATAAA	-21	NA	55770817	55780224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_55771070_55772523_55772985_55776389_55776456_55779621
transcript_145.known	SIRV5	-	229	1	FSM	SIRV5B	SIRV512	229	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACATGTTAGACCTTTA	NA	False	NA	NA	False	AATATA	-23	NA	2406	2177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV5_-_2200_2400
transcript_14502.known	chr13	+	5676	23	FSM	ENSMUSG00000021500.18	ENSMUST00000172272.8	5676	23	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_19	81.8265778520354	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTCTCAGATTATCTTT	NA	False	NA	8	True	AATAAA	-15	NA	55782839	55829069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_55783009_55785838_55786028_55787603_55787748_55793183_55793281_55795439_55795606_55798227_55798380_55799856_55799971_55800725_55800892_55801414_55801536_55801816_55801993_55802821_55802944_55806832_55806912_55808529_55808613_55811031_55811197_55811591_55811755_55813999_55814194_55817524_55817663_55818016_55818167_55821753_55821931_55823708_55823928_55824582_55824728_55825333_55825408_55826596
transcript_14505.nic	chr13	+	652	5	ISM	ENSMUSG00000021500.18	ENSMUST00000224551.2	4056	16	-20	22190	-19	-22190	5prime_fragment	FALSE	canonical	3	304	junction_4	29.0903764155777	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAACGGAAAGAAAGAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	55782820	55795473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_+_55783009_55785838_55786028_55787603_55787748_55793183_55793281_55795439
transcript_14506.known	chr13	+	1527	5	FSM	ENSMUSG00000021497.11	ENSMUST00000021959.11	1527	5	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_2	13.4257215820976	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAAAGTGGTTTCGCTTGT	NA	False	NA	18	True	AATAAA	-14	NA	55862462	55874040	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_55862658_55865604_55866081_55869391_55869556_55872320_55872452_55873479
transcript_14510.known	chr13	+	546	4	FSM	ENSMUSG00000021496.13	ENSMUST00000124968.8	546	4	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_3	31.7210060089875	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGTTATTTGTCATTA	NA	False	NA	15	True	AATACA	-18	NA	55875180	55924643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_55875288_55880748_55880881_55923179_55923261_55924417
transcript_14511.nnic	chr13	+	329	3	NNC	ENSMUSG00000021496.13	novel	544	4	NA	NA	15	-36268	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_2	178.5	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTCATTGACACAAATTTCA	NA	False	NA	12	True	ATTAAA	-18	NA	55875195	55888373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_55875288_55880748_55880881_55888268
transcript_14512.known	chr13	-	2046	9	FSM	ENSMUSG00000015937.16	ENSMUST00000016081.13	2046	9	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_5	233.718279933342	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCCGTGTTTTGTGTTAC	5905	False	NA	-5	True	AGTAAA	-18	NA	56283444	56221431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244048_56252114_56252313_56252701_56252809_56276089_56276295_56283158
transcript_14513.nnic	chr13	-	1876	9	NNC	ENSMUSG00000015937.16	novel	2046	9	NA	NA	-116	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	413.689799245763	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGACTGGCCGTGTTTTGTGT	5789	False	NA	-8	True	AGTAAA	-15	NA	56283560	56221434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_56222206_56230932_56231108_56232008_56232099_56237570_56237671_56243936_56244045_56252114_56252313_56252701_56252809_56276089_56276295_56283438
transcript_14514.known	chr13	-	2718	3	FSM	ENSMUSG00000049625.7	ENSMUST00000225063.2	2718	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCGTGCCATCAGCTTGC	NA	False	NA	NA	False	AATAAA	-15	NA	56326698	56322295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_56324447_56324717_56324946_56326359
transcript_14515.known	chr13	-	1827	4	FSM	ENSMUSG00000021508.12	ENSMUST00000021970.11	1827	4	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	5.8878405775519	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTACTCCTGGGCTGTT	NA	False	NA	2	True	AATAAA	-22	NA	56444364	56436455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_56437621_56440273_56440388_56443638_56443745_56443922
transcript_14517.nnic	chr13	+	1848	8	NNC	ENSMUSG00000021509.6	novel	3374	8	NA	NA	-36	-2340	at_least_one_novel_splicesite	FALSE	canonical	2	13	junction_7	4.23300925429402	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACAAAATCAATGTGTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	56586131	56619712	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_56586349_56590601_56590646_56596810_56596883_56598833_56599093_56611315_56611559_56612767_56612902_56618162_56618294_56618964
transcript_14518.known	chr13	+	3507	4	FSM	ENSMUSG00000035509.18	ENSMUST00000124981.2	3507	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	0.816496580927726	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	56670325	56677899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_56670436_56671322_56671417_56673454_56673586_56674727
transcript_14519.known	chr13	+	798	3	FSM	ENSMUSG00000035509.18	ENSMUST00000121095.8	798	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTTTCTCACTGGGCTG	NA	False	NA	NA	False	AATAAA	-26	NA	56670284	56675280	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_56670436_56671322_56671417_56674727
transcript_14520.known	chr13	+	2714	17	FSM	ENSMUSG00000035493.11	ENSMUST00000045173.10	2714	17	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	6.48917367620871	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTGCTAGCTGCGTG	9425	False	NA	NA	False	AATAAA	-16	NA	56757398	56787171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_56757594_56762052_56762152_56771372_56771438_56773012_56773174_56773462_56773628_56773846_56773994_56775726_56775869_56777430_56777644_56778356_56778495_56779042_56779189_56779862_56780000_56780671_56780803_56783378_56783504_56784378_56784482_56784950_56785031_56785833_56785859_56786529
transcript_14521.known	chr13	+	6584	7	FSM	ENSMUSG00000021540.17	ENSMUST00000069557.14	6584	7	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	16.5495887830752	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTCTTTGTTTATTTTC	NA	False	NA	13	True	AATAAA	-17	NA	56850822	56890190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_56850945_56871241_56871810_56875216_56875469_56876322_56876443_56880662_56880885_56883612_56883870_56885147
transcript_14522.known	chr13	+	1398	5	FSM	ENSMUSG00000021540.17	ENSMUST00000138677.8	1398	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	17.4696164811939	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAACTAGTCTTCTCTTT	NA	False	NA	NA	False	AATAAA	-2	NA	56850851	56881027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_56850945_56871241_56871810_56875216_56875469_56876322_56876443_56880662
transcript_14525.known	chr13	+	764	5	FSM	ENSMUSG00000050002.15	ENSMUST00000051490.15	764	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	87.5928079239386	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATCGGGCTGTACTGTAAA	NA	False	NA	2	True	NA	NA	NA	58305462	58311760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_58305551_58307690_58307722_58307965_58308053_58310651_58310696_58311246
transcript_14526.known	chr13	+	1462	4	FSM	ENSMUSG00000050002.15	ENSMUST00000109868.4	1462	4	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	23.6220236220354	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTGTCTTTATACTTTA	NA	False	NA	NA	False	NA	NA	NA	58305467	58312507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_58305551_58307690_58307722_58307965_58308053_58311246
transcript_14527.nnic	chr13	+	722	4	NNC	ENSMUSG00000050002.15	novel	1462	4	NA	NA	-18	3	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	84.6968450153579	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGGGCTGTACTGTAAATTC	NA	False	NA	5	True	NA	NA	NA	58305444	58311763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_58305551_58307690_58307722_58307965_58308053_58311265
transcript_14529.known	chr13	-	3686	11	FSM	ENSMUSG00000005312.16	ENSMUST00000058735.12	3686	11	0	0	0	0	multi-exon	FALSE	canonical	3	817	junction_3	227.671803260746	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTCGCCTCTTTTGTA	1727	False	NA	-2	True	AATAAA	-20	NA	58363467	58323969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_58325843_58327041_58327208_58327366_58327483_58328635_58328720_58330995_58331139_58339535_58339780_58339890_58340050_58341065_58341329_58344370_58344487_58346732_58346885_58363097
transcript_14531.known	chr13	-	3561	10	FSM	ENSMUSG00000005312.16	ENSMUST00000076454.8	3561	10	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_3	294.557588324433	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTTGGTTGTCTCGCCTC	1761	False	NA	-9	True	AATAAA	-13	NA	58363433	58323976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_58325843_58327041_58327208_58327366_58327483_58330995_58331139_58339535_58339780_58339890_58340050_58341065_58341329_58344370_58344487_58346732_58346885_58363097
transcript_14532.known	chr13	-	1523	12	FSM	ENSMUSG00000021552.8	ENSMUST00000091579.6	1523	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	54.7743681383791	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTGATCTTCACTGTC	NA	False	NA	2	True	AATAAA	-22	NA	58422002	58381159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_58381473_58384330_58384409_58384800_58384872_58386462_58386527_58389467_58389570_58391615_58391769_58398944_58398968_58403560_58403685_58407247_58407326_58411011_58411156_58411755_58412014_58421887
transcript_14533.nic	chr13	-	1636	12	NIC	ENSMUSG00000021552.8	novel	1523	12	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	64.7313584001647	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTGATCTTCACTGTC	NA	False	NA	2	True	AATAAA	-22	NA	58422693	58381159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_58381473_58384330_58384409_58384800_58384872_58386462_58386527_58389467_58389570_58391615_58391769_58398944_58398968_58403560_58403685_58407247_58407326_58411011_58411156_58411755_58412014_58422465
transcript_14535.known	chr13	-	3051	4	FSM	ENSMUSG00000021550.7	ENSMUST00000022032.7	3051	4	0	0	0	0	multi-exon	TRUE	canonical	3	402	junction_2	21.2289111041209	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGGCTAGATTTTGATAC	NA	False	NA	NA	False	NA	NA	NA	58533039	58527630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_58529824_58530221_58530418_58531963_58532224_58532637
transcript_14538.known	chr13	-	2970	18	FSM	ENSMUSG00000021546.19	ENSMUST00000116403.9	2970	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	2601.31267501967	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGTTTTGTGTGTGTGTG	3924	False	NA	-8	True	AATACA	-15	NA	58551157	58538955	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877_58549932_58550206_58550327_58551084
transcript_14540.known	chr13	-	2676	16	FSM	ENSMUSG00000021546.19	ENSMUST00000043269.14	2676	16	0	0	0	0	multi-exon	FALSE	canonical	3	4513	junction_1	1087.93485507584	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	4765	False	NA	-23	True	AATAAA	-15	NA	58550316	58539052	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
transcript_14547.known	chr13	-	2754	16	FSM	ENSMUSG00000021546.19	ENSMUST00000224182.2	2754	16	0	0	0	0	multi-exon	FALSE	canonical	3	4568	junction_3	976.692573035253	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACGTGTGCCCAATTTGA	4751	False	NA	-19	True	AATAAA	-19	NA	58550330	58539048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
transcript_14568.known	chr13	-	2653	15	FSM	ENSMUSG00000021546.19	ENSMUST00000176207.8	2653	15	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_9	1988.3049647006	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAATGGAAAAAGTTCC	4618	False	NA	-121	True	NA	NA	NA	58550463	58539150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_58540231_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
transcript_1457.known	chr1	-	2833	14	FSM	ENSMUSG00000026209.16	ENSMUST00000185419.7	2833	14	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_13	192.021017094268	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAACCATTGTGTGTAT	NA	False	NA	NA	False	NA	NA	NA	75293637	75284583	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353_75293448_75293534
transcript_14575.known	chr13	-	2626	15	FSM	ENSMUSG00000021546.19	ENSMUST00000177019.8	2626	15	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_9	1943.30427759168	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	4803	False	NA	-23	True	AATAAA	-15	NA	58550278	58539052	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58550206
transcript_14592.known	chr13	+	2447	4	FSM	ENSMUSG00000035367.10	ENSMUST00000225815.2	2447	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	162.181653983701	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATATGTGAAAGAATGTT	NA	False	NA	16	True	AATAAA	-29	NA	58550513	58557906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_58550604_58552384_58552470_58554815_58554905_58555723
transcript_14593.known	chr13	+	3594	3	FSM	ENSMUSG00000035367.10	ENSMUST00000225828.2	3594	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	177.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCCGTGGTCATGG	NA	False	NA	5	True	NA	NA	NA	58550061	58558958	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_58550332_58554815_58554905_58555723
transcript_14594.known	chr13	+	3855	3	FSM	ENSMUSG00000035367.10	ENSMUST00000042450.10	3855	3	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	108.5	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCGTGGTCATGGTGTC	NA	False	NA	9	True	NA	NA	NA	58550076	58558962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_58550604_58554815_58554905_58555723
transcript_14595.known	chr13	-	2704	16	FSM	ENSMUSG00000021546.19	ENSMUST00000225674.2	2704	16	0	0	0	0	multi-exon	FALSE	canonical	3	1429	junction_15	1661.36162897252	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGACGTGTGCCCAAT	5126	False	NA	-23	True	AATAAA	-15	NA	58549955	58539052	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_58540291_58541009_58541180_58541505_58541589_58541666_58541683_58541889_58541974_58542123_58542179_58542291_58542600_58542978_58543108_58543387_58543502_58544001_58544074_58544640_58544714_58545566_58545611_58546969_58547027_58547706_58547805_58548146_58548232_58549877
transcript_14598.nnic	chr13	-	788	3	Antisense	novelGene_ENSMUSG00000055254.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	1	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CGGTGCACAATTTAAAAAAA	NA	False	NA	NA	False	ATTAAA	-2	NA	59059836	59056455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr13_-_59056897_59058134_59058376_59059730
transcript_146.known	SIRV5	+	2473	1	FSM	SIRV5A	SIRV504	2473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	226	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCATGTAAAACATTTGTT	NA	False	NA	NA	False	NA	NA	NA	11133	13606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV5_+_11100_13600
transcript_14608.known	chr13	-	2879	18	FSM	ENSMUSG00000021557.16	ENSMUST00000109830.9	2879	18	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	6.94416685335233	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTATTTGACTTTATGCA	1080	False	NA	NA	False	ATTAAA	-19	NA	59705100	59641213	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_59641685_59643146_59643296_59643376_59643464_59644789_59644874_59647827_59648517_59652007_59652125_59655772_59655871_59660137_59660316_59661900_59662110_59665466_59665505_59672959_59673054_59676200_59676333_59678870_59679018_59679826_59679891_59680985_59681054_59684062_59684188_59692200_59692266_59705036
transcript_1461.known	chr1	-	1862	14	FSM	ENSMUSG00000026209.16	ENSMUST00000187836.7	1862	14	0	0	0	0	multi-exon	FALSE	canonical	3	848	junction_13	52.2384156632446	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTCTGTGCTTTTTCTGA	NA	False	NA	-1	True	ATTAAA	-17	NA	75293793	75285208	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_75285354_75285942_75286111_75288435_75288538_75288635_75288676_75289048_75289210_75290069_75290154_75291007_75291086_75291773_75291882_75291988_75292065_75292262_75292394_75292588_75292715_75292973_75293088_75293184_75293274_75293353
transcript_14614.known	chr13	+	3793	23	FSM	ENSMUSG00000021555.16	ENSMUST00000022038.15	3793	23	0	0	0	0	multi-exon	FALSE	canonical	3	649	junction_6	70.4314478267713	288	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTAGGAGCAGAAAAGGTG	1210	False	NA	NA	False	AATACA	-20	NA	59733108	59783736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_59733274_59733966_59734096_59743162_59743197_59745853_59745969_59747542_59747618_59748717_59748886_59755059_59755127_59755201_59755246_59755958_59756010_59756574_59756659_59757292_59757408_59760450_59760630_59764557_59764618_59765733_59765841_59770679_59770747_59772318_59772418_59773232_59773412_59775691_59775829_59776731_59776800_59777813_59777955_59778394_59778518_59780761_59780843_59782231
transcript_1462.nic	chr1	+	1638	8	ISM	ENSMUSG00000026208.10	ENSMUST00000027409.10	3028	9	1692	863	-9	-863	3prime_fragment	FALSE	canonical	3	24	junction_7	3.01695886884898	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCATGGCCCTGTCATCT	NA	False	NA	4	True	AATAAA	-15	NA	75338664	75344360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_75338863_75338956_75339053_75339208_75339371_75339537_75339664_75340114_75340336_75341971_75342016_75343403_75343487_75343652
transcript_1463.known	chr1	+	1692	14	FSM	ENSMUSG00000033021.17	ENSMUST00000113584.8	1692	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	88.7478310427522	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCAGCTTGGACTCCTAC	NA	False	NA	12	True	AATAAA	-16	NA	75412586	75419817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_75412656_75412789_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
transcript_14645.known	chr13	-	3954	10	FSM	ENSMUSG00000021556.13	ENSMUST00000022039.7	3954	10	0	0	0	0	multi-exon	TRUE	canonical	3	421	junction_9	46.3947102135844	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTCATCCTCTCTAGGT	NA	False	NA	NA	False	AATAAA	-16	NA	59823625	59782439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_59785216_59786118_59786227_59787933_59788156_59790056_59790202_59792906_59793037_59797376_59797480_59798509_59798565_59812011_59812192_59813340_59813491_59823540
transcript_1466.known	chr1	+	1539	13	FSM	ENSMUSG00000033021.17	ENSMUST00000037796.14	1539	13	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	48.5514475124641	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGCTTGGACTCCTACT	NA	False	NA	13	True	AATAAA	-17	NA	75412573	75419818	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_75412656_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
transcript_14663.nnic	chr13	-	660	3	NNC	ENSMUSG00000050876.10	novel	5325	5	NA	NA	-445	-1857	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6.5	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTATTTGTATCAGTTT	NA	False	NA	NA	False	AATATA	-14	NA	59858589	59854420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_59854706_59858067_59858145_59858291
transcript_14664.known	chr13	-	1942	4	FSM	ENSMUSG00000044792.8	ENSMUST00000057115.7	1942	4	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_3	1.63299316185545	224	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTCCTTTTCTTGTTGG	NA	False	NA	3	True	ATTAAA	-23	NA	59917624	59903222	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_59904818_59906703_59906810_59910555_59910610_59917437
transcript_14665.known	chr13	+	4862	2	FSM	ENSMUSG00000089875.3	ENSMUST00000162450.3	4862	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCGGGACTGGAGCTCCT	NA	False	NA	NA	False	NA	NA	NA	59917779	59923221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_59918161_59918740
transcript_14669.known	chr13	-	511	3	FSM	ENSMUSG00000114490.2	ENSMUST00000223864.2	511	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCCCCTCCCCAGCATCT	NA	False	NA	NA	False	NA	NA	NA	60054933	60049046	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_60049162_60050262_60050433_60054707
transcript_14670.nnic	chr13	+	668	3	NNC	ENSMUSG00000113626.2	novel	353	2	NA	NA	24	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTCCTGAGAGAATAAGCC	NA	False	NA	NA	False	NA	NA	NA	61952103	61974330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_61952356_61963139_61963348_61974122
transcript_14671.known	chr13	+	353	2	FSM	ENSMUSG00000113626.2	ENSMUST00000221961.2	353	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATCCTCCTGAGAGAATA	NA	False	NA	NA	False	NA	NA	NA	61952070	61974326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_61952220_61974122
transcript_14686.nnic	chr13	+	1321	4	NNC	ENSMUSG00000113566.2	novel	478	4	NA	NA	-118737	289	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_1	214.715832878921	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCCTTGGTAATGGTGTC	1130	False	NA	7	True	NA	NA	NA	62126824	62260150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_62126970_62254561_62254689_62254881_62254943_62259162
transcript_14688.known	chr13	+	886	4	FSM	ENSMUSG00000113566.2	ENSMUST00000222324.2	886	4	0	0	0	0	multi-exon	FALSE	canonical	3	481	junction_1	27.9801516952444	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTATGTGTGAAAGCCTG	NA	False	NA	-66	True	NA	NA	NA	62245583	62259791	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_62245653_62254561_62254689_62254881_62254943_62259162
transcript_1469.nic	chr1	+	1815	13	NIC	ENSMUSG00000033021.17	novel	1692	14	NA	NA	-6	0	intron_retention	FALSE	canonical	3	82	junction_1	58.385869199852	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGCTTGGACTCCTACT	NA	False	NA	13	True	AATAAA	-17	NA	75412598	75419818	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_75412957_75413421_75413483_75413580_75413679_75414894_75414999_75415485_75415673_75415988_75416049_75417055_75417187_75418118_75418254_75418373_75418472_75418628_75418676_75418828_75418922_75419087_75419257_75419544
transcript_14690.known	chr13	+	452	3	FSM	ENSMUSG00000113081.2	ENSMUST00000221637.2	452	3	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_2	20.5	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATTGCAGGTATCTGAA	NA	False	NA	13	True	NA	NA	NA	62411379	62421101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_62411510_62420579_62420707_62420906
transcript_14692.nnic	chr13	-	2539	6	Fusion	ENSMUSG00000113623.2_ENSMUSG00000094942.8	novel	2310	4	NA	NA	-33	0	multi-exon	FALSE	canonical	2	10	junction_3	56.1070405564221	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGATCAGTCG	NA	False	NA	-12	True	NA	NA	NA	62564890	62516141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr13_-_62518166_62519376_62519438_62519623_62519751_62555228_62555290_62555482_62555610_62564751
transcript_14693.known	chr13	-	2310	4	FSM	ENSMUSG00000094942.8	ENSMUST00000187656.7	2310	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	23.1708629293104	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGATCAGTCG	NA	False	NA	-12	True	NA	NA	NA	62530991	62516141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_62518166_62519376_62519438_62519623_62519751_62530893
transcript_14694.nnic	chr13	-	2299	4	Fusion	ENSMUSG00000094942.8_ENSMUSG00000113450.2	novel	2310	4	NA	NA	0	0	multi-exon	FALSE	canonical	3	23	junction_1	26.1661358757205	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGATCAGTCG	9551	False	NA	-12	True	NA	NA	NA	62614607	62516141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr13_-_62518166_62519376_62519438_62519623_62519751_62614520
transcript_14696.known	chr13	-	2492	4	FSM	ENSMUSG00000113450.2	ENSMUST00000221747.2	2492	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	11.5566238822398	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAAAGAAGAGGTG	9512	False	NA	NA	False	NA	NA	NA	62614646	62600829	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_62603008_62604500_62604562_62604746_62604874_62614520
transcript_14698.known	chr13	-	677	5	FSM	ENSMUSG00000074865.12	ENSMUST00000222852.2	677	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_4	28.9006920332369	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAGTACATAAAAGAACACA	NA	False	NA	NA	False	NA	NA	NA	62706409	62666375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_62666545_62667985_62668047_62668231_62668359_62670268_62670480_62706300
transcript_147.known	SIRV5	+	526	3	FSM	SIRV5A	SIRV503	526	3	0	0	0	0	multi-exon	FALSE	canonical	3	1532	junction_2	5146.5	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTCGCTTGCCCAATTG	NA	False	NA	NA	False	NA	NA	NA	8201	11142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV5_+_8586_10858_10992_11133
transcript_14700.nnic	chr13	-	2237	5	NNC	ENSMUSG00000074865.12	novel	2439	5	NA	NA	-81977	0	intron_retention	FALSE	canonical	0	0	junction_4	30.9303653389351	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGTGTGTGGACCAGT	NA	False	NA	NA	False	NA	NA	NA	62800990	62664610	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_62666545_62667985_62668047_62668231_62668359_62699112_62699154_62800916
transcript_14704.nnic	chr13	-	2137	4	NNC	ENSMUSG00000074865.12	novel	2206	3	NA	NA	-81977	0	intron_retention	TRUE	non_canonical	0	0	junction_3	15.9234278833282	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGTGTGGACCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62800990	62664608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_62666545_62668231_62668359_62706300_62706310_62800925
transcript_14705.nnic	chr13	-	2196	4	NNC	ENSMUSG00000074865.12	novel	2147	4	NA	NA	-81977	0	intron_retention	FALSE	canonical	3	28	junction_3	21.3124898175277	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGTGTGTGGACCAGT	NA	False	NA	NA	False	NA	NA	NA	62800990	62664610	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_62666545_62667985_62668047_62668231_62668359_62800916
transcript_14707.known	chr13	-	2206	3	FSM	ENSMUSG00000074865.12	ENSMUST00000222746.2	2206	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	2.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGTGTGGACCAGTCA	NA	False	NA	NA	False	NA	NA	NA	62706443	62664608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_62666545_62668231_62668359_62706300
transcript_14708.known	chr13	-	1653	4	FSM	ENSMUSG00000074865.12	ENSMUST00000222429.2	1653	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	51.4220013439989	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTGCATATTTGTGTGT	NA	False	NA	-8	True	ATTAAA	-40	NA	62706421	62634459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_62635805_62640180_62640241_62640621_62640749_62706300
transcript_14710.nnic	chr13	-	2238	5	NNC	ENSMUSG00000072066.8	novel	1457	4	NA	NA	-20	-601	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	7.79422863405995	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGTGTGGACCAGTCG	NA	False	NA	-21	True	NA	NA	NA	62772016	62751427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_62753195_62754939_62755001_62755186_62755314_62770760_62770879_62771851
transcript_14711.known	chr13	-	1457	4	FSM	ENSMUSG00000072066.8	ENSMUST00000223338.2	1457	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	3.74165738677394	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTTCAAATGTAAGGAATG	NA	False	NA	NA	False	NA	NA	NA	62771994	62752068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_62753195_62754939_62755001_62755186_62755314_62771851
transcript_14716.nnic	chr13	-	2727	7	NIC	ENSMUSG00000074863.6	novel	1765	7	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_3	82.6043111600249	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGTTCCTGGGAAAAAAC	6795	False	NA	1	True	AATAAA	-20	NA	62860580	62819597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_62821755_62823062_62823124_62823332_62823469_62853514_62853576_62853943_62854071_62855967_62856024_62860451
transcript_14719.nnic	chr13	-	2633	7	NNC	ENSMUSG00000074863.6	novel	1171	7	NA	NA	-13	387	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	95.1690017226665	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTGTCTAGGCATGTA	6795	False	NA	0	True	AATAAA	-18	NA	62860580	62846832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_62848493_62848576_62849126_62849254_62849306_62853514_62853576_62853943_62854071_62855967_62856024_62860451
transcript_14720.nnic	chr13	-	2247	7	NNC	ENSMUSG00000074863.6	novel	1171	7	NA	NA	-13	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	95.1690017226665	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTATGGGTGCATATTTG	6795	False	NA	-3	True	ATTAAA	-18	NA	62860580	62847218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_62848445_62848528_62849126_62849254_62849306_62853514_62853576_62853943_62854071_62855967_62856024_62860451
transcript_14725.nic	chr13	-	2680	6	NIC	ENSMUSG00000074863.6	novel	559	6	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_3	87.9377052236411	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGTTCCTGGGAAAAAAC	6786	False	NA	1	True	AATAAA	-20	NA	62860589	62819597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_62821755_62823062_62823124_62823332_62823469_62853514_62853576_62853943_62854071_62860451
transcript_14726.nnic	chr13	-	2586	6	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-22	387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	110.897430087446	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTGTCTAGGCATGTA	6786	False	NA	0	True	AATAAA	-18	NA	62860589	62846832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_62848493_62848576_62849126_62849254_62849306_62853514_62853576_62853943_62854071_62860451
transcript_14728.nnic	chr13	-	2582	6	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-13	387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	104.251618692469	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTGTCTAGGCATGTA	6795	False	NA	0	True	AATAAA	-18	NA	62860580	62846832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_62848493_62848576_62849126_62853514_62853576_62853943_62854071_62855967_62856024_62860451
transcript_14729.nnic	chr13	-	2200	6	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-22	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	110.897430087446	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTATGGGTGCATATTTG	6786	False	NA	-3	True	ATTAAA	-18	NA	62860589	62847218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_62848445_62848528_62849126_62849254_62849306_62853514_62853576_62853943_62854071_62860451
transcript_14731.nnic	chr13	-	2196	6	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-13	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	104.251618692469	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTATGGGTGCATATTTG	6795	False	NA	-3	True	ATTAAA	-18	NA	62860580	62847218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_62848445_62848528_62849126_62853514_62853576_62853943_62854071_62855967_62856024_62860451
transcript_14733.nnic	chr13	-	2156	6	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-13	-39	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	104.251618692469	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTCATTTTAAGTCCATT	6795	False	NA	-43	True	TTTAAA	-6	NA	62860580	62847258	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_62848493_62848576_62849126_62853514_62853576_62853943_62854071_62855967_62856024_62860451
transcript_14735.nnic	chr13	-	2535	5	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-22	387	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	123.408620039283	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTGTCTAGGCATGTA	6786	False	NA	0	True	AATAAA	-18	NA	62860589	62846832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_62848493_62848576_62849126_62853514_62853576_62853943_62854071_62860451
transcript_14736.nnic	chr13	-	2149	5	NNC	ENSMUSG00000074863.6	novel	2509	5	NA	NA	-22	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	123.408620039283	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACTATGGGTGCATATTTG	6786	False	NA	-3	True	ATTAAA	-18	NA	62860589	62847218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_62848445_62848528_62849126_62853514_62853576_62853943_62854071_62860451
transcript_14739.known	chr13	-	615	4	FSM	ENSMUSG00000074863.6	ENSMUST00000221999.2	615	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	44.0176732183285	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCTACAACCTAAAGGAAGA	NA	False	NA	NA	False	NA	NA	NA	62832732	62821422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_62821755_62823062_62823124_62823332_62823469_62832646
transcript_14740.known	chr13	-	1354	7	FSM	ENSMUSG00000021456.9	ENSMUST00000021907.9	1354	7	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_2	7.5	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTTATGGGTCTTCTG	NA	False	NA	2	True	AATAAA	-20	NA	63006236	62984690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_62985095_62988084_62988205_62989599_62989738_62997190_62997332_63001787_63001881_63002717_63002881_63005941
transcript_14743.known	chr13	-	1479	7	FSM	ENSMUSG00000069805.11	ENSMUST00000092888.11	1479	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	4.93288286231625	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTCTTTAGTGCGTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	63036096	63012566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_63012982_63015152_63015273_63016795_63016934_63018979_63019121_63020503_63020597_63022962_63023126_63035687
transcript_14746.known	chr13	+	1055	6	FSM	ENSMUSG00000021458.18	ENSMUST00000222929.2	1055	6	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	29.9933325924279	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCCAGTTTGCTTCTGAA	NA	False	NA	3	True	AATAAA	-17	NA	63387842	63450096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_63387970_63388070_63388146_63429955_63430073_63444671_63444759_63446525_63446671_63449592
transcript_14748.nic	chr13	+	1345	6	NIC	ENSMUSG00000021458.18	novel	918	5	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_1	55.3591907455302	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGTTTGCTTCTGAATT	NA	False	NA	5	True	AATAAA	-19	NA	63420612	63450098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_63420920_63421039_63421223_63429955_63430073_63444671_63444759_63446525_63446671_63449592
transcript_14750.nic	chr13	+	1405	5	ISM	ENSMUSG00000021458.18	ENSMUST00000220884.2	772	7	-117	1560	-38	0	5prime_fragment	FALSE	canonical	3	67	junction_1	29.0387671914632	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGTAATGTTTATTT	NA	False	NA	NA	False	ATTAAA	-35	NA	63387804	63447486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_+_63387970_63388070_63388146_63429955_63430073_63444671_63444759_63446525
transcript_14752.nnic	chr13	+	1853	5	NNC	ENSMUSG00000021458.18	novel	587	3	NA	NA	285	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	53.9600546700983	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTCTGGCCTTGCTTAGA	NA	False	NA	32	True	AATAAA	-32	NA	63388206	63450691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_63388612_63429955_63430073_63444671_63444759_63446525_63446671_63449592
transcript_14755.nnic	chr13	+	903	5	NNC	ENSMUSG00000021458.18	novel	587	3	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	51.3681564785033	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGTTTGCTTCTGAATT	NA	False	NA	5	True	AATAAA	-19	NA	63420575	63450098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_63420624_63429955_63430073_63444671_63444759_63446525_63446671_63449592
transcript_14757.nnic	chr13	+	957	5	NNC	ENSMUSG00000021458.18	novel	1754	4	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	55.2562213691816	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGTTTGCTTCTGAATT	NA	False	NA	5	True	AATAAA	-19	NA	63420612	63450098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_63420715_63429955_63430073_63444671_63444759_63446525_63446671_63449592
transcript_14759.nic	chr13	+	1406	5	ISM	ENSMUSG00000021458.18	ENSMUST00000220885.2	894	6	298	-241	-17	0	3prime_fragment	FALSE	canonical	3	17	junction_1	48.7769156466458	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCAGTTTGCTTCTGAATT	NA	False	NA	5	True	AATAAA	-19	NA	63420612	63450098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_+_63421164_63429955_63430073_63444671_63444759_63446525_63446671_63449592
transcript_14760.nic	chr13	+	1999	5	ISM	ENSMUSG00000021458.18	ENSMUST00000220885.2	894	6	298	-834	-17	0	3prime_fragment	FALSE	canonical	3	17	junction_1	48.7769156466458	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTCTGGCCTTGCTTAGA	NA	False	NA	32	True	AATAAA	-32	NA	63420612	63450691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_+_63421164_63429955_63430073_63444671_63444759_63446525_63446671_63449592
transcript_14761.known	chr13	+	918	5	FSM	ENSMUSG00000021458.18	ENSMUST00000223007.2	918	5	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_1	45.3231453012696	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGATGTGTTCAGTCAACA	NA	False	NA	-83	True	NA	NA	NA	63421071	63450010	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_63421223_63429955_63430073_63444671_63444759_63446525_63446671_63449592
transcript_14763.known	chr13	+	688	4	FSM	ENSMUSG00000021458.18	ENSMUST00000220670.2	688	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	6.12825877028341	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGTTAGTCTCACTGTT	NA	False	NA	NA	False	AATAAA	-14	NA	63420631	63442985	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_63420920_63421039_63421164_63429955_63430073_63442826
transcript_14765.known	chr13	+	459	3	FSM	ENSMUSG00000021458.18	ENSMUST00000221164.2	459	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	11.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGTAGTTAGTCTCACT	NA	False	NA	NA	False	AATAAA	-11	NA	63421036	63442982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_63421223_63429955_63430073_63442826
transcript_14769.known	chr13	-	3111	15	FSM	ENSMUSG00000021461.18	ENSMUST00000161977.8	3111	15	0	0	0	0	multi-exon	TRUE	canonical	3	59	junction_14	18.8014599954148	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAAGTTGCTGAGTTGC	NA	False	NA	NA	False	NA	NA	NA	63579538	63459352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_63460618_63465166_63465371_63469680_63469859_63471221_63471304_63473364_63473441_63478334_63478435_63479654_63479708_63488132_63488290_63495233_63495399_63508009_63508075_63509392_63509507_63545896_63545992_63548047_63548133_63550655_63550853_63579263
transcript_14773.known	chr13	-	641	1	FSM	ENSMUSG00000113340.2	ENSMUST00000220900.2	641	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGGACGCTCCAATAAACC	NA	False	NA	NA	False	NA	NA	NA	64094335	64093694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_64093700_64094300
transcript_14774.known	chr13	-	1286	11	FSM	ENSMUSG00000033122.15	ENSMUST00000166224.8	1286	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	1.32664991614216	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAGAAACTGCTGTGCC	NA	False	NA	NA	False	AATAAA	-6	NA	64237015	64206087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_64206494_64207232_64207380_64210693_64210760_64210901_64210984_64212162_64212198_64216097_64216134_64219797_64219866_64221650_64221759_64224161_64224238_64234984_64235032_64236800
transcript_14775.known	chr13	-	2303	12	FSM	ENSMUSG00000033114.12	ENSMUST00000099441.6	2303	12	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_8	14.1169846708972	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTTATGGTTTTTGGTT	NA	False	NA	-1	True	NA	NA	NA	64277169	64244121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64270132_64270167_64276999
transcript_14777.known	chr13	-	983	11	FSM	ENSMUSG00000033114.12	ENSMUST00000222794.2	983	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_10	34.3745545425683	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCTAGGCTGGAAAGAGCA	NA	False	NA	NA	False	AAGAAA	-45	NA	64277139	64245377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64276999
transcript_14778.nic	chr13	-	1418	11	NIC	ENSMUSG00000033114.12	novel	1542	13	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_8	31.255239560752	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAGTGTGATATTACAGT	NA	False	NA	NA	False	AATAAA	-19	NA	64277185	64244954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64268408_64268496_64270132_64270167_64276999
transcript_14780.nnic	chr13	-	1418	11	NIC	ENSMUSG00000033114.12	novel	1542	13	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	1	5	junction_3	31.977492084277	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCACAGTGTGATATTACAGT	NA	False	NA	NA	False	AATAAA	-19	NA	64277185	64244954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_64245499_64246128_64246212_64247083_64247163_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64270132_64270167_64276999
transcript_14781.known	chr13	-	917	11	FSM	ENSMUSG00000033114.12	ENSMUST00000220792.2	917	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	32.1846236578898	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGCCTAGGCTGGAAAGA	NA	False	NA	NA	False	AAGAAA	-42	NA	64277125	64245380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_64245499_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64266229_64266298_64268408_64268496_64270132_64270167_64276999
transcript_14782.nic	chr13	-	2127	9	NIC	ENSMUSG00000033114.12	novel	2303	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_8	35.5773804544404	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTTATGGTTTTTGGTT	NA	False	NA	-1	True	NA	NA	NA	64277182	64244121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_64245499_64246128_64246212_64247083_64247163_64252546_64252615_64254828_64254922_64256138_64256242_64259329_64259399_64260743_64260816_64276999
transcript_14785.known	chr13	-	3532	5	FSM	ENSMUSG00000044934.14	ENSMUST00000059817.12	3532	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	7.32717544487642	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACATGGGTCATTCTTACA	6050	False	NA	NA	False	AATAAA	-26	NA	64301016	64280831	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_64283351_64290021_64290161_64291968_64292089_64293343_64293495_64300413
transcript_14786.known	chr13	+	2564	8	FSM	ENSMUSG00000021476.10	ENSMUST00000021929.10	2564	8	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_6	9.99183340002612	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGCCTTATTCATTTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	64309682	64334351	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_64310149_64317827_64317991_64321876_64322036_64322603_64322673_64323818_64323903_64329920_64330093_64332386_64332573_64333086
transcript_14790.known	chr13	-	2886	14	FSM	ENSMUSG00000033102.16	ENSMUST00000109769.10	2886	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	22.3145877936915	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	64396456	64343171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_64344490_64353084_64353232_64356920_64357019_64357739_64357900_64358008_64358148_64363313_64363545_64364025_64364114_64367699_64367763_64368493_64368561_64373385_64373463_64391447_64391541_64394338_64394415_64395041_64395133_64396218
transcript_14791.known	chr13	-	3011	6	FSM	ENSMUSG00000021482.11	ENSMUST00000222570.2	3011	6	0	0	0	0	multi-exon	TRUE	canonical	3	150	junction_1	21.3672646822189	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGTTTGTTCTGGGTTC	NA	False	NA	0	True	ATTAAA	-17	NA	64460524	64437610	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_64440043_64445068_64445201_64456635_64456742_64456906_64456961_64460080_64460150_64460306
transcript_14795.nnic	chr13	-	1681	3	NNC	ENSMUSG00000033102.16	novel	628	5	NA	NA	331	-6	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	8	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGACAGAGCCCATAA	NA	False	NA	NA	False	NA	NA	NA	64345407	64343156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_64344490_64344793_64344860_64345125
transcript_148.known	SIRV5	+	885	4	FSM	SIRV5A	SIRV509	885	4	0	0	0	0	multi-exon	FALSE	canonical	3	1024	junction_3	4608.45413946538	816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATAGTAACCTTGGTAAC	NA	False	NA	NA	False	AGTAAA	-10	NA	8315	11866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV5_+_8382_8454_8586_10858_10992_11311
transcript_14801.known	chr13	-	1971	8	FSM	ENSMUSG00000021477.10	ENSMUST00000021933.8	1971	8	0	0	0	0	multi-exon	FALSE	canonical	3	1187	junction_3	95.3616103822386	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCAAGTCTCATATCTG	NA	False	NA	NA	False	NA	NA	NA	64518120	64511027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_64512015_64513018_64513137_64514292_64514456_64514681_64514907_64515673_64515821_64515929_64516053_64516841_64516979_64518049
transcript_14803.known	chr13	+	4118	8	FSM	ENSMUSG00000021483.9	ENSMUST00000021939.8	4118	8	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_1	3.65892813567591	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTGTATGCTGCCATT	NA	False	NA	NA	False	AATAAA	-17	NA	64580127	64589587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_64580485_64580790_64580905_64583931_64584121_64584306_64584429_64584579_64584643_64585202_64585327_64585690_64585847_64586594
transcript_14805.known	chr13	-	3251	13	FSM	ENSMUSG00000038212.17	ENSMUST00000054730.10	3251	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	144.098827969634	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATGGCTTAAAAACAATTT	NA	False	NA	-15	True	AATAAA	-17	NA	65260788	65212959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_65214676_65215676_65215820_65217457_65217556_65219818_65219932_65221369_65221442_65222799_65222914_65223297_65223517_65226167_65226283_65229213_65229342_65234902_65234966_65243432_65243529_65260317_65260473_65260569
transcript_14809.known	chr13	-	3551	11	FSM	ENSMUSG00000032999.11	ENSMUST00000221659.2	3551	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_10	15.0253119767944	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTCTACTGACTTCTAAT	NA	False	NA	-13	True	ATTAAA	-18	NA	65353782	65324930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_65325478_65329342_65329517_65330716_65330888_65332776_65332948_65335254_65335423_65338038_65338201_65338632_65338792_65341799_65343370_65346982_65347285_65353433_65353531_65353752
transcript_14810.nnic	chr13	-	3571	11	NNC	ENSMUSG00000032999.11	novel	3527	10	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_10	16.0947196309846	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGACTTCTAATCTCAAA	NA	False	NA	-7	True	ATTAAA	-24	NA	65353820	65324924	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_65325478_65329342_65329517_65330716_65330888_65332776_65332948_65335254_65335423_65338038_65338201_65338632_65338792_65341799_65343370_65346982_65347285_65353433_65353531_65353776
transcript_14813.known	chr13	+	2909	8	FSM	ENSMUSG00000021514.19	ENSMUST00000126879.8	2909	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	11.5564276663752	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATACCCTCCCCCCACCC	NA	False	NA	NA	False	NA	NA	NA	65426627	65445609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_65426802_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65443413_65443541_65443876
transcript_14815.nnic	chr13	+	1551	7	NIC	ENSMUSG00000021514.19	novel	1580	8	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_1	18.830383249773	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTCTGCTGTGATAGCT	NA	False	NA	25	True	AATAAA	-18	NA	65426639	65452034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_65426913_65427074_65427155_65428075_65428203_65432734_65432831_65439636_65440120_65442209_65442299_65451631
transcript_1482.known	chr1	-	5679	20	FSM	ENSMUSG00000026211.19	ENSMUST00000113567.10	5679	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	17.6022536960486	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGTCTGTGTGCCACGA	NA	False	NA	NA	False	AATAAA	-21	NA	75483005	75462468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_75462604_75463283_75463554_75463866_75463972_75464272_75464435_75464549_75464707_75465232_75465346_75466126_75466394_75467439_75467713_75467831_75468102_75469149_75469438_75469513_75469790_75470428_75470702_75473651_75473925_75474718_75474992_75476545_75476819_75478602_75478900_75479556_75479860_75480010_75480263_75480340_75480611_75481856
transcript_14824.known	chr13	+	1815	1	FSM	ENSMUSG00000021514.19	ENSMUST00000222364.2	1815	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTCTGCTGTGATAGCT	NA	False	NA	25	True	AATAAA	-18	NA	65450219	65452034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_65450200_65452000
transcript_14825.nnic	chr13	-	579	3	NNC	ENSMUSG00000113955.2	novel	364	2	NA	NA	-7055	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	204	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCCTTCGTTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	65651662	65639602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_65639775_65644415_65644605_65651444
transcript_14826.nnic	chr13	-	492	3	NNC	ENSMUSG00000113955.2	novel	364	2	NA	NA	-142814	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	204	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCCTTCGTTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	65787421	65639602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_65639775_65644415_65644605_65787290
transcript_14827.known	chr13	-	364	2	FSM	ENSMUSG00000113955.2	ENSMUST00000220945.2	364	2	0	0	0	0	multi-exon	FALSE	canonical	3	408	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGCCTTCGTTCCATTAT	NA	False	NA	NA	False	NA	NA	NA	65644607	65639602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_65639775_65644415
transcript_1483.known	chr1	-	6315	18	FSM	ENSMUSG00000026235.15	ENSMUST00000188952.7	6315	18	0	0	0	0	multi-exon	TRUE	canonical	3	112	junction_15	30.5422731607683	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAAATCTGGTTGTCTTT	NA	False	NA	-7	True	AATAAA	-19	NA	77491716	77343825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_77346309_77349546_77350485_77351407_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
transcript_14837.nnic	chr13	+	550	4	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	-62	128	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	24.2257897474755	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGCCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	66392021	66599466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_66392214_66448255_66448445_66453083_66453217_66599430
transcript_14838.nnic	chr13	+	507	4	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47355	128	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	25.1705295048705	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGCCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	66439438	66599466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_66439588_66448255_66448445_66453083_66453190_66599403
transcript_1484.known	chr1	-	3612	17	FSM	ENSMUSG00000026235.15	ENSMUST00000188797.7	3612	17	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_14	22.2548274257519	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGAAAATGGATTTTTA	NA	False	NA	NA	False	NA	NA	NA	77491725	77349775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_77350485_77351407_77351564_77354050_77354245_77357500_77357651_77359505_77359716_77360159_77360222_77364433_77364620_77365109_77365224_77366669_77366729_77375130_77375243_77376274_77376435_77377836_77377962_77403187_77403527_77421501_77421658_77483184_77483849_77488319_77488388_77491577
transcript_14840.nnic	chr13	+	576	4	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47286	128	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	25.1705295048705	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGCCTTGGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	66439369	66599466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_66439588_66448255_66448445_66453083_66453217_66599430
transcript_14843.nnic	chr13	+	600	3	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47286	-4287	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0.5	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCTTTTGGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	66439369	66448940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_66439588_66448255_66448445_66448747
transcript_14844.nnic	chr13	+	551	3	NNC	ENSMUSG00000114616.2	novel	463	3	NA	NA	47286	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	22.5	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAGCATGTGAACCTTGA	NA	False	NA	NA	False	NA	NA	NA	66439369	66453227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_66439588_66448255_66448445_66453083
transcript_14848.known	chr13	-	1519	4	FSM	ENSMUSG00000097483.3	ENSMUST00000180403.3	1519	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	5.09901951359278	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCATCAAGAACTGTTT	NA	False	NA	NA	False	NA	NA	NA	66667951	66651229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_66652035_66652807_66652875_66653161_66653268_66667410
transcript_14850.known	chr13	-	1094	3	FSM	ENSMUSG00000097483.3	ENSMUST00000181516.2	1094	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	24	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAAGAACTGTTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	66667587	66651223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_66652035_66653161_66653268_66667410
transcript_14854.nnic	chr13	-	2360	6	NNC	ENSMUSG00000114549.2	novel	1621	5	NA	NA	-9964	353	intron_retention	FALSE	canonical	3	25	junction_5	11.6961532137708	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTGTCTGAGATTCCTT	NA	False	NA	NA	False	AATAAA	-18	NA	66846380	66830549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_66832305_66833395_66833450_66834628_66834801_66836256_66836399_66841838_66841917_66846221
transcript_14856.nnic	chr13	-	1680	6	NNC	ENSMUSG00000114549.2	novel	1621	5	NA	NA	-9964	-327	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_5	11.6961532137708	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGATGTTTTTTTTTCTTC	NA	False	NA	NA	False	AATAAA	-19	NA	66846380	66831229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_66832305_66833395_66833450_66834628_66834801_66836256_66836399_66841838_66841917_66846221
transcript_14858.nnic	chr13	-	2239	5	NNC	ENSMUSG00000114549.2	novel	1621	5	NA	NA	-9921	353	intron_retention	FALSE	canonical	3	26	junction_4	11.6726175299288	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTGTCTGAGATTCCTT	NA	False	NA	NA	False	AATAAA	-18	NA	66846337	66830549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_66832305_66833395_66833450_66834628_66834801_66836256_66836399_66846221
transcript_1486.known	chr1	+	1849	1	FSM	ENSMUSG00000101849.2	ENSMUST00000189147.2	1849	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAAGTCTCGATTCTTT	NA	False	NA	NA	False	ATTAAA	-23	NA	77491916	77493765	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_77491900_77493800
transcript_14866.nnic	chr13	+	1622	5	NNC	ENSMUSG00000114226.2	novel	818	2	NA	NA	-24311	477	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	16.2692194035239	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAAATAAAGTTTCTTC	NA	False	NA	NA	False	AATAAA	-24	NA	66901193	66927683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_66901313_66924718_66924862_66925311_66925946_66926829_66927256_66927383
transcript_1487.known	chr1	-	2036	18	FSM	ENSMUSG00000026245.17	ENSMUST00000170217.8	2036	18	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	335.563627493931	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATGGCTCTGCTACTAT	NA	False	NA	NA	False	AATAAA	-18	NA	78465496	78394611	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_78394860_78401829_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
transcript_14870.known	chr13	-	464	4	FSM	ENSMUSG00000114353.2	ENSMUST00000224917.2	464	4	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	5.73488351136175	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATACTGGAGAGAAACCTT	NA	False	NA	NA	False	NA	NA	NA	66950624	66941415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_66941596_66942701_66942763_66942962_66943090_66950528
transcript_14872.known	chr13	+	3424	13	FSM	ENSMUSG00000021518.5	ENSMUST00000021990.4	3424	13	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_7	19.2476549798209	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGCTTTCTCTCTCTCT	7858	False	NA	NA	False	TATAAA	-12	NA	67080893	67146465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_67081751_67093340_67093433_67101583_67101629_67104445_67104571_67111376_67111536_67114453_67114606_67120557_67120700_67122508_67122622_67124809_67124876_67135817_67135918_67142016_67142086_67143410_67143481_67145031
transcript_14883.known	chr13	-	1415	8	FSM	ENSMUSG00000021519.12	ENSMUST00000173158.8	1415	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_6	120.714539306581	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAAATGTTTCTGGTTT	398	False	NA	NA	False	AATAAA	-10	NA	67081131	67060189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076352_67077948_67078288_67080998
transcript_14885.known	chr13	-	1479	8	FSM	ENSMUSG00000021519.12	ENSMUST00000021991.11	1479	8	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_6	16.4005973012185	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTCTGGTTTCAATATTA	377	False	NA	NA	False	AATAAA	-18	NA	67081152	67060181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67060443_67062690_67062853_67064676_67064749_67065089_67065238_67070819_67071010_67076233_67076387_67077948_67078288_67080998
transcript_14897.known	chr13	-	535	4	FSM	ENSMUSG00000021520.5	ENSMUST00000021993.5	535	4	0	0	0	0	multi-exon	FALSE	canonical	3	4784	junction_3	381.861231339344	3975	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGATTATTTGAATTCAA	7712	False	NA	-25	True	AATAAA	-18	NA	67053442	67048680	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67048891_67049465_67049633_67050793_67050866_67053356
transcript_14898.known	chr13	-	2353	4	FSM	ENSMUSG00000021519.12	ENSMUST00000174011.8	2353	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_2	10.2306728354819	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATGGTCATTACTGTT	427	False	NA	NA	False	AATAAA	-15	NA	67081102	67069252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67071010_67076233_67076387_67077948_67078288_67080998
transcript_1490.known	chr1	-	1801	17	FSM	ENSMUSG00000026245.17	ENSMUST00000189529.7	1801	17	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_15	338.950378927359	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTGCGTAGCTGCATTA	NA	False	NA	-2	True	AATAAA	-19	NA	78465499	78401721	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456651_78458944_78459001_78465421
transcript_14900.known	chr13	-	2416	4	FSM	ENSMUSG00000058883.17	ENSMUST00000109742.11	2416	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	6.68331255192114	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCAGTGTCGTGTTTAGT	NA	False	NA	1	True	AATAAA	-20	NA	67229576	67217462	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67219593_67222149_67222246_67222896_67223024_67229513
transcript_14901.known	chr13	-	3968	4	FSM	ENSMUSG00000090641.3	ENSMUST00000167565.3	3968	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	4.10960933531265	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTGCTTTTCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	67209234	67186659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67190297_67192821_67192918_67200350_67200478_67209126
transcript_14902.nnic	chr13	+	1664	4	NNC	ENSMUSG00000058900.6	novel	2591	4	NA	NA	-69	-918	at_least_one_novel_splicesite	TRUE	canonical	3	5	junction_1	9.80929264637478	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATTGGTTCTGAAATTAT	NA	False	NA	NA	False	NA	NA	NA	67321176	67331190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_67321240_67324511_67324639_67325128_67325225_67329812
transcript_14903.nnic	chr13	+	1746	4	NNC	ENSMUSG00000058900.6	novel	2591	4	NA	NA	-69	-836	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	9.80929264637478	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTAGAGTCTTGTTCCT	NA	False	NA	NA	False	NA	NA	NA	67321176	67331272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_67321240_67324511_67324639_67325128_67325225_67329812
transcript_14905.known	chr13	+	397	4	FSM	ENSMUSG00000058900.6	ENSMUST00000225334.2	397	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	8.28653526310404	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAGAAGAAATCATATAG	NA	False	NA	NA	False	NA	NA	NA	67321262	67329876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_67321373_67324511_67324639_67325128_67325225_67329812
transcript_14907.known	chr13	+	2591	4	FSM	ENSMUSG00000058900.6	ENSMUST00000021997.8	2591	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	10.6144555520604	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACATTGTATCTCATCTTA	NA	False	NA	NA	False	AATAAA	-25	NA	67321245	67332108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_67321318_67324511_67324639_67325128_67325225_67329812
transcript_14909.nnic	chr13	+	2685	4	NNC	ENSMUSG00000051037.16	novel	2712	4	NA	NA	215	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	1.24721912892465	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGGTTTATTATTATTAT	NA	False	NA	14	True	AATAAA	-19	NA	67342813	67357362	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_67342876_67346596_67346724_67347212_67347309_67354962
transcript_1491.known	chr1	-	1951	17	FSM	ENSMUSG00000026245.17	ENSMUST00000068333.14	1951	17	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_9	154.241693455434	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGCCAGCGTGTGGAACA	NA	False	NA	15	True	AATAAA	-36	NA	78465534	78401704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_78401983_78420271_78420428_78431390_78431509_78435201_78435295_78438942_78439024_78439471_78439680_78439908_78439971_78443603_78443656_78444607_78444670_78445888_78445960_78447719_78447829_78449120_78449272_78452826_78452943_78454829_78454900_78456593_78456749_78458944_78459001_78465421
transcript_14911.known	chr13	+	2712	4	FSM	ENSMUSG00000051037.16	ENSMUST00000120861.8	2712	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1.63299316185545	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGGTTTATTATTATTAT	NA	False	NA	14	True	AATAAA	-19	NA	67342569	67357362	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_67342659_67346596_67346724_67347212_67347309_67354962
transcript_14912.known	chr13	-	4126	4	FSM	ENSMUSG00000078995.11	ENSMUST00000057070.9	4126	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	8.33999733546453	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATAGGAAATGGGGCCTTA	2228	False	NA	NA	False	NA	NA	NA	67523929	67511702	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67515485_67520295_67520392_67520869_67520997_67523808
transcript_14917.known	chr13	-	379	4	FSM	ENSMUSG00000078994.10	ENSMUST00000224825.2	379	4	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_3	15.4128373622625	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTAAGGCCCTTAGTTC	5199	False	NA	NA	False	NA	NA	NA	67547938	67539073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67539184_67544162_67544259_67544748_67544876_67547892
transcript_14920.known	chr13	-	3334	4	FSM	ENSMUSG00000055560.9	ENSMUST00000056470.10	3334	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	6.23609564462324	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTTAATTTGTGTAAAAAAC	NA	False	NA	-4	True	NA	NA	NA	67569537	67553827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67556862_67561226_67561323_67561952_67562080_67569460
transcript_14923.known	chr13	-	504	3	FSM	ENSMUSG00000055560.9	ENSMUST00000224496.2	504	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCATGGCTCTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	67569527	67561012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67561323_67561952_67562080_67569460
transcript_14924.known	chr13	-	2056	4	FSM	ENSMUSG00000078994.10	ENSMUST00000109732.3	2056	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	14.7196014438797	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTCCTTTGCTTCAAAGC	5251	False	NA	NA	False	AATAAA	-25	NA	67547886	67537422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67539184_67544162_67544259_67544748_67544876_67547814
transcript_14925.nnic	chr13	-	1911	6	NNC	ENSMUSG00000069206.15	novel	483	5	NA	NA	-24	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	46.581541408588	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAAGATTGGTGTCTGCT	9914	False	NA	0	True	NA	NA	NA	67599767	67588555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_67588609_67590024_67591454_67595482_67595552_67596939_67597036_67597468_67597596_67599630
transcript_14926.nnic	chr13	-	1834	5	NNC	ENSMUSG00000069206.15	novel	1092	5	NA	NA	-24	-4	intron_retention	FALSE	non_canonical	0	0	junction_1	45.4780166673966	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTAAGATTGGTGTCTGCT	9914	False	NA	0	True	NA	NA	NA	67599767	67588555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_67588601_67590024_67591454_67596939_67597036_67597468_67597596_67599630
transcript_14928.known	chr13	-	1520	6	FSM	ENSMUSG00000097565.2	ENSMUST00000167914.2	1520	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	17.7268158449283	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATGAATATAAGTGTGGG	9248	False	NA	NA	False	NA	NA	NA	67674270	67639270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67640270_67642125_67642222_67642721_67642849_67668744_67668841_67669311_67669439_67674195
transcript_14930.known	chr13	-	2300	4	FSM	ENSMUSG00000071291.11	ENSMUST00000171518.8	2300	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	12.657891697365	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTTGGTCATGCCAT	NA	False	NA	0	True	NA	NA	NA	67648622	67638285	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67640270_67642125_67642222_67642721_67642849_67648529
transcript_14931.known	chr13	-	2656	4	FSM	ENSMUSG00000097333.8	ENSMUST00000181767.8	2656	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	7.71722460186015	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTGGTCATAGTGTTTA	9222	False	NA	NA	False	NA	NA	NA	67674296	67663899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67666232_67668744_67668841_67669311_67669439_67674195
transcript_14932.known	chr13	-	382	2	FSM	ENSMUSG00000097333.8	ENSMUST00000181573.2	382	2	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGGCTATTTGGTTTGTT	9222	False	NA	NA	False	AATAAA	-20	NA	67674296	67669157	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67669439_67674195
transcript_14933.known	chr13	-	2391	4	FSM	ENSMUSG00000071291.11	ENSMUST00000076123.12	2391	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	4.08248290463863	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGTCTTTGGTCATGCCA	NA	False	NA	-1	True	NA	NA	NA	67648674	67638286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67640270_67642125_67642222_67642721_67642849_67648489
transcript_14934.known	chr13	-	855	4	FSM	ENSMUSG00000058093.14	ENSMUST00000138725.3	855	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	22.5437845585479	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAGAGAAACCATACAAGT	NA	False	NA	NA	False	NA	NA	NA	67757806	67741547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67742035_67743334_67743431_67744767_67744895_67757661
transcript_14935.known	chr13	-	4835	4	FSM	ENSMUSG00000058093.14	ENSMUST00000012873.16	4835	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	17.2497987105808	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTTTGGTGTCTCTTC	NA	False	NA	-4	True	NA	NA	NA	67757826	67737557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67742035_67743334_67743431_67744767_67744895_67757691
transcript_14936.known	chr13	-	652	4	FSM	ENSMUSG00000048280.19	ENSMUST00000175821.8	652	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	5.09901951359278	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATACAAGTGTGAAGTATGT	NA	False	NA	NA	False	NA	NA	NA	67831635	67819385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67819731_67821116_67821213_67821680_67821808_67831551
transcript_14938.known	chr13	-	712	3	FSM	ENSMUSG00000048280.19	ENSMUST00000125495.10	712	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTTATTTGATAAGATT	NA	False	NA	NA	False	NA	NA	NA	67831670	67820746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67821213_67821680_67821808_67831551
transcript_14939.known	chr13	-	1103	4	FSM	ENSMUSG00000071281.13	ENSMUST00000130891.3	1103	4	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_1	3.85861230093008	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCATTCATACAGGAGAG	NA	False	NA	NA	False	NA	NA	NA	67872445	67856307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67857049_67858433_67858530_67858999_67859127_67872306
transcript_14940.known	chr13	-	2312	4	FSM	ENSMUSG00000058331.16	ENSMUST00000144183.3	2312	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	2.44948974278318	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCAGTATTGTGATTAAT	NA	False	NA	NA	False	AATAAA	-21	NA	67903347	67895918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_67897842_67899728_67899825_67900506_67900634_67903181
transcript_14942.known	chr13	+	3258	4	FSM	ENSMUSG00000090659.10	ENSMUST00000164936.10	3258	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	3.39934634239519	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGATTTTGGTCAGTG	NA	False	NA	5	True	NA	NA	NA	67927823	67937197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_67927939_67931908_67932036_67932512_67932609_67934277
transcript_14944.known	chr13	+	2399	4	FSM	ENSMUSG00000030446.18	ENSMUST00000181391.8	2399	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	7.58653778449403	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGATTAGTATTGCATT	NA	False	NA	NA	False	AATAAA	-17	NA	67961858	67975121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_67962016_67970359_67970487_67971218_67971315_67973102
transcript_14948.known	chr13	-	3692	15	FSM	ENSMUSG00000034617.8	ENSMUST00000045827.5	3692	15	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_10	41.7021141733919	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTGGTGAGGCTTTGTG	NA	False	NA	NA	False	ATTAAA	-25	NA	68730240	68708898	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68723136_68723510_68725706_68725825_68727661_68727816_68728669_68728835_68730183
transcript_14954.known	chr13	-	2728	14	FSM	ENSMUSG00000034617.8	ENSMUST00000223101.2	2728	14	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_10	83.6727918422384	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAAAAAAAAGAACT	NA	False	NA	-90	True	NA	NA	NA	68730232	68709481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68725706_68725825_68727661_68727816_68728669_68728835_68730183
transcript_14956.nic	chr13	-	2705	13	NIC	ENSMUSG00000034617.8	novel	2728	14	NA	NA	-13	82	combination_of_known_junctions	FALSE	canonical	3	56	junction_11	116.868753546684	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGCTATTGTGTGCGT	NA	False	NA	-8	True	AATAAA	-14	NA	68730281	68709399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_68710552_68712438_68712622_68712718_68712812_68713228_68713348_68714186_68714374_68715060_68715104_68716890_68717072_68718122_68718212_68719188_68719343_68720696_68720820_68725706_68725825_68728669_68728835_68730183
transcript_14961.nic	chr13	-	488	3	ISM	ENSMUSG00000034617.8	ENSMUST00000223101.2	2728	14	-49	18109	-13	0	5prime_fragment	FALSE	canonical	3	370	junction_2	18.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAAAGTTGCATAGGCCT	NA	False	NA	NA	False	AATATA	-16	NA	68730281	68727590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_68727816_68728669_68728835_68730183
transcript_14964.nic	chr13	+	2322	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	45.0175891550551	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGTTAATTGTCCGTCT	NA	False	NA	NA	False	AATAAA	-14	NA	68730319	68740397	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_68730384_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
transcript_14970.nic	chr13	+	2629	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	39.5010548382361	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGTTAATTGTCCGTCT	NA	False	NA	NA	False	AATAAA	-14	NA	68730346	68740397	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_68730718_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
transcript_14971.nic	chr13	+	2689	7	NIC	ENSMUSG00000021532.12	novel	2421	7	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	39.5010548382361	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTGTACTCTTGTTAC	NA	False	NA	NA	False	AATAAA	-14	NA	68730346	68740457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_68730718_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
transcript_14972.known	chr13	+	2421	7	FSM	ENSMUSG00000021532.12	ENSMUST00000051784.10	2421	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	41.7053154086303	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTGTACTCTTGTTAC	NA	False	NA	NA	False	AATAAA	-14	NA	68730366	68740457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_68730470_68731657_68733122_68733296_68733383_68735778_68735954_68737438_68737509_68738224_68738340_68740049
transcript_14978.nnic	chr13	+	929	6	NIC	ENSMUSG00000021532.12	novel	2501	7	NA	NA	-7	0	combination_of_known_splicesites	TRUE	canonical	0	0	junction_1	72.0333256208541	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGTTAATTGTCCGTCT	NA	False	NA	NA	False	AATAAA	-14	NA	68730345	68740397	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_68730384_68733296_68733383_68735778_68735954_68737341_68737509_68738224_68738340_68740049
transcript_14983.nnic	chr13	+	624	3	NNC	ENSMUSG00000021534.9	novel	1826	3	NA	NA	8402	-1	intron_retention	FALSE	canonical	3	9	junction_1	4.5	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTAGCAGCTGTGTTTG	NA	False	NA	2	True	AATAAA	-18	NA	68753959	68761405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_68754010_68759279_68759397_68760948
transcript_14985.known	chr13	+	2834	19	FSM	ENSMUSG00000021595.19	ENSMUST00000109699.11	2834	19	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_7	132.889457914055	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTGGCATGAGACTTGGA	NA	False	NA	31	True	AATAAA	-19	NA	69760134	69782453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_69760308_69760419_69760578_69761056_69761162_69763530_69763637_69765524_69765597_69766224_69766310_69767564_69767758_69769723_69769799_69771281_69771413_69774596_69774671_69775154_69775286_69775678_69775776_69777653_69777836_69778120_69778214_69778746_69778883_69779353_69779435_69779650_69779790_69781346_69781387_69781690
transcript_14988.known	chr13	-	2644	5	FSM	ENSMUSG00000021594.12	ENSMUST00000091514.6	2644	5	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_3	7.15454401062709	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTATTGTTTGTCTTCAT	NA	False	NA	NA	False	AATAAA	-19	NA	69759561	69721567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_69723316_69734703_69734855_69743034_69743137_69748349_69748517_69759085
transcript_14990.known	chr13	+	913	4	FSM	ENSMUSG00000021598.10	ENSMUST00000022089.10	913	4	0	0	0	0	multi-exon	FALSE	canonical	3	786	junction_3	16.1314048434171	628	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCATGTAATTCTTAAAAT	NA	False	NA	27	True	AATAAA	-23	NA	69957959	69964223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_69958172_69959725_69959810_69961822_69961926_69963709
transcript_14992.known	chr13	+	300	1	FSM	ENSMUSG00000066407.4	ENSMUST00000085163.4	300	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1529	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAGTTTCTATTT	NA	False	NA	NA	False	AATAAA	-12	NA	73465962	73466262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_73466000_73466300
transcript_14994.known	chr13	-	534	4	FSM	ENSMUSG00000021606.9	ENSMUST00000147407.2	534	4	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_3	967.204333231723	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATAGTGAGTTGTTTCT	NA	False	NA	-8	True	AATAAA	-14	NA	73476571	73467997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_73468180_73468412_73468536_73475534_73475589_73476396
transcript_14997.known	chr13	+	717	3	FSM	ENSMUSG00000021607.10	ENSMUST00000221730.2	717	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	303	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACATTAAGCATTCTGTA	9283	False	NA	-3	True	NA	NA	NA	73476631	73479855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_73476740_73478978_73479211_73479478
transcript_15.known	ERCC-00044	+	1149	1	FSM	ERCC-00044A	DQ459424	1149	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AAAAAG	-27	NA	0	1149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00044_+_0_1100
transcript_150.known	SIRV6	+	1528	10	FSM	SIRV6A	SIRV612	1528	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	7772.9807349673	1504	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAGACCGGGAGTATACT	NA	False	NA	NA	False	NA	NA	NA	1087	11825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
transcript_1500.known	chr1	+	3950	16	FSM	ENSMUSG00000032883.16	ENSMUST00000035779.15	3950	16	0	0	0	0	multi-exon	TRUE	canonical	3	149	junction_2	98.3136477470617	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTCTTCAGAGTCTTGT	NA	False	NA	7	True	AATAAA	-19	NA	78635541	78685460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_78635821_78640857_78640998_78659309_78659728_78665953_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
transcript_15003.known	chr13	+	680	2	FSM	ENSMUSG00000021607.10	ENSMUST00000222030.2	680	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTTACCATATGCAGC	NA	False	NA	NA	False	NA	NA	NA	73479144	73480090	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_73479213_73479478
transcript_15005.known	chr13	-	568	4	FSM	ENSMUSG00000021606.9	ENSMUST00000022097.6	568	4	0	0	0	0	multi-exon	FALSE	canonical	3	2374	junction_2	33.95094500403	2231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGAGTTGTTTCTTCCTT	NA	False	NA	-3	True	AATAAA	-19	NA	73476661	73467992	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_73468180_73468412_73468536_73475534_73475589_73476457
transcript_15006.known	chr13	-	757	3	FSM	ENSMUSG00000021606.9	ENSMUST00000223293.2	757	3	0	0	0	0	multi-exon	FALSE	canonical	3	2374	junction_1	41.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGAGCCGCTTCGCTGC	NA	False	NA	33	True	CATAAA	-10	NA	73476581	73467956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_73468536_73475534_73475589_73476457
transcript_15007.known	chr13	+	923	2	FSM	ENSMUSG00000021607.10	ENSMUST00000022098.10	923	2	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_1	0	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGAGTAGTAGTGTTCT	NA	False	NA	13	True	ATTAAA	-26	NA	73479106	73480297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_73479211_73479478
transcript_15008.known	chr13	-	1306	3	FSM	ENSMUSG00000113346.3	ENSMUST00000223470.3	1306	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	10.5	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTCCTGAGTTCAAATCC	NA	False	NA	0	True	NA	NA	NA	73495503	73492783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_73493358_73494614_73495181_73495337
transcript_15011.known	chr13	+	2340	17	FSM	ENSMUSG00000021610.9	ENSMUST00000022102.9	2340	17	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_7	20.082544503872	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTCTTAACCTCTAAT	NA	False	NA	21	True	AATAAA	-16	NA	73752124	73768724	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_73752519_73753048_73753150_73754340_73754531_73755838_73755988_73757022_73757102_73759262_73759381_73759740_73759836_73760512_73760598_73761776_73761881_73762725_73762792_73763291_73763343_73764081_73764165_73764933_73764969_73765696_73765753_73765837_73765883_73766520_73766637_73768151
transcript_15013.known	chr13	+	5142	24	FSM	ENSMUSG00000017756.10	ENSMUST00000017900.9	5142	24	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_9	57.8026758755535	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGTGTGCCTCATTTCCA	NA	False	NA	104	True	AGTAAA	-29	NA	73911815	73964873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_73912010_73932637_73932733_73933162_73933286_73936683_73936831_73938059_73938115_73938768_73938900_73940668_73940911_73942042_73942255_73943216_73943385_73943722_73943822_73944885_73944944_73945645_73945821_73946537_73946657_73947061_73947161_73947731_73947852_73948503_73948609_73949046_73949216_73953532_73953729_73954147_73954318_73954424_73954557_73957103_73957212_73958024_73958204_73961657_73961792_73962961
transcript_15017.known	chr13	-	4016	10	FSM	ENSMUSG00000021567.16	ENSMUST00000022051.14	4016	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1.49897084035912	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCGCCAAGATGACCCTT	NA	False	NA	NA	False	AATAAA	-17	NA	73995750	73966652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_73969657_73970808_73970937_73971390_73971476_73972367_73972513_73973184_73973281_73973802_73973931_73974995_73975057_73995031_73995136_73995388_73995425_73995521
transcript_15019.known	chr13	-	3399	13	FSM	ENSMUSG00000021569.11	ENSMUST00000022053.11	3399	13	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_6	23.4319345243955	248	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74085903	74059465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74061459_74062606_74062677_74063576_74063690_74066529_74066684_74068113_74068221_74068466_74068554_74069291_74069356_74076029_74076103_74077777_74077869_74078278_74078335_74080976_74081107_74084225_74084392_74085608
transcript_1502.known	chr1	+	2976	15	FSM	ENSMUSG00000032883.16	ENSMUST00000142704.8	2976	15	0	0	0	0	multi-exon	FALSE	canonical	3	358	junction_1	36.8929090028677	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTTTTAAGAAATTTCGAA	NA	False	NA	3	True	AATAAA	-14	NA	78635599	78684684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_78635821_78659309_78659728_78665953_78666132_78667985_78668096_78669798_78669938_78671912_78672064_78673797_78673922_78674145_78674218_78674606_78674747_78676712_78676886_78677472_78677548_78678985_78679178_78681202_78681318_78682950_78683109_78683974
transcript_15028.nic	chr13	+	2437	16	NIC	ENSMUSG00000057649.7	novel	2430	16	NA	NA	-21	0	combination_of_known_junctions	TRUE	canonical	3	32	junction_6	34.8873743478768	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGAGTACCTGTTTGTA	NA	False	NA	19	True	TATAAA	-26	NA	74085908	74108936	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090749_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
transcript_15029.nic	chr13	+	2509	16	NIC	ENSMUSG00000057649.7	novel	2430	16	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_6	34.8873743478768	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGATCACCCCGTCCGCT	NA	False	NA	23	True	AATAAA	-20	NA	74085908	74109008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090749_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
transcript_15030.known	chr13	+	2407	16	FSM	ENSMUSG00000057649.7	ENSMUST00000099384.4	2407	16	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_6	21.3306248280625	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCCCGTCCGCTTTGATG	NA	False	NA	29	True	AATAAA	-26	NA	74085956	74109014	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_74086065_74086552_74086768_74086983_74087117_74088355_74088417_74088764_74088910_74090062_74090174_74090809_74090926_74092844_74092978_74094202_74094279_74095795_74095892_74098193_74098327_74099652_74099765_74102663_74102703_74103540_74103644_74105831_74106000_74108356
transcript_15038.nic	chr13	+	310	2	ISM	ENSMUSG00000057649.7	ENSMUST00000222191.2	4569	13	-31	22230	-21	-564	5prime_fragment	FALSE	canonical	3	174	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAAAAGTCAGAGA	NA	False	NA	NA	False	NA	NA	NA	74085908	74086706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_+_74086065_74086552
transcript_15041.known	chr13	-	3641	12	FSM	ENSMUSG00000021572.10	ENSMUST00000036456.8	3641	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_5	28.6590098045136	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGTGGCTGTTTTTAGATT	NA	False	NA	NA	False	NA	NA	NA	74210418	74184618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198178_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
transcript_15042.nnic	chr13	-	2352	12	NNC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	30.6737026303942	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGGTTCACTCTTTTT	NA	False	NA	0	True	NA	NA	NA	74210439	74185751	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198355_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
transcript_15043.nic	chr13	-	2289	12	NIC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_5	25.7267908724551	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGGTTCACTCTTTTT	NA	False	NA	0	True	NA	NA	NA	74210439	74185751	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198418_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
transcript_15046.nic	chr13	-	2217	12	NIC	ENSMUSG00000021572.10	novel	3641	12	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_5	25.7267908724551	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATGTTTTAAGAATTTG	NA	False	NA	-72	True	AATAAA	-21	NA	74210439	74185823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_74186448_74188169_74188282_74191624_74191752_74195154_74195352_74197014_74197154_74198418_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
transcript_15051.known	chr13	-	3231	11	FSM	ENSMUSG00000021572.10	ENSMUST00000222609.2	3231	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	42.0114270169439	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGTGGCTGTTTTTAGATT	NA	False	NA	NA	False	NA	NA	NA	74210360	74184618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74186448_74191624_74191752_74195154_74195352_74197014_74197154_74198418_74198484_74199533_74199741_74200999_74201179_74203001_74203111_74206420_74206614_74207560_74207689_74210302
transcript_15053.known	chr13	-	4922	13	FSM	ENSMUSG00000034152.7	ENSMUST00000035934.7	4922	13	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_12	37.5695651055774	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGGTAGGATTTTTCCT	7173	False	NA	NA	False	AATAAA	-16	NA	74356828	74317606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74320364_74321414_74321543_74322105_74322268_74328553_74328677_74330162_74330314_74330395_74330507_74332791_74332893_74337279_74337406_74338188_74338307_74340726_74341409_74347574_74347795_74355025_74355217_74356776
transcript_15057.known	chr13	-	1376	6	FSM	ENSMUSG00000021576.7	ENSMUST00000222759.2	1376	6	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_2	263.104085867172	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTAGTTTTGGCTGGT	NA	False	NA	-7	True	AATAAA	-17	NA	74465699	74451635	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74452168_74453659_74453770_74457808_74457962_74459786_74459832_74464448_74464511_74465225
transcript_1506.nnic	chr1	-	2741	7	NNC	ENSMUSG00000054702.15	novel	2876	5	NA	NA	0	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	8.03464719546263	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAATGTTGAACTTGGAG	NA	False	NA	NA	False	NA	NA	NA	79649685	79584598	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_79584845_79585161_79586920_79590617_79590810_79591919_79592058_79601398_79601508_79602823_79603003_79649566
transcript_15061.known	chr13	-	571	2	FSM	ENSMUSG00000021576.7	ENSMUST00000223386.2	571	2	0	0	0	0	multi-exon	FALSE	canonical	3	840	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGGAAGTATGTTTGCTA	NA	False	NA	NA	False	NA	NA	NA	74465335	74464049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74464511_74465225
transcript_15063.known	chr13	-	2900	15	FSM	ENSMUSG00000021577.15	ENSMUST00000022062.8	2900	15	0	0	0	0	multi-exon	FALSE	canonical	3	1480	junction_7	176.694897308026	1032	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGGTCAAGGTGTTCT	NA	False	NA	-8	True	NA	NA	NA	74498399	74470372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74471293_74471959_74472074_74475045_74475177_74475365_74475478_74476415_74476535_74479417_74479590_74480217_74480414_74481140_74481310_74482416_74482542_74485509_74485659_74487165_74487331_74487690_74487835_74491455_74491618_74492969_74493057_74498264
transcript_1509.known	chr1	-	4551	12	FSM	ENSMUSG00000073643.12	ENSMUST00000113515.8	4551	12	0	0	0	0	multi-exon	FALSE	canonical	3	564	junction_7	60.8834410035254	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTAATTTTGTTTGCT	NA	False	NA	0	True	AATAAA	-23	NA	79739486	79679978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79694919_79695033_79696840_79696992_79707372_79707428_79711516_79711591_79717778_79717847_79739280
transcript_15098.known	chr13	+	762	3	FSM	ENSMUSG00000021578.18	ENSMUST00000162376.2	762	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	206.5	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATACTGGGAACTACTTGT	4406	False	NA	NA	False	NA	NA	NA	74498483	74505167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_74498528_74500980_74501106_74504574
transcript_15100.known	chr13	+	369	2	FSM	ENSMUSG00000021578.18	ENSMUST00000223491.2	369	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGCAAGAAGAGGATGACTG	4392	False	NA	NA	False	AAAAAG	-38	NA	74498469	74504885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_74498528_74504574
transcript_15101.known	chr13	+	2682	4	FSM	ENSMUSG00000021578.18	ENSMUST00000160021.8	2682	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	196.493143787654	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAACTGCATTGGCCTGGT	4358	False	NA	NA	False	NA	NA	NA	74498435	74510820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_74498528_74500974_74501106_74504574_74504937_74508723
transcript_15102.known	chr13	-	4153	5	FSM	ENSMUSG00000069184.5	ENSMUST00000223163.3	4153	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	7.88590514779375	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTAGCTTTTGGTTGTGTT	NA	False	NA	-4	True	NA	NA	NA	74538955	74517444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74520947_74523086_74523183_74524554_74524682_74526730_74526986_74538782
transcript_15107.known	chr13	+	938	1	FSM	ENSMUSG00000062382.10	ENSMUST00000222435.2	938	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9236	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGAGATAA	7962	False	NA	NA	False	NA	NA	NA	74554527	74555465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_74554500_74555500
transcript_15108.known	chr13	-	1614	4	FSM	ENSMUSG00000112964.2	ENSMUST00000222455.2	1614	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	3.29983164553722	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTAGAATGCAATCAATGT	6469	False	NA	NA	False	NA	NA	NA	74610838	74595390	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74596679_74598074_74598136_74598354_74598482_74610700
transcript_15109.nnic	chr13	-	1679	6	NNC	ENSMUSG00000069208.10	novel	1549	5	NA	NA	-234	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	26.2022899762597	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	74642345	74628175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_74629270_74630657_74630719_74630935_74631063_74632017_74632142_74641968_74642054_74642157
transcript_1511.known	chr1	-	4551	12	FSM	ENSMUSG00000073643.12	ENSMUST00000113512.8	4551	12	0	0	0	0	multi-exon	FALSE	canonical	3	564	junction_7	59.0382982576312	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTAATTTTGTTTGCT	NA	False	NA	0	True	AATAAA	-23	NA	79739486	79679978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_79683288_79683960_79684070_79685168_79685300_79686809_79686912_79691574_79691681_79692590_79692718_79702361_79702475_79704282_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
transcript_15111.known	chr13	-	1549	5	FSM	ENSMUSG00000069208.10	ENSMUST00000221173.2	1549	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	20.0546129356814	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	74642111	74628175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74629270_74630657_74630719_74630935_74631063_74632017_74632142_74641968
transcript_15112.nnic	chr13	-	1692	5	NNC	ENSMUSG00000069208.10	novel	1549	5	NA	NA	-371	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	25.7815340893439	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	74642482	74628175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_74629270_74630657_74630719_74630935_74631063_74641968_74642054_74642157
transcript_15115.known	chr13	-	1406	4	FSM	ENSMUSG00000069208.10	ENSMUST00000202645.4	1406	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	20.237478982214	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGGTCATGATGTCTAT	NA	False	NA	NA	False	NA	NA	NA	74642089	74628172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74629270_74630657_74630719_74630935_74631063_74641968
transcript_15117.known	chr13	-	395	4	FSM	ENSMUSG00000113019.2	ENSMUST00000220784.2	395	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	21.249836600679	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGGAGAGAAACCTTATG	NA	False	NA	NA	False	NA	NA	NA	74670580	74657716	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74657816_74659212_74659274_74659474_74659602_74670472
transcript_15119.known	chr13	-	704	5	FSM	ENSMUSG00000113047.2	ENSMUST00000222092.2	704	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	21.3658606192215	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCAGAACACAGTAGTCTT	NA	False	NA	NA	False	NA	NA	NA	74712375	74702218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74702530_74703925_74703987_74704201_74704329_74711857_74711944_74712256
transcript_15122.nic	chr13	-	3402	4	ISM	ENSMUSG00000113047.2	ENSMUST00000222092.2	704	5	389	-2774	7	2584	3prime_fragment	FALSE	canonical	3	33	junction_3	16.8720676464584	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTGACTCTCCAGTTA	NA	False	NA	-1	True	ATTAAA	-19	NA	74711986	74699444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_74702530_74703925_74703987_74704201_74704329_74711857
transcript_15125.nnic	chr13	-	3206	6	NNC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18621	3079	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	30.5915020879982	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	74739532	74724397	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_74725525_74725953_74727579_74728971_74729033_74729232_74729360_74730309_74730434_74739390
transcript_15128.known	chr13	-	1179	6	FSM	ENSMUSG00000113204.2	ENSMUST00000220929.2	1179	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	38.8453343401753	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACATACTGGAGAGAAACCT	5218	False	NA	NA	False	NA	NA	NA	74765429	74755255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74755855_74757240_74757302_74758318_74758446_74759382_74759441_74760842_74761068_74765320
transcript_15129.known	chr13	-	1989	6	FSM	ENSMUSG00000113204.2	ENSMUST00000220478.2	1989	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	36.0366480128216	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTTAGAATGCAATCAATG	4826	False	NA	NA	False	NA	NA	NA	74765821	74754903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74755855_74757240_74757302_74758318_74758446_74759382_74759507_74760842_74761068_74765320
transcript_15133.known	chr13	-	1371	5	FSM	ENSMUSG00000113204.2	ENSMUST00000222003.2	1371	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	23.1786539729985	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACATACTGGAGAGAAACCT	4968	False	NA	NA	False	NA	NA	NA	74765679	74755255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74755855_74757240_74757302_74758318_74758446_74760842_74761068_74765320
transcript_15134.nnic	chr13	-	3743	4	NIC	ENSMUSG00000113204.2	novel	1049	11	NA	NA	18389	3079	combination_of_known_splicesites	FALSE	canonical	3	28	junction_3	25.3508711224421	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGATGTC	NA	False	NA	NA	False	NA	NA	NA	74739764	74724397	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_74727579_74728971_74729033_74729232_74729360_74739390
transcript_15135.known	chr13	-	1288	4	FSM	ENSMUSG00000113204.2	ENSMUST00000221506.2	1288	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	33.95094500403	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACATACTGGAGAGAAACCT	4826	False	NA	NA	False	NA	NA	NA	74765821	74755255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74755855_74757240_74757302_74758318_74758446_74765320
transcript_15136.known	chr13	-	5141	32	FSM	ENSMUSG00000021585.11	ENSMUST00000223206.2	5141	32	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_27	33.4677691410694	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCTTGGCTATGTGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	74956929	74840486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74928621_74928694_74946774_74946838_74956554
transcript_15137.known	chr13	-	2910	31	FSM	ENSMUSG00000021585.11	ENSMUST00000065629.6	2910	31	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_30	32.8517883835873	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACCCAAGGTAAACCTTGG	NA	False	NA	NA	False	AATAAA	-12	NA	74956058	74842406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74928621_74928694_74946774_74946838_74955937
transcript_15139.known	chr13	-	2857	30	FSM	ENSMUSG00000021585.11	ENSMUST00000223033.2	2857	30	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	32.8082020428457	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTCTACTTTCTTAGGAAT	NA	False	NA	NA	False	NA	NA	NA	74918768	74842361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852322_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74896923_74896981_74902429_74902490_74918664
transcript_15143.known	chr13	-	4765	29	FSM	ENSMUSG00000021585.11	ENSMUST00000222588.2	4765	29	0	0	0	0	multi-exon	TRUE	canonical	3	102	junction_28	16.6207701385947	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCTTGGCTATGTGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	74918855	74840486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_74842953_74844009_74844072_74847223_74847293_74848742_74848836_74849334_74849371_74850676_74850770_74852219_74852325_74861764_74861864_74869050_74869123_74869295_74869347_74872896_74872981_74873482_74873585_74875393_74875490_74876458_74876549_74879197_74879246_74880212_74880297_74883348_74883451_74884863_74884954_74885054_74885142_74885708_74885748_74886336_74886418_74887955_74888055_74889467_74889537_74892748_74892839_74894109_74894224_74894701_74894756_74896323_74896363_74902429_74902490_74918664
transcript_15147.known	chr13	+	276	1	FSM	ENSMUSG00000074800.5	ENSMUST00000099371.5	276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	65	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAGCCCTGCTGTCTGAG	3163	False	NA	NA	False	NA	NA	NA	75793014	75793290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_75793000_75793300
transcript_15148.known	chr13	+	4382	12	FSM	ENSMUSG00000001542.8	ENSMUST00000001583.8	4382	12	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_2	37.9194448472108	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAATAATTTTGACGTGTA	5452	False	NA	NA	False	AATAAA	-29	NA	75854875	75920483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_75855917_75873071_75873120_75894410_75894533_75898043_75898208_75904393_75904654_75909996_75910122_75910263_75910349_75911666_75912235_75914272_75914340_75917657_75917830_75918664_75918710_75918798
transcript_1515.known	chr1	-	717	5	FSM	ENSMUSG00000073643.12	ENSMUST00000048820.14	717	5	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_1	81.1984451821585	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTAATTATTTTTATACA	NA	False	NA	NA	False	CATAAA	-18	NA	79739486	79704119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_79704434_79707372_79707428_79711516_79711591_79717778_79717847_79739280
transcript_15150.known	chr13	+	1345	3	FSM	ENSMUSG00000021591.9	ENSMUST00000022082.8	1345	3	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_1	16	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTTTGTCCGGTTCTGT	NA	False	NA	30	True	ATTAAA	-22	NA	75987986	75998270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_75988295_75995288_75995418_75997362
transcript_15151.known	chr13	+	878	1	FSM	ENSMUSG00000061833.7	ENSMUST00000073790.7	878	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGTTTTTATATGAGAA	2375	False	NA	NA	False	NA	NA	NA	76102254	76103132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_76102300_76103100
transcript_15152.known	chr13	-	2807	4	FSM	ENSMUSG00000043190.15	ENSMUST00000050997.2	2807	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	20.2703943940144	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATTGTGTATGTGTATAA	NA	False	NA	0	True	AATAAA	-21	NA	76166681	76149653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76165639
transcript_15153.known	chr13	-	1436	4	FSM	ENSMUSG00000043190.15	ENSMUST00000179078.9	1436	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	36.2981481009094	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACATAAATAAAAATAAAAGC	NA	False	NA	NA	False	NA	NA	NA	76166789	76150638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76166133
transcript_15154.nnic	chr13	-	1008	4	NNC	ENSMUSG00000043190.15	novel	2807	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_3	34.4125300177453	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAGTAATTTTGTTTC	NA	False	NA	-9	True	NA	NA	NA	76166681	76150885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_76151208_76156101_76156137_76156229_76156406_76166206
transcript_15155.known	chr13	-	595	4	FSM	ENSMUSG00000043190.15	ENSMUST00000167271.9	595	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	32.0555074137902	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTAAAGTAATTTTGTTTC	NA	False	NA	-9	True	NA	NA	NA	76166838	76150885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_76151208_76156101_76156137_76156229_76156406_76166776
transcript_15158.known	chr13	-	3657	8	FSM	ENSMUSG00000021592.19	ENSMUST00000239063.2	3657	8	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_3	7.18558647997674	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAATGTATAATTCTTTT	9776	False	NA	NA	False	NA	NA	NA	76246779	76208540	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_76210722_76213398_76213624_76214753_76214979_76220218_76220391_76222893_76223171_76239776_76239937_76242006_76242137_76246492
transcript_15162.nic	chr13	-	1062	4	ISM	ENSMUSG00000021592.19	ENSMUST00000224884.2	2731	5	-12	4184	-12	324	5prime_fragment	FALSE	canonical	3	21	junction_1	2.82842712474619	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGAGGTGCATGTGATAT	9764	False	NA	NA	False	AATAAA	-21	NA	76246791	76222697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_76223171_76239776_76239937_76242006_76242137_76246492
transcript_15164.nnic	chr13	+	786	5	NNC	ENSMUSG00000033991.10	novel	2116	5	NA	NA	-30	686	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	99.1476172179645	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTATATTATTAGTAT	NA	False	NA	17	True	AATAAA	-18	NA	76328513	76336829	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_76328672_76330933_76331065_76333245_76333370_76335718_76335814_76336551
transcript_15165.nnic	chr13	+	1242	5	NNC	ENSMUSG00000033991.10	novel	2116	5	NA	NA	-30	-940	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	99.1476172179645	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGAACTGTAACCTGTTT	NA	False	NA	NA	False	ATTAAA	-25	NA	76328513	76337285	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_76328672_76330933_76331065_76333245_76333370_76335718_76335814_76336551
transcript_15166.nnic	chr13	+	2004	5	NNC	ENSMUSG00000033991.10	novel	2116	5	NA	NA	-30	-178	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	99.1476172179645	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAATACTCAGTATTTCATT	NA	False	NA	6	True	ATTAAA	-18	NA	76328513	76338047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_76328672_76330933_76331065_76333245_76333370_76335718_76335814_76336551
transcript_15167.known	chr13	+	2116	5	FSM	ENSMUSG00000033991.10	ENSMUST00000223902.2	2116	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	121.425903332032	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTCATGTACTATAGTT	NA	False	NA	NA	False	NA	NA	NA	76328543	76338225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_76328636_76330933_76331065_76333245_76333370_76335718_76335814_76336551
transcript_1517.known	chr1	+	1424	4	FSM	ENSMUSG00000026248.10	ENSMUST00000027464.9	1424	4	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_2	2.44948974278318	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCTTTCCTTTCTTTAT	NA	False	NA	13	True	AATAAA	-15	NA	79753734	79759162	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_79754029_79755574_79756044_79757204_79757384_79758680
transcript_15171.known	chr13	-	3747	21	FSM	ENSMUSG00000021597.17	ENSMUST00000151524.9	3747	21	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_14	27.7961777947976	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATAGTCTTTAGTTG	NA	False	NA	-2	True	AATAAA	-22	NA	77283592	77191206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_77192150_77194640_77194824_77195228_77195322_77197205_77197337_77197996_77198161_77199267_77199414_77214718_77214867_77231559_77231726_77232450_77232580_77238423_77238588_77239303_77239463_77240476_77240531_77249040_77249176_77251599_77251744_77252652_77252797_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
transcript_15176.nic	chr13	-	929	7	ISM	ENSMUSG00000021597.17	ENSMUST00000151524.9	3747	21	-27	61532	-27	0	5prime_fragment	FALSE	canonical	3	79	junction_1	18.4842275106824	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAAAATTCAAAGAC	NA	False	NA	NA	False	AATAAA	-35	NA	77283619	77252738	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_77252797_77254094_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
transcript_15177.known	chr13	-	1241	6	FSM	ENSMUSG00000021597.17	ENSMUST00000162320.2	1241	6	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	13.9283882771841	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-45	NA	77283579	77253684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_77254224_77260690_77260854_77273348_77273590_77274483_77274560_77274719_77274834_77283471
transcript_15180.known	chr13	+	1539	4	FSM	ENSMUSG00000071252.7	ENSMUST00000225605.2	1539	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	17.5562587763516	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACACAATGTTTTTTCATT	NA	False	NA	NA	False	AATAAA	-20	NA	77283672	77341833	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_77283750_77322971_77323104_77331719_77331889_77340672
transcript_15183.known	chr13	+	616	3	FSM	ENSMUSG00000071252.7	ENSMUST00000225992.2	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	11	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGAGTGACTTACACTGT	NA	False	NA	NA	False	AATAAA	-17	NA	77283669	77332123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_77283750_77322971_77323104_77331719
transcript_15186.known	chr13	+	4101	8	FSM	ENSMUSG00000074794.11	ENSMUST00000099356.10	4101	8	0	0	0	0	multi-exon	TRUE	canonical	3	173	junction_5	15.8461995701281	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTGGCAGTTTATTTGA	NA	False	NA	30	True	AATAAA	-30	NA	81031528	81044161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_81032049_81035524_81035607_81037207_81037356_81038214_81038318_81038652_81038910_81039180_81039344_81039606_81039762_81041488
transcript_15188.known	chr13	-	2580	9	FSM	ENSMUSG00000069170.15	ENSMUST00000128585.9	2580	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	12.4172259381876	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAAAAACCCCACACAA	2372	False	NA	NA	False	NA	NA	NA	81781258	81725554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_81726512_81726838_81727116_81727403_81727970_81729810_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81781125
transcript_1519.known	chr1	+	885	2	FSM	ENSMUSG00000026248.10	ENSMUST00000189176.2	885	2	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTGGAGGTTTACGTTA	NA	False	NA	NA	False	AATAAA	-13	NA	79753832	79756263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_79754029_79755574
transcript_15190.known	chr13	-	1592	7	FSM	ENSMUSG00000069170.15	ENSMUST00000146749.2	1592	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	8.51958527942137	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTTTAAAGTGTATATGA	2370	False	NA	NA	False	AATAAA	-18	NA	81781260	81727159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_81727970_81729810_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81781125
transcript_15192.nic	chr13	-	1179	6	ISM	ENSMUSG00000069170.15	ENSMUST00000146749.2	1592	7	-46	2300	-33	0	5prime_fragment	FALSE	canonical	3	24	junction_1	7.78716893357271	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTGAACAGGGACATGAG	2324	False	NA	NA	False	NA	NA	NA	81781306	81729459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_81729925_81732159_81732265_81740676_81740773_81741108_81741259_81743295_81743478_81781125
transcript_15193.known	chr13	+	4250	3	FSM	ENSMUSG00000035840.8	ENSMUST00000224300.2	4250	3	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	12	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAAGTTGTTGAATATAAT	289	False	NA	27	True	AATAAA	-29	NA	81805781	81820990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_81806056_81813123_81813389_81817279
transcript_15196.known	chr13	-	3054	8	FSM	ENSMUSG00000035834.12	ENSMUST00000048993.12	3054	8	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_2	24.1119836409624	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGATTTGCAGTGAACA	NA	False	NA	-6	True	AATAAA	-18	NA	81859132	81821961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_81824242_81826234_81826379_81830230_81830314_81835244_81835296_81837315_81837376_81842766_81842897_81847862_81848013_81858976
transcript_15199.known	chr13	-	424	4	FSM	ENSMUSG00000035834.12	ENSMUST00000161093.8	424	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	130.922368855237	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTAAGACACAGGCTGCA	NA	False	NA	NA	False	NA	NA	NA	81859075	81841964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_81842010_81842766_81842897_81847862_81848013_81858976
transcript_1520.known	chr1	-	2210	9	FSM	ENSMUSG00000026249.11	ENSMUST00000027467.11	2210	9	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_4	6.12244844812923	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCGGGCGTGGTGGTGCAC	NA	False	NA	NA	False	TATAAA	-35	NA	79836413	79771913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_79772760_79774542_79774627_79777184_79777272_79779172_79779274_79780563_79780763_79788270_79788469_79794444_79794673_79798993_79799275_79836227
transcript_15200.known	chr13	-	733	3	FSM	ENSMUSG00000035834.12	ENSMUST00000161920.2	733	3	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_2	6.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAATGCTGTGATTACTGC	NA	False	NA	NA	False	NA	NA	NA	81859064	81842401	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_81842897_81847862_81848013_81858976
transcript_15201.known	chr13	+	3957	2	FSM	ENSMUSG00000051098.7	ENSMUST00000057598.7	3957	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTGCTTTTTATAGAACA	NA	False	NA	NA	False	ATTAAA	-25	NA	81859459	81901394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_81860102_81898079
transcript_15212.known	chr13	+	1226	5	FSM	ENSMUSG00000021537.10	ENSMUST00000022009.10	1226	5	0	0	0	0	multi-exon	FALSE	canonical	3	1314	junction_2	32.392128673491	1114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACAATAGTCTGGAACATT	NA	False	NA	NA	False	AATAAA	-15	NA	81931195	81945274	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_81931477_81932759_81932896_81934961_81935077_81940074_81940267_81944772
transcript_1522.known	chr1	-	1129	1	FSM	ENSMUSG00000026249.11	ENSMUST00000191026.2	1129	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAACA	-29	NA	79836352	79835223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_79835200_79836400
transcript_15224.known	chr13	+	2857	12	FSM	ENSMUSG00000035762.12	ENSMUST00000057495.10	2857	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	57.0470300398157	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAATACAATAAGAG	NA	False	NA	NA	False	NA	NA	NA	84370418	84444260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
transcript_15226.known	chr13	+	2632	12	FSM	ENSMUSG00000035762.12	ENSMUST00000223827.2	2632	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	68.3415099589633	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTAATTTATTTGTT	NA	False	NA	21	True	ATTAAA	-22	NA	84370432	84443989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430829_84430982_84431422_84431484_84432103_84432305_84434803_84434918_84440497_84440673_84441499_84441597_84442721
transcript_15227.nic	chr13	+	2554	12	NIC	ENSMUSG00000035762.12	novel	2857	12	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	69.776028941722	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTGTAATTTATTTGTT	NA	False	NA	21	True	ATTAAA	-22	NA	84370412	84443989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_84370554_84399348_84399453_84405879_84405964_84408261_84408360_84420289_84420447_84430867_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
transcript_1523.known	chr1	-	4709	16	FSM	ENSMUSG00000004364.15	ENSMUST00000163119.8	4709	16	0	0	0	0	multi-exon	FALSE	canonical	3	483	junction_14	55.1621448297854	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATTCTTTATGTCAGTGAA	NA	False	NA	NA	False	AATAAA	-21	NA	80318197	80242639	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_80245005_80246926_80247073_80249240_80249428_80254130_80254266_80255091_80255189_80255680_80255806_80258549_80258658_80259099_80259271_80260339_80260517_80261392_80261539_80264615_80264845_80266460_80266576_80267798_80267960_80281796_80281911_80300575_80300774_80317962
transcript_15232.known	chr13	+	2414	11	FSM	ENSMUSG00000035762.12	ENSMUST00000225069.2	2414	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	81.3373223065525	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACAGAGTGTAATTTATT	NA	False	NA	17	True	ATTAAA	-18	NA	84370444	84443985	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_84370554_84405879_84405964_84408261_84408360_84420289_84420447_84430867_84430982_84431422_84431484_84432103_84432245_84434803_84434918_84440497_84440673_84441499_84441597_84442721
transcript_15237.known	chr13	+	2045	9	FSM	ENSMUSG00000021548.11	ENSMUST00000022030.11	2045	9	0	0	0	0	multi-exon	FALSE	canonical	3	824	junction_5	83.2840583485219	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCAGTGTTTTGTTTTGA	NA	False	NA	8	True	AATAAA	-19	NA	85337526	85361842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
transcript_15239.known	chr13	+	1055	9	FSM	ENSMUSG00000021548.11	ENSMUST00000163600.8	1055	9	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_4	292.63455772516	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTGTGATTGTTTTA	NA	False	NA	15	True	ATTAAA	-22	NA	85337595	85361029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_85337772_85338872_85338996_85344370_85344445_85345469_85345681_85350559_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
transcript_15241.nic	chr13	+	1097	9	NIC	ENSMUSG00000021548.11	novel	2045	9	NA	NA	-50	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	310.456921327259	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATTTTCTTTGTGATTG	NA	False	NA	10	True	ATTAAA	-17	NA	85337476	85361024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_85337772_85338872_85338996_85344370_85344445_85345649_85345681_85350451_85350616_85354246_85354318_85356896_85357009_85359972_85360034_85360858
transcript_15245.known	chr13	-	315	3	FSM	ENSMUSG00000017778.15	ENSMUST00000017922.9	315	3	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	5048	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGATGATCTGAAAATTG	NA	False	NA	-93	True	AAGAAA	-5	NA	86194893	86193013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_86193028_86193845_86193973_86194719
transcript_15246.known	chr13	-	540	3	FSM	ENSMUSG00000017778.15	ENSMUST00000131011.2	540	3	0	0	0	0	multi-exon	FALSE	canonical	3	10515	junction_1	2196	5862	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGCCTCGTCTCTGCA	NA	False	NA	-14	True	AATAAA	-16	NA	86195023	86192934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_86193028_86193845_86193989_86194719
transcript_15248.known	chr13	-	2321	13	FSM	ENSMUSG00000021614.17	ENSMUST00000109543.9	2321	13	0	0	0	0	multi-exon	TRUE	canonical	3	4	junction_7	15.55813470682	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGCGAATAAAATGAAAG	2871	False	NA	-42	True	AATGAA	-15	NA	89890363	89805174	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_89805478_89805621_89805805_89810035_89810181_89826193_89826277_89827918_89828078_89832518_89832633_89833197_89833312_89860323_89860618_89869685_89869814_89869890_89870066_89873407_89873783_89879577_89879654_89890191
transcript_15249.known	chr13	-	2273	6	FSM	ENSMUSG00000021614.17	ENSMUST00000159337.8	2273	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	6.6932802122726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTTTGTTATTTATTAGT	2797	False	NA	NA	False	ATTAAA	-17	NA	89890437	89859344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_89860618_89869685_89869814_89869890_89870066_89873407_89873783_89879577_89879654_89890191
transcript_1525.known	chr1	+	3636	7	FSM	ENSMUSG00000026142.16	ENSMUST00000027322.14	3636	7	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	15.8893745069534	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTGTTGCTCGAGTCA	NA	False	NA	14	True	AATAAA	-20	NA	82294172	82423087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_82294370_82318039_82318552_82320450_82320584_82346012_82346102_82348054_82348112_82355281_82355426_82420583
transcript_15250.nic	chr13	-	1217	3	ISM	ENSMUSG00000021614.17	ENSMUST00000159337.8	2273	6	-291	13834	-100	374	5prime_fragment	FALSE	canonical	3	54	junction_2	6.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATGGTACATGGTTTTTA	2506	False	NA	NA	False	AATAAA	-33	NA	89890728	89873178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_89873783_89879577_89879654_89890191
transcript_15251.nic	chr13	-	1612	9	NIC	ENSMUSG00000021615.14	novel	1540	8	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	62.5119988482211	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAATGTTATTTAACTG	NA	False	NA	-7	True	AATAAA	-14	NA	90237709	89997039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_89997583_90089080_90089229_90139191_90139284_90140572_90140726_90149036_90149204_90210127_90210304_90219659_90219809_90225121_90225212_90237615
transcript_15253.known	chr13	-	1540	8	FSM	ENSMUSG00000021615.14	ENSMUST00000022115.14	1540	8	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	13.6993966796993	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAATGTTATTTAACTG	NA	False	NA	-7	True	AATAAA	-14	NA	90237727	89997039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_89997583_90089080_90089229_90139191_90139284_90140572_90140726_90149036_90149204_90210127_90210304_90219659_90219809_90237615
transcript_15256.known	chr13	+	8689	4	FSM	ENSMUSG00000012422.15	ENSMUST00000161568.8	8689	4	0	0	0	0	multi-exon	FALSE	canonical	3	1033	junction_1	130.199846390078	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAAAGGCTGAAAAGTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	90237241	90260376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_90237903_90246480_90246591_90249026_90249062_90252493
transcript_15266.known	chr13	+	937	4	FSM	ENSMUSG00000049517.9	ENSMUST00000051955.9	937	4	0	0	0	0	multi-exon	FALSE	canonical	3	13520	junction_1	3048.72640075601	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGGTCTATAGGATAATT	NA	False	NA	27	True	AATAAA	-23	NA	91071076	91073069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_91071319_91071705_91071866_91072444_91072566_91072655
transcript_15270.known	chr13	+	658	4	FSM	ENSMUSG00000049517.9	ENSMUST00000224463.2	658	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	9398.7280108652	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAAATATTTTGTGTCTT	NA	False	NA	NA	False	AATAAA	-13	NA	91071335	91072842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_91071526_91071705_91071866_91072444_91072566_91072655
transcript_15272.nnic	chr13	+	371	3	NIC	ENSMUSG00000049517.9	novel	937	4	NA	NA	-79	0	combination_of_known_splicesites	FALSE	canonical	2	14	junction_1	9897.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATATTTTGTGTCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	91071256	91072843	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_91071319_91072444_91072566_91072655
transcript_15277.known	chr13	-	1583	8	FSM	ENSMUSG00000021619.7	ENSMUST00000022119.6	1583	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	11.5121940673747	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTGACTACTGTTACTT	NA	False	NA	NA	False	ATTAAA	-15	NA	91372087	91083474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_91084365_91084705_91084822_91085411_91085510_91170688_91170787_91188968_91189108_91302335_91302432_91356436_91356553_91372057
transcript_15279.nnic	chr13	-	1200	8	NNC	ENSMUSG00000021619.7	novel	1583	8	NA	NA	6066	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	7.14856914468389	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATGACACATCTTAAAT	4946	False	NA	NA	False	ATTAAA	-37	NA	91366012	91083987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_91084365_91084705_91084822_91085411_91085510_91170688_91170787_91188968_91189108_91302335_91302432_91356436_91356553_91365852
transcript_15282.known	chr13	+	3957	17	FSM	ENSMUSG00000003992.16	ENSMUST00000004094.15	3957	17	0	0	0	0	multi-exon	TRUE	canonical	3	38	junction_13	7.3396930283221	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTTGATAATTTGATGGA	2721	False	NA	NA	False	NA	NA	NA	91609168	91851548	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728_91712814_91790420_91790511_91812236_91812297_91817794_91817862_91818512_91818584_91823176_91823245_91828708_91828758_91831800_91831837_91833329_91833385_91836914_91836986_91838978_91839058_91841149_91841179_91842137_91842237_91848784
transcript_15284.known	chr13	+	1633	16	FSM	ENSMUSG00000003992.16	ENSMUST00000042122.15	1633	16	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	12.5973542195706	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTTCATTCACTGTGTC	2762	False	NA	-6	True	AATAAA	-14	NA	91609209	91849355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_91609368_91672703_91672777_91687453_91687516_91712728_91712814_91812236_91812297_91817794_91817862_91818512_91818584_91823176_91823245_91828708_91828758_91831800_91831837_91833329_91833385_91836914_91836986_91838978_91839058_91841149_91841179_91842137_91842237_91848784
transcript_15287.known	chr13	-	1541	6	FSM	ENSMUSG00000021621.16	ENSMUST00000022121.13	1541	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	29.1108227296997	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTTGTTGAACTGATCA	NA	False	NA	NA	False	AATAAA	-16	NA	91955824	91944651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_91945374_91946941_91947011_91948729_91948823_91948984_91949136_91953869_91954280_91955728
transcript_15289.nic	chr13	-	1473	5	NIC	ENSMUSG00000021621.16	novel	1541	6	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	56.3427013906859	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTTTGTTGAACTGATC	NA	False	NA	NA	False	AATAAA	-15	NA	91955826	91944652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_91945374_91948729_91948823_91948984_91949136_91953869_91954280_91955728
transcript_15290.nic	chr13	-	303	2	ISM	ENSMUSG00000021621.16	ENSMUST00000178084.2	931	4	-46	7127	-2	-5471	5prime_fragment	FALSE	canonical	3	139	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAACAAAAAGAAAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	91955826	91954074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_91954280_91955728
transcript_15291.known	chr13	-	3946	24	FSM	ENSMUSG00000014850.16	ENSMUST00000185852.7	3946	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	25.3850498550558	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCGTATTGTATTTTGTT	NA	False	NA	NA	False	AATAAA	-28	NA	92491503	92348379	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_92349055_92351977_92352150_92357463_92357594_92359617_92359805_92372081_92372240_92386334_92386447_92393202_92393311_92400228_92400346_92402434_92402500_92410459_92410629_92411237_92411426_92422384_92422518_92435660_92435771_92436781_92436867_92445952_92446068_92449081_92449195_92478753_92478921_92481463_92481610_92483240_92483359_92483836_92483954_92485656_92485846_92487738_92487960_92489732_92489851_92491270
transcript_15297.known	chr13	-	1152	6	FSM	ENSMUSG00000034334.9	ENSMUST00000040106.9	1152	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	1.62480768092719	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTAACAGTGTTCAAGCT	NA	False	NA	NA	False	AATAAA	-15	NA	92620521	92586340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_92586761_92603484_92603621_92604452_92604671_92610470_92610637_92614335_92614462_92620435
transcript_15299.known	chr13	-	2990	15	FSM	ENSMUSG00000042167.7	ENSMUST00000048702.7	2990	15	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_4	92.51905484928	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGTTGAGGTGTTATTT	NA	False	NA	NA	False	AATAAA	-13	NA	93328791	93282790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_93284174_93285388_93285469_93287191_93287284_93291432_93291570_93296152_93296197_93304433_93304563_93304898_93304976_93308330_93308401_93311147_93311227_93312026_93312119_93312205_93312321_93320586_93320825_93322315_93322406_93322810_93322985_93328601
transcript_153.known	SIRV6	+	1088	9	FSM	SIRV6A	SIRV605	1088	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	8239.38325968637	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAGAGCAATCAACTCAC	NA	False	NA	NA	False	NA	NA	NA	1130	11331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845_2027_2470_2621_2740_2829_3106_3165_10724_10819_11031
transcript_1530.known	chr1	+	1894	9	FSM	ENSMUSG00000026150.15	ENSMUST00000078332.13	1894	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_6	190.780264637095	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	False	NA	13	True	AATAAA	-13	NA	82702610	82730111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82719538_82719698_82724803_82724864_82728240_82728326_82729305
transcript_15300.known	chr13	-	2467	8	FSM	ENSMUSG00000042118.8	ENSMUST00000015941.8	2467	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	2.60298102261266	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGTTTGTTGCGTTCTT	NA	False	NA	NA	False	NA	NA	NA	93810810	93792227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_93793653_93798809_93799039_93799653_93799837_93800181_93800330_93803081_93803274_93805762_93805855_93807920_93808054_93810745
transcript_15302.known	chr13	+	4038	8	FSM	ENSMUSG00000042082.8	ENSMUST00000091403.6	4038	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	3.27014946921703	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGCCTTGGACATGGGG	NA	False	NA	NA	False	AATAAA	-21	NA	93908137	94079524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_93908601_93926546_93926734_93930535_93930727_93944003_93944212_93998594_93998839_94016995_94017067_94075734_94075858_94076973
transcript_15304.nnic	chr13	+	576	5	Intergenic	novelGene_3	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	1.29903810567666	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATTTGTTTTGTTTTTTTA	NA	False	NA	NA	False	AAGAAA	-5	NA	94164332	94193287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Intergenic_chr13_+_94164528_94166182_94166256_94191410_94191535_94193006_94193109_94193205
transcript_15306.known	chr13	-	4259	9	FSM	ENSMUSG00000021687.15	ENSMUST00000022197.15	4259	9	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_5	9.45300878027732	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAATATAGTATAAAAGAGT	NA	False	NA	NA	False	ATTAAA	-30	NA	94422337	94337817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_94340672_94344643_94344762_94347084_94347187_94361402_94361563_94366221_94366351_94368579_94368689_94369589_94369689_94389500_94389579_94421727
transcript_15309.known	chr13	-	2177	1	FSM	ENSMUSG00000042857.4	ENSMUST00000221110.2	2177	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTCTCTGTGTGTCTTA	NA	False	NA	NA	False	TATAAA	-28	NA	94495431	94493254	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_94493300_94495400
transcript_15310.known	chr13	+	4021	27	FSM	ENSMUSG00000021686.7	ENSMUST00000022196.5	4021	27	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_8	45.9393251760748	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTCTCCTAATCCTTAC	NA	False	NA	9	True	AATAAA	-19	NA	94495467	94702825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_94495740_94527299_94527376_94531226_94531302_94539845_94539942_94540454_94540616_94545284_94545352_94554468_94554652_94576762_94576922_94580426_94580525_94582429_94582485_94582573_94582646_94584960_94585024_94587460_94587594_94591903_94592014_94598903_94599081_94608183_94608371_94609306_94609438_94613473_94613637_94616234_94616383_94619720_94619869_94630176_94630250_94638425_94638533_94664672_94664905_94668489_94668575_94679286_94679385_94684262_94684402_94702112
transcript_15316.known	chr13	+	633	5	FSM	ENSMUSG00000042043.7	ENSMUST00000220819.2	633	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	650.566820165308	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAATTTTCAGTTGGCCA	NA	False	NA	37	True	AATAAA	-37	NA	94925417	94979430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_94925511_94951618_94951693_94968867_94968974_94973615_94973703_94979157
transcript_15317.known	chr13	+	559	4	FSM	ENSMUSG00000042043.7	ENSMUST00000046644.7	559	4	0	0	0	0	multi-exon	FALSE	canonical	3	1242	junction_3	49.6185449202211	1566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAATTTTCAGTTGGCCA	NA	False	NA	37	True	AATAAA	-37	NA	94925417	94979430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_94925511_94968867_94968974_94973615_94973703_94979157
transcript_15318.nic	chr13	-	1006	4	ISM	ENSMUSG00000021684.18	ENSMUST00000162882.2	2060	9	12823	606	1010	167	3prime_fragment	TRUE	canonical	1	2	junction_3	2.44948974278318	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACTCAGTGACAAAACGAG	NA	False	NA	NA	False	AATAAA	-17	NA	95169751	95162443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_95162738_95164125_95164256_95166820_95166989_95169337
transcript_15319.known	chr13	+	1894	2	FSM	ENSMUSG00000041995.9	ENSMUST00000045909.8	1894	2	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCGGTGTTCTGCTTGCATG	NA	False	NA	38	True	NA	NA	NA	95461744	95474349	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_95461853_95472563
transcript_15320.known	chr13	-	3249	14	FSM	ENSMUSG00000021681.9	ENSMUST00000022189.9	3249	14	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_4	22.6835706778766	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTCTTTGTATTTGC	NA	False	NA	27	True	AATAAA	-14	NA	95511860	95487190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_95488211_95489254_95489355_95490457_95490586_95492900_95492984_95493704_95493871_95495217_95495320_95498976_95499029_95499344_95499457_95501188_95501511_95504887_95505077_95505904_95506067_95507264_95507468_95508048_95508152_95511353
transcript_15322.known	chr13	-	2741	2	FSM	ENSMUSG00000021678.10	ENSMUST00000022185.10	2741	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAACAAGTT	9826	False	NA	NA	False	AATAAA	-16	NA	95661735	95648239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_95650790_95661544
transcript_15323.known	chr13	-	3336	2	FSM	ENSMUSG00000048376.7	ENSMUST00000059193.7	3336	2	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCATGCTTGGTGTCTG	NA	False	NA	NA	False	AATAAA	-3	NA	95754995	95738310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_95741446_95754794
transcript_15324.known	chr13	-	2161	1	FSM	ENSMUSG00000114133.2	ENSMUST00000220449.2	2161	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCTAGCCAGAGCAATTAG	NA	False	NA	NA	False	NA	NA	NA	96217884	96215723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_96215700_96217900
transcript_15327.known	chr13	+	5183	13	FSM	ENSMUSG00000021671.10	ENSMUST00000099295.6	5183	13	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_9	14.0798812337163	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTCTCTGTACTGGAAA	NA	False	NA	NA	False	NA	NA	NA	96524801	96554245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_96525040_96526730_96526871_96528095_96528184_96529734_96529853_96530999_96531078_96533147_96533339_96535201_96535379_96537257_96537363_96538083_96538264_96539387_96539542_96540913_96541192_96547097_96547275_96550986
transcript_15331.nnic	chr13	-	872	5	NNC	ENSMUSG00000047117.14	novel	704	6	NA	NA	-126	-3916	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	2.04633819296811	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTTGTAAAGTGCATACG	NA	False	NA	NA	False	NA	NA	NA	96582651	96576367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_96576595_96577282_96577375_96578064_96578164_96580786_96580886_96582296
transcript_15332.known	chr13	-	4225	15	FSM	ENSMUSG00000021668.16	ENSMUST00000022172.12	4225	15	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_7	5.85191404236116	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTTATTGACTGTCATAT	NA	False	NA	NA	False	AATAAA	-20	NA	96678993	96617197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_96618763_96618965_96619000_96619998_96620914_96623315_96623488_96625689_96625787_96627444_96627478_96630336_96630504_96631915_96632041_96633110_96633351_96638026_96638181_96641018_96641151_96644719_96644873_96653146_96653267_96655536_96655696_96678834
transcript_15333.known	chr13	-	4425	20	FSM	ENSMUSG00000021670.15	ENSMUST00000022176.15	4425	20	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_19	35.2932314809179	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGTGTAAGCAGTGGCT	NA	False	NA	-5	True	AGTAAA	-22	NA	96807444	96785474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_96787142_96787517_96787673_96788363_96788523_96788603_96788745_96789165_96789337_96791323_96791430_96792057_96792216_96792361_96792521_96793070_96793266_96795090_96795267_96795378_96795627_96795724_96795886_96796401_96796519_96796625_96796733_96799536_96799643_96801269_96801355_96802317_96802406_96802620_96802733_96803028_96803217_96807318
transcript_15342.known	chr13	+	3157	21	FSM	ENSMUSG00000021666.17	ENSMUST00000161639.8	3157	21	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	31.6045487232455	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCCTAACAAATCTTAATT	NA	False	NA	NA	False	AATAAA	-25	NA	97274485	97312959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_97274568_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107
transcript_15347.known	chr13	+	1829	16	FSM	ENSMUSG00000021666.17	ENSMUST00000161913.8	1829	16	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	32.7972898609355	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTACATCTCACATATACA	NA	False	NA	NA	False	AATAAA	-19	NA	97274492	97304999	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_97274568_97278434_97278519_97279515_97279601_97282154_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773
transcript_1535.known	chr1	+	1645	8	FSM	ENSMUSG00000026150.15	ENSMUST00000160786.8	1645	8	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_5	134.32947615198	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGTATAAATGTAGTGTAT	NA	False	NA	-27	True	TTTAAA	-13	NA	82702660	82730071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82724803_82724864_82728240_82728326_82729305
transcript_15357.known	chr13	-	2700	6	FSM	ENSMUSG00000060739.9	ENSMUST00000073456.9	2700	6	0	0	0	0	multi-exon	FALSE	canonical	3	555	junction_1	171.768914533451	1170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTGTGGTCTAACAGT	NA	False	NA	NA	False	AATAAA	-14	NA	97274445	97265931	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_97267737_97268350_97268544_97270046_97270227_97271801_97271953_97272028_97272217_97274262
transcript_15360.known	chr13	-	2106	3	FSM	ENSMUSG00000060739.9	ENSMUST00000224980.2	2106	3	0	0	0	0	multi-exon	FALSE	canonical	3	818	junction_2	122.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAGGAAAAAGAAGGCA	NA	False	NA	NA	False	NA	NA	NA	97274381	97270153	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_97271953_97272028_97272217_97274262
transcript_15361.known	chr13	-	1030	1	FSM	ENSMUSG00000057762.7	ENSMUST00000071118.7	1030	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTAACGGCCGGGCATGGT	NA	False	NA	NA	False	NA	NA	NA	97235745	97234715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_97234700_97235700
transcript_15362.known	chr13	+	3089	21	FSM	ENSMUSG00000021666.17	ENSMUST00000022170.8	3089	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	52.3769033067057	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCCTAACAAATCTTAATT	NA	False	NA	NA	False	AATAAA	-25	NA	97274547	97312959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_97274568_97278434_97278519_97279515_97279601_97282160_97282213_97282727_97282826_97285816_97285943_97286832_97286922_97289735_97289825_97291697_97291759_97291928_97292109_97296594_97296676_97297526_97297676_97299359_97299501_97299582_97299683_97301518_97301706_97304773_97304851_97307993_97308133_97309019_97309200_97309447_97309564_97311369_97311553_97312107
transcript_15363.known	chr13	-	1905	14	FSM	ENSMUSG00000021665.10	ENSMUST00000022169.10	1905	14	0	0	0	0	multi-exon	FALSE	canonical	3	2035	junction_5	137.076923076923	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGCTGCCCTGTGTGGAT	NA	False	NA	1	True	AATAAA	-27	NA	97334865	97312838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_97313098_97313304_97313410_97313563_97313655_97314387_97314563_97315851_97315925_97317589_97317677_97318340_97318522_97320184_97320315_97322075_97322178_97325469_97325581_97325813_97325861_97327720_97327787_97330629_97330776_97334533
transcript_1537.nic	chr1	+	1074	7	NIC	ENSMUSG00000026150.15	novel	1715	8	NA	NA	-8	53	combination_of_known_junctions	FALSE	canonical	3	326	junction_5	73.6809940818451	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTGTCTTTGCATCA	NA	False	NA	17	True	TATAAA	-17	NA	82702602	82729502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82728240_82728326_82729305
transcript_15372.nnic	chr13	+	390	4	NNC	ENSMUSG00000078952.10	novel	492	3	NA	NA	48	908	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	86.5139680437019	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGCTTGTATTCCATCTG	NA	False	NA	4	True	AATACA	-15	NA	97619256	97627116	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_97619286_97619456_97619541_97625686_97625857_97627009
transcript_15373.nnic	chr13	+	458	4	NNC	ENSMUSG00000078952.10	novel	492	3	NA	NA	50	1886	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	87.5912222898061	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAAGTTCTTCGTCTTAA	NA	False	NA	NA	False	AATAAA	-18	NA	97619258	97628094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_97619286_97619456_97619541_97625686_97625857_97627917
transcript_15374.nnic	chr13	+	1931	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	-19	-932	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_3	70.6745278646337	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTTTTGTCTGTGTAGC	NA	False	NA	19	True	AAAAAG	-23	NA	97619189	97632583	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_97619286_97619456_97619541_97629663_97629744_97630912
transcript_15375.nnic	chr13	+	2496	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	-19	-367	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_3	70.6745278646337	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGATGCAATGTCCTT	NA	False	NA	5	True	NA	NA	NA	97619189	97633148	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_97619286_97619456_97619541_97629663_97629744_97630912
transcript_15377.nnic	chr13	+	2425	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	-19	-933	at_least_one_novel_splicesite	FALSE	canonical	3	166	junction_3	11.8602979164381	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGTTTTGTCTGTGTAG	NA	False	NA	18	True	AAAAAG	-22	NA	97619189	97632582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_97619286_97619456_97619541_97629663_97630239_97630912
transcript_15379.nnic	chr13	+	3358	4	NNC	ENSMUSG00000078952.10	novel	2764	3	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	3	166	junction_3	11.8602979164381	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	21	True	AATAAA	-18	NA	97619189	97633515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_97619286_97619456_97619541_97629663_97630239_97630912
transcript_1538.nic	chr1	+	1683	7	NIC	ENSMUSG00000026150.15	novel	1715	8	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	326	junction_5	73.6809940818451	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	False	NA	13	True	AATAAA	-13	NA	82702602	82730111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_82702806_82704948_82705058_82706936_82707158_82708833_82709004_82713139_82713229_82728240_82728326_82729305
transcript_15383.known	chr13	+	2764	3	FSM	ENSMUSG00000078952.10	ENSMUST00000179324.2	2764	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	70.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCGAACTCAAGACCTC	NA	False	NA	21	True	AATAAA	-18	NA	97619208	97633515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_97619286_97619456_97619541_97630912
transcript_15386.known	chr13	-	561	1	FSM	ENSMUSG00000069117.5	ENSMUST00000074072.5	561	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	341	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACCAATCAGATTCGAGA	NA	False	NA	NA	False	AATAAA	-33	NA	97897140	97896579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_97896600_97897100
transcript_15387.known	chr13	-	4120	13	FSM	ENSMUSG00000041747.4	ENSMUST00000040972.4	4120	13	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_4	38.6584042896525	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTCCCTTGATCATGA	NA	False	NA	-53	True	AATGAA	-15	NA	98399549	98383352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_98385885_98387079_98387139_98387292_98387427_98388436_98388539_98389252_98389403_98390151_98390237_98391426_98391563_98393608_98393735_98394343_98394523_98395612_98395798_98395881_98395975_98397306_98397479_98399382
transcript_15394.known	chr13	+	1755	9	FSM	ENSMUSG00000021661.17	ENSMUST00000022164.16	1755	9	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	23.3559414282533	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399749	98410426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98409885
transcript_15396.nnic	chr13	+	1955	9	NNC	ENSMUSG00000021661.17	novel	1755	9	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	62.5658403204177	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399562	98410426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_98399985_98402658_98403054_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98409885
transcript_15398.known	chr13	+	2328	8	FSM	ENSMUSG00000021661.17	ENSMUST00000123924.8	2328	8	0	0	0	0	multi-exon	TRUE	canonical	3	142	junction_1	24.7839645327212	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399701	98410426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_98399985_98402658_98403041_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279
transcript_15400.known	chr13	+	1476	8	FSM	ENSMUSG00000021661.17	ENSMUST00000226100.2	1476	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	57.4651624722247	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399646	98410426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_98399985_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279_98409361_98409885
transcript_15402.known	chr13	+	1949	7	FSM	ENSMUSG00000021661.17	ENSMUST00000091356.11	1949	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	62.0510542483634	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGATTATATGCTTGTC	NA	False	NA	14	True	AATAAA	-24	NA	98399698	98410426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_98399985_98403823_98403983_98404937_98405004_98407562_98407661_98408161_98408288_98408733_98408801_98409279
transcript_15403.known	chr13	+	1887	2	FSM	ENSMUSG00000021661.17	ENSMUST00000223606.2	1887	2	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAAGTGAGTTACTGT	NA	False	NA	NA	False	ATTAAA	-18	NA	98399664	98404225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_98399985_98402658
transcript_15404.known	chr13	-	1091	6	FSM	ENSMUSG00000021660.15	ENSMUST00000022163.15	1091	6	0	0	0	0	multi-exon	FALSE	canonical	3	579	junction_5	2432.68485422999	287	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTTATCATTTTACTTA	NA	False	NA	-16	True	AATAAA	-37	NA	98453475	98446403	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453132
transcript_15405.known	chr13	-	888	6	FSM	ENSMUSG00000021660.15	ENSMUST00000152704.8	888	6	0	0	0	0	multi-exon	FALSE	canonical	3	5972	junction_2	361.40138350593	9892	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTATCATTTTACTT	NA	False	NA	-17	True	AATAAA	-36	NA	98453514	98446404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737_98452807_98453373
transcript_15406.known	chr13	-	780	5	FSM	ENSMUSG00000021660.15	ENSMUST00000134542.2	780	5	0	0	0	0	multi-exon	FALSE	canonical	3	5972	junction_2	394.186821190156	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGGAATAAAGTTTGGAAAG	NA	False	NA	-62	True	AATAAA	-13	NA	98452884	98446449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_98446710_98447488_98447546_98449599_98449802_98450146_98450261_98452737
transcript_15408.known	chr13	-	1161	4	FSM	ENSMUSG00000052485.8	ENSMUST00000064347.8	1161	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTTCCCATTTTTCTG	9052	False	NA	NA	False	AATAAA	-16	NA	98831342	98822742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_98823025_98824855_98824992_98828511_98829226_98831313
transcript_15409.nnic	chr13	-	747	4	NNC	ENSMUSG00000114689.2	novel	570	2	NA	NA	-1194	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_3	27.8846831711525	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCTCCATCTTTGAACA	NA	False	NA	-6	True	ATTAAA	-23	NA	98854212	98849581	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_98850076_98852942_98853093_98853205_98853218_98854121
transcript_1541.known	chr1	+	1358	5	FSM	ENSMUSG00000026150.15	ENSMUST00000160972.8	1358	5	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_3	77.3090389281874	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGTCTATGGAAAGATT	NA	False	NA	13	True	AATAAA	-13	NA	82706949	82730111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_82707158_82708833_82709004_82713139_82713229_82728240_82728326_82729305
transcript_15411.nnic	chr13	-	1643	3	NNC	ENSMUSG00000114689.2	novel	570	2	NA	NA	-1186	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	22.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCTCCATCTTTGAACA	NA	False	NA	-6	True	ATTAAA	-23	NA	98854204	98849581	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_98850076_98852942_98853093_98853205
transcript_15413.nnic	chr13	-	735	3	NNC	ENSMUSG00000114689.2	novel	570	2	NA	NA	-1194	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_2	24.5	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCCTCCATCTTTGAACA	NA	False	NA	-6	True	ATTAAA	-23	NA	98854212	98849581	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_98850076_98852942_98853093_98854121
transcript_15415.nnic	chr13	-	1514	16	NNC	ENSMUSG00000041685.17	novel	1586	15	NA	NA	-4	411	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	103.613169476128	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTCTTCATTAATATTTT	NA	False	NA	NA	False	NA	NA	NA	98951720	98887331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_98887532_98888414_98888440_98888841_98888854_98891587_98891762_98892073_98892134_98899339_98899365_98900197_98900271_98901012_98901058_98912328_98912426_98913896_98913996_98921283_98921389_98925870_98926024_98926239_98926382_98932800_98932876_98942813_98942906_98951583
transcript_15418.known	chr13	-	8453	24	FSM	ENSMUSG00000009470.18	ENSMUST00000109401.8	8453	24	0	0	0	0	multi-exon	TRUE	canonical	3	248	junction_23	63.8650810868555	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCACTCTTGATTTT	NA	False	NA	-7	True	AATAAA	-15	NA	99062892	98975526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99062758
transcript_15419.nic	chr13	-	3412	24	NIC	ENSMUSG00000009470.18	novel	8445	24	NA	NA	7	3025	combination_of_known_junctions	FALSE	canonical	3	224	junction_23	67.7519382879703	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCACCCTGTGACATGCC	NA	False	NA	-13	True	AATAAA	-21	NA	99027541	98980540	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_98981129_98982928_98983072_98983835_98983911_98985662_98985763_98986615_98986692_98989362_98989459_98989907_98990007_98991650_98991739_98991819_98992087_98993396_98993484_98994893_98995066_98996270_98996497_98997148_98997302_99000215_99000385_99000935_99000997_99001476_99001596_99003553_99003677_99006747_99006830_99012111_99012246_99015127_99015235_99021022_99021173_99024973_99025050_99027184_99027299_99027434
transcript_1542.nic	chr1	+	2282	13	NIC	ENSMUSG00000026159.14	novel	856	6	NA	NA	68	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	134.385535762679	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTTTTTGTGTTCTTG	NA	False	NA	15	True	AATAAA	-15	NA	82817861	82873396	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_82818008_82836076_82836171_82848405_82848522_82853008_82853172_82853891_82854046_82857728_82857849_82859948_82860159_82860901_82861083_82863831_82863909_82864095_82864189_82871144_82871304_82872196_82872289_82872719
transcript_15421.known	chr13	+	447	1	FSM	ENSMUSG00000062461.8	ENSMUST00000080866.8	447	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCACACCGGAGGTTAAT	NA	False	NA	NA	False	NA	NA	NA	99040731	99041178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_99040700_99041200
transcript_15422.known	chr13	+	1723	2	FSM	ENSMUSG00000097848.3	ENSMUST00000181742.2	1723	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGACGACTGGTCTTTAGC	6940	False	NA	NA	False	NA	NA	NA	99237213	99244088	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_99237334_99242485
transcript_15424.nnic	chr13	-	1785	11	NNC	ENSMUSG00000021650.8	novel	1704	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	145.919292761444	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGGGTTGTGTTTCTTTTC	NA	False	NA	-11	True	AATAAA	-16	NA	99481213	99456154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_99456902_99458068_99458183_99462131_99462213_99463145_99463221_99466459_99466574_99468943_99469036_99469395_99469475_99473170_99473289_99476408_99476539_99479820_99479914_99481071
transcript_15427.known	chr13	-	1704	10	FSM	ENSMUSG00000021650.8	ENSMUST00000022153.8	1704	10	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_5	28.5894740191448	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGGGTTGTGTTTCTTTTC	NA	False	NA	-11	True	AATAAA	-16	NA	99481213	99456154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_99456902_99458068_99458183_99463145_99463221_99466459_99466574_99468943_99469036_99469395_99469475_99473170_99473289_99476408_99476539_99479820_99479914_99481071
transcript_15432.known	chr13	+	1849	11	FSM	ENSMUSG00000041632.8	ENSMUST00000052249.7	1849	11	0	0	0	0	multi-exon	FALSE	canonical	3	414	junction_10	37.2860563750043	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGTGGTGTGATTT	NA	False	NA	20	True	AATAAA	-15	NA	99481293	99552070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_99481384_99484839_99484918_99499472_99499544_99501732_99501792_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
transcript_15435.nnic	chr13	+	1761	9	NIC	ENSMUSG00000041632.8	novel	1849	11	NA	NA	-42	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_2	145.098027209194	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGTGGTGTGATTT	NA	False	NA	20	True	AATAAA	-15	NA	99481251	99552070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_99481384_99484839_99484918_99536769_99536885_99540011_99540091_99541495_99541612_99546316_99546420_99547785_99547929_99548702_99548874_99551246
transcript_1544.known	chr1	-	3632	13	FSM	ENSMUSG00000036766.13	ENSMUST00000049126.13	3632	13	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_12	3.60169713082905	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTTGTCTCATTCTTTAA	NA	False	NA	1	True	AATAAA	-19	NA	84673942	84347559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_84348597_84361505_84361753_84373335_84373468_84383659_84383774_84396369_84396493_84423115_84423341_84454065_84454180_84472451_84472606_84512572_84512719_84558376_84558544_84560724_84560820_84563033_84563343_84673173
transcript_15440.nic	chr13	-	2224	5	ISM	ENSMUSG00000052727.7	ENSMUST00000064762.6	11808	7	-260	12855	-260	0	5prime_fragment	FALSE	canonical	3	33	junction_3	7.32717544487642	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GTAAAAAAGGAAATAAAGAC	NA	False	NA	-20	True	NA	NA	NA	99653308	99570808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_99572210_99578141_99578283_99580721_99580805_99644615_99644718_99652811
transcript_15441.known	chr13	-	2150	3	FSM	ENSMUSG00000052727.7	ENSMUST00000224702.2	2150	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	1.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAGCGAAGAAAGAAGAGTC	4690	False	NA	72	True	NA	NA	NA	99580975	99570454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_99572210_99578141_99578283_99580721
transcript_15445.known	chr13	-	1364	2	FSM	ENSMUSG00000052727.7	ENSMUST00000223820.2	1364	2	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AATAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	99653026	99643568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_99644718_99652811
transcript_15447.known	chr13	+	2481	2	FSM	ENSMUSG00000097027.3	ENSMUST00000181939.3	2481	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAGAATAAGTAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	99653136	99658268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_99653367_99656017
transcript_15448.known	chr13	-	2123	17	FSM	ENSMUSG00000021646.10	ENSMUST00000022148.7	2123	17	0	0	0	0	multi-exon	FALSE	canonical	2	186	junction_5	41.3428878405948	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTAGGGTTGTTGAGA	669	False	NA	-6	True	AATAAA	-15	NA	100152147	100085040	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_100085465_100088663_100088750_100090643_100090759_100091122_100091280_100095312_100095380_100097407_100097485_100100315_100100389_100104148_100104245_100104341_100104442_100108286_100108352_100112916_100113031_100125043_100125157_100126755_100126884_100127719_100127822_100130074_100130160_100136757_100136825_100151893
transcript_15449.nnic	chr13	-	2082	17	NNC	ENSMUSG00000021646.10	novel	2123	17	NA	NA	-57	0	at_least_one_novel_splicesite	FALSE	canonical	2	51	junction_3	69.7078725826574	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTAGGGTTGTTGAGA	612	False	NA	-6	True	AATAAA	-15	NA	100152204	100085040	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_100085465_100088663_100088750_100090643_100090759_100091220_100091280_100095312_100095380_100097407_100097485_100100315_100100389_100104148_100104245_100104341_100104442_100108286_100108352_100112916_100113031_100125043_100125157_100126755_100126884_100127719_100127822_100130074_100130160_100136757_100136825_100151893
transcript_15452.known	chr13	-	9921	39	FSM	ENSMUSG00000049658.14	ENSMUST00000038104.12	9921	39	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_24	12.2627061132051	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTTGTCCTTTTCAAA	6759	False	NA	0	True	AATAAA	-18	NA	100240578	100154501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_100156919_100160107_100160364_100161904_100162164_100163942_100163980_100167292_100167498_100171591_100171779_100172286_100172348_100174267_100174446_100174629_100174781_100177929_100178091_100178567_100178794_100180266_100180360_100180779_100180817_100183233_100183348_100186143_100186538_100187452_100187638_100187855_100188064_100189480_100189627_100191603_100191812_100192666_100192849_100195233_100195454_100195996_100196179_100196801_100198015_100200866_100200998_100202384_100202575_100203972_100204065_100206584_100206745_100210894_100211054_100212012_100212152_100214339_100214622_100215166_100215308_100220648_100220704_100225860_100225956_100228701_100228836_100229921_100230054_100234045_100234106_100234993_100235104_100235460_100235738_100240134
transcript_15453.known	chr13	+	601	3	FSM	ENSMUSG00000021643.16	ENSMUST00000022145.15	601	3	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	3	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTGAATATTATTTTTAT	NA	False	NA	NA	False	AATAAA	-25	NA	100244519	100250746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_100244738_100245530_100245640_100250472
transcript_15458.known	chr13	+	1222	9	FSM	ENSMUSG00000021645.17	ENSMUST00000022147.15	1222	9	0	0	0	0	multi-exon	TRUE	canonical	3	544	junction_6	97.8154352594722	790	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCTTGACTTTATAGATA	NA	False	NA	17	True	AATAAA	-13	NA	100261359	100274198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_100261474_100263094_100263167_100263377_100263498_100264312_100264514_100264722_100264870_100267587_100267684_100268863_100268975_100272196_100272248_100273888
transcript_1546.known	chr1	-	9632	41	FSM	ENSMUSG00000026219.15	ENSMUST00000027421.13	9632	41	0	0	0	0	multi-exon	TRUE	canonical	3	439	junction_40	206.047323144466	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGTTACTTTATGTACA	7894	False	NA	-8	True	AATAAA	-22	NA	84817025	84698909	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_84702536_84703116_84703221_84703456_84703552_84703923_84704038_84705845_84706011_84708252_84708418_84709343_84709499_84709733_84709849_84714702_84714802_84716398_84716556_84717234_84717378_84719907_84720060_84720814_84720943_84721540_84721741_84722398_84722473_84722733_84722907_84724898_84725051_84726878_84727071_84728078_84728221_84729259_84729435_84729600_84729702_84731991_84732200_84735137_84735257_84735442_84735672_84736694_84736849_84738483_84738641_84738731_84738850_84739584_84739751_84739839_84739909_84741048_84741211_84741559_84741653_84743700_84743797_84743879_84743916_84746303_84746453_84754037_84754134_84755144_84755229_84760547_84760685_84763811_84763918_84771245_84772049_84792543_84792691_84816949
transcript_15463.nic	chr13	-	2025	17	NIC	ENSMUSG00000021639.18	novel	1630	18	NA	NA	-34	449	combination_of_known_junctions	FALSE	canonical	3	19	junction_1	76.8251871133419	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACTGTCTTCTTAAAACAA	NA	False	NA	NA	False	NA	NA	NA	100629121	100596276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_100596929_100605422_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
transcript_15468.known	chr13	-	1656	16	FSM	ENSMUSG00000021639.18	ENSMUST00000066984.14	1656	16	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_10	29.724213848122	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCAGTTTTTTTTCATTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	100629069	100605087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628964
transcript_1547.known	chr1	+	901	4	FSM	ENSMUSG00000073633.10	ENSMUST00000097672.4	901	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	27.3536509852382	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTCTGGTTTGTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	84817561	84878208	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_84817690_84858812_84858922_84874210_84874384_84877717
transcript_15472.nic	chr13	-	1494	16	ISM	ENSMUSG00000021639.18	ENSMUST00000145266.8	1630	18	-75	8590	-39	0	5prime_fragment	FALSE	canonical	3	30	junction_15	76.4776219992925	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATGAAAGCACTTTGA	NA	False	NA	-19	True	AATAAA	-32	NA	100628921	100605315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_100605535_100607386_100607427_100612977_100613081_100613611_100613719_100615698_100615763_100617047_100617156_100617511_100617600_100617719_100617811_100619445_100619552_100622578_100622634_100622981_100623033_100625356_100625444_100625643_100625681_100625990_100626069_100626583_100626673_100628750
transcript_1548.known	chr1	+	1248	6	FSM	ENSMUSG00000072109.12	ENSMUST00000159087.8	1248	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.4	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTGATCAAGTTCTGGT	NA	False	NA	NA	False	ATTAAA	-16	NA	85084374	85091495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_85084412_85089210_85089288_85089529_85089681_85089912_85090033_85090171_85090307_85090767
transcript_15481.known	chr13	-	4052	9	FSM	ENSMUSG00000021638.13	ENSMUST00000069756.11	4052	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_8	12.8640730330638	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTAGTCCACTGTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	100689006	100633014	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_100635424_100639443_100639486_100642658_100642831_100647919_100648136_100651534_100651684_100671470_100671633_100675768_100676442_100677575_100677693_100688894
transcript_15482.known	chr13	-	3061	7	FSM	ENSMUSG00000021636.16	ENSMUST00000022137.14	3061	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	4.71404520791032	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTGCTCCTTATT	NA	False	NA	-1	True	ATTAAA	-18	NA	100753479	100732464	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_100733920_100734309_100734361_100736968_100737141_100737396_100737546_100744284_100744321_100747940_100749093_100753433
transcript_15484.known	chr13	-	2839	17	FSM	ENSMUSG00000021635.15	ENSMUST00000022136.14	2839	17	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_16	42.8397723354128	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTTCTTCTTATCCTTT	NA	False	NA	-6	True	ATTAAA	-15	NA	100787559	100753671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787329
transcript_15485.known	chr13	-	2392	17	FSM	ENSMUSG00000021635.15	ENSMUST00000177848.3	2392	17	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_16	17.1335516968899	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTCAGTGCTTAGTATTTA	NA	False	NA	NA	False	AGTAAA	-13	NA	100787555	100753986	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_100754441_100755601_100755660_100759305_100759427_100760927_100761075_100764017_100764165_100764267_100764354_100765907_100766091_100767563_100767676_100769389_100769460_100769703_100769830_100769958_100770012_100770370_100770508_100773449_100773607_100780027_100780112_100781498_100781754_100786185_100786290_100787457
transcript_1549.known	chr1	+	827	5	FSM	ENSMUSG00000072109.12	ENSMUST00000162453.8	827	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGGACTGAGTTCATTCTC	NA	False	NA	NA	False	NA	NA	NA	85084364	85091184	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_85084412_85089210_85089288_85089529_85089681_85090171_85090307_85090767
transcript_15495.known	chr13	+	1298	5	FSM	ENSMUSG00000078941.10	ENSMUST00000022135.15	1298	5	0	0	0	0	multi-exon	FALSE	canonical	3	650	junction_4	426.823734110464	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACATCTCTTTAATAGTA	NA	False	NA	37	True	AATAAA	-14	NA	100787486	100802867	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_100787954_100790698_100790792_100800402_100800462_100800558_100800705_100802334
transcript_155.known	SIRV6	+	1435	9	FSM	SIRV6A	SIRV601	1435	9	0	0	0	0	multi-exon	TRUE	canonical	3	2056	junction_3	7596.8547757855	1176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACCGGGAGTATACTT	NA	False	NA	NA	False	NA	NA	NA	1000	11826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6_+_1187_1468_1535_1640_1736_2470_2621_2740_2829_3106_3165_10724_10819_11031_11109_11205
transcript_1550.known	chr1	+	2017	4	FSM	ENSMUSG00000072109.12	ENSMUST00000162353.8	2017	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTAATCTCTGGGTATTTC	NA	False	NA	NA	False	NA	NA	NA	85083666	85091753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_85084412_85089529_85089681_85090171_85090307_85090767
transcript_15504.known	chr13	+	1184	3	FSM	ENSMUSG00000078941.10	ENSMUST00000190729.2	1184	3	0	0	0	0	multi-exon	FALSE	canonical	3	1279	junction_2	251.5	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTGGTACTTTGGCAG	NA	False	NA	NA	False	AATAAA	-19	NA	100787887	100792566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_100787954_100790698_100790792_100791541
transcript_15506.known	chr13	+	1230	3	FSM	ENSMUSG00000052293.15	ENSMUST00000167256.8	1230	3	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_1	554	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCTTGGTACTTTGGCAGT	NA	False	NA	NA	False	AATAAA	-20	NA	100788114	100792567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_100788226_100790698_100790792_100791541
transcript_15508.known	chr13	+	778	3	FSM	ENSMUSG00000052293.15	ENSMUST00000185767.7	778	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	620	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCAAGTACTCCCACCCT	NA	False	NA	NA	False	NA	NA	NA	100788091	100792023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_100788295_100790698_100790792_100791541
transcript_15510.known	chr13	+	824	3	FSM	ENSMUSG00000052293.15	ENSMUST00000187792.2	824	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	631	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTTTCAACTAAAGTAGG	NA	False	NA	NA	False	NA	NA	NA	100788132	100792068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_100788337_100790698_100790792_100791541
transcript_15511.known	chr13	+	452	2	FSM	ENSMUSG00000078941.10	ENSMUST00000185901.2	452	2	0	0	0	0	multi-exon	FALSE	canonical	3	1782	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCTGAATATGAAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	100787869	100791066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_100787954_100790698
transcript_15512.known	chr13	+	2413	12	FSM	ENSMUSG00000048924.15	ENSMUST00000057325.15	2413	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	5.01073228346206	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAGTTTCAATGTCTCTT	NA	False	NA	5	True	TATAAA	-18	NA	100806280	100833748	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_100806360_100814411_100814711_100815824_100815884_100818288_100818376_100819274_100819353_100820793_100820880_100823616_100823700_100826826_100826928_100828802_100828911_100830044_100830217_100830877_100831009_100832618
transcript_15519.known	chr13	-	1988	12	FSM	ENSMUSG00000069089.9	ENSMUST00000091299.8	1988	12	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_3	44.8636133370117	844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTGTTTATGGACTATT	NA	False	NA	NA	False	CATAAA	-17	NA	100867447	100839138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100854079_100854191_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
transcript_1552.known	chr1	+	2230	6	FSM	ENSMUSG00000026223.16	ENSMUST00000027425.16	2230	6	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_3	14.9853261559434	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAAAACCCAAAACCT	NA	False	NA	-8	True	NA	NA	NA	85822001	85836396	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_85822511_85830730_85830872_85832934_85833124_85834142_85834254_85834728_85834880_85835267
transcript_15525.known	chr13	-	1159	11	FSM	ENSMUSG00000069089.9	ENSMUST00000225990.2	1159	11	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_6	227.413741889095	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGATTTATGATTAGAG	NA	False	NA	-29	True	AATAAA	-3	NA	100867408	100839817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_100840015_100840898_100841047_100842874_100843025_100846581_100846669_100848004_100848105_100853008_100853128_100855809_100855879_100857093_100857162_100859187_100859222_100866965_100867026_100867281
transcript_1554.known	chr1	+	4696	22	FSM	ENSMUSG00000062590.14	ENSMUST00000135973.8	4696	22	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_21	14.7732675162462	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTAAGGCTAAAAGGGGG	NA	False	NA	NA	False	NA	NA	NA	86082505	86187549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535_86104635_86113826_86113862_86116598_86116711_86118731_86118825_86121998_86122090_86124040_86124165_86125963_86126104_86127559_86127637_86130211_86130287_86135674_86135766_86140771_86140828_86172287_86172393_86179998_86180115_86184947
transcript_15555.known	chr13	-	571	4	FSM	ENSMUSG00000061474.12	ENSMUST00000078573.5	571	4	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	492.52884856287	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCACAAGCTGCCCTGTAC	NA	False	NA	NA	False	NA	NA	NA	100881165	100872584	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_100872782_100875521_100875704_100877675_100877740_100881037
transcript_15556.known	chr13	-	469	5	FSM	ENSMUSG00000061474.12	ENSMUST00000076037.9	469	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	598.6340179943	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGTGAGCAGAATGAAGT	NA	False	NA	NA	False	AATAAA	-3	NA	100881096	100872659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_100872782_100875521_100875710_100877675_100877740_100880296_100880333_100881037
transcript_15557.known	chr13	-	1251	9	FSM	ENSMUSG00000045273.9	ENSMUST00000075550.4	1251	9	0	0	0	0	multi-exon	TRUE	canonical	3	285	junction_6	26.2865816530031	362	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCAGGACTGGAGAGATG	NA	False	NA	1	True	AATAAA	-41	NA	100912407	100896181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_100896703_100898268_100898433_100900057_100900110_100900676_100900741_100903332_100903390_100907702_100907778_100908162_100908212_100909233_100909290_100912194
transcript_1556.known	chr1	+	2160	21	FSM	ENSMUSG00000062590.14	ENSMUST00000131412.8	2160	21	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_14	12.2982722363753	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCATTCTCTTTATTGT	NA	False	NA	8	True	AATAAA	-13	NA	86082536	86180211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535_86104635_86113826_86113862_86116598_86116711_86118731_86118825_86121998_86122090_86124040_86124165_86125963_86126104_86127559_86127637_86130211_86130287_86135674_86135766_86140771_86140828_86172287_86172393_86179998
transcript_15562.known	chr13	-	2489	9	FSM	ENSMUSG00000041431.17	ENSMUST00000072119.15	2489	9	0	0	0	0	multi-exon	FALSE	canonical	3	2476	junction_6	457.563588477055	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAAGGTCGGCCAACTCCC	NA	False	NA	76	True	AATAAA	-19	NA	100923078	100915157	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100919972_100920156_100921964_100922127_100922240_100922412_100922889
transcript_15563.known	chr13	-	2140	8	FSM	ENSMUSG00000041431.17	ENSMUST00000091295.14	2140	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	1285.22781272903	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATTTGCCCTTTTGACTG	NA	False	NA	-6	True	AATAAA	-28	NA	100922994	100915239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_100916294_100916529_100916641_100917283_100917425_100917665_100917903_100918132_100918292_100921964_100922127_100922240_100922412_100922889
transcript_15564.known	chr13	-	3934	12	FSM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_3	30.0305629441708	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCTTCAGTTTCTATTCC	9992	False	NA	3	True	AATAAA	-21	NA	103911116	103878119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_103880225_103881292_103881438_103885266_103885363_103888901_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
transcript_15568.nic	chr13	-	1722	10	ISM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	-38	7147	-38	3709	5prime_fragment	FALSE	canonical	3	148	junction_1	32.4257937260668	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGGTGGATGCGTCTGCTG	9995	False	NA	NA	False	AAGAAA	-28	NA	103911154	103885266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_103885363_103888901_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
transcript_15569.nic	chr13	-	2572	9	ISM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	59	9739	57	1117	5prime_fragment	FALSE	canonical	3	167	junction_7	26.6760074786314	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAATTGTAGTGTTCATTG	10013	False	NA	NA	False	AATAAA	-3	NA	103911057	103887858	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
transcript_15570.nic	chr13	-	2450	9	ISM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	74	9846	72	1010	5prime_fragment	FALSE	canonical	3	167	junction_7	26.6760074786314	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTTTTTCATTGCATAT	9991	False	NA	NA	False	AATAAA	-20	NA	103911042	103887965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
transcript_15571.nic	chr13	-	1730	9	ISM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	50	10590	48	266	5prime_fragment	FALSE	canonical	3	167	junction_7	26.6760074786314	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCTGTTTCTGTTAATC	10004	False	NA	NA	False	NA	NA	NA	103911066	103888709	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
transcript_15572.nic	chr13	-	1477	9	ISM	ENSMUSG00000032621.9	ENSMUST00000074616.7	3934	12	-38	10931	-38	0	5prime_fragment	FALSE	canonical	3	167	junction_7	26.6760074786314	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GACAAAGAAAAGGAGAAGGA	9995	False	NA	-78	True	GATAAA	-37	NA	103911154	103889050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_103889211_103889532_103889653_103894693_103894809_103895676_103895808_103896923_103897103_103897537_103897703_103900389_103900515_103905824_103905959_103910806
transcript_15573.known	chr13	-	4162	13	FSM	ENSMUSG00000021710.12	ENSMUST00000109315.5	4162	13	0	0	0	0	multi-exon	TRUE	canonical	3	279	junction_1	22.4276614920058	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATGAGCTCACAGTACTT	NA	False	NA	-13	True	AATAAA	-19	NA	104246122	104159564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_104161589_104172094_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
transcript_15574.known	chr13	-	2486	12	FSM	ENSMUSG00000021710.12	ENSMUST00000224945.2	2486	12	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_9	21.8272708341221	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATAGTCTCTGTGTTGTGA	NA	False	NA	NA	False	AAGAAA	-21	NA	104246094	104171718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_104172232_104173361_104173491_104173805_104173993_104182696_104182899_104187002_104187370_104189011_104189148_104195248_104195410_104195974_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
transcript_15582.nic	chr13	-	949	5	ISM	ENSMUSG00000021710.12	ENSMUST00000224945.2	2486	12	-80	24178	-52	8135	5prime_fragment	FALSE	canonical	3	279	junction_2	26.9756834945845	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTAGTATCAGCGCTG	NA	False	NA	NA	False	ATTAAA	-22	NA	104246174	104195896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_-_104196078_104198252_104198361_104205702_104205852_104209270_104209531_104245923
transcript_15583.known	chr13	+	3048	11	FSM	ENSMUSG00000042743.14	ENSMUST00000044385.14	3048	11	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_7	16.2775919595006	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATTTTCTTTCCAGTCA	NA	False	NA	NA	False	NA	NA	NA	104246248	104278243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_104246478_104247577_104247698_104254831_104254936_104257974_104258045_104260697_104260798_104265736_104265842_104268444_104268584_104268673_104268737_104271111_104271150_104271347_104271432_104276247
transcript_15586.known	chr13	-	3502	13	FSM	ENSMUSG00000021711.18	ENSMUST00000141557.8	3502	13	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_6	206.169209766045	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATAAAGGATCTGAGTCAA	NA	False	NA	NA	False	AATAAA	-18	NA	104314933	104278663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_104280754_104280911_104281060_104283751_104283853_104284591_104284791_104286557_104286692_104288672_104288691_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
transcript_15588.known	chr13	-	2342	13	FSM	ENSMUSG00000021711.18	ENSMUST00000022224.16	2342	13	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_6	196.200152905139	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGATTTTTTTCTTTC	NA	False	NA	-2	True	AATAAA	-42	NA	104314931	104279824	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104288672_104288691_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
transcript_15589.known	chr13	-	1689	13	FSM	ENSMUSG00000021711.18	ENSMUST00000179891.2	1689	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	299.157242191386	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAACATTTCTTTATTT	NA	False	NA	22	True	AAAACA	-33	NA	104314915	104280461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104290727_104290742_104290799_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
transcript_1559.known	chr1	+	1024	6	FSM	ENSMUSG00000062590.14	ENSMUST00000153389.8	1024	6	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_5	12.3870900537616	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAACGGGAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	86082507	86098053	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631
transcript_15591.nic	chr13	-	1746	12	NIC	ENSMUSG00000021711.18	novel	3502	13	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	331	junction_5	173.024051258921	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAACATTTCTTTATTT	NA	False	NA	22	True	AAAACA	-33	NA	104314993	104280461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_104280754_104280911_104281060_104283751_104283853_104284591_104284791_104286557_104286692_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
transcript_15592.known	chr13	-	3538	12	FSM	ENSMUSG00000021711.18	ENSMUST00000144060.8	3538	12	0	0	0	0	multi-exon	TRUE	canonical	3	331	junction_5	157.730704704606	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATCTGAGTCAACTATTAT	NA	False	NA	NA	False	AATAAA	-25	NA	104314977	104278656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_104280754_104280911_104281063_104283751_104283853_104284591_104284791_104286557_104286692_104290803_104290849_104291344_104291418_104297474_104297603_104303366_104303452_104304970_104305071_104306327_104306397_104314621
transcript_15597.known	chr13	-	909	4	FSM	ENSMUSG00000021711.18	ENSMUST00000142745.2	909	4	0	0	0	0	multi-exon	FALSE	canonical	3	679	junction_1	43.2229362980145	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCATCAGATCTCATTACAG	NA	False	NA	NA	False	NA	NA	NA	104314967	104303057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_104303452_104304970_104305071_104306327_104306397_104314621
transcript_15598.known	chr13	-	1609	2	FSM	ENSMUSG00000118537.2	ENSMUST00000133280.2	1609	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTGATTTTGTATTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	104314947	104310229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_104311513_104314621
transcript_1560.known	chr1	+	1733	9	FSM	ENSMUSG00000062590.14	ENSMUST00000153653.2	1733	9	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_5	11.8947204675015	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACTTGCCAGGCTGGTG	NA	False	NA	NA	False	TATAAA	-9	NA	86082540	86105423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_86082566_86084639_86084728_86087716_86087846_86090386_86090558_86092417_86092574_86097631_86097725_86099845_86099871_86101278_86101437_86104535
transcript_15601.known	chr13	+	3416	11	FSM	ENSMUSG00000021712.16	ENSMUST00000022225.12	3416	11	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_1	34.1	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTGACTGTGACGTATA	NA	False	NA	11	True	AATATA	-25	NA	104315304	104339525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_104315470_104317581_104317745_104321233_104321356_104323908_104324188_104324568_104324752_104326170_104326387_104328524_104328660_104334497_104334628_104335101_104335213_104336576_104336702_104337738
transcript_15621.known	chr13	-	2342	11	FSM	ENSMUSG00000021713.10	ENSMUST00000022226.6	2342	11	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_6	27.1368752806951	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATATACGTGTCAAATGAC	NA	False	NA	-13	True	TATAAA	-11	NA	104365330	104341631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_104342156_104343606_104343790_104344504_104344587_104346121_104346304_104350033_104350224_104353596_104353788_104356544_104356993_104359345_104359467_104359599_104359701_104361857_104361961_104365113
transcript_15624.known	chr13	+	1306	10	FSM	ENSMUSG00000021714.16	ENSMUST00000070761.10	1306	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_9	143.8340092684	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTTTATGTAAAATATTG	NA	False	NA	NA	False	AATAAA	-13	NA	104365462	104383641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104383074
transcript_15626.nic	chr13	+	1058	10	NIC	ENSMUSG00000021714.16	novel	1353	10	NA	NA	-62	0	combination_of_known_junctions	FALSE	canonical	3	409	junction_5	30.3205101100449	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	10	True	AATAAA	-21	NA	104365400	104386125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
transcript_15628.known	chr13	+	1353	10	FSM	ENSMUSG00000021714.16	ENSMUST00000224500.2	1353	10	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	127.2119840616	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	10	True	AATAAA	-21	NA	104365118	104386125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_104365511_104367236_104367388_104369165_104369223_104370654_104370741_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
transcript_1563.known	chr1	+	3112	25	FSM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	0	0	0	0	multi-exon	FALSE	canonical	3	1352	junction_6	102.249660417801	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTCAATCCACACACCA	NA	False	NA	NA	False	NA	NA	NA	85992340	86066873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435_86060523_86061359_86061507_86064684_86064839_86066801
transcript_15631.nnic	chr13	+	1094	10	NNC	ENSMUSG00000021714.16	novel	1353	10	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	135.125547474365	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCATAGTTTGTCTTTGTT	NA	False	NA	10	True	AATAAA	-21	NA	104365446	104386125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_104365593_104367236_104367388_104369165_104369223_104370654_104370728_104372686_104372734_104378696_104378780_104378862_104378962_104379253_104379381_104381785_104381840_104385868
transcript_15642.nnic	chr13	-	1960	15	NNC	ENSMUSG00000021715.13	novel	2071	14	NA	NA	-179	-191	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_14	171.280054714077	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTAACCATTTGCAGATTG	NA	False	NA	-11	True	AATAAA	-23	NA	104953829	104767838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194_104953331_104953618
transcript_15644.known	chr13	-	2071	14	FSM	ENSMUSG00000021715.13	ENSMUST00000022228.13	2071	14	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_8	84.1316241226496	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGCCTCCCGCTTTATT	NA	False	NA	1	True	AATAAA	-37	NA	104953461	104767647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_104768247_104794536_104794641_104797814_104797925_104856929_104857028_104929006_104929159_104932917_104932952_104933771_104933852_104938639_104938710_104940758_104940863_104941425_104941525_104943144_104943289_104944227_104944341_104947724_104947822_104953194
transcript_15650.known	chr13	+	2365	5	FSM	ENSMUSG00000021716.15	ENSMUST00000022230.15	2365	5	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	17.2536228079786	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATAAAAGTCATTTTTA	NA	False	NA	NA	False	AATAAA	-18	NA	104953684	104975782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_104953875_104963562_104963611_104969361_104969506_104970755_104970829_104973872
transcript_15657.known	chr13	-	1310	3	FSM	ENSMUSG00000042655.6	ENSMUST00000043061.5	1310	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTTTCAATGACAAATGTA	NA	False	NA	NA	False	AATAAA	-18	NA	105000401	104981790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_104982572_104994796_104994955_105000030
transcript_15658.known	chr13	-	3279	8	FSM	ENSMUSG00000021720.12	ENSMUST00000226044.2	3279	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.8070158058105	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGAGATGCATGCTTGT	NA	False	NA	NA	False	ATTAAA	-9	NA	105430910	105266508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_105268072_105304035_105304162_105317957_105318184_105383170_105383207_105386118_105387076_105388759_105388856_105407412_105407548_105430770
transcript_15659.known	chr13	-	4325	30	FSM	ENSMUSG00000042590.18	ENSMUST00000080856.14	4325	30	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	115.519794104579	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGACTTGTTGTCTGTT	NA	False	NA	-6	True	ATTAAA	-19	NA	107073466	106930946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_106932304_106948715_106948801_106959463_106959560_106978596_106978719_106983853_106983968_106984748_106984845_106993245_106993327_106993736_106993817_106997368_106997446_107002372_107002489_107007182_107007297_107011998_107012116_107012746_107012788_107013442_107013477_107016120_107016248_107019349_107019456_107020033_107020082_107023174_107023266_107025870_107025915_107028123_107028277_107028930_107029124_107032312_107032384_107033723_107033773_107035426_107035486_107037192_107037326_107046707_107046912_107047251_107047325_107056031_107056133_107061520_107061665_107073267
transcript_15664.nic	chr13	-	2665	10	NIC	ENSMUSG00000042590.18	novel	2484	22	NA	NA	-2	-30318	intron_retention	FALSE	canonical	3	480	junction_9	34.7662387672968	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAACTAGCTGTCCTTAT	NA	False	NA	NA	False	NA	NA	NA	107073455	107027480	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_-_107029124_107032312_107032384_107033723_107033773_107035426_107035486_107037192_107037326_107046707_107046912_107047251_107047325_107056031_107056133_107061520_107061665_107073267
transcript_15668.known	chr13	+	2051	12	FSM	ENSMUSG00000021692.10	ENSMUST00000022203.10	2051	12	0	0	0	0	multi-exon	FALSE	canonical	3	504	junction_4	50.5395680025492	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCGCCTACAGTTTTTCC	NA	False	NA	NA	False	AGTAAA	-13	NA	107083666	107096268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086125_107086199_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
transcript_15672.nic	chr13	+	1342	11	NIC	ENSMUSG00000021692.10	novel	2051	12	NA	NA	-24	-840	intron_retention	TRUE	canonical	3	551	junction_5	39.2372272210971	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCTAGTGTTTTATATATA	NA	False	NA	15	True	NA	NA	NA	107083610	107095428	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_107083792_107084093_107084168_107085208_107085296_107086062_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
transcript_15679.known	chr13	+	3338	10	FSM	ENSMUSG00000021692.10	ENSMUST00000223870.2	3338	10	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_4	41.347966346456	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAGCAAGTTTGTGTCTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	107083685	107096732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_107083792_107084093_107084168_107085208_107086294_107086376_107086427_107088325_107088450_107088823_107088917_107089941_107090007_107091183_107091248_107093601_107093709_107095162
transcript_15685.known	chr13	+	340	2	FSM	ENSMUSG00000114893.2	ENSMUST00000224166.2	340	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCTATAAACATACATGAGT	NA	False	NA	NA	False	AATAAA	-25	NA	107170791	107171725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_107170837_107171430
transcript_1569.nic	chr1	+	2953	22	ISM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	-247	6384	-15	0	5prime_fragment	FALSE	canonical	3	1352	junction_6	88.9904323630029	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAAAAAGGAGGAGGA	NA	False	NA	48	True	NA	NA	NA	85992093	86060489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358_86058452_86060435
transcript_15694.nnic	chr13	-	764	6	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	-42	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	284.258755362082	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGATCCCTTCGTATTTC	NA	False	NA	-7	True	AATAAA	-9	NA	108295199	108189128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_108189199_108189246_108189489_108202727_108202826_108217886_108217928_108228067_108228158_108294976
transcript_15698.nnic	chr13	-	686	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	-42	-2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	252.741345054583	132	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCCCTTCGTATTTCCTGA	NA	False	NA	-3	True	AATAAA	-13	NA	108295199	108189124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_108189199_108189230_108189489_108217886_108217928_108228067_108228158_108294976
transcript_1570.nic	chr1	+	2639	21	ISM	ENSMUSG00000026229.18	ENSMUST00000027432.9	3112	25	1	8434	1	-2032	5prime_fragment	FALSE	canonical	3	1352	junction_6	87.9451391493583	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGGAAAAGGTATGTTC	NA	False	NA	NA	False	AAGAAA	-3	NA	85992341	86058439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_85992528_85998304_85998349_85999335_85999410_85999548_85999719_86003520_86003727_86005077_86005222_86006289_86006517_86009758_86009820_86010868_86010998_86012903_86012993_86013751_86013831_86014296_86014471_86016530_86016643_86017715_86017913_86019724_86019821_86021997_86022063_86044296_86044412_86046231_86046349_86054177_86054281_86055857_86056028_86058358
transcript_15700.nnic	chr13	-	666	5	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	-42	-6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	252.741345054583	133	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGATCCCTTCGTATTTC	NA	False	NA	-7	True	AATAAA	-9	NA	108295199	108189128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_108189199_108189246_108189489_108217886_108217928_108228067_108228158_108294976
transcript_15701.known	chr13	-	678	4	FSM	ENSMUSG00000068184.8	ENSMUST00000163558.3	678	4	0	0	0	0	multi-exon	FALSE	canonical	3	548	junction_2	39.4151691047439	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCGTATTTCCTGACT	NA	False	NA	-1	True	AATAAA	-15	NA	108295157	108189122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_108189489_108217886_108217928_108228067_108228158_108294976
transcript_15703.nnic	chr13	-	574	4	NNC	ENSMUSG00000068184.8	novel	678	4	NA	NA	9	-6	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	294.045725847	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGATCCCTTCGTATTTC	NA	False	NA	-7	True	AATAAA	-9	NA	108295148	108189128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_108189199_108189246_108189489_108228067_108228158_108294976
transcript_15705.known	chr13	+	1918	3	FSM	ENSMUSG00000071180.6	ENSMUST00000095458.6	1918	3	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	47	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCCTGAGTTTTTGTCT	NA	False	NA	NA	False	AATAAA	-44	NA	108180979	108185706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_108181021_108182958_108183103_108183973
transcript_15706.known	chr13	+	2097	3	FSM	ENSMUSG00000071180.6	ENSMUST00000225972.2	2097	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	82	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTCCTGAGTTTTTGTCT	NA	False	NA	NA	False	AATAAA	-44	NA	108181022	108185706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_108181243_108182958_108183103_108183973
transcript_15707.known	chr13	+	1092	3	FSM	ENSMUSG00000071180.6	ENSMUST00000226042.2	1092	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	87.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGAGCTTAAAGTATTCAAG	NA	False	NA	NA	False	AGTAAA	-32	NA	108181019	108184773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_108181168_108182958_108183103_108183973
transcript_15711.nnic	chr13	+	1556	13	NNC	ENSMUSG00000021694.19	novel	2111	12	NA	NA	0	-464	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_10	23.6848521680466	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACTTGTCTCCTTGAG	NA	False	NA	12	True	AATATA	-21	NA	108295271	108331047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_108295405_108297168_108297265_108302923_108303026_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320274_108320356_108320457_108323730_108323815_108330589
transcript_15714.known	chr13	+	2111	12	FSM	ENSMUSG00000021694.19	ENSMUST00000054835.15	2111	12	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_3	12.8281714780819	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTTTCCTTTCCTTGT	NA	False	NA	7	True	ATTAAA	-18	NA	108295271	108331519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_108295405_108297168_108297265_108302923_108303026_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
transcript_15716.nic	chr13	+	1542	12	NIC	ENSMUSG00000021694.19	novel	2111	12	NA	NA	-1	-464	combination_of_known_junctions	FALSE	canonical	2	2	junction_9	25.2314902289491	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACTTGTCTCCTTGAG	NA	False	NA	12	True	AATATA	-21	NA	108295270	108331047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_108295405_108297168_108297265_108302923_108303026_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320356_108320457_108323730_108323815_108330589
transcript_15717.known	chr13	+	2095	12	FSM	ENSMUSG00000021694.19	ENSMUST00000152634.8	2095	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	31.8161038282489	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTCTTTCCTTTCCTTGT	NA	False	NA	7	True	ATTAAA	-18	NA	108295287	108331519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108312338_108312441_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
transcript_15721.known	chr13	+	2395	11	FSM	ENSMUSG00000021694.19	ENSMUST00000123657.8	2395	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	15.1489273547667	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGATAGAAAATAAAACT	NA	False	NA	NA	False	NA	NA	NA	108295264	108331898	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320258_108320457_108323730_108323815_108330589
transcript_15723.nic	chr13	+	1439	11	NIC	ENSMUSG00000021694.19	novel	2111	12	NA	NA	0	-464	combination_of_known_junctions	FALSE	canonical	2	2	junction_8	27.4424853101901	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACTTGTCTCCTTGAG	NA	False	NA	12	True	AATATA	-21	NA	108295271	108331047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_108295405_108297168_108297265_108305901_108306026_108309235_108309318_108310525_108310595_108312087_108312155_108314150_108314252_108315105_108315231_108320356_108320457_108323730_108323815_108330589
transcript_15724.known	chr13	+	2351	8	FSM	ENSMUSG00000021696.10	ENSMUST00000225550.2	2351	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	34.299997025049	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACTATGAGTTTTGCCT	NA	False	NA	NA	False	AATAAA	-20	NA	108350943	108420607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_108351035_108393200_108393333_108403723_108403869_108407166_108407248_108408338_108408396_108410819_108410926_108416110_108416248_108419005
transcript_15726.known	chr13	+	4013	8	FSM	ENSMUSG00000021696.10	ENSMUST00000022207.10	4013	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	37.4045724586758	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTTGTCATGTCTAACT	NA	False	NA	NA	False	NA	NA	NA	108350937	108422217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_108351035_108393200_108393333_108403723_108403915_108407166_108407248_108408338_108408396_108410819_108410926_108416110_108416248_108419005
transcript_15732.known	chr13	+	2563	11	FSM	ENSMUSG00000021697.13	ENSMUST00000051594.12	2563	11	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	8.78009111570034	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGTGTTTTTCTTCTT	2847	False	NA	39	True	NA	NA	NA	108452865	108526119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_108453004_108460439_108460706_108493927_108494064_108498768_108498897_108500066_108500198_108505346_108505395_108510246_108510388_108519289_108519457_108521259_108521437_108523368_108523555_108525074
transcript_15733.known	chr13	+	2123	15	FSM	ENSMUSG00000021699.18	ENSMUST00000135275.8	2123	15	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_1	7.84544583871199	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTCTGTTTTTTTGGTTT	NA	False	NA	NA	False	CATAAA	-12	NA	109769313	110087898	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_109769445_109876920_109877113_109894110_109894148_109906067_109906142_109909164_109909215_110040110_110040224_110070401_110070496_110071839_110072013_110073210_110073310_110074500_110074666_110075795_110075896_110084773_110084929_110085947_110086071_110086742_110086926_110087464
transcript_15734.known	chr13	+	795	1	FSM	ENSMUSG00000059751.8	ENSMUST00000074680.8	795	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12692	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCCAGATTTTTAATAGTG	NA	False	NA	NA	False	NA	NA	NA	108807136	108807931	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_108807100_108807900
transcript_15735.known	chr13	+	2800	14	FSM	ENSMUSG00000021701.9	ENSMUST00000022212.9	2800	14	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	11.0769230769231	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGGTCTCCTGTCCTTGC	NA	False	NA	6	True	AATAAA	-17	NA	110531579	110537378	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_110531972_110532548_110532657_110532809_110532927_110533124_110533255_110533440_110533529_110534004_110534101_110534221_110534421_110534507_110534656_110534906_110535005_110535212_110535343_110535554_110535796_110535913_110536044_110536296_110536408_110536566
transcript_15738.known	chr13	-	3694	13	FSM	ENSMUSG00000032745.19	ENSMUST00000047627.14	3694	13	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_7	122.771100245765	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGTTGTTCTTTGTAGTG	NA	False	NA	-4	True	AATAAA	-15	NA	111626645	111562213	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111584429_111584490_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
transcript_15744.known	chr13	-	3299	12	FSM	ENSMUSG00000032745.19	ENSMUST00000091236.11	3299	12	0	0	0	0	multi-exon	FALSE	canonical	3	389	junction_6	235.263031976713	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCTTTCCAAACAAATTC	NA	False	NA	NA	False	ACTAAA	-35	NA	111626562	111562465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_111563186_111570081_111570185_111572930_111573119_111574490_111574659_111575637_111575779_111577165_111577351_111585466_111585534_111589557_111589782_111589906_111590031_111603384_111603505_111623956_111624905_111626251
transcript_15751.known	chr13	-	663	2	FSM	ENSMUSG00000085634.3	ENSMUST00000132880.3	663	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGTTTTTTTTGTTTTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	111686445	111658883	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_111659245_111686143
transcript_15752.known	chr13	+	621	4	FSM	ENSMUSG00000086649.2	ENSMUST00000156236.2	621	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	8.73053390247253	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAGCTACCGAAAACACTT	861	False	NA	-3	True	NA	NA	NA	111716794	111781364	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_111716936_111717450_111717511_111778756_111779023_111781210
transcript_15753.nic	chr13	+	1716	8	ISM	ENSMUSG00000021756.13	ENSMUST00000184276.8	3009	18	-150	13416	10	7513	5prime_fragment	FALSE	canonical	3	350	junction_7	23.2922865396444	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTGGTACTAGCATTTG	NA	False	NA	NA	False	NA	NA	NA	112600624	112627663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_+_112600785_112609120_112609208_112611564_112611644_112616518_112616825_112617957_112618079_112624242_112624404_112625037_112625193_112627016
transcript_15755.nnic	chr13	+	1800	6	NNC	ENSMUSG00000021756.13	novel	3004	6	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	158.377523657873	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCGTTCCAATATTATTGC	NA	False	NA	NA	False	AATAAA	-19	NA	112600624	112620150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_112600785_112609120_112609208_112611564_112611644_112616518_112616825_112617957_112618079_112619103
transcript_15756.nnic	chr13	+	2298	6	NNC	ENSMUSG00000021756.13	novel	8678	17	NA	NA	10	498	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	158.377523657873	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTCTTCTGCATAGCTTAA	NA	False	NA	NA	False	AATAAA	-20	NA	112600624	112620648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_+_112600785_112609120_112609208_112611564_112611644_112616518_112616825_112617957_112618079_112619103
transcript_15757.known	chr13	-	3012	22	FSM	ENSMUSG00000021758.15	ENSMUST00000099166.10	3012	22	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	9.06389513461723	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTTCCAACAGCATTTT	NA	False	NA	-1	True	AATAAA	-22	NA	112789009	112734868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_112735566_112736151_112736269_112736385_112736657_112737945_112738046_112741020_112741167_112748508_112748676_112750230_112750361_112757149_112757305_112757741_112757895_112758698_112758842_112759191_112759240_112759332_112759381_112761314_112761357_112761878_112761960_112762855_112762958_112765371_112765432_112770418_112770470_112772501_112772580_112777683_112777762_112781042_112781101_112787865_112787953_112788809
transcript_15758.nnic	chr13	-	2970	22	NNC	ENSMUSG00000021758.15	novel	3012	22	NA	NA	59	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_19	12.5835079052629	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCCAACAGCATTTTTC	NA	False	NA	1	True	AATAAA	-24	NA	112788950	112734866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr13_-_112735566_112736151_112736269_112736385_112736657_112737945_112738046_112741020_112741167_112748508_112748676_112750230_112750361_112757149_112757305_112757741_112757895_112758698_112758842_112759191_112759240_112759332_112759381_112761314_112761357_112761878_112761960_112762855_112762958_112765371_112765432_112770418_112770470_112772501_112772580_112777683_112777777_112781042_112781101_112787865_112787953_112788809
transcript_1576.known	chr1	+	2582	2	FSM	ENSMUSG00000079445.4	ENSMUST00000113306.4	2582	2	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_1	0	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGCTGCTTCCTTGGTCTT	NA	False	NA	36	True	AATAAA	-27	NA	86230955	86235027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_86231277_86232766
transcript_15764.known	chr13	+	8910	15	FSM	ENSMUSG00000047789.6	ENSMUST00000052514.6	8910	15	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_2	7.31122983038101	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATATTTTTTCTTGTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	112797299	112875283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_112797407_112806120_112806266_112822599_112822733_112825806_112825929_112826055_112826120_112826692_112826787_112831774_112831946_112834518_112834579_112837990_112838186_112840071_112840180_112850674_112850782_112859731_112859846_112862580_112862730_112865731_112865822_112868032
transcript_15769.known	chr13	+	1178	1	FSM	ENSMUSG00000047789.6	ENSMUST00000225367.2	1178	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112797284	112798462	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_112797300_112798500
transcript_15773.known	chr13	-	3689	27	FSM	ENSMUSG00000016018.5	ENSMUST00000022281.5	3689	27	0	0	0	0	multi-exon	TRUE	canonical	3	524	junction_21	59.6473487509525	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTGTGAATTTCAGGAACC	7236	False	NA	NA	False	AAAAAG	-14	NA	113063932	113003951	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_113004530_113005544_113005650_113009432_113009596_113011129_113011187_113012969_113013076_113017512_113017677_113019633_113019823_113023288_113023400_113023968_113024098_113027812_113027882_113028421_113028595_113032006_113032158_113035298_113035425_113038006_113038109_113039932_113040044_113041519_113041600_113043518_113043651_113045428_113045532_113046349_113046449_113047443_113047569_113049633_113049725_113050889_113051065_113054122_113054236_113055101_113055165_113056893_113056961_113058163_113058302_113063763
transcript_15782.known	chr13	+	1598	6	FSM	ENSMUSG00000021759.15	ENSMUST00000016144.12	1598	6	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_2	66.7730484551964	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTTGTAGTCAGTTGCAA	9637	False	NA	14	True	AATAAA	-29	NA	112937325	113004428	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_112937801_112971392_112971548_112993279_112993561_112996177_112996236_113003329_113003507_113003976
transcript_15784.known	chr13	+	1272	6	FSM	ENSMUSG00000021759.15	ENSMUST00000070951.8	1272	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	139.137342219837	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGTACAGACCATTCTATA	9708	False	NA	NA	False	NA	NA	NA	112937396	113004176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_112937801_112987936_112988089_112993279_112993561_112996177_112996236_113003329_113003507_113003976
transcript_15787.nnic	chr13	+	1336	5	NIC	ENSMUSG00000021759.15	novel	1598	6	NA	NA	-16	-123	combination_of_known_splicesites	FALSE	canonical	3	68	junction_1	115.720298565118	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTCCCACCTGTACATT	9621	False	NA	NA	False	ATTAAA	-24	NA	112937309	113004305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_112937801_112993279_112993561_112996177_112996236_113003329_113003507_113003976
transcript_15788.nnic	chr13	+	1459	5	NIC	ENSMUSG00000021759.15	novel	1598	6	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	68	junction_1	115.720298565118	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTTTGTAGTCAGTTGCAA	9621	False	NA	14	True	AATAAA	-29	NA	112937309	113004428	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_112937801_112993279_112993561_112996177_112996236_113003329_113003507_113003976
transcript_15789.known	chr13	+	4682	27	FSM	ENSMUSG00000042426.7	ENSMUST00000038574.7	4682	27	0	0	0	0	multi-exon	TRUE	canonical	3	222	junction_12	28.2580040501697	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTCCATCTCTGTGT	NA	False	NA	18	True	AATAAA	-18	NA	113063987	113105966	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_113064508_113066160_113066235_113067375_113067490_113069040_113069171_113069617_113069764_113072002_113072132_113076906_113077034_113078206_113078366_113081027_113081194_113081603_113081728_113083296_113083909_113084745_113084890_113089336_113089514_113090207_113090349_113091681_113091827_113091933_113092052_113092915_113093001_113095446_113095536_113096652_113096782_113096856_113096933_113097594_113097820_113099267_113099405_113099796_113099891_113100980_113101275_113101748_113101881_113103069_113103167_113105668
transcript_15792.nic	chr13	+	822	5	ISM	ENSMUSG00000042426.7	ENSMUST00000224176.2	1272	8	162	8500	-32	1052	5prime_fragment	FALSE	canonical	3	291	junction_2	20.0499376557634	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAATTTTTTAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	113064149	113069763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_+_113064508_113066160_113066235_113067375_113067490_113069040_113069171_113069617
transcript_15793.known	chr13	+	1736	3	FSM	ENSMUSG00000042426.7	ENSMUST00000223866.2	1736	3	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_2	16	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATTTA	NA	False	NA	NA	False	NA	NA	NA	113064181	113068711	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_113064508_113066160_113066235_113067375
transcript_15794.known	chr13	+	1875	3	FSM	ENSMUSG00000042417.6	ENSMUST00000038404.6	1875	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCCTGTGTGCGACAATTA	NA	False	NA	NA	False	AATAAA	-20	NA	113124335	113127311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_113124819_113125424_113125611_113126105
transcript_15795.known	chr13	-	1042	3	FSM	ENSMUSG00000021760.6	ENSMUST00000022282.6	1042	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	4	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAAGTGCATTTTTTTTT	NA	False	NA	NA	False	AATAAA	-23	NA	113182944	113179292	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_113179834_113181965_113182228_113182705
transcript_15796.known	chr13	-	769	2	FSM	ENSMUSG00000021760.6	ENSMUST00000231962.2	769	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCATTTTTTTTTCTTTTC	NA	False	NA	NA	False	AATAAA	-29	NA	113182927	113179286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_113179834_113182705
transcript_15797.nic	chr13	+	1903	4	ISM	ENSMUSG00000042348.11	ENSMUST00000091201.7	3364	5	-15	188389	-15	-186204	5prime_fragment	FALSE	canonical	3	349	junction_1	12.0277457017791	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCCATTTATGTTATTACC	NA	False	NA	NA	False	AAGAAA	-7	NA	113931025	114105608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr13_+_113931233_114058782_114058928_114070599_114070660_114104117
transcript_158.known	SIRV6	+	574	8	FSM	SIRV6A	SIRV602	574	8	0	0	0	0	multi-exon	FALSE	canonical	3	8561	junction_3	5767.41567350754	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTGCCTAATTGTTGGT	NA	False	NA	NA	False	NA	NA	NA	1124	11279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6_+_1187_1468_1535_1640_1736_2780_2829_3106_3165_10724_10819_11031_11109_11205
transcript_15801.known	chr13	-	1698	5	FSM	ENSMUSG00000021764.9	ENSMUST00000022286.8	1698	5	0	0	0	0	multi-exon	FALSE	canonical	3	1521	junction_3	83.4187478927849	1909	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGCTGTTATGTTTTTA	NA	False	NA	NA	False	AATAAA	-23	NA	114524794	114424330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114487983_114488063_114524494
transcript_15805.known	chr13	-	571	4	FSM	ENSMUSG00000021764.9	ENSMUST00000225035.2	571	4	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	707.770364517256	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACTTGGCAGTTTCTA	NA	False	NA	-18	True	AATAAA	-19	NA	114524599	114425183	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114524494
transcript_15807.known	chr13	-	716	4	FSM	ENSMUSG00000021764.9	ENSMUST00000232101.2	716	4	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	693.907454604399	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGTGGTTTCTGGTTGCTT	NA	False	NA	NA	False	NA	NA	NA	114524586	114425030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_114425403_114453392_114453566_114487983_114488063_114524494
transcript_15810.known	chr13	-	383	2	FSM	ENSMUSG00000021764.9	ENSMUST00000225701.2	383	2	0	0	0	0	multi-exon	FALSE	canonical	3	1521	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTTCTATTTTTGAAATA	NA	False	NA	NA	False	NA	NA	NA	114524616	114487801	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_114488063_114524494
transcript_15811.known	chr13	-	686	6	FSM	ENSMUSG00000021764.9	ENSMUST00000225707.2	686	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	793.529986830996	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACACTTGGCAGTTTCTA	NA	False	NA	-18	True	AATAAA	-19	NA	114524585	114425183	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_114425403_114444352_114444427_114453392_114453566_114487983_114488063_114523943_114523994_114524494
transcript_15812.known	chr13	-	873	2	FSM	ENSMUSG00000021764.9	ENSMUST00000225978.3	873	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGCTTAGTTTTCTTTTC	NA	False	NA	NA	False	NA	NA	NA	114524589	114497303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_114498082_114524494
transcript_15816.known	chr13	+	1152	7	FSM	ENSMUSG00000015536.15	ENSMUST00000015680.11	1152	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	16.9844700306551	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATAGATCCTGTCTCC	NA	False	NA	NA	False	AATAAA	-18	NA	114954812	114965259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746_114961898_114962693_114962818_114964824
transcript_15817.known	chr13	+	1074	7	FSM	ENSMUSG00000015536.15	ENSMUST00000183407.2	1074	7	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_5	59.1373166640339	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAGTCTAAAAATAGATC	NA	False	NA	NA	False	AATAAA	-10	NA	114954835	114965251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_114954860_114955871_114955994_114957337_114957483_114961102_114961231_114961746_114961898_114962740_114962818_114964824
transcript_15820.known	chr13	+	745	6	FSM	ENSMUSG00000015536.15	ENSMUST00000164737.8	745	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	76.0121042992496	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCTCGCAGTGCGCTGC	NA	False	NA	NA	False	AATAGA	-30	NA	114954822	114965080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_114954860_114957337_114957483_114961102_114961231_114961746_114961802_114962693_114962818_114964824
transcript_15821.known	chr13	+	1855	6	FSM	ENSMUSG00000015536.15	ENSMUST00000166176.9	1855	6	0	0	0	0	multi-exon	TRUE	canonical	3	20	junction_1	59.3450924677011	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGAAAGGATTTTCTCTT	NA	False	NA	NA	False	AATAAA	-20	NA	114954794	114966066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_114954860_114957337_114957483_114961102_114961231_114961746_114961898_114962693_114962818_114964824
transcript_15823.known	chr13	+	2116	5	FSM	ENSMUSG00000015536.15	ENSMUST00000170985.8	2116	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	65.157501486782	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAGCATCCAGTTTTTGA	NA	False	NA	NA	False	ATTAAA	-20	NA	114954805	114965542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_114954860_114957337_114957483_114961102_114961231_114961746_114962818_114964824
transcript_15824.known	chr13	-	1600	2	FSM	ENSMUSG00000042275.10	ENSMUST00000109226.5	1600	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTCTAGTTCGAGTTAC	NA	False	NA	-1	True	AATAAA	-22	NA	115226722	115224890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_115225498_115225729
transcript_15825.known	chr13	+	2923	9	FSM	ENSMUSG00000021728.9	ENSMUST00000022242.9	2923	9	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_8	42.5617198900608	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTCCTTACTGTTGTCTG	NA	False	NA	NA	False	AATACA	-17	NA	117356807	117410951	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_117357494_117369262_117369353_117385807_117386001_117386236_117386323_117400930_117401059_117403855_117404136_117405465_117405500_117408580_117408636_117409580
transcript_15829.known	chr13	+	996	2	FSM	ENSMUSG00000021728.9	ENSMUST00000224821.2	996	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATAAA	-16	NA	117357273	117366653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_117357494_117365877
transcript_15830.known	chr13	-	3319	5	FSM	ENSMUSG00000021731.11	ENSMUST00000022245.10	3319	5	0	0	0	0	multi-exon	FALSE	canonical	3	1748	junction_3	110.939172522604	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTGAGGCCTGAGTGTT	NA	False	NA	NA	False	TTTAAA	-19	NA	118523788	118514916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_118517206_118519411_118519589_118521102_118521209_118521769_118521916_118523187
transcript_15836.known	chr13	-	1885	4	FSM	ENSMUSG00000025453.19	ENSMUST00000144599.2	1885	4	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_3	27.3536509852382	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAATTCGTTGAGACTTT	NA	False	NA	NA	False	AATAAA	-14	NA	119545533	119530007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_119531365_119533282_119533513_119541087_119541291_119545438
transcript_15839.known	chr13	+	1525	11	FSM	ENSMUSG00000025451.16	ENSMUST00000109203.9	1525	11	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	94.7694043454954	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGCTAGCTGGTTAGATG	NA	False	NA	109	True	AATAAA	-36	NA	119565136	119593927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_119565177_119566695_119566866_119574504_119574691_119577294_119577408_119582272_119582385_119584250_119584377_119586439_119586547_119587231_119587350_119588327_119588383_119592231_119592326_119593523
transcript_15844.known	chr13	+	2627	14	FSM	ENSMUSG00000062822.9	ENSMUST00000225186.2	2627	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	45.7272593593877	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTTCATTTCTTACATCA	NA	False	NA	12	True	AATAAA	-22	NA	119599307	119622656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_119599656_119601100_119601227_119602609_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
transcript_15846.nic	chr13	+	2506	13	NIC	ENSMUSG00000062822.9	novel	2565	13	NA	NA	-4	0	combination_of_known_junctions	TRUE	canonical	3	42	junction_1	29.2546292633035	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	9	True	AATAAA	-19	NA	119599299	119622653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_119599656_119602609_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
transcript_15847.known	chr13	+	2565	13	FSM	ENSMUSG00000062822.9	ENSMUST00000026519.10	2565	13	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	23.5189049253763	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCATTTCTTACA	NA	False	NA	9	True	AATAAA	-19	NA	119599303	119622653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_119599656_119602546_119602841_119603402_119603493_119606050_119606698_119608674_119608777_119610368_119610493_119611368_119611461_119612472_119612543_119614219_119614391_119615963_119616059_119617470_119617567_119620988_119621030_119622262
transcript_15851.nnic	chr13	+	1110	5	NIC	ENSMUSG00000062822.9	novel	3406	14	NA	NA	-1	-64	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	58.9888760699846	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGTCTGCAGATGTGGA	NA	False	NA	5	True	AATAAA	-17	NA	119599302	119606297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr13_+_119599656_119601100_119601227_119602546_119602841_119603402_119603493_119606050
transcript_15852.known	chr13	+	978	4	FSM	ENSMUSG00000062822.9	ENSMUST00000224081.2	978	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	38.4389848403357	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACCAGATCTTGAAATCTA	NA	False	NA	-1	True	AATAAA	-15	NA	119599309	119606361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_119599656_119602609_119602841_119603402_119603493_119606050
transcript_15857.known	chr13	+	1563	1	FSM	ENSMUSG00000062822.9	ENSMUST00000225292.2	1563	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAATAAAAAAAAAGATG	NA	False	NA	NA	False	NA	NA	NA	119599311	119600874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_119599300_119600900
transcript_15859.known	chr13	+	3464	11	FSM	ENSMUSG00000093930.3	ENSMUST00000224188.2	3464	11	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	180.959553491934	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTTATGCCTGTTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	120151999	120169796	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_120152050_120156524_120156584_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
transcript_15860.known	chr13	+	3245	10	FSM	ENSMUSG00000093930.3	ENSMUST00000179869.3	3245	10	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_1	79.8526420630178	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGCTCTTTGAGTGTTT	NA	False	NA	15	True	AATAAA	-15	NA	120151981	120169618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_120152050_120161199_120161658_120162043_120162170_120162611_120162777_120164070_120164237_120165055_120165227_120165960_120166068_120166592_120166719_120166883_120167048_120167924
transcript_15862.known	chr13	-	4103	4	FSM	ENSMUSG00000095930.2	ENSMUST00000178142.2	4103	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	3.55902608401044	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCCTTGTGGTTCTGTTT	NA	False	NA	NA	False	GATAAA	-11	NA	120217418	120171629	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_120174332_120175643_120175913_120189115_120190060_120217230
transcript_15863.known	chr13	-	2966	8	FSM	ENSMUSG00000094870.9	ENSMUST00000178271.3	2966	8	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_7	48.3110668861025	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGTGTATGGGTGTT	NA	False	NA	76	True	AGTAAA	-18	NA	120252342	120226722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_120228563_120230241_120230373_120237302_120237526_120237627_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252314
transcript_15865.known	chr13	-	3067	7	FSM	ENSMUSG00000094870.9	ENSMUST00000177916.8	3067	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	50.5426112854842	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGTGTATGGGTGTT	NA	False	NA	76	True	AGTAAA	-18	NA	120252341	120226722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_120228563_120230241_120230373_120237302_120237986_120244307_120244453_120250395_120250498_120251684_120251824_120252314
transcript_15868.known	chr13	-	885	2	FSM	ENSMUSG00000094237.3	ENSMUST00000195234.2	885	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAATTTGTGTTCTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	120291752	120289496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_-_120290225_120291595
transcript_15869.known	chr13	+	886	2	FSM	ENSMUSG00000063846.9	ENSMUST00000223770.2	886	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAATTTGTGTTCTTCT	NA	False	NA	NA	False	AATAAA	-15	NA	120700646	120702903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr13_+_120700805_120702175
transcript_15870.known	chr14	+	1523	6	FSM	ENSMUSG00000058317.13	ENSMUST00000150727.8	1523	6	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	30.1569229199532	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTTCTGTACCAGCCTTT	NA	False	NA	7	True	AATAAA	-19	NA	3575919	3896119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_3576112_3581246_3581431_3598151_3598203_3839264_3839398_3882697_3882846_3895304
transcript_15873.known	chr14	+	1408	6	FSM	ENSMUSG00000021774.14	ENSMUST00000022296.7	1408	6	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_1	27.2073519475895	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGCTGTGTTCATTTC	NA	False	NA	24	True	AATAAA	-21	NA	4137836	4186974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_4138010_4138561_4138747_4143265_4143317_4184427_4184561_4185274_4185423_4186256
transcript_15874.known	chr14	+	550	6	FSM	ENSMUSG00000021774.14	ENSMUST00000225612.2	550	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	122.433002086856	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGGACCAAGAGATACGC	NA	False	NA	NA	False	NA	NA	NA	4137951	4186327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_4138010_4138657_4138747_4143265_4143317_4184427_4184561_4185274_4185423_4186256
transcript_15881.known	chr14	-	1199	5	FSM	ENSMUSG00000021772.16	ENSMUST00000022294.15	1199	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	46.4885738649832	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATACCATGGGAACTCTT	NA	False	NA	-39	True	AATAAA	-14	NA	4198469	4189258	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_4189750_4191150_4191393_4191594_4191853_4192889_4193001_4198372
transcript_15885.known	chr14	+	802	4	FSM	ENSMUSG00000012405.17	ENSMUST00000100799.9	802	4	0	0	0	0	multi-exon	FALSE	canonical	3	877	junction_1	6301.70655898508	718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198725	4200736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_4198852_4199235_4199418_4199652_4199790_4200379
transcript_15887.known	chr14	+	883	4	FSM	ENSMUSG00000012405.17	ENSMUST00000079419.12	883	4	0	0	0	0	multi-exon	FALSE	canonical	3	1636	junction_1	5972.09066315046	1550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGCTTAAAGGTGTTAT	NA	False	NA	2	True	AATAAA	-17	NA	4198666	4200736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_4198874_4199235_4199418_4199652_4199790_4200379
transcript_15890.known	chr14	-	619	4	FSM	ENSMUSG00000021772.16	ENSMUST00000133460.2	619	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	47.8493004709113	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGTGGGAGGTGACAGT	NA	False	NA	NA	False	NA	NA	NA	4198510	4189653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_4189750_4191150_4191393_4192727_4192871_4198372
transcript_15891.known	chr14	-	4598	4	FSM	ENSMUSG00000021772.16	ENSMUST00000132374.9	4598	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_3	10.6144555520604	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATTAGTCCCAATAAGATT	NA	False	NA	NA	False	AATAAA	-22	NA	4198560	4185692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_4189750_4191150_4191393_4192889_4193001_4198372
transcript_15894.known	chr14	+	1922	4	FSM	ENSMUSG00000012405.17	ENSMUST00000080281.14	1922	4	0	0	0	0	multi-exon	FALSE	canonical	3	8735	junction_1	3197.35060462391	1178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGTTATCTTTTATGTT	NA	False	NA	NA	False	AATAAA	-18	NA	4198628	4201873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_4198738_4199235_4199418_4199652_4199790_4200379
transcript_15895.known	chr14	+	565	2	FSM	ENSMUSG00000012405.17	ENSMUST00000224196.2	565	2	0	0	0	0	multi-exon	FALSE	canonical	3	16172	junction_1	0	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCATTTCTGCTTAAAGGT	NA	False	NA	-3	True	AATAAA	-12	NA	4199576	4200731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_4199790_4200379
transcript_15896.known	chr14	-	2935	12	FSM	ENSMUSG00000021785.9	ENSMUST00000022310.7	2935	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	12.9506373690434	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAGAGTGAAAGAGTAGCA	NA	False	NA	NA	False	AATAAA	-14	NA	6220483	6157836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_6158905_6159271_6159450_6175089_6175276_6178827_6178993_6186289_6186401_6187877_6188024_6188948_6189071_6191741_6191965_6199122_6199289_6208962_6209200_6215006_6215122_6220265
transcript_15898.known	chr14	+	3434	3	FSM	ENSMUSG00000021786.14	ENSMUST00000112625.9	3434	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.5	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAAAATGTTGTAAGA	NA	False	NA	NA	False	TATAAA	-3	NA	6226431	6231076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_6226474_6226964_6227973_6228692
transcript_15899.known	chr14	-	1741	1	FSM	ENSMUSG00000114907.2	ENSMUST00000225889.2	1741	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTTTGTAATATTATT	NA	False	NA	NA	False	AATAAA	-22	NA	6226412	6224671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_6224700_6226400
transcript_15900.known	chr14	-	8132	25	FSM	ENSMUSG00000021733.12	ENSMUST00000057015.8	8132	25	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_19	12.4782449576141	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGCCTTGGCTGTTGTTTTT	NA	False	NA	-5	True	AATAAA	-14	NA	7767484	7669822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_7673687_7675705_7675814_7678598_7678697_7683339_7683472_7687540_7687715_7690868_7690938_7694334_7694587_7694710_7694873_7696412_7696527_7697065_7697228_7698448_7698555_7702777_7703024_7704052_7704187_7707240_7707416_7709421_7709529_7712331_7712479_7719240_7719329_7721139_7721298_7723679_7723796_7729849_7730039_7731418_7731580_7732255_7732395_7735894_7736042_7740479_7740562_7766482
transcript_15907.nnic	chr14	-	733	6	NIC	ENSMUSG00000068758.9	novel	1128	10	NA	NA	353	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_5	12.5793481548131	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGTGCTGCTATCAGT	NA	False	NA	1	True	AATAAA	-19	NA	8119789	8114269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8118795_8118826_8119495
transcript_15908.nnic	chr14	-	715	5	NIC	ENSMUSG00000068758.9	novel	1128	10	NA	NA	341	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_4	12.5	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGTGCTGCTATCAGT	NA	False	NA	1	True	AATAAA	-19	NA	8119801	8114269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_8114394_8114689_8114757_8117743_8117847_8118598_8118714_8119495
transcript_15909.nnic	chr14	-	588	4	NIC	ENSMUSG00000068758.9	novel	1128	10	NA	NA	353	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_3	13.2748718344933	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGTGCTGCTATCAGT	NA	False	NA	1	True	AATAAA	-19	NA	8119789	8114269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_8114394_8114689_8114757_8117743_8117847_8119495
transcript_15913.known	chr14	+	1387	8	FSM	ENSMUSG00000021737.5	ENSMUST00000022256.5	1387	8	0	0	0	0	multi-exon	FALSE	canonical	3	1151	junction_1	36.7689975886408	1556	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTCTTAAACATACA	NA	False	NA	25	True	AATAAA	-27	NA	8348778	8357589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_8349025_8349570_8349777_8352792_8352939_8353159_8353380_8353506_8353616_8355471_8355641_8357159_8357238_8357376
transcript_15920.known	chr14	+	844	9	FSM	ENSMUSG00000053453.10	ENSMUST00000224015.2	844	9	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	279.504472236134	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAACGGAAATGTATCCC	NA	False	NA	-84	True	NA	NA	NA	8508550	8520645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_8508579_8512131_8512210_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
transcript_15922.nnic	chr14	+	1065	9	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	5	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	287.160125191504	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508507	8520749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_8508579_8512131_8512284_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
transcript_15924.nic	chr14	+	1139	9	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	272.312292001298	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508453	8520749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_8508579_8512131_8512304_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
transcript_15929.nic	chr14	+	971	8	NIC	ENSMUSG00000053453.10	novel	951	9	NA	NA	-63	0	combination_of_known_junctions	FALSE	canonical	3	208	junction_2	184.198207352397	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508422	8520749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_8508579_8515106_8515198_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
transcript_15932.known	chr14	+	937	8	FSM	ENSMUSG00000053453.10	ENSMUST00000065865.10	937	8	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	118.776758531907	414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGTGCTCATTCAAAAC	NA	False	NA	22	True	AATAAA	-16	NA	8508485	8520751	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_8508579_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
transcript_15934.nic	chr14	+	1013	8	NIC	ENSMUSG00000053453.10	novel	707	6	NA	NA	122	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	230.414976128918	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTTTGTGCTCATTCAAA	NA	False	NA	20	True	AATAAA	-14	NA	8508724	8520749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_8508896_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
transcript_15940.known	chr14	+	765	8	FSM	ENSMUSG00000053453.10	ENSMUST00000225325.2	765	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	244.554071480217	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAGTATTCATGTGTCGT	NA	False	NA	NA	False	NA	NA	NA	8507910	8520613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_8507970_8515106_8515225_8516224_8516353_8516600_8516688_8518499_8518558_8519397_8519465_8519561_8519632_8520435
transcript_15942.nic	chr14	+	1770	8	ISM	ENSMUSG00000084902.3	ENSMUST00000144914.3	2952	19	-370	49345	-370	-49345	5prime_fragment	FALSE	canonical	1	2	junction_2	2.24971653543195	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGAAGAATTAATGGACTA	NA	False	NA	NA	False	NA	NA	NA	8554914	8605800	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_+_8555366_8564494_8564692_8570082_8570255_8572801_8572891_8597527_8597623_8601671_8601780_8603579_8603777_8605339
transcript_15943.nic	chr14	-	983	7	NIC	ENSMUSG00000033111.17	novel	900	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	67.1501220318243	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCACGGCCCTCTTGAGTC	NA	False	NA	-10	True	AATAAA	-16	NA	10185537	10167785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_10168192_10168274_10168365_10168516_10168616_10172106_10172182_10182369_10182494_10184294_10184376_10185429
transcript_15946.nic	chr14	-	976	7	NIC	ENSMUSG00000033111.17	novel	900	6	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	65.3029265976818	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCACGGCCCTCTTGAGTC	NA	False	NA	-10	True	AATAAA	-16	NA	10185527	10167785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_10168192_10168274_10168365_10168516_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185429
transcript_15947.nic	chr14	-	953	7	NIC	ENSMUSG00000033111.17	novel	809	6	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	61.1375952712859	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCACGGCCCTCTTGAGTC	NA	False	NA	-10	True	AATAAA	-16	NA	10185580	10167785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_10168192_10168274_10168365_10168516_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185505
transcript_15949.known	chr14	-	1010	6	FSM	ENSMUSG00000033111.17	ENSMUST00000223927.2	1010	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	68.9770976484224	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTCCTCCAAGTCCTTA	NA	False	NA	NA	False	AATAGA	-24	NA	10185509	10168029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_10168616_10169980_10170042_10172106_10172182_10182369_10182494_10184294_10184379_10185429
transcript_15950.known	chr14	-	2477	6	FSM	ENSMUSG00000033111.17	ENSMUST00000112669.10	2477	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	65.4785461048121	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGAAGGTGTTTAAAGG	NA	False	NA	NA	False	AATAAA	-19	NA	10185554	10166531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_10168616_10169980_10170042_10172106_10172182_10182369_10182494_10184294_10184379_10185505
transcript_15954.known	chr14	-	2444	5	FSM	ENSMUSG00000033111.17	ENSMUST00000224389.2	2444	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	59.4011784394889	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGAAGGTGTTTAAAGG	NA	False	NA	NA	False	AATAAA	-19	NA	10185509	10166531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184376_10185429
transcript_15956.known	chr14	-	1191	5	FSM	ENSMUSG00000033111.17	ENSMUST00000225294.2	1191	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	54.4196655631032	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGGCCCTCTTGAGTCTC	NA	False	NA	-8	True	AATAAA	-18	NA	10185505	10167783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184379_10185429
transcript_15957.known	chr14	-	2292	5	FSM	ENSMUSG00000033111.17	ENSMUST00000223762.2	2292	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	58.5683361552981	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTCTCAGAAAAAGCTTTGT	NA	False	NA	-8	True	ATTAAA	-45	NA	10185541	10166639	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_10168616_10172106_10172182_10182369_10182494_10184294_10184376_10185505
transcript_15961.known	chr14	-	915	1	FSM	ENSMUSG00000033111.17	ENSMUST00000223697.2	915	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	10185462	10184547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_10184500_10185500
transcript_15964.known	chr14	+	2681	16	FSM	ENSMUSG00000021747.13	ENSMUST00000102996.4	2681	16	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_15	21.4813614300605	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGTGCTTCCTTTTGTTC	NA	False	NA	14	True	AATAAA	-14	NA	13803532	14038581	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_13803796_13807424_13807515_13810290_13810385_13825303_13825377_13891310_13891426_13911582_13911740_13933117_13933256_13951006_13951144_13951780_13951935_13953205_13953323_13954397_13954521_13958579_13958912_13987152_13987357_13996360_13996423_14026822_14026918_14038054
transcript_15968.known	chr14	-	1650	3	FSM	ENSMUSG00000021752.15	ENSMUST00000022272.14	1650	3	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_1	7.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAAAGGTTGTATTTATT	NA	False	NA	NA	False	AATAAA	-15	NA	14255633	14246209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_14247587_14249552_14249623_14255430
transcript_15977.known	chr14	+	1513	10	FSM	ENSMUSG00000021748.10	ENSMUST00000022268.10	1513	10	0	0	0	0	multi-exon	FALSE	canonical	3	2290	junction_6	170.664134819183	2155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTCTTGGAGTACTATT	NA	False	NA	NA	False	AATAAA	-16	NA	14296747	14303777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443_14298507_14298597_14298634_14299326_14299613_14299953_14300065_14300336_14300429_14302918_14303061_14303291
transcript_15996.known	chr14	+	482	4	FSM	ENSMUSG00000021748.10	ENSMUST00000224690.2	482	4	0	0	0	0	multi-exon	FALSE	canonical	3	2463	junction_1	122.17564769171	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTTTACTCCCAGCACT	NA	False	NA	NA	False	NA	NA	NA	14296835	14298716	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_14296883_14296955_14297010_14298242_14298351_14298443
transcript_15997.known	chr14	+	1914	4	FSM	ENSMUSG00000021748.10	ENSMUST00000224864.2	1914	4	0	0	0	0	multi-exon	FALSE	canonical	3	2463	junction_1	144.03008944893	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAGAAAAAAGACAGC	NA	False	NA	NA	False	NA	NA	NA	14296747	14298918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_14296883_14296955_14298351_14298443_14298507_14298597
transcript_16.known	ERCC-00046	+	506	1	FSM	ERCC-00046A	DQ516748	506	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3595	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00046_+_0_500
transcript_16001.known	chr14	+	2377	1	FSM	ENSMUSG00000021748.10	ENSMUST00000225735.2	2377	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAGGAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	14296810	14299187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_14296800_14299200
transcript_16003.known	chr14	-	2812	18	FSM	ENSMUSG00000033885.16	ENSMUST00000036682.9	2812	18	0	0	0	0	multi-exon	TRUE	canonical	3	68	junction_2	18.5091392369855	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTAGCTTTGCTAGGTA	NA	False	NA	0	True	AATAAA	-17	NA	14371562	14304655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_14305839_14314427_14314488_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061_14325180_14325535_14325698_14328228_14328331_14329026_14329132_14331708_14331784_14332353_14332428_14332826_14332905_14338982_14339170_14347380_14347429_14349901_14349953_14371356
transcript_16004.known	chr14	-	2765	18	FSM	ENSMUSG00000033885.16	ENSMUST00000225653.2	2765	18	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	21.2781870861862	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTATGTTGTAGCTTTGC	NA	False	NA	-6	True	AATAAA	-11	NA	14371518	14304661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_14305839_14314427_14314491_14317622_14317693_14318191_14318279_14318768_14318847_14321644_14321694_14323500_14323580_14325061_14325180_14325535_14325698_14328228_14328331_14329026_14329132_14331708_14331784_14332353_14332428_14332826_14332905_14338982_14339170_14347380_14347429_14349901_14349953_14371356
transcript_16008.known	chr14	-	2401	6	FSM	ENSMUSG00000023156.5	ENSMUST00000023924.4	2401	6	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_4	6.88767014308903	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTGTGTATATACCTT	NA	False	NA	-15	True	NA	NA	NA	14389406	14377938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_14379866_14380975_14381055_14382232_14382310_14385771_14385857_14385978_14386066_14389260
transcript_16013.nnic	chr14	-	1227	6	NNC	ENSMUSG00000023156.5	novel	2401	6	NA	NA	139	30	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	87.8621647809795	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGTGCTCTTATTATCAAA	NA	False	NA	0	True	AATACA	-25	NA	14389267	14379188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_14379866_14380975_14381055_14382232_14382310_14385771_14385857_14385978_14386066_14389045
transcript_16018.known	chr14	-	477	1	FSM	ENSMUSG00000023156.5	ENSMUST00000180369.2	477	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATACAAATTTAAAGTTATA	NA	False	NA	-30	True	NA	NA	NA	14379695	14379218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_14379200_14379700
transcript_16019.known	chr14	-	2226	9	FSM	ENSMUSG00000025277.15	ENSMUST00000166497.9	2226	9	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_8	7.63216876123687	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGGCAACACCCAGGTA	NA	False	NA	NA	False	AATAAA	-13	NA	14466871	14413009	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14441383_14441537_14466809
transcript_16022.known	chr14	-	1958	8	FSM	ENSMUSG00000025277.15	ENSMUST00000225234.2	1958	8	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_7	23.7589940005541	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCTGTGAATTCAGTGAA	NA	False	NA	NA	False	AGTAAA	-18	NA	14466854	14413107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_14414303_14419864_14419966_14420144_14420200_14424147_14424306_14426946_14427080_14428540_14428655_14429868_14430026_14466809
transcript_16032.nnic	chr14	+	1499	3	NNC	ENSMUSG00000079364.4	novel	2055	7	NA	NA	-90251	-9931	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGACAGAATGTATTGTTC	6817	False	NA	NA	False	AATAAA	-41	NA	14810955	14914691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_14811253_14907121_14907273_14913640
transcript_16036.nnic	chr14	+	1864	6	Fusion	ENSMUSG00000091617.9_ENSMUSG00000091472.3	novel	1817	6	NA	NA	-4860	-53	multi-exon	FALSE	canonical	0	0	junction_2	2.33238075793812	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCT	NA	False	NA	NA	False	AATAAA	-17	NA	14981150	15176072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr14_+_14981235_14985916_14986068_15170282_15170446_15171398_15171531_15172205_15172389_15174921
transcript_16041.nnic	chr14	+	1654	4	NNC	ENSMUSG00000090363.9	novel	1861	6	NA	NA	-70278	-53	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4.71404520791032	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	15224961	15316209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_15225176_15310386_15310550_15311505_15311638_15315064
transcript_16043.known	chr14	+	984	5	FSM	ENSMUSG00000094021.8	ENSMUST00000169215.8	984	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	8	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGTCAGAAAACACAGCAG	NA	False	NA	NA	False	AATAAA	-3	NA	15424802	15433238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_15424996_15425726_15425890_15426844_15426977_15427652_15427837_15432926
transcript_16047.nnic	chr14	+	1616	4	NNC	ENSMUSG00000090691.4	novel	2053	7	NA	NA	-156	-9033	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	11.0855260988773	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGACAGAATGTATTGTTC	NA	False	NA	NA	False	AATAAA	-42	NA	15579654	15592238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_15579954_15581334_15581449_15584666_15584818_15591186
transcript_16050.nnic	chr14	+	2464	8	NNC	ENSMUSG00000096904.8	novel	1745	5	NA	NA	-14990	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9.16292440618547	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTGTATGCTTCAGCT	NA	False	NA	NA	False	AATAAA	-17	NA	16042300	16063946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_16042755_16044129_16044244_16047431_16047583_16057290_16057426_16058159_16058323_16059272_16059405_16060080_16060263_16062813
transcript_16051.nnic	chr14	+	2015	7	NNC	ENSMUSG00000096904.8	novel	1745	5	NA	NA	-14676	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	9.46337971105226	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTGTATGCTTCAGCT	NA	False	NA	NA	False	AATAAA	-17	NA	16042614	16063946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_16042755_16044129_16044244_16047431_16047583_16058159_16058323_16059272_16059405_16060080_16060263_16062813
transcript_16054.nnic	chr14	+	1927	5	NNC	ENSMUSG00000096904.8	novel	1745	5	NA	NA	-14853	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	10.6624340560681	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTGTATGCTTCAGCT	NA	False	NA	NA	False	AATAAA	-17	NA	16042437	16063946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_16042755_16058159_16058323_16059272_16059405_16060080_16060263_16062813
transcript_16058.nnic	chr14	+	1140	7	Fusion	ENSMUSG00000094634.9_ENSMUSG00000090643.9	novel	1756	5	NA	NA	-1	0	multi-exon	FALSE	canonical	0	0	junction_2	12.953978367882	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTGTATGCTTCAGCT	NA	False	NA	NA	False	AATAAA	-17	NA	16361106	16499029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr14_+_16361193_16362573_16362688_16490635_16490771_16491501_16491665_16492619_16492752_16493428_16493613_16498703
transcript_16069.nnic	chr14	-	2095	8	NNC	ENSMUSG00000094132.8	novel	882	7	NA	NA	-5	1057	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	10.6961751699056	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTGTATGCTTCAGCT	NA	False	NA	NA	False	AATAAA	-17	NA	17614202	17592864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_17593998_17596548_17596732_17597407_17597540_17598489_17598653_17599386_17599522_17609286_17609438_17612629_17612744_17614118
transcript_16072.nnic	chr14	-	1981	7	NNC	ENSMUSG00000094132.8	novel	882	7	NA	NA	-5	1057	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	11.3284303119776	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTGTATGCTTCAGCT	NA	False	NA	NA	False	AATAAA	-17	NA	17614202	17592864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_17593998_17596548_17596732_17597407_17597540_17598489_17598653_17599386_17599522_17609286_17609438_17614118
transcript_16074.nnic	chr14	-	1960	7	NNC	ENSMUSG00000094132.8	novel	882	7	NA	NA	-5	1057	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	11.3284303119776	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTGTATGCTTCAGCT	NA	False	NA	NA	False	AATAAA	-17	NA	17614202	17592864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_17593998_17596548_17596732_17597407_17597540_17598489_17598653_17609286_17609438_17612629_17612744_17614118
transcript_16077.nic	chr14	-	1509	2	ISM	ENSMUSG00000079391.11	ENSMUST00000164512.8	1990	7	-372	16459	-372	-16459	5prime_fragment	FALSE	canonical	2	7	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGAAATGTCCTCATAGTT	NA	False	NA	NA	False	AAGAAA	-8	NA	18287569	18281336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_18282389_18287112
transcript_16079.nnic	chr14	-	2131	8	NNC	ENSMUSG00000091563.9	novel	1961	7	NA	NA	-91709	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2.32992949004287	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	18450956	18336988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_18338138_18341636_18341820_18342497_18342630_18343579_18343743_18344474_18344610_18354336_18354488_18357666_18357781_18450852
transcript_16081.nnic	chr14	-	2121	9	Fusion	ENSMUSG00000096488.2_ENSMUSG00000095195.8	novel	1955	7	NA	NA	5	0	multi-exon	TRUE	non_canonical	0	0	junction_3	1.69096865730859	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19057154	18875552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr14_-_18876696_18880194_18880378_18881053_18881186_18882135_18882299_18883030_18883166_18892819_18892971_18896174_18896289_18897665_18897691_19057079
transcript_16083.nnic	chr14	-	2008	7	Fusion	ENSMUSG00000096488.2_ENSMUSG00000095195.8	novel	1955	7	NA	NA	4	0	multi-exon	FALSE	canonical	0	0	junction_3	1.46249406456535	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19057155	18875552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr14_-_18876696_18880194_18880378_18881053_18881186_18882135_18882299_18883030_18883166_18892819_18892971_19057054
transcript_16086.nnic	chr14	-	1722	5	Fusion	ENSMUSG00000096488.2_ENSMUSG00000095195.8	novel	1955	7	NA	NA	4	0	multi-exon	FALSE	canonical	0	0	junction_3	1.6393596310755	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19057155	18875552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr14_-_18876696_18880194_18880378_18881053_18881186_18882135_18882299_19057054
transcript_16092.nnic	chr14	-	2658	8	NNC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	-552	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.38505138783324	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19137698	19114973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19122451_19122587_19132241_19132393_19135569_19135684_19137061
transcript_16095.nnic	chr14	-	2198	7	NNC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	-227	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.46249406456535	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19137373	19114973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19132241_19132393_19135569_19135684_19137061
transcript_16097.nnic	chr14	-	2396	6	NNC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	-539	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1.46969384566991	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19137685	19114973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19132241_19132393_19137061
transcript_16100.nnic	chr14	-	2080	5	NIC	ENSMUSG00000096574.8	novel	1955	7	NA	NA	-374	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	1.6393596310755	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGTGTATGCTTCTGCG	NA	False	NA	NA	False	AATAAA	-17	NA	19137520	19114973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_19116117_19119615_19119799_19120474_19120607_19121556_19121720_19137061
transcript_16101.known	chr14	+	4876	21	FSM	ENSMUSG00000021806.5	ENSMUST00000022340.5	4876	21	0	0	0	0	multi-exon	FALSE	canonical	3	1309	junction_14	132.834897523204	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTGGTCTAAATATCTAT	NA	False	NA	24	True	AATAAA	-16	NA	19801332	19861855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_19801634_19802308_19802618_19813733_19813967_19818277_19819006_19828063_19828214_19828805_19829052_19829604_19829806_19831202_19831434_19839738_19839883_19840345_19840475_19841575_19841720_19847231_19847352_19848464_19848714_19852405_19852628_19853116_19853287_19855365_19855496_19855910_19856083_19857994_19858153_19860047_19860172_19861021_19861135_19861253
transcript_16105.known	chr14	-	1562	8	FSM	ENSMUSG00000021807.7	ENSMUST00000022341.7	1562	8	0	0	0	0	multi-exon	FALSE	canonical	3	1848	junction_5	420.22365279378	1793	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAATATACTTGAGTCTC	1688	False	NA	NA	False	AGTAAA	-19	NA	19873892	19861418	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_19862306_19862416_19862466_19864604_19864674_19866252_19866342_19867128_19867216_19869974_19870075_19872633_19872759_19873736
transcript_16113.known	chr14	-	3826	4	FSM	ENSMUSG00000043004.14	ENSMUST00000160013.8	3826	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_3	22.3755819291179	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTACGGGGTCACTTTC	NA	False	NA	-4	True	AATAAA	-18	NA	20027317	19922626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_19926004_19941353_19941470_20010721_20010763_20027025
transcript_16114.known	chr14	-	458	3	FSM	ENSMUSG00000043004.14	ENSMUST00000159028.8	458	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	62	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTGGACACTCCGGGCTG	NA	False	NA	NA	False	TTTAAA	-17	NA	20027127	19925763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_19926004_19941353_19941470_20027025
transcript_16115.known	chr14	-	2315	2	FSM	ENSMUSG00000045107.6	ENSMUST00000059666.6	2315	2	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTCCTTCAGTGGTTTT	5305	False	NA	NA	False	AATAAA	-41	NA	20133251	20125703	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_20127713_20132945
transcript_16116.known	chr14	-	3392	5	FSM	ENSMUSG00000023243.10	ENSMUST00000024011.10	3392	5	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_3	12.5573683548744	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTGTGGTATGTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	20231877	20190124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_20192526_20194702_20194872_20195023_20195191_20196568_20196681_20231334
transcript_16124.known	chr14	+	2494	9	FSM	ENSMUSG00000021809.11	ENSMUST00000022343.6	2494	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	3.70809924354783	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGACTCTTTTCTTCTCC	NA	False	NA	NA	False	ATTAAA	-15	NA	20344789	20367646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_20344861_20350654_20350748_20354020_20354161_20356299_20356435_20357760_20357868_20359739_20359866_20360689_20360802_20361538_20361694_20366091
transcript_16130.known	chr14	-	3132	14	FSM	ENSMUSG00000021810.4	ENSMUST00000022344.4	3132	14	0	0	0	0	multi-exon	FALSE	canonical	3	477	junction_8	30.9081479462529	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTTTGCTTCCTGTTCCT	NA	False	NA	NA	False	NA	NA	NA	20398189	20369919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_20371020_20374440_20374650_20377291_20377360_20378670_20378858_20378950_20379058_20380021_20380108_20383396_20383526_20386136_20386266_20386949_20387143_20388196_20388376_20388476_20388565_20393323_20393442_20396678_20396890_20397861
transcript_16132.known	chr14	+	2151	14	FSM	ENSMUSG00000039599.17	ENSMUST00000225942.2	2151	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	90.1241746919511	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACTGCTCATGTTGTCTG	NA	False	NA	NA	False	AGTAAA	-40	NA	20398289	20433344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20424397_20424523_20425577_20425682_20427842_20428068_20428467_20428592_20428831_20428952_20431820_20431890_20432984
transcript_16136.known	chr14	+	4483	8	FSM	ENSMUSG00000039599.17	ENSMUST00000224721.2	4483	8	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_7	47.5106862308097	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGACAGTTATTCATTCT	NA	False	NA	NA	False	NA	NA	NA	20398327	20421410	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20409822_20409985_20413330_20413519_20417913
transcript_16137.nic	chr14	+	1893	8	ISM	ENSMUSG00000039599.17	ENSMUST00000051915.7	1981	12	-13	7087	-13	115	5prime_fragment	FALSE	canonical	3	59	junction_5	87.5522001728229	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGTACTTGTCCATGTG	NA	False	NA	NA	False	AATAAA	-22	NA	20398276	20426470	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20413330_20413519_20424397_20424523_20425577
transcript_16138.nic	chr14	+	1594	7	NIC	ENSMUSG00000039599.17	novel	4483	8	NA	NA	-13	497	combination_of_known_junctions	FALSE	canonical	3	59	junction_5	78.3207436691512	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGAATATGTTCTTTAAT	NA	False	NA	14	True	NA	NA	NA	20398276	20418632	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_20398463_20401379_20401485_20402771_20402908_20406422_20406566_20408091_20408209_20413330_20413519_20417913
transcript_16142.known	chr14	-	1631	5	FSM	ENSMUSG00000021811.8	ENSMUST00000022345.7	1631	5	0	0	0	0	multi-exon	TRUE	canonical	3	896	junction_2	62.1711347813437	419	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTATGTGTTTTGAAC	NA	False	NA	NA	False	ATTAAA	-23	NA	20438978	20434705	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_20435547_20435867_20435955_20438024_20438280_20438367_20438509_20438671
transcript_16149.known	chr14	-	801	3	FSM	ENSMUSG00000049960.5	ENSMUST00000224286.2	801	3	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	790	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCACGGTCCTCTGGCATAG	8678	False	NA	-36	True	AATAAA	-14	NA	20443551	20441294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_20441529_20441960_20442222_20443245
transcript_16150.known	chr14	-	2572	3	FSM	ENSMUSG00000049960.5	ENSMUST00000061444.5	2572	3	0	0	0	0	multi-exon	TRUE	canonical	3	1591	junction_2	40	945	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTTTCCCAGTTTTCCT	8527	False	NA	NA	False	AAAACA	-24	NA	20443702	20439371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_20441529_20441960_20442222_20443548
transcript_16151.known	chr14	-	2904	14	FSM	ENSMUSG00000021814.18	ENSMUST00000100844.6	2904	14	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_9	337.357184335068	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATTTGTATGTTTTTTT	7990	False	NA	15	True	AATAAA	-40	NA	20530189	20505328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517525_20517592_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
transcript_16154.known	chr14	-	2727	13	FSM	ENSMUSG00000021814.18	ENSMUST00000224975.2	2727	13	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_12	241.43268845696	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCTTTTGACCTAGAGTA	8200	False	NA	-1	True	AATAAA	-24	NA	20529979	20505344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529847
transcript_16156.known	chr14	-	2851	13	FSM	ENSMUSG00000021814.18	ENSMUST00000065504.17	2851	13	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_12	120.241741458151	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTTGTATGTTTTTTTT	7978	False	NA	16	True	AATAAA	-41	NA	20530201	20505327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_20506670_20508637_20508751_20510226_20510303_20510380_20510552_20512622_20512794_20512974_20513089_20514676_20514772_20514911_20515015_20517938_20518004_20519455_20519558_20521435_20521641_20523342_20523398_20529962
transcript_16165.known	chr14	+	4461	23	FSM	ENSMUSG00000039367.12	ENSMUST00000048657.10	4461	23	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_9	29.806850674089	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTCTCATTACTCGCGAC	NA	False	NA	15	True	AATAAA	-18	NA	20724375	20744920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_20724457_20726025_20726226_20729595_20729732_20732746_20732920_20733155_20733531_20733952_20734090_20736576_20736689_20736922_20737051_20738453_20738593_20738798_20738915_20739066_20739192_20739339_20739532_20739701_20739796_20739971_20740089_20740771_20740943_20741333_20741431_20741505_20741652_20741768_20741908_20742054_20742174_20742413_20742594_20742787_20742980_20743211_20743302_20743718
transcript_16167.known	chr14	+	605	3	FSM	ENSMUSG00000039367.12	ENSMUST00000224061.2	605	3	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_1	29.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCTTTAGACTTGACAG	NA	False	NA	NA	False	NA	NA	NA	20724390	20729934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_20724457_20726025_20726226_20729595
transcript_16168.known	chr14	+	616	3	FSM	ENSMUSG00000063787.5	ENSMUST00000071215.5	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	1953	junction_1	51.5	1133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCCATTTCTTCTAATT	NA	False	NA	33	True	AATAAA	-16	NA	20753073	20754493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_20753266_20753357_20753477_20754188
transcript_16170.known	chr14	+	578	3	FSM	ENSMUSG00000063787.5	ENSMUST00000226072.2	578	3	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	962	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGCCATTTCTTCTAATT	NA	False	NA	33	True	AATAAA	-16	NA	20753125	20754493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_20753266_20753343_20753477_20754188
transcript_16172.known	chr14	+	3422	2	FSM	ENSMUSG00000039357.3	ENSMUST00000225804.2	3422	2	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TCAAAAAAAAAAAGTTAAAA	NA	False	NA	NA	False	NA	NA	NA	20745044	20750263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_20746482_20748278
transcript_16173.known	chr14	+	419	2	FSM	ENSMUSG00000063787.5	ENSMUST00000224132.2	419	2	0	0	0	0	multi-exon	FALSE	canonical	3	1953	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACCAAAAAAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	20753166	20753677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_20753266_20753357
transcript_16176.known	chr14	+	557	2	FSM	ENSMUSG00000063787.5	ENSMUST00000224633.2	557	2	0	0	0	0	multi-exon	FALSE	canonical	3	2056	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAGTTGGCCATTTCTT	NA	False	NA	27	True	AATAAA	-10	NA	20753218	20754487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_20753477_20754188
transcript_16177.known	chr14	-	1554	3	FSM	ENSMUSG00000097577.3	ENSMUST00000180987.2	1554	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGTAGGCTCTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	20753080	20737303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_20738682_20738832_20738908_20752979
transcript_16178.known	chr14	-	3907	15	FSM	ENSMUSG00000039308.7	ENSMUST00000223679.2	3907	15	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	9.23281636117516	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTCTGCTTCATTGC	9423	False	NA	-1	True	AATAAA	-15	NA	20784630	20773797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_20774429_20774528_20774632_20774778_20774889_20774975_20775147_20775346_20775522_20775641_20775766_20777061_20777159_20777245_20777429_20777554_20777684_20778143_20778330_20778518_20778674_20778943_20779032_20779233_20780546_20783617_20783713_20784282
transcript_16181.known	chr14	-	3604	20	FSM	ENSMUSG00000021820.19	ENSMUST00000080440.14	3604	20	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	9.18507762457831	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGTCCATTGTGTTATT	NA	False	NA	-8	True	AATAAA	-10	NA	20844098	20784950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20795859_20795929_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
transcript_16182.known	chr14	-	3564	19	FSM	ENSMUSG00000021820.19	ENSMUST00000100837.11	3564	19	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	6.2610396328366	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTTATTGCTGTTGG	NA	False	NA	0	True	AATAAA	-18	NA	20844119	20784942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_20786921_20787326_20787572_20788916_20789012_20789394_20789471_20792772_20792822_20794671_20794717_20805726_20805771_20810211_20810255_20810464_20810549_20814213_20814337_20814928_20815024_20815463_20815548_20815979_20816083_20816220_20816294_20820131_20820198_20821074_20821130_20829271_20829332_20842586_20842682_20843968
transcript_16185.known	chr14	+	449	2	FSM	ENSMUSG00000114241.2	ENSMUST00000224276.2	449	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAAGCCTCCATTTTTCTT	1068	False	NA	NA	False	AATAAA	-25	NA	20844306	20846628	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_20844529_20846401
transcript_16186.known	chr14	+	2342	11	FSM	ENSMUSG00000021822.4	ENSMUST00000022368.4	2342	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.66332495807108	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGATTCTGGTTTCTCCATG	NA	False	NA	NA	False	AATAAA	-14	NA	20886727	20893453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_20886803_20887116_20887204_20887677_20887709_20887845_20887954_20888580_20888756_20889163_20889256_20889399_20889623_20889842_20889992_20890565_20890707_20891013_20891163_20892341
transcript_16188.known	chr14	-	6732	9	FSM	ENSMUSG00000021824.14	ENSMUST00000154460.8	6732	9	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_8	42.1092329543059	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAATGACTGCACTGTGT	NA	False	NA	NA	False	CATAAA	-29	NA	21102518	21081509	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102207
transcript_16189.known	chr14	-	1770	9	FSM	ENSMUSG00000021824.14	ENSMUST00000022371.10	1770	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	105.050880529389	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTATTATATTTTTTATAAA	NA	False	NA	NA	False	NA	NA	NA	21102290	21086081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094882_21094893_21095555_21095832_21102207
transcript_16192.nic	chr14	-	2178	9	NIC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	-11	264	combination_of_known_junctions	FALSE	canonical	3	26	junction_8	95.1609656056516	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGCCATTCTCATGTTT	NA	False	NA	4	True	ATTAAA	-27	NA	21102587	21085817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21094720_21094893_21095555_21095832_21102522
transcript_16196.nic	chr14	-	2911	7	NIC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	8	1207	combination_of_known_junctions	FALSE	canonical	3	34	junction_6	106.531163932855	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTTAAAGTTTGATTG	NA	False	NA	-8	True	AATAAA	-17	NA	21102510	21084874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21102207
transcript_16197.nnic	chr14	-	2650	7	NIC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	12	1207	combination_of_known_splicesites	FALSE	canonical	1	2	junction_6	118.11670311838	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTTAAAGTTTGATTG	NA	False	NA	-8	True	AATAAA	-17	NA	21102564	21084874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21102522
transcript_16198.nic	chr14	-	1735	7	NIC	ENSMUSG00000021824.14	novel	6732	9	NA	NA	13	264	combination_of_known_junctions	FALSE	canonical	3	34	junction_6	106.531163932855	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGCCATTCTCATGTTT	NA	False	NA	4	True	ATTAAA	-27	NA	21102277	21085817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_21086772_21087180_21087326_21088045_21088254_21089195_21089330_21090119_21090206_21091020_21091159_21102207
transcript_16202.known	chr14	+	1782	11	FSM	ENSMUSG00000039197.11	ENSMUST00000045376.11	1782	11	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_9	34.7499640287584	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTCTGTCTTGCTTG	NA	False	NA	16	True	AATAAA	-19	NA	21102641	21498637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_21102769_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21419138_21419175_21431570_21431686_21473570_21473658_21497881
transcript_16203.known	chr14	+	1818	11	FSM	ENSMUSG00000039197.11	ENSMUST00000224069.2	1818	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	100.003199948802	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGGATTTTTTTTCTGTC	NA	False	NA	9	True	AATAAA	-12	NA	21126219	21498630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_21126390_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21419138_21419175_21431570_21431686_21473570_21473658_21497881
transcript_16210.nic	chr14	+	1035	8	NIC	ENSMUSG00000039197.11	novel	1782	11	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_7	129.691313258421	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGTTCTTCCCAACTA	NA	False	NA	NA	False	ATTAAA	-16	NA	21102596	21376861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_21102769_21142434_21142510_21153887_21153942_21219867_21219947_21284900_21285074_21290530_21290640_21368080_21368252_21376659
transcript_16212.known	chr14	+	289	2	FSM	ENSMUSG00000039197.11	ENSMUST00000223558.2	289	2	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATGATGATCCATTTTA	NA	False	NA	4	True	AATAAA	-15	NA	21102678	21103988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_21102769_21103789
transcript_16213.nic	chr14	+	1416	6	NIC	ENSMUSG00000021767.20	novel	6165	16	NA	NA	-4	89	combination_of_known_junctions	FALSE	canonical	3	106	junction_5	10.1113797278116	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATTAAAGCAACGATTGT	NA	False	NA	NA	False	AATAAA	-37	NA	21531497	21672134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_21531622_21566693_21567567_21659821_21659931_21668958_21669075_21669285_21669368_21672022
transcript_16216.known	chr14	+	1613	6	FSM	ENSMUSG00000021770.12	ENSMUST00000144061.2	1613	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	6.01331855134916	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGTCCCAGGCTCCTG	2631	False	NA	NA	False	AATATA	-25	NA	21800615	21843370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_21800905_21825030_21825624_21830153_21830250_21833746_21833865_21842471_21842623_21843004
transcript_16218.known	chr14	+	1574	6	FSM	ENSMUSG00000021770.12	ENSMUST00000022292.10	1574	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	7.55248303539968	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGTCCCAGGCTCCTG	2614	False	NA	NA	False	AATATA	-25	NA	21800598	21843370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_21800849_21825030_21825624_21830153_21830250_21833746_21833865_21842471_21842623_21843004
transcript_16229.known	chr14	+	1954	10	FSM	ENSMUSG00000021771.15	ENSMUST00000022293.14	1954	10	0	0	0	0	multi-exon	FALSE	canonical	3	2055	junction_4	139.679350612946	2075	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCTGCAGTTTCTAAGTT	NA	False	NA	12	True	AATAAA	-22	NA	21881336	21895947	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_21881736_21881918_21881978_21882951_21883021_21883868_21883919_21887811_21887965_21888058_21888112_21888458_21888687_21890486_21890638_21893949_21894008_21895213
transcript_16235.known	chr14	-	2314	7	FSM	ENSMUSG00000021773.12	ENSMUST00000124549.9	2314	7	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_3	15.9661099415815	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAATCTCAAAGACCTCG	NA	False	NA	NA	False	ATTAAA	-21	NA	21899045	21895922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_21897496_21897681_21897816_21897940_21897996_21898069_21898189_21898277_21898384_21898608_21898737_21898846
transcript_16237.known	chr14	-	981	6	FSM	ENSMUSG00000021773.12	ENSMUST00000022295.4	981	6	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_1	9.09065454189081	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGAGCATCCTCTTCC	NA	False	NA	-10	True	AATAAA	-17	NA	21898962	21897246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_21897496_21897681_21897816_21897940_21898189_21898277_21898384_21898608_21898737_21898846
transcript_16245.nic	chr14	-	2496	6	ISM	ENSMUSG00000021782.15	ENSMUST00000042009.13	6336	27	33205	0	1604	0	3prime_fragment	TRUE	canonical	3	145	junction_4	6.05309838016862	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGTGTGTAGACCCTGG	NA	False	NA	-4	True	AATAAA	-16	NA	24194652	24184020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675_24188820_24194369
transcript_16246.nic	chr14	-	1198	6	ISM	ENSMUSG00000021782.15	ENSMUST00000042009.13	6336	27	33205	1298	1604	-1296	3prime_fragment	FALSE	canonical	3	145	junction_4	6.05309838016862	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTTGTCTATGTTTACT	NA	False	NA	NA	False	NA	NA	NA	24194652	24185318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_24185742_24186636_24186747_24187197_24187308_24188304_24188433_24188675_24188820_24194369
transcript_16247.known	chr14	-	4687	31	FSM	ENSMUSG00000025280.9	ENSMUST00000026322.9	4687	31	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_23	15.9947560851118	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTAAGTGTTTTTTGTT	NA	False	NA	-3	True	AATACA	-26	NA	24537120	24498763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_24499291_24500762_24500896_24502260_24502393_24502578_24502744_24503238_24503404_24504637_24504731_24504922_24505017_24505931_24506103_24507084_24507168_24507286_24507374_24510031_24510146_24511767_24511939_24513621_24513760_24514319_24514439_24515328_24515441_24517002_24517176_24519332_24519498_24520601_24520741_24520887_24521016_24521805_24521876_24524240_24524382_24525807_24525950_24526080_24526185_24529173_24529311_24529426_24529590_24529703_24529944_24532447_24532603_24532854_24533027_24534185_24534324_24534454_24534591_24536940
transcript_16248.nnic	chr14	-	1418	9	NNC	ENSMUSG00000025280.9	novel	775	3	NA	NA	0	-5710	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	46.1923627345474	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	24537120	24527283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_24527381_24529173_24529311_24529426_24529590_24529703_24529944_24532447_24532603_24532854_24533027_24534185_24534324_24534454_24534591_24536940
transcript_1625.known	chr1	-	8202	14	FSM	ENSMUSG00000026234.13	ENSMUST00000027438.8	8202	14	0	0	0	0	multi-exon	FALSE	canonical	3	5685	junction_13	926.263678639546	2431	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATCTGGGTGTTTGGTTT	NA	False	NA	NA	False	AGTAAA	-7	NA	86287122	86272440	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_86278419_86278533_86278758_86279088_86279216_86279919_86280042_86280231_86280356_86280847_86281003_86281453_86281578_86282741_86282867_86283773_86283916_86284092_86284180_86284277_86284464_86284678_86285175_86285828_86285946_86286927
transcript_16250.known	chr14	+	525	7	FSM	ENSMUSG00000025290.18	ENSMUST00000223999.2	525	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	5419.3877396088	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTCCTACACGTCTG	NA	False	NA	4	True	AATAAA	-3	NA	24540797	24545913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24544119_24544138_24545497_24545518_24545842
transcript_16259.known	chr14	+	519	6	FSM	ENSMUSG00000025290.18	ENSMUST00000169826.3	519	6	0	0	0	0	multi-exon	FALSE	canonical	3	4464	junction_5	3607.86166031903	6366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTCCTACACGTCTG	NA	False	NA	4	True	AATAAA	-3	NA	24540785	24545913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545497_24545518_24545842
transcript_16262.known	chr14	+	714	6	FSM	ENSMUSG00000025290.18	ENSMUST00000224568.2	714	6	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_1	4812.24305288085	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTCTGAGAGGACAAATAAA	NA	False	NA	-18	True	NA	NA	NA	24540834	24545891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_24541093_24541817_24541884_24541974_24542185_24543450_24543562_24545497_24545518_24545842
transcript_16266.known	chr14	+	468	5	FSM	ENSMUSG00000025290.18	ENSMUST00000112384.10	468	5	0	0	0	0	multi-exon	FALSE	canonical	3	5102	junction_4	3158.6347030798	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGAGATTGGATACAGGTA	NA	False	NA	NA	False	NA	NA	NA	24540748	24545500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545497
transcript_16267.known	chr14	+	1613	5	FSM	ENSMUSG00000025290.18	ENSMUST00000225023.2	1613	5	0	0	0	0	multi-exon	FALSE	canonical	3	4092	junction_4	3560.754932244	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATCTTGGGACTGGAGAG	NA	False	NA	NA	False	AATAAA	-20	NA	24540785	24547027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450_24543562_24545842
transcript_16271.known	chr14	+	2769	4	FSM	ENSMUSG00000025290.18	ENSMUST00000223939.2	2769	4	0	0	0	0	multi-exon	FALSE	canonical	3	9630	junction_1	1522.07774659071	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCTCCTACACGTCTG	NA	False	NA	4	True	AATAAA	-3	NA	24540796	24545913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_24540827_24541817_24541884_24541974_24542185_24543450
transcript_16273.known	chr14	+	4059	3	FSM	ENSMUSG00000025290.18	ENSMUST00000225994.2	4059	3	0	0	0	0	multi-exon	FALSE	canonical	3	9630	junction_1	1373	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTCTGCTCTGCTGCTTAT	NA	False	NA	17	True	AATAAA	-16	NA	24540785	24545926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_24540827_24541817_24541884_24541974
transcript_16274.nnic	chr14	-	640	4	Antisense	novelGene_ENSMUSG00000007817.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	2.49443825784929	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTCATAATTTGTCTAG	2411	False	NA	NA	False	AATAAA	-16	NA	25591560	25590220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr14_-_25590440_25590751_25590907_25591157_25591288_25591424
transcript_16279.known	chr14	+	1549	6	FSM	ENSMUSG00000021868.8	ENSMUST00000022419.7	1549	6	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_3	21.4532048887806	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGTCTCTGGTTTTGGA	392	False	NA	NA	False	AATAAA	-18	NA	25694593	25700892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_25694848_25695896_25695928_25696427_25696517_25697996_25698094_25698689_25698766_25699890
transcript_16282.nnic	chr14	+	2473	16	NNC	ENSMUSG00000021866.16	novel	2394	15	NA	NA	-1	0	at_least_one_novel_splicesite	TRUE	canonical	3	18	junction_1	139.082165962746	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTGCCAGCATGTTT	335	False	NA	26	True	AATAAA	-34	NA	25842578	25887228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_25842720_25843130_25843209_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
transcript_16284.known	chr14	+	2394	15	FSM	ENSMUSG00000021866.16	ENSMUST00000022416.15	2394	15	0	0	0	0	multi-exon	FALSE	canonical	3	387	junction_6	25.4603533329122	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTGCCAGCATGTTT	336	False	NA	26	True	AATAAA	-34	NA	25842579	25887228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_25842720_25869287_25869351_25870492_25870606_25872935_25873323_25874367_25874456_25874633_25874729_25875094_25875209_25877084_25877176_25877532_25877613_25877774_25877832_25879507_25879602_25883339_25883436_25884350_25884410_25884565_25884689_25886434
transcript_16288.known	chr14	-	536	4	FSM	ENSMUSG00000095304.10	ENSMUST00000183431.8	536	4	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_3	71.4624998785299	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCTAGCCATGACCTCT	NA	False	NA	-14	True	AATAAA	-18	NA	25902898	25888827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_25888951_25889319_25889444_25891184_25891280_25902704
transcript_16289.known	chr14	-	1555	4	FSM	ENSMUSG00000095304.10	ENSMUST00000052286.16	1555	4	0	0	0	0	multi-exon	TRUE	canonical	3	143	junction_3	28.7170100579198	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGTTTAGCTCACAGTC	NA	False	NA	NA	False	AATATA	-19	NA	25903524	25887929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_25888951_25889319_25889444_25891184_25891280_25903209
transcript_16291.nnic	chr14	-	420	4	NNC	ENSMUSG00000095304.10	novel	536	4	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_3	82.174610839764	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCTAGCCATGACCTCT	NA	False	NA	-14	True	AATAAA	-18	NA	25902921	25888827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_25888951_25889319_25889444_25891184_25891280_25902843
transcript_16293.nnic	chr14	-	407	4	NNC	ENSMUSG00000095304.10	novel	536	4	NA	NA	-446	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	90.1122756466744	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCTAGCCATGACCTCT	NA	False	NA	-14	True	AATAAA	-18	NA	25903970	25888827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_25888951_25889319_25889444_25891184_25891280_25903905
transcript_16294.known	chr14	-	439	4	FSM	ENSMUSG00000095304.10	ENSMUST00000183725.2	439	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	90.5796150724139	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGCTAGCCATGACCTC	NA	False	NA	-15	True	AATAAA	-17	NA	25902900	25888828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_25888951_25889319_25889444_25891184_25891280_25902802
transcript_16295.known	chr14	-	1108	4	FSM	ENSMUSG00000072676.13	ENSMUST00000100811.6	1108	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	63.5627424063989	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTCTCTTGATCGTGA	NA	False	NA	-13	True	NA	NA	NA	25927674	25924593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927468
transcript_16296.known	chr14	-	2147	4	FSM	ENSMUSG00000072676.13	ENSMUST00000185006.9	2147	4	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	7.40870359029762	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATAAGTTGCCTCGATCA	NA	False	NA	NA	False	NA	NA	NA	25928096	25923723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_25925332_25925945_25926006_25926221_25926326_25927721
transcript_16299.nnic	chr14	-	545	4	NNC	ENSMUSG00000114753.2	novel	5711	2	NA	NA	5038	-171	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	3.55902608401044	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTTGGCTTCATTCT	1639	False	NA	NA	False	NA	NA	NA	26041071	26036336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_26036463_26036786_26036931_26040411_26040567_26040951
transcript_16300.nnic	chr14	-	480	4	NNC	ENSMUSG00000114753.2	novel	5711	2	NA	NA	4995	-171	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	3.09120616516523	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCTTGGCTTCATTCT	1596	False	NA	NA	False	NA	NA	NA	26041114	26036336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_26036463_26036786_26036931_26040411_26040567_26041059
transcript_16301.known	chr14	-	5476	24	FSM	ENSMUSG00000021870.18	ENSMUST00000102956.8	5476	24	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_11	42.4199902941944	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGAGTTGTACATCATT	NA	False	NA	1	True	AATAAA	-23	NA	26256086	26134322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_26136144_26137357_26137448_26139267_26139403_26143575_26143748_26147719_26147838_26148389_26148711_26149396_26149472_26150942_26151066_26159833_26159894_26160102_26160184_26163729_26163790_26180564_26180616_26181058_26181110_26181196_26181366_26183415_26183554_26184730_26184872_26186355_26186428_26186722_26186819_26189637_26189701_26191518_26191556_26195053_26195127_26203973_26204122_26254482_26255780_26256002
transcript_16304.known	chr14	+	2165	6	FSM	ENSMUSG00000021877.13	ENSMUST00000022429.9	2165	6	0	0	0	0	multi-exon	FALSE	canonical	3	1593	junction_4	101.482215190643	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	1686	False	NA	NA	False	NA	NA	NA	26359228	26378413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_26359642_26367813_26367895_26368068_26368179_26374260_26374333_26374991_26375118_26377050
transcript_16305.known	chr14	-	7725	3	FSM	ENSMUSG00000043702.10	ENSMUST00000052932.10	7725	3	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_2	18	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTGTGGGTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	26391038	26381112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_26387123_26387532_26387612_26389402
transcript_16306.known	chr14	-	566	2	FSM	ENSMUSG00000090861.2	ENSMUST00000166902.2	566	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATACTAATCTTTATTTATT	NA	False	NA	NA	False	AATAAA	-14	NA	26359338	26349561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_26349887_26359097
transcript_16307.known	chr14	+	1582	6	FSM	ENSMUSG00000021877.13	ENSMUST00000166075.8	1582	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	718.995577176939	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATTTGGAATTATTCCT	1838	False	NA	-35	True	AATGAA	-16	NA	26359380	26377956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_26359642_26367813_26367895_26368042_26368179_26374260_26374333_26374991_26375118_26377050
transcript_16308.known	chr14	-	7642	22	FSM	ENSMUSG00000040760.12	ENSMUST00000036570.5	7642	22	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_6	31.5683759207952	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTGTATGAAATATTT	NA	False	NA	-12	True	AATAAA	-20	NA	26693189	26640944	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_26645829_26647373_26647464_26647915_26647967_26649685_26649833_26650396_26650434_26650515_26650691_26662200_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671398_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26692357
transcript_16313.nic	chr14	-	2339	21	NIC	ENSMUSG00000040760.12	novel	7642	22	NA	NA	-52	-4556	combination_of_known_junctions	FALSE	canonical	3	51	junction_18	68.3302824522188	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGCTTTCCTAAACAAGA	NA	False	NA	-1	True	AATAAA	-22	NA	26692514	26645500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_26645829_26647373_26647464_26647915_26647967_26649685_26649833_26650396_26650434_26650515_26650691_26662200_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671398_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26685603_26685664_26686815_26686915_26692357
transcript_16316.nic	chr14	-	1643	16	ISM	ENSMUSG00000040760.12	ENSMUST00000036570.5	7642	22	675	21196	-52	10942	5prime_fragment	FALSE	canonical	3	283	junction_1	27.6115917686757	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCATTTGTTCTGCTGCT	NA	False	NA	NA	False	AGTAAA	-16	NA	26692514	26662140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_26662254_26664604_26664788_26665868_26665961_26667501_26667559_26669077_26669121_26671398_26671588_26672508_26672668_26673391_26673475_26674934_26675082_26680409_26680469_26681381_26681424_26682907_26682996_26684762_26684835_26685603_26685664_26686815_26686915_26692357
transcript_16321.known	chr14	+	983	5	FSM	ENSMUSG00000040726.11	ENSMUST00000224331.2	983	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	69.4383719567215	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGACCGGTATTTTAATATA	NA	False	NA	NA	False	AATAAA	-14	NA	26716372	26724282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_26716480_26722579_26722834_26723328_26723529_26723775_26723878_26723962
transcript_16324.known	chr14	+	3618	10	FSM	ENSMUSG00000021895.11	ENSMUST00000224981.2	3618	10	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	14.3716112484489	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCCTCCTGTGTACAG	NA	False	NA	NA	False	AATAAA	-15	NA	27058022	27125868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_27058227_27084746_27084855_27101547_27101719_27106110_27106174_27107801_27107899_27108049_27108127_27115889_27116148_27119519_27119691_27122221_27122409_27123586
transcript_16328.known	chr14	-	4262	18	FSM	ENSMUSG00000046753.11	ENSMUST00000223689.2	4262	18	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_15	12.2471661858887	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGATGACTGCAATTCAATT	7526	False	NA	NA	False	AATAAA	-17	NA	27230417	27203046	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_27204560_27205764_27205890_27206021_27206276_27207049_27207091_27208419_27208908_27211990_27212102_27212619_27212765_27213744_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27222197_27222640_27227594_27227621_27228607_27228673_27230378
transcript_16329.known	chr14	-	2457	16	FSM	ENSMUSG00000046753.11	ENSMUST00000050480.8	2457	16	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_14	25.3941375561806	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATCTCTTGTC	7541	False	NA	NA	False	AATAAA	-15	NA	27230402	27204368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_27204560_27205764_27205890_27206021_27206276_27207049_27207091_27208419_27208908_27211990_27212102_27212619_27212765_27213744_27213907_27214975_27215061_27215228_27215480_27216037_27216170_27219295_27219409_27220397_27220502_27220680_27220847_27228607_27228673_27230378
transcript_16344.known	chr14	+	1678	5	FSM	ENSMUSG00000042682.11	ENSMUST00000112268.4	1678	5	0	0	0	0	multi-exon	FALSE	canonical	3	836	junction_3	72.5443829665674	483	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTACATAAAATAGGCCCT	NA	False	NA	NA	False	NA	NA	NA	29690264	29697619	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_29690494_29691982_29692074_29693744_29693829_29695317_29695405_29696432
transcript_16348.known	chr14	+	2119	13	FSM	ENSMUSG00000015971.6	ENSMUST00000016115.6	2119	13	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_4	26.6816364232448	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACACTGATTTGAGATAAT	NA	False	NA	21	True	ATTAAA	-25	NA	29700293	29715176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_29700546_29704555_29704727_29705986_29706098_29707882_29707988_29708233_29708408_29708878_29708973_29709175_29709309_29710145_29710300_29710909_29711006_29711616_29711758_29712660_29712926_29713548_29713713_29714917
transcript_16349.known	chr14	+	5576	10	FSM	ENSMUSG00000021962.10	ENSMUST00000022535.9	5576	10	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_5	16.6332999331662	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAATTGTGTTTTTTATT	NA	False	NA	NA	False	AATAAA	-34	NA	30201568	30249020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_30201774_30204149_30204191_30206415_30206544_30224782_30224850_30227502_30227642_30234940_30235055_30240875_30241635_30243546_30243613_30244684_30244904_30245182
transcript_16358.known	chr14	+	3223	14	FSM	ENSMUSG00000021957.8	ENSMUST00000022529.8	3223	14	0	0	0	0	multi-exon	FALSE	canonical	3	1855	junction_3	147.090520774709	1472	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAATTACTGGAGGATTAGA	NA	False	NA	NA	False	NA	NA	NA	30271087	30296677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_30271338_30280677_30280796_30281708_30281823_30282543_30282642_30287444_30287637_30288898_30289018_30290120_30290315_30290931_30291097_30291912_30292070_30292159_30292291_30292919_30293004_30293108_30293203_30294164_30294288_30295293
transcript_16374.known	chr14	-	2777	18	FSM	ENSMUSG00000021948.18	ENSMUST00000112210.11	2777	18	0	0	0	0	multi-exon	TRUE	canonical	3	76	junction_17	15.936508975905	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTGTGGGGACATTTA	5421	False	NA	-3	True	AATAAA	-17	NA	30348167	30317310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_30317983_30320674_30320804_30321274_30321464_30321566_30321706_30323125_30323189_30323716_30323809_30323989_30324164_30324270_30324372_30324693_30324785_30326063_30326165_30327396_30327527_30327772_30327859_30329119_30329152_30329244_30329408_30329564_30329626_30331058_30331259_30332144_30332268_30347936
transcript_16386.known	chr14	+	2347	13	FSM	ENSMUSG00000052395.18	ENSMUST00000228686.2	2347	13	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_8	13.9351175093718	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGTCTTTCCCTGTGTC	NA	False	NA	NA	False	NA	NA	NA	30376363	30413274	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_30376433_30380265_30380352_30382153_30382271_30383227_30383418_30385034_30385137_30388635_30388774_30396126_30396206_30398806_30398865_30399643_30399775_30401187_30401333_30404707_30404814_30411661_30411912_30412398
transcript_16390.known	chr14	+	1317	6	FSM	ENSMUSG00000021918.11	ENSMUST00000227199.2	1317	6	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	7.98999374217527	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTATTTAAAAGTATTTTAT	NA	False	NA	NA	False	GATAAA	-13	NA	30673472	30686275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_30673676_30675759_30676027_30678837_30679036_30679218_30679327_30681097_30681253_30685889
transcript_16392.known	chr14	+	1252	5	FSM	ENSMUSG00000021918.11	ENSMUST00000226833.2	1252	5	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_4	6.25999201277446	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATGGCTCAGTGATTAAG	NA	False	NA	NA	False	NA	NA	NA	30673434	30681535	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_30673676_30675759_30676027_30678837_30679036_30679218_30679327_30681097
transcript_16396.known	chr14	+	1498	10	FSM	ENSMUSG00000021916.17	ENSMUST00000168584.9	1498	10	0	0	0	0	multi-exon	TRUE	canonical	3	45	junction_1	28.2055944017416	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTATTTGCTTCCCCATTT	3526	False	NA	8	True	AATAAA	-19	NA	30723356	30733947	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_30723386_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
transcript_16398.known	chr14	+	2018	10	FSM	ENSMUSG00000021916.17	ENSMUST00000022476.9	2018	10	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	32.2321823686655	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTGCTTCCCCATTTT	3576	False	NA	9	True	AATAAA	-20	NA	30723406	30733948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_30723955_30728415_30728470_30728589_30728689_30730610_30730825_30731691_30731810_30732037_30732123_30732253_30732367_30732820_30732988_30733077_30733191_30733441
transcript_164.known	SIRV6	+	1311	6	FSM	SIRV6A	SIRV613	1311	6	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_2	9686.74001715748	1167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAGAAGACCGGGAGTATAC	NA	False	NA	NA	False	NA	NA	NA	3105	11824	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6_+_3165_7104_7449_7805_7924_10724_10819_11031_11109_11205
transcript_16403.known	chr14	-	702	4	FSM	ENSMUSG00000021917.17	ENSMUST00000228736.2	702	4	0	0	0	0	multi-exon	FALSE	canonical	3	1717	junction_2	34.7658836600865	906	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACATTTGTTTTCTTTTT	NA	False	NA	-5	True	AATAAA	-16	NA	30723320	30721783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_30722180_30722634_30722722_30722800_30722861_30723161
transcript_16405.known	chr14	-	378	3	FSM	ENSMUSG00000021917.17	ENSMUST00000227838.2	378	3	0	0	0	0	multi-exon	FALSE	canonical	3	1787	junction_2	3.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTCCATGGCCTATCTA	NA	False	NA	NA	False	AATAAA	-34	NA	30723307	30722173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_30722180_30722634_30722861_30723161
transcript_16407.known	chr14	-	592	3	FSM	ENSMUSG00000021917.17	ENSMUST00000226374.2	592	3	0	0	0	0	multi-exon	FALSE	canonical	3	1717	junction_1	35	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCTTAAAACTTGTATGTG	NA	False	NA	NA	False	GGGGCT	-35	NA	30723324	30722352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_30722722_30722800_30722861_30723161
transcript_16408.known	chr14	-	1241	2	FSM	ENSMUSG00000021917.17	ENSMUST00000226290.2	1241	2	0	0	0	0	multi-exon	FALSE	canonical	3	1787	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACATTTGTTTTCTTTT	NA	False	NA	-6	True	AATAAA	-15	NA	30723326	30721784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_30722861_30723161
transcript_16413.known	chr14	-	1765	15	FSM	ENSMUSG00000042354.8	ENSMUST00000226740.2	1765	15	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_10	235.33125806065	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30740975	30734389	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738350_30738769_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
transcript_16414.nic	chr14	-	1845	15	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	108	junction_10	218.114789100808	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30741069	30734389	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738350_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
transcript_16416.nic	chr14	-	1921	15	NIC	ENSMUSG00000042354.8	novel	1947	15	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_10	231.923511757912	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30741069	30734389	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738769_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
transcript_16418.known	chr14	-	1947	15	FSM	ENSMUSG00000042354.8	ENSMUST00000037739.8	1947	15	0	0	0	0	multi-exon	FALSE	canonical	3	775	junction_10	82.9678140200482	784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTTTAAGATTTATTTAT	NA	False	NA	-1	True	AATAAA	-20	NA	30741109	30734389	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_30734592_30734679_30734747_30735123_30735282_30735385_30735523_30735609_30735753_30736009_30736185_30736546_30736635_30736862_30736984_30737231_30737342_30738278_30738412_30738783_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
transcript_16446.known	chr14	-	666	5	FSM	ENSMUSG00000042354.8	ENSMUST00000227170.2	666	5	0	0	0	0	multi-exon	FALSE	canonical	3	853	junction_4	51.3048486987341	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGGCATGCATTTCCCAA	NA	False	NA	NA	False	NA	NA	NA	30741001	30738622	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_30738865_30739013_30739125_30739232_30739371_30739764_30739824_30740885
transcript_16450.known	chr14	-	311	2	FSM	ENSMUSG00000058351.12	ENSMUST00000049732.11	311	2	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	0	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATTTCAGCCATTTT	NA	False	NA	-11	True	AATAAA	-18	NA	30850795	30846461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_30846567_30850589
transcript_16451.known	chr14	-	426	2	FSM	ENSMUSG00000058351.12	ENSMUST00000090205.5	426	2	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAATAAAAATATTTTAA	NA	False	NA	NA	False	NA	NA	NA	30850860	30846635	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_30846791_30850589
transcript_16454.known	chr14	-	2780	14	FSM	ENSMUSG00000021910.16	ENSMUST00000172142.8	2780	14	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_1	267.283529621824	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACATCTTTTTCCTTT	9296	False	NA	3	True	AATAAA	-20	NA	30928783	30905269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_30906355_30906898_30907008_30907268_30907383_30908715_30908845_30909015_30909202_30909606_30909676_30910595_30910752_30911687_30911784_30912952_30913049_30913341_30913506_30914537_30914587_30925183_30925367_30926398_30926483_30928523
transcript_16455.nic	chr14	-	1277	8	ISM	ENSMUSG00000021910.16	ENSMUST00000164989.8	2276	11	-16	2614	-15	0	5prime_fragment	FALSE	canonical	3	935	junction_3	91.9329835771023	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAATGAATCTTAAAAAA	9406	False	NA	NA	False	NA	NA	NA	30928673	30910296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_30910752_30911687_30911784_30912952_30913049_30913341_30913506_30914537_30914587_30925183_30925367_30926398_30926483_30928523
transcript_16456.nnic	chr14	-	624	4	NNC	ENSMUSG00000021910.16	novel	1763	3	NA	NA	-15	5525	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	532.482863574031	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAACTCTCTGTGTTTTC	9406	False	NA	NA	False	ATTAAA	-16	NA	30928673	30917375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_30917583_30925183_30925367_30926398_30926483_30928523
transcript_16457.known	chr14	-	2084	11	FSM	ENSMUSG00000021902.8	ENSMUST00000022459.5	2084	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	8.85945822271317	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGGTCTCCTTGTGAATT	NA	False	NA	-3	True	AATAAA	-14	NA	30973274	30959651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_30960111_30960293_30960440_30961076_30961194_30961587_30961695_30962230_30962391_30962815_30962941_30963682_30963785_30969999_30970092_30970951_30971005_30971564_30971675_30972661
transcript_16458.known	chr14	-	1971	10	FSM	ENSMUSG00000021902.8	ENSMUST00000226565.2	1971	10	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	5.27280467453541	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTTGTGAATTGGCTCT	NA	False	NA	3	True	AATAAA	-20	NA	30973272	30959645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_30960111_30960293_30960440_30961587_30961695_30962230_30962391_30962815_30962941_30963682_30963785_30969999_30970092_30970951_30971005_30971564_30971675_30972661
transcript_16460.known	chr14	+	3460	17	FSM	ENSMUSG00000021901.11	ENSMUST00000022458.11	3460	17	0	0	0	0	multi-exon	TRUE	canonical	3	305	junction_12	31.9899886683318	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGAGGTCGGTAGGCTGG	NA	False	NA	25	True	AATAAA	-32	NA	30973406	30981901	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_30973612_30973706_30973737_30973856_30973912_30974884_30975018_30975412_30975533_30975989_30976052_30976123_30976267_30976517_30976597_30977042_30977167_30977469_30977618_30978067_30978253_30978617_30978749_30979245_30979725_30979837_30979999_30980240_30980334_30980414_30980488_30980662
transcript_16465.known	chr14	+	3648	21	FSM	ENSMUSG00000021893.15	ENSMUST00000022451.14	3648	21	0	0	0	0	multi-exon	TRUE	canonical	3	214	junction_6	22.7354348979737	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGTAGTTTAATGTCCAG	NA	False	NA	15	True	AATAAA	-20	NA	31058594	31093941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_31058941_31061991_31062101_31066398_31066557_31067415_31067484_31069614_31069816_31071755_31071843_31074323_31074451_31076051_31076138_31077221_31077316_31080562_31080710_31081163_31081271_31082081_31082203_31085435_31085581_31086404_31086505_31087412_31087549_31088124_31088201_31090012_31090159_31091154_31091218_31091677_31091809_31092658_31092752_31092834
transcript_16469.known	chr14	+	4918	6	FSM	ENSMUSG00000021890.7	ENSMUST00000022446.7	4918	6	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_4	16.2357629940819	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTAAAAAAAAAAAAAAGAAT	5602	False	NA	NA	False	NA	NA	NA	31216355	31231815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_31217329_31219665_31219761_31222076_31222214_31224219_31224411_31226243_31226478_31228527
transcript_16471.known	chr14	-	3946	6	FSM	ENSMUSG00000021891.9	ENSMUST00000055303.5	3946	6	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_5	24.3359815910516	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTGTTTCTTGATGTCTT	NA	False	NA	NA	False	NA	NA	NA	31216997	31198776	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_31201768_31204747_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
transcript_16476.known	chr14	-	1027	5	FSM	ENSMUSG00000021891.9	ENSMUST00000227595.2	1027	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	105.354164606816	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGCATGTGTTATTTT	NA	False	NA	NA	False	NA	NA	NA	31216978	31201541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_31201768_31204747_31204890_31209527_31209699_31215553_31215922_31216858
transcript_16477.known	chr14	-	793	5	FSM	ENSMUSG00000021891.9	ENSMUST00000228181.2	793	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	108.841628065736	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTTATGAAGAAGTGGTGA	NA	False	NA	NA	False	NA	NA	NA	31216949	31201739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_31201768_31209527_31209699_31214278_31214414_31215553_31215922_31216858
transcript_16479.known	chr14	+	627	3	FSM	ENSMUSG00000021890.7	ENSMUST00000228952.2	627	3	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_1	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGTACATTTTTTTCAAAT	6399	False	NA	NA	False	NA	NA	NA	31217152	31222432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_31217329_31219665_31219761_31222076
transcript_16480.known	chr14	-	2388	5	FSM	ENSMUSG00000021891.9	ENSMUST00000228727.2	2388	5	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_4	24.3823706804732	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAGACCTCTTTATATGTA	NA	False	NA	NA	False	NA	NA	NA	31216987	31203304	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_31204890_31209527_31209699_31214278_31214414_31215553_31215922_31216858
transcript_16481.known	chr14	-	2644	17	FSM	ENSMUSG00000021884.19	ENSMUST00000022437.16	2644	17	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_9	6.10199762372946	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGATTTTCCCCAGTACT	6945	False	NA	NA	False	NA	NA	NA	31362921	31329155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362556_31362745
transcript_16482.nic	chr14	-	1915	17	NIC	ENSMUSG00000021884.19	novel	2644	17	NA	NA	-9	116	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	13.265910259006	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTTTTGTTTTGTTTT	6643	False	NA	NA	False	AGTAAA	-32	NA	31363223	31329809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_31330001_31332058_31332246_31336160_31336269_31337319_31337479_31338316_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362556_31363122
transcript_16487.nic	chr14	-	1472	13	ISM	ENSMUSG00000021884.19	ENSMUST00000022437.16	2644	17	3	9031	3	-8219	5prime_fragment	FALSE	canonical	3	36	junction_5	6.70147164600599	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAGATTTATTTCATTTA	6948	False	NA	NA	False	CATAAA	-17	NA	31362918	31338186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_31338472_31340928_31341031_31341801_31341886_31342959_31343066_31344795_31344932_31348296_31348410_31351989_31352085_31352917_31352996_31354852_31354926_31356155_31356237_31357700_31357742_31362450_31362556_31362745
transcript_16489.known	chr14	+	2324	4	FSM	ENSMUSG00000021900.11	ENSMUST00000090147.7	2324	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	7.40870359029762	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAATTATTCTGTCTGA	NA	False	NA	NA	False	AAAACA	-6	NA	31363013	31390536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_31363093_31384026_31384283_31387838_31387989_31388697
transcript_16491.known	chr14	+	689	3	FSM	ENSMUSG00000021900.11	ENSMUST00000128014.2	689	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	7.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCAGCTAACATCCACCACC	NA	False	NA	NA	False	NA	NA	NA	31362984	31389128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_31363093_31387838_31387989_31388697
transcript_16496.known	chr14	+	2376	8	FSM	ENSMUSG00000021906.15	ENSMUST00000022462.14	2376	8	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_6	23.2422908000191	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATGTTTAATGTTTCAG	NA	False	NA	20	True	AATACA	-19	NA	31807369	31825159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_31808011_31813592_31813717_31814024_31814089_31817321_31817429_31818443_31818586_31821345_31821589_31822942_31823052_31824213
transcript_16507.known	chr14	-	2953	3	FSM	ENSMUSG00000021905.15	ENSMUST00000067955.12	2953	3	0	0	0	0	multi-exon	FALSE	canonical	3	570	junction_1	6	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCATGTTTTCTTGAAG	NA	False	NA	-6	True	AATAAA	-13	NA	31807566	31802525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_31805204_31806863_31806939_31807366
transcript_16508.known	chr14	-	591	3	FSM	ENSMUSG00000021905.15	ENSMUST00000167796.2	591	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	281	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGAGTGTCTTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	31807649	31804828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_31805204_31806863_31806939_31807508
transcript_16509.known	chr14	-	3079	3	FSM	ENSMUSG00000021905.15	ENSMUST00000112001.9	3079	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_2	283	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCATGTTTTCTTGAAG	NA	False	NA	-6	True	AATAAA	-13	NA	31807566	31802525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_31805204_31806863_31807065_31807366
transcript_16510.known	chr14	-	809	2	FSM	ENSMUSG00000021905.15	ENSMUST00000124303.9	809	2	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCAGGAGTCCCAGGCAG	NA	False	NA	NA	False	NA	NA	NA	31807686	31804714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_31805204_31807366
transcript_16511.known	chr14	-	751	2	FSM	ENSMUSG00000021905.15	ENSMUST00000144149.2	751	2	0	0	0	0	multi-exon	FALSE	canonical	3	570	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATCCTGAGTGTCTTTTA	NA	False	NA	NA	False	NA	NA	NA	31807243	31804832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_31805204_31806863
transcript_16513.known	chr14	+	4065	10	FSM	ENSMUSG00000056234.16	ENSMUST00000163336.8	4065	10	0	0	0	0	multi-exon	TRUE	canonical	3	533	junction_6	51.0289194210886	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAAGCTATCACTTT	NA	False	NA	NA	False	NA	NA	NA	31881821	31901812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_31881968_31892704_31892860_31894259_31894401_31894563_31894653_31894845_31894955_31895357_31895448_31896346_31896491_31897895_31898913_31899189_31899331_31899779
transcript_16515.known	chr14	-	1173	7	FSM	ENSMUSG00000013701.14	ENSMUST00000013845.13	1173	7	0	0	0	0	multi-exon	FALSE	canonical	3	3717	junction_4	299.373048590253	3701	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTATCTCCATTTAATA	NA	False	NA	NA	False	AATAAA	-40	NA	31923855	31902118	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31915810_31915905_31920925_31920985_31923599
transcript_16518.known	chr14	-	682	6	FSM	ENSMUSG00000013701.14	ENSMUST00000163379.2	682	6	0	0	0	0	multi-exon	FALSE	canonical	2	27	junction_4	1693.07502491768	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATTAATAAGCCAGTCTGG	NA	False	NA	NA	False	NA	NA	NA	31923803	31902463	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_31902628_31911100_31911212_31913298_31913358_31915359_31915445_31920925_31920985_31923599
transcript_16520.known	chr14	-	777	4	FSM	ENSMUSG00000013701.14	ENSMUST00000170331.8	777	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	1998.03753718492	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTCCAAATTCAGGCCA	NA	False	NA	NA	False	NA	NA	NA	31923826	31902247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_31902628_31911100_31911212_31920925_31920985_31923599
transcript_16521.nic	chr14	+	3810	18	NIC	ENSMUSG00000021911.17	novel	4413	18	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	1	134	junction_15	101.735663996062	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCATGCCACTTATATTT	NA	False	NA	15	True	AATAAA	-28	NA	31923898	32019177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_31924143_31930113_31930181_31930668_31931632_31932411_31932596_31936280_31936404_31936523_31936608_31939616_31939692_31960487_31960581_31964145_31964304_31971973_31972054_31976492_31976554_31980034_31980111_31984640_31984789_31993586_31993666_31996806_31996916_32006055_32006162_32017155_32017285_32018146
transcript_16522.known	chr14	+	4413	18	FSM	ENSMUSG00000021911.17	ENSMUST00000022470.15	4413	18	0	0	0	0	multi-exon	FALSE	canonical	1	134	junction_15	83.8243756407233	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTGTTAGATGCTCTGA	NA	False	NA	NA	False	AATAAA	-23	NA	31923905	32019507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_31924423_31930113_31930181_31930668_31931632_31932411_31932596_31936280_31936404_31936523_31936608_31939616_31939692_31960487_31960581_31964145_31964304_31971973_31972054_31976492_31976554_31980034_31980111_31984640_31984789_31993586_31993666_31996806_31996916_32006055_32006162_32017155_32017285_32018146
transcript_16525.known	chr14	-	1833	2	FSM	ENSMUSG00000115691.2	ENSMUST00000226980.2	1833	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	32039942	32025618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_32027353_32039843
transcript_16526.nnic	chr14	+	3669	24	NNC	ENSMUSG00000021913.9	novel	3723	24	NA	NA	-37	0	at_least_one_novel_splicesite	TRUE	canonical	2	5	junction_1	115.755707172092	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGGCCTCCTTTCCTA	NA	False	NA	12	True	AATAAA	-18	NA	32043938	32070108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_32043983_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
transcript_16527.known	chr14	+	3723	24	FSM	ENSMUSG00000021913.9	ENSMUST00000228529.2	3723	24	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_11	40.4855688541514	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTGGCCTCCTTTCCTA	NA	False	NA	12	True	AATAAA	-18	NA	32043975	32070108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_32044074_32045835_32045905_32047750_32047956_32048935_32049107_32054137_32054241_32054442_32054559_32054704_32054860_32055666_32055814_32057291_32057383_32059398_32059579_32059711_32059841_32061163_32061344_32061859_32062013_32062601_32062705_32063158_32063288_32063996_32064148_32065159_32065288_32066280_32066460_32066670_32066743_32066839_32066966_32067066_32067140_32068354_32068519_32068655_32068811_32069462
transcript_16530.known	chr14	-	2587	12	FSM	ENSMUSG00000021936.15	ENSMUST00000022504.12	2587	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.14655787270487	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATAGTAGCACACAGCC	NA	False	NA	NA	False	TTTAAA	-22	NA	33169102	33103005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_33104277_33105830_33105909_33108518_33108583_33109128_33109254_33110756_33110940_33112198_33112271_33114898_33115065_33124580_33124720_33124821_33124881_33130004_33130135_33132812_33132982_33168971
transcript_16533.known	chr14	+	1880	12	FSM	ENSMUSG00000021950.16	ENSMUST00000022519.15	1880	12	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.55345522642137	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGTGGATTTGTGGGG	NA	False	NA	NA	False	CATAAA	-19	NA	33807937	33822528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_33808034_33811467_33811559_33812563_33812659_33813757_33813872_33814486_33814578_33815334_33815415_33815840_33815901_33816354_33816449_33816679_33816776_33818486_33818546_33819813_33819937_33821647
transcript_16534.known	chr14	+	468	1	FSM	ENSMUSG00000078126.5	ENSMUST00000104925.5	468	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6019	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCCAGATGGCT	2274	False	NA	NA	False	NA	NA	NA	33892611	33893079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_33892600_33893100
transcript_16537.known	chr14	-	3317	11	FSM	ENSMUSG00000041471.10	ENSMUST00000111917.3	3317	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_8	23.9376272842569	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGAAGCTTTTATTAT	NA	False	NA	-14	True	AATATA	-33	NA	34032323	33958989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_33959544_33960794_33960911_33963243_33963473_33967118_33967326_33970840_33970976_33971133_33971329_33981581_33981690_33989457_33990910_33991427_33991494_34030996_34031052_34032123
transcript_16541.known	chr14	+	3390	13	FSM	ENSMUSG00000021794.17	ENSMUST00000022322.17	3390	13	0	0	0	0	multi-exon	FALSE	canonical	3	1379	junction_7	93.7817723938577	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAAGTTCTCTATGGGGAC	NA	False	NA	13	True	AATAAA	-22	NA	34032683	34067222	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_34033300_34041838_34041920_34043724_34043781_34047469_34047534_34051245_34051341_34056068_34056249_34057258_34057397_34058049_34058188_34058452_34058534_34060716_34060841_34061883_34061976_34064075_34064139_34065560
transcript_16549.known	chr14	-	408	3	FSM	ENSMUSG00000043681.6	ENSMUST00000052126.6	408	3	0	0	0	0	multi-exon	FALSE	canonical	3	2248	junction_2	168.5	1266	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGAGTTTACCTCTGTT	NA	False	NA	-6	True	AATAAA	-21	NA	34077390	34073837	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_34074035_34075654_34075718_34077242
transcript_16550.known	chr14	-	852	5	FSM	ENSMUSG00000023064.5	ENSMUST00000023826.5	852	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	6.72681202353685	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGTGCTTCTTCTTTGTGC	5954	False	NA	NA	False	AATAAA	-19	NA	34096746	34092230	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_34092523_34092813_34092874_34095212_34095341_34095627_34095670_34096416
transcript_16551.nnic	chr14	+	901	3	Antisense	novelGene_ENSMUSG00000023064.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	9	junction_2	2	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGGTGGTCTCGTGCCC	1268	False	NA	-42	True	NA	NA	NA	34087285	34096866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr14_+_34087676_34088315_34088446_34096485
transcript_16553.nnic	chr14	+	957	3	Antisense	novelGene_ENSMUSG00000023064.5_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	9	junction_2	2	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCCTCAGTGTCCCAGG	1268	False	NA	14	True	AAGAAA	-15	NA	34087285	34096922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr14_+_34087676_34088315_34088446_34096485
transcript_16555.known	chr14	+	3974	7	FSM	ENSMUSG00000041445.10	ENSMUST00000111908.3	3974	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	15.3260852434302	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGCCTGTTTACTGTTG	4890	False	NA	6	True	AATAAA	-16	NA	34097421	34126244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_34097736_34118121_34118251_34118328_34118436_34118515_34118597_34119503_34119678_34119786_34121581_34124869
transcript_16556.known	chr14	-	7509	11	FSM	ENSMUSG00000058690.15	ENSMUST00000090024.11	7509	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	23.4444023169711	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTCTCCACAGCTTGT	NA	False	NA	NA	False	AATAAA	-27	NA	36690734	36596892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_36601720_36612298_36612384_36618211_36618302_36620120_36620208_36622718_36622803_36630973_36631170_36640390_36640554_36648795_36648887_36660540_36660738_36661768_36663222_36690498
transcript_16557.known	chr14	-	754	3	FSM	ENSMUSG00000096001.3	ENSMUST00000179488.3	754	3	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_2	2.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTGGAGCATCCTTGT	NA	False	NA	NA	False	AATAAA	-21	NA	36832058	36824098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_36824649_36829330_36829412_36831935
transcript_16562.known	chr14	-	2573	9	FSM	ENSMUSG00000041028.17	ENSMUST00000042564.17	2573	9	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	1775.59757106587	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTATTGCTGTACTT	NA	False	NA	-18	True	AATAAA	-11	NA	36857096	36842780	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36856921
transcript_16570.known	chr14	-	3188	9	FSM	ENSMUSG00000041028.17	ENSMUST00000165649.4	3188	9	0	0	0	0	multi-exon	FALSE	canonical	3	4955	junction_4	366.305861780835	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACTTAGTTGGGTAGTGG	NA	False	NA	NA	False	AATAAA	-25	NA	36857209	36842048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_36844184_36847116_36847289_36847858_36848048_36849543_36849653_36852592_36852735_36853494_36853607_36855127_36855228_36855589_36855761_36857151
transcript_16573.known	chr14	-	1150	4	FSM	ENSMUSG00000037833.15	ENSMUST00000225854.2	1150	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	4.71404520791032	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGTTGCCAATAATTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	40615223	40582339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_40582697_40594486_40594635_40596036_40596197_40614738
transcript_16575.known	chr14	-	2475	9	FSM	ENSMUSG00000037824.7	ENSMUST00000047652.6	2475	9	0	0	0	0	multi-exon	TRUE	canonical	3	610	junction_1	26.6868413267663	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGGTGATAAATTGAGC	NA	False	NA	49	True	ATTAAA	-18	NA	40688764	40628401	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40656144_40656243_40688732
transcript_16578.nnic	chr14	-	2389	8	NIC	ENSMUSG00000037824.7	novel	2475	9	NA	NA	-86	-72	combination_of_known_splicesites	FALSE	canonical	2	11	junction_7	223.728607459838	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGTTGTTTGGGTCTTTT	NA	False	NA	-25	True	AATATA	-13	NA	40688850	40628475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_40630087_40631541_40631662_40633069_40633115_40635318_40635445_40637336_40637508_40638759_40638907_40640586_40640638_40688732
transcript_16582.nic	chr14	-	1638	6	NIC	ENSMUSG00000021792.16	novel	1537	6	NA	NA	-16	0	combination_of_known_junctions	TRUE	canonical	3	24	junction_5	120.659852477947	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATCACCTCTGTGCACA	NA	False	NA	-22	True	AATAAA	-11	NA	40735761	40715696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726161_40735582
transcript_16583.known	chr14	-	1537	6	FSM	ENSMUSG00000021792.16	ENSMUST00000022317.15	1537	6	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_5	72.4911029023562	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATCACCTCTGTGCACA	NA	False	NA	-22	True	AATAAA	-11	NA	40735732	40715696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726161_40735654
transcript_16584.nic	chr14	-	1655	6	NIC	ENSMUSG00000021792.16	novel	1567	6	NA	NA	-16	0	combination_of_known_junctions	TRUE	canonical	3	17	junction_5	123.38816799029	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATCACCTCTGTGCACA	NA	False	NA	-22	True	AATAAA	-11	NA	40735761	40715696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726178_40735582
transcript_16585.known	chr14	-	1567	6	FSM	ENSMUSG00000021792.16	ENSMUST00000118466.8	1567	6	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_5	66.6111101844129	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATCACCTCTGTGCACA	NA	False	NA	-22	True	AATAAA	-11	NA	40735745	40715696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_40716595_40719669_40719835_40720800_40720942_40724392_40724485_40725997_40726178_40735654
transcript_16590.known	chr14	+	107	1	FSM	ENSMUSG00000119656.1	ENSMUST00000239681.1	107	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAGTGGGAGACTTCAA	NA	False	NA	NA	False	NA	NA	NA	40969642	40969749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_40969600_40969700
transcript_16604.nnic	chr14	+	1992	5	NNC	ENSMUSG00000091110.2	novel	1760	5	NA	NA	-14082	-336	at_least_one_novel_splicesite	TRUE	canonical	3	3	junction_3	8.44097150806707	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACC	NA	False	NA	NA	False	AATAAA	-15	NA	40986679	41010436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_40987404_41001646_41001810_41002809_41002942_41003619_41003802_41009645
transcript_16629.nnic	chr14	+	1889	7	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4489	0	intron_retention	TRUE	canonical	3	21	junction_4	63.0672040146241	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	41761462	41825778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_41761595_41761988_41762060_41765841_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
transcript_16631.nnic	chr14	+	1619	7	NNC	ENSMUSG00000052334.12	novel	1576	5	NA	NA	-4489	0	intron_retention	FALSE	canonical	3	21	junction_4	63.2262252198845	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	41761462	41825778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_41761595_41761988_41762060_41766111_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
transcript_16634.nnic	chr14	+	1444	6	NNC	ENSMUSG00000052334.12	novel	1573	6	NA	NA	-4489	0	intron_retention	FALSE	canonical	3	16	junction_2	75.7770413779794	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	41761462	41825778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_41761595_41761988_41762060_41818127_41818291_41819245_41819378_41820058_41820240_41825013
transcript_16639.known	chr14	+	1576	5	FSM	ENSMUSG00000052334.12	ENSMUST00000064162.11	1576	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	25.043711785596	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	41765951	41825778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_41766287_41818127_41818291_41819245_41819378_41820058_41820240_41825013
transcript_16648.nnic	chr14	+	1440	4	Fusion	ENSMUSG00000094151.2_ENSMUSG00000115262.2	novel	690	2	NA	NA	-297	-336	multi-exon	FALSE	canonical	0	0	junction_1	11.6714276000077	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	42988563	43045109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr14_+_42988898_43039360_43039493_43040175_43040358_43044317
transcript_16653.nnic	chr14	+	1413	5	NNC	ENSMUSG00000115483.2	novel	1591	4	NA	NA	-3325	-336	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	20.897069172494	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	43129167	43163125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_43129304_43132645_43132821_43157302_43157435_43158114_43158297_43162337
transcript_16658.nnic	chr14	+	1350	5	NNC	ENSMUSG00000115483.2	novel	1591	4	NA	NA	-3315	-336	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	24.3874967965144	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTTAAGAAACT	NA	False	NA	NA	False	AATAAA	-15	NA	43129177	43163125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_43129282_43132676_43132821_43157302_43157435_43158114_43158297_43162337
transcript_16674.known	chr14	+	1591	4	FSM	ENSMUSG00000115483.2	ENSMUST00000228505.2	1591	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	11.5854314646552	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAAGCTCTAGAAAACA	NA	False	NA	NA	False	AATAAA	-18	NA	43132674	43163468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_43132821_43157302_43157435_43158114_43158297_43162337
transcript_16675.nnic	chr14	+	2075	8	NNC	ENSMUSG00000090788.3	novel	1387	5	NA	NA	-73742	0	at_least_one_novel_splicesite	TRUE	canonical	2	10	junction_5	48.8128454154336	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTAAGAAACTT	NA	False	NA	NA	False	AATAAA	-15	NA	43169928	43251481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_43170061_43170454_43170526_43173084_43173568_43243668_43243801_43244528_43244692_43245648_43245781_43246462_43246644_43250700
transcript_16677.nnic	chr14	+	1735	8	NNC	ENSMUSG00000090788.3	novel	1387	5	NA	NA	-73742	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_5	49.2250143810678	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTAAGAAACTT	NA	False	NA	NA	False	AATAAA	-15	NA	43169928	43251481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_43170061_43170454_43170526_43173424_43173568_43243668_43243801_43244528_43244692_43245648_43245781_43246462_43246644_43250700
transcript_16682.nnic	chr14	+	1620	5	NNC	ENSMUSG00000091477.2	novel	1314	4	NA	NA	-45977	-29	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_1	10.8714074525794	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	43735055	43788641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_43735407_43781959_43782123_43783111_43783244_43783926_43784109_43787849
transcript_16683.nnic	chr14	+	1457	4	NNC	ENSMUSG00000091477.2	novel	1314	4	NA	NA	-45977	-29	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	7.87400787401181	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTCTTCACTCTTAAGAAA	NA	False	NA	NA	False	AATAAA	-13	NA	43735055	43788641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_43735407_43783111_43783244_43783926_43784109_43787849
transcript_16687.known	chr14	+	1647	1	FSM	ENSMUSG00000049235.9	ENSMUST00000094051.6	1647	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	76	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAGGAAGAGAAAGTGGTT	NA	False	NA	NA	False	NA	NA	NA	43951188	43952835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_43951200_43952800
transcript_16690.known	chr14	-	1586	5	FSM	ENSMUSG00000072574.5	ENSMUST00000227180.2	1586	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.866025403784439	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTCACTCTAAGAAACTT	NA	False	NA	NA	False	AATAAA	-15	NA	44772816	44709972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_44710757_44714789_44714972_44716348_44716512_44717238_44717371_44772491
transcript_16693.known	chr14	-	4418	16	FSM	ENSMUSG00000021831.10	ENSMUST00000022378.9	4418	16	0	0	0	0	multi-exon	FALSE	canonical	2	315	junction_8	121.531596257471	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGGTCTTTGGTCAGTT	NA	False	NA	89	True	AATAAA	-20	NA	45556029	45520543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_45523546_45525189_45525324_45525432_45525520_45529818_45529889_45530387_45530635_45531760_45531854_45531967_45531995_45533428_45533441_45536502_45536541_45537298_45537420_45539149_45539224_45539305_45539380_45541005_45541045_45542705_45542790_45543968_45544089_45555833
transcript_167.known	SIRV6	+	485	4	FSM	SIRV6A	SIRV609	485	4	0	0	0	0	multi-exon	FALSE	canonical	3	15063	junction_3	5493.41668626083	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACAAGTCAAGCCATTGC	NA	False	NA	NA	False	NA	NA	NA	1137	2120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6_+_1187_1468_1535_1640_1736_1845
transcript_16703.known	chr14	+	2234	14	FSM	ENSMUSG00000021832.9	ENSMUST00000022380.9	2234	14	0	0	0	0	multi-exon	FALSE	canonical	3	1632	junction_5	93.5359944006622	1418	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATAAATGATCCAGCTAGG	NA	False	NA	NA	False	AATAAA	-39	NA	45567244	45587162	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_45567390_45568286_45568367_45568443_45568484_45569362_45569416_45572109_45572178_45572373_45572489_45574934_45575023_45578086_45578149_45578229_45578354_45578738_45578801_45580857_45580979_45581103_45581185_45584200_45584273_45586039
transcript_16723.known	chr14	-	710	7	FSM	ENSMUSG00000037722.9	ENSMUST00000226276.2	710	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	556.682260260635	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTTAAATAACTGTTTTAG	NA	False	NA	NA	False	AGTAAA	-29	NA	45626250	45615766	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_45615944_45618393_45618456_45619012_45619141_45619469_45619536_45620850_45620914_45622037_45622206_45626204
transcript_16726.known	chr14	-	2788	6	FSM	ENSMUSG00000037722.9	ENSMUST00000046191.9	2788	6	0	0	0	0	multi-exon	FALSE	canonical	3	1091	junction_1	71.0419594324368	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGATCCATCAGGTAAC	NA	False	NA	NA	False	ATTAAA	-11	NA	45626418	45613790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626204
transcript_16731.nnic	chr14	-	1520	6	NNC	ENSMUSG00000037722.9	novel	2788	6	NA	NA	-33	703	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_5	472.912930675405	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTTGTCTTGTGTTTTT	NA	False	NA	-1	True	ATTAAA	-30	NA	45626451	45614907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_45615944_45618393_45618456_45619012_45619141_45620850_45620914_45622037_45622206_45626388
transcript_16741.known	chr14	+	4168	10	FSM	ENSMUSG00000053205.10	ENSMUST00000226785.2	4168	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	83.3410366809877	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTTGCAATGATTGAGAAG	NA	False	NA	-5	True	ATTAAA	-16	NA	45588633	45614340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_45588987_45592402_45592436_45594169_45594224_45604055_45604117_45605138_45605176_45605763_45605804_45605877_45605929_45608475_45608549_45609841_45609936_45610968
transcript_16742.known	chr14	-	3293	15	FSM	ENSMUSG00000037712.18	ENSMUST00000045905.15	3293	15	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_11	31.8875575504085	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTCTTTTGTACTTCTG	NA	False	NA	-5	True	AATAAA	-20	NA	45767575	45696251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_45697481_45699223_45699366_45699572_45699698_45702180_45702403_45702540_45702648_45704794_45704920_45705959_45706010_45706696_45706832_45710228_45710337_45713029_45713133_45713344_45713571_45719888_45720024_45741953_45742188_45766881_45767049_45767390
transcript_16748.known	chr14	+	750	2	FSM	ENSMUSG00000044285.9	ENSMUST00000227415.2	750	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACTCCAGAAAATCAAATAA	NA	False	NA	NA	False	NA	NA	NA	46321484	46322457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_46321774_46321996
transcript_16750.known	chr14	-	2064	4	FSM	ENSMUSG00000021835.16	ENSMUST00000074077.12	2064	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	6.0184900284226	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGACCTTTCTATCTTAT	6365	False	NA	NA	False	AATAAA	-25	NA	46628126	46620976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_46622170_46623171_46623552_46624612_46624738_46627760
transcript_16754.known	chr14	+	1726	1	FSM	ENSMUSG00000086746.3	ENSMUST00000228667.2	1726	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTTTCATCTCCTGGTA	NA	False	NA	NA	False	ATTAAA	-16	NA	46625009	46626735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_46625000_46626700
transcript_16755.known	chr14	+	917	8	FSM	ENSMUSG00000037628.11	ENSMUST00000067426.6	917	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	72.4563204099335	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCCAGCTAGACATACACT	NA	False	NA	72	True	NA	NA	NA	46997997	47009126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_46998106_46999984_47000068_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007292_47007394_47008857
transcript_16763.known	chr14	+	634	7	FSM	ENSMUSG00000037628.11	ENSMUST00000226621.2	634	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	78.2254576351089	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCAAGTTCTCCAGCATAG	NA	False	NA	2	True	AATAAA	-17	NA	46998051	47008977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_46998106_47001980_47002037_47002452_47002498_47004632_47004856_47006322_47006355_47007289_47007394_47008857
transcript_16765.known	chr14	-	1538	5	FSM	ENSMUSG00000015759.12	ENSMUST00000015903.12	1538	5	0	0	0	0	multi-exon	FALSE	canonical	3	505	junction_4	16.1322658049017	695	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTACATTGTCTATTTTC	NA	False	NA	NA	False	AATAAA	-31	NA	47025868	47013023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_47014007_47016345_47016490_47017569_47017683_47021568_47021638_47025639
transcript_16768.known	chr14	-	4171	7	FSM	ENSMUSG00000062014.14	ENSMUST00000111817.8	4171	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	212.21091447478	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTAGTGTTTTATTTTTT	NA	False	NA	-2	True	AATAAA	-18	NA	47059699	47045605	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_47049281_47051700_47051775_47052361_47052445_47053055_47053106_47053634_47053685_47054842_47054940_47059557
transcript_16771.known	chr14	+	1324	6	FSM	ENSMUSG00000055128.16	ENSMUST00000068532.10	1324	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	10.2097992144802	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGACACTGTCTTTGTC	537	False	NA	14	True	AATAAA	-24	NA	47069581	47091650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_47069837_47077613_47077754_47083330_47083509_47083641_47083790_47090835_47090944_47091155
transcript_16772.known	chr14	+	419	2	FSM	ENSMUSG00000055128.16	ENSMUST00000140114.3	419	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGTAGACGTGAAGATGA	631	False	NA	NA	False	ATTAAA	-23	NA	47069675	47077871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_47069837_47077613
transcript_16773.known	chr14	+	873	4	FSM	ENSMUSG00000055128.16	ENSMUST00000133989.8	873	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_2	7.78888096369861	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTTTATCCTTCTGTGG	641	False	NA	NA	False	ATTAAA	-18	NA	47069685	47084045	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_47069837_47077613_47077754_47083330_47083509_47083641
transcript_16774.known	chr14	-	2775	6	FSM	ENSMUSG00000037580.11	ENSMUST00000089959.7	2775	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	5.3665631459995	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGTGGATGTTGTCTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	47426870	47391351	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_47393382_47394865_47394951_47396319_47396352_47403932_47403989_47406668_47406779_47426408
transcript_16775.known	chr14	-	4260	25	FSM	ENSMUSG00000037572.18	ENSMUST00000187531.8	4260	25	0	0	0	0	multi-exon	FALSE	canonical	1	98	junction_11	68.6814304516795	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGTCTTGCTATGGTTT	NA	False	NA	0	True	AATAAA	-20	NA	47514289	47478400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_47479270_47481259_47481399_47482441_47482570_47482743_47482915_47483289_47483334_47484837_47484892_47485242_47485356_47485452_47485671_47488216_47488349_47489374_47489490_47493560_47493718_47495977_47496116_47498796_47499039_47500895_47501081_47503130_47503316_47504437_47504631_47505528_47505671_47506112_47506220_47507591_47507685_47509592_47509689_47510323_47510375_47510568_47510681_47511369_47511522_47512200_47512313_47513977
transcript_16778.known	chr14	+	6877	2	FSM	ENSMUSG00000048379.10	ENSMUST00000065562.6	6877	2	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTCGTTTTTAAAGAT	NA	False	NA	NA	False	AATAAA	-28	NA	47514387	47533559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_47514679_47526973
transcript_16783.known	chr14	+	4542	4	FSM	ENSMUSG00000021840.18	ENSMUST00000166743.9	4542	4	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_2	12.2836838484589	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTTTCTTTGTGTATTT	9630	False	NA	7	True	AAGAAA	-18	NA	47535725	47560552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_47535863_47546023_47546046_47547871_47548571_47556868
transcript_16785.nic	chr14	+	1109	7	NIC	ENSMUSG00000050335.18	novel	646	5	NA	NA	29	0	combination_of_known_junctions	TRUE	canonical	2	5	junction_1	41.1055551801294	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATACCCATCGCTTTGGGG	NA	False	NA	1	True	AATAAA	-14	NA	47605236	47623251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_47605310_47605702_47605826_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
transcript_16787.known	chr14	+	1298	6	FSM	ENSMUSG00000050335.18	ENSMUST00000150290.9	1298	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	20.2286924935845	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGCCCTTTGATTTGGTG	NA	False	NA	NA	False	NA	NA	NA	47611345	47623545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_47611437_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
transcript_16788.known	chr14	+	1419	6	FSM	ENSMUSG00000050335.18	ENSMUST00000142734.8	1419	6	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	23.7941169199447	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAGGAAATACGCTGAAT	NA	False	NA	NA	False	AATAAA	-15	NA	47611269	47623617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_47611410_47616979_47617002_47617509_47617876_47619052_47619142_47622058_47622225_47622981
transcript_16791.known	chr14	-	2964	19	FSM	ENSMUSG00000037544.15	ENSMUST00000043296.10	2964	19	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_12	54.7968470301389	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTTCTTCGCATTGTTA	NA	False	NA	NA	False	NA	NA	NA	47655864	47625235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_47625581_47626868_47626916_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
transcript_16793.nic	chr14	-	2739	18	NIC	ENSMUSG00000037544.15	novel	2964	19	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_1	102.855729242771	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAAACATTCTTTTCTTC	NA	False	NA	NA	False	NA	NA	NA	47655699	47625244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_47625577_47627899_47628120_47629178_47629237_47631593_47631775_47633211_47633432_47635874_47635968_47636976_47637138_47638977_47639064_47643231_47643359_47643795_47643876_47645093_47645369_47647764_47647836_47648901_47649025_47649115_47649201_47650434_47650498_47651102_47651297_47653792_47654029_47655565
transcript_16794.known	chr14	+	664	4	FSM	ENSMUSG00000037536.15	ENSMUST00000228668.2	664	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	28.4526897771644	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCAAACCTGGGAACACG	NA	False	NA	NA	False	GGGGCT	-18	NA	47710032	47766966	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_47710175_47738250_47738328_47763661_47763772_47766631
transcript_16796.known	chr14	+	2993	3	FSM	ENSMUSG00000037536.15	ENSMUST00000168833.9	2993	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	10.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTCTGGTCTTAAAATA	NA	False	NA	10	True	AATAAA	-18	NA	47710075	47769415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_47710175_47763661_47763772_47766631
transcript_16798.known	chr14	+	2937	2	FSM	ENSMUSG00000037536.15	ENSMUST00000043112.9	2937	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATGAGGTCTGGTCTTAA	NA	False	NA	6	True	AATAAA	-14	NA	47710017	47769411	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_47710175_47766631
transcript_16815.known	chr14	+	4436	41	FSM	ENSMUSG00000021843.18	ENSMUST00000190252.7	4436	41	0	0	0	0	multi-exon	TRUE	canonical	3	128	junction_40	180.470106596633	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGACTCACTCTGATTG	NA	False	NA	17	True	AATAAA	-17	NA	47886767	47974014	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_47886897_47901212_47901773_47904752_47904891_47907581_47907756_47910396_47910528_47912206_47912324_47914141_47914283_47920839_47920947_47922177_47922311_47923712_47923801_47927405_47927573_47928365_47928435_47929895_47929934_47930860_47930952_47931331_47931401_47932066_47932105_47932219_47932302_47932959_47933029_47938076_47938112_47938525_47938617_47939131_47939201_47940585_47940624_47941643_47941735_47941876_47941946_47943219_47943258_47943864_47943956_47944698_47944737_47946258_47946350_47948298_47948359_47949930_47949966_47952088_47952180_47957652_47957743_47961426_47961508_47962108_47962199_47962334_47962428_47963385_47963458_47963682_47963767_47967796_47967881_47970683_47970780_47971611_47971722_47973556
transcript_16817.known	chr14	-	2144	4	FSM	ENSMUSG00000021848.17	ENSMUST00000118578.9	2144	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	16.8720676464584	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTGGGTCTAGTTTAAT	NA	False	NA	-3	True	ATTAAA	-14	NA	48902563	48895135	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_48896784_48898755_48898908_48899900_48900117_48902435
transcript_16823.known	chr14	-	1737	3	FSM	ENSMUSG00000021848.17	ENSMUST00000122009.8	1737	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	5.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACCGCTCATACGGAGTC	NA	False	NA	NA	False	TTTAAA	-13	NA	48900329	48895627	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_48896784_48898755_48898908_48899900
transcript_16828.known	chr14	-	12699	18	FSM	ENSMUSG00000061244.15	ENSMUST00000162175.9	12699	18	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_14	16.0953043938104	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAATAAAAAAAAATCC	NA	False	NA	NA	False	NA	NA	NA	49304110	49241546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_49251807_49252873_49253090_49253654_49253764_49254930_49255018_49256858_49256980_49260655_49260765_49270727_49270876_49272264_49272475_49273455_49273539_49274215_49274357_49274460_49274506_49275129_49275240_49276811_49276841_49279941_49280007_49286160_49286356_49288776_49288925_49289754_49289850_49303582
transcript_16832.nic	chr14	+	2477	9	NIC	ENSMUSG00000036291.7	novel	2544	9	NA	NA	-77	0	intron_retention	TRUE	canonical	3	13	junction_8	38.1042976578758	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAATGATTTCTTATGCT	NA	False	NA	NA	False	AATAAA	-9	NA	49303874	49328255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_49304322_49311005_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701_49323817_49327656
transcript_16834.known	chr14	+	6321	8	FSM	ENSMUSG00000036291.7	ENSMUST00000037473.6	6321	8	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_2	12.7487494384703	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACATAAATTTGTGACATAA	NA	False	NA	NA	False	NA	NA	NA	49303951	49328336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_49304322_49311005_49311652_49316151_49316380_49317692_49317833_49318292_49318379_49318467_49318587_49321315_49321413_49323701
transcript_16838.known	chr14	+	3514	2	FSM	ENSMUSG00000036291.7	ENSMUST00000228238.2	3514	2	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAAGAAGTTAGAAA	NA	False	NA	NA	False	ATTAAA	-38	NA	49303952	49314150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_49304322_49311005
transcript_16840.known	chr14	-	1758	3	FSM	ENSMUSG00000115737.2	ENSMUST00000226439.2	1758	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTATTGGGTCATTCTT	NA	False	NA	NA	False	AATAAA	-21	NA	49360169	49349577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_49351160_49359878_49360008_49360122
transcript_16841.known	chr14	-	8831	8	FSM	ENSMUSG00000036242.16	ENSMUST00000036972.14	8831	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	7.71693076346829	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTGTTTCTTCAATTTTA	NA	False	NA	NA	False	AATAAA	-19	NA	50020840	49913408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_49919874_49920068_49920204_49926723_49926756_49988875_49989140_50005865_50006058_50007835_50008085_50010318_50011697_50020724
transcript_16843.known	chr14	-	3100	8	FSM	ENSMUSG00000036242.16	ENSMUST00000118129.2	3100	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	11.3730795642829	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATTTATGCTTGCTTTCT	NA	False	NA	NA	False	CATAAA	-10	NA	50020828	49919124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_49919871_49920068_49920204_49926723_49926756_49988875_49989140_50005865_50006058_50007835_50008085_50010318_50011697_50020724
transcript_16845.known	chr14	-	1842	10	FSM	ENSMUSG00000006288.9	ENSMUST00000006451.8	1842	10	0	0	0	0	multi-exon	FALSE	canonical	3	788	junction_6	38.5313724991294	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTATAGTTCTGTCTCTTT	NA	False	NA	-6	True	ATTAAA	-21	NA	51022976	51002871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_51003480_51004599_51004745_51009572_51009788_51009930_51010078_51010733_51010791_51012747_51012840_51014718_51014870_51015213_51015426_51018931_51019065_51022894
transcript_16848.known	chr14	-	2366	4	FSM	ENSMUSG00000006288.9	ENSMUST00000226768.2	2366	4	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_3	1.69967317119759	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGAGAGCTGCTGGTCG	NA	False	NA	-1	True	AATAAA	-18	NA	51022952	51012906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_51014870_51015213_51015426_51018931_51019065_51022894
transcript_16849.known	chr14	-	2058	3	FSM	ENSMUSG00000006288.9	ENSMUST00000227934.2	2058	3	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAGGAAAAAGAAAAAAGGC	NA	False	NA	NA	False	NA	NA	NA	51022950	51013556	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_51015426_51018931_51019065_51022894
transcript_16854.nnic	chr14	-	1577	5	NNC	ENSMUSG00000071470.5	novel	1509	4	NA	NA	0	-2	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	80.7971998277168	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTTCTTTTCTTTTTG	8876	False	NA	-1	True	AATAAA	-18	NA	51033185	51026706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_51027470_51027592_51027663_51029429_51029764_51031014_51031332_51033092
transcript_16857.known	chr14	-	1509	4	FSM	ENSMUSG00000071470.5	ENSMUST00000095932.5	1509	4	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_1	17.4419672692682	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTCTTTTCTTTTTGGC	8876	False	NA	1	True	AATAAA	-20	NA	51033185	51026704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_51027470_51029429_51029764_51031014_51031332_51033092
transcript_16858.nnic	chr14	-	1469	4	NNC	ENSMUSG00000071470.5	novel	1509	4	NA	NA	0	-1	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	82.8908251188809	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTCTTTTCTTTTTGG	8876	False	NA	0	True	AATAAA	-19	NA	51033185	51026705	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_51027470_51029468_51029764_51031014_51031332_51033092
transcript_16859.nnic	chr14	-	1199	2	NNC	ENSMUSG00000071470.5	novel	444	3	NA	NA	5090	-4309	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	53	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTATGAGTTGTTCTT	1962	False	NA	0	True	AATAAA	-16	NA	51040099	51035570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_51036607_51039936
transcript_16860.nnic	chr14	-	1248	2	NNC	ENSMUSG00000071470.5	novel	444	3	NA	NA	5090	-4309	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTATGAGTTGTTCTT	1962	False	NA	0	True	AATAAA	-16	NA	51040099	51035570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_51036656_51039936
transcript_16861.nnic	chr14	-	364	2	NNC	ENSMUSG00000071470.5	novel	444	3	NA	NA	5090	-5193	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCCAGCTGCTTGAATT	1962	False	NA	NA	False	NA	NA	NA	51040099	51036454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_51036656_51039936
transcript_16862.nnic	chr14	-	308	2	NNC	ENSMUSG00000071470.5	novel	444	3	NA	NA	5090	-5249	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGAGATTGGGAGATTT	1962	False	NA	NA	False	NA	NA	NA	51040099	51036510	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_51036656_51039936
transcript_16863.nic	chr14	+	1846	16	NIC	ENSMUSG00000036023.7	novel	1894	16	NA	NA	36	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_5	194.893064696173	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045333	51058757	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052413_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
transcript_16865.known	chr14	+	1894	16	FSM	ENSMUSG00000036023.7	ENSMUST00000036126.7	1894	16	0	0	0	0	multi-exon	FALSE	canonical	3	692	junction_5	52.2695577431708	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGCTTCTTTGGGTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	51045297	51058758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052424_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
transcript_16870.nic	chr14	+	1880	16	NIC	ENSMUSG00000036023.7	novel	1894	16	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	196.861327391192	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045378	51058757	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_51045445_51047462_51047672_51047956_51048028_51049232_51049284_51052326_51052424_51052808_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
transcript_16875.known	chr14	+	2173	15	FSM	ENSMUSG00000036023.7	ENSMUST00000228672.2	2173	15	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_7	45.539397610134	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGCTTCTTTGGGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51045402	51058757	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_51045445_51047530_51047672_51047956_51048028_51049232_51049284_51052326_51052885_51053653_51053757_51054429_51054581_51054788_51054928_51056666_51056731_51056810_51056946_51057117_51057246_51057398_51057499_51057934_51058034_51058251_51058377_51058491
transcript_16881.nic	chr14	-	1504	10	ISM	ENSMUSG00000006281.9	ENSMUST00000006444.9	8171	55	40473	6	-16	0	3prime_fragment	FALSE	canonical	3	29	junction_7	7.57187779440036	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGAGTGTATGCCCGATT	NA	False	NA	-10	True	TATAAA	-18	NA	51067544	51061521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_51061748_51061961_51062067_51062188_51062407_51062512_51062619_51064269_51064367_51064512_51064657_51066361_51066487_51066624_51066762_51067119_51067250_51067328
transcript_16884.known	chr14	-	1308	11	FSM	ENSMUSG00000006289.15	ENSMUST00000006452.13	1308	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	238.07706735425	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTTGTGTTTTTCAGTT	NA	False	NA	-1	True	AATAAA	-24	NA	51162287	51153138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154688_51154768_51154839_51154961_51155292_51155389_51157072_51157249_51157386_51157507_51162120
transcript_16885.known	chr14	-	3388	11	FSM	ENSMUSG00000006289.15	ENSMUST00000159292.8	3388	11	0	0	0	0	multi-exon	TRUE	canonical	3	62	junction_9	170.895289578151	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAGCACTTACAGAGGACT	NA	False	NA	NA	False	ACTAAA	-37	NA	51162350	51151050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154688_51154768_51154910_51154961_51155292_51155389_51157072_51157249_51157386_51157507_51162120
transcript_16886.nic	chr14	-	1344	11	NIC	ENSMUSG00000006289.15	novel	3388	11	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_9	186.264355151489	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTTGTGTTTTTCAGTT	NA	False	NA	-1	True	AATAAA	-24	NA	51162366	51153138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154688_51154768_51154910_51154961_51155292_51155389_51157072_51157277_51157386_51157507_51162120
transcript_16890.nnic	chr14	-	1237	10	NIC	ENSMUSG00000006289.15	novel	3388	11	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	2	23	junction_5	240.470577754186	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTTGTGTTTTTCAGTT	NA	False	NA	-1	True	AATAAA	-24	NA	51162366	51153138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_51153356_51153608_51153708_51153798_51153875_51154070_51154162_51154256_51154323_51154910_51154961_51155292_51155389_51157072_51157249_51157386_51157507_51162120
transcript_16898.known	chr14	-	2755	7	FSM	ENSMUSG00000035953.15	ENSMUST00000160835.9	2755	7	0	0	0	0	multi-exon	FALSE	canonical	3	698	junction_6	55.5447767321305	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGTGTCCGTTAGTCAC	NA	False	NA	NA	False	TATAAA	-16	NA	51168306	51163524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51166658_51166765_51167040_51167148_51167590_51167782_51168069
transcript_16899.known	chr14	-	1594	7	FSM	ENSMUSG00000035953.15	ENSMUST00000049312.14	1594	7	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_6	212.437441772082	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTCCCACTTAACAACTT	NA	False	NA	-9	True	AATAAA	-18	NA	51168313	51164671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_51165495_51166277_51166369_51166462_51166516_51166658_51166765_51167040_51167148_51167590_51167782_51168090
transcript_169.known	SIRV6	+	574	4	FSM	SIRV6A	SIRV607	574	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10529.1711924538	675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGCAGTCAAGTCGTAG	NA	False	NA	NA	False	NA	NA	NA	1130	2540	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6_+_1187_1468_1736_1845_2027_2470
transcript_16901.known	chr14	+	655	5	FSM	ENSMUSG00000035960.15	ENSMUST00000136753.8	655	5	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	445.940298694792	661	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGTAAGACTGGAATACCGA	180	False	NA	NA	False	NA	NA	NA	51162425	51164008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_51162492_51162669_51162782_51162973_51163162_51163617_51163811_51163912
transcript_16905.known	chr14	+	2942	6	FSM	ENSMUSG00000115338.3	ENSMUST00000048615.13	2942	6	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	38.2015706483385	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAACCATGAAGGATCAGG	9030	False	NA	NA	False	NA	NA	NA	51181758	51190869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_51182051_51185308_51185479_51187714_51187819_51187999_51188176_51188288_51188480_51188860
transcript_16906.known	chr14	+	1372	6	FSM	ENSMUSG00000068417.9	ENSMUST00000095925.5	1372	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	36.6911433454996	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGACTTGCTTGTCTTGGTT	NA	False	NA	NA	False	NA	NA	NA	51193448	51202206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_51193686_51196971_51197142_51200561_51200666_51200846_51201023_51201135_51201327_51201712
transcript_16907.known	chr14	+	1518	2	FSM	ENSMUSG00000021876.16	ENSMUST00000022428.13	1518	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCGGGATTTGTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	51328533	51343604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_51328711_51342263
transcript_16908.known	chr14	-	992	2	FSM	ENSMUSG00000035896.6	ENSMUST00000080126.4	992	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTAGCCATAGCTCCCA	NA	False	NA	NA	False	AATAAA	-21	NA	51384242	51382454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_51383377_51384172
transcript_16912.known	chr14	+	1623	14	FSM	ENSMUSG00000004561.15	ENSMUST00000047899.13	1623	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	48.1261901412816	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGATGTTCTGATTGC	NA	False	NA	NA	False	AATAAA	-16	NA	52122298	52129325	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126675_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
transcript_16914.known	chr14	+	1461	13	FSM	ENSMUSG00000004561.15	ENSMUST00000164902.8	1461	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	49.8556248916141	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGGATGTAGAACAAGTGT	NA	False	NA	NA	False	NA	NA	NA	52122402	52129192	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126675_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823
transcript_16915.known	chr14	+	1430	13	FSM	ENSMUSG00000004561.15	ENSMUST00000165100.8	1430	13	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_7	37.728102552636	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCAGGAAGAGAGCTCTG	NA	False	NA	NA	False	NA	NA	NA	52122345	52129250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_52122481_52122607_52122762_52122844_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
transcript_16919.nic	chr14	+	1636	13	NIC	ENSMUSG00000004561.15	novel	1623	14	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_7	50.0157614046701	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGATGTTCTGATTGC	NA	False	NA	NA	False	AATAAA	-16	NA	52122368	52129325	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_52122481_52122607_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126603_52126675_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
transcript_16923.known	chr14	+	1513	12	FSM	ENSMUSG00000004561.15	ENSMUST00000163603.8	1513	12	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_6	39.3664706097011	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCAGGAAGAGAGCTCTG	NA	False	NA	NA	False	NA	NA	NA	52122345	52129250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_52122481_52122607_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52126294_52126984_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
transcript_16927.known	chr14	+	3404	11	FSM	ENSMUSG00000004561.15	ENSMUST00000166408.8	3404	11	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_8	17.3885019481265	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	52122391	52130496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_52122481_52122607_52122980_52124354_52124437_52124679_52124762_52125429_52125504_52126198_52127093_52127319_52127389_52128134_52128186_52128565_52128659_52128823_52129009_52129083
transcript_16930.known	chr14	+	2334	4	FSM	ENSMUSG00000072572.10	ENSMUST00000047726.12	2334	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	1.24721912892465	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACAGACTGCCTCACTGGC	NA	False	NA	NA	False	NA	NA	NA	52131066	52134202	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_52131372_52131545_52131677_52131912_52131964_52132355
transcript_16932.known	chr14	-	2099	16	FSM	ENSMUSG00000004558.16	ENSMUST00000004673.15	2099	16	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_14	42.8779145429854	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCGGGTCTGAATGCGCC	NA	False	NA	1	True	AATAAA	-28	NA	52150887	52142727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148542_52148585_52148922_52149004_52150779
transcript_16933.known	chr14	-	2103	15	FSM	ENSMUSG00000004558.16	ENSMUST00000111632.5	2103	15	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_6	11.1385064766607	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCATTGTTAATCCGGG	9982	False	NA	-11	True	AATAAA	-16	NA	52150945	52142739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148922_52149004_52150779
transcript_16934.nic	chr14	-	2195	15	NIC	ENSMUSG00000004558.16	novel	2103	15	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_14	33.5830526988156	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGCATTGTTAATCCGGG	9289	False	NA	-11	True	AATAAA	-16	NA	52151638	52142739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_52143764_52143969_52144022_52144146_52144183_52144405_52144454_52144702_52144755_52145041_52145087_52145524_52145629_52145786_52145844_52146024_52146112_52146330_52146392_52147514_52147578_52147771_52147893_52148136_52148243_52148922_52149004_52151380
transcript_16936.known	chr14	-	2933	5	FSM	ENSMUSG00000049295.18	ENSMUST00000067549.15	2933	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_4	128.195895020082	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	4694	False	NA	-7	True	AATAAA	-20	NA	52258190	52243538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52257979
transcript_16937.known	chr14	-	2812	4	FSM	ENSMUSG00000049295.18	ENSMUST00000228580.2	2812	4	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_3	140.753527684231	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCCTGTGTGTGTCTGCCT	4726	False	NA	-7	True	AATAAA	-20	NA	52258158	52243538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52257979
transcript_16938.nic	chr14	+	1029	3	ISM	ENSMUSG00000072571.4	ENSMUST00000100638.4	1234	7	1495	0	1441	0	3prime_fragment	FALSE	canonical	3	19	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGACGCCAGGCGCTG	NA	False	NA	23	True	AATAAA	-37	NA	52255816	52257251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_+_52256110_52256188_52256336_52256662
transcript_16940.known	chr14	-	3017	6	FSM	ENSMUSG00000049295.18	ENSMUST00000166169.4	3017	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	162.277540035582	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGGCCCTGTGTGTGTCT	5739	False	NA	-11	True	AATAAA	-16	NA	52257145	52243542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_52244605_52244820_52244953_52245684_52247120_52247426_52247516_52252404_52252510_52256951
transcript_16941.known	chr14	+	415	2	FSM	ENSMUSG00000072571.4	ENSMUST00000228408.2	415	2	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAAAGGGGCATCTCATT	NA	False	NA	NA	False	NA	NA	NA	52254350	52254879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_52254399_52254512
transcript_16954.known	chr14	-	2498	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228198.2	2498	9	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_5	1148.92795139643	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATATAAAAATGGCTTTTA	8754	False	NA	NA	False	GGGGCT	-20	NA	52341456	52311132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
transcript_16955.known	chr14	-	2535	9	FSM	ENSMUSG00000060373.16	ENSMUST00000228232.2	2535	9	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	1522.21910380865	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCAACTGTCTCCAAAAT	8749	False	NA	39	True	AATAAA	-15	NA	52341461	52312258	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52334778_52336002_52341345
transcript_16956.known	chr14	-	1683	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227458.2	1683	9	0	0	0	0	multi-exon	FALSE	canonical	3	633	junction_2	1099.6436638748	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATTTGAAGGAAAGACAAT	8750	False	NA	-18	True	AATAAA	-20	NA	52341460	52311909	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_52312618_52312711_52312870_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
transcript_16957.known	chr14	-	2847	9	FSM	ENSMUSG00000060373.16	ENSMUST00000111610.12	2847	9	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_5	1135.23408929612	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTTGGTATATACATCA	8725	False	NA	-31	True	AATAAA	-22	NA	52341485	52310833	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319245_52319361_52321571_52321849_52335471_52335498_52341345
transcript_16959.known	chr14	-	2617	9	FSM	ENSMUSG00000060373.16	ENSMUST00000227242.2	2617	9	0	0	0	0	multi-exon	FALSE	canonical	3	1744	junction_2	852.637149891441	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTAGAAGCTGGTGTGT	8748	False	NA	-38	True	AATAAA	-19	NA	52341462	52311001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52335471_52335498_52341345
transcript_16986.known	chr14	-	1301	8	FSM	ENSMUSG00000060373.16	ENSMUST00000227536.2	1301	8	0	0	0	0	multi-exon	FALSE	canonical	3	1725	junction_7	903.44372897739	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8784	False	NA	42	True	AATAAA	-18	NA	52341426	52312255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_52312618_52312711_52312894_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
transcript_16991.nic	chr14	-	1423	8	NIC	ENSMUSG00000060373.16	novel	2535	9	NA	NA	-84	0	combination_of_known_junctions	FALSE	canonical	3	1620	junction_2	930.149406475834	572	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAACTGTCTCCAAAATAAT	8641	False	NA	42	True	AATAAA	-18	NA	52341569	52312255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_52312618_52312711_52312873_52313069_52313184_52314859_52315021_52318716_52318765_52319284_52319361_52321571_52321849_52341345
transcript_17.known	ERCC-00051	+	258	1	FSM	ERCC-00051A	DQ516740	258	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	258	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00051_+_0_300
transcript_17015.known	chr14	-	4673	26	FSM	ENSMUSG00000035726.9	ENSMUST00000046709.9	4673	26	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_21	82.6076606617086	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTTATGACCATTT	NA	False	NA	-1	True	AATAAA	-40	NA	52434873	52397870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_52399280_52400143_52400222_52400640_52400771_52401878_52402009_52408283_52408454_52408882_52408959_52409494_52409608_52409904_52410031_52410927_52411047_52411233_52411361_52411452_52411589_52412698_52412827_52413816_52413971_52414066_52414183_52414405_52414502_52414611_52414678_52415500_52415614_52415740_52415815_52416930_52417022_52417557_52417731_52418473_52418626_52418993_52419141_52419613_52419767_52420468_52420640_52421384_52421478_52434541
transcript_17023.known	chr14	-	3329	1	FSM	ENSMUSG00000053754.15	ENSMUST00000199135.2	3329	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	488	False	NA	NA	False	NA	NA	NA	52495180	52491851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_52491900_52495200
transcript_17025.known	chr14	-	2025	11	FSM	ENSMUSG00000022160.19	ENSMUST00000022767.16	2025	11	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	19.5910693939866	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGGCTTTCCACTTAGTG	NA	False	NA	-16	True	AATAAA	-39	NA	52542585	52532297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_52532551_52533530_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52536096_52536273_52537157_52537563_52537640_52537859_52542344
transcript_17026.nic	chr14	-	1841	10	NIC	ENSMUSG00000022160.19	novel	2025	11	NA	NA	-8	0	intron_retention	FALSE	canonical	3	11	junction_7	51.3181795814656	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTCTGAAGTGAAATTAT	NA	False	NA	-32	True	AATAAA	-23	NA	52542593	52532313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_52532551_52533530_52533644_52533972_52534039_52534120_52534230_52534375_52534415_52534927_52535116_52535325_52535543_52537157_52537563_52537640_52537859_52542344
transcript_17028.known	chr14	-	2906	8	FSM	ENSMUSG00000022159.17	ENSMUST00000022765.14	2906	8	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_5	9.75202752335772	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTGTCATTTCTGAC	NA	False	NA	1	True	ATTAAA	-27	NA	52517002	52499215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_52501275_52502155_52502225_52503646_52503759_52506098_52506192_52506374_52506458_52512899_52512968_52516370_52516443_52516652
transcript_17029.known	chr14	-	1504	1	FSM	ENSMUSG00000022160.19	ENSMUST00000197394.2	1504	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	52542581	52541077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_52541100_52542600
transcript_17030.known	chr14	+	415	2	FSM	ENSMUSG00000095854.5	ENSMUST00000181038.3	415	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGCTCTCCAGGCACC	1860	False	NA	NA	False	NA	NA	NA	53093070	53093623	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_53093174_53093311
transcript_17031.known	chr14	-	1768	1	FSM	ENSMUSG00000115785.2	ENSMUST00000228343.2	1768	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTCTTTGGAGGTCTAGGA	NA	False	NA	NA	False	AATAAA	-34	NA	53100209	53098441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_53098400_53100200
transcript_17032.known	chr14	+	438	1	FSM	ENSMUSG00000094974.2	ENSMUST00000100614.6	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	NA	False	NA	NA	False	NA	NA	NA	53140249	53140687	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_53140200_53140700
transcript_17033.known	chr14	+	438	1	FSM	ENSMUSG00000096681.2	ENSMUST00000168472.3	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAAGGATGCTGGGTTAA	7934	False	NA	NA	False	NA	NA	NA	53451186	53451624	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_53451200_53451600
transcript_17034.known	chr14	+	411	2	FSM	ENSMUSG00000093966.3	ENSMUST00000103655.3	411	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGCTCCCAGCAAGGC	NA	False	NA	NA	False	NA	NA	NA	53836284	53836867	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_53836417_53836588
transcript_17039.known	chr14	-	878	3	FSM	ENSMUSG00000022174.9	ENSMUST00000022781.8	878	3	0	0	0	0	multi-exon	FALSE	canonical	3	1530	junction_1	8	1227	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGTTCCTTCATGTTTGTG	NA	False	NA	-11	True	ATTAAA	-24	NA	54491561	54472935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_54473171_54480155_54480326_54491088
transcript_17040.known	chr14	+	2508	7	FSM	ENSMUSG00000040997.15	ENSMUST00000180359.8	2508	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	134.648616777151	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATAGTATTAACTCCTGG	NA	False	NA	-78	True	TATAAA	-16	NA	54491644	54506532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_54491929_54499082_54499172_54500107_54500481_54500625_54500781_54502737_54502850_54504451_54504639_54505224
transcript_17042.known	chr14	+	2406	7	FSM	ENSMUSG00000040997.15	ENSMUST00000239403.2	2406	7	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_1	38.1200588783502	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACACTGTTTAATATTGAT	NA	False	NA	16	True	AATAAA	-23	NA	54496688	54506626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_54496777_54499082_54499172_54500107_54500481_54500625_54500781_54502737_54502850_54504451_54504639_54505224
transcript_17067.known	chr14	-	2126	11	FSM	ENSMUSG00000000958.11	ENSMUST00000226753.2	2126	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_10	53.6977653166312	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGAGTGGCTTTATTCT	NA	False	NA	-4	True	AATAAA	-17	NA	54655136	54606898	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_54607344_54607549_54607734_54610396_54610547_54611298_54611396_54611670_54611775_54612004_54612129_54615222_54615368_54616452_54616579_54645959_54646506_54654045_54654228_54655113
transcript_17071.nnic	chr14	+	1494	10	NNC	ENSMUSG00000000959.8	novel	2538	10	NA	NA	-58	3	at_least_one_novel_splicesite	TRUE	canonical	3	14	junction_3	170.425466131599	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCTGTCTTGTCTGGGCTT	NA	False	NA	24	True	AGTAAA	-1	NA	54598232	54606097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_54598375_54598778_54598926_54600738_54600877_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
transcript_17073.known	chr14	+	2538	10	FSM	ENSMUSG00000000959.8	ENSMUST00000000985.7	2538	10	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_4	29.1475598792348	781	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGTTCAGAGTTGAAGCT	NA	False	NA	NA	False	AATAAA	-21	NA	54598297	54607130	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_54598375_54598778_54598926_54600738_54600953_54604165_54604310_54604481_54604568_54604722_54604888_54605044_54605150_54605249_54605413_54605609_54605691_54605774
transcript_17089.known	chr14	+	1438	3	FSM	ENSMUSG00000000959.8	ENSMUST00000198107.2	1438	3	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_1	34.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAAAATGTTCCTTT	NA	False	NA	NA	False	NA	NA	NA	54598297	54601952	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_54598375_54598778_54598926_54600738
transcript_17090.known	chr14	+	1059	1	FSM	ENSMUSG00000000959.8	ENSMUST00000228567.2	1059	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATGAAAAAAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	54598290	54599349	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_54598300_54599300
transcript_17092.known	chr14	+	418	5	FSM	ENSMUSG00000010406.13	ENSMUST00000010550.12	418	5	0	0	0	0	multi-exon	FALSE	canonical	3	1056	junction_1	196.876230154887	889	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTCTCTGGCTTTCTTTTC	NA	False	NA	27	True	AATAAA	-28	NA	54664365	54667213	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_54664418_54664490_54664549_54664627_54664696_54666040_54666106_54667038
transcript_17096.nic	chr14	+	498	4	NIC	ENSMUSG00000010406.13	novel	418	5	NA	NA	-11	0	intron_retention	FALSE	canonical	3	1056	junction_1	226.233409459248	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCCAGACTCTCTCTGG	NA	False	NA	17	True	AATAAA	-18	NA	54664354	54667203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_54664418_54664490_54664696_54666040_54666106_54667038
transcript_17098.known	chr14	+	463	4	FSM	ENSMUSG00000010406.13	ENSMUST00000199195.3	463	4	0	0	0	0	multi-exon	FALSE	canonical	3	1331	junction_1	96.858430482615	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGACTCTCTCTGGCTT	NA	False	NA	20	True	AATAAA	-21	NA	54664386	54667206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_54664549_54664627_54664696_54666040_54666106_54667038
transcript_17099.known	chr14	+	429	3	FSM	ENSMUSG00000010406.13	ENSMUST00000199689.2	429	3	0	0	0	0	multi-exon	FALSE	canonical	3	1524	junction_2	11.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCCCAGACTCTCTCTGG	NA	False	NA	17	True	AATAAA	-18	NA	54664496	54667203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_54664696_54666040_54666106_54667038
transcript_17100.known	chr14	+	4228	7	FSM	ENSMUSG00000022175.10	ENSMUST00000022782.10	4228	7	0	0	0	0	multi-exon	TRUE	canonical	3	169	junction_1	20.8306664959782	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAAGGTTTCCTTTGTTGT	NA	False	NA	NA	False	AATATA	-18	NA	54701593	54708954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_54702069_54702360_54702406_54703030_54703167_54704916_54705108_54705220_54706239_54706492_54706623_54706721
transcript_17101.known	chr14	-	2691	17	FSM	ENSMUSG00000023110.13	ENSMUST00000023873.12	2691	17	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_14	59.4941895797396	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCCTGCTTCTTTCTGCCT	4695	False	NA	-11	True	AATAAA	-25	NA	54754982	54744643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_54745405_54746348_54746414_54746745_54746863_54747000_54747095_54747290_54747401_54748335_54748512_54748597_54748721_54748804_54748864_54748958_54749037_54749449_54749612_54750747_54750912_54752053_54752104_54752231_54752345_54752759_54752895_54753562_54753649_54753953_54754073_54754703
transcript_17107.known	chr14	-	1587	10	FSM	ENSMUSG00000022177.10	ENSMUST00000022784.9	1587	10	0	0	0	0	multi-exon	FALSE	canonical	3	401	junction_5	37.1423687391577	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTAGTCATTTTTCCT	NA	False	NA	-1	True	AATAAA	-20	NA	54791818	54779241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_54779715_54779839_54779909_54781235_54781367_54781661_54781808_54783182_54783280_54786322_54786458_54787125_54787258_54787350_54787494_54789593_54789668_54791631
transcript_17109.nic	chr14	-	1717	9	NIC	ENSMUSG00000022177.10	novel	1587	10	NA	NA	-5	0	intron_retention	FALSE	canonical	3	401	junction_4	39.3904731502428	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTAGTCATTTTTCCT	NA	False	NA	-1	True	AATAAA	-20	NA	54791823	54779241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_54779909_54781235_54781367_54781661_54781808_54783182_54783280_54786322_54786458_54787125_54787258_54787350_54787494_54789593_54789668_54791631
transcript_17110.known	chr14	-	3397	8	FSM	ENSMUSG00000022178.12	ENSMUST00000054487.10	3397	8	0	0	0	0	multi-exon	TRUE	canonical	3	297	junction_5	54.835933399886	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGAGTGTATTGTGGT	NA	False	NA	-6	True	AGTAAA	-18	NA	54815015	54804928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_54806514_54806932_54807002_54807701_54807754_54807833_54807965_54809057_54809121_54809222_54809291_54810848_54810951_54813688
transcript_17111.known	chr14	-	2670	7	FSM	ENSMUSG00000022179.6	ENSMUST00000022786.6	2670	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	4.10960933531265	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTGTTGGGCTTAGT	NA	False	NA	-1	True	NA	NA	NA	54843450	54821119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_54822164_54822435_54822549_54823108_54823213_54823392_54823455_54828578_54828897_54832570_54833409_54843259
transcript_17112.known	chr14	-	899	3	FSM	ENSMUSG00000022193.8	ENSMUST00000022803.6	899	3	0	0	0	0	multi-exon	FALSE	canonical	3	1854	junction_2	4.5	413	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTGGAGTCCACAGTTATT	8624	False	NA	-17	True	AATAAA	-18	NA	54855479	54851575	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_54851939_54853971_54854279_54855250
transcript_17114.known	chr14	-	4048	18	FSM	ENSMUSG00000022185.20	ENSMUST00000111484.9	4048	18	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_15	148.725217469731	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAGAAAACACTAGAGAGC	2630	False	NA	NA	False	NA	NA	NA	54924388	54880184	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54899624_54899741_54901043_54901263_54901828_54903092_54904529_54904619_54916697_54916810_54922467_54922534_54923925
transcript_17116.known	chr14	-	2494	13	FSM	ENSMUSG00000022185.20	ENSMUST00000150371.8	2494	13	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_12	131.761437412047	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATTTGAGTGCCTTTC	3757	False	NA	-6	True	AATAAA	-19	NA	54891139	54879623	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890670_54890736_54890991
transcript_17117.known	chr14	-	2373	13	FSM	ENSMUSG00000022185.20	ENSMUST00000148754.10	2373	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_12	140.751628172939	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGAGTGCCTTTCCTTGG	3738	False	NA	-1	True	AATAAA	-24	NA	54891158	54879618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890670_54890736_54891136
transcript_17119.known	chr14	-	2381	12	FSM	ENSMUSG00000022185.20	ENSMUST00000141453.8	2381	12	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_11	154.04743285835	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTGCCTTTCCTTGGG	3772	False	NA	0	True	AATAAA	-25	NA	54891124	54879617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884025_54884159_54884291_54885544_54885588_54889173_54889316_54890991
transcript_17121.known	chr14	-	2369	12	FSM	ENSMUSG00000022185.20	ENSMUST00000126166.8	2369	12	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_11	105.5899600787	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTGCCTTTCCTTGGG	3823	False	NA	0	True	AATAAA	-25	NA	54891073	54879617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_54880506_54881180_54881282_54881397_54881723_54881904_54882013_54882140_54882249_54882667_54882814_54883061_54883201_54883907_54884061_54884159_54884294_54885544_54885588_54889173_54889316_54890991
transcript_17127.known	chr14	+	811	3	FSM	ENSMUSG00000040822.8	ENSMUST00000228027.2	811	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	179.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTCGAGGTTGGGCTGA	NA	False	NA	NA	False	NA	NA	NA	54923693	54927570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_54924111_54924493_54924578_54927260
transcript_17130.known	chr14	+	1843	2	FSM	ENSMUSG00000040822.8	ENSMUST00000038539.8	1843	2	0	0	0	0	multi-exon	FALSE	canonical	3	385	junction_1	0	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTACTGGTGATTCACAT	NA	False	NA	NA	False	AATAAA	-26	NA	54923672	54928198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_54924578_54927260
transcript_17131.nnic	chr14	+	1374	16	NNC	ENSMUSG00000112858.3	novel	1233	16	NA	NA	-35	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_5	7.46964226422896	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTTGTATGAGGGTAT	NA	False	NA	14	True	ATTAAA	-18	NA	55051562	55091565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_55051743_55053942_55054044_55056993_55057047_55057594_55057670_55060459_55060585_55075569_55075686_55076681_55076743_55077723_55077753_55079339_55079387_55079595_55079639_55079805_55079867_55080243_55080293_55086123_55086164_55086751_55086847_55087992_55088055_55091328
transcript_17133.known	chr14	+	1201	15	FSM	ENSMUSG00000112858.3	ENSMUST00000218311.2	1201	15	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4.37525509460387	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAAAACTGTGTGTGT	NA	False	NA	1	True	ATTAAA	-5	NA	55051597	55091552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55051743_55053942_55054044_55056993_55057047_55057594_55057670_55075569_55075686_55076681_55076743_55077723_55077753_55079339_55079387_55079595_55079639_55079805_55079867_55080243_55080293_55086123_55086164_55086751_55086847_55087992_55088055_55091328
transcript_17140.known	chr14	+	1030	7	FSM	ENSMUSG00000022194.16	ENSMUST00000022808.14	1030	7	0	0	0	0	multi-exon	FALSE	canonical	3	2071	junction_6	205.041797906887	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGATATA	NA	False	NA	34	True	NA	NA	NA	55131604	55135626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55131952_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
transcript_17142.known	chr14	+	700	7	FSM	ENSMUSG00000022194.16	ENSMUST00000172557.2	700	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	922.719651657834	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGAAGATGACCTTGAT	NA	False	NA	-1	True	NA	NA	NA	55132074	55135591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55132127_55132304_55132420_55133085_55133154_55133273_55133381_55134408_55134497_55134577_55134730_55135473
transcript_17144.known	chr14	+	3813	3	FSM	ENSMUSG00000089682.11	ENSMUST00000133397.4	3813	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCTCTATAAATATAAATATA	NA	False	NA	NA	False	CATAAA	-43	NA	55120960	55125552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55120964_55121253_55121342_55121830
transcript_17145.known	chr14	+	645	3	FSM	ENSMUSG00000089682.11	ENSMUST00000227108.2	645	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	10	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTGGGACAAGTGCAGGA	NA	False	NA	NA	False	AAGAAA	-9	NA	55120963	55122189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55121162_55121253_55121342_55121830
transcript_17150.known	chr14	+	1200	11	FSM	ENSMUSG00000022204.10	ENSMUST00000022815.10	1200	11	0	0	0	0	multi-exon	FALSE	canonical	3	1001	junction_1	176.552230232303	1146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACATTTTTTGCCATACAT	NA	False	NA	18	True	AATAAA	-23	NA	55252910	55261594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55253046_55253625_55253686_55254522_55254595_55258510_55258649_55258850_55258936_55259012_55259066_55259277_55259402_55259494_55259664_55260506_55260664_55260792_55260851_55261445
transcript_17163.known	chr14	-	2673	22	FSM	ENSMUSG00000040701.17	ENSMUST00000036041.15	2673	22	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_4	12.8308372870802	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTAGCTGTGAAGTGGC	NA	False	NA	-22	True	AATAAA	-16	NA	55344050	55336306	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338633_55338851_55338980_55339054_55339145_55339767_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342038_55342116_55342287_55342385_55342484_55342627_55342762_55342888_55343381_55343587_55343964
transcript_17168.known	chr14	-	3031	20	FSM	ENSMUSG00000040701.17	ENSMUST00000151314.9	3031	20	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_15	29.9717318342013	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGAGTTTTGATGGCTGC	NA	False	NA	NA	False	AATAAA	-13	NA	55343991	55336031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55336619_55336696_55336796_55337158_55337323_55337875_55338027_55338107_55338235_55338527_55338980_55339054_55339145_55339767_55339891_55339964_55340020_55340098_55340240_55340393_55340508_55340659_55340716_55340865_55340965_55341268_55341350_55341819_55341916_55342287_55342385_55342484_55342627_55342762_55342888_55343381_55343587_55343964
transcript_17169.known	chr14	+	2830	2	FSM	ENSMUSG00000045691.15	ENSMUST00000050575.9	2830	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGGTCTTTATTTCCGTT	NA	False	NA	7	True	AATAAA	-18	NA	55332240	55336443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55333464_55334836
transcript_17170.known	chr14	+	1392	8	FSM	ENSMUSG00000022210.8	ENSMUST00000022821.8	1392	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	11.5987332172483	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGCGTGTTTATTTCTC	NA	False	NA	11	True	AATAAA	-26	NA	55716214	55727797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724621_55724716_55724769_55725040_55725176_55725616_55725673_55727275
transcript_17171.nic	chr14	+	1496	7	NIC	ENSMUSG00000022210.8	novel	1392	8	NA	NA	-8	0	intron_retention	FALSE	canonical	3	56	junction_3	11.6285090283416	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGCGTGTTTATTTCTC	NA	False	NA	11	True	AATAAA	-26	NA	55716206	55727797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724769_55725040_55725176_55725616_55725673_55727275
transcript_17174.known	chr14	+	828	5	FSM	ENSMUSG00000022210.8	ENSMUST00000226168.2	828	5	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	5.40254569624358	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTAGTCTCTGGGTCCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	55716331	55725034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549_55724621_55724716
transcript_17176.nic	chr14	+	1043	4	ISM	ENSMUSG00000022210.8	ENSMUST00000226168.2	828	5	-125	6	-8	0	intron_retention	FALSE	canonical	3	56	junction_3	6.12825877028341	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCCTAGTCTCTGGG	NA	False	NA	NA	False	AATAAA	-15	NA	55716206	55725028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_+_55716491_55717482_55717661_55723573_55723676_55724549
transcript_17181.known	chr14	+	4625	10	FSM	ENSMUSG00000040618.8	ENSMUST00000226519.2	4625	10	0	0	0	0	multi-exon	FALSE	canonical	3	1356	junction_5	122.962304772893	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGAAGAAACCCTTCA	8891	False	NA	NA	False	NA	NA	NA	55777722	55788699	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
transcript_17188.known	chr14	+	2417	9	FSM	ENSMUSG00000040618.8	ENSMUST00000226770.2	2417	9	0	0	0	0	multi-exon	FALSE	canonical	3	1491	junction_4	96.0676031500734	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACAGGACTCCCCATGCT	9031	False	NA	27	True	ATTAAA	-24	NA	55777862	55786329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761
transcript_172.known	SIRV6	+	454	3	FSM	SIRV6A	SIRV611	454	3	0	0	0	0	multi-exon	FALSE	canonical	3	2656	junction_1	12443	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGGTGTTTATAGTTTA	NA	False	NA	NA	False	NA	NA	NA	1303	1950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6_+_1382_1468_1535_1640
transcript_17200.known	chr14	+	2784	11	FSM	ENSMUSG00000040618.8	ENSMUST00000226352.2	2784	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_10	479.473419492676	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGGCAGTTGGAAGAATGG	9014	False	NA	4	True	NA	NA	NA	55777845	55787281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55777971_55779862_55780109_55781045_55781231_55781316_55781521_55781851_55782040_55782341_55782505_55782663_55782883_55785153_55785292_55785496_55785593_55785761_55786112_55786411
transcript_17202.nic	chr14	+	2566	15	NIC	ENSMUSG00000022214.16	novel	2660	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	31.9189023390625	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	13	True	AATAAA	-18	NA	55797939	55807521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_55798085_55798666_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_17203.known	chr14	+	2624	15	FSM	ENSMUSG00000022214.16	ENSMUST00000152681.8	2624	15	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	36.5692661191033	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTCTGTGTCTGTGTCA	NA	False	NA	10	True	AATAAA	-15	NA	55797990	55807518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55798085_55798531_55798877_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_17205.nic	chr14	+	2700	15	NIC	ENSMUSG00000022214.16	novel	2624	15	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	27.5910366989435	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	13	True	AATAAA	-18	NA	55797940	55807521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_55798085_55798531_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_17209.known	chr14	+	2601	15	FSM	ENSMUSG00000022214.16	ENSMUST00000072530.11	2601	15	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	34.3960278912243	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTCTGTGTCTGTGTCAC	NA	False	NA	11	True	AATAAA	-16	NA	55798385	55807519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55798433_55798531_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_17210.known	chr14	+	971	2	FSM	ENSMUSG00000022215.7	ENSMUST00000022826.7	971	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCCTCCGATTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	55813073	55814411	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55813405_55813771
transcript_17212.known	chr14	+	2538	15	FSM	ENSMUSG00000022214.16	ENSMUST00000117236.8	2538	15	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_1	36.2303430166213	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGTCTGTGTCACTTT	NA	False	NA	14	True	AATAAA	-19	NA	55797462	55807522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55797579_55798666_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_17213.known	chr14	+	2660	14	FSM	ENSMUSG00000022214.16	ENSMUST00000128490.9	2660	14	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	16.6800735031656	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCTGTGTCACTT	NA	False	NA	13	True	AATAAA	-18	NA	55798427	55807521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55798900_55800348_55800477_55800828_55800957_55801176_55801242_55801509_55801611_55801827_55801975_55802190_55802246_55802554_55802624_55802940_55802999_55803093_55803280_55804320_55804475_55804704_55804858_55806479_55806587_55806684
transcript_17214.known	chr14	+	882	12	FSM	ENSMUSG00000022216.18	ENSMUST00000174484.8	882	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	92.4488690489492	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCCCGTGGAGAAACCAAG	NA	False	NA	NA	False	NA	NA	NA	55815579	55818803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55815706_55815990_55816071_55817051_55817085_55817227_55817291_55817387_55817499_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
transcript_17218.known	chr14	+	1112	11	FSM	ENSMUSG00000022216.18	ENSMUST00000174259.8	1112	11	0	0	0	0	multi-exon	FALSE	canonical	1	117	junction_4	54.1775783881118	493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCATGTCTTTATTGTATG	NA	False	NA	14	True	AATAAA	-18	NA	55815816	55818985	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55816071_55817051_55817085_55817227_55817291_55817387_55817499_55817570_55817617_55817786_55817885_55818051_55818121_55818200_55818269_55818374_55818430_55818508_55818596_55818757
transcript_17227.known	chr14	-	855	5	FSM	ENSMUSG00000022217.15	ENSMUST00000022828.9	855	5	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	3.69966214673719	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTATGTATTTATTGTGT	NA	False	NA	-5	True	AATAAA	-17	NA	55822759	55818978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55819201_55819337_55819433_55819512_55819583_55822135_55822213_55822368
transcript_17231.known	chr14	-	962	11	FSM	ENSMUSG00000079197.11	ENSMUST00000161807.8	962	11	0	0	0	0	multi-exon	FALSE	canonical	3	915	junction_9	61.4455856835949	755	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACCTGTGTTGTTCATTGA	NA	False	NA	NA	False	AATAAA	-21	NA	55828544	55824897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55825023_55825110_55825198_55825496_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827163_55827489_55827553_55827951_55827985_55828298
transcript_17232.known	chr14	-	795	11	FSM	ENSMUSG00000079197.11	ENSMUST00000111378.10	795	11	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_10	298.855818079555	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTACCTGTGTTGTTCATTG	NA	False	NA	NA	False	AATAAA	-20	NA	55828558	55824898	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55825023_55825110_55825198_55825496_55825552_55825689_55825758_55825900_55825970_55826757_55826856_55826937_55826969_55827075_55827163_55827489_55827553_55827951_55827985_55828478
transcript_17238.known	chr14	+	3485	21	FSM	ENSMUSG00000047098.19	ENSMUST00000019443.15	3485	21	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_6	30.6031044176894	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCCTCAGCATCCCGGGG	4174	False	NA	38	True	AATAAA	-41	NA	55829164	55841150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55829530_55829625_55829773_55829917_55830074_55830289_55830350_55830462_55830533_55831751_55831930_55832379_55832759_55832926_55833218_55833463_55833713_55833798_55833985_55834108_55834316_55836094_55836269_55836360_55836460_55836552_55836643_55838505_55838621_55838735_55838855_55839098_55839213_55839337_55839396_55840059_55840157_55840712_55840882_55840988
transcript_17241.known	chr14	+	2459	9	FSM	ENSMUSG00000002325.16	ENSMUST00000130697.8	2459	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	14.5086181285469	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTCATGTGGTGTCTA	NA	False	NA	9	True	NA	NA	NA	55841441	55847487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55841701_55842508_55842690_55843177_55843362_55843549_55843624_55843774_55843896_55843993_55844066_55844970_55845313_55846141_55846258_55846377
transcript_17242.known	chr14	+	2343	9	FSM	ENSMUSG00000002325.16	ENSMUST00000138037.2	2343	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	18.7945304543636	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTCATGTGGTGTCTA	NA	False	NA	9	True	NA	NA	NA	55842035	55847487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55842179_55842508_55842690_55843177_55843362_55843549_55843624_55843774_55843896_55843993_55844066_55844970_55845313_55846141_55846258_55846377
transcript_17243.known	chr14	+	2184	20	FSM	ENSMUSG00000002324.9	ENSMUST00000002395.8	2184	20	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_6	6.49738920505725	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCCTCTTTTTTTTTTT	1328	False	NA	9	True	ATTAAA	-21	NA	55855493	55862852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55855811_55856002_55856116_55856198_55856268_55856354_55856498_55856577_55856654_55857036_55857158_55858691_55858777_55859671_55859752_55859883_55860020_55860101_55860175_55860250_55860343_55860620_55860671_55860953_55861092_55861377_55861445_55861532_55861700_55861805_55861855_55862179_55862244_55862341_55862459_55862529_55862637_55862732
transcript_17246.known	chr14	-	3846	30	FSM	ENSMUSG00000002319.17	ENSMUST00000047131.16	3846	30	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_28	76.4571487859417	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCCAGTGAGGCAGGAT	9745	False	NA	NA	False	AAAAAG	-5	NA	55873141	55862856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55863499_55863610_55863681_55864796_55864902_55864991_55865125_55865241_55865451_55865562_55865689_55866048_55866097_55866250_55866445_55866523_55866633_55866716_55866775_55866850_55866929_55867205_55867325_55867434_55867547_55867751_55867873_55868054_55868169_55868273_55868388_55868598_55868729_55868888_55868998_55869489_55869600_55869756_55869811_55870417_55870583_55870790_55870875_55870961_55871064_55871168_55871235_55871471_55871652_55871736_55871867_55872461_55872504_55872588_55872669_55872819_55872907_55872986
transcript_1725.known	chr1	+	1216	5	FSM	ENSMUSG00000026238.15	ENSMUST00000045897.15	1216	5	0	0	0	0	multi-exon	FALSE	canonical	3	19621	junction_2	1755.19477195552	12369	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTTTCTGTGTGTA	NA	False	NA	57	True	NA	NA	NA	86454447	86458434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_86454673_86456894_86456967_86457177_86457275_86457452_86457527_86457686
transcript_17252.known	chr14	-	2164	6	FSM	ENSMUSG00000002320.16	ENSMUST00000120041.8	2164	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	125.802384715076	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	5295	False	NA	51	True	AATAAA	-19	NA	55880708	55873421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880636
transcript_17254.known	chr14	-	2517	6	FSM	ENSMUSG00000002320.16	ENSMUST00000122358.8	2517	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_5	133.851260733696	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	4740	False	NA	51	True	AATAAA	-19	NA	55881263	55873421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050_55880413_55880838
transcript_17258.known	chr14	-	2382	5	FSM	ENSMUSG00000002320.16	ENSMUST00000002391.15	2382	5	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_2	41.5060236592232	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATATTTGAACTTTTTA	5206	False	NA	-44	True	ATTAAA	-22	NA	55880797	55873516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55874070_55875315_55875590_55877841_55878028_55878423_55879046_55880050
transcript_17261.nnic	chr14	-	2371	5	NNC	ENSMUSG00000002320.16	novel	2164	6	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	165.610235190945	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCGTTGGAAGTTTTG	5209	False	NA	51	True	AATAAA	-19	NA	55880794	55873421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_55874070_55875479_55875651_55877841_55878028_55878423_55879046_55880050
transcript_17265.known	chr14	-	2271	2	FSM	ENSMUSG00000002320.16	ENSMUST00000127473.2	2271	2	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATAGTAAAAATAGCG	5175	False	NA	NA	False	NA	NA	NA	55880828	55877552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55879046_55880050
transcript_17266.known	chr14	-	1733	6	FSM	ENSMUSG00000002329.8	ENSMUST00000002400.7	1733	6	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_4	50.5750926840476	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTAAGCTGTATCTG	2285	False	NA	-8	True	AATAAA	-29	NA	55897965	55895335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897556_55897624_55897686_55897794
transcript_17269.known	chr14	-	1730	5	FSM	ENSMUSG00000002329.8	ENSMUST00000226659.2	1730	5	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_3	25.3673017879316	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGGAAAGACAATTTTC	2342	False	NA	-23	True	AATAAA	-14	NA	55897908	55895350	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55896532_55896656_55896743_55896826_55896935_55897444_55897686_55897794
transcript_1727.known	chr1	-	1306	5	FSM	ENSMUSG00000026239.15	ENSMUST00000143674.8	1306	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	145.167145043222	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGCATGCCGATGCTTCC	NA	False	NA	-11	True	ATTAAA	-15	NA	86510351	86470743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_86471306_86473423_86473530_86474378_86474505_86475157_86475340_86510021
transcript_17271.known	chr14	+	1993	10	FSM	ENSMUSG00000002326.7	ENSMUST00000002397.7	1993	10	0	0	0	0	multi-exon	TRUE	canonical	3	97	junction_1	15.6828127988557	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCAAGTCTGGACTTCCT	NA	False	NA	NA	False	NA	NA	NA	55909691	55916657	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55909842_55910162_55910259_55910406_55910527_55912783_55912868_55913015_55913190_55914211_55914294_55914384_55914492_55914662_55914706_55915327_55915488_55915680
transcript_17277.known	chr14	-	2956	9	FSM	ENSMUSG00000007589.10	ENSMUST00000007733.8	2956	9	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_6	40.8281459290034	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAGAAGTTGAAAAA	NA	False	NA	NA	False	NA	NA	NA	55919277	55915322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55916867_55916970_55917063_55917322_55917388_55917471_55917914_55918067_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
transcript_1728.known	chr1	-	1159	5	FSM	ENSMUSG00000026239.15	ENSMUST00000027444.15	1159	5	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	25.5391855782443	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTCTGGACTGTGACTCT	NA	False	NA	17	True	ATTAAA	-43	NA	86510269	86470715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_86471306_86473423_86473530_86474378_86474505_86475250_86475340_86510021
transcript_17284.known	chr14	-	3130	8	FSM	ENSMUSG00000007589.10	ENSMUST00000228264.2	3130	8	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_5	42.7532073030068	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAAAACAGCTTGTGTG	NA	False	NA	NA	False	TATAAA	-8	NA	55919243	55915268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55916867_55916970_55917063_55917322_55917388_55917471_55918165_55918251_55918360_55918456_55918547_55918681_55918769_55918846
transcript_17294.known	chr14	-	824	4	FSM	ENSMUSG00000010376.16	ENSMUST00000010520.10	824	4	0	0	0	0	multi-exon	FALSE	canonical	3	1795	junction_3	42.0502345085283	1740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGACTCTTTCTTCTTGA	NA	False	NA	-11	True	AATAAA	-15	NA	55909581	55899719	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55900083_55900871_55900955_55901268_55901317_55909251
transcript_17295.known	chr14	-	516	4	FSM	ENSMUSG00000010376.16	ENSMUST00000228414.2	516	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	873.770501269578	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGGTGCAGTGTTCCTG	NA	False	NA	-134	True	NA	NA	NA	55909334	55899842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55900083_55900871_55900955_55901268_55901379_55909251
transcript_17297.known	chr14	+	1658	3	FSM	ENSMUSG00000002326.7	ENSMUST00000226735.2	1658	3	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	16.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGTGT	NA	False	NA	NA	False	AATATA	-41	NA	55909397	55911524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55909842_55910162_55910259_55910406
transcript_1730.known	chr1	-	879	4	FSM	ENSMUSG00000026239.15	ENSMUST00000146220.2	879	4	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_2	26.1321428300262	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTTGGGACAAGATAGAGT	NA	False	NA	NA	False	AATAAA	-39	NA	86510269	86473113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_86473530_86474378_86474505_86475250_86475340_86510021
transcript_17300.known	chr14	-	2852	15	FSM	ENSMUSG00000022218.17	ENSMUST00000168729.8	2852	15	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_14	53.0521499304684	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAGGCCAAGAAGTATGGA	398	False	NA	2	True	AATAAA	-25	NA	55950949	55937465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950744
transcript_17301.known	chr14	-	2730	15	FSM	ENSMUSG00000022218.17	ENSMUST00000178034.9	2730	15	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_14	38.2803834241775	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGCTGTTTAGTAGTCCT	396	False	NA	-23	True	AATAAA	-22	NA	55950951	55937490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55937886_55941760_55941898_55942264_55942426_55942914_55943197_55943297_55943452_55943896_55943986_55946110_55946215_55946339_55946479_55946850_55947026_55947378_55947487_55947924_55948044_55948395_55948645_55949557_55949747_55949890_55950212_55950843
transcript_17302.known	chr14	-	2882	17	FSM	ENSMUSG00000040472.16	ENSMUST00000227061.2	2882	17	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_16	117.751443064406	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTGACCTGCCCAGGG	NA	False	NA	NA	False	ATTAAA	-18	NA	55959659	55952872	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
transcript_17303.known	chr14	-	1886	17	FSM	ENSMUSG00000040472.16	ENSMUST00000163889.3	1886	17	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_16	115.082697847027	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGCCAAGCTACCATTA	NA	False	NA	-19	True	AATAAA	-19	NA	55959720	55953781	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956600_55956696_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959657
transcript_17309.known	chr14	-	2492	16	FSM	ENSMUSG00000040472.16	ENSMUST00000228826.2	2492	16	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_15	120.970777003741	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGAAAAGAAAAGCTTTCT	NA	False	NA	NA	False	NA	NA	NA	55959633	55953333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55953996_55954624_55954713_55954960_55955075_55955902_55956020_55956119_55956209_55956320_55956410_55956547_55956803_55956886_55956989_55957080_55957164_55957252_55957337_55957760_55957965_55958232_55958421_55958592_55958718_55959051_55959163_55959300_55959358_55959509
transcript_17316.known	chr14	-	1477	9	FSM	ENSMUSG00000002332.17	ENSMUST00000002403.10	1477	9	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	15.4833580014156	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGAGTTCTCATTCTGT	NA	False	NA	0	True	AATAAA	-20	NA	55983147	55976476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55976878_55977008_55977090_55977392_55977463_55978183_55978331_55978639_55978773_55980910_55980991_55981114_55981259_55982374_55982546_55982897
transcript_17319.known	chr14	+	3694	10	FSM	ENSMUSG00000019297.10	ENSMUST00000019441.9	3694	10	0	0	0	0	multi-exon	FALSE	canonical	3	658	junction_1	26.1788718880958	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGTTGCAGTTCTTTCTT	NA	False	NA	NA	False	NA	NA	NA	55983149	55992957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_55983478_55983617_55984068_55986788_55986900_55987448_55987591_55988509_55988703_55989514_55989656_55989993_55990120_55990268_55990506_55990716_55990823_55991097
transcript_1732.known	chr1	+	5383	8	FSM	ENSMUSG00000026240.13	ENSMUST00000121534.8	5383	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	127.599500990643	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACATTAAAAAAAAAAAAAGA	6007	False	NA	NA	False	ACTAAA	-5	NA	86510625	86537097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_86510819_86514737_86514958_86516885_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779
transcript_17321.known	chr14	-	1212	5	FSM	ENSMUSG00000022219.11	ENSMUST00000001497.9	1212	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.06155281280883	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGTCTTTACCAGTATG	NA	False	NA	NA	False	AATAAA	-25	NA	55995915	55991506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_55992029_55992167_55992359_55992581_55992729_55995298_55995444_55995708
transcript_17323.known	chr14	-	1892	10	FSM	ENSMUSG00000022221.15	ENSMUST00000022830.14	1892	10	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_2	8.73194786861711	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTCTGAGGTGTCAATC	NA	False	NA	-1	True	AATAAA	-20	NA	56026322	56022451	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_56022809_56023318_56023377_56023482_56023816_56024039_56024108_56024213_56024382_56024570_56024618_56024738_56024897_56025280_56025591_56025694_56025839_56026073
transcript_17324.known	chr14	-	1865	10	FSM	ENSMUSG00000022221.15	ENSMUST00000178399.3	1865	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	41.6620738209433	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGTCTGAGGTGTCAA	NA	False	NA	-3	True	AATAAA	-18	NA	56026314	56022453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_56022809_56023318_56023377_56023482_56023816_56024039_56024108_56024213_56024382_56024570_56024618_56024738_56024897_56025280_56025591_56025694_56025822_56026073
transcript_17325.known	chr14	-	792	6	FSM	ENSMUSG00000022223.10	ENSMUST00000227163.2	792	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	71.6753793153549	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGGCTCCAGCATCTACAA	NA	False	NA	NA	False	NA	NA	NA	56137641	56135291	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103_56137187_56137270_56137378_56137483
transcript_17326.known	chr14	-	1255	6	FSM	ENSMUSG00000022223.10	ENSMUST00000111325.5	1255	6	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_5	35.4547599061113	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGGCTTCCGCTGTCTC	NA	False	NA	-6	True	AATAAA	-20	NA	56137715	56134739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_56135470_56135699_56135844_56136640_56136763_56137103_56137187_56137270_56137378_56137646
transcript_17328.known	chr14	-	1023	6	FSM	ENSMUSG00000022223.10	ENSMUST00000227032.2	1023	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	63.0441115410472	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGAGAAGTGGGTCAGGT	NA	False	NA	NA	False	NA	NA	NA	56137668	56135015	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_56135470_56135699_56135935_56136640_56136763_56137103_56137187_56137270_56137378_56137646
transcript_17336.known	chr14	-	385	4	FSM	ENSMUSG00000022223.10	ENSMUST00000228151.2	385	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_3	32.0312347560939	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAAGCAGTTGAGGCACT	NA	False	NA	NA	False	NA	NA	NA	56137669	56136590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_56136763_56137103_56137187_56137270_56137378_56137646
transcript_1734.known	chr1	+	2231	7	FSM	ENSMUSG00000026240.13	ENSMUST00000027446.11	2231	7	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_3	30.6743649757687	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	AAAAAG	-12	NA	86514821	86534222	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_86514958_86516885_86517064_86520012_86520089_86524472_86524562_86526724_86526928_86528804_86528911_86532779
transcript_17340.nnic	chr14	+	3545	26	NNC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	56	1	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_25	108.5905631259	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTATTGGTTTCCTTTTTTT	NA	False	NA	9	True	ATTAAA	-17	NA	56640093	56726893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724513_56726767
transcript_17341.nic	chr14	+	3566	26	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	56	0	combination_of_known_junctions	FALSE	canonical	3	349	junction_12	57.9852946875326	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	8	True	ATTAAA	-16	NA	56640093	56726892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
transcript_17344.nnic	chr14	+	3454	25	NIC	ENSMUSG00000000365.10	novel	5264	37	NA	NA	56	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	115.170043365837	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATTGGTTTCCTTTTTT	NA	False	NA	8	True	ATTAAA	-16	NA	56640093	56726892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_56640282_56643033_56643129_56658531_56658624_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987_56679078_56697422_56697582_56699337_56699528_56700480_56700650_56703083_56703275_56705121_56705264_56708747_56708902_56712854_56712971_56715045_56715164_56718148_56718267_56719423_56719652_56720530_56720682_56720820_56720940_56722610_56722702_56724418_56724535_56726767
transcript_1735.known	chr1	+	3154	22	FSM	ENSMUSG00000053333.16	ENSMUST00000168237.8	3154	22	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_6	26.8303649010897	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTGTGTAGATGCCATG	NA	False	NA	15	True	AATAAA	-16	NA	86631540	86977817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_86631594_86672402_86672551_86673062_86673221_86681948_86682003_86688009_86688112_86719137_86719180_86748943_86749173_86782081_86782183_86784848_86785097_86806124_86806299_86858475_86858556_86887464_86887578_86901121_86901230_86917813_86918048_86948759_86948840_86971738_86971923_86972551_86972639_86974758_86974907_86975169_86975301_86975409_86975515_86976554_86976657_86977344
transcript_17350.known	chr14	+	1609	11	FSM	ENSMUSG00000000365.10	ENSMUST00000225361.2	1609	11	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_4	33.16700167335	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCCTCCTGCCTCTTGCTT	NA	False	NA	NA	False	AATAAA	-15	NA	56640156	56679370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060_56676366_56678987
transcript_17351.nic	chr14	+	1326	10	ISM	ENSMUSG00000000365.10	ENSMUST00000225361.2	1609	11	-63	2968	56	-2968	5prime_fragment	TRUE	canonical	3	453	junction_4	32.6602412425979	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAATGTTCATGTGCTTAG	NA	False	NA	NA	False	AATAAA	-24	NA	56640093	56676402	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_+_56640282_56643033_56643129_56658531_56658624_56661914_56662027_56663056_56663129_56665344_56665446_56668934_56669107_56671777_56671855_56672053_56672129_56676060
transcript_17358.known	chr14	+	2939	14	FSM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	0	0	0	0	multi-exon	FALSE	canonical	3	627	junction_4	88.7108193370776	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTACTAGTCGTTGTGA	1778	False	NA	32	True	ATTAAA	-18	NA	56905704	56934887	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_56906022_56909861_56910018_56911347_56912197_56913978_56914076_56916020_56916276_56922414_56922541_56922618_56922708_56925821_56925963_56926485_56926573_56928363_56928519_56930880_56931036_56933077_56933206_56934115_56934200_56934587
transcript_17359.nnic	chr14	+	3001	14	NNC	ENSMUSG00000079184.11	novel	2939	14	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	3	111	junction_3	214.971059012644	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTACTAGTCGTTGTGA	1752	False	NA	32	True	ATTAAA	-18	NA	56905678	56934887	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_56906022_56909861_56910018_56911347_56912233_56913978_56914076_56916020_56916276_56922414_56922541_56922618_56922708_56925821_56925963_56926485_56926573_56928363_56928519_56930880_56931036_56933077_56933206_56934115_56934200_56934587
transcript_1736.known	chr1	+	3085	21	FSM	ENSMUSG00000053333.16	ENSMUST00000065694.8	3085	21	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_5	12.4998999996	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTGTCTGTGTAGATGCC	NA	False	NA	12	True	AATAAA	-13	NA	86631564	86977814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_86631594_86672402_86672551_86673062_86673221_86681948_86682003_86688009_86688112_86748943_86749173_86782081_86782183_86784848_86785097_86806124_86806299_86858475_86858556_86887464_86887578_86901121_86901230_86917813_86918048_86948759_86948840_86971738_86971923_86972551_86972639_86974758_86974907_86975169_86975301_86975409_86975515_86976554_86976657_86977344
transcript_17365.nic	chr14	+	1604	5	ISM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	-26	18708	-26	4745	5prime_fragment	FALSE	canonical	3	627	junction_4	106.552803811068	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAATACTCGAGATGAGACT	1752	False	NA	NA	False	AAGAAA	-4	NA	56905678	56916179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_+_56906022_56909861_56910018_56911347_56912197_56913978_56914076_56916020
transcript_17367.nic	chr14	+	586	3	ISM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	-26	23453	-26	0	5prime_fragment	FALSE	canonical	3	870	junction_1	10.5	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAGAAAAAAATAAAGTG	1752	False	NA	-37	True	NA	NA	NA	56905678	56911434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_+_56906022_56909861_56910018_56911347
transcript_17368.nic	chr14	+	895	3	ISM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	-26	23144	-26	309	5prime_fragment	FALSE	canonical	3	870	junction_1	10.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGATATATAGAATCTCC	1752	False	NA	NA	False	ATTAAA	-40	NA	56905678	56911743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_+_56906022_56909861_56910018_56911347
transcript_17369.nic	chr14	+	1349	3	ISM	ENSMUSG00000079184.11	ENSMUST00000116468.2	2939	14	-26	22690	-26	763	5prime_fragment	FALSE	canonical	3	870	junction_1	10.5	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTTGGTGGAGAACTTG	1752	False	NA	7	True	NA	NA	NA	56905678	56912197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_+_56906022_56909861_56910018_56911347
transcript_1737.known	chr1	+	1173	4	FSM	ENSMUSG00000053333.16	ENSMUST00000188121.7	1173	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	49.2769948578667	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACTTTTCTTTATAACC	NA	False	NA	NA	False	AATAAA	-15	NA	86631529	86676053	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_86631594_86672402_86672551_86673062_86673221_86675250
transcript_17370.known	chr14	-	4114	9	FSM	ENSMUSG00000021938.13	ENSMUST00000022507.13	4114	9	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_8	29.8556422640679	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTGTTTTATTGGAAT	NA	False	NA	NA	False	AATAAA	-15	NA	57015773	56958166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_56960738_56962762_56962933_56965976_56966035_56986291_56986401_56996086_56996172_56999290_56999488_57001605_57001702_57009161_57009464_57015247
transcript_17373.known	chr14	-	5351	8	FSM	ENSMUSG00000040123.18	ENSMUST00000111285.9	5351	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_6	24.4798959581623	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTCTTTGGTGAAAATGA	8821	False	NA	-13	True	AATAAA	-28	NA	57049173	57028044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57048196_57048317_57049048
transcript_17376.nic	chr14	-	2926	7	NIC	ENSMUSG00000040123.18	novel	5290	8	NA	NA	-30	405	combination_of_known_junctions	FALSE	canonical	3	42	junction_6	15.7630016882008	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATTTTTGTTTTCTTGTG	8791	False	NA	1	True	NA	NA	NA	57049203	57030379	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
transcript_17377.known	chr14	-	2455	7	FSM	ENSMUSG00000040123.18	ENSMUST00000225699.2	2455	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	29.1547594742265	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACCAAAAAGAAGGAAA	8840	False	NA	NA	False	NA	NA	NA	57049154	57030784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_57031958_57034060_57034268_57035141_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
transcript_17378.nic	chr14	-	2521	7	NIC	ENSMUSG00000040123.18	novel	2455	7	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_6	15.7630016882008	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACCAAAAAGAAGGAAA	8791	False	NA	NA	False	NA	NA	NA	57049203	57030784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_57031958_57034060_57034268_57035124_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
transcript_1738.known	chr1	-	891	1	FSM	ENSMUSG00000084106.5	ENSMUST00000120149.2	891	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	437	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGTTAACCTAATTAAACA	NA	False	NA	NA	False	NA	NA	NA	86837405	86836514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_86836500_86837400
transcript_17380.nic	chr14	-	1645	5	ISM	ENSMUSG00000040123.18	ENSMUST00000225699.2	2455	7	-49	3836	-30	22	5prime_fragment	FALSE	canonical	3	42	junction_4	17.7394334746068	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATTTGTTGTAATAATTC	8791	False	NA	NA	False	NA	NA	NA	57049203	57034620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_57035288_57036366_57036650_57041605_57041697_57041871_57042321_57049048
transcript_17382.known	chr14	+	1281	3	FSM	ENSMUSG00000021945.10	ENSMUST00000223669.2	1281	3	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	21.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTTCATGTTTTTATT	NA	False	NA	NA	False	AATAAA	-17	NA	57124109	57141324	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_57124156_57125251_57125315_57140152
transcript_17383.known	chr14	-	2406	2	FSM	ENSMUSG00000046352.8	ENSMUST00000055698.8	2406	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATGGTAAGTTTTTCTGG	NA	False	NA	NA	False	ATTAAA	-36	NA	57342159	57336056	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_57338229_57341925
transcript_17385.known	chr14	-	1497	8	FSM	ENSMUSG00000021947.12	ENSMUST00000022517.9	1497	8	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_7	4.40778532015472	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACAATCTATTTCTACAC	NA	False	NA	37	True	AATAAA	-16	NA	57635986	57512449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_57513020_57513373_57513481_57523821_57523928_57541049_57541245_57550424_57550587_57600378_57600506_57620214_57620323_57635864
transcript_17388.known	chr14	-	899	4	FSM	ENSMUSG00000021947.12	ENSMUST00000225765.2	899	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10.3387082795139	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAACAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57635953	57579080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_57579656_57600378_57600506_57620214_57620323_57635864
transcript_17389.known	chr14	+	3088	26	FSM	ENSMUSG00000040040.17	ENSMUST00000122063.8	3088	26	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_12	10.0195009855781	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTGAGGCTAATGACTTC	NA	False	NA	13	True	AATAAA	-15	NA	57661518	57755393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_57661645_57667994_57668091_57672251_57672315_57674683_57674741_57675698_57675753_57676322_57676387_57677162_57677233_57678387_57678479_57679334_57679440_57681811_57681915_57683021_57683137_57684997_57685230_57688127_57688199_57692917_57693005_57710431_57710532_57713499_57713587_57715347_57715535_57717353_57717463_57718113_57718265_57718852_57718969_57725028_57725082_57726348_57726415_57733629_57733737_57744661_57744729_57754437_57754549_57754793
transcript_1739.known	chr1	+	538	3	FSM	ENSMUSG00000026251.14	ENSMUST00000189970.2	538	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTTGTTGTTTTGAGA	NA	False	NA	NA	False	NA	NA	NA	87118328	87119488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_87118465_87118696_87118852_87119241
transcript_17392.known	chr14	-	836	5	FSM	ENSMUSG00000021951.8	ENSMUST00000022518.8	836	5	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_4	52.3115665986023	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTGTCATGAGGTTGAG	NA	False	NA	-9	True	AATAAA	-19	NA	57809026	57787054	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_57787337_57787818_57788100_57795490_57795574_57803378_57803542_57808999
transcript_17394.nnic	chr14	-	687	4	NIC	ENSMUSG00000021951.8	novel	880	5	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_3	119.268138615847	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGTCATGAGGTTGAGA	NA	False	NA	-8	True	AATAAA	-20	NA	57809039	57787053	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_57787337_57787818_57788100_57795490_57795574_57808999
transcript_17396.known	chr14	-	8680	23	FSM	ENSMUSG00000021952.17	ENSMUST00000174545.9	8680	23	0	0	0	0	multi-exon	FALSE	canonical	2	168	junction_17	47.2351467755642	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGGTTTGACCATGTG	NA	False	NA	-18	True	ACTAAA	-13	NA	57902887	57814977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_57819926_57822056_57822150_57823323_57823442_57824036_57824168_57825409_57825529_57827397_57827579_57828242_57828537_57831284_57831460_57834431_57834602_57835342_57835503_57839945_57840124_57841042_57841189_57841820_57841964_57842579_57842757_57850729_57850905_57851143_57851302_57855587_57855701_57866813_57866968_57867672_57867790_57875675_57875815_57880538_57880681_57885875_57885982_57902344
transcript_17397.known	chr14	-	707	4	FSM	ENSMUSG00000021952.17	ENSMUST00000172539.8	707	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	139.907906217705	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTAGAGAGATGGCTCAGCA	NA	False	NA	NA	False	AAAAAG	-15	NA	57902421	57879235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_57879618_57880538_57880681_57885875_57885982_57902344
transcript_17398.known	chr14	-	3456	23	FSM	ENSMUSG00000021952.17	ENSMUST00000089482.12	3456	23	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_17	74.741551942523	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAACAGAGCTATAAGCTT	NA	False	NA	NA	False	NA	NA	NA	57902413	57819727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_57819926_57822056_57822150_57823323_57823442_57824036_57824168_57825409_57825529_57827397_57827579_57828242_57828537_57831284_57831460_57834431_57834602_57835342_57835503_57839945_57840124_57841042_57841189_57841820_57841964_57842579_57842757_57850729_57850905_57851143_57851302_57855587_57855704_57866816_57866968_57867672_57867790_57875675_57875815_57880538_57880681_57885875_57885982_57902344
transcript_17401.known	chr14	-	2260	9	FSM	ENSMUSG00000021965.4	ENSMUST00000022536.3	2260	9	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_3	28.547110186497	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTTTATGTTGCCAACTC	NA	False	NA	-7	True	AATAAA	-19	NA	58063620	58044017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_58044989_58045431_58045536_58047399_58047601_58049036_58049123_58054101_58054209_58057610_58058020_58059492_58059659_58060357_58060420_58063466
transcript_17408.nnic	chr14	+	1899	5	NNC	ENSMUSG00000021963.18	novel	5125	4	NA	NA	-5	1137	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	1278.09944350978	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGAGTGACTGCCTATC	NA	False	NA	NA	False	NA	NA	NA	58035631	58040929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_58035812_58035944_58036055_58038950_58039074_58039378_58040732_58040796
transcript_1741.known	chr1	+	3473	8	FSM	ENSMUSG00000026254.18	ENSMUST00000113235.8	3473	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	1022.13094732005	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGAGTCTCCTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	87141635	87168210	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87160124_87160204_87165567
transcript_17410.known	chr14	+	5125	4	FSM	ENSMUSG00000021963.18	ENSMUST00000128764.9	5125	4	0	0	0	0	multi-exon	FALSE	canonical	3	2836	junction_1	125.222468697381	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTGGAATTTTTCCACTT	NA	False	NA	NA	False	NA	NA	NA	58035636	58044095	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_58035812_58035944_58036055_58038950_58039074_58039378
transcript_17412.known	chr14	+	521	3	FSM	ENSMUSG00000021963.18	ENSMUST00000143600.2	521	3	0	0	0	0	multi-exon	FALSE	canonical	3	2870	junction_1	123.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGGACTTTGCCATTAAGC	NA	False	NA	NA	False	AATAAA	-21	NA	58035882	58039604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_58036055_58038950_58039074_58039378
transcript_17413.known	chr14	+	2877	2	FSM	ENSMUSG00000021967.5	ENSMUST00000022538.5	2877	2	0	0	0	0	multi-exon	FALSE	canonical	3	956	junction_1	0	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTGCTGACCTACAAATA	NA	False	NA	NA	False	AATAAA	-12	NA	58063690	58066753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_58063780_58063965
transcript_17414.known	chr14	+	519	1	FSM	ENSMUSG00000021967.5	ENSMUST00000224313.2	519	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGTTGTCTCATACGGAA	NA	False	NA	25	True	ATTAAA	-17	NA	58063886	58064405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_58063900_58064400
transcript_17420.nnic	chr14	-	1829	13	NNC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	-72	652	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	63.7296808576838	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAGAAAAAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	58127805	58072496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_58073012_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
transcript_17421.known	chr14	-	5186	13	FSM	ENSMUSG00000021969.9	ENSMUST00000089473.5	5186	13	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	22.1702691308277	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGAAATCTGTTACAGGTG	NA	False	NA	58	True	NA	NA	NA	58127733	58070159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_58074104_58075047_58075125_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
transcript_17436.nic	chr14	-	1774	12	NIC	ENSMUSG00000021969.9	novel	5186	13	NA	NA	-72	144	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	61.0282416672129	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACACTCAAAGAAGGATTC	NA	False	NA	NA	False	AATAAA	-26	NA	58127805	58073566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_58074104_58076546_58076663_58078285_58078376_58080644_58080772_58084377_58084520_58094066_58094188_58095084_58095118_58095996_58096067_58102977_58103099_58111349_58111454_58115889_58115917_58127519
transcript_17442.known	chr14	-	2356	4	FSM	ENSMUSG00000021969.9	ENSMUST00000225955.2	2356	4	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	20.4015249974658	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAGAAACAGAGCA	NA	False	NA	NA	False	NA	NA	NA	58127677	58101031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_58103099_58111349_58111454_58115889_58115917_58127519
transcript_17446.known	chr14	+	3903	12	FSM	ENSMUSG00000035469.18	ENSMUST00000043227.13	3903	12	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	28.7856139459962	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTACAGTTGTGGTTG	NA	False	NA	6	True	AATAAA	-16	NA	59438676	59474714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_59439034_59447373_59447544_59447883_59448035_59455044_59455212_59458865_59459025_59460641_59460750_59462081_59462225_59463756_59463948_59465703_59465831_59467335_59467488_59467858_59467990_59472667
transcript_17449.known	chr14	+	1499	5	FSM	ENSMUSG00000035469.18	ENSMUST00000095778.8	1499	5	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_4	130.989264827313	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGTTGGCCTCTTTGTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	59438931	59459975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_59439034_59447373_59447544_59447883_59448035_59455044_59455212_59459066
transcript_17454.nnic	chr14	-	1469	11	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5215	0	at_least_one_novel_splicesite	FALSE	canonical	3	278	junction_1	39.5924235176378	504	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59608134	59586180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_59586501_59586670_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
transcript_17463.nnic	chr14	-	1558	10	NNC	ENSMUSG00000068245.15	novel	1130	10	NA	NA	-5134	0	intron_retention	FALSE	canonical	3	300	junction_3	34.2669260690571	309	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59608053	59586180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_59586838_59588595_59588668_59590099_59590232_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
transcript_17467.nnic	chr14	-	1212	9	NNC	ENSMUSG00000068245.15	novel	2666	11	NA	NA	-5162	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	114.076728564594	46	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTGTGCACCGTTTAT	NA	False	NA	-1	True	AATAAA	-16	NA	59608081	59586180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_59586501_59586670_59586838_59590766_59590831_59591756_59591825_59592588_59592639_59593765_59593900_59596924_59597033_59599182_59599305_59607902
transcript_17478.known	chr14	-	2995	14	FSM	ENSMUSG00000071350.13	ENSMUST00000161459.8	2995	14	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_12	10.965249034588	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTTTGTGATTATTAT	NA	False	NA	NA	False	TATAAA	-13	NA	59678333	59639457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_59639866_59644094_59644184_59646626_59646968_59649539_59649634_59650160_59650261_59650929_59651129_59653147_59653318_59654857_59654975_59656449_59657011_59660836_59660934_59663937_59664004_59668591_59668718_59674885_59675215_59678035
transcript_17479.nnic	chr14	-	2967	13	NIC	ENSMUSG00000071350.13	novel	2995	14	NA	NA	-38	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_10	30.6467326516584	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTTTTGTGATTATTAT	NA	False	NA	NA	False	TATAAA	-13	NA	59678371	59639457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_59639866_59644094_59644184_59646626_59646968_59649539_59649634_59650160_59650261_59650929_59651129_59653147_59653318_59654857_59654975_59656449_59657011_59660836_59660934_59668591_59668718_59674885_59675215_59678035
transcript_17483.known	chr14	+	3037	11	FSM	ENSMUSG00000021981.11	ENSMUST00000022553.6	3037	11	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_1	43.2892596379287	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTGGTCTCATTCCTCT	NA	False	NA	5	True	AATAAA	-12	NA	59678429	59786352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59784434
transcript_17487.nnic	chr14	+	1423	10	NIC	ENSMUSG00000021981.11	novel	3037	11	NA	NA	-20	-1583	combination_of_known_splicesites	FALSE	canonical	1	1	junction_7	105.444034655567	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAACCTAGAATAATATATT	NA	False	NA	-23	True	TATAAA	-22	NA	59678400	59784769	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59766290_59766357_59776510_59776655_59784434
transcript_17491.known	chr14	+	3546	5	FSM	ENSMUSG00000021981.11	ENSMUST00000224281.2	3546	5	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_1	44.997222136483	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	59678429	59740142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992
transcript_17494.known	chr14	+	1380	11	FSM	ENSMUSG00000021981.11	ENSMUST00000225595.2	1380	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	95.6287090783934	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGTGTCATCTTTACT	NA	False	NA	NA	False	AATAAA	-18	NA	59678429	59823213	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_59678468_59696542_59696691_59699083_59699152_59734251_59734394_59736992_59737158_59743713_59743833_59757014_59757184_59764204_59764265_59766290_59766357_59776510_59776655_59822952
transcript_17496.known	chr14	-	2202	10	FSM	ENSMUSG00000021982.15	ENSMUST00000056997.15	2202	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	34.1362556619393	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAACAAATAAAATGTTA	NA	False	NA	-32	True	NA	NA	NA	59835393	59801424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_59802045_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
transcript_17498.known	chr14	-	1892	10	FSM	ENSMUSG00000021982.15	ENSMUST00000171683.3	1892	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	37.821543276319	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACAGCTTCATAGTGTATA	NA	False	NA	NA	False	AATAAA	-29	NA	59835393	59805177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_59805488_59806396_59806458_59811095_59811286_59813182_59813353_59818773_59818824_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
transcript_175.known	SIRV6	-	276	1	FSM	SIRV6B	SIRV617	276	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	207	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTCTACTTGGGCACCT	NA	False	NA	NA	False	NA	NA	NA	1820	1544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6_-_1500_1800
transcript_17500.nnic	chr14	-	1646	6	NNC	ENSMUSG00000021982.15	novel	2579	5	NA	NA	-10	-71	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	44.777673007873	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGTCCACTTGCTATTC	NA	False	NA	NA	False	TATAAA	-18	NA	59835418	59822092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_59822603_59823487_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
transcript_17501.known	chr14	-	2579	5	FSM	ENSMUSG00000021982.15	ENSMUST00000225103.2	2579	5	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_3	7.29297607290741	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAATAGGGTCGTTTTG	NA	False	NA	NA	False	TATAAA	-37	NA	59835395	59822021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_59824058_59827236_59827415_59829909_59829985_59834310_59834409_59835203
transcript_17503.known	chr14	-	3913	15	FSM	ENSMUSG00000114797.2	ENSMUST00000041905.8	3913	15	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_2	25.178546099278	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTGTAGGTCTCAGCA	NA	False	NA	-16	True	AATAAA	-18	NA	60488956	60455526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_60457608_60459031_60459128_60460765_60460865_60466157_60466360_60469522_60469606_60469995_60470115_60471678_60471759_60475900_60476076_60476929_60476996_60478222_60478248_60479995_60480107_60480805_60480944_60481962_60482113_60484772_60484916_60488611
transcript_17504.known	chr14	+	3813	14	FSM	ENSMUSG00000021987.10	ENSMUST00000022563.9	3813	14	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	13.0256915000032	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGAGTGTTTTTCTTTT	NA	False	NA	9	True	ATTAAA	-13	NA	60502676	60539819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_60502811_60514577_60514695_60517531_60517695_60519385_60519544_60522365_60522495_60526991_60527127_60529442_60529576_60530366_60530477_60530832_60530959_60533568_60533619_60534022_60534224_60535511_60535644_60536363_60536491_60537721
transcript_17508.known	chr14	-	3958	10	FSM	ENSMUSG00000060548.14	ENSMUST00000111236.4	3958	10	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_9	15.475986974649	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAATTGATACTTGTTA	NA	False	NA	-26	True	AATACA	-32	NA	61275399	61201323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_61203915_61208277_61208681_61209429_61209533_61210950_61211077_61212038_61212204_61234053_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61275298
transcript_17510.known	chr14	-	744	6	FSM	ENSMUSG00000060548.14	ENSMUST00000225730.2	744	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	18.2756668824971	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTGGCTGAGACCTAAG	NA	False	NA	NA	False	NA	NA	NA	61275340	61211970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_61212204_61234053_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61275298
transcript_17511.nic	chr14	-	676	5	ISM	ENSMUSG00000060548.14	ENSMUST00000225730.2	744	6	-96	22014	-37	-22014	5prime_fragment	FALSE	canonical	3	37	junction_4	19.6532440070335	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTGTCTAGAAAGCCCT	NA	False	NA	NA	False	NA	NA	NA	61275436	61233984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61275298
transcript_17512.nic	chr14	-	992	5	ISM	ENSMUSG00000060548.14	ENSMUST00000224371.2	1239	6	-78	22175	-78	-22014	5prime_fragment	FALSE	canonical	3	46	junction_4	15.833114033569	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTGTCTAGAAAGCCCT	NA	False	NA	NA	False	NA	NA	NA	61284017	61233984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_61234140_61242523_61242703_61261617_61261729_61262192_61262286_61283563
transcript_17513.known	chr14	+	1482	2	FSM	ENSMUSG00000043157.9	ENSMUST00000055159.8	1482	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTGCATGCATGTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	61547201	61549385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_61547387_61548088
transcript_17515.known	chr14	-	10092	4	FSM	ENSMUSG00000021928.10	ENSMUST00000022494.10	10092	4	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_1	24.8506650928211	247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGCCTGTGGTCCTGT	NA	False	NA	NA	False	ATTAAA	-18	NA	61597888	61569190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_61578854_61579536_61579676_61584820_61584891_61597668
transcript_17517.known	chr14	-	4069	17	FSM	ENSMUSG00000021929.10	ENSMUST00000022496.9	4069	17	0	0	0	0	multi-exon	TRUE	canonical	2	379	junction_16	73.5790391347971	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACATTGAAAGACTTATT	6546	False	NA	-12	True	AATAAA	-22	NA	61677323	61602659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_61605179_61605576_61605672_61607831_61607995_61608150_61608223_61608319_61608425_61610406_61610536_61611732_61611865_61620683_61620729_61622036_61622207_61622551_61622639_61624872_61624959_61628612_61628709_61628847_61628901_61628996_61629027_61629204_61629295_61640446_61640492_61677171
transcript_17523.known	chr14	-	4002	5	FSM	ENSMUSG00000021930.15	ENSMUST00000022497.15	4002	5	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	8.67467578644874	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGAGTTACCTTACTCAAT	NA	False	NA	NA	False	NA	NA	NA	61794335	61769441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_61772691_61777585_61777689_61783130_61783298_61787192_61787310_61793969
transcript_17526.known	chr14	-	1459	4	FSM	ENSMUSG00000021930.15	ENSMUST00000100496.5	1459	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	60.8075287736277	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATTCAGTATTATATTTA	NA	False	NA	NA	False	AATAAA	-13	NA	61794207	61771753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_61772691_61783130_61783298_61787192_61787310_61793969
transcript_17528.known	chr14	+	1619	3	FSM	ENSMUSG00000035235.14	ENSMUST00000165015.9	1619	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	100	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGAGTTTGTGCTGTG	NA	False	NA	18	True	AATAAA	-16	NA	61835695	61843395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_61835796_61837242_61837345_61841978
transcript_17529.known	chr14	+	1550	3	FSM	ENSMUSG00000035235.14	ENSMUST00000039562.8	1550	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	49	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGAGTTTGTGCTGTG	NA	False	NA	18	True	AATAAA	-16	NA	61836988	61843395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_61837020_61837242_61837345_61841978
transcript_1753.known	chr1	+	1807	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113233.8	1807	7	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_1	498.771713534581	562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTGGGTTGTCTGAATG	NA	False	NA	NA	False	ATTAAA	-14	NA	87141635	87156578	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
transcript_17534.known	chr14	+	1494	11	FSM	ENSMUSG00000021932.14	ENSMUST00000022499.13	1494	11	0	0	0	0	multi-exon	TRUE	canonical	3	538	junction_2	112.951139879153	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCATAGTTTTGTTGCT	NA	False	NA	5	True	AATAAA	-17	NA	62569516	62610441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_62569626_62584016_62584092_62585969_62586078_62587848_62587926_62590971_62591087_62597911_62597977_62598777_62598884_62601478_62601561_62602707_62602751_62607920_62608002_62609808
transcript_17535.nic	chr14	+	535	4	NIC	ENSMUSG00000054763.10	novel	618	3	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	14.3527000944073	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCACCCCGTGGTCTTCCTT	NA	False	NA	-7	True	AATAAA	-2	NA	63284397	63286024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_63284500_63284892_63285068_63285676_63285752_63285841
transcript_17536.known	chr14	+	618	3	FSM	ENSMUSG00000054763.10	ENSMUST00000067990.8	618	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	3	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCCGTTTCAAATTCACC	NA	False	NA	28	True	AATAAA	-37	NA	63284439	63286059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_63284500_63284892_63285068_63285676
transcript_17537.known	chr14	-	721	3	FSM	ENSMUSG00000075571.9	ENSMUST00000111209.2	721	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCGAAGTATTGAGTGAG	NA	False	NA	NA	False	AATAAA	-20	NA	63287404	63271921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_63272277_63273378_63273551_63287210
transcript_17544.known	chr14	+	4743	10	FSM	ENSMUSG00000021939.9	ENSMUST00000006235.9	4743	10	0	0	0	0	multi-exon	FALSE	canonical	3	6333	junction_1	582.432086858605	1312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTTTCCTGTCATCATT	NA	False	NA	NA	False	ATTAAA	-18	NA	63359910	63383372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_63360015_63370764_63370916_63371413_63371500_63373056_63373172_63373855_63373975_63375481_63375568_63375799_63375944_63376447_63376565_63379182_63379312_63379680
transcript_1755.known	chr1	+	3394	7	FSM	ENSMUSG00000026254.18	ENSMUST00000076362.12	3394	7	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_6	847.519796556727	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGAGTCTCCTGCCTCT	NA	False	NA	NA	False	NA	NA	NA	87141635	87168210	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87165567
transcript_17556.known	chr14	-	2860	8	FSM	ENSMUSG00000021273.12	ENSMUST00000054963.10	2860	8	0	0	0	0	multi-exon	FALSE	canonical	3	727	junction_5	70.2819395037456	965	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCGAAGGTTTTAATGTT	4311	False	NA	NA	False	NA	NA	NA	63415242	63382601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_63384418_63388598_63388752_63389775_63389953_63394007_63394200_63396466_63396596_63400750_63400935_63401980_63402079_63415131
transcript_17566.known	chr14	+	1269	1	FSM	ENSMUSG00000021939.9	ENSMUST00000225639.2	1269	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	42	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAACTCA	NA	False	NA	NA	False	NA	NA	NA	63359962	63361231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_63360000_63361200
transcript_17589.known	chr14	-	2570	10	FSM	ENSMUSG00000035078.7	ENSMUST00000058679.7	2570	10	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_4	9.18936583472681	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAAGTGTGTGCCCTAGA	NA	False	NA	90	True	GATAAA	-16	NA	63781431	63760925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_63761667_63764239_63764392_63765559_63765781_63767173_63767316_63767636_63767799_63771775_63771994_63774440_63774615_63777702_63777829_63779796_63779906_63780906
transcript_1759.known	chr1	+	1119	7	FSM	ENSMUSG00000026254.18	ENSMUST00000113231.4	1119	7	0	0	0	0	multi-exon	FALSE	canonical	3	1076	junction_1	458.210801802935	727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTCATGCTCTTGCTC	NA	False	NA	15	True	AATAAA	-15	NA	87142007	87155786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818_87153956_87155522
transcript_17591.nnic	chr14	+	1494	8	NNC	ENSMUSG00000021958.6	novel	1295	7	NA	NA	-88	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_6	31.4324672910034	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGAGCCTTTCACATGA	3999	False	NA	NA	False	AATAAA	-39	NA	64097724	64157304	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_64097897_64101664_64101775_64103551_64103645_64105967_64106047_64109750_64109844_64115560_64115638_64130171_64130283_64156545
transcript_17593.known	chr14	+	1295	7	FSM	ENSMUSG00000021958.6	ENSMUST00000022528.6	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	11.9443152447793	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGAGCCTTTCACATGA	4087	False	NA	NA	False	AATAAA	-39	NA	64097812	64157304	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_64097897_64101664_64101775_64103551_64103645_64105967_64106047_64109750_64109844_64115560_64115638_64156545
transcript_17596.known	chr14	-	1860	11	FSM	ENSMUSG00000054733.10	ENSMUST00000067927.9	1860	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	33.9677788499631	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACCGCCTGCTGTGAGTC	NA	False	NA	-4	True	AATAAA	-20	NA	64693352	64360073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_64360803_64447876_64447984_64471277_64471383_64522512_64522633_64551135_64551205_64678158_64678476_64688412_64688488_64689845_64689925_64690910_64691013_64692207_64692343_64693330
transcript_17599.nnic	chr14	-	1016	3	NNC	ENSMUSG00000054733.10	novel	1860	11	NA	NA	204099	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	37	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACCGCCTGCTGTGAGTC	5663	False	NA	-4	True	AATAAA	-20	NA	64450298	64360073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_64360803_64447876_64447984_64450118
transcript_176.known	SIRV6	-	189	1	FSM	SIRV6C	SIRV618	189	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGTCTAGCTGTTTCTT	NA	False	NA	NA	False	NA	NA	NA	2547	2358	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6_-_2400_2500
transcript_17601.known	chr14	+	5603	40	FSM	ENSMUSG00000060012.10	ENSMUST00000100473.5	5603	40	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_38	17.1265545036071	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCACCTCCCTTGTGGAC	NA	False	NA	NA	False	NA	NA	NA	64889979	65043745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_64890106_64907072_64907167_64945940_64945954_64951522_64951584_64952836_64952930_64954922_64955104_64959755_64959844_64962148_64962284_64964522_64964636_64965661_64965774_64973596_64973810_64974943_64975055_64975955_64976091_64979755_64979887_64982324_64982412_64983747_64983939_64984377_64984589_64985894_64986058_64987661_64987809_64988954_64989105_64989416_64989546_64994862_64995034_64995999_64996158_64998117_64998251_65002451_65002599_65003159_65003190_65004802_65004903_65005061_65005189_65005868_65005925_65007990_65008113_65010359_65010537_65013685_65013779_65016762_65016916_65017139_65017218_65019790_65019845_65025856_65025969_65027013_65027148_65037793_65037896_65040473_65041180_65043479
transcript_17602.known	chr14	-	3396	11	FSM	ENSMUSG00000021972.15	ENSMUST00000022544.14	3396	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	9.87167665596883	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTGTCCGGGATTTCT	7685	False	NA	NA	False	AATAAA	-14	NA	65187299	65049048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_65050869_65054465_65054586_65063049_65063145_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
transcript_17604.known	chr14	-	1771	10	FSM	ENSMUSG00000021972.15	ENSMUST00000175744.8	1771	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	17.1276975887408	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGGTGTGCTCTGCATT	7679	False	NA	NA	False	AATACA	-24	NA	65187305	65062507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_65062820_65063049_65063142_65064220_65064317_65066034_65066118_65089333_65089488_65098964_65099076_65125023_65125110_65134098_65134576_65140687_65140768_65187025
transcript_17605.known	chr14	+	2677	17	FSM	ENSMUSG00000021975.10	ENSMUST00000239450.2	2677	17	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_12	28.2795752266543	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGTTCTATTGCACTACA	NA	False	NA	20	True	AATAAA	-20	NA	65187493	65277284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_65187817_65217570_65217699_65223751_65223813_65227980_65228044_65230422_65230563_65232430_65232518_65244694_65244816_65245439_65245575_65253978_65254091_65257764_65257946_65263853_65263915_65266334_65266507_65269668_65269794_65271376_65271545_65273846_65273946_65274794_65274933_65276721
transcript_17610.known	chr14	+	3781	8	FSM	ENSMUSG00000034532.10	ENSMUST00000224629.2	3781	8	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_5	3.88087934491604	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTGTCTATTGTAGGTAT	2538	False	NA	NA	False	AATAAA	-13	NA	65504066	65561420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_65504233_65508148_65508285_65524580_65524617_65531232_65531440_65532841_65533007_65536634_65536865_65540548_65540652_65558682
transcript_17611.known	chr14	+	1019	7	FSM	ENSMUSG00000034532.10	ENSMUST00000169656.3	1019	7	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_5	4.01732359773132	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATCATCAAGTGGTTGTT	2652	False	NA	NA	False	NA	NA	NA	65504180	65540741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_65504233_65508148_65508285_65524580_65524617_65531232_65531440_65532841_65533007_65536634_65536865_65540548
transcript_17614.known	chr14	-	2851	15	FSM	ENSMUSG00000022031.7	ENSMUST00000022609.7	2851	15	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_14	46.0192949772602	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCGTCGTGTGGTGCTTT	3444	False	NA	NA	False	AATAAA	-16	NA	65830524	65767897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830373
transcript_17615.known	chr14	-	2771	15	FSM	ENSMUSG00000022031.7	ENSMUST00000225355.2	2771	15	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_14	90.9467493893531	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTCGTCGTGTGGTGCTTT	3467	False	NA	NA	False	AATAAA	-16	NA	65830501	65767897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_65769050_65784582_65784665_65785314_65785543_65786868_65786935_65788833_65788925_65797569_65797764_65800700_65800828_65802760_65802923_65815373_65815529_65818196_65818266_65819563_65819628_65820338_65820410_65823706_65823846_65827954_65828055_65830430
transcript_17618.nnic	chr14	+	1172	8	NNC	ENSMUSG00000061356.14	novel	2745	19	NA	NA	19896	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	15.89121179284	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACTGCTACATCATTA	6112	False	NA	NA	False	AATAAA	-35	NA	65862611	65885893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_65862711_65872451_65872617_65875999_65876158_65877431_65877571_65878687_65878797_65879306_65879444_65882458_65882550_65885619
transcript_17620.nnic	chr14	+	1175	8	NNC	ENSMUSG00000061356.14	novel	2745	19	NA	NA	21186	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	15.2917211161425	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACTGCTACATCATTA	7402	False	NA	NA	False	AATAAA	-35	NA	65863901	65885893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_65864004_65872451_65872617_65875999_65876158_65877431_65877571_65878687_65878797_65879306_65879444_65882458_65882550_65885619
transcript_17624.known	chr14	+	3794	9	FSM	ENSMUSG00000022032.15	ENSMUST00000022610.15	3794	9	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	7.61474720525902	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGCTGATAAGTGGTCCA	818	False	NA	NA	False	AATAAA	-19	NA	65903851	66002275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_65904196_65908005_65908124_65927216_65927346_65967969_65968645_65975872_65975954_65977738_65977838_65979580_65979629_65997033_65997229_66000170
transcript_17627.known	chr14	+	1720	8	FSM	ENSMUSG00000022033.10	ENSMUST00000022612.10	1720	8	0	0	0	0	multi-exon	FALSE	canonical	3	729	junction_5	59.6342594316319	738	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGCATTATCTGTTTTT	NA	False	NA	25	True	AATAAA	-41	NA	66043285	66055271	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_66043584_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
transcript_17631.nic	chr14	+	1548	8	NIC	ENSMUSG00000022033.10	novel	451	5	NA	NA	-55	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_1	250.309767272148	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGCATTATCTGTTTTT	NA	False	NA	25	True	AATAAA	-41	NA	66043625	66055271	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_66043752_66046663_66046739_66049379_66049474_66050414_66050558_66051255_66051426_66052620_66052751_66054048_66054226_66054638
transcript_17633.known	chr14	-	2913	11	FSM	ENSMUSG00000022034.11	ENSMUST00000022613.10	2913	11	0	0	0	0	multi-exon	FALSE	canonical	3	933	junction_8	61.5078043828586	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCATTGTTCAGTGGCTTG	6344	False	NA	-11	True	ATTAAA	-14	NA	66071443	66056486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_66057548_66059029_66059191_66061566_66061708_66062294_66062385_66063928_66064061_66064616_66064738_66065917_66065973_66067110_66067202_66068453_66069244_66070112_66070191_66071250
transcript_17635.known	chr14	-	326	3	FSM	ENSMUSG00000022034.11	ENSMUST00000225853.2	326	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	560.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAATAAAAAAAAACAGAAGA	6430	False	NA	NA	False	NA	NA	NA	66071357	66068874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_66069016_66070112_66070191_66071250
transcript_1764.known	chr1	+	1125	6	FSM	ENSMUSG00000026254.18	ENSMUST00000113232.8	1125	6	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_1	545.938677875089	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCACCTTTGCATGTCTG	NA	False	NA	NA	False	AATAAA	-23	NA	87141635	87154329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_87141742_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818
transcript_17640.known	chr14	+	2230	9	FSM	ENSMUSG00000022035.7	ENSMUST00000022614.7	2230	9	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_2	11.4229757506527	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCATTGATATCTGAATTC	NA	False	NA	31	True	AATAAA	-20	NA	66074750	66104056	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_66074934_66077896_66077945_66083744_66083785_66089065_66089118_66091550_66091627_66093872_66093977_66094142_66094346_66097618_66097665_66102578
transcript_17645.known	chr14	+	1810	9	FSM	ENSMUSG00000022037.16	ENSMUST00000022616.14	1810	9	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_1	2.72717802865893	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTGGGTCTGTTTTTTA	NA	False	NA	13	True	AATAAA	-20	NA	66205931	66218996	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_66206138_66209180_66209302_66210773_66210923_66212291_66212463_66213029_66213442_66214354_66214460_66217099_66217330_66218302_66218479_66218756
transcript_17646.known	chr14	-	2263	12	FSM	ENSMUSG00000034450.9	ENSMUST00000059970.9	2263	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	1.97086212624353	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTGCCCTTGAGGAAT	NA	False	NA	NA	False	ATTAAA	-16	NA	66246656	66224234	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_66225144_66225630_66225722_66227827_66227993_66228478_66228629_66234272_66234350_66235008_66235117_66237282_66237469_66240039_66240131_66241530_66241626_66243285_66243412_66245487_66245590_66246493
transcript_17648.known	chr14	-	2035	19	FSM	ENSMUSG00000022040.9	ENSMUST00000070515.2	2035	19	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_15	18.7001188350354	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGTTTCTTGTGTTCTTG	NA	False	NA	-5	True	AATAAA	-16	NA	66361949	66321825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_66322210_66322379_66322439_66322744_66322826_66323682_66323753_66324413_66324517_66325748_66325783_66326954_66327030_66330247_66330360_66332186_66332273_66333134_66333162_66336252_66336288_66339041_66339121_66339595_66339692_66341174_66341244_66344662_66344786_66345425_66345617_66347564_66347725_66354159_66354245_66361783
transcript_17649.known	chr14	+	3678	6	FSM	ENSMUSG00000022043.20	ENSMUST00000022623.13	3678	6	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_4	10.4957134107215	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTTGTTTTTTATTGTC	NA	False	NA	31	True	NA	NA	NA	66534479	66548873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_66534999_66540629_66540726_66541453_66541685_66544474_66544498_66545260_66545380_66546183
transcript_17650.known	chr14	-	764	3	FSM	ENSMUSG00000085984.8	ENSMUST00000153646.8	764	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	2	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAGGCAAGGCCTTAC	NA	False	NA	NA	False	TTTAAA	-40	NA	66534578	66532782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_66533036_66533403_66533594_66534257
transcript_17651.known	chr14	+	1057	1	FSM	ENSMUSG00000022043.20	ENSMUST00000223737.2	1057	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-16	NA	66534514	66535571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_66534500_66535600
transcript_17652.nnic	chr14	+	2228	4	NNC	ENSMUSG00000046204.15	novel	5518	3	NA	NA	-27	-1286	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	11.7756811551038	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACAAGACTAAGTTCCAATA	NA	False	NA	NA	False	NA	NA	NA	67148591	67154978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_67148743_67151755_67151933_67152770_67152900_67153207
transcript_17653.known	chr14	+	5518	3	FSM	ENSMUSG00000046204.15	ENSMUST00000089236.11	5518	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	6.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTCTGCCCAAGACAGTT	NA	False	NA	NA	False	AATAAA	-15	NA	67148618	67158472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_67148743_67152770_67152900_67153207
transcript_17660.known	chr14	-	3238	6	FSM	ENSMUSG00000022051.16	ENSMUST00000022634.9	3238	6	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	44.8508639827596	341	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTCCATATATCATTTT	NA	False	NA	-12	True	ATTAAA	-16	NA	67246326	67222687	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_67225225_67226583_67226734_67226854_67226959_67231325_67231399_67236969_67237154_67246136
transcript_17666.nic	chr14	-	2489	11	NIC	ENSMUSG00000022052.10	novel	2192	11	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_8	281.93305943078	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGAATCTGGTTTTCTTT	NA	False	NA	-5	True	AATAAA	-13	NA	67309919	67253122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_67254103_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67275386_67275458_67276323_67276422_67307683_67307759_67309538
transcript_17668.known	chr14	-	4010	10	FSM	ENSMUSG00000022052.10	ENSMUST00000089230.7	4010	10	0	0	0	0	multi-exon	FALSE	canonical	3	602	junction_4	68.1900032498157	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATAGACTTCATAATAACT	NA	False	NA	NA	False	AATAAA	-22	NA	67309893	67251504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_67254103_67257164_67257257_67259722_67259893_67260474_67260640_67261081_67261260_67261976_67262090_67266313_67266480_67276323_67276422_67307683_67307759_67309538
transcript_17673.known	chr14	-	3841	15	FSM	ENSMUSG00000048922.19	ENSMUST00000163100.8	3841	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	110.056131318597	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTTCCAGATTGTTCAAA	NA	False	NA	-34	True	ATTAAA	-16	NA	67953059	67913803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_67915472_67917610_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
transcript_17677.known	chr14	-	2034	14	FSM	ENSMUSG00000048922.19	ENSMUST00000132705.8	2034	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	101.200837286337	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGGAAAAAAGATGTTGAAAA	NA	False	NA	NA	False	AATACA	-42	NA	67953059	67917749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_67917780_67931074_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
transcript_17679.nic	chr14	-	1818	13	ISM	ENSMUSG00000048922.19	ENSMUST00000132705.8	2034	14	186	13325	-49	507	5prime_fragment	FALSE	canonical	3	294	junction_1	37.2449661028172	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGAATGCTTTTCACATT	NA	False	NA	NA	False	AAAAAG	-34	NA	67952873	67931074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952672
transcript_1768.known	chr1	+	1569	6	FSM	ENSMUSG00000026254.18	ENSMUST00000113230.8	1569	6	0	0	0	0	multi-exon	FALSE	canonical	3	1076	junction_1	501.781067797501	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTGACCCCACCTTTGC	NA	False	NA	NA	False	AATAAA	-16	NA	87141660	87154322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_87142218_87147302_87147418_87148641_87148777_87152074_87152180_87153571_87153725_87153818
transcript_17680.nic	chr14	-	1729	13	NIC	ENSMUSG00000048922.19	novel	2034	14	NA	NA	10	507	combination_of_known_junctions	FALSE	canonical	3	113	junction_12	75.845237160945	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGAATGCTTTTCACATT	NA	False	NA	NA	False	AAAAAG	-34	NA	67953049	67931074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_67931204_67932413_67932500_67934115_67934192_67935387_67935621_67936137_67936211_67937631_67937868_67941416_67941493_67943079_67943247_67944801_67944950_67950536_67950692_67952131_67952306_67952390_67952455_67952937
transcript_17684.known	chr14	+	1302	12	FSM	ENSMUSG00000034327.18	ENSMUST00000150768.8	1302	12	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_9	22.4881970879051	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATCCATCCATCGAGTTG	NA	False	NA	NA	False	NA	NA	NA	67953710	67977918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_67953834_67962006_67962129_67963775_67963820_67966098_67966196_67966799_67966859_67967053_67967183_67970609_67970678_67970795_67970892_67971589_67971740_67975054_67975161_67975825_67975960_67977744
transcript_17687.known	chr14	+	3157	11	FSM	ENSMUSG00000034327.18	ENSMUST00000078053.13	3157	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	27.0325729445053	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGTGGTTTCCTGACTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	67953546	67979759	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_67953834_67962006_67962129_67963775_67963820_67966098_67966196_67966799_67966859_67967053_67967183_67970609_67970678_67970795_67970892_67975054_67975161_67975825_67975960_67977744
transcript_17688.known	chr14	-	640	3	FSM	ENSMUSG00000114621.2	ENSMUST00000223853.2	640	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTCTTTCTGCTTTTCTT	NA	False	NA	NA	False	AATAAA	-45	NA	68288779	68281876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_68282134_68282294_68282454_68288555
transcript_17690.known	chr14	+	3380	4	FSM	ENSMUSG00000022055.8	ENSMUST00000022639.8	3380	4	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_3	13.589211407093	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTGTGCAGTCTTTTTTT	NA	False	NA	12	True	AATAAA	-26	NA	68321311	68326544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_68322459_68323422_68323548_68323935_68324256_68324756
transcript_17691.known	chr14	-	2212	4	FSM	ENSMUSG00000034248.8	ENSMUST00000184914.2	2212	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	77.0512095225564	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTGAATTTCTCTTTT	687	False	NA	-8	True	NA	NA	NA	69522416	69481624	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_69482804_69485029_69485087_69486331_69487072_69522180
transcript_17692.known	chr14	-	4174	4	FSM	ENSMUSG00000034248.8	ENSMUST00000037064.5	4174	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	79.79974937304	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATTGTGGGGTCTTTGTGG	542	False	NA	-4	True	AATAAA	-16	NA	69522561	69479296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_69482804_69485029_69485087_69486842_69487072_69522180
transcript_17695.known	chr14	+	3589	13	FSM	ENSMUSG00000095463.9	ENSMUST00000184973.8	3589	13	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_8	36.1504379872038	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGACGTCTTTCCCTTG	7301	False	NA	NA	False	NA	NA	NA	69574622	69604719	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_69574738_69584934_69585044_69586521_69586720_69588151_69588358_69591850_69592002_69592842_69592947_69594161_69594222_69594443_69594599_69596270_69596438_69599087_69599413_69601016_69601103_69601771_69601934_69602968
transcript_17696.known	chr14	+	989	4	FSM	ENSMUSG00000095463.9	ENSMUST00000184314.8	989	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	92.0144916122817	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTGGAAGTGCCTGAGAG	7325	False	NA	NA	False	TTTAAA	-6	NA	69574646	69587782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_69574738_69584934_69585044_69586521_69586720_69587191
transcript_17697.nnic	chr14	+	2993	13	NNC	ENSMUSG00000022066.17	novel	3589	13	NA	NA	-8	474	at_least_one_novel_splicesite	FALSE	canonical	3	116	junction_8	28.7614711414806	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGACATTTTAAACAGAAA	NA	False	NA	NA	False	AATAAA	-20	NA	69792864	69822389	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_69792988_69803184_69803294_69804771_69804970_69806401_69806608_69810100_69810252_69811092_69811197_69812411_69812472_69812693_69812825_69814520_69814688_69817337_69817663_69819266_69819353_69820021_69820184_69821218
transcript_17698.known	chr14	+	989	4	FSM	ENSMUSG00000022066.17	ENSMUST00000064846.8	989	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	92.2689306080631	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTTGGAAGTGCCTGAGAG	NA	False	NA	NA	False	TTTAAA	-6	NA	69792896	69806032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_69792988_69803184_69803294_69804771_69804970_69805441
transcript_177.known	SIRV6	+	1969	1	FSM	SIRV6A	SIRV603	1969	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	646	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGGAAGATTTCGACCGAA	NA	False	NA	NA	False	ATTAAA	-26	NA	8999	10968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6_+_9000_11000
transcript_17700.known	chr14	-	1726	8	FSM	ENSMUSG00000034194.19	ENSMUST00000118374.8	1726	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_7	41.9007573844168	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGATTGCGTCCAAGTG	NA	False	NA	-6	True	AATAAA	-15	NA	69945033	69934755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_69935052_69936032_69936129_69937408_69937480_69941402_69941576_69942582_69943328_69943995_69944134_69944502_69944631_69944954
transcript_17702.known	chr14	-	1958	7	FSM	ENSMUSG00000034194.19	ENSMUST00000121142.4	1958	7	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_3	17.7333646616265	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTGATTGCGTCCAAGT	NA	False	NA	-7	True	AATAAA	-14	NA	69944942	69934756	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_69935052_69936032_69936129_69937408_69937480_69941402_69941576_69942582_69943328_69943995_69944134_69944502
transcript_17703.known	chr14	-	2649	10	FSM	ENSMUSG00000034190.10	ENSMUST00000036381.10	2649	10	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_7	17.0583602471336	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGTTGTTGTCTATTC	NA	False	NA	-2	True	ATTAAA	-15	NA	69969983	69954448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_69955750_69955963_69956147_69956577_69956639_69956847_69956947_69957196_69957317_69957560_69957610_69958376_69958511_69958655_69958842_69967571_69967744_69969639
transcript_17705.known	chr14	-	3115	8	FSM	ENSMUSG00000034190.10	ENSMUST00000225036.2	3115	8	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_5	16.4788051875178	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGTTGTTGTCTATTC	NA	False	NA	-2	True	ATTAAA	-15	NA	69969990	69954448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_69955750_69955963_69956147_69956577_69957317_69957560_69957610_69958376_69958511_69958655_69958842_69967571_69967744_69969639
transcript_17707.known	chr14	+	3179	8	FSM	ENSMUSG00000022074.7	ENSMUST00000022663.7	3179	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	19.7556501863572	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCAGTGTACGTGGCCCTC	NA	False	NA	4	True	NA	NA	NA	70004920	70021860	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_70005241_70008229_70008327_70010825_70010937_70012534_70012644_70013520_70013718_70015169_70015265_70017952_70018023_70019680
transcript_17709.known	chr14	-	3725	21	FSM	ENSMUSG00000033712.7	ENSMUST00000035612.7	3725	21	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	38.4373191052654	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGTGAGTCTTTGTAG	NA	False	NA	44	True	AATAAA	-18	NA	70391260	70375616	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_70376397_70376618_70376825_70376940_70377130_70377208_70377321_70377435_70377583_70377913_70377997_70378316_70378462_70379059_70379297_70379391_70379620_70379808_70379981_70380373_70380538_70380847_70380962_70381036_70381260_70383291_70383412_70388460_70388558_70388722_70388853_70389009_70389125_70389328_70389421_70389821_70389914_70390112_70390207_70391075
transcript_17710.known	chr14	+	1767	9	FSM	ENSMUSG00000022089.10	ENSMUST00000022680.9	1767	9	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_3	8.98523093748847	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	70337553	70375655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_70337646_70356052_70356102_70361289_70361331_70361631_70361694_70366298_70366436_70366966_70367008_70371898_70372041_70372184_70372320_70374587
transcript_17713.nic	chr14	-	2029	10	ISM	ENSMUSG00000022091.7	ENSMUST00000227259.2	2481	21	12274	-464	12274	0	3prime_fragment	FALSE	canonical	3	14	junction_5	4.24554959434284	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTGTCTGCTTCATTA	NA	False	NA	NA	False	AATAAA	-16	NA	70429798	70417916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_70418681_70421114_70421222_70421455_70421557_70422276_70422586_70424307_70424434_70428176_70428292_70428464_70428512_70428596_70428650_70428881_70429025_70429534
transcript_17715.known	chr14	-	2016	9	FSM	ENSMUSG00000000776.14	ENSMUST00000000793.13	2016	9	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_3	16.2244992218558	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAGTAAGTGGTTCTGCT	1731	False	NA	-7	True	AATAAA	-17	NA	70680887	70676196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_70677019_70677157_70677311_70677453_70677720_70678038_70678208_70678476_70678602_70678743_70678896_70679791_70679836_70680390_70680561_70680772
transcript_17716.known	chr14	-	2032	8	FSM	ENSMUSG00000000776.14	ENSMUST00000180358.3	2032	8	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_3	15.9910689359494	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGAGTCTATTTCCAAAT	1888	False	NA	-10	True	AATAAA	-17	NA	70680730	70676235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_70677019_70677157_70677311_70677453_70677720_70678038_70678208_70678476_70678602_70678743_70678896_70679791_70679836_70680390
transcript_17719.known	chr14	+	1001	5	FSM	ENSMUSG00000033595.8	ENSMUST00000226548.2	1001	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTGCAGCCATTTGCTA	NA	False	NA	NA	False	ATTAAA	-11	NA	70768309	70771168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_70768711_70769507_70769580_70770214_70770287_70770616_70770689_70770784
transcript_1772.known	chr1	+	1854	4	FSM	ENSMUSG00000026255.16	ENSMUST00000027472.7	1854	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	0.942809041582063	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCAGTGTGCCTTTTTGGT	1408	False	NA	NA	False	AATAAA	-25	NA	87192084	87238561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_87192477_87217189_87217338_87225350_87225486_87237382
transcript_17720.known	chr14	+	1565	8	FSM	ENSMUSG00000033589.5	ENSMUST00000047218.5	1565	8	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_3	37.0515360886781	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTCTCTTCACATCTC	6567	False	NA	30	True	AATAAA	-26	NA	70782793	70786373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_70783179_70783916_70783990_70784369_70784447_70784554_70784676_70785106_70785221_70785379_70785516_70785624_70785780_70785869
transcript_17721.known	chr14	+	1444	7	FSM	ENSMUSG00000033589.5	ENSMUST00000226563.2	1444	7	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_2	32.9313258497471	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGTGGTACCCTGCACAG	6464	False	NA	NA	False	NA	NA	NA	70782690	70786041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_70783179_70783916_70783990_70784369_70784676_70785106_70785221_70785379_70785516_70785624_70785780_70785869
transcript_17725.known	chr14	+	3926	3	FSM	ENSMUSG00000045211.6	ENSMUST00000089049.4	3926	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	3	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTACACACCTGTAACTCCA	NA	False	NA	NA	False	AAAACA	-25	NA	70815076	70820011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_70815551_70816351_70816566_70816773
transcript_17726.nnic	chr14	+	1380	3	NNC	ENSMUSG00000045211.6	novel	3926	3	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	22	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTGCTTGCCTAAATG	NA	False	NA	NA	False	AGTAAA	-15	NA	70815268	70817721	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_70815551_70816415_70816566_70816773
transcript_17727.known	chr14	-	5418	16	FSM	ENSMUSG00000022099.18	ENSMUST00000022694.17	5418	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	61.6256079528272	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGTTTCCTTTTCCTT	NA	False	NA	NA	False	ATTAAA	-17	NA	70864748	70838702	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_70842295_70842407_70842489_70842736_70842803_70842980_70842989_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70864178
transcript_17732.known	chr14	-	4176	15	FSM	ENSMUSG00000022099.18	ENSMUST00000110984.4	4176	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	58.3538205034335	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATCCTTGAAACAGACCT	NA	False	NA	NA	False	AGTAAA	-20	NA	70864494	70839624	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_70842295_70842407_70842489_70842980_70842989_70843132_70843182_70843333_70843399_70850107_70850214_70850735_70850861_70852282_70852436_70852673_70852731_70853053_70853154_70853513_70853559_70854724_70854881_70855394_70855470_70855678_70855849_70864178
transcript_17739.nnic	chr14	-	1420	6	NNC	ENSMUSG00000022101.7	novel	1689	5	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	18.6826122370508	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGTCCGCTGAAGAAAGG	NA	False	NA	0	True	AATAAA	-16	NA	70879757	70873642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_70874464_70875906_70876014_70876241_70876420_70878971_70879009_70879162_70879267_70879584
transcript_1774.known	chr1	+	353	2	FSM	ENSMUSG00000026255.16	ENSMUST00000150831.2	353	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGGCTCCGCCAGGCAGCC	NA	False	NA	NA	False	NA	NA	NA	87236947	87237464	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_87237219_87237382
transcript_17741.known	chr14	-	1336	5	FSM	ENSMUSG00000022101.7	ENSMUST00000227123.2	1336	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	9.90896059130321	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCCGGCAGAAGAAATAGG	NA	False	NA	NA	False	NA	NA	NA	70879694	70873948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_70874464_70875906_70876014_70876241_70876387_70878971_70879009_70879162
transcript_17742.known	chr14	-	1689	5	FSM	ENSMUSG00000022101.7	ENSMUST00000022697.7	1689	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	15.3195136998535	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGGTCCGCTGAAGAAAGG	NA	False	NA	0	True	AATAAA	-16	NA	70879708	70873642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_70874464_70875906_70876014_70876241_70876420_70878971_70879009_70879162
transcript_17746.nic	chr14	-	1177	4	ISM	ENSMUSG00000022101.7	ENSMUST00000022697.7	1689	5	-90	2045	-90	-1739	5prime_fragment	FALSE	canonical	3	21	junction_2	17.4610678049451	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATATGAGTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	70879798	70875687	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_70876014_70876241_70876420_70878971_70879009_70879162
transcript_17747.known	chr14	-	4472	28	FSM	ENSMUSG00000022100.15	ENSMUST00000022696.8	4472	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	88.8509332544799	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGAACATTGGATGGAGAAA	NA	False	NA	NA	False	AATAAA	-37	NA	71003994	70902257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_70903535_70904461_70904590_70906099_70906199_70906756_70906918_70907990_70908130_70908491_70908707_70909088_70909172_70914146_70914255_70915518_70915608_70918678_70918786_70919772_70919882_70920232_70920297_70921095_70921177_70922299_70922374_70922861_70922998_70925067_70925174_70925566_70925761_70928421_70928595_70930090_70930238_70931356_70931477_70933053_70933128_70933990_70934157_70936381_70936487_70939159_70939226_70940662_70940830_70942103_70942198_70944726_70944874_71003951
transcript_17749.known	chr14	-	997	9	FSM	ENSMUSG00000047911.7	ENSMUST00000062629.5	997	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	2.75850956133924	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACCTCCCTCTGCCTCCCCC	NA	False	NA	NA	False	AATAAA	-15	NA	70890524	70884741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_70884990_70885076_70885111_70885484_70885526_70885699_70885852_70886910_70887005_70889562_70889677_70889768_70889855_70889971_70890136_70890460
transcript_1775.known	chr1	+	5724	29	FSM	ENSMUSG00000048000.16	ENSMUST00000027475.15	5724	29	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_9	29.4000164861817	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTGTGGTCTCTCTGAG	NA	False	NA	7	True	AATAAA	-17	NA	87254724	87378518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87291825_87291956_87292905_87293002_87301718_87301834_87306693_87306806_87307689_87307731_87331388_87331569_87334705_87334924_87335014_87335178_87335256_87335446_87338383_87338581_87339429_87339590_87344539_87344707_87346809_87346902_87348006_87348115_87349212_87349314_87350902_87351004_87352786_87352949_87356291_87356451_87361401_87361639_87364490_87364614_87368109_87368335_87368438_87368645_87369732_87369888_87371366_87371549_87374033_87374182_87376799
transcript_17750.nic	chr14	+	1753	5	NIC	ENSMUSG00000022102.14	novel	404	3	NA	NA	-71	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	2.38484800354236	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGTGGCCTGTAATGC	NA	False	NA	NA	False	ATTAAA	-16	NA	71010640	71015935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_71010805_71012905_71013188_71013423_71013512_71014255_71014438_71014898
transcript_17754.known	chr14	-	6143	26	FSM	ENSMUSG00000033487.15	ENSMUST00000089017.12	6143	26	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_25	24.1979833870511	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTTTTTGTATTTATAA	NA	False	NA	-1	True	AATAAA	-24	NA	72947443	72775385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_72777922_72789911_72790040_72790821_72790989_72793586_72793800_72793897_72794182_72794278_72794429_72795073_72795188_72796419_72796596_72796681_72796788_72799037_72799157_72800923_72800993_72802045_72802185_72803536_72803624_72804749_72804925_72806281_72806407_72808874_72808929_72810729_72810869_72811791_72811852_72811962_72812121_72820396_72820456_72822014_72822285_72827193_72827432_72836505_72836583_72889455_72889532_72921073_72921212_72947157
transcript_17756.known	chr14	-	1262	4	FSM	ENSMUSG00000033487.15	ENSMUST00000162922.8	1262	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_3	15.5134350376268	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72947437	72835814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_72836583_72889455_72889532_72921073_72921212_72947157
transcript_17759.known	chr14	+	3622	16	FSM	ENSMUSG00000022106.15	ENSMUST00000169513.8	3622	16	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	12.7774106227444	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATTAATTTTATTGCCT	NA	False	NA	NA	False	TATAAA	-23	NA	73380538	73421658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_73380629_73388972_73389056_73391754_73391849_73392270_73392335_73395827_73395886_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
transcript_17760.nic	chr14	+	2214	15	NIC	ENSMUSG00000022106.15	novel	3573	16	NA	NA	50	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_9	6.89720440261332	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGCCATTGACGAAC	NA	False	NA	NA	False	NA	NA	NA	73380352	73420122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_73380629_73388972_73389056_73391754_73391849_73392270_73392335_73399379_73399536_73399766_73399918_73402123_73402291_73403919_73404079_73404204_73404313_73405429_73405573_73411162_73411354_73411829_73411957_73414434_73414575_73415872_73416004_73419898
transcript_17764.known	chr14	+	591	4	FSM	ENSMUSG00000022106.15	ENSMUST00000165646.8	591	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	3.29983164553722	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCCTTTCCCAAATATTAAA	NA	False	NA	NA	False	NA	NA	NA	73380549	73392605	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_73380629_73388972_73389056_73391754_73391849_73392270
transcript_17767.known	chr14	-	1796	6	FSM	ENSMUSG00000022108.9	ENSMUST00000022704.9	1796	6	0	0	0	0	multi-exon	FALSE	canonical	3	633	junction_1	88.6128658830082	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTGGATGCTGTTTC	NA	False	NA	NA	False	AATAAA	-26	NA	73622729	73599665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_73600584_73601981_73602133_73603191_73603303_73603760_73603968_73605738_73605868_73622449
transcript_1777.nic	chr1	+	1064	5	ISM	ENSMUSG00000048000.16	ENSMUST00000173850.8	2520	9	-76	25035	-26	193	5prime_fragment	FALSE	canonical	3	140	junction_4	32.0078115465584	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAACAAACATTT	NA	False	NA	NA	False	NA	NA	NA	87254693	87293570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_87254815_87261991_87262057_87282125_87282209_87291825_87291956_87292905
transcript_17771.known	chr14	+	1328	7	FSM	ENSMUSG00000022109.7	ENSMUST00000022705.7	1328	7	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_6	14.7356333046425	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTTTTTTCAATTTTT	NA	False	NA	15	True	AATAAA	-17	NA	73747464	73755985	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754163_73754646_73754779_73755333
transcript_17774.known	chr14	+	2103	6	FSM	ENSMUSG00000022109.7	ENSMUST00000228141.2	2103	6	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_5	13.5735036007657	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGTCACAATTAAGTCTCT	NA	False	NA	NA	False	AATAAA	-17	NA	73747477	73756289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_73747626_73748594_73748662_73751244_73751416_73752729_73752788_73754075_73754779_73755333
transcript_17775.known	chr14	+	1455	1	FSM	ENSMUSG00000022109.7	ENSMUST00000226256.2	1455	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	73747471	73748926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_73747500_73748900
transcript_17779.known	chr14	+	1545	12	FSM	ENSMUSG00000022110.14	ENSMUST00000022706.7	1545	12	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_11	475.849184386179	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAGCTTTATTCTTTAGT	NA	False	NA	NA	False	AATAAA	-13	NA	73790205	73833223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813_73832914_73833137
transcript_1778.known	chr1	+	995	4	FSM	ENSMUSG00000048000.16	ENSMUST00000174846.8	995	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	89.5408038581046	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAATAGTTTCATTGTAT	NA	False	NA	NA	False	AATAAA	-15	NA	87254719	87283444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87282692
transcript_17786.known	chr14	+	2229	11	FSM	ENSMUSG00000022110.14	ENSMUST00000160507.8	2229	11	0	0	0	0	multi-exon	FALSE	canonical	3	1524	junction_2	74.4957045741565	1121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGGAGTTATGGGTTTT	NA	False	NA	11	True	AATAAA	-14	NA	73790104	73833582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_73790338_73797880_73798062_73806073_73806174_73806301_73806465_73816795_73816925_73819118_73819258_73828196_73828359_73828449_73828593_73830071_73830193_73831116_73831206_73832813
transcript_1779.known	chr1	+	3015	4	FSM	ENSMUSG00000048000.16	ENSMUST00000174583.8	3015	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	78.7922726047562	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCATTTCCTCGGATTAA	NA	False	NA	NA	False	NA	NA	NA	87254751	87285506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_87254815_87261991_87262057_87282125_87282209_87282702
transcript_178.known	SIRV6	+	531	4	FSM	SIRV6A	SIRV616	531	4	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_2	7304.14215816386	460	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTGAAAAAGTAATAGTGC	NA	False	NA	NA	False	NA	NA	NA	2285	10788	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6_+_2621_2740_2815_3106_3165_10724
transcript_17813.known	chr14	+	1117	9	FSM	ENSMUSG00000021996.17	ENSMUST00000176957.8	1117	9	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	425.971756692859	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTAAATTGTTATTTT	NA	False	NA	13	True	AATAAA	-14	NA	74969823	74987288	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_74969962_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
transcript_17816.known	chr14	+	1988	9	FSM	ENSMUSG00000021996.17	ENSMUST00000022573.17	1988	9	0	0	0	0	multi-exon	FALSE	canonical	3	1089	junction_1	102.16133074701	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTACTACCCCAAATTCTT	NA	False	NA	NA	False	NA	NA	NA	74969736	74988205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_74969829_74973399_74973475_74975868_74975958_74978596_74978696_74979453_74979579_74980658_74980779_74982087_74982187_74982989_74983158_74987084
transcript_17818.known	chr14	-	3125	19	FSM	ENSMUSG00000068015.9	ENSMUST00000228252.2	3125	19	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_17	17.7194355175815	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATCAAGAGAGCACCCCA	569	False	NA	NA	False	AATAAA	-7	NA	75185316	74993612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_74994584_75013020_75013099_75022930_75023069_75023720_75023831_75032736_75032810_75033477_75033532_75041660_75041698_75041800_75041891_75042908_75042993_75044913_75044982_75049039_75049156_75051045_75051152_75054508_75054573_75055931_75056060_75056933_75057071_75064037_75064144_75073088_75073216_75095416_75095562_75184823
transcript_17821.nic	chr14	+	2635	12	ISM	ENSMUSG00000022000.12	ENSMUST00000227049.2	6144	19	-20	16652	-7	5933	5prime_fragment	FALSE	canonical	3	74	junction_1	17.8339447901147	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAGAGAGAAAGAGAGG	NA	False	NA	6	True	NA	NA	NA	75521805	75565214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_+_75522106_75529008_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320_75553519_75559036_75559345_75560663_75561315_75561852_75562045_75564983
transcript_17823.known	chr14	+	6151	19	FSM	ENSMUSG00000022000.12	ENSMUST00000022577.6	6151	19	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	33.0591034510565	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTGTAGATTTTCCTT	NA	False	NA	14	True	AATAAA	-15	NA	75521812	75581866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_75522106_75529011_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320_75553519_75559036_75559345_75560663_75561315_75561852_75562045_75564983_75565585_75567113_75567218_75567508_75568700_75569145_75569659_75573364_75573515_75574809_75575011_75576748_75576913_75581033
transcript_17824.known	chr14	+	6144	19	FSM	ENSMUSG00000022000.12	ENSMUST00000227049.2	6144	19	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	25.8044043517888	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTGTAGATTTTCCTT	NA	False	NA	14	True	AATAAA	-15	NA	75521825	75581866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_75522106_75529008_75529135_75529617_75529728_75531330_75531443_75543228_75543338_75546348_75546489_75547084_75547243_75553320_75553519_75559036_75559345_75560663_75561315_75561852_75562045_75564983_75565585_75567113_75567218_75567508_75568700_75569145_75569659_75573361_75573515_75574809_75575011_75576748_75576913_75581033
transcript_17825.known	chr14	-	3588	10	FSM	ENSMUSG00000022003.8	ENSMUST00000022580.8	3588	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	8.56348838577675	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATATGGCTTACAGTCATT	NA	False	NA	NA	False	AATAAA	-17	NA	76024477	75997556	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_76000131_76000768_76000850_76004342_76004482_76006255_76006381_76007005_76007102_76007610_76007697_76008878_76008974_76012434_76012583_76014435_76014567_76024364
transcript_17827.nic	chr14	-	3425	9	NIC	ENSMUSG00000022003.8	novel	3588	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_8	14.3172754042101	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATATGGCTTACAGTCATT	NA	False	NA	NA	False	AATAAA	-17	NA	76024445	75997556	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_76000131_76000768_76000850_76004342_76004482_76006255_76006381_76007005_76007102_76007610_76007697_76008878_76008974_76012434_76012583_76024364
transcript_1783.known	chr1	+	3942	23	FSM	ENSMUSG00000026288.15	ENSMUST00000170300.8	3942	23	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_20	86.0654661453124	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGCCTCCTGACTGTGT	9370	False	NA	14	True	AATAAA	-15	NA	87603960	87648224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87642816_87642998_87643036_87645411_87646007_87647042
transcript_17830.known	chr14	-	1467	8	FSM	ENSMUSG00000067995.5	ENSMUST00000088922.5	1467	8	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_6	43.0538343595692	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGATGGCAACTGTTATC	NA	False	NA	-17	True	AATAAA	-19	NA	76248305	76134376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_76135094_76144222_76144367_76155073_76155174_76186877_76186960_76232860_76233006_76234348_76234368_76245144_76245219_76248119
transcript_17834.known	chr14	-	5389	8	FSM	ENSMUSG00000022008.5	ENSMUST00000022585.5	5389	8	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	16.688013540214	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGTTGGAATCTTCCTTT	NA	False	NA	-9	True	AATAAA	-17	NA	76348200	76323675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_76328187_76332446_76332546_76335893_76336059_76336499_76336632_76339885_76339992_76343493_76343593_76344760_76344894_76348056
transcript_17837.known	chr14	+	3974	10	FSM	ENSMUSG00000022009.2	ENSMUST00000022586.2	3974	10	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_7	36.4295362461713	266	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTTGCTGTCCGTCCTTG	NA	False	NA	NA	False	NA	NA	NA	76348330	76374819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_76348767_76349363_76349438_76351614_76351714_76352417_76352481_76353223_76353301_76361925_76362019_76363577_76363772_76368252_76368370_76370411_76370639_76372225
transcript_17841.known	chr14	-	855	1	FSM	ENSMUSG00000095427.3	ENSMUST00000095471.6	855	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGTTTTTATATGAGAA	NA	False	NA	NA	False	NA	NA	NA	76474985	76474130	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_76474100_76475000
transcript_17842.known	chr14	+	797	3	FSM	ENSMUSG00000022010.20	ENSMUST00000142683.8	797	3	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	1130	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTGCTTCTGAGAGCTC	3103	False	NA	106	True	NA	NA	NA	76725198	76744438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_76725365_76742688_76742738_76743856
transcript_17843.known	chr14	+	1043	3	FSM	ENSMUSG00000022010.20	ENSMUST00000101618.9	1043	3	0	0	0	0	multi-exon	FALSE	canonical	2	49	junction_1	1143	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACAAAACCGACAACTGTC	3780	False	NA	NA	False	NA	NA	NA	76725875	76744610	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_76726116_76742688_76742738_76743856
transcript_17844.known	chr14	+	1476	3	FSM	ENSMUSG00000022010.20	ENSMUST00000177207.2	1476	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	1157	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACGTGTTTCTATATGAC	6275	False	NA	29	True	AATAAA	-19	NA	76741653	76745203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_76741734_76742688_76742738_76743856
transcript_17845.known	chr14	+	1762	3	FSM	ENSMUSG00000022010.20	ENSMUST00000022587.10	1762	3	0	0	0	0	multi-exon	FALSE	canonical	3	2255	junction_1	40	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGTGTTTCTATATGACGC	6539	False	NA	31	True	AATAAA	-21	NA	76741917	76745205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_76742282_76742688_76742738_76743856
transcript_17852.known	chr14	-	865	5	FSM	ENSMUSG00000052584.11	ENSMUST00000227076.2	865	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	35.7587401903367	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATACCATGTGCGAGTTA	NA	False	NA	-4	True	AATAAA	-16	NA	76794298	76770255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_76770687_76777345_76777495_76787421_76787495_76793870_76793989_76794204
transcript_17853.nic	chr14	-	812	4	NIC	ENSMUSG00000052584.11	novel	865	5	NA	NA	-63	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	9.8770215933527	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACCATGTGCGAGTTACC	NA	False	NA	-2	True	AATAAA	-18	NA	76794392	76770253	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_76770687_76787421_76787495_76793870_76793989_76794204
transcript_17854.nic	chr14	-	886	4	NIC	ENSMUSG00000052584.11	novel	865	5	NA	NA	-63	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_2	42.5754232705521	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATACCATGTGCGAGTTA	NA	False	NA	-4	True	AATAAA	-16	NA	76794392	76770255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_76770687_76777345_76777495_76793870_76793989_76794204
transcript_17855.nic	chr14	-	677	2	ISM	ENSMUSG00000052584.11	ENSMUST00000227076.2	865	5	16707	0	16341	0	3prime_fragment	FALSE	canonical	3	106	junction_1	0	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATACCATGTGCGAGTTA	NA	False	NA	-4	True	AATAAA	-16	NA	76777591	76770255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_76770687_76777345
transcript_17856.nnic	chr14	+	805	3	NIC	ENSMUSG00000101009.7	novel	857	5	NA	NA	391	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	3	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCCTTCACGAGTGTGT	NA	False	NA	NA	False	AATAAA	-31	NA	76915484	76924548	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_76915820_76917565_76917761_76924273
transcript_17857.nnic	chr14	+	793	3	NNC	ENSMUSG00000101009.7	novel	1412	4	NA	NA	391	-1	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	7	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGCCTTCACGAGTGTG	NA	False	NA	NA	False	AATAAA	-30	NA	76915484	76924547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_76915820_76919165_76919350_76924273
transcript_17859.nnic	chr14	+	648	2	NIC	ENSMUSG00000101009.7	novel	1412	4	NA	NA	352	-1	combination_of_known_splicesites	FALSE	canonical	2	7	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTGCCTTCACGAGTGTG	NA	False	NA	NA	False	AATAAA	-30	NA	76915445	76924547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_76915820_76924273
transcript_1786.known	chr1	+	4125	22	FSM	ENSMUSG00000026288.15	ENSMUST00000167032.2	4125	22	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_4	52.3837661581916	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGGCCTCCTGACTGTGT	9370	False	NA	14	True	AATAAA	-15	NA	87603960	87648224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070_87625268_87625834_87625953_87626749_87626847_87627361_87627501_87628881_87628991_87629136_87629226_87630839_87630922_87633655_87633746_87635817_87635932_87637339_87637423_87638786_87638875_87639752_87639903_87640914_87641012_87642759_87643036_87645411_87646007_87647042
transcript_17860.known	chr14	+	2252	1	FSM	ENSMUSG00000101009.7	ENSMUST00000185809.2	2252	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAGAAGAAGAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	76915018	76917270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_76915000_76917300
transcript_17862.known	chr14	-	2444	8	FSM	ENSMUSG00000044350.15	ENSMUST00000062789.15	2444	8	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	13.9737362978714	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTATCCATTCCTTT	NA	False	NA	1	True	NA	NA	NA	77274081	77261639	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_77262415_77266967_77267129_77268176_77268403_77270625_77270792_77271444_77271624_77272232_77272846_77273251_77273431_77273936
transcript_17864.known	chr14	-	468	1	FSM	ENSMUSG00000063556.6	ENSMUST00000099431.6	468	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1214	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCCAGATGGCT	NA	False	NA	NA	False	NA	NA	NA	77489754	77489286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_77489300_77489800
transcript_17868.known	chr14	-	6193	6	FSM	ENSMUSG00000022013.5	ENSMUST00000226459.2	6193	6	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_3	59.8618409339372	434	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACACTCAATGTTTCTGT	NA	False	NA	2	True	AATAAA	-22	NA	78112366	78058120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_78063911_78077607_78077679_78081835_78081913_78090337_78090412_78094378_78094431_78112237
transcript_17869.known	chr14	-	674	5	FSM	ENSMUSG00000022013.5	ENSMUST00000022590.5	674	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	265.32856989024	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGTCCTTCAGAAGAATG	NA	False	NA	-139	True	NA	NA	NA	78112565	78063786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_78063911_78077607_78077679_78081835_78081913_78090337_78090412_78112237
transcript_17872.known	chr14	+	3406	26	FSM	ENSMUSG00000058997.9	ENSMUST00000227255.2	3406	26	0	0	0	0	multi-exon	FALSE	canonical	2	39	junction_16	9.45524193238862	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCAGTCTCCGTCCTTTTG	9408	False	NA	3	True	AATAAA	-19	NA	79086693	79302708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_79086884_79106218_79106297_79145562_79145694_79149608_79149720_79162701_79162870_79171105_79171271_79172033_79172084_79172622_79172732_79174544_79174650_79184580_79184713_79186723_79186859_79186939_79187018_79219675_79219837_79221628_79221743_79231839_79232009_79232525_79232604_79246603_79246720_79256046_79256154_79258019_79258127_79263445_79263518_79275564_79275642_79294086_79294163_79296112_79296249_79297968_79298089_79299923_79300130_79302293
transcript_17873.known	chr14	+	7054	45	FSM	ENSMUSG00000058997.9	ENSMUST00000040990.7	7054	45	0	0	0	0	multi-exon	FALSE	canonical	2	24	junction_28	13.7905487757808	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTATGTGTGTGTGGTTT	9206	False	NA	26	True	AATAAA	-35	NA	79086491	79439750	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_79086884_79106218_79106297_79145562_79145694_79149608_79149720_79162701_79162870_79171105_79171271_79172033_79172084_79172622_79172732_79174544_79174650_79184580_79184713_79186723_79186859_79186939_79187018_79219675_79219837_79221628_79221743_79231839_79232009_79232525_79232604_79246603_79246720_79256046_79256154_79258019_79258127_79263445_79263518_79275564_79275642_79294086_79294163_79296112_79296249_79297968_79298089_79299923_79300130_79302293_79302446_79318552_79318662_79320212_79320352_79324059_79324260_79329730_79329842_79331165_79331231_79331637_79331764_79333111_79333222_79333824_79333980_79335673_79335870_79339675_79339758_79340931_79341137_79394511_79394621_79397404_79397562_79401543_79401653_79418180_79418307_79420412_79420572_79434851_79434951_79435661_79435901_79438537
transcript_17876.known	chr14	-	918	5	FSM	ENSMUSG00000022018.8	ENSMUST00000022595.8	918	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	11.7046999107196	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTACTTTGAAAGCTGCC	NA	False	NA	-11	True	AATAAA	-14	NA	79539085	79526195	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_79526560_79527683_79527747_79529110_79529219_79538154_79538341_79538888
transcript_17877.known	chr14	-	13223	20	FSM	ENSMUSG00000022020.16	ENSMUST00000022597.15	13223	20	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_14	26.2237337258888	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGGTGTGATACTTGTA	NA	False	NA	NA	False	NA	NA	NA	79628218	79562708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_79573372_79573827_79573926_79576973_79577118_79577477_79577577_79578426_79578536_79580565_79580760_79582334_79582549_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619070_79620675_79620834_79622093_79622199_79624461_79624547_79628001
transcript_17883.nic	chr14	-	2007	14	NIC	ENSMUSG00000022020.16	novel	2154	16	NA	NA	-11	-9560	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	42.6480019579572	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGTTTTTTTTTTCTT	NA	False	NA	NA	False	TATAAA	-14	NA	79628229	79587976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_79588271_79588812_79588942_79593160_79593314_79593806_79593977_79596895_79596969_79606517_79606625_79607441_79607538_79612175_79612296_79614807_79614962_79618934_79619070_79620675_79620834_79622093_79622199_79624461_79624547_79628001
transcript_17884.known	chr14	+	1799	11	FSM	ENSMUSG00000022022.4	ENSMUST00000022600.4	1799	11	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_10	10.5683489722851	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAGATGTGCCTACAGAGT	NA	False	NA	1	True	AATAAA	-12	NA	79635211	79661027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_79635477_79637131_79637240_79638861_79639288_79640264_79640357_79644016_79644099_79644285_79644394_79649081_79649255_79650426_79650545_79653317_79653455_79656627_79656727_79660836
transcript_17886.nic	chr14	+	876	3	ISM	ENSMUSG00000022022.4	ENSMUST00000227610.2	2008	10	-233	17995	-19	-17995	5prime_fragment	FALSE	canonical	3	90	junction_2	9.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGTTTGTTTGTTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	79635192	79639345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_+_79635477_79637131_79637240_79638861
transcript_17887.known	chr14	-	3704	10	FSM	ENSMUSG00000022023.7	ENSMUST00000022601.7	3704	10	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_1	16.1780219761789	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCTGTGTTTGTTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	79718960	79697376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_79699570_79703622_79703790_79704712_79704904_79707544_79707621_79708126_79708174_79709791_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
transcript_17896.nnic	chr14	-	1316	8	NIC	ENSMUSG00000022023.7	novel	3704	10	NA	NA	-102	-94	combination_of_known_splicesites	FALSE	canonical	3	39	junction_3	112.21899144448	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTTGTTCCTTAAGT	NA	False	NA	-3	True	AATAAA	-18	NA	79718504	79699185	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_79699570_79703622_79703790_79704712_79704904_79709791_79709966_79714242_79714373_79714481_79714545_79717812_79717886_79718370
transcript_179.known	SIRV6	+	545	4	FSM	SIRV6A	SIRV606	545	4	0	0	0	0	multi-exon	FALSE	canonical	3	12902	junction_1	3352.72986617705	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTTGAAAAAGTAATAGTGC	NA	False	NA	NA	False	NA	NA	NA	2285	10788	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6_+_2621_2740_2829_3106_3165_10724
transcript_17903.known	chr14	+	7392	13	FSM	ENSMUSG00000022024.11	ENSMUST00000054908.10	7392	13	0	0	0	0	multi-exon	FALSE	canonical	3	1684	junction_8	86.763527603609	1070	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTGAGTGGATTGAATAA	NA	False	NA	NA	False	AATAAA	-18	NA	79825130	79872636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_79825307_79825393_79825452_79832808_79832900_79834187_79834258_79834835_79834907_79840286_79840341_79840909_79840927_79844685_79844718_79846395_79846493_79847679_79847788_79857148_79857240_79862280_79862463_79866291
transcript_17908.known	chr14	-	4582	28	FSM	ENSMUSG00000022021.15	ENSMUST00000022599.14	4582	28	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	42.6759570646689	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGACGTATGTCTCTTCT	NA	False	NA	NA	False	AATAAA	-24	NA	87378660	86892802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_86894019_87009521_87009582_87010042_87010139_87047771_87047908_87066427_87066591_87072410_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
transcript_1791.nic	chr1	+	1146	7	ISM	ENSMUSG00000026288.15	ENSMUST00000170300.8	3942	23	23	22604	23	-14261	5prime_fragment	FALSE	canonical	3	377	junction_4	66.3335427132374	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAATATTTACTTCCTAG	9393	False	NA	NA	False	NA	NA	NA	87603983	87625620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_87604093_87609210_87609292_87609408_87609481_87611464_87611589_87619346_87619454_87623054_87623158_87625070
transcript_17911.nic	chr14	-	2260	5	ISM	ENSMUSG00000022021.15	ENSMUST00000227666.2	3337	27	-68	263822	-3	39856	5prime_fragment	FALSE	canonical	3	183	junction_1	18.2002747232013	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTTTAATTGTATTTTA	NA	False	NA	NA	False	NA	NA	NA	87378674	87273318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
transcript_17914.known	chr14	-	3337	27	FSM	ENSMUSG00000022021.15	ENSMUST00000227666.2	3337	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	43.0116951207432	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTATTCTTACCTGCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	87378606	87009496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_87009582_87010042_87010139_87047771_87047908_87066427_87066593_87072412_87072538_87089507_87089638_87103838_87104079_87143372_87143475_87147464_87147560_87156204_87156301_87202877_87202993_87203760_87204070_87206884_87206990_87216049_87216115_87219006_87219126_87222217_87222335_87223055_87223175_87223450_87223562_87237444_87237551_87240237_87240375_87244610_87244681_87244761_87244837_87274891_87275023_87310717_87310823_87328413_87328591_87352449_87352483_87378433
transcript_17915.known	chr14	-	558	4	FSM	ENSMUSG00000022021.15	ENSMUST00000226134.2	558	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	101.600524933027	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTATGTGAGTTCACTTATT	NA	False	NA	NA	False	ATTAAA	-18	NA	87378579	87313174	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_87313377_87328413_87328591_87352449_87352483_87378433
transcript_17916.known	chr14	+	2657	14	FSM	ENSMUSG00000022019.17	ENSMUST00000168275.9	2657	14	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_12	16.6232175269033	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTCTGGTTCACTTGTC	NA	False	NA	7	True	AATAAA	-21	NA	87654074	87782940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_87654285_87694469_87694555_87696192_87696259_87709511_87709673_87712134_87712277_87714825_87714898_87718169_87718320_87722994_87723136_87723627_87723785_87724597_87724724_87743194_87744043_87749080_87749207_87776832_87776958_87782692
transcript_17917.known	chr14	-	792	1	FSM	ENSMUSG00000062611.5	ENSMUST00000074245.5	792	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	724	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATCCAGATTTTTAATA	NA	False	NA	NA	False	NA	NA	NA	88361244	88360452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_88360500_88361200
transcript_17918.known	chr14	-	449	1	FSM	ENSMUSG00000060377.5	ENSMUST00000081987.5	449	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	195	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTTTATTTACATGTAT	NA	False	NA	-1	True	ATTAAA	-27	NA	99231754	99231305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_99231300_99231800
transcript_17922.nnic	chr14	-	2526	5	NNC	ENSMUSG00000033186.10	novel	2240	3	NA	NA	-20	344	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	408.61740968784	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGGAGAGTCATAAAATTT	NA	False	NA	NA	False	GATAAA	-43	NA	99283590	99271635	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_99271664_99271701_99271753_99271806_99273947_99277950_99278097_99283429
transcript_17924.nnic	chr14	-	2504	4	NNC	ENSMUSG00000033186.10	novel	2240	3	NA	NA	-20	284	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	385.421270242777	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTGACAATTCAGATAAATA	NA	False	NA	NA	False	GATAAA	-2	NA	99283590	99271695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_99271753_99271806_99273947_99277950_99278097_99283429
transcript_17925.known	chr14	-	2240	3	FSM	ENSMUSG00000033186.10	ENSMUST00000042662.10	2240	3	0	0	0	0	multi-exon	FALSE	canonical	3	792	junction_1	24.5	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGTCCTTTTGATATAC	NA	False	NA	NA	False	AATAAA	-18	NA	99283556	99271979	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_99273947_99277950_99278097_99283429
transcript_17926.known	chr14	-	952	3	FSM	ENSMUSG00000033186.10	ENSMUST00000227948.2	952	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	387	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCATTTCTCTGTAAAT	NA	False	NA	NA	False	ATTAAA	-19	NA	99283529	99273221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_99273947_99277950_99278097_99283448
transcript_1793.known	chr1	+	3130	18	FSM	ENSMUSG00000026289.16	ENSMUST00000027512.13	3130	18	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_7	58.4556141318301	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCGTCTTGATTGTCTTT	7245	False	NA	23	True	AATAAA	-32	NA	87683734	87720150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_87684037_87687772_87687867_87693059_87693166_87693830_87693905_87694527_87694780_87699113_87699180_87701866_87701954_87702534_87702592_87703478_87703582_87706643_87706750_87707846_87707918_87709392_87709465_87713597_87713719_87713962_87714069_87717052_87717203_87717293_87717342_87718307_87718410_87718937
transcript_17930.known	chr14	-	818	2	FSM	ENSMUSG00000033186.10	ENSMUST00000228445.2	818	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCATTATTTGTAGTTTG	NA	False	NA	NA	False	AAAAAG	-18	NA	99283570	99273269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_99273947_99283429
transcript_17936.known	chr14	+	2726	12	FSM	ENSMUSG00000022070.8	ENSMUST00000022656.8	2726	12	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_1	51.3357124417381	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTTTTCCTTGTTCTGT	NA	False	NA	5	True	AATAAA	-16	NA	99283812	99311976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291000_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310185_99311081
transcript_17939.nnic	chr14	+	2733	12	NNC	ENSMUSG00000022070.8	novel	2726	12	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_11	93.6248006982398	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTTTTCCTTGTTCTGT	NA	False	NA	5	True	AATAAA	-16	NA	99283832	99311976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_99284117_99284736_99284905_99287428_99287536_99290953_99291000_99294174_99294257_99297675_99297742_99298410_99298468_99298955_99299120_99299704_99299841_99305443_99305998_99310037_99310212_99311081
transcript_1794.known	chr1	+	3004	17	FSM	ENSMUSG00000026289.16	ENSMUST00000113186.8	3004	17	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_8	19.4867743610891	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCCTTGCGTCTTGATT	7308	False	NA	17	True	AATAAA	-26	NA	87683797	87720144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_87684037_87687772_87687867_87693059_87693166_87693830_87693905_87694527_87694780_87699113_87699180_87701866_87701954_87703478_87703582_87706643_87706750_87707846_87707918_87709392_87709465_87713597_87713719_87713962_87714069_87717052_87717203_87717293_87717342_87718307_87718410_87718937
transcript_17945.known	chr14	+	1071	2	FSM	ENSMUSG00000022070.8	ENSMUST00000226823.2	1071	2	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACT	NA	False	NA	NA	False	AATAAA	-44	NA	99283657	99285348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_99284117_99284736
transcript_17948.known	chr14	+	2797	18	FSM	ENSMUSG00000022064.11	ENSMUST00000022650.9	2797	18	0	0	0	0	multi-exon	FALSE	canonical	2	66	junction_8	18.7005171736119	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGACTGTAGAGTTTTTA	NA	False	NA	15	True	AATAAA	-17	NA	99337342	99491929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671_99370806_99373888_99373998_99374477_99374660_99377972_99378099_99388078_99388178_99416750_99416917_99423916_99424068_99425153_99425245_99433784_99433888_99448375_99448507_99458994_99459080_99480274_99480446_99491596
transcript_1795.nic	chr1	+	720	4	ISM	ENSMUSG00000070738.11	ENSMUST00000027517.14	5695	30	0	29033	0	-287	5prime_fragment	FALSE	canonical	3	363	junction_2	19.7033556081755	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATCTTTTCCCTCTTTG	4070	False	NA	NA	False	ATTAAA	-17	NA	87781008	87843179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_87781179_87808089_87808201_87809580_87809662_87842821
transcript_17954.nic	chr14	+	1607	6	ISM	ENSMUSG00000022064.11	ENSMUST00000228354.2	2653	11	-60	46535	-22	19687	5prime_fragment	FALSE	canonical	3	99	junction_3	7.30479294709987	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTATAATTTTTTATTA	NA	False	NA	NA	False	AATAAA	-19	NA	99337320	99371340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405_99350526_99370671
transcript_17955.known	chr14	+	1993	5	FSM	ENSMUSG00000022064.11	ENSMUST00000228279.2	1993	5	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	8.15475321515004	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAGGTATGGCCCACGTC	NA	False	NA	NA	False	AATAAA	-15	NA	99337393	99351653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_99337566_99338464_99338738_99342604_99342706_99344734_99344934_99350405
transcript_17956.known	chr14	-	5150	21	FSM	ENSMUSG00000033166.12	ENSMUST00000042471.11	5150	21	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_13	28.371596712205	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCATCTATGCTGAATGT	2527	False	NA	NA	False	NA	NA	NA	99337206	99312641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_99314902_99315697_99315821_99316563_99316723_99316823_99316993_99317100_99317316_99318661_99318819_99320085_99320173_99321462_99321591_99323309_99323395_99323482_99323548_99324824_99324927_99325169_99325287_99326197_99326345_99327053_99327192_99327400_99327515_99328763_99328929_99332608_99332777_99334192_99334267_99335020_99335215_99336118_99336277_99336881
transcript_17957.nnic	chr14	+	1258	4	NNC	ENSMUSG00000005148.9	novel	3352	4	NA	NA	-31	-1603	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	1681.58701496202	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GGAAAAAAAAAAAAAGCAAA	NA	False	NA	NA	False	TTTAAA	-45	NA	99536095	99550869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_99536137_99538816_99539691_99540853_99540914_99550586
transcript_17958.known	chr14	+	3352	4	FSM	ENSMUSG00000005148.9	ENSMUST00000005279.8	3352	4	0	0	0	0	multi-exon	FALSE	canonical	3	3464	junction_1	114.952163963972	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGTGCCTTCTTGACCC	NA	False	NA	22	True	AATAAA	-18	NA	99536126	99552472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_99536659_99538816_99539691_99540853_99540914_99550586
transcript_1796.known	chr1	-	1051	1	FSM	ENSMUSG00000081984.4	ENSMUST00000119972.4	1051	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCACTGTTATGTTCTAG	NA	False	NA	NA	False	ATTAAA	-15	NA	88133504	88132453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_88132500_88133500
transcript_17963.known	chr14	-	1090	4	FSM	ENSMUSG00000075486.11	ENSMUST00000100339.9	1090	4	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_3	9.8770215933527	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATGACGTGTCTTGTG	NA	False	NA	NA	False	ATTAAA	-18	NA	101878122	101871201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_101871829_101874389_101874543_101877723_101877736_101877824
transcript_17969.known	chr14	-	519	3	FSM	ENSMUSG00000075486.11	ENSMUST00000168587.3	519	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	193.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAATAAAAATAATTAAAAG	NA	False	NA	-23	True	NA	NA	NA	101877893	101871531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_101871829_101874389_101874543_101877824
transcript_1797.nnic	chr1	-	4172	9	NNC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	17	-638	at_least_one_novel_splicesite	FALSE	non_canonical	3	150	junction_1	84.2673387202895	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGTCTGCCCTGCGGAC	8608	False	NA	-15	True	AATAAA	-23	NA	88205338	88190830	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_88194001_88194051_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
transcript_17979.known	chr14	+	903	9	FSM	ENSMUSG00000022111.10	ENSMUST00000002289.8	903	9	0	0	0	0	multi-exon	FALSE	canonical	3	3225	junction_5	471.372729376658	1510	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTTGTTTTTGCTAC	117	False	NA	22	True	AATAAA	-18	NA	101891429	101933561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_101891542_101891643_101891656_101903196_101903326_101903947_101904105_101904427_101904514_101905964_101906013_101928007_101928084_101932594_101932654_101933337
transcript_1798.nnic	chr1	-	2769	9	NNC	ENSMUSG00000044783.17	novel	4878	8	NA	NA	17	316	at_least_one_novel_splicesite	FALSE	non_canonical	3	150	junction_1	84.2673387202895	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTATTTCCCTGGTTGAA	8608	False	NA	NA	False	GATAAA	-13	NA	88205338	88192233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_88194001_88194051_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
transcript_1799.known	chr1	-	4878	8	FSM	ENSMUSG00000044783.17	ENSMUST00000054674.15	4878	8	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_7	57.9852197916479	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGGGTGCAGGTTTGGC	8591	False	NA	NA	False	AATAAA	-24	NA	88205355	88190192	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_88194381_88195669_88195749_88197042_88197136_88197923_88198022_88200450_88200488_88202763_88202820_88204940_88205008_88205095
transcript_17992.known	chr14	+	2445	4	FSM	ENSMUSG00000022125.8	ENSMUST00000022721.8	2445	4	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	4.96655480858378	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTGCATCTTGTATCTT	NA	False	NA	6	True	NA	NA	NA	103307651	103315064	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_103307904_103309069_103309236_103310622_103310849_103313263
transcript_17993.nic	chr14	+	392	2	ISM	ENSMUSG00000022125.8	ENSMUST00000022721.8	2445	4	88	5767	88	-1435	5prime_fragment	FALSE	canonical	3	258	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTAGTCAAATGGTTACT	NA	False	NA	NA	False	NA	NA	NA	103307739	103309297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_+_103307904_103309069
transcript_17994.known	chr14	-	3352	5	FSM	ENSMUSG00000022124.16	ENSMUST00000145693.8	3352	5	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_4	32.5451609306207	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGTTGTATTTTTATAAC	9922	False	NA	-4	True	AATAAA	-13	NA	103336435	103318469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_103320947_103326737_103326910_103329739_103329863_103332628_103332978_103336204
transcript_17998.known	chr14	-	344	2	FSM	ENSMUSG00000033004.17	ENSMUST00000162852.2	344	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACACGTTTTAGAACTTTC	NA	False	NA	NA	False	NA	NA	NA	103352832	103351568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_103351672_103352591
transcript_17999.nnic	chr14	+	1422	3	NNC	ENSMUSG00000055717.14	novel	2863	7	NA	NA	35014	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	23.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATTTGCACTAATGAATG	NA	False	NA	-78	True	AATAAA	-27	NA	103936947	103942238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_103937081_103939952_103940275_103941271
transcript_18.known	ERCC-00053	+	1007	1	FSM	ERCC-00053A	DQ516785	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00053_+_0_1000
transcript_180.known	SIRV6	+	1163	5	FSM	SIRV6A	SIRV610	1163	5	0	0	0	0	multi-exon	FALSE	canonical	3	12902	junction_1	2966.72052736688	957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTAAAATGGGGTTTGCC	NA	False	NA	NA	False	ATTAAA	-5	NA	2472	11690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6_+_2621_2740_2829_3106_3165_10724_11109_11205
transcript_18001.nnic	chr14	-	3460	7	NNC	ENSMUSG00000022120.5	novel	3420	6	NA	NA	-59	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	34.5333976833377	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTTTTGATGTCATCAT	NA	False	NA	-1	True	AATAAA	-18	NA	104760140	104714971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_-_104715562_104715593_104717734_104740782_104740872_104743528_104743778_104745374_104745467_104747737_104747874_104759976
transcript_18002.known	chr14	-	3420	6	FSM	ENSMUSG00000022120.5	ENSMUST00000022716.4	3420	6	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	11.8490505948789	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTTTTGATGTCATCAT	NA	False	NA	-1	True	AATAAA	-18	NA	104760068	104714971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_104717734_104740782_104740872_104743528_104743778_104745374_104745467_104747737_104747874_104759976
transcript_18003.nic	chr14	-	1746	9	ISM	ENSMUSG00000091509.8_ENSMUSG00000022119.16	ENSMUST00000163545.8	3270	22	37722	-500	-8801	500	3prime_fragment	FALSE	canonical	3	77	junction_8	52.6444441513062	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAAATGAAACAGACCAT	NA	False	NA	NA	False	NA	NA	NA	105376574	105351900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_105352723_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105376526
transcript_18004.nic	chr14	-	1670	9	ISM	ENSMUSG00000091509.8_ENSMUSG00000022119.16	ENSMUST00000163545.8	3270	22	37722	-424	-8801	424	3prime_fragment	FALSE	canonical	3	77	junction_8	52.6444441513062	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCATGACAATGTTCCTTGA	NA	False	NA	NA	False	NA	NA	NA	105376574	105351976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_105352723_105354421_105354536_105358417_105358505_105362018_105362220_105366000_105366106_105367668_105367837_105368918_105368994_105369317_105369444_105376526
transcript_18006.known	chr14	+	2532	8	FSM	ENSMUSG00000053253.17	ENSMUST00000181969.8	2532	8	0	0	0	0	multi-exon	TRUE	canonical	3	271	junction_7	54.1807255433901	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGTATTTCTTGTATT	NA	False	NA	10	True	AATAAA	-17	NA	105496007	105546732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545319
transcript_18009.known	chr14	+	1695	8	FSM	ENSMUSG00000053253.17	ENSMUST00000138283.2	1695	8	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_7	99.9552961302691	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGCCTCGTTTAGTGATT	NA	False	NA	6	True	AATAAA	-16	NA	105496187	105546305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_105496438_105525050_105525214_105529665_105529800_105532232_105532327_105535436_105535562_105539732_105539800_105542164_105542271_105545549
transcript_18016.known	chr14	+	384	1	FSM	ENSMUSG00000060143.8	ENSMUST00000073238.7	384	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	232	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	AATAAA	-21	NA	105919261	105919645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_105919300_105919600
transcript_18017.known	chr14	+	2147	1	FSM	ENSMUSG00000058126.8	ENSMUST00000072359.8	2147	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	515	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTTGCAGACTCAGT	NA	False	NA	NA	False	NA	NA	NA	113552039	113554186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_113552000_113554200
transcript_18018.known	chr14	-	1682	12	FSM	ENSMUSG00000022130.11	ENSMUST00000022727.10	1682	12	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_8	15.4084875183551	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTAATGTCTTTTTATTT	250	False	NA	-4	True	ATTAAA	-20	NA	118370159	118349887	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_118350570_118351724_118351823_118352528_118352588_118353490_118353657_118354381_118354426_118355148_118355209_118357051_118357151_118359130_118359274_118364906_118364998_118365634_118365704_118368018_118368086_118370055
transcript_18019.known	chr14	-	2153	11	FSM	ENSMUSG00000022130.11	ENSMUST00000227350.2	2153	11	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_8	55.2185657184248	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTCATCATGATGCCCAGC	253	False	NA	NA	False	NA	NA	NA	118370156	118349322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_118350570_118351724_118351823_118352528_118352588_118353490_118353657_118354381_118354426_118355148_118355209_118357051_118357151_118359130_118359274_118365634_118365704_118368018_118368086_118370055
transcript_1802.nic	chr1	-	609	3	ISM	ENSMUSG00000044783.17	ENSMUST00000147393.2	2030	5	-23	9734	-23	0	5prime_fragment	FALSE	canonical	3	259	junction_2	28.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGCCTCTTTTCTTCCTC	8695	False	NA	NA	False	AAGAAA	-10	NA	88205251	88202433	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_88202820_88204940_88205008_88205095
transcript_18022.nic	chr14	-	716	5	ISM	ENSMUSG00000022130.11	ENSMUST00000022727.10	1682	12	0	9001	0	8948	5prime_fragment	FALSE	canonical	3	141	junction_1	23.054283766797	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGCCTCAAAAAATTT	250	False	NA	NA	False	TTTAAA	-4	NA	118370159	118358888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_-_118359274_118364906_118364998_118365634_118365704_118368018_118368086_118370055
transcript_18024.known	chr14	+	1875	9	FSM	ENSMUSG00000022131.4	ENSMUST00000022728.4	1875	9	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_5	22.6463987203264	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATTAGCATTTGTTTATT	NA	False	NA	5	True	AATAAA	-24	NA	118374569	118400673	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_118374753_118377148_118377308_118385496_118385698_118390980_118391162_118391288_118391339_118395308_118395467_118397404_118397597_118398968_118399047_118400000
transcript_18026.nnic	chr14	+	1854	9	NNC	ENSMUSG00000022131.4	novel	1875	9	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	53.8678939629164	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAATTAGCATTTGTTTATT	NA	False	NA	5	True	AATAAA	-24	NA	118374565	118400673	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_118374753_118377173_118377308_118385496_118385698_118390980_118391162_118391288_118391339_118395308_118395467_118397404_118397597_118398968_118399047_118400000
transcript_18027.known	chr14	+	2322	2	FSM	ENSMUSG00000090534.2	ENSMUST00000164755.2	2322	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTATGTAACATTGCC	NA	False	NA	NA	False	CATAAA	-22	NA	118473643	118476171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_118474357_118474562
transcript_18029.known	chr14	+	5141	12	FSM	ENSMUSG00000022136.9	ENSMUST00000022734.9	5141	12	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_10	14.8340684499182	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTACTTGCTTCTTATT	2329	False	NA	15	True	AATAAA	-17	NA	119175387	119219109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_119175583_119190520_119190632_119195279_119195405_119198197_119198273_119205400_119205554_119207511_119207694_119208094_119208215_119209774_119209881_119210104_119210226_119212543_119212677_119214121_119214271_119215438
transcript_18033.known	chr14	+	4518	26	FSM	ENSMUSG00000030662.11	ENSMUST00000032898.9	4518	26	0	0	0	0	multi-exon	TRUE	canonical	3	890	junction_17	126.92017018583	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTGCATTACTTCATTA	1831	False	NA	16	True	ATTAAA	-17	NA	121148635	121185411	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_121148756_121154767_121154849_121157334_121157528_121159537_121159641_121160451_121160549_121160892_121160998_121163612_121163736_121163824_121163946_121165869_121165958_121166712_121166820_121170255_121170381_121170462_121170553_121170641_121170816_121172440_121172660_121173833_121173918_121175976_121176110_121176187_121176310_121176871_121176969_121178233_121178407_121179043_121179156_121179241_121179298_121180060_121180184_121181091_121181312_121181744_121181974_121183488_121183631_121184130
transcript_1804.known	chr1	-	2780	2	FSM	ENSMUSG00000044783.17	ENSMUST00000126739.2	2780	2	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATGCCTCTTTTCTTCCTC	8645	False	NA	NA	False	AAGAAA	-10	NA	88205301	88202433	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_88205008_88205095
transcript_18049.known	chr14	-	2676	11	FSM	ENSMUSG00000063410.9	ENSMUST00000079817.8	2676	11	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_7	30.6098023515344	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCATTTTGCATACTATTC	7303	False	NA	-11	True	AATAAA	-12	NA	121616746	121523754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_121524777_121529391_121529529_121530832_121530902_121531601_121531726_121532066_121532213_121534546_121534733_121539597_121539756_121540158_121540268_121545426_121545484_121574833_121575065_121616309
transcript_18050.known	chr14	-	3121	23	FSM	ENSMUSG00000025557.11	ENSMUST00000088386.8	3121	23	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	5.65119017669934	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATATGTGTTTGTGTGT	3138	False	NA	-6	True	AATAAA	-12	NA	121742664	121697032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_121698186_121699878_121699987_121702314_121702459_121703293_121703403_121703531_121703640_121708689_121708740_121710417_121710568_121711957_121712078_121713376_121713459_121715470_121715560_121715642_121715676_121715803_121715849_121717380_121717471_121718067_121718155_121719158_121719242_121722259_121722344_121724048_121724140_121724405_121724506_121727201_121727322_121728404_121728547_121728640_121728723_121729085_121729103_121742630
transcript_18053.known	chr14	+	2139	9	FSM	ENSMUSG00000041765.7	ENSMUST00000039803.7	2139	9	0	0	0	0	multi-exon	FALSE	canonical	3	342	junction_2	40.200862863874	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTCAGTAGTTTTTATA	8886	False	NA	16	True	AATAAA	-16	NA	122116031	122258446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
transcript_18056.nnic	chr14	+	1303	8	NIC	ENSMUSG00000041765.7	novel	2139	9	NA	NA	-11	-799	combination_of_known_splicesites	FALSE	canonical	3	29	junction_5	124.704057836208	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTTATTTTTTTACTGG	8875	False	NA	19	True	ATTAAA	-16	NA	122116020	122257647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122231636_122231883_122246202_122246326_122257361
transcript_18057.nnic	chr14	+	2172	8	NIC	ENSMUSG00000041765.7	novel	2139	9	NA	NA	-81	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_5	124.704057836208	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTCAGTAGTTTTTATA	8805	False	NA	16	True	AATAAA	-16	NA	122115950	122258446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_122116187_122142534_122142663_122144702_122144823_122145622_122145733_122211020_122211145_122231636_122231883_122246202_122246326_122257361
transcript_18059.nic	chr14	+	948	6	NIC	ENSMUSG00000041765.7	novel	688	5	NA	NA	32	-799	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	151.832275883621	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTTATTTTTTTACTGG	2042	False	NA	19	True	ATTAAA	-16	NA	122183757	122257647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_122183879_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
transcript_18060.nic	chr14	+	1747	6	NIC	ENSMUSG00000041765.7	novel	688	5	NA	NA	32	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	151.832275883621	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTCAGTAGTTTTTATA	2042	False	NA	16	True	AATAAA	-16	NA	122183757	122258446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_122183879_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
transcript_18062.nnic	chr14	+	1762	6	NNC	ENSMUSG00000041765.7	novel	688	5	NA	NA	59	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	167.24281748404	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTTCAGTAGTTTTTATA	2069	False	NA	16	True	AATAAA	-16	NA	122183784	122258446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_122183921_122211020_122211145_122220679_122220728_122231636_122231883_122246202_122246326_122257361
transcript_18065.known	chr14	-	416	2	FSM	ENSMUSG00000102112.2	ENSMUST00000187773.2	416	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTGTTTTAAAATATTTAC	NA	False	NA	NA	False	AATAAA	-14	NA	122115916	122114222	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_122114424_122115701
transcript_18066.known	chr14	+	913	2	FSM	ENSMUSG00000071229.4	ENSMUST00000045976.7	913	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGTTCTTTGTAACTGA	NA	False	NA	NA	False	AAGAAA	-3	NA	122272085	122275832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_122272425_122275258
transcript_18067.known	chr14	+	3107	17	FSM	ENSMUSG00000025544.14	ENSMUST00000026624.11	3107	17	0	0	0	0	multi-exon	TRUE	canonical	3	817	junction_12	125.603480743967	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTCCAAAGTGTAGTAATT	NA	False	NA	18	True	ATTAAA	-20	NA	122344449	122397016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_122344848_122361127_122361196_122363517_122363612_122370691_122370820_122374783_122374914_122377061_122377187_122378610_122378723_122379775_122379856_122380818_122380928_122382508_122382642_122384076_122384197_122385399_122385458_122387261_122387422_122388145_122388298_122389375_122389488_122392739_122392912_122396060
transcript_1807.nnic	chr1	+	1538	4	NNC	ENSMUSG00000100908.2	novel	316	2	NA	NA	-74	9689	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.657891697365	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCGAGTGACAATGTCTC	NA	False	NA	9	True	ATTAAA	-23	NA	88387330	88402969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_88387678_88397558_88397777_88398642_88398830_88402183
transcript_1808.nnic	chr1	+	1273	3	NNC	ENSMUSG00000100908.2	novel	316	2	NA	NA	-27	9689	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	15.5	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCGAGTGACAATGTCTC	NA	False	NA	9	True	ATTAAA	-23	NA	88387377	88402969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_88387678_88398642_88398830_88402183
transcript_18082.known	chr14	+	1231	8	FSM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	0	0	0	0	multi-exon	FALSE	canonical	3	643	junction_7	45.2372430997437	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	12	True	AATAAA	-22	NA	122419115	122639646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_122419194_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
transcript_18085.nnic	chr14	+	1295	8	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	19401	0	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	209.063900005989	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	12	True	AATAAA	-22	NA	122514853	122639646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_122514996_122548655_122548843_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
transcript_1809.known	chr1	-	471	3	FSM	ENSMUSG00000099553.2	ENSMUST00000190783.2	471	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTTTTAGTTCTTAGCA	NA	False	NA	NA	False	AATAAA	-21	NA	88390330	88371690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_88371959_88373995_88374108_88390239
transcript_18091.nnic	chr14	+	1049	7	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	19460	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	260.820500216784	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTATGGTTTTGCTATTGT	NA	False	NA	12	True	AATAAA	-22	NA	122514912	122639646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_122514996_122608652_122608842_122613293_122613396_122615195_122615290_122616614_122616783_122621609_122621735_122639358
transcript_18096.nic	chr14	+	997	5	ISM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	-23	24033	-23	-24026	5prime_fragment	FALSE	canonical	3	648	junction_1	14.6180539060437	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGGGGTCTACTCGGTT	NA	False	NA	18	True	AATAAA	-31	NA	122419092	122615613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_+_122419194_122548655_122548843_122608652_122608842_122613293_122613396_122615195
transcript_18099.nic	chr14	+	1716	3	ISM	ENSMUSG00000025545.11	ENSMUST00000026625.7	1231	8	-23	29566	-23	-29559	5prime_fragment	FALSE	canonical	3	648	junction_1	10.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGATTAATTCA	NA	False	NA	NA	False	NA	NA	NA	122419092	122610080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_+_122419194_122548655_122548843_122608652
transcript_181.known	SIRV6	+	459	5	FSM	SIRV6A	SIRV614	459	5	0	0	0	0	multi-exon	FALSE	canonical	3	2976	junction_3	7392.30118095847	488	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAAGACTGTATCGGAG	NA	False	NA	NA	False	AAAAAG	-17	NA	2516	10815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6_+_2621_2740_2829_3106_3165_7805_7924_10724
transcript_1810.known	chr1	+	479	3	FSM	ENSMUSG00000097398.3	ENSMUST00000181016.3	479	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	3	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTGGTCTTGGCTCCTT	NA	False	NA	17	True	NA	NA	NA	88682611	88683458	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_88682681_88682805_88683013_88683255
transcript_18100.nnic	chr14	+	1757	3	NNC	ENSMUSG00000025545.11	novel	1231	8	NA	NA	19401	-29559	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	284	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGATTAATTCA	NA	False	NA	NA	False	NA	NA	NA	122514853	122610080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr14_+_122514996_122548655_122548843_122608652
transcript_18102.known	chr14	-	4767	2	FSM	ENSMUSG00000041703.8	ENSMUST00000039118.7	4767	2	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTATTGCTACATTTTATC	NA	False	NA	-26	True	AATAAA	-13	NA	122703089	122694206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_122697188_122701303
transcript_18106.known	chr14	+	2592	24	FSM	ENSMUSG00000041650.16	ENSMUST00000038374.13	2592	24	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	20.0942015919555	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCTCTGCTTGCAATTTT	NA	False	NA	NA	False	TATAAA	-5	NA	122771750	123127356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089_122896193_122901665_122901761_122905932_122906084_122922293_122922438_122923514_122923590_122927510_122927580_122929591_122929668_122938466_122938578_122951434_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
transcript_18109.nnic	chr14	+	2393	23	NIC	ENSMUSG00000041650.16	novel	2592	24	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_16	27.256245019481	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTAGTTTGCCCTTTTTTC	NA	False	NA	16	True	AATAAA	-19	NA	122771722	123127240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089_122896193_122901665_122901761_122905932_122906084_122922293_122922438_122923514_122923590_122927510_122927580_122929591_122929668_122951434_122951538_122975313_122975417_123027767_123027867_123050605_123050660_123114175_123114317_123124458_123124537_123126898
transcript_1811.known	chr1	+	358	3	FSM	ENSMUSG00000097398.3	ENSMUST00000180596.2	358	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	1	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATTAAAGTTGAACCTT	NA	False	NA	-10	True	NA	NA	NA	88682675	88683431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_88682774_88682928_88683013_88683255
transcript_18113.nic	chr14	+	1170	10	ISM	ENSMUSG00000041650.16	ENSMUST00000038374.13	2592	24	-28	230857	-13	-5240	5prime_fragment	FALSE	canonical	3	76	junction_1	11.3409560421782	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAGTGTCTTCCATGACT	NA	False	NA	NA	False	NA	NA	NA	122771722	122896499	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr14_+_122771872_122795126_122795205_122800190_122800239_122800330_122800400_122820028_122820143_122822468_122822523_122854165_122854298_122875792_122875830_122887663_122887743_122896089
transcript_18114.known	chr14	-	3416	18	FSM	ENSMUSG00000041594.19	ENSMUST00000037726.14	3416	18	0	0	0	0	multi-exon	TRUE	canonical	3	136	junction_13	13.8696352514015	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGGTTTCTTTTTAG	NA	False	NA	4	True	AGTAAA	-26	NA	123220695	123156382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215485_123215699_123220583
transcript_18115.nic	chr14	-	3329	18	NIC	ENSMUSG00000041594.19	novel	3416	18	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_16	38.2839509410142	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGGTTTCTTTTTAG	NA	False	NA	4	True	AGTAAA	-26	NA	123220702	123156382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr14_-_123157556_123158644_123158715_123163375_123163489_123164963_123165079_123170231_123170374_123170508_123170617_123170739_123170820_123178716_123178849_123179226_123179399_123180566_123180770_123182085_123182251_123182919_123183013_123187900_123188005_123200709_123200798_123209151_123209369_123210581_123210698_123215579_123215699_123220583
transcript_18119.known	chr14	-	1076	3	FSM	ENSMUSG00000041625.16	ENSMUST00000038075.12	1076	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	3	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTTGGTCCTTCTTTTG	NA	False	NA	-2	True	ATTAAA	-29	NA	123150574	123128271	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr14_-_123129229_123137887_123137945_123150512
transcript_1812.nic	chr1	+	606	2	NIC	ENSMUSG00000097398.3	novel	479	3	NA	NA	-2	0	intron_retention	FALSE	canonical	3	14	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTTGGTCTTGGCTCCTT	NA	False	NA	17	True	NA	NA	NA	88682609	88683458	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_88683013_88683255
transcript_18121.known	chr15	-	798	9	FSM	ENSMUSG00000091119.3	ENSMUST00000165386.2	798	9	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_4	8.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAGAGCACTTAATGCATTA	8096	False	NA	NA	False	NA	NA	NA	3333008	3310108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_3310232_3310504_3310589_3312299_3312428_3319606_3319710_3321861_3321927_3323334_3323404_3327582_3327689_3330586_3330676_3332977
transcript_18125.known	chr15	-	1171	9	FSM	ENSMUSG00000055737.13	ENSMUST00000110698.9	1171	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.992156741649222	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACAGAATTTGTTTCCAAA	NA	False	NA	NA	False	TTTAAA	-7	NA	3612670	3357006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_3357169_3357455_3357625_3362828_3363008_3370400_3370574_3375990_3376015_3376953_3377084_3418129_3418196_3487411_3487491_3612481
transcript_18126.known	chr15	-	738	3	FSM	ENSMUSG00000055737.13	ENSMUST00000159912.2	738	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATGTTAAAATAATAAAAG	NA	False	NA	NA	False	NA	NA	NA	3612669	3573318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_3573716_3581014_3581168_3612481
transcript_18128.known	chr15	-	5076	6	FSM	ENSMUSG00000041935.11	ENSMUST00000046633.10	5076	6	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_4	35.1681674245332	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTCTTACTTTCTTTT	2180	False	NA	-10	True	AATAAA	-20	NA	4025226	4011516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_4015962_4018072_4018188_4019036_4019169_4021199_4021347_4021839_4021947_4025096
transcript_18135.known	chr15	+	3527	17	FSM	ENSMUSG00000022186.15	ENSMUST00000110690.9	3527	17	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_7	29.8008362927955	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAATGTGTGTGTCCTCTTA	NA	False	NA	16	True	AATAAA	-20	NA	4055864	4184826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_4056332_4064741_4064851_4066572_4066664_4076946_4077083_4083196_4083347_4087150_4087258_4089417_4089479_4120649_4120758_4121892_4122008_4123496_4123592_4125953_4126003_4130608_4130682_4131285_4131362_4158315_4158406_4172273_4172355_4177046_4177149_4183209
transcript_18139.nnic	chr15	+	595	4	NNC	ENSMUSG00000041841.9	novel	835	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	9909.82187304876	592	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGTGGTGATCTAAGGT	2248	False	NA	36	True	AATAAA	-17	NA	5146126	5148159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_5146390_5146768_5146905_5147100_5147186_5148048
transcript_1814.nnic	chr1	+	790	2	NNC	ENSMUSG00000092627.3	novel	1372	2	NA	NA	-35	679	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATCGACCCGATTCTTTG	NA	False	NA	14	True	GATAAA	-21	NA	89857920	89860263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_89858176_89859728
transcript_18140.known	chr15	+	556	4	FSM	ENSMUSG00000041841.9	ENSMUST00000227463.2	556	4	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_1	9620.00361515294	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCTGTGGTGATCTAAG	2304	False	NA	34	True	AATAAA	-15	NA	5146182	5148157	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_5146409_5146768_5146905_5147100_5147186_5148048
transcript_18141.known	chr15	+	410	4	FSM	ENSMUSG00000041841.9	ENSMUST00000226758.2	410	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	9929.13252337115	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTTCAATCAGTCATAAAA	2552	False	NA	-4	True	NA	NA	NA	5146430	5148119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_5146549_5146768_5146905_5147100_5147186_5148048
transcript_18143.known	chr15	+	925	3	FSM	ENSMUSG00000041841.9	ENSMUST00000227635.2	925	3	0	0	0	0	multi-exon	FALSE	canonical	3	15185	junction_2	4434.5	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTGTGGTGATCTAAGGT	2297	False	NA	36	True	AATAAA	-17	NA	5146175	5148159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_5146905_5147100_5147186_5148048
transcript_18144.known	chr15	-	482	1	FSM	ENSMUSG00000068706.4	ENSMUST00000090488.4	482	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	310	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGCCTGGGACGGAGCC	NA	False	NA	NA	False	NA	NA	NA	5150617	5150135	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_5150100_5150600
transcript_18145.known	chr15	+	4618	9	FSM	ENSMUSG00000050697.10	ENSMUST00000228218.2	4618	9	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_2	19.5316249964001	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTACACAGTATTTCTT	NA	False	NA	11	True	AATAAA	-20	NA	5173372	5211373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_5173478_5190083_5190226_5194192_5194287_5198048_5198194_5199409_5199498_5203688_5203914_5205966_5206454_5206559_5206687_5208168
transcript_18147.nnic	chr15	+	1618	8	NIC	ENSMUSG00000050697.10	novel	4655	9	NA	NA	-23	-2959	combination_of_known_splicesites	FALSE	canonical	3	34	junction_2	45.007482371132	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAAATTTTGCTTATTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	5173319	5208414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_5173478_5190083_5190226_5198048_5198194_5199409_5199498_5203688_5203914_5205966_5206454_5206559_5206687_5208168
transcript_18148.known	chr15	+	1671	5	FSM	ENSMUSG00000022151.17	ENSMUST00000118193.8	1671	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	36.9323706252388	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTCCTTTTATTCTT	NA	False	NA	31	True	AGTAAA	-31	NA	5215005	5247817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_5215054_5219062_5219285_5237849_5237932_5241479_5241612_5246630
transcript_18150.known	chr15	+	1832	5	FSM	ENSMUSG00000022151.17	ENSMUST00000022751.15	1832	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	41.1430431543414	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTCCTTTTATTCTT	NA	False	NA	31	True	AGTAAA	-31	NA	5215040	5247817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_5215250_5219062_5219285_5237849_5237932_5241479_5241612_5246630
transcript_18151.known	chr15	+	1583	4	FSM	ENSMUSG00000022151.17	ENSMUST00000081640.12	1583	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	60.1239460522086	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTCCTTTTATTCTT	NA	False	NA	31	True	AGTAAA	-31	NA	5215207	5247817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_5215250_5219062_5219285_5241479_5241612_5246630
transcript_18154.known	chr15	+	2633	7	FSM	ENSMUSG00000050310.10	ENSMUST00000226201.2	2633	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	4.31083905212585	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAAAGGGAAGATGGGC	NA	False	NA	NA	False	TTTAAA	-23	NA	6737861	6788096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_6737933_6738113_6738162_6764845_6764944_6773808_6773874_6774929_6775062_6780138_6780203_6785941
transcript_18155.known	chr15	+	279	1	FSM	ENSMUSG00000115497.2	ENSMUST00000228223.2	279	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGAACGCTTCACGAATT	NA	False	NA	6	True	AGTAAA	-28	NA	7790194	7790473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_7790200_7790500
transcript_18157.known	chr15	-	2126	18	FSM	ENSMUSG00000039828.8	ENSMUST00000045766.8	2126	18	0	0	0	0	multi-exon	TRUE	canonical	3	158	junction_1	88.3053055575902	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGATTTTGTCCTTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	8128675	7902542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_7902735_7913761_7913925_7915043_7915161_7916809_7916890_7918556_7918658_7949967_7950107_7951549_7951635_7953688_7953789_8006448_8006624_8049069_8049147_8065211_8065366_8072191_8072326_8075912_8075973_8108643_8108849_8111945_8112067_8123159_8123244_8128439_8128506_8128602
transcript_18158.known	chr15	-	1130	4	FSM	ENSMUSG00000039828.8	ENSMUST00000227371.2	1130	4	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	79.3823378060608	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGCATTATTCAGCAATA	NA	False	NA	NA	False	NA	NA	NA	8128693	8121710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_8122600_8123159_8123244_8128439_8128506_8128602
transcript_1816.nnic	chr1	-	2082	12	NNC	ENSMUSG00000026301.17	novel	3210	19	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_11	22.6412919060188	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTAATTTGGTCACTGG	NA	False	NA	-1	True	AATAAA	-20	NA	90017875	89969853	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_89970465_89973313_89973553_89975510_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017643
transcript_18161.known	chr15	+	10469	53	FSM	ENSMUSG00000039801.8	ENSMUST00000110617.2	10469	53	0	0	0	0	multi-exon	TRUE	canonical	2	15	junction_2	13.020182330866	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGCCCACAGTCTGT	NA	False	NA	8	True	AATAAA	-15	NA	8198589	8300642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_8198974_8199789_8199879_8201176_8201306_8204209_8204346_8204440_8204561_8205602_8205836_8207820_8207928_8209241_8209399_8210362_8210467_8211599_8211783_8215566_8215817_8215982_8216136_8216307_8217063_8217870_8218080_8218280_8218362_8223807_8223973_8228664_8228824_8230617_8230847_8231677_8231818_8232744_8232963_8233156_8233322_8239445_8239585_8241852_8241963_8242112_8242272_8243190_8243300_8245791_8246084_8247906_8248880_8250341_8250452_8251266_8251434_8251820_8251892_8252554_8252635_8256396_8256578_8256769_8257052_8258073_8258815_8259698_8259854_8260595_8260726_8261529_8261585_8263247_8263353_8271753_8271826_8273286_8273397_8273704_8273898_8274092_8274246_8276389_8276740_8280460_8280549_8281632_8281798_8287797_8287829_8289217_8289350_8290003_8290170_8291810_8291870_8292411_8292565_8293812_8293926_8299102_8299282_8300162
transcript_18162.nic	chr15	-	1573	9	ISM	ENSMUSG00000022141.8	ENSMUST00000052965.8	9423	47	-181	68544	-181	-68544	5prime_fragment	FALSE	canonical	2	7	junction_5	2.87228132326901	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAAAAGAAAATTAAATTAG	NA	False	NA	NA	False	NA	NA	NA	8474128	8388644	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_-_8388751_8390399_8390497_8391201_8391363_8395275_8395428_8396113_8396214_8398944_8399073_8401514_8401681_8403443_8403587_8473608
transcript_18163.known	chr15	-	9423	47	FSM	ENSMUSG00000022141.8	ENSMUST00000052965.8	9423	47	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_43	23.7522658356028	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTGTTTCCATTTGAA	NA	False	NA	0	True	AATAAA	-22	NA	8473947	8320100	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_8321075_8321620_8321810_8322567_8322743_8324994_8325270_8326215_8326363_8330178_8330380_8330773_8330882_8332319_8332511_8332876_8333051_8335332_8335424_8336353_8336509_8337048_8337143_8337329_8337471_8340628_8340766_8341817_8341927_8347846_8347901_8348940_8349040_8351969_8352105_8352892_8353040_8353135_8353235_8353731_8353835_8353928_8354144_8355167_8355258_8356482_8356627_8357228_8357362_8357875_8357959_8359661_8359801_8361872_8361974_8362491_8362573_8363064_8363217_8364333_8364566_8364667_8364755_8366337_8366442_8367992_8368083_8368164_8368237_8368358_8368557_8372958_8373142_8379687_8381296_8388123_8388751_8390399_8390497_8391201_8391363_8395275_8395428_8396113_8396214_8398944_8399073_8401514_8401681_8403443_8403587_8473608
transcript_18165.known	chr15	-	4163	10	FSM	ENSMUSG00000005360.15	ENSMUST00000005493.14	4163	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	8.52447456836295	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATTTGTATGTTATTTAT	NA	False	NA	NA	False	AATAAA	-22	NA	8740248	8663607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_8665824_8668539_8668675_8671665_8671861_8672383_8672618_8675143_8675437_8679026_8679070_8680332_8680538_8717771_8717910_8738045_8738324_8739822
transcript_18168.nnic	chr15	-	1025	5	NNC	ENSMUSG00000005360.15	novel	964	3	NA	NA	-8	-14915	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	26.9953699733862	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGCAGCCTGAGAAGTGA	NA	False	NA	NA	False	AATAAA	-21	NA	8739988	8686654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_8686996_8717194_8717297_8717771_8717910_8738045_8738324_8739822
transcript_18169.known	chr15	-	1252	5	FSM	ENSMUSG00000005360.15	ENSMUST00000153455.8	1252	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	23.8156986040721	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAAAAATGCATAACAT	NA	False	NA	NA	False	NA	NA	NA	8739900	8710004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_8710661_8717194_8717297_8717771_8717910_8738045_8738324_8739822
transcript_1817.known	chr1	-	2060	12	FSM	ENSMUSG00000026301.17	ENSMUST00000189690.7	2060	12	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_8	12	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCAGTAATTTGGTCAC	NA	False	NA	-4	True	AATAAA	-17	NA	90017866	89969856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_89970465_89973313_89973553_89975510_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
transcript_18172.known	chr15	-	728	5	FSM	ENSMUSG00000005360.15	ENSMUST00000157065.2	728	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	27.3072792493137	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGACTTTCCTTTGTGGTT	NA	False	NA	NA	False	ATTAAA	-18	NA	8739893	8715499	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_8715639_8717194_8717297_8717771_8717910_8738045_8738324_8739822
transcript_18176.known	chr15	+	4135	13	FSM	ENSMUSG00000022253.18	ENSMUST00000190591.10	4135	13	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_7	89.5046553724069	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAATATAAATTTAGAAT	6	True	NA	NA	False	NA	NA	NA	9071339	9110979	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_9071846_9083349_9083439_9084241_9084331_9085804_9085887_9091254_9091339_9092802_9092940_9096102_9096182_9098897_9098964_9100194_9100291_9103070_9103127_9103413_9103468_9106816_9106941_9108306
transcript_18178.known	chr15	-	3118	10	FSM	ENSMUSG00000054115.13	ENSMUST00000096482.10	3118	10	0	0	0	0	multi-exon	TRUE	canonical	3	163	junction_7	20.0690167197789	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTGAGCTGCTTTTTAT	NA	False	NA	NA	False	AATAAA	-20	NA	9140452	9112072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_9113956_9116947_9117056_9117177_9117230_9121638_9121770_9122323_9122423_9123956_9124092_9125146_9125291_9127972_9128085_9139518_9139791_9140270
transcript_18179.known	chr15	-	1391	3	FSM	ENSMUSG00000054115.13	ENSMUST00000191316.2	1391	3	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_1	23	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTCTAAAAACCTTGCGTG	NA	False	NA	NA	False	NA	NA	NA	9140439	9127134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_9128085_9139518_9139791_9140270
transcript_18181.known	chr15	+	8098	18	FSM	ENSMUSG00000039704.9	ENSMUST00000227556.3	8098	18	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_6	5.43473386468287	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTTGATTATTTATGT	32	False	NA	11	True	AATAAA	-21	NA	9140636	9202569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_9140828_9149062_9149293_9149541_9149640_9151570_9151667_9156292_9156461_9157299_9157511_9165874_9165950_9171183_9171298_9172143_9172328_9175210_9175393_9175872_9176007_9177738_9177845_9178348_9178447_9182571_9182676_9183996_9184044_9186682_9186789_9194761_9194889_9196742
transcript_18182.known	chr15	+	949	5	FSM	ENSMUSG00000039676.5	ENSMUST00000042360.5	949	5	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	9.67923034130297	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGCCTCCTTTGAAGCT	-3	True	NA	9	True	AATAAA	-22	NA	9436113	9466124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_9436254_9457782_9457920_9461742_9461921_9462676_9462887_9465840
transcript_18183.known	chr15	+	739	4	FSM	ENSMUSG00000039676.5	ENSMUST00000226688.2	739	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	38.1138644939957	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGCCTCCTTTGAAGCT	-3	True	NA	9	True	AATAAA	-22	NA	9436113	9466124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_9436254_9457782_9457920_9461742_9461921_9465840
transcript_18185.known	chr15	-	1422	9	FSM	ENSMUSG00000072663.13	ENSMUST00000159368.2	1422	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	3.23795846174715	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTGTGGCATTTTATTT	-20	True	NA	NA	False	AATAAA	-17	NA	9748863	9704397	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_9704628_9713186_9713375_9716417_9716607_9717536_9717724_9723679_9723745_9725200_9725342_9729702_9729956_9740597_9740701_9748797
transcript_18187.known	chr15	-	2060	12	FSM	ENSMUSG00000044224.17	ENSMUST00000136591.8	2060	12	0	0	0	0	multi-exon	TRUE	canonical	3	660	junction_1	60.8163473021321	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTGCTTCAGTGATTTA	-35	True	NA	-15	True	ATTAAA	-23	NA	10470602	10446841	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_10447313_10447781_10447858_10449661_10449835_10451640_10451684_10452291_10452451_10454855_10454944_10460040_10460193_10461205_10461511_10461961_10462085_10462308_10462433_10463972_10464067_10470350
transcript_18195.known	chr15	-	2664	10	FSM	ENSMUSG00000022247.13	ENSMUST00000022855.12	2664	10	0	0	0	0	multi-exon	FALSE	canonical	3	2074	junction_1	190.855449147086	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATAAGGCTTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	10486033	10474864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_10476683_10476892_10477022_10478754_10478857_10478978_10479030_10479158_10479233_10479334_10479385_10479666_10479738_10481801_10481846_10483380_10483493_10485820
transcript_18197.nnic	chr15	+	1232	7	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	-3	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	359.073653849581	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	1	True	NA	15	True	AATAAA	-20	NA	10486100	10493763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_10486159_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
transcript_18198.nnic	chr15	+	1427	7	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	11	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	324.625639091486	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	15	False	NA	15	True	AATAAA	-20	NA	10486114	10493763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_10486368_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
transcript_18199.nnic	chr15	+	1467	7	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	11	3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	348.759109797388	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	15	False	NA	15	True	AATAAA	-20	NA	10486114	10493763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_10486368_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492990_10493239_10493477_10493557
transcript_182.known	SIRV6	+	377	4	FSM	SIRV6A	SIRV608	377	4	0	0	0	0	multi-exon	FALSE	canonical	3	18415	junction_1	2118.18355095954	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTTTATTAGCCTGCCTA	NA	False	NA	NA	False	NA	NA	NA	3023	11270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6_+_3165_10724_10819_11031_11109_11205
transcript_1820.nnic	chr1	-	1788	10	NIC	ENSMUSG00000026301.17	novel	2060	12	NA	NA	-33	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_4	21.1607603308052	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTAATTTGGTCACTGG	NA	False	NA	-1	True	AATAAA	-20	NA	90017899	89969853	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_89970465_89973313_89973553_89975510_89975689_89980109_89980197_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
transcript_18201.nnic	chr15	+	1615	6	NNC	ENSMUSG00000022248.15	novel	1514	6	NA	NA	-6	3	intron_retention	FALSE	canonical	0	0	junction_5	316.528039832177	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCGACTTACTGTACTG	-2	True	NA	15	True	AATAAA	-20	NA	10486097	10493763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239_10493477_10493557
transcript_18205.known	chr15	+	1514	6	FSM	ENSMUSG00000022248.15	ENSMUST00000022856.15	1514	6	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_1	183.88039590995	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTACTGTCCTGTGTCTTT	4	True	NA	27	True	AATAAA	-32	NA	10486103	10493775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_10486351_10486538_10486803_10488075_10488185_10490341_10490601_10492850_10492950_10493239
transcript_18209.known	chr15	-	4759	18	FSM	ENSMUSG00000022246.15	ENSMUST00000169385.3	4759	18	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_8	29.2639816641101	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTTGTGGTGTTTGTGA	8897	False	NA	-3	True	AATAAA	-26	NA	10714653	10569054	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_10570861_10571579_10571646_10572416_10572567_10574397_10575931_10578453_10578573_10583867_10583923_10587923_10588011_10589344_10589432_10591672_10591702_10592157_10592337_10593085_10593193_10595071_10595143_10595920_10595979_10599805_10599871_10610090_10610180_10633221_10633353_10690456_10690539_10714608
transcript_1821.nic	chr1	-	1392	10	ISM	ENSMUSG00000026301.17	ENSMUST00000189690.7	2060	12	-33	5508	-33	-5017	5prime_fragment	FALSE	canonical	3	59	junction_6	13.200261875442	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTATGGTTAGAGGAACTG	NA	False	NA	NA	False	NA	NA	NA	90017899	89975364	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_89975689_89980109_89980197_89994446_89994647_89998233_89998342_90001468_90001552_90005528_90005597_90008581_90008675_90009037_90009145_90017196_90017273_90017653
transcript_18210.nic	chr15	-	580	3	ISM	ENSMUSG00000022246.15	ENSMUST00000226530.2	2375	6	-103	38987	-103	0	5prime_fragment	FALSE	canonical	3	145	junction_2	4	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	-6	True	NA	NA	False	NA	NA	NA	10714813	10633059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_-_10633353_10690456_10690539_10714608
transcript_18212.known	chr15	+	2577	5	FSM	ENSMUSG00000022244.8	ENSMUST00000070877.7	2577	5	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	9.36416040016402	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAATCACCAATGCCAC	49	False	NA	NA	False	AATAAA	-17	NA	10981841	10996712	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_10982140_10983435_10983580_10984771_10984933_10988844_10989032_10994925
transcript_18214.nnic	chr15	+	1424	4	NIC	ENSMUSG00000022244.8	novel	2577	5	NA	NA	-27	600	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	57.3313953160822	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCAGTGGTTTTAAGTT	22	False	NA	35	True	AATAAA	-45	NA	10981814	10995693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_10982140_10983435_10983580_10988844_10989032_10994925
transcript_18217.known	chr15	-	4005	19	FSM	ENSMUSG00000022241.7	ENSMUST00000022849.7	4005	19	0	0	0	0	multi-exon	FALSE	canonical	3	2899	junction_10	215.823487548918	362	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGTGACTCCAGAGCACA	NA	False	NA	NA	False	AATAAA	-27	NA	11399751	11382386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_11384246_11385169_11385285_11387137_11387211_11387348_11387454_11387557_11387659_11387786_11387865_11388166_11388305_11388383_11388547_11389661_11389829_11390397_11390497_11391146_11391294_11391899_11391979_11392055_11392121_11392317_11392436_11392872_11392995_11393242_11393367_11394309_11394501_11397266_11397348_11399571
transcript_18226.known	chr15	-	2437	8	FSM	ENSMUSG00000022206.8	ENSMUST00000228603.2	2437	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	6.17433793856409	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGGAGGAGGTGTGTGACAA	1445	False	NA	NA	False	ATTAAA	-22	NA	11905760	11844468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_11845375_11846383_11846469_11848554_11848691_11851513_11851609_11858702_11858839_11883383_11883551_11895767_11895891_11904971
transcript_18227.known	chr15	-	3372	5	FSM	ENSMUSG00000022205.16	ENSMUST00000022816.15	3372	5	0	0	0	0	multi-exon	FALSE	canonical	3	7728	junction_1	236.548620794965	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCTTTGTGTTATCCCA	809	False	NA	NA	False	AATAAA	-11	NA	11996144	11981424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_11984384_11986541_11986651_11991044_11991168_11993874_11993948_11996036
transcript_18229.known	chr15	+	4850	20	FSM	ENSMUSG00000022201.17	ENSMUST00000122941.8	4850	20	0	0	0	0	multi-exon	TRUE	canonical	1	184	junction_8	102.146464828737	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATCTGTCTATATTATCTG	40	False	NA	NA	False	AATACA	-17	NA	12117916	12185769	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_12118034_12118324_12118425_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613_12149806_12150258_12150551_12152886_12153084_12154531_12154652_12156348_12156495_12159684_12159848_12160570_12160777_12162199_12162351_12166230_12166373_12170901_12171000_12171844_12171941_12180707_12180820_12180928_12181027_12184044
transcript_1823.known	chr1	+	3065	2	FSM	ENSMUSG00000044337.6	ENSMUST00000065587.5	3065	2	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTACATCCTTTGATGTT	NA	False	NA	NA	False	NA	NA	NA	90131701	90144473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_90131810_90141516
transcript_18232.known	chr15	+	513	3	FSM	ENSMUSG00000022201.17	ENSMUST00000124621.2	513	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	305.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATTTTCCTAGCTGTAA	75	False	NA	NA	False	ACTAAA	-25	NA	12117951	12122423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_12118034_12118324_12118425_12122092
transcript_18233.known	chr15	+	1115	7	FSM	ENSMUSG00000022201.17	ENSMUST00000128475.9	1115	7	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_4	46.1483116339771	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAGAAACATAAAAAAAAGG	60	False	NA	NA	False	TATAAA	-15	NA	12117936	12149636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_12118034_12118324_12118425_12136481_12136765_12137990_12138136_12140519_12140739_12146234_12146483_12149613
transcript_18235.known	chr15	-	3966	9	FSM	ENSMUSG00000022195.8	ENSMUST00000057256.5	3966	9	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_8	28.8809517675578	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCAAAAACAAAAAAGGAAAG	NA	False	NA	NA	False	NA	NA	NA	12824735	12808262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12823646_12823793_12824552
transcript_18240.known	chr15	-	3156	8	FSM	ENSMUSG00000022195.8	ENSMUST00000228177.2	3156	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_6	133.553321920192	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATGAAATTAAATCCTGT	NA	False	NA	NA	False	AATAAA	-14	NA	12824697	12808731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818214_12821489_12821640_12824552
transcript_18241.known	chr15	-	3206	8	FSM	ENSMUSG00000022195.8	ENSMUST00000227299.2	3206	8	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_7	97.0238767163074	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCTGATAATCAAAAGATT	NA	False	NA	-12	True	AATAAA	-19	NA	12824716	12808857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_12810931_12812018_12812159_12814276_12814344_12815935_12816058_12816405_12816469_12817943_12818371_12821489_12821640_12824552
transcript_18247.known	chr15	+	4519	35	FSM	ENSMUSG00000022191.17	ENSMUST00000090292.13	4519	35	0	0	0	0	multi-exon	FALSE	canonical	3	495	junction_3	95.4793814587056	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTCTTTGCTACAGAGTAT	53	False	NA	30	True	ATTAAA	-20	NA	12824948	12935377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_12825025_12826150_12826254_12827312_12827379_12833914_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
transcript_18248.known	chr15	+	4570	35	FSM	ENSMUSG00000022191.17	ENSMUST00000169061.8	4570	35	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	145.136545301337	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTCTTTGCTACAGAGTA	5	True	NA	29	True	ATTAAA	-19	NA	12824900	12935376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_12825029_12826150_12826254_12827312_12827379_12833914_12834749_12837368_12837462_12842142_12842254_12842385_12842618_12846153_12846296_12848138_12848294_12851881_12851963_12859458_12859546_12861763_12861851_12865112_12865185_12866648_12866731_12867681_12867757_12878743_12878914_12881708_12881834_12883251_12883352_12885073_12885182_12889704_12889813_12890119_12890259_12890572_12890634_12901188_12901249_12902670_12902771_12905684_12905788_12907409_12907481_12912596_12912642_12913984_12914143_12915424_12915531_12924141_12924284_12926076_12926160_12926291_12926396_12928948_12929042_12929750_12929798_12935077
transcript_18249.known	chr15	-	93	1	FSM	ENSMUSG00000115358.2	ENSMUST00000227289.2	93	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGTTTTATGACAAAAT	NA	False	NA	-56	True	NA	NA	NA	18385527	18385434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_18385400_18385500
transcript_1825.known	chr1	+	2287	8	FSM	ENSMUSG00000034432.12	ENSMUST00000036153.12	2287	8	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_7	24.8185250100297	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTAGTGGGTTACCTAA	NA	False	NA	21	True	ATTAAA	-22	NA	90530702	90541063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_90531350_90532096_90532168_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
transcript_18251.known	chr15	+	881	5	FSM	ENSMUSG00000022272.18	ENSMUST00000135173.8	881	5	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	256.595498791386	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGGGAGGAAGAGAAGAAGA	186	False	NA	4	True	NA	NA	NA	25753064	25779860	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_25753407_25776106_25776232_25776403_25776519_25778166_25778274_25779668
transcript_18252.known	chr15	+	1030	7	FSM	ENSMUSG00000022272.18	ENSMUST00000125667.3	1030	7	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_1	101.286173236473	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAGGGAGAACAAGCAGGT	-10	True	NA	NA	False	NA	NA	NA	25774072	25781143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_25774395_25776106_25776232_25776403_25776519_25778166_25778274_25779668_25779897_25780449_25780499_25781059
transcript_18253.known	chr15	+	3248	9	FSM	ENSMUSG00000022270.17	ENSMUST00000022881.15	3248	9	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	4.98591766879478	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTTTATGTGTATGCC	9	False	NA	21	True	TATAAA	-17	NA	25843265	25973773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_25843699_25889566_25889674_25895198_25895230_25964309_25964437_25966718_25966804_25968492_25968631_25969881_25969947_25970183_25970311_25971638
transcript_18257.known	chr15	+	1555	4	FSM	ENSMUSG00000039168.16	ENSMUST00000044524.16	1555	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	1.69967317119759	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCTCTTACGGTTCAG	-9	True	NA	21	True	AATAAA	-21	NA	31224459	31274487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_31224730_31235918_31236016_31272534_31272578_31273342
transcript_18258.known	chr15	-	7466	4	FSM	ENSMUSG00000022237.18	ENSMUST00000123325.9	7466	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGGTATTTTCCTGTCAT	NA	False	NA	NA	False	AATAAA	-37	NA	31367872	31291623	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_31298131_31305137_31305279_31325231_31325362_31367184
transcript_18259.known	chr15	-	2070	4	FSM	ENSMUSG00000022237.18	ENSMUST00000110410.10	2070	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.86744175568088	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAGAAGGGATTCTCCCC	72	False	NA	NA	False	AATAAA	-24	NA	31367689	31296809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_31298131_31305137_31305279_31325231_31325362_31367211
transcript_18260.known	chr15	-	957	5	FSM	ENSMUSG00000022236.11	ENSMUST00000110408.3	957	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.6583123951777	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGAGTTTTTCTCAGA	NA	False	NA	NA	False	AATACA	-17	NA	31453883	31441356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_31441527_31443437_31443614_31449109_31449272_31451227_31451352_31453558
transcript_18261.known	chr15	-	6260	26	FSM	ENSMUSG00000039100.11	ENSMUST00000090227.6	6260	26	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	16.0775122453693	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTTGGCTGTGTGTTT	NA	False	NA	NA	False	AATAAA	-25	NA	31531199	31456036	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_31459426_31462087_31462224_31465399_31465533_31467835_31467926_31469688_31469824_31471762_31471945_31475891_31475962_31478440_31478643_31480430_31480569_31482643_31482745_31482949_31483070_31485091_31485227_31486069_31486145_31486227_31486297_31486500_31486582_31488937_31488997_31490721_31490774_31492884_31492918_31494216_31494279_31496149_31496340_31498719_31498889_31501061_31501135_31502865_31503010_31505830_31505905_31509871_31509969_31530948
transcript_18262.known	chr15	+	1155	6	FSM	ENSMUSG00000022235.16	ENSMUST00000070918.14	1155	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	2.60768096208106	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATGCGTAGCTTCACTTT	55	False	NA	NA	False	AATAAA	-18	NA	31568943	31590265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_31569086_31581985_31582220_31584110_31584219_31585440_31585584_31588313_31588406_31589829
transcript_18271.known	chr15	-	1853	11	FSM	ENSMUSG00000022234.16	ENSMUST00000022842.16	1853	11	0	0	0	0	multi-exon	FALSE	canonical	3	5476	junction_6	308.656459514458	774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGAGCTTGATAGAGGAT	NA	False	NA	-3	True	AATAAA	-30	NA	31601950	31590945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_31591202_31592430_31592612_31592791_31592930_31593012_31593199_31593660_31593781_31594242_31594393_31594479_31594673_31595790_31595990_31597556_31597722_31598145_31598207_31601746
transcript_183.known	SIRV6	+	783	3	FSM	SIRV6A	SIRV615	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	18822	junction_2	2138	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGAAAGAGCAATCAACTCA	NA	False	NA	NA	False	NA	NA	NA	10237	11330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6_+_10819_11031_11109_11205
transcript_18302.known	chr15	-	769	4	FSM	ENSMUSG00000022234.16	ENSMUST00000159121.2	769	4	0	0	0	0	multi-exon	FALSE	canonical	3	5907	junction_1	275.901351130355	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGAATCATTTTGGGGAAG	NA	False	NA	NA	False	NA	NA	NA	31601886	31595586	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_31595990_31597556_31597722_31598145_31598207_31601746
transcript_18303.known	chr15	+	2364	6	FSM	ENSMUSG00000039065.12	ENSMUST00000161061.3	2364	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.3490087672889	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTCTCCTGGCCTCGGGCT	115	False	NA	NA	False	ATTAAA	-26	NA	31602263	31618755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_31602296_31603594_31603721_31606056_31606335_31608241_31608380_31609711_31609763_31617016
transcript_18304.known	chr15	+	1164	5	FSM	ENSMUSG00000039065.12	ENSMUST00000042702.7	1164	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	6.68954408012983	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAACCGTGACAAGGAGTG	115	False	NA	27	True	ATTAAA	-27	NA	31602263	31617681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_31602296_31606056_31606335_31608241_31608380_31609711_31609763_31617016
transcript_18305.known	chr15	+	4655	2	FSM	ENSMUSG00000039065.12	ENSMUST00000160146.2	4655	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGCGAAAAAACAAGCTCT	NA	False	NA	NA	False	NA	NA	NA	31601997	31621373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_31602296_31617016
transcript_18306.known	chr15	-	1486	2	FSM	ENSMUSG00000096956.3	ENSMUST00000181536.3	1486	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGTTTGGCTCATTGTGTG	3844	False	NA	NA	False	ATTAAA	-20	NA	32244808	32240710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_32241916_32244527
transcript_18307.known	chr15	+	3527	5	FSM	ENSMUSG00000022261.7	ENSMUST00000022871.7	3527	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	11.0227038425243	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCTGTGTGAGTATTGCT	26	False	NA	NA	False	ATTAAA	-44	NA	32920868	33035081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_32921452_33017247_33017360_33023794_33023932_33028192_33028329_33032522
transcript_18313.known	chr15	+	6919	12	FSM	ENSMUSG00000022255.17	ENSMUST00000022865.17	6919	12	0	0	0	0	multi-exon	TRUE	canonical	3	477	junction_6	48.3699585751527	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGCCTGGCTTGTGTTTT	52	False	NA	1	True	NA	NA	NA	34082864	34145770	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34123813_34123913_34131309_34131435_34134436_34134545_34136832_34136974_34139886_34140044_34140837
transcript_18317.known	chr15	+	1593	10	FSM	ENSMUSG00000022255.17	ENSMUST00000163333.9	1593	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_9	216.816757131084	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATCTTATGCACGACCT	83	False	NA	NA	False	NA	NA	NA	34083453	34141289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34131309_34131435_34134436_34134545_34136832_34136974_34140837
transcript_18319.nic	chr15	+	1689	9	ISM	ENSMUSG00000022255.17	ENSMUST00000022865.17	6919	12	-55	11280	-30	0	5prime_fragment	FALSE	canonical	3	477	junction_6	54.812749429307	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAGAAGAAAAA	-3	True	NA	NA	False	GATAAA	-37	NA	34082809	34134490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34123813_34123913_34131309_34131435_34134436
transcript_1832.known	chr1	+	508	7	FSM	ENSMUSG00000034432.12	ENSMUST00000186750.2	508	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	273.658800130544	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTTCCGCCAATCCCCA	NA	False	NA	NA	False	NA	NA	NA	90531249	90539902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_90531350_90533185_90533235_90534258_90534392_90537814_90537923_90538696_90538760_90539261_90539310_90539895
transcript_18320.nic	chr15	+	1590	8	ISM	ENSMUSG00000022255.17	ENSMUST00000163333.9	1593	10	-644	6799	-30	0	5prime_fragment	FALSE	canonical	3	78	junction_6	183.709286757138	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAGAAGAAAAA	-3	True	NA	NA	False	GATAAA	-37	NA	34082809	34134490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_+_34083560_34099629_34099732_34114169_34114255_34114944_34115122_34116456_34116523_34118025_34118257_34131309_34131435_34134436
transcript_18321.known	chr15	+	4582	2	FSM	ENSMUSG00000022255.17	ENSMUST00000172082.2	4582	2	0	0	0	0	multi-exon	FALSE	canonical	3	602	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAAAAAATCT	27	False	NA	NA	False	NA	NA	NA	34082839	34103491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_34083560_34099629
transcript_18322.known	chr15	+	1902	7	FSM	ENSMUSG00000022257.5	ENSMUST00000022867.5	1902	7	0	0	0	0	multi-exon	FALSE	canonical	3	358	junction_4	34.9698282650757	450	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCGTGGCTCCGCTGACT	31	True	NA	NA	False	ATTAAA	-22	NA	34238173	34284448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_34238569_34258826_34258939_34272489_34272564_34273373_34273497_34276281_34276381_34277577_34277674_34283445
transcript_18327.nnic	chr15	-	491	5	NNC	ENSMUSG00000058600.14	novel	886	5	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	777	junction_4	1906.75842400132	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	356	False	NA	-20	True	AATAAA	-27	NA	34443373	34440650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443312
transcript_18328.known	chr15	-	886	5	FSM	ENSMUSG00000058600.14	ENSMUST00000079735.12	886	5	0	0	0	0	multi-exon	FALSE	canonical	3	3551	junction_4	804.634194836387	1714	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	NA	False	NA	-20	True	AATAAA	-27	NA	34443786	34440650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170_34443224_34443330
transcript_18333.known	chr15	-	570	4	FSM	ENSMUSG00000058600.14	ENSMUST00000009039.6	570	4	0	0	0	0	multi-exon	FALSE	canonical	3	4307	junction_1	558.07426825548	650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGTGTCTGTTTG	361	False	NA	-25	True	AATAAA	-22	NA	34443368	34440655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_34440751_34441377_34441509_34442780_34442927_34443170
transcript_18339.known	chr15	-	388	3	FSM	ENSMUSG00000058600.14	ENSMUST00000140527.2	388	3	0	0	0	0	multi-exon	FALSE	canonical	3	3551	junction_2	1055.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTTTTTGTAAATGTACC	324	False	NA	NA	False	NA	NA	NA	34443405	34442666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_34442927_34443170_34443224_34443330
transcript_18341.known	chr15	-	505	3	FSM	ENSMUSG00000058600.14	ENSMUST00000142643.2	505	3	0	0	0	0	multi-exon	FALSE	canonical	3	4307	junction_1	417	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTGTCTGTTTGCTTTC	675	False	NA	-20	True	AATAAA	-27	NA	34443054	34440650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_34440751_34441377_34441509_34442780
transcript_18344.known	chr15	-	1004	6	FSM	ENSMUSG00000022323.12	ENSMUST00000022946.6	1004	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	17.7245592328836	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTTTTAATTTTGTTC	NA	False	NA	-10	True	AATAAA	-21	NA	34495401	34484166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_34484682_34485745_34485802_34486756_34486826_34487887_34487943_34488719_34488826_34495198
transcript_18345.known	chr15	+	3395	17	FSM	ENSMUSG00000022325.15	ENSMUST00000052290.14	3395	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	20.2638841291594	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGATTTGTTTTTAATCT	75	False	NA	9	True	ATTAAA	-19	NA	34495449	34530794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_34495562_34499434_34499579_34502456_34502625_34505104_34505281_34506564_34506814_34508265_34508354_34508749_34508938_34509908_34510166_34510477_34510572_34512059_34512172_34512877_34512998_34513235_34513326_34515987_34516104_34517972_34518165_34526308_34526464_34529028_34529377_34530008
transcript_18347.known	chr15	+	3275	16	FSM	ENSMUSG00000022325.15	ENSMUST00000079028.6	3275	16	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	10.1552394796425	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCATGTGGATGATGATTT	94	False	NA	-2	True	ATTAAA	-8	NA	34495468	34530783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_34495562_34499434_34499579_34502456_34502625_34505104_34505281_34506564_34506814_34508265_34508354_34508749_34508938_34509908_34510166_34510477_34510572_34512059_34512172_34512877_34512998_34515987_34516104_34517972_34518165_34526308_34526464_34529028_34529377_34530008
transcript_18348.known	chr15	-	4331	11	FSM	ENSMUSG00000038879.9	ENSMUST00000040791.9	4331	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	2.40831891575846	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAGCAAAGATTCAGAATGT	NA	False	NA	NA	False	AATAAA	-15	NA	34679358	34572944	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_34575718_34577715_34577811_34578853_34578918_34582866_34582956_34584775_34584912_34600160_34600258_34609318_34609441_34625117_34625178_34648811_34648984_34650527_34650597_34678704
transcript_1835.known	chr1	-	1831	6	FSM	ENSMUSG00000026304.14	ENSMUST00000027529.12	1831	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.2	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTCATGAGGTTATATTT	NA	False	NA	NA	False	ATTAAA	-18	NA	90897383	90885854	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_90886722_90886889_90886984_90887723_90887850_90888832_90888985_90891865_90892026_90896951
transcript_18354.known	chr15	-	2914	11	FSM	ENSMUSG00000022329.16	ENSMUST00000018476.14	2914	11	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_2	35.5343495789637	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCGTTGTTGTTATTGT	NA	False	NA	2	True	AATAAA	-21	NA	35155952	34875641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_34876967_34945151_34945328_34959011_34959223_34999976_35000103_35008306_35008445_35072575_35072744_35073202_35073368_35099579_35099695_35114674_35114804_35115710_35115792_35155672
transcript_18358.known	chr15	+	1724	4	FSM	ENSMUSG00000022330.6	ENSMUST00000022952.6	1724	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	10.1434160364686	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCTTCTTGAGATTCATCT	117	False	NA	13	True	AATAAA	-16	NA	35296243	35303451	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_35296614_35300334_35301102_35302057_35302158_35302964
transcript_1836.nnic	chr1	+	2310	14	NIC	ENSMUSG00000026305.16	novel	2849	23	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	30.9888317351218	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGGTTTTGTTTTTTA	NA	False	NA	NA	False	AATGAA	-13	NA	90981167	91056666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91038076_91038170_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
transcript_18360.known	chr15	+	579	3	FSM	ENSMUSG00000022330.6	ENSMUST00000228684.2	579	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	9.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCGGCCCCGGCTCCCTTCC	130	False	NA	NA	False	NA	NA	NA	35296256	35303086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_35296614_35302057_35302158_35302964
transcript_18364.known	chr15	-	606	4	FSM	ENSMUSG00000014313.16	ENSMUST00000156915.3	606	4	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_3	4177.00884472237	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAGTAATTATATGGACA	39	False	NA	-25	True	NA	NA	NA	35938155	35932145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_35932244_35935430_35935560_35937300_35937431_35937906
transcript_18365.known	chr15	-	503	4	FSM	ENSMUSG00000014313.16	ENSMUST00000014457.15	503	4	0	0	0	0	multi-exon	FALSE	canonical	3	8539	junction_3	472.446822404384	7863	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGCTTGGTTATTAAT	NA	False	NA	-1	True	AATAAA	-22	NA	35938392	35932121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_35932244_35935430_35935560_35937300_35937431_35938270
transcript_18369.known	chr15	-	3038	2	FSM	ENSMUSG00000014313.16	ENSMUST00000127999.2	3038	2	0	0	0	0	multi-exon	FALSE	canonical	3	8821	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTAAGTCTTTGCTTGGT	NA	False	NA	-8	True	AATAAA	-15	NA	35938353	35932128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_35932244_35935430
transcript_1837.known	chr1	+	2050	13	FSM	ENSMUSG00000026305.16	ENSMUST00000068116.13	2050	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	28.0697296428416	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTGTGTGGGTTTTGTTT	NA	False	NA	NA	False	AATGAA	-9	NA	90926500	91056662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_90926616_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
transcript_18370.known	chr15	-	738	3	FSM	ENSMUSG00000014313.16	ENSMUST00000153512.2	738	3	0	0	0	0	multi-exon	FALSE	canonical	3	8821	junction_1	415.5	836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTCTTTGCTTGGTTAT	403	False	NA	-5	True	AATAAA	-18	NA	35937791	35932125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_35932244_35935430_35935560_35937300
transcript_18372.known	chr15	+	489	4	FSM	ENSMUSG00000045996.13	ENSMUST00000180159.8	489	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_3	234.864973028239	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCATTTCTATTCAATGT	109	False	NA	NA	False	ATTAAA	-12	NA	36174155	36177153	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_36174228_36175132_36175203_36175529_36175623_36176899
transcript_18374.known	chr15	+	601	4	FSM	ENSMUSG00000045996.13	ENSMUST00000057177.7	601	4	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_1	282.916948944385	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTCTATTCAATGTCTT	132	False	NA	NA	False	ATTAAA	-15	NA	36174178	36177156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_36174360_36175132_36175203_36175529_36175623_36176899
transcript_18380.known	chr15	+	2388	9	FSM	ENSMUSG00000037617.13	ENSMUST00000227582.2	2388	9	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_4	7	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTACTGTGAGTATGCCTG	72	False	NA	NA	False	AATAAA	-14	NA	36210607	36235756	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_36210968_36211245_36211346_36216312_36216466_36221551_36221713_36224254_36224388_36227281_36227409_36233348_36233490_36234446_36234816_36234912
transcript_18383.known	chr15	-	4277	10	FSM	ENSMUSG00000022280.10	ENSMUST00000022890.10	4277	10	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_2	15.6946165182307	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTGTGTGCCCAGGAAT	NA	False	NA	1	True	AATAAA	-17	NA	36283293	36240078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_36242212_36244232_36244377_36245561_36245776_36247267_36247430_36247896_36248012_36253146_36253310_36254528_36254674_36260160_36260370_36265421_36266178_36283057
transcript_18384.known	chr15	-	2509	5	FSM	ENSMUSG00000048307.9	ENSMUST00000057486.9	2509	5	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	35.6195171219375	178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCATCGGCCATTTTCTTA	NA	False	NA	NA	False	AATAAA	-18	NA	36496966	36477813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_36479620_36484126_36484286_36485940_36486274_36496022_36496140_36496872
transcript_1839.nic	chr1	+	2217	13	NIC	ENSMUSG00000026305.16	novel	2849	23	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_11	25.9117090649511	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGGTTTTGTTTTTTA	NA	False	NA	NA	False	AATGAA	-13	NA	90981167	91056666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_90981446_90996284_90996372_91028298_91028335_91028906_91029033_91030968_91031041_91032848_91033020_91035019_91035113_91039877_91040020_91047862_91047913_91050143_91050262_91050799_91050880_91053362_91053468_91055807
transcript_18398.known	chr15	-	2817	15	FSM	ENSMUSG00000022283.16	ENSMUST00000001809.15	2817	15	0	0	0	0	multi-exon	FALSE	canonical	3	5069	junction_10	538.55476006794	1816	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGTTATGCTTTTATTT	377	False	NA	-7	True	AATAAA	-16	NA	36609217	36595904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_36596344_36596806_36596900_36597207_36597339_36597700_36597786_36598216_36598372_36598445_36598557_36599195_36599287_36599448_36599722_36600836_36600933_36601113_36601252_36601558_36601654_36603089_36603230_36605685_36605802_36605987_36606182_36608557
transcript_184.known	SIRV6001	+	6000	1	FSM	SIRV6001A	SIRV6001	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6001_+_0_6000
transcript_18414.known	chr15	-	3288	7	FSM	ENSMUSG00000022285.18	ENSMUST00000022894.14	3288	7	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_6	1526.66484716049	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGAGTCTCAGTGGTGA	NA	False	NA	-39	True	NA	NA	NA	36794782	36771013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36793722_36793920_36794388
transcript_18419.known	chr15	-	2285	6	FSM	ENSMUSG00000022285.18	ENSMUST00000110361.8	2285	6	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_5	1591.90916826306	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAAAAAACCGCT	NA	False	NA	NA	False	NA	NA	NA	36794775	36771812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_36773022_36775482_36775579_36775659_36775824_36776489_36776614_36790927_36791233_36794388
transcript_18427.known	chr15	-	517	4	FSM	ENSMUSG00000062397.9	ENSMUST00000226453.2	517	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	3120.35097740979	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCCTTTGGGCTTCATGC	542	False	NA	11	True	AATAAA	-30	NA	37007259	37001042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007112
transcript_18428.known	chr15	-	4417	4	FSM	ENSMUSG00000062397.9	ENSMUST00000078976.9	4417	4	0	0	0	0	multi-exon	TRUE	canonical	3	6501	junction_2	212.49836600679	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGTCTGTGGTGTTC	155	False	NA	NA	False	NA	NA	NA	37007646	36997270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_37001168_37002082_37002191_37003929_37004067_37007371
transcript_18435.nic	chr15	+	3028	3	ISM	ENSMUSG00000022286.17	ENSMUST00000161933.2	3617	9	29315	0	11981	0	3prime_fragment	FALSE	canonical	3	68	junction_1	5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCAAACAGCTCTCTAGTA	196	False	NA	13	True	AATAAA	-14	NA	37347961	37363806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_+_37348099_37358613_37358679_37360980
transcript_18436.nic	chr15	-	1105	8	ISM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	32	5064	32	-1771	5prime_fragment	FALSE	canonical	3	32	junction_3	9.17850194526229	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTAGTGGTTTTAGTT	7140	False	NA	NA	False	AATAAA	-14	NA	37961315	37929259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_-_37929396_37931845_37931951_37937459_37937594_37944741_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
transcript_18437.nic	chr15	-	1965	5	ISM	ENSMUSG00000022292.17	ENSMUST00000022901.16	4561	9	32	19311	32	1785	5prime_fragment	FALSE	canonical	3	46	junction_2	5.71729831301464	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGAATTGGG	7140	False	NA	NA	False	AATATA	-30	NA	37961315	37943506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_-_37944837_37945282_37945417_37946978_37947096_37953842_37953999_37961087
transcript_18438.known	chr15	-	466	1	FSM	ENSMUSG00000085442.2	ENSMUST00000148102.2	466	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTAAACTGAGTCCAGATGG	NA	False	NA	NA	False	NA	NA	NA	37944036	37943570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_37943600_37944000
transcript_18441.known	chr15	-	3044	4	FSM	ENSMUSG00000037465.11	ENSMUST00000074043.7	3044	4	0	0	0	0	multi-exon	FALSE	canonical	3	2013	junction_1	150.900261394369	222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGAGTCTGTTGTATG	NA	False	NA	-7	True	AATAAA	-18	NA	38300950	38294656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_38296409_38296858_38297772_38297865_38298097_38300802
transcript_18443.known	chr15	-	4217	13	FSM	ENSMUSG00000037458.16	ENSMUST00000110329.8	4217	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	173.208669112015	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTTTACTTTGATGGCTT	NA	False	NA	-8	True	GATAAA	-16	NA	38519507	38488481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38507430_38507591_38514716_38514854_38519152
transcript_18445.known	chr15	-	4871	12	FSM	ENSMUSG00000037458.16	ENSMUST00000065308.13	4871	12	0	0	0	0	multi-exon	FALSE	canonical	2	359	junction_2	59.7608180323933	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGGTGGTTGGTGTTTG	NA	False	NA	-1	True	ATTAAA	-15	NA	38519510	38487670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_38490717_38491719_38491935_38492487_38492604_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497643_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
transcript_1845.known	chr1	+	3851	16	FSM	ENSMUSG00000070732.3	ENSMUST00000094698.2	3851	16	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	27.1317771871533	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACTCCAGTGCTTTCTGT	4264	False	NA	11	True	AATAAA	-17	NA	91072824	91098517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_91072892_91077804_91077896_91079886_91081383_91081615_91081675_91083106_91083278_91084376_91084561_91084639_91084663_91084785_91084871_91090079_91090195_91090773_91090903_91092635_91092716_91092816_91092888_91094520_91094807_91096414_91096561_91096678_91096819_91097809
transcript_18453.known	chr15	-	4109	12	FSM	ENSMUSG00000037458.16	ENSMUST00000129589.8	4109	12	0	0	0	0	multi-exon	FALSE	canonical	2	46	junction_7	170.115711713824	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGCTTTACTTTGATGG	NA	False	NA	-11	True	GATAAA	-13	NA	38519413	38488484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_38490717_38491719_38491935_38492487_38492601_38493717_38493881_38494535_38494611_38495516_38495599_38497507_38497795_38498912_38499086_38500541_38500716_38501647_38501845_38514716_38514854_38519152
transcript_18464.known	chr15	+	2071	13	FSM	ENSMUSG00000022295.9	ENSMUST00000022904.8	2071	13	0	0	0	0	multi-exon	FALSE	canonical	3	1269	junction_12	107.259679697866	434	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGCTAGTCATTTATTTT	184	False	NA	31	True	AATAAA	-17	NA	38662176	38692690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_38662328_38673100_38673265_38674140_38674209_38676271_38676358_38677762_38677858_38679563_38679656_38681310_38681410_38683184_38683254_38687047_38687141_38687259_38687354_38689368_38689467_38690776_38690904_38691855
transcript_18478.known	chr15	+	1166	4	FSM	ENSMUSG00000054196.8	ENSMUST00000067072.5	1166	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	1.88561808316413	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTGTTTATTTGTTTGA	NA	False	NA	NA	False	AATAAA	-18	NA	38940326	38950516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_38940555_38943877_38944100_38947660_38947878_38950017
transcript_1848.nic	chr1	+	3297	15	NIC	ENSMUSG00000070732.3	novel	3851	16	NA	NA	-25	0	combination_of_known_junctions	TRUE	canonical	3	55	junction_1	30.8108945746435	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAAGACTCCAAGCTGTAT	4225	False	NA	32	True	TATAAA	-20	NA	91072785	91098015	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_91072892_91079886_91081383_91081615_91081675_91083106_91083278_91084376_91084561_91084639_91084663_91084785_91084871_91090079_91090195_91090773_91090903_91092635_91092716_91092816_91092888_91094520_91094807_91096414_91096561_91096678_91096819_91097809
transcript_18480.known	chr15	-	5905	7	FSM	ENSMUSG00000022299.10	ENSMUST00000022908.10	5905	7	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	10.9392260542813	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTCAATTTGGCCTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	38976111	38954625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_38959504_38960914_38961061_38961523_38961638_38963267_38963429_38965377_38965464_38969226_38969378_38975742
transcript_18483.known	chr15	+	1551	11	FSM	ENSMUSG00000022300.11	ENSMUST00000022909.10	1551	11	0	0	0	0	multi-exon	FALSE	canonical	2	478	junction_2	96.4514903980234	748	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGCAGTTGTGTGTTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	38976259	39010251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_38976447_38982105_38982306_38982739_38982848_38986607_38986698_38987723_38987880_38991284_38991363_38993610_38993694_39001478_39001644_39007017_39007154_39008485_39008650_39010067
transcript_18488.known	chr15	+	4581	24	FSM	ENSMUSG00000037386.17	ENSMUST00000227381.2	4581	24	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_17	12.1392363269332	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAAT	NA	False	NA	57	True	TTTAAA	-26	NA	39300392	39545849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_39301319_39315435_39315504_39317755_39317876_39320073_39320174_39321159_39321284_39322984_39323032_39325893_39326007_39335729_39335861_39339775_39339948_39341952_39342107_39370361_39370431_39373040_39373198_39374659_39374771_39398233_39398414_39399267_39399378_39430338_39430440_39448985_39449159_39473459_39473538_39479664_39479907_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
transcript_18490.known	chr15	+	3685	6	FSM	ENSMUSG00000037386.17	ENSMUST00000226410.2	3685	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	17.2348484182484	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTGTTGAGGGTGCTG	NA	False	NA	4	True	AATAAA	-14	NA	39522961	39547768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_39523323_39538335_39538478_39542643_39542757_39543025_39543128_39544384_39544525_39544941
transcript_18491.known	chr15	+	1825	4	FSM	ENSMUSG00000022303.10	ENSMUST00000227368.2	1825	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	9.0921211313239	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTGCCTTGATCATGTGA	NA	False	NA	6	True	NA	NA	NA	39609327	39624330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_39609364_39617579_39618622_39622877_39623019_39623724
transcript_18492.nic	chr15	+	2044	3	ISM	ENSMUSG00000022303.10	ENSMUST00000022913.6	1997	4	8165	4	8153	0	3prime_fragment	FALSE	canonical	3	14	junction_1	5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTGCCTTGATCATGTGA	NA	False	NA	6	True	NA	NA	NA	39617492	39624330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_+_39618622_39622709_39623019_39623724
transcript_18493.nnic	chr15	-	1192	3	Intergenic	novelGene_4	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	12	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCTGAGTTCACTCAGAGA	NA	False	NA	NA	False	AGTAAA	-2	NA	39640731	39633461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Intergenic_chr15_-_39634502_39640454_39640539_39640663
transcript_18494.nic	chr15	-	738	2	ISM	ENSMUSG00000022304.14	ENSMUST00000110306.9	2110	10	72577	0	8358	0	3prime_fragment	FALSE	canonical	3	216	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGTGTCTGAGTTCCAT	NA	False	NA	NA	False	AATAAA	-22	NA	39648289	39646092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_-_39646506_39647964
transcript_18495.known	chr15	-	2110	10	FSM	ENSMUSG00000022304.14	ENSMUST00000110306.9	2110	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	67.0043300609265	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGTGTCTGAGTTCCAT	NA	False	NA	NA	False	AATAAA	-22	NA	39720866	39646092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_39646506_39647964_39648111_39656622_39656831_39687561_39687705_39690259_39690402_39691370_39691528_39705318_39705509_39707253_39707434_39710004_39710164_39720494
transcript_18496.known	chr15	-	1976	1	FSM	ENSMUSG00000115739.2	ENSMUST00000228464.2	1976	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACATTCTCTTGTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	39878174	39876198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_39876200_39878200
transcript_185.known	SIRV6002	+	6000	1	FSM	SIRV6002A	SIRV6002	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6002_+_0_6000
transcript_1850.known	chr1	+	2670	1	FSM	ENSMUSG00000070732.3	ENSMUST00000190965.2	2670	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATGAAGAAAAAAAAAAAAAA	4250	False	NA	NA	False	TATAAA	-36	NA	91072810	91075480	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_91072800_91075500
transcript_18500.nnic	chr15	+	595	3	NNC	ENSMUSG00000115367.2	novel	1064	3	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	1	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTTCTGCCGTCACCTG	NA	False	NA	NA	False	AATAAA	-18	NA	40025985	40031472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_40026222_40028595_40028677_40031194
transcript_18501.known	chr15	+	798	6	FSM	ENSMUSG00000022307.17	ENSMUST00000166917.3	798	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	110.164241022212	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTAGCAGGACATCGGCCC	NA	False	NA	NA	False	AATAAA	-15	NA	41694327	41722704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_41694526_41713854_41713981_41714770_41714924_41716717_41716814_41718316_41718391_41722553
transcript_18503.known	chr15	+	4599	17	FSM	ENSMUSG00000022307.17	ENSMUST00000110297.10	4599	17	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_11	113.448208860916	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTGGATTTTTTCAAT	NA	False	NA	NA	False	AATAAA	-21	NA	41310877	41724444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_41310986_41398965_41399124_41516860_41517058_41660869_41660953_41663866_41663975_41664977_41665092_41676969_41677123_41680477_41680663_41683234_41683975_41686722_41686892_41689285_41689449_41712065_41712147_41713854_41713981_41714770_41714924_41716717_41716814_41718316_41718391_41722553
transcript_18512.known	chr15	-	1506	13	FSM	ENSMUSG00000022336.4	ENSMUST00000022960.4	1506	13	0	0	0	0	multi-exon	TRUE	canonical	3	2495	junction_1	136.260065887095	1699	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTATTTTGCTTGAATT	2663	False	NA	-22	True	AATAAA	-16	NA	43146115	43113453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_43113634_43114875_43115011_43115600_43115704_43124455_43124566_43125994_43126097_43126604_43126732_43128896_43129022_43129529_43129656_43134274_43134380_43135671_43135715_43138632_43138751_43141703_43141819_43145998
transcript_1852.known	chr1	+	1154	11	FSM	ENSMUSG00000034343.15	ENSMUST00000059743.12	1154	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	126.177692164661	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTGGCAATAAGAAACCC	311	False	NA	NA	False	NA	NA	NA	91178032	91213462	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_91178160_91181481_91181550_91181981_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
transcript_18526.known	chr15	+	1231	11	FSM	ENSMUSG00000022337.8	ENSMUST00000022962.8	1231	11	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_9	74.0384359640315	477	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATGAAAATTCTAGTTTC	NA	False	NA	10	True	AATAAA	-20	NA	43340624	43391159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_43340722_43355565_43355680_43358135_43358201_43358559_43358646_43360456_43360515_43371040_43371127_43371257_43371318_43374210_43374293_43375095_43375207_43377140_43377246_43390792
transcript_18530.known	chr15	-	2600	10	FSM	ENSMUSG00000038736.11	ENSMUST00000038719.8	2600	10	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_5	53.0869308043159	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTCATTGTTTAGATTGGT	NA	False	NA	71	True	AATAAA	-19	NA	44291703	44239466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_44240083_44243455_44243616_44251864_44251991_44259906_44260052_44263415_44263621_44264677_44264861_44268744_44268926_44269205_44269389_44284114_44284270_44291057
transcript_18532.known	chr15	-	5077	10	FSM	ENSMUSG00000038736.11	ENSMUST00000227843.2	5077	10	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_5	79.6338844685826	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTCTTGTCTGGA	NA	False	NA	NA	False	AATAAA	-23	NA	44291269	44236558	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_44240083_44243455_44243616_44251864_44251991_44259906_44260052_44263415_44263624_44264677_44264861_44268744_44268926_44269205_44269389_44284114_44284270_44291057
transcript_18541.known	chr15	+	654	6	FSM	ENSMUSG00000022338.9	ENSMUST00000228130.2	654	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	414.684747730128	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGACTCTGTTTATTACTG	9651	False	NA	40	True	AATAAA	-42	NA	44291522	44299290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_44291567_44292955_44293033_44294086_44294191_44295833_44295905_44297294_44297370_44299007
transcript_18544.known	chr15	+	502	5	FSM	ENSMUSG00000022338.9	ENSMUST00000227425.2	502	5	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_3	351.373732655132	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGATTTATTTCTGAAA	9632	False	NA	-59	True	NA	NA	NA	44291503	44299106	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297249_44297370_44299007
transcript_18546.known	chr15	+	2547	5	FSM	ENSMUSG00000022338.9	ENSMUST00000226336.2	2547	5	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_3	350.174510066053	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGATTTAAAAAATGGCA	9639	False	NA	NA	False	TATAAA	-20	NA	44291510	44301205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_44291639_44292955_44293033_44295833_44295905_44297296_44297370_44299007
transcript_18551.known	chr15	+	558	5	FSM	ENSMUSG00000022338.9	ENSMUST00000226827.2	558	5	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_1	272.243457221657	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCAATTTTTTTATTTTG	9616	False	NA	13	True	AATAAA	-15	NA	44291487	44299263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_44291567_44292955_44293033_44295833_44295905_44297294_44297370_44299007
transcript_18557.known	chr15	+	1945	7	FSM	ENSMUSG00000022339.10	ENSMUST00000227691.2	1945	7	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	13.0894359440479	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAACTGATTTTCTGTGGC	NA	False	NA	NA	False	ATTAAA	-19	NA	44482570	44504911	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_44482766_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
transcript_18561.known	chr15	+	1931	7	FSM	ENSMUSG00000022339.10	ENSMUST00000226165.2	1931	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	30.3076814612328	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCCTTCAGTTTTCATT	NA	False	NA	NA	False	NA	NA	NA	44482835	44504624	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_44483304_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
transcript_18563.known	chr15	+	1613	7	FSM	ENSMUSG00000022339.10	ENSMUST00000022964.9	1613	7	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	29.9467119322899	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTGTATATCCTTATT	NA	False	NA	12	True	ATTAAA	-22	NA	44482986	44504422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_44483339_44487838_44487937_44490952_44491032_44491771_44491931_44493500_44493609_44500159_44500252_44503697
transcript_18572.known	chr15	-	1295	8	FSM	ENSMUSG00000022312.12	ENSMUST00000022925.10	1295	8	0	0	0	0	multi-exon	FALSE	canonical	3	1820	junction_5	77.7200628104822	2811	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGTGTATTTATGGTG	NA	False	NA	-12	True	AATAAA	-24	NA	51728919	51649953	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_51650222_51651301_51651435_51653388_51653510_51659783_51659934_51661008_51661109_51662587_51662756_51705863_51706021_51728721
transcript_18582.known	chr15	+	2921	3	FSM	ENSMUSG00000022313.11	ENSMUST00000137116.3	2921	3	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_1	13	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTTTAATAATAGTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	51740824	51748010	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_51741107_51744411_51744587_51745546
transcript_18583.known	chr15	+	779	3	FSM	ENSMUSG00000022313.11	ENSMUST00000136129.2	779	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	172.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTGCATCTTCAGTTGTT	NA	False	NA	21	True	AGTAAA	-18	NA	51741137	51746079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_51741209_51744411_51744587_51745546
transcript_18585.known	chr15	-	3956	14	FSM	ENSMUSG00000022314.11	ENSMUST00000022927.11	3956	14	0	0	0	0	multi-exon	FALSE	canonical	3	565	junction_13	70.6746022859982	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTTAGACCCGGGAAGA	NA	False	NA	NA	False	NA	NA	NA	51855143	51825635	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_51827644_51828350_51828435_51829977_51830128_51831183_51831333_51831746_51831919_51833316_51833541_51835141_51835265_51835597_51835724_51836481_51836689_51837232_51837340_51839494_51839595_51841440_51841571_51845924_51846100_51854942
transcript_18587.known	chr15	+	1348	2	FSM	ENSMUSG00000068522.5	ENSMUST00000090025.5	1348	2	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTTTCTAGTGGTCAT	NA	False	NA	16	True	AATAAA	-27	NA	51903502	51909118	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_51903927_51908194
transcript_18588.known	chr15	+	1007	4	FSM	ENSMUSG00000038622.9	ENSMUST00000037115.9	1007	4	0	0	0	0	multi-exon	FALSE	canonical	3	604	junction_2	11.2644968324772	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTCAGTTTTACTTTCA	NA	False	NA	NA	False	AATAAA	-21	NA	52575837	52593960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_52576083_52582741_52582901_52584419_52584525_52593462
transcript_18589.known	chr15	-	9019	5	FSM	ENSMUSG00000058656.14	ENSMUST00000078673.14	9019	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.29903810567666	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACCGTGTAAAAGTGTTT	NA	False	NA	-10	True	ATTAAA	-14	NA	53765926	53317205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_53325613_53521745_53521887_53583010_53583141_53723499_53723679_53765764
transcript_1859.known	chr1	+	5654	10	FSM	ENSMUSG00000034343.15	ENSMUST00000171165.8	5654	10	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	86.300651614781	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGGTGTTTTAGTTAGGA	337	False	NA	NA	False	NA	NA	NA	91178058	91218059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_91178160_91181984_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
transcript_18592.known	chr15	-	5031	26	FSM	ENSMUSG00000037343.9	ENSMUST00000041733.9	5031	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_25	41.14333967971	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTCTGCCTTTGTTTTTCT	NA	False	NA	-6	True	AATAAA	-18	NA	54935548	54878526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_54879998_54885597_54885721_54890567_54890674_54891713_54891944_54894441_54894552_54897558_54897629_54899913_54900054_54901634_54901829_54903758_54903870_54906504_54906646_54909131_54909385_54910813_54910880_54911621_54911732_54912022_54912138_54912790_54912946_54915511_54915648_54917629_54917716_54919182_54919283_54922194_54922309_54923298_54923484_54925448_54925681_54926388_54926531_54927983_54928103_54929255_54929417_54934788_54934844_54935242
transcript_18595.known	chr15	-	1324	9	FSM	ENSMUSG00000022422.14	ENSMUST00000023059.13	1324	9	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_7	27.4268914571083	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTATCCCTGACTTCTTT	NA	False	NA	-5	True	AATAAA	-17	NA	54953887	54939494	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
transcript_18596.known	chr15	-	1499	10	FSM	ENSMUSG00000022422.14	ENSMUST00000110231.2	1499	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	97.4314573887145	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTTATCCCTGACTTC	NA	False	NA	-8	True	AATAAA	-14	NA	54953876	54939497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_54939662_54943588_54943738_54945562_54945718_54946441_54946495_54946800_54946990_54947444_54947584_54950148_54950240_54950997_54951133_54952350_54952520_54953621
transcript_18597.known	chr15	+	8547	9	FSM	ENSMUSG00000022419.17	ENSMUST00000096433.10	8547	9	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_7	6.05702071979286	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAAGTGCTGACTTTTTCTC	NA	False	NA	10	True	AATAAA	-21	NA	54975712	55122667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_54976016_55012736_55012916_55015183_55015308_55044260_55044440_55072126_55072313_55075587_55075723_55078883_55078955_55081564_55081670_55115402
transcript_186.known	SIRV6003	+	6000	1	FSM	SIRV6003A	SIRV6003	6000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	6000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV6003_+_0_6000
transcript_18601.known	chr15	+	3144	22	FSM	ENSMUSG00000022369.14	ENSMUST00000022998.14	3144	22	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_14	23.9707872097639	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGGATTGCATGTCCT	NA	False	NA	NA	False	AATAAA	-17	NA	55420803	55489819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_55421134_55421896_55421978_55426098_55426173_55426332_55426485_55428008_55428068_55429589_55429735_55430573_55430692_55432441_55432556_55434690_55434786_55436291_55436365_55440843_55440962_55449706_55449881_55452051_55452160_55460737_55460900_55466579_55466698_55470039_55470196_55474333_55474430_55480877_55481145_55483033_55483272_55484018_55484133_55488786_55488853_55489533
transcript_18607.known	chr15	-	1223	7	FSM	ENSMUSG00000022370.14	ENSMUST00000172387.8	1223	7	0	0	0	0	multi-exon	FALSE	canonical	3	905	junction_4	55.6070039553372	566	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	False	NA	0	True	AATAAA	-20	NA	55421144	55397489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55411537_55411632_55418715_55418840_55420653
transcript_18608.known	chr15	-	730	6	FSM	ENSMUSG00000022370.14	ENSMUST00000164542.8	730	6	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	366.126754007407	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAATGTCTCTTACTGAAA	NA	False	NA	0	True	AATAAA	-20	NA	55420745	55397489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_55397734_55402425_55402548_55403518_55403606_55406719_55406781_55418715_55418840_55420653
transcript_18611.known	chr15	-	3175	8	FSM	ENSMUSG00000022365.7	ENSMUST00000022993.7	3175	8	0	0	0	0	multi-exon	TRUE	canonical	3	365	junction_5	42.5977866628236	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAAAGATGGTATGTGAG	NA	False	NA	NA	False	NA	NA	NA	57755844	57732897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_57735303_57738892_57739004_57740813_57740867_57741880_57741977_57742444_57742472_57743395_57743461_57746830_57746943_57755538
transcript_18616.nic	chr15	+	3473	22	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_18	60.8888806130719	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCTGAACTGTCTTC	NA	False	NA	8	True	AATAAA	-15	NA	57775627	57833457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57825464_57825660_57827199_57827321_57831304_57831401_57833119
transcript_18617.known	chr15	+	3311	21	FSM	ENSMUSG00000022364.15	ENSMUST00000022992.13	3311	21	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_2	36.9403234961471	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCTGAACTGTCTTC	NA	False	NA	8	True	AATAAA	-15	NA	57775594	57833457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
transcript_18620.nic	chr15	+	3152	20	NIC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_2	59.3076396586785	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCTGAACTGTCTTC	NA	False	NA	8	True	AATAAA	-15	NA	57775637	57833457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_57775788_57779365_57779513_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732_57821826_57824238_57824380_57827199_57827321_57831304_57831401_57833119
transcript_18625.nic	chr15	+	3546	17	ISM	ENSMUSG00000022364.15	ENSMUST00000110175.9	3468	18	8	-1	3	1	intron_retention	FALSE	canonical	3	200	junction_2	25.2003689209107	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTCTGCATGTAATTGA	NA	False	NA	3	True	AATAAA	-17	NA	57775637	57822799	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_+_57775788_57779365_57779513_57783326_57783443_57786352_57786532_57795927_57796080_57799486_57799647_57801297_57801499_57804018_57804196_57805765_57805846_57805928_57806076_57812344_57812479_57814370_57814505_57815028_57815209_57816151_57816385_57816883_57817037_57818668_57818805_57821732
transcript_1863.known	chr1	+	1110	10	FSM	ENSMUSG00000034343.15	ENSMUST00000191368.7	1110	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	94.7511360236793	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGATGCACACTCTCTTA	365	False	NA	NA	False	TATAAA	-6	NA	91178086	91213495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_91178160_91181936_91182116_91189988_91190019_91192939_91193006_91202971_91203040_91204107_91204179_91205982_91206041_91207226_91207260_91211668_91211732_91213026
transcript_18631.nnic	chr15	+	735	4	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	4685	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	150.923821844002	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCTGAACTGTCTTC	NA	False	NA	8	True	AATAAA	-15	NA	57826493	57833457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_57826674_57827199_57827321_57831304_57831401_57833119
transcript_18632.nic	chr15	+	842	3	ISM	ENSMUSG00000022364.15	ENSMUST00000161329.2	914	6	5104	6	5104	0	3prime_fragment	FALSE	canonical	3	284	junction_1	37.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCTGAACTGTCTTC	NA	False	NA	8	True	AATAAA	-15	NA	57826912	57833457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_+_57827321_57831304_57831401_57833119
transcript_18633.nnic	chr15	+	690	3	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	8594	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	173	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAAAGCTGAACTGTCTTC	NA	False	NA	8	True	AATAAA	-15	NA	57830402	57833457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_57830659_57831304_57831401_57833119
transcript_18634.nnic	chr15	+	719	2	NIC	ENSMUSG00000022364.15	novel	914	6	NA	NA	5132	1	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	9	True	AATAAA	-16	NA	57826940	57833458	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_57827321_57833119
transcript_18635.nnic	chr15	+	630	2	NNC	ENSMUSG00000022364.15	novel	3311	21	NA	NA	10878	1	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	0	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCTGAACTGTCTTCT	NA	False	NA	9	True	AATAAA	-16	NA	57832686	57833458	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_57832978_57833119
transcript_18636.known	chr15	+	2876	4	FSM	ENSMUSG00000051225.10	ENSMUST00000160942.8	2876	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	4.49691252107735	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGGACATAAATGTGAAACC	9213	False	NA	NA	False	NA	NA	NA	57848814	57874405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_57849938_57856302_57856471_57858609_57858735_57872945
transcript_18637.nnic	chr15	+	2165	3	NIC	ENSMUSG00000051225.10	novel	2876	4	NA	NA	-216	-311	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	1	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAAAACTGTTCCCTGGA	9488	False	NA	NA	False	NA	NA	NA	57849089	57874094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_57849938_57856302_57856471_57872945
transcript_18644.nnic	chr15	-	1465	6	NNC	ENSMUSG00000101892.2	novel	1341	6	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_4	316.693795329179	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCTCCCAGGTAATTTCA	NA	False	NA	-20	True	AATAAA	-29	NA	57897758	57885665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_57885960_57888669_57888803_57892009_57892441_57894352_57894497_57895291_57895476_57897479
transcript_18645.known	chr15	-	1341	6	FSM	ENSMUSG00000101892.2	ENSMUST00000100655.5	1341	6	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_4	117.266534015464	926	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTTCAGCTGCTCTCAG	NA	False	NA	-9	True	AATAAA	-40	NA	57897711	57885654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_57885960_57888669_57888803_57892009_57892441_57894352_57894497_57895379_57895476_57897479
transcript_18652.known	chr15	-	5684	28	FSM	ENSMUSG00000022360.9	ENSMUST00000038194.5	5684	28	0	0	0	0	multi-exon	TRUE	canonical	3	283	junction_25	31.7407623492731	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCGTTTCTAGTTCTTGT	NA	False	NA	-11	True	AATAAA	-20	NA	57998478	57957441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_57958968_57959972_57960102_57960647_57960782_57961754_57962145_57963106_57963251_57963362_57963486_57965772_57965933_57966593_57966791_57967826_57967963_57968872_57969059_57970120_57970308_57971476_57971592_57971698_57972014_57973343_57973435_57974512_57974673_57977565_57977655_57979067_57979243_57980163_57980280_57980633_57980743_57981740_57981846_57984337_57984456_57985848_57985999_57989137_57989226_57989443_57989547_57989944_57990111_57991604_57991652_57995588_57995738_57998202
transcript_18653.known	chr15	+	786	6	FSM	ENSMUSG00000022359.11	ENSMUST00000227142.2	786	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	23.3203773554375	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATATTGTTTGTTTGTT	2691	False	NA	NA	False	CATAAA	-13	NA	58004803	58018721	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58015992_58016142_58016975_58017101_58018534
transcript_18654.known	chr15	+	1383	6	FSM	ENSMUSG00000022359.11	ENSMUST00000067563.9	1383	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	11.5516232625549	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCTTTTGAAGAATCTG	2660	False	NA	27	True	AATAAA	-17	NA	58004772	58022050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58015992_58016142_58016975_58017101_58021297
transcript_18655.known	chr15	+	798	5	FSM	ENSMUSG00000022359.11	ENSMUST00000228761.2	798	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	18.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCCCAGCCTCAGACATAG	2675	False	NA	NA	False	NA	NA	NA	58004787	58021629	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58016975_58017101_58021297
transcript_18658.known	chr15	+	394	4	FSM	ENSMUSG00000022359.11	ENSMUST00000226889.2	394	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	30.9228430488243	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACCTACCAAGCCTGACA	2720	False	NA	NA	False	NA	NA	NA	58004832	58021395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_58004978_58011729_58011830_58014001_58014053_58021297
transcript_18660.nnic	chr15	+	1273	3	Antisense	novelGene_ENSMUSG00000022358.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	2	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCTTTTCTGTACCAG	NA	False	NA	NA	False	AATAAA	-17	NA	58024779	58044649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr15_+_58025076_58043176_58044054_58044549
transcript_18662.known	chr15	+	5560	24	FSM	ENSMUSG00000037119.5	ENSMUST00000037270.5	5560	24	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_5	31.8077875639983	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTGTGGAGAGTGTCTAA	NA	False	NA	16	True	AATAAA	-16	NA	58287316	58329589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_58287627_58292047_58292133_58293594_58293747_58295169_58295228_58296045_58296114_58296625_58296740_58298442_58298534_58298902_58298966_58301840_58301948_58302027_58302067_58302510_58302624_58303054_58303171_58304363_58304477_58304742_58304830_58306512_58306646_58313426_58313576_58314680_58314816_58315009_58315124_58319434_58319508_58320191_58320342_58321779_58321885_58322386_58322511_58324831_58324902_58326598
transcript_18676.known	chr15	-	915	12	FSM	ENSMUSG00000050891.11	ENSMUST00000228538.3	915	12	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_6	18.2181455270914	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58805576	58772822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58795753_58795818_58798284_58798335_58800532_58800599_58805527
transcript_18679.nic	chr15	-	899	11	NIC	ENSMUSG00000050891.11	novel	915	12	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_8	26.3417918904542	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTTCCTTTTTATGA	NA	False	NA	-1	True	ATTAAA	-16	NA	58805624	58772822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58788125_58788212_58792988_58793032_58793122_58793267_58798284_58798335_58800532_58800599_58805527
transcript_18683.known	chr15	-	1819	10	FSM	ENSMUSG00000050891.11	ENSMUST00000227540.2	1819	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	38.5140666943045	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTTGAGTTATCCTTGA	NA	False	NA	-3	True	AATAAA	-16	NA	58805587	58771779	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_58772920_58776582_58776710_58777589_58777661_58781421_58781499_58788000_58788042_58792988_58793032_58793122_58793267_58798284_58798335_58800532_58800599_58805527
transcript_18690.known	chr15	+	704	4	FSM	ENSMUSG00000022354.5	ENSMUST00000022980.5	704	4	0	0	0	0	multi-exon	FALSE	canonical	3	3308	junction_3	178.75557489364	1134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCTGTGCCTGAAGTGT	2816	False	NA	13	True	AATAAA	-14	NA	58805604	58811337	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_58805788_58808116_58808310_58809200_58809315_58811123
transcript_18692.known	chr15	-	4938	15	FSM	ENSMUSG00000022353.11	ENSMUST00000080371.8	4938	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	26.147150311033	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCAGGTCTCCTTCAGA	2745	False	NA	NA	False	AATAAA	-19	NA	58953838	58813082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_58815980_58817210_58817374_58817694_58817869_58819174_58819370_58823318_58823530_58825362_58825461_58826954_58827063_58828281_58828440_58836345_58836358_58840687_58840763_58842825_58842918_58844324_58844410_58926866_58926941_58930209_58930272_58953304
transcript_18693.known	chr15	+	2758	11	FSM	ENSMUSG00000022351.15	ENSMUST00000022977.14	2758	11	0	0	0	0	multi-exon	FALSE	canonical	3	657	junction_1	53.8835782033822	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTCTTTTGGTTTTTGTT	NA	False	NA	13	True	AATAAA	-18	NA	59186929	59203041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_59187979_59189644_59189898_59193162_59193344_59194684_59194782_59195462_59195577_59195655_59195828_59196310_59196407_59197883_59198027_59198418_59198516_59201588_59201677_59202573
transcript_187.known	SIRV7	-	889	6	FSM	SIRV7A	SIRV708	889	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1573.00102987887	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATCCTAAGAGATCGAC	NA	False	NA	NA	False	NA	NA	NA	147957	56037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV7_-_56098_70883_70988_78841_78909_78928_78964_114686_114961_147608
transcript_18701.known	chr15	-	4033	29	FSM	ENSMUSG00000022350.8	ENSMUST00000022976.6	4033	29	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_18	44.6203943487363	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTTGCCCTGCTTGTGA	NA	False	NA	-3	True	AGTAAA	-16	NA	59246016	59203845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_59204209_59205466_59205555_59206936_59207091_59209041_59209139_59210762_59210893_59211662_59211767_59212740_59212821_59212908_59213012_59213787_59213951_59215873_59215999_59217186_59217367_59218062_59218165_59218668_59218750_59220233_59220375_59221141_59221253_59221980_59222057_59222135_59222303_59223320_59223434_59224349_59224480_59227682_59227811_59231111_59231284_59232971_59233086_59235042_59235196_59238011_59238205_59239243_59239345_59240224_59240310_59241001_59241148_59241728_59242035_59245889
transcript_18702.known	chr15	+	1122	8	FSM	ENSMUSG00000059586.11	ENSMUST00000227173.2	1122	8	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_4	348.219025608766	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATAATCCTCAGCTCAGCA	NA	False	NA	4	True	AATAAA	-5	NA	59246133	59473521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59368625_59368704_59463545_59463647_59463986_59464094_59473188
transcript_18705.known	chr15	+	1054	7	FSM	ENSMUSG00000059586.11	ENSMUST00000079703.11	1054	7	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_4	74.7677886674618	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCATGGTCCTGTCTG	NA	False	NA	16	True	AATAAA	-17	NA	59246135	59473533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_59246205_59250716_59250888_59287873_59287981_59327161_59327316_59463545_59463647_59463986_59464094_59473188
transcript_1871.known	chr1	+	2202	12	FSM	ENSMUSG00000026307.13	ENSMUST00000027532.13	2202	12	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_11	10.6693350656825	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGAAGTGGCCTGGGC	NA	False	NA	15	True	ATTAAA	-24	NA	91226059	91248797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_91226171_91228249_91228363_91230490_91230592_91232995_91233177_91236035_91236164_91236372_91236538_91237518_91237626_91243210_91243248_91244785_91244870_91245313_91245414_91246759_91246836_91247798
transcript_18713.known	chr15	+	3074	3	FSM	ENSMUSG00000097493.4	ENSMUST00000180730.3	3074	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTGGTGAGTTCCTGTC	NA	False	NA	NA	False	AATAAA	-15	NA	60694119	60700499	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_60696633_60699180_60699212_60699969
transcript_1872.nnic	chr1	-	1395	13	NNC	ENSMUSG00000026309.15	novel	1368	12	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_11	180.948177817726	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGAGTGACTGGTCC	NA	False	NA	-8	True	AATAAA	-18	NA	91326484	91303552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316066_91316187_91318328_91318386_91318705_91318754_91318853_91318920_91326372
transcript_18723.nnic	chr15	+	1348	7	NIC	ENSMUSG00000097039.9	novel	1563	9	NA	NA	9	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_2	6.0736223860962	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGAAGTCATGATTGTCA	NA	False	NA	27	True	AATAAA	-35	NA	61909843	62121377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_61910051_61978996_61979315_62021087_62021202_62047315_62047398_62114022_62114151_62114282_62114411_62121006
transcript_18727.nic	chr15	+	1234	6	NIC	ENSMUSG00000097039.9	novel	1342	7	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_2	8.29457654133109	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGAAGTCATGATTGTCA	NA	False	NA	27	True	AATAAA	-35	NA	61909843	62121377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_61910051_61978996_61979315_62047315_62047398_62114022_62114151_62114282_62114411_62121006
transcript_1873.nic	chr1	-	1329	12	NIC	ENSMUSG00000026309.15	novel	1368	12	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	85	junction_9	124.787157635487	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGAGTGACTGGTCC	NA	False	NA	-8	True	AATAAA	-18	NA	91326484	91303552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316066_91316169_91318328_91318386_91318853_91318920_91326372
transcript_18730.nic	chr15	-	1911	14	NIC	ENSMUSG00000022378.15	novel	1896	13	NA	NA	57	0	combination_of_known_junctions	FALSE	canonical	3	121	junction_10	363.626149130341	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTGGTTTACTGAG	NA	False	NA	-4	True	AATAAA	-22	NA	63932122	63802790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63829433_63829517_63842778_63842818_63894418_63894470_63932043
transcript_18734.known	chr15	-	1896	13	FSM	ENSMUSG00000022378.15	ENSMUST00000228226.2	1896	13	0	0	0	0	multi-exon	FALSE	canonical	3	743	junction_12	159.721024150096	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGGCTTGGTTTACTG	NA	False	NA	-6	True	AATAAA	-20	NA	63932192	63802792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63894418_63894470_63932043
transcript_18735.nnic	chr15	-	1809	13	NIC	ENSMUSG00000022378.15	novel	1896	13	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	70	junction_12	311.438095775067	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTTGGTTTACTGAG	NA	False	NA	-4	True	AATAAA	-22	NA	63932335	63802790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_63803529_63807427_63807499_63809146_63809274_63810512_63810593_63811493_63811611_63813779_63813858_63815032_63815170_63816171_63816278_63821854_63821977_63828448_63828532_63842778_63842818_63894418_63894470_63932275
transcript_1874.known	chr1	-	1368	12	FSM	ENSMUSG00000026309.15	ENSMUST00000027534.13	1368	12	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_9	38.9197096809944	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATTTGAGTGACTGGTCC	NA	False	NA	-8	True	AATAAA	-18	NA	91326505	91303552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_91303805_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286_91312381_91312961_91313069_91314936_91315064_91316066_91316187_91318328_91318386_91318853_91318920_91326372
transcript_18740.known	chr15	+	5215	23	FSM	ENSMUSG00000015002.19	ENSMUST00000015146.16	5215	23	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_16	48.5493912261498	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTGCATTTTTATTATAG	NA	False	NA	17	True	AATAAA	-24	NA	65658888	65745665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_65659096_65687183_65687261_65690281_65690410_65691568_65691720_65696462_65696585_65701575_65701726_65709283_65709422_65714490_65714570_65717757_65717894_65719996_65720159_65721611_65721727_65722972_65723025_65724809_65724983_65725379_65725456_65726477_65726640_65727264_65727397_65728370_65728439_65729312_65729441_65733500_65733593_65737726_65737776_65738572_65738677_65739118_65739169_65743001
transcript_18746.known	chr15	-	480	1	FSM	ENSMUSG00000092454.2	ENSMUST00000173338.2	480	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAGAAGCGCTCTTGATG	NA	False	NA	NA	False	NA	NA	NA	65800782	65800302	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_65800300_65800800
transcript_18747.known	chr15	-	2084	12	FSM	ENSMUSG00000022375.7	ENSMUST00000023006.7	2084	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.445361771415123	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTCAGGGTGGGGTGAC	NA	False	NA	NA	False	NA	NA	NA	66372759	66251706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_66252421_66268829_66268916_66309443_66309540_66310204_66310275_66314006_66314073_66319442_66319521_66321291_66321484_66325917_66326145_66341665_66341839_66353089_66353168_66361321_66361490_66372623
transcript_18748.known	chr15	-	2889	16	FSM	ENSMUSG00000005125.14	ENSMUST00000005256.14	2889	16	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_13	7.67854152818099	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGTCTTTTCCTCTCC	NA	False	NA	0	True	AATAAA	-18	NA	66841489	66801166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_66802958_66805712_66805765_66808101_66808138_66809046_66809095_66809715_66809768_66810491_66810549_66811991_66812096_66813860_66813918_66814913_66815001_66815852_66815914_66816624_66816688_66818280_66818402_66820227_66820334_66831210_66831247_66832320_66832402_66841352
transcript_18751.known	chr15	+	483	1	FSM	ENSMUSG00000068397.5	ENSMUST00000089785.5	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1077	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	68181667	68182150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_68181700_68182200
transcript_18752.known	chr15	-	4048	22	FSM	ENSMUSG00000047921.18	ENSMUST00000089770.11	4048	22	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	34.9692446667405	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTGTTGATTTCAGACT	NA	False	NA	-1	True	AATAAA	-21	NA	72933053	72461468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_72462012_72462464_72462689_72557131_72557223_72565352_72565507_72608624_72608736_72629064_72629208_72775405_72775531_72797354_72797508_72808810_72808975_72813708_72813842_72817907_72818035_72820638_72820725_72824822_72824969_72835408_72835536_72871820_72871965_72884654_72884872_72897810_72897937_72903370_72903493_72922443_72922573_72924010_72924157_72929770_72930364_72932809
transcript_18753.known	chr15	+	871	3	FSM	ENSMUSG00000068391.9	ENSMUST00000089765.9	871	3	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_2	8	172	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGCTTCATTGAAGTGG	NA	False	NA	7	True	ATTAAA	-18	NA	72962240	72965924	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_72962433_72964681_72964809_72965372
transcript_18755.known	chr15	+	1680	6	FSM	ENSMUSG00000059895.14	ENSMUST00000230177.2	1680	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	34.6028900527109	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTGTGAAGAGTGTTAT	NA	False	NA	20	True	AATAAA	-14	NA	73596646	73629076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_73596698_73622977_73623877_73625604_73625698_73627142_73627274_73627876_73627952_73628645
transcript_18756.known	chr15	+	3260	6	FSM	ENSMUSG00000059895.14	ENSMUST00000053232.8	3260	6	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	28.8124972885031	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGAGTGCTCTACTGCAAGT	NA	False	NA	NA	False	NA	NA	NA	73620222	73630615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_73620315_73622977_73623877_73625604_73625698_73627142_73627274_73627876_73627952_73628645
transcript_18757.known	chr15	-	390	1	FSM	ENSMUSG00000083380.2	ENSMUST00000120938.2	390	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	543	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGGCAAGAATGACTATT	NA	False	NA	NA	False	NA	NA	NA	73681745	73681355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_73681400_73681700
transcript_18758.known	chr15	-	3054	3	FSM	ENSMUSG00000022602.15	ENSMUST00000110009.4	3054	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	19	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTATGTGCCATTTCT	NA	False	NA	0	True	AATAAA	-14	NA	74544419	74540931	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_74541843_74542028_74542166_74542413
transcript_18759.known	chr15	-	5853	2	FSM	ENSMUSG00000046380.4	ENSMUST00000050234.4	5853	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCCTTGTCATCTGTGAG	NA	False	NA	NA	False	AGTAAA	-41	NA	74581384	74574149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_74579714_74581095
transcript_18760.known	chr15	+	860	3	FSM	ENSMUSG00000022598.7	ENSMUST00000023265.5	860	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAACCTGTGTCCTTAAG	NA	False	NA	NA	False	AATAAA	-19	NA	74586687	74588918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_74586756_74587869_74587978_74588234
transcript_18761.known	chr15	+	1784	2	FSM	ENSMUSG00000056665.3	ENSMUST00000070923.3	1784	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTGCACCTGGCCTGTCTT	4640	False	NA	NA	False	NA	NA	NA	74593052	74596488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_74593657_74595308
transcript_18763.known	chr15	-	513	3	FSM	ENSMUSG00000022595.8	ENSMUST00000023260.5	513	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	1.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGAGTCTCGTTTCTGG	NA	False	NA	NA	False	AATACA	-19	NA	74606178	74604095	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_74604389_74604815_74604936_74606078
transcript_18764.known	chr15	-	791	4	FSM	ENSMUSG00000044678.12	ENSMUST00000060301.6	791	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_3	10.2740233382816	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCTTGGTTTGACTTCTG	776	False	NA	-2	True	ATTAAA	-18	NA	74671835	74668722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_74669121_74670383_74670483_74671267_74671345_74671618
transcript_18766.known	chr15	+	2068	5	FSM	ENSMUSG00000022587.15	ENSMUST00000188866.7	2068	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	238.900606947743	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTGGCCCTTAGACTTT	7785	False	NA	NA	False	NA	NA	NA	74826899	74831752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_74827185_74827415_74827567_74829625_74829727_74830117_74830238_74830341
transcript_1877.known	chr1	-	626	6	FSM	ENSMUSG00000026309.15	ENSMUST00000190747.7	626	6	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	212.053389503681	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGTTGTTGGAAGGTAAG	NA	False	NA	-17	True	AATAAA	-22	NA	91312348	91301586	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_91301739_91304039_91304122_91306187_91306308_91309572_91309695_91311025_91311114_91312286
transcript_18770.known	chr15	+	815	1	FSM	ENSMUSG00000022587.15	ENSMUST00000191439.2	815	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAAAAC	8417	False	NA	NA	False	NA	NA	NA	74827531	74828346	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_74827500_74828300
transcript_18771.known	chr15	+	1122	4	FSM	ENSMUSG00000022587.15	ENSMUST00000191436.7	1122	4	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_1	144.768781165001	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8387	False	NA	27	True	AATAAA	-15	NA	74827501	74831180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_74827567_74829628_74829727_74830117_74830238_74830341
transcript_18772.known	chr15	+	1211	3	FSM	ENSMUSG00000022587.15	ENSMUST00000188503.2	1211	3	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_1	177	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTATGTCCTGGTTGT	8402	False	NA	27	True	AATAAA	-15	NA	74827516	74831180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_74827567_74829628_74829727_74830117
transcript_18773.known	chr15	-	862	4	FSM	ENSMUSG00000075602.11	ENSMUST00000186526.7	862	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	38.2738669184195	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATAAACCCTTTGTTCTCC	9611	False	NA	-25	True	NA	NA	NA	74869777	74866747	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_74867329_74868300_74868418_74869383_74869467_74869696
transcript_18774.known	chr15	-	955	4	FSM	ENSMUSG00000075602.11	ENSMUST00000187994.7	955	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	7.54247233265651	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAGTTCTCCATTTTTC	9508	False	NA	-4	True	AATAAA	-15	NA	74869880	74866726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_74867329_74868300_74868418_74869383_74869467_74869727
transcript_18775.known	chr15	-	853	4	FSM	ENSMUSG00000075602.11	ENSMUST00000187171.2	853	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	37.3452361977624	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGTCCTGCAATGTTCC	9552	False	NA	-77	True	NA	NA	NA	74869836	74866799	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_74867329_74868300_74868418_74869383_74869482_74869727
transcript_18776.nnic	chr15	-	870	4	NNC	ENSMUSG00000068348.5	novel	408	3	NA	NA	-297	386	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	34.9221356098901	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAAGTCTCTGTTTTTCT	1055	False	NA	-5	True	AATAAA	-16	NA	75110914	75107059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_75107668_75109440_75109558_75110548_75110631_75110851
transcript_18777.nnic	chr15	-	881	4	NNC	ENSMUSG00000068348.5	novel	408	3	NA	NA	-339	386	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	32.5678778348646	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAAGTCTCTGTTTTTCT	1013	False	NA	-5	True	AATAAA	-16	NA	75110956	75107059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_75107668_75109440_75109558_75110548_75110631_75110882
transcript_1878.known	chr1	-	1335	4	FSM	ENSMUSG00000067071.9	ENSMUST00000086851.2	1335	4	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	18.4932420089069	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGTGTCCAATGTGTG	NA	False	NA	-1	True	AATAAA	-35	NA	91340944	91339204	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_91340205_91340442_91340525_91340614_91340702_91340778
transcript_18780.nnic	chr15	-	1027	4	Fusion	ENSMUSG00000068348.5_ENSMUSG00000099467.2	novel	408	3	NA	NA	-18097	386	multi-exon	TRUE	non_canonical	0	0	junction_2	35.8267435801184	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAAGTCTCTGTTTTTCT	NA	False	NA	-5	True	AATAAA	-16	NA	75187045	75107059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr15_-_75107668_75109440_75109558_75168878_75168981_75186845
transcript_18781.nnic	chr15	-	976	4	Fusion	ENSMUSG00000068348.5_ENSMUSG00000099467.2	novel	408	3	NA	NA	-18046	386	multi-exon	TRUE	non_canonical	0	0	junction_2	35.8267435801184	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAAGTCTCTGTTTTTCT	NA	False	NA	-5	True	AATAAA	-16	NA	75186994	75107059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr15_-_75107668_75109440_75109558_75168878_75168992_75186856
transcript_18782.nnic	chr15	-	977	3	Fusion	ENSMUSG00000101289.2_ENSMUSG00000068348.5	novel	408	3	NA	NA	-182	386	multi-exon	FALSE	canonical	0	0	junction_2	38	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAAGTCTCTGTTTTTCT	NA	False	NA	-5	True	AATAAA	-16	NA	75186995	75107059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr15_-_75107668_75109440_75109558_75186743
transcript_18783.nnic	chr15	-	977	3	Fusion	ENSMUSG00000053168.7_ENSMUSG00000068348.5	novel	408	3	NA	NA	106	386	multi-exon	FALSE	canonical	1	8	junction_2	34	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAAGTCTCTGTTTTTCT	NA	False	NA	-5	True	AATAAA	-16	NA	75303467	75107059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr15_-_75107668_75109440_75109558_75303215
transcript_18784.nnic	chr15	+	909	4	NNC	ENSMUSG00000022583.13	novel	818	3	NA	NA	-62	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	3.74165738677394	12	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCAAGATCTCAGTTTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	75140207	75144084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_75140299_75140550_75140649_75141628_75141746_75143481
transcript_18786.known	chr15	+	3540	3	FSM	ENSMUSG00000047003.16	ENSMUST00000161785.8	3540	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGCTCTGTTGGGTT	NA	False	NA	17	True	AGTAAA	-17	NA	75488527	75497149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_75488670_75489892_75491541_75495399
transcript_1879.known	chr1	-	1398	3	FSM	ENSMUSG00000067071.9	ENSMUST00000132188.8	1398	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	13.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGTGTCCAATGTGTG	NA	False	NA	-1	True	AATAAA	-35	NA	91340930	91339204	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_91340205_91340442_91340525_91340614
transcript_18790.known	chr15	-	1903	14	FSM	ENSMUSG00000000934.10	ENSMUST00000000958.9	1903	14	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	11.6872458678823	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTTGTCACTGTGAC	NA	False	NA	-7	True	AATAAA	-11	NA	75550649	75528883	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_75529064_75529532_75529680_75535204_75535300_75535863_75535992_75537435_75537551_75538101_75538171_75539268_75539455_75539670_75539815_75540474_75540620_75541135_75541324_75541910_75542034_75546140_75546263_75547867_75547981_75550501
transcript_18793.known	chr15	+	3360	15	FSM	ENSMUSG00000022580.14	ENSMUST00000121137.9	3360	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.36578502309703	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCCATTACATGATAATCAG	NA	False	NA	NA	False	AATAAA	-16	NA	75576128	75587334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_75576324_75580019_75580136_75580837_75580967_75581085_75581162_75581862_75581941_75582303_75582429_75582514_75582682_75582836_75583031_75583402_75583560_75583639_75583748_75584105_75584301_75584850_75584928_75585067_75585215_75585298_75585461_75585900
transcript_18795.known	chr15	-	3362	12	FSM	ENSMUSG00000075600.4	ENSMUST00000100538.4	3362	12	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	44.618492997359	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCCTGTCTTGACTACC	NA	False	NA	-1	True	AATAAA	-19	NA	75713764	75626278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_75626800_75628471_75628816_75629388_75629574_75648838_75648971_75650914_75650985_75651128_75651288_75651362_75651406_75657301_75657487_75681376_75681528_75709315_75709513_75711104_75712414_75713698
transcript_18796.nnic	chr15	-	2129	11	NIC	ENSMUSG00000075600.4	novel	3362	12	NA	NA	-76	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_10	63.9518568925094	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCCTGTCTTGACTACC	NA	False	NA	-1	True	AATAAA	-19	NA	75713840	75626278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_75626800_75628471_75628816_75629388_75629574_75648838_75648971_75650914_75650985_75651128_75651288_75651362_75651406_75657301_75657487_75681376_75681528_75709315_75709513_75713698
transcript_18797.nnic	chr15	+	1569	11	NNC	ENSMUSG00000022575.6	novel	1792	11	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	17.3956891211587	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTGTTGAGGGGTACTG	NA	False	NA	15	True	AATAAA	-20	NA	75734122	75739257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_75734331_75735253_75735303_75735385_75735478_75736797_75736967_75737271_75737375_75737608_75737660_75737935_75738026_75738144_75738321_75738394_75738540_75738638_75738713_75738845
transcript_18798.known	chr15	+	1792	11	FSM	ENSMUSG00000022575.6	ENSMUST00000023238.6	1792	11	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	7.7614431647729	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTGTTGAGGGGTACTG	NA	False	NA	15	True	AATAAA	-20	NA	75734175	75739257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_75734331_75735253_75735478_75736092_75736286_75736797_75736967_75737271_75737375_75737608_75737660_75737935_75738026_75738144_75738321_75738394_75738540_75738638_75738713_75738845
transcript_1880.known	chr1	+	3474	15	FSM	ENSMUSG00000034292.14	ENSMUST00000047242.9	3474	15	0	0	0	0	multi-exon	FALSE	canonical	2	37	junction_5	6.41943795619752	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATGGACTGTCAAATTT	8984	False	NA	8	True	ATTAAA	-24	NA	91422415	91457029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_91422611_91425674_91425744_91427223_91427386_91428494_91428633_91428726_91429147_91433144_91433217_91435214_91435291_91446015_91446037_91447299_91447385_91447777_91447862_91448605_91448730_91448908_91448946_91450552_91450630_91453600_91453825_91455339
transcript_18801.known	chr15	+	406	2	FSM	ENSMUSG00000022575.6	ENSMUST00000230881.2	406	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCTAACTGGGCATGTTC	NA	False	NA	NA	False	NA	NA	NA	75734212	75735541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_75734331_75735253
transcript_18803.known	chr15	-	1898	13	FSM	ENSMUSG00000022574.8	ENSMUST00000023237.8	1898	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_8	7.1351049201972	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGTGTCGTTAGTTCAC	NA	False	NA	NA	False	CATAAA	-30	NA	75766330	75762804	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_75762910_75762997_75763106_75763195_75763351_75763428_75763532_75763632_75763714_75763811_75763897_75764190_75764332_75764405_75764603_75764953_75765070_75765154_75765286_75765401_75765485_75765568_75765697_75765865
transcript_1881.known	chr1	+	5826	5	FSM	ENSMUSG00000026311.17	ENSMUST00000027538.9	5826	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	8.86002257333467	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCTGGCTCTCTAGCTC	8955	False	NA	7	True	AATAAA	-19	NA	91468435	91487311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_91468587_91471872_91472020_91474649_91474953_91479775_91480162_91482472
transcript_18819.known	chr15	-	973	8	FSM	ENSMUSG00000055762.17	ENSMUST00000089680.10	973	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	1574.61569007443	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCCGCCTCTTGTGTTAC	NA	False	NA	-8	True	ATTAAA	-14	NA	75781168	75767338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75769074_75769132_75772980_75773102_75781093
transcript_18820.known	chr15	-	2312	8	FSM	ENSMUSG00000055762.17	ENSMUST00000154584.9	2312	8	0	0	0	0	multi-exon	FALSE	canonical	3	2715	junction_5	241.1927842695	2731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGCCGCTGCTCACCGACC	NA	False	NA	NA	False	NA	NA	NA	75781204	75766053	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773105_75781093
transcript_18824.known	chr15	-	896	7	FSM	ENSMUSG00000055762.17	ENSMUST00000116440.9	896	7	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_6	1385.14264207297	886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781146	75767336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772980_75773102_75781093
transcript_18829.known	chr15	-	824	7	FSM	ENSMUSG00000055762.17	ENSMUST00000023235.13	824	7	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_6	1073.10918984665	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTGTGGTGGAGGATGA	NA	False	NA	NA	False	NA	NA	NA	75781178	75767652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_75767776_75768091_75768314_75768488_75768590_75768668_75768769_75772539_75772612_75772980_75773102_75781093
transcript_1883.known	chr1	+	735	4	FSM	ENSMUSG00000026311.17	ENSMUST00000190484.7	735	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	11.2644968324772	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCCTCGCTGCCGCTGCC	8973	False	NA	NA	False	NA	NA	NA	91468453	91482546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_91468587_91471877_91472020_91479775_91480162_91482472
transcript_18837.known	chr15	-	704	5	FSM	ENSMUSG00000055762.17	ENSMUST00000151066.8	704	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1645.62410273428	437	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGCCTCTTGTGTTACTT	NA	False	NA	-6	True	ATTAAA	-16	NA	75781155	75767336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_75767441_75767580_75767776_75768091_75768314_75772980_75773102_75781093
transcript_18838.known	chr15	-	1339	6	FSM	ENSMUSG00000022571.10	ENSMUST00000053918.9	1339	6	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	15.2525407719501	260	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTGGACTTTAGTAGAG	NA	False	NA	-13	True	NA	NA	NA	75793409	75788325	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_75788929_75789085_75789179_75790100_75790314_75790521_75790702_75791077_75791143_75793224
transcript_18841.known	chr15	-	1405	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229951.2	1405	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	184.382889661704	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8946	False	NA	-22	True	AATAAA	-22	NA	75801575	75796524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798138_75798307_75798591_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
transcript_18844.known	chr15	-	1335	11	FSM	ENSMUSG00000022570.8	ENSMUST00000023231.7	1335	11	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_10	87.2147349935778	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGGACTCAGAAGCTGGG	8919	False	NA	-29	True	AATAAA	-15	NA	75801602	75796531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801501
transcript_18845.known	chr15	-	1355	11	FSM	ENSMUSG00000022570.8	ENSMUST00000229641.2	1355	11	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_10	74.8304750753328	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8840	False	NA	-22	True	AATAAA	-22	NA	75801681	75796524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798945_75800277_75800393_75800740_75800899_75801567
transcript_1885.known	chr1	-	2020	10	FSM	ENSMUSG00000026260.13	ENSMUST00000027478.7	2020	10	0	0	0	0	multi-exon	FALSE	canonical	3	1166	junction_5	87.5025220095095	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCCCTGGTAGCACTGGGC	NA	False	NA	1	True	NA	NA	NA	92401582	92366731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_92367630_92379732_92379842_92388101_92388188_92390012_92390068_92390799_92390880_92392082_92392205_92395102_92395190_92397584_92397801_92398538_92398708_92401384
transcript_18851.known	chr15	-	1223	10	FSM	ENSMUSG00000022570.8	ENSMUST00000229289.2	1223	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	159.308071761587	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGAAGCTGGGCCAGCCT	8885	False	NA	-22	True	AATAAA	-22	NA	75801636	75796524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_75796844_75797133_75797234_75797431_75797512_75797641_75797709_75797977_75798043_75798172_75798307_75798647_75798722_75798815_75798973_75800740_75800899_75801567
transcript_18852.known	chr15	+	2486	2	FSM	ENSMUSG00000050846.10	ENSMUST00000037260.8	2486	2	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCTGTGTAATTGGCATA	NA	False	NA	10	True	AATAAA	-16	NA	75812800	75821249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_75813009_75818971
transcript_18854.known	chr15	+	1803	4	FSM	ENSMUSG00000034429.16	ENSMUST00000109966.8	1803	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	7.71722460186015	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAAGCCTGTTCTTCAGCC	NA	False	NA	11	True	AATAAA	-16	NA	75840971	75847598	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_75841254_75844930_75845058_75845390_75845505_75846318
transcript_18855.known	chr15	+	1703	4	FSM	ENSMUSG00000034429.16	ENSMUST00000109967.10	1703	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	16.779617264871	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGAGAAGCCTGTTCTTCA	NA	False	NA	8	True	AATAAA	-13	NA	75841027	75847595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_75841254_75844971_75845058_75845390_75845505_75846318
transcript_18856.known	chr15	-	2584	1	FSM	ENSMUSG00000098176.3	ENSMUST00000182172.2	2584	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCCGTTGTCTTGTCTTTT	NA	False	NA	NA	False	NA	NA	NA	75854304	75851720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_75851700_75854300
transcript_18857.known	chr15	-	439	2	FSM	ENSMUSG00000022568.18	ENSMUST00000229940.2	439	2	0	0	0	0	multi-exon	FALSE	canonical	3	498	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACCCCTCAGGAGTTCTG	8998	False	NA	NA	False	TTTAAA	-1	NA	75919669	75919147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_75919387_75919469
transcript_18860.known	chr15	-	1881	12	FSM	ENSMUSG00000002524.18	ENSMUST00000100527.13	1881	12	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_7	445.848082194703	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCTGTGTCTGAAATTGG	NA	False	NA	0	True	CATAAA	-25	NA	75952762	75942030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75946455_75946507_75947390_75947481_75947585_75947682_75949449_75949552_75952698
transcript_18863.known	chr15	-	1821	11	FSM	ENSMUSG00000002524.18	ENSMUST00000002599.11	1821	11	0	0	0	0	multi-exon	FALSE	canonical	3	1143	junction_7	140.604729650179	699	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGAAGTCCCTGTGTCT	NA	False	NA	-8	True	CATAAA	-17	NA	75952761	75942038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_75942477_75942597_75942834_75943030_75943167_75943314_75943506_75943588_75943803_75944081_75944175_75944255_75944418_75947390_75947481_75947585_75947682_75949449_75949552_75952698
transcript_18871.known	chr15	+	1725	7	FSM	ENSMUSG00000022564.8	ENSMUST00000023225.8	1725	7	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	10.0567832276971	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTGCTTCTCCTTGTCT	NA	False	NA	13	True	AATAAA	-14	NA	76130974	76134104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76131101_76132050_76132378_76132458_76132569_76132648_76132850_76132971_76133101_76133177_76133322_76133416
transcript_18872.nic	chr15	+	1961	7	NIC	ENSMUSG00000022564.8	novel	1725	7	NA	NA	-14	0	intron_retention	FALSE	canonical	3	13	junction_1	29.8533452434099	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTGCTTCTCCTTGTCT	NA	False	NA	13	True	AATAAA	-14	NA	76130949	76134104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_76131101_76131839_76132378_76132458_76132569_76132648_76132850_76132971_76133101_76133177_76133322_76133416
transcript_18877.known	chr15	+	1728	3	FSM	ENSMUSG00000034259.9	ENSMUST00000230512.2	1728	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	318	319	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACTGGACTAATGTCTT	947	False	NA	4	True	NA	NA	NA	76211664	76214873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76211868_76213229_76213437_76213555
transcript_18878.known	chr15	+	2107	12	FSM	ENSMUSG00000022561.14	ENSMUST00000023221.13	2107	12	0	0	0	0	multi-exon	TRUE	non_canonical	3	197	junction_6	31.5777932223483	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGGCCCGCTGTCTTCT	4713	False	NA	24	True	AATAAA	-27	NA	76215430	76219107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76215664_76216095_76216276_76216359_76216472_76216683_76216832_76216909_76217012_76217102_76217300_76217376_76217574_76217663_76217818_76217994_76218091_76218213_76218405_76218489_76218661_76218781
transcript_18886.known	chr15	+	1520	7	FSM	ENSMUSG00000022551.9	ENSMUST00000023210.8	1520	7	0	0	0	0	multi-exon	FALSE	canonical	3	4240	junction_5	258.32822575596	2411	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCCATGGTGTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	76227722	76230460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76227893_76228501_76228699_76228781_76228909_76229011_76229170_76229252_76229414_76229676_76229778_76229854
transcript_189.known	SIRV7	-	2498	5	FSM	SIRV7A	SIRV703	2498	5	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_2	1651.92015167199	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	TATAAA	-22	NA	147918	1000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV7_-_2676_2993_3112_3809_3897_114680_114989_147608
transcript_1890.known	chr1	-	989	1	FSM	ENSMUSG00000026260.13	ENSMUST00000189582.2	989	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAAATCTATT	NA	False	NA	NA	False	NA	NA	NA	92401489	92400500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_92400500_92401500
transcript_18904.known	chr15	-	1734	9	FSM	ENSMUSG00000022552.17	ENSMUST00000023211.16	1734	9	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	14.1862609591111	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTTCTGTTCTTGGA	8113	False	NA	-3	True	ATTAAA	-16	NA	76235311	76231239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76231386_76231458_76231588_76231681_76231795_76231863_76232018_76232095_76232205_76232285_76232428_76232500_76232636_76234254_76234430_76234680
transcript_18918.known	chr15	-	1669	6	FSM	ENSMUSG00000022552.17	ENSMUST00000144816.9	1669	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	53.2450936706848	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGTGTTCTGTTCTTGG	8149	False	NA	-4	True	ATTAAA	-15	NA	76235275	76231240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76231386_76231458_76231588_76231681_76232205_76232285_76232428_76232500_76232636_76234680
transcript_1892.known	chr1	-	649	3	FSM	ENSMUSG00000073616.11	ENSMUST00000148508.2	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	285.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGCTTTTAGATGCA	NA	False	NA	-19	True	AATAAA	-30	NA	92569645	92564866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_92565126_92567408_92567482_92569328
transcript_18920.known	chr15	+	1743	9	FSM	ENSMUSG00000022553.17	ENSMUST00000161527.8	1743	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	277.590075471008	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGAACCTGGGAGTTTG	NA	False	NA	23	True	AATAAA	-15	NA	76235493	76238572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76235860_76236195_76236242_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
transcript_18924.known	chr15	+	1686	8	FSM	ENSMUSG00000022553.17	ENSMUST00000023212.15	1686	8	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_1	86.5157765487702	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAACCTGGGAGTTTGT	NA	False	NA	24	True	AATAAA	-16	NA	76235505	76238573	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76235860_76236619_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
transcript_18925.known	chr15	+	1651	8	FSM	ENSMUSG00000022553.17	ENSMUST00000160853.8	1651	8	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	163.413086179455	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAACCTGGGAGTTTGT	NA	False	NA	24	True	AATAAA	-16	NA	76235493	76238573	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76235860_76236666_76236753_76236845_76236975_76237046_76237213_76237337_76237460_76237540_76237661_76237785_76237921_76238046
transcript_1893.known	chr1	-	438	3	FSM	ENSMUSG00000073616.11	ENSMUST00000097642.4	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	610	junction_1	1	451	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGTGCTTTTAGATGCA	NA	False	NA	-19	True	AATAAA	-30	NA	92569707	92564866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_92565126_92567408_92567482_92569601
transcript_18931.known	chr15	+	1993	6	FSM	ENSMUSG00000022554.8	ENSMUST00000023213.8	1993	6	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	14.4858551697855	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGACTCTCCTGCAAGAG	3544	False	NA	NA	False	NA	NA	NA	76253097	76255637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76253770_76253851_76253953_76254055_76254155_76254361_76254454_76254531_76254655_76254731
transcript_1894.known	chr1	+	1314	2	FSM	ENSMUSG00000047067.8	ENSMUST00000060913.8	1314	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCGAGTTGCTCTTTATG	2855	False	NA	NA	False	AATAAA	-14	NA	92834702	92836157	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_92835146_92835286
transcript_18942.known	chr15	-	2491	16	FSM	ENSMUSG00000022557.12	ENSMUST00000023217.11	2491	16	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_11	43.9047453775405	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGGCTGGCAGCAGAGT	NA	False	NA	-34	True	AATAAA	-20	NA	76361477	76337188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76337579_76337662_76337771_76337843_76337929_76338016_76338306_76338377_76338559_76338651_76338785_76338873_76338944_76339017_76339099_76339169_76339332_76339407_76339621_76339695_76339798_76339881_76340000_76340071_76340227_76350971_76351053_76358947_76359122_76361328
transcript_1895.known	chr1	+	2902	12	FSM	ENSMUSG00000026270.12	ENSMUST00000027488.11	2902	12	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_4	15.6743724089108	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATTAGTCTTGTTCCAAA	2260	False	NA	NA	False	AATAAA	-14	NA	92862097	92875663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_92862737_92865666_92865799_92867044_92867242_92868004_92868223_92870203_92870346_92871021_92871189_92871400_92871664_92872416_92872620_92872738_92873001_92874495_92874696_92874936_92874983_92875230
transcript_18958.known	chr15	+	5268	44	FSM	ENSMUSG00000022558.17	ENSMUST00000096385.11	5268	44	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_5	19.8740490552834	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGTGACATTGTATCAAT	NA	False	NA	10	True	AATAAA	-16	NA	76264712	76337238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76264777_76274230_76274328_76276580_76276660_76278002_76278149_76285775_76285908_76286332_76286496_76286682_76286782_76292091_76292244_76292587_76292729_76293082_76293176_76297101_76297181_76298418_76298533_76305339_76305414_76307915_76308036_76311308_76311417_76311711_76311857_76312101_76312143_76312443_76312586_76312848_76312902_76313352_76313461_76313987_76314108_76314376_76314500_76316348_76316496_76316571_76316599_76317473_76317597_76317737_76317818_76318026_76318142_76318262_76318359_76318882_76318988_76319969_76320106_76320204_76320318_76321437_76321591_76327449_76327605_76330715_76330882_76331368_76331566_76334285_76334424_76334838_76334954_76335261_76335409_76335546_76335736_76336004_76336161_76336243_76336379_76336446_76336550_76336627_76336694_76337025
transcript_18959.known	chr15	+	2084	13	FSM	ENSMUSG00000022556.12	ENSMUST00000227478.2	2084	13	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_11	40.4687808343941	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACATACATACATACATATA	7144	False	NA	12	True	NA	NA	NA	76361644	76385172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76361918_76380169_76380279_76380652_76380790_76381035_76381161_76381818_76381895_76381967_76382030_76382151_76382249_76382353_76382491_76382621_76382892_76384147_76384254_76384330_76384397_76384466_76384537_76384616
transcript_1896.known	chr1	+	2171	11	FSM	ENSMUSG00000026270.12	ENSMUST00000152983.8	2171	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	36.1199390918645	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAATAATTTATGGATTAG	2717	False	NA	NA	False	AATAAA	-2	NA	92862554	92875651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_92862737_92865666_92865799_92867044_92867242_92868004_92868223_92870203_92870346_92871021_92871189_92871400_92871664_92872416_92872620_92874495_92874696_92874936_92874983_92875230
transcript_18962.known	chr15	-	1888	17	FSM	ENSMUSG00000022555.13	ENSMUST00000023214.11	1888	17	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_16	22.0368122411115	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCAGGGGTTGTGGAGGC	NA	False	NA	-5	True	AATAAA	-18	NA	76396151	76386214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76386589_76386691_76386755_76386843_76386932_76387018_76387085_76387158_76387272_76387353_76387399_76387473_76387516_76387589_76387629_76387717_76387822_76387905_76387981_76388064_76388173_76388314_76388421_76388548_76388602_76388685_76388772_76388865_76388907_76390765_76390854_76395754
transcript_18967.known	chr15	-	1710	9	FSM	ENSMUSG00000022559.9	ENSMUST00000023219.9	1710	9	0	0	0	0	multi-exon	TRUE	canonical	3	128	junction_8	22.8988946239769	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTATTTATTATATGT	NA	False	NA	NA	False	AATAAA	-21	NA	76422935	76419920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116_76422276_76422524
transcript_18968.nnic	chr15	-	1474	9	NNC	ENSMUSG00000022559.9	novel	1710	9	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_8	57.8916012906881	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATTTATTTATTATATGT	NA	False	NA	NA	False	AATAAA	-21	NA	76422972	76419920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116_76422276_76422797
transcript_18970.known	chr15	-	1953	8	FSM	ENSMUSG00000022559.9	ENSMUST00000230513.2	1953	8	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_7	19.025224930956	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGATTTATTTATTTATT	NA	False	NA	NA	False	AATAAA	-15	NA	76422935	76419926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922_76421987_76422116
transcript_18971.known	chr15	-	2091	7	FSM	ENSMUSG00000022559.9	ENSMUST00000229813.2	2091	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_6	11.5325625946708	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGATTTATTTATTT	NA	False	NA	NA	False	AATAAA	-12	NA	76422946	76419929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76420164_76420424_76420672_76420772_76421005_76421092_76421207_76421289_76421398_76421488_76421621_76421922
transcript_18973.known	chr15	+	5289	5	FSM	ENSMUSG00000022560.10	ENSMUST00000023220.10	5289	5	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_4	5.2618912949623	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTCCTGTACTCTGAGTG	NA	False	NA	NA	False	NA	NA	NA	76423031	76428808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76423396_76423582_76423803_76423893_76424780_76424871_76424996_76425113
transcript_18976.known	chr15	+	2889	3	FSM	ENSMUSG00000022560.10	ENSMUST00000230994.2	2889	3	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	0.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCACAATGTGTCCCTT	NA	False	NA	NA	False	AATAAA	-20	NA	76423163	76426330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76423396_76423582_76423803_76423893
transcript_18977.known	chr15	-	4518	37	FSM	ENSMUSG00000034022.9	ENSMUST00000071898.7	4518	37	0	0	0	0	multi-exon	TRUE	canonical	3	484	junction_25	49.8187687746518	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTGGTCATTGTGT	NA	False	NA	-2	True	TATAAA	-27	NA	76491791	76480005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76480133_76480208_76480348_76480419_76480550_76480615_76480772_76480850_76480899_76480976_76481044_76481116_76481294_76481388_76481542_76481630_76481773_76481845_76481931_76482009_76482101_76482175_76482293_76483002_76483156_76483233_76483378_76483467_76483558_76483655_76483863_76483939_76484115_76484189_76484327_76484412_76484592_76484667_76484810_76484881_76484993_76485137_76485228_76485305_76485387_76485462_76485538_76485603_76485699_76485773_76485826_76485926_76486050_76486121_76486210_76486327_76486422_76486520_76486632_76486708_76486849_76486990_76487138_76487233_76487386_76487501_76487583_76487711_76487846_76487923_76487952_76491534
transcript_18978.known	chr15	+	2026	15	FSM	ENSMUSG00000022550.19	ENSMUST00000161732.8	2026	15	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_4	36.3298381892508	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAAATCGTTTTCTTTG	3103	False	NA	NA	False	NA	NA	NA	76460558	76480008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477635_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
transcript_1898.known	chr1	+	1268	4	FSM	ENSMUSG00000026270.12	ENSMUST00000117814.8	1268	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	7.1336448530109	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCCGGACCTGCTGTGGT	2650	False	NA	18	True	CATAAA	-18	NA	92862487	92868694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_92862737_92865666_92865799_92867044_92867242_92868004
transcript_18983.nic	chr15	+	2112	14	NIC	ENSMUSG00000022550.19	novel	2040	15	NA	NA	-16	0	intron_retention	FALSE	canonical	3	116	junction_9	17.5296874138817	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAATCGTTTTCTTTGT	3086	False	NA	NA	False	NA	NA	NA	76460541	76480009	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478060_76478137_76478252_76478352_76478485_76478563_76478648_76478728_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
transcript_18985.nic	chr15	+	2127	14	NIC	ENSMUSG00000022550.19	novel	2040	15	NA	NA	-16	0	intron_retention	FALSE	canonical	3	114	junction_9	18.1199161407206	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAAATCGTTTTCTTTGT	3086	False	NA	NA	False	NA	NA	NA	76460541	76480009	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_76460695_76471957_76472062_76473268_76473419_76477433_76477510_76477630_76477832_76477918_76478252_76478352_76478485_76478563_76478648_76478728_76478811_76478873_76478953_76479046_76479139_76479213_76479467_76479536_76479654_76479738
transcript_18995.known	chr15	+	747	4	FSM	ENSMUSG00000022550.19	ENSMUST00000159949.8	747	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	73.1619208787376	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGTTGTTGTTGTCCTTT	3149	False	NA	NA	False	NA	NA	NA	76460604	76476023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76460695_76471957_76472062_76473268_76473419_76475620
transcript_18997.known	chr15	-	2750	12	FSM	ENSMUSG00000063354.8	ENSMUST00000230977.2	2750	12	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_11	41.2272476696326	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCCAACTACACTGTCTT	8130	False	NA	-10	True	AATAAA	-13	NA	76501584	76496590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
transcript_19.known	ERCC-00054	+	256	1	FSM	ERCC-00054A	DQ516731	256	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00054_+_0_300
transcript_190.known	SIRV7	-	2462	5	FSM	SIRV7A	SIRV705	2462	5	0	0	0	0	multi-exon	FALSE	canonical	3	1923	junction_2	1231.81783860277	1159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATTAGTGTTAATATGAA	NA	False	NA	NA	False	TATAAA	-17	NA	147925	1005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV7_-_2676_2993_3112_43028_43078_114680_114989_147608
transcript_1900.known	chr1	-	1366	4	FSM	ENSMUSG00000026273.14	ENSMUST00000027492.14	1366	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	7.36357401145817	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGGAGTCTTTTTCTCT	NA	False	NA	1	True	AATAAA	-39	NA	93233637	93228926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_93229518_93230439_93230625_93232329_93232829_93233546
transcript_19000.nnic	chr15	-	1983	11	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	-46	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_10	121.107555503362	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8620	False	NA	-2	True	AATAAA	-21	NA	76501094	76496582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500772
transcript_19001.known	chr15	-	2063	11	FSM	ENSMUSG00000063354.8	ENSMUST00000073428.7	2063	11	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	124.203099800287	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8666	False	NA	-2	True	AATAAA	-21	NA	76501048	76496582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76498256_76498430_76498686_76498859_76498949_76499114_76499243_76499440_76500074_76500360_76500772
transcript_19003.nnic	chr15	-	1908	10	NIC	ENSMUSG00000063354.8	novel	2750	12	NA	NA	-167	0	combination_of_known_splicesites	FALSE	canonical	3	43	junction_9	124.308258816044	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACACTGTCTTCTTGTAGA	8499	False	NA	-2	True	AATAAA	-21	NA	76501215	76496582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_76496864_76496954_76497143_76497403_76497557_76497656_76497712_76497797_76497918_76497986_76498146_76498256_76498430_76498686_76498859_76498949_76499114_76500772
transcript_1901.known	chr1	-	3097	4	FSM	ENSMUSG00000026273.14	ENSMUST00000112944.8	3097	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	30.4448499567478	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAAGAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	93233585	93226932	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_93229307_93230439_93230625_93232329_93232829_93233546
transcript_19010.known	chr15	-	4235	26	FSM	ENSMUSG00000059323.15	ENSMUST00000168185.8	4235	26	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_21	25.6881606970994	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGTCAGCTCTCTGCG	NA	False	NA	-1	True	AATAAA	-16	NA	76524158	76510437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76510683_76512948_76513083_76513456_76513531_76513865_76514042_76514676_76514849_76515030_76515333_76515993_76516073_76516160_76516312_76516806_76516884_76516972_76517704_76517785_76517910_76517990_76518155_76518244_76518318_76518764_76518855_76518968_76519052_76520315_76520506_76520761_76520888_76521140_76521294_76521379_76521526_76522051_76522167_76522241_76522414_76522671_76522802_76523039_76523224_76523647_76523791_76523877_76523974_76524053
transcript_19011.known	chr15	-	911	10	FSM	ENSMUSG00000115987.2	ENSMUST00000078803.5	911	10	0	0	0	0	multi-exon	FALSE	canonical	3	892	junction_9	85.8889607589177	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9603	False	NA	-25	True	AATAAA	-17	NA	76510274	76506308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188
transcript_19013.known	chr15	-	941	10	FSM	ENSMUSG00000115987.2	ENSMUST00000229019.2	941	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_8	311.796586112021	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGTGGGCAGCTATACT	9671	False	NA	-25	True	AATAAA	-17	NA	76510206	76506308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76507473_76507588_76507695_76508285_76508376_76508647_76508686_76508791_76508919_76509333_76509406_76510188
transcript_19019.known	chr15	-	1631	8	FSM	ENSMUSG00000115987.2	ENSMUST00000229261.2	1631	8	0	0	0	0	multi-exon	TRUE	canonical	3	892	junction_7	94.9343489588721	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGGGCAGCTATACTG	9591	False	NA	-24	True	AATAAA	-18	NA	76510286	76506307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76506551_76506670_76506763_76506854_76506909_76507370_76508376_76508647_76508686_76508791_76508821_76509333_76509406_76510188
transcript_1902.known	chr1	-	1525	3	FSM	ENSMUSG00000026273.14	ENSMUST00000112942.2	1525	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTATTCTACCATTTCT	NA	False	NA	NA	False	CATAAA	-21	NA	93233586	93229638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_93230625_93232329_93232829_93233546
transcript_19022.known	chr15	-	1854	4	FSM	ENSMUSG00000053929.18	ENSMUST00000176274.2	1854	4	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_1	196.445638508186	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCTGTGTGTCTGCTT	NA	False	NA	-1	True	AATAAA	-24	NA	76541120	76531126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76531969_76532298_76532511_76533140_76533380_76540559
transcript_19025.nnic	chr15	-	1274	3	NNC	ENSMUSG00000053929.18	novel	1110	3	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	39.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGTATGGAATTTGTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	76544333	76542339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_76543066_76543418_76543640_76544006
transcript_19026.known	chr15	-	1110	3	FSM	ENSMUSG00000053929.18	ENSMUST00000177359.2	1110	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	30	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGTATGGAATTTGTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	76544317	76542339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76543066_76543418_76543640_76544154
transcript_19027.nnic	chr15	-	1078	3	NNC	ENSMUSG00000053929.18	novel	1110	3	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	38.5	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAGTATGGAATTTGTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	76544335	76542339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_76543066_76543418_76543640_76544204
transcript_19028.known	chr15	-	1168	3	FSM	ENSMUSG00000053929.18	ENSMUST00000066677.10	1168	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	38.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTATGGAATTTGTTTAT	NA	False	NA	NA	False	AATAAA	-16	NA	76544308	76542338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76543066_76543418_76543706_76544154
transcript_19029.known	chr15	-	1271	2	FSM	ENSMUSG00000053929.18	ENSMUST00000231152.2	1271	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAATTTGTTTATTCTTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76543956	76542332	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76543066_76543418
transcript_19030.known	chr15	-	507	3	FSM	ENSMUSG00000033837.6	ENSMUST00000230207.2	507	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	159.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTCAGCATCAAGTCCCT	NA	False	NA	NA	False	NA	NA	NA	76554002	76553124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76553341_76553428_76553522_76553804
transcript_19031.known	chr15	-	1365	3	FSM	ENSMUSG00000033837.6	ENSMUST00000037824.6	1365	3	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_2	19.5	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGACAGCTTTAAAACACCAG	NA	False	NA	NA	False	NA	NA	NA	76554148	76552424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76553341_76553428_76553534_76553804
transcript_19032.known	chr15	+	2827	12	FSM	ENSMUSG00000033819.17	ENSMUST00000135388.3	2827	12	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_1	32.5360575565374	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCCCATGTGTCTCACT	NA	False	NA	22	True	GATAAA	-17	NA	76555846	76579119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76555963_76573527_76573695_76574371_76575353_76575896_76575968_76576054_76576201_76577036_76577141_76577213_76577339_76577426_76577553_76577638_76577715_76577794_76577925_76578067_76578231_76578497
transcript_19033.known	chr15	+	2692	11	FSM	ENSMUSG00000033819.17	ENSMUST00000037551.15	2692	11	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	16.1864140562386	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTCCCATGTGTCTCACT	NA	False	NA	22	True	GATAAA	-17	NA	76555814	76579119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76555963_76574371_76575353_76575896_76575968_76576054_76576201_76577036_76577141_76577213_76577339_76577426_76577553_76577638_76577715_76577794_76577925_76578067_76578231_76578497
transcript_19042.known	chr15	+	982	6	FSM	ENSMUSG00000022546.6	ENSMUST00000229140.2	982	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	4.40908153700972	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGGTGGCTGCCTGGGT	5989	False	NA	2	True	AATAAA	-18	NA	76582410	76583848	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76582583_76582655_76582793_76582914_76583090_76583195_76583352_76583435_76583549_76583619
transcript_19046.known	chr15	+	2246	5	FSM	ENSMUSG00000019080.9	ENSMUST00000019224.9	2246	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	6.01560470775798	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGAGTCTGCCCAGGTT	9243	False	NA	NA	False	NA	NA	NA	76585664	76588439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76586551_76586843_76586992_76587078_76587204_76587273_76587384_76587462
transcript_1905.known	chr1	+	10315	10	FSM	ENSMUSG00000026275.14	ENSMUST00000027494.11	10315	10	0	0	0	0	multi-exon	FALSE	canonical	3	496	junction_6	62.1028617061949	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTGTTCGTCTGTGTTTC	NA	False	NA	NA	False	AATAAA	-22	NA	93270575	93301211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_93271434_93273877_93274010_93278046_93278103_93278670_93278737_93279227_93279359_93280238_93280402_93282050_93282168_93285478_93285584_93288447_93288535_93292611
transcript_19053.known	chr15	+	4849	4	FSM	ENSMUSG00000033728.15	ENSMUST00000127208.8	4849	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	34.1792659696229	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGTTATTCTGGAATCA	NA	False	NA	NA	False	AATAAA	-17	NA	76594837	76601899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76595128_76597066_76597421_76597600_76598186_76598279
transcript_19055.known	chr15	+	1782	4	FSM	ENSMUSG00000033728.15	ENSMUST00000142610.8	1782	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	50.1752484354144	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTGTGTCCTAATTGGA	NA	False	NA	NA	False	NA	NA	NA	76594842	76599252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76595128_76597066_76597421_76598015_76598186_76598279
transcript_19057.known	chr15	+	2832	4	FSM	ENSMUSG00000033728.15	ENSMUST00000137649.8	2832	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	33.8066397160216	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGCATTTCTAGTGTTGC	NA	False	NA	NA	False	NA	NA	NA	76594842	76599284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76595731_76597066_76597421_76597600_76598186_76598279
transcript_19059.known	chr15	-	1754	3	FSM	ENSMUSG00000116138.2	ENSMUST00000036247.10	1754	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	1	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTATTGACTTTAAATGA	9309	False	NA	-4	True	ATTAAA	-23	NA	76608040	76605664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76607184_76607370_76607420_76607854
transcript_1906.nnic	chr1	+	1579	9	NIC	ENSMUSG00000026275.14	novel	10315	10	NA	NA	395	-8224	combination_of_known_splicesites	FALSE	canonical	3	27	junction_6	208.918307898087	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTGGTGAATTGATGAAA	NA	False	NA	15	True	ATTAAA	-16	NA	93270970	93292987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_93271434_93273877_93274010_93278046_93278103_93278670_93278737_93279227_93279359_93280238_93280402_93285478_93285584_93288447_93288535_93292611
transcript_19060.known	chr15	-	4036	4	FSM	ENSMUSG00000022526.9	ENSMUST00000080406.7	4036	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	4.24264068711928	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGTCTGTAGTGATGGT	NA	False	NA	NA	False	ATTAAA	-17	NA	76755635	76735808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76738815_76754006_76754121_76754481_76754615_76754852
transcript_19062.known	chr15	+	2772	5	FSM	ENSMUSG00000033669.9	ENSMUST00000023179.7	2772	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	13.4976849866931	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTAGCCTGTACTTTGAA	NA	False	NA	NA	False	AATAAA	-19	NA	76763458	76776595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76763554_76764938_76764983_76765311_76765439_76772430_76772548_76774206
transcript_19064.nnic	chr15	+	2841	5	NNC	ENSMUSG00000033669.9	novel	2772	5	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	38.4341970125564	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTAGCCTGTACTTTGAA	NA	False	NA	NA	False	AATAAA	-19	NA	76763439	76776595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_76763554_76764938_76764983_76765311_76765439_76772430_76772598_76774206
transcript_19065.known	chr15	+	2960	5	FSM	ENSMUSG00000033669.9	ENSMUST00000230106.2	2960	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	32.962099447699	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAAAGGTGTAGCCTGTAC	NA	False	NA	NA	False	AATAAA	-13	NA	76763508	76776589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76763798_76764938_76764983_76765311_76765439_76772430_76772548_76774206
transcript_19066.known	chr15	+	1384	5	FSM	ENSMUSG00000116024.2	ENSMUST00000230214.2	1384	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	41.8270247567288	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGGTAAAGCAACTATTAAA	NA	False	NA	NA	False	ATTAAA	-1	NA	76763633	76785483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76763798_76764938_76764983_76765311_76765439_76772430_76772548_76784551
transcript_19069.known	chr15	+	920	2	FSM	ENSMUSG00000055041.9	ENSMUST00000109793.3	920	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAAGTAAACAGCTGGGCT	NA	False	NA	NA	False	NA	NA	NA	76784135	76785391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76784216_76784551
transcript_1907.known	chr1	-	6231	28	FSM	ENSMUSG00000034088.16	ENSMUST00000170883.8	6231	28	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_27	59.547263104276	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGTGATGGGACTCAT	NA	False	NA	-10	True	AATAAA	-14	NA	93406523	93333661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93406434
transcript_19070.known	chr15	+	1331	1	FSM	ENSMUSG00000055041.9	ENSMUST00000230815.2	1331	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTAAAAACATGTTATTC	NA	False	NA	NA	False	ATTAAA	-13	NA	76784164	76785495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76784200_76785500
transcript_19071.known	chr15	+	4356	4	FSM	ENSMUSG00000033669.9	ENSMUST00000230954.2	4356	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	33.9542175419916	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTAGCCTGTACTTTGAA	NA	False	NA	NA	False	AATAAA	-19	NA	76763530	76776595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76763554_76764938_76764983_76765314_76765439_76772430
transcript_19072.known	chr15	+	1037	2	FSM	ENSMUSG00000055041.9	ENSMUST00000068407.6	1037	2	0	0	0	0	multi-exon	TRUE	canonical	3	114	junction_1	0	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTTATTCTATTAGGGAA	NA	False	NA	NA	False	ATTAAA	-23	NA	76784109	76785505	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76784193_76784551
transcript_19074.known	chr15	+	851	6	FSM	ENSMUSG00000003970.10	ENSMUST00000004072.10	851	6	0	0	0	0	multi-exon	FALSE	canonical	3	5295	junction_1	2369.37927736359	22275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	False	NA	34	True	AATAAA	-18	NA	76788277	76790514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76788310_76788502_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
transcript_19075.known	chr15	+	1020	5	FSM	ENSMUSG00000003970.10	ENSMUST00000229183.2	1020	5	0	0	0	0	multi-exon	FALSE	canonical	3	10804	junction_2	302.309754225695	2351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGCGTGTGTGAGCCTCT	NA	False	NA	34	True	AATAAA	-18	NA	76788301	76790514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76788651_76788738_76788881_76789017_76789237_76790055_76790172_76790320
transcript_19077.known	chr15	-	2212	5	FSM	ENSMUSG00000054967.8	ENSMUST00000229055.2	2212	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	6.04152298679729	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGATGGCTCTGAGTTTGT	8485	False	NA	NA	False	ATTAAA	-24	NA	76809648	76794570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76796376_76801489_76801604_76801834_76801962_76802168_76802262_76809575
transcript_19079.known	chr15	+	1043	5	FSM	ENSMUSG00000063236.7	ENSMUST00000071792.7	1043	5	0	0	0	0	multi-exon	TRUE	canonical	1	74	junction_2	101.489839392917	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGGATGGTGTGAGAGA	NA	False	NA	21	True	AATAAA	-13	NA	76832705	76834929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76832745_76832828_76833120_76833267_76833353_76833743_76833891_76834448
transcript_19083.known	chr15	+	1111	4	FSM	ENSMUSG00000063236.7	ENSMUST00000230274.2	1111	4	0	0	0	0	multi-exon	FALSE	canonical	1	74	junction_1	105.909814884594	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAGGATGGTGTGAGAGA	NA	False	NA	21	True	AATAAA	-13	NA	76832721	76834929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_76833120_76833267_76833353_76833743_76833891_76834448
transcript_19084.known	chr15	-	1694	13	FSM	ENSMUSG00000033565.19	ENSMUST00000228087.2	1694	13	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_12	49.6258221314491	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATTTCCACGTCTGTAT	NA	False	NA	NA	False	AAAAAG	-4	NA	77037954	76967999	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982273_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77037729
transcript_19088.known	chr15	-	6573	13	FSM	ENSMUSG00000033565.19	ENSMUST00000166610.8	6573	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	66.7536931978715	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCCCTGGCGTTTTGGCTCC	NA	False	NA	-8	True	AATAAA	-14	NA	77038012	76963190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_76968407_76969777_76969851_76970266_76970356_76978650_76978691_76982139_76982285_76983439_76983533_76983638_76983693_76987078_76987140_76989776_76989870_76997804_76997859_77001120_77001268_77016916_77017142_77037729
transcript_19097.known	chr15	-	7433	41	FSM	ENSMUSG00000022443.18	ENSMUST00000016771.13	7433	41	0	0	0	0	multi-exon	TRUE	canonical	3	307	junction_27	78.3427565254121	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGGTGTCTGGGTGTTT	NA	False	NA	-2	True	AATAAA	-17	NA	77726375	77644786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_77646217_77647151_77647325_77647421_77647531_77647991_77648201_77648499_77648624_77648704_77648794_77649899_77650029_77650913_77651076_77651330_77651544_77651650_77651864_77652991_77653241_77653400_77653554_77653704_77653810_77653966_77654174_77655324_77655470_77656023_77656237_77657471_77657644_77658134_77658259_77658756_77658895_77659273_77659481_77660002_77660135_77661090_77661200_77661967_77662129_77664189_77664260_77665310_77665433_77665521_77665716_77667588_77667704_77669292_77669467_77670686_77670861_77671709_77671863_77673118_77673238_77674067_77674164_77674903_77675048_77675247_77675347_77675915_77675980_77676453_77676547_77680160_77680255_77681200_77681229_77692067_77692225_77697079_77697432_77726156
transcript_19099.known	chr15	-	2980	3	FSM	ENSMUSG00000022443.18	ENSMUST00000134878.2	2980	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_2	41.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAATCATCCCTA	NA	False	NA	NA	False	NA	NA	NA	77726305	77689745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_77692225_77697079_77697432_77726156
transcript_19101.nic	chr15	-	827	5	NIC	ENSMUSG00000005354.17	novel	1298	4	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	503.602211571792	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGCTGTTCTGTGGGC	17	True	NA	-5	True	AATAAA	-19	NA	77813203	77799246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_77799437_77799904_77800058_77808742_77808867_77811891_77812155_77813106
transcript_19103.known	chr15	-	1298	4	FSM	ENSMUSG00000005354.17	ENSMUST00000005487.12	1298	4	0	0	0	0	multi-exon	FALSE	canonical	3	1083	junction_2	92.120693778446	627	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGCTGTTCTGTGGGC	14	True	NA	-5	True	AATAAA	-19	NA	77813206	77799246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_77800058_77808742_77808867_77811891_77812155_77813106
transcript_19109.known	chr15	-	676	3	FSM	ENSMUSG00000005354.17	ENSMUST00000100486.6	676	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	642	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACGGGCTCACAACCAT	2724	False	NA	NA	False	NA	NA	NA	77813197	77810597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_77810920_77811891_77812155_77813106
transcript_1911.nic	chr1	-	1116	7	ISM	ENSMUSG00000034088.16	ENSMUST00000170883.8	6231	28	-53	25016	-39	62	5prime_fragment	FALSE	canonical	3	431	junction_6	30.9914862861113	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTACAGTGTGGAGGTGGCA	NA	False	NA	4	True	NA	NA	NA	93406576	93358677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93406434
transcript_19112.nic	chr15	-	1888	15	NIC	ENSMUSG00000016554.10	novel	1899	15	NA	NA	67	0	combination_of_known_junctions	FALSE	canonical	3	103	junction_14	427.115718201396	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCGTCCTGTGCTCCCGTT	2980	False	NA	-11	True	AATAAA	-24	NA	77854778	77843197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854658
transcript_19113.known	chr15	-	1899	15	FSM	ENSMUSG00000016554.10	ENSMUST00000100484.6	1899	15	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_9	114.082520258677	1089	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCGTCCTGTGCTCCCGTT	2745	False	NA	-11	True	AATAAA	-24	NA	77855013	77843197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_77843323_77843711_77843996_77844153_77844297_77845813_77845944_77846045_77846132_77846639_77846771_77847377_77847526_77848219_77848353_77849102_77849216_77850337_77850411_77850881_77850968_77851502_77851640_77852375_77852422_77852656_77852790_77854882
transcript_1912.known	chr1	-	4427	28	FSM	ENSMUSG00000034088.16	ENSMUST00000042498.14	4427	28	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_27	104.811974833924	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTTTGCCCTCTTCCTTTCC	NA	False	NA	NA	False	AATAAA	-27	NA	93373408	93335483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_93335982_93336090_93336220_93336410_93336528_93336672_93336859_93340084_93340229_93341212_93341348_93341548_93341654_93342533_93342689_93344222_93344362_93344893_93345113_93345189_93345412_93347790_93348010_93348805_93348938_93349064_93349152_93350985_93351100_93351491_93351597_93352988_93353129_93355279_93355359_93355869_93355975_93357099_93357208_93357819_93358027_93358676_93358893_93359033_93359241_93364815_93365032_93365947_93366106_93368401_93368515_93369907_93369973_93373301
transcript_19128.known	chr15	-	1013	7	FSM	ENSMUSG00000016637.8	ENSMUST00000016781.8	1013	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	104.002270274366	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACGGCTTCTGTTCTTAGT	NA	False	NA	-2	True	AATAAA	-14	NA	78058307	78043662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_78043909_78048389_78048500_78049346_78049465_78050173_78050234_78051269_78051330_78052112_78052193_78057968
transcript_19129.nnic	chr15	-	1142	7	NNC	ENSMUSG00000016637.8	novel	1013	7	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	128.12418021418	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACGGCTTCTGTTCTTAGT	NA	False	NA	-2	True	AATAAA	-14	NA	78058302	78043662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_78043909_78048389_78048500_78049346_78049465_78050173_78050234_78051269_78051464_78052112_78052193_78057968
transcript_1913.nic	chr1	+	3314	14	NIC	ENSMUSG00000116048.2	novel	3219	13	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_1	343.313233551171	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406759	93437455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_93406791_93407185_93407322_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
transcript_19132.known	chr15	-	1144	2	FSM	ENSMUSG00000044986.11	ENSMUST00000058659.9	1144	2	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_1	0	294	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTCTGCCTCCTTGCCC	8084	False	NA	-3	True	AATAAA	-17	NA	78290107	78283755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_78284231_78289438
transcript_19133.known	chr15	+	1279	3	FSM	ENSMUSG00000071711.13	ENSMUST00000167140.8	1279	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	6.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACAAAAACATTTGTGG	NA	False	NA	NA	False	AATAAA	-6	NA	78290911	78298202	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_78290945_78294242_78294865_78297578
transcript_19134.known	chr15	+	1309	3	FSM	ENSMUSG00000071711.13	ENSMUST00000169133.8	1309	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACAAAAACATTTGTGG	NA	False	NA	NA	False	AATAAA	-6	NA	78291000	78298202	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_78291064_78294242_78294865_78297578
transcript_19135.known	chr15	+	1753	3	FSM	ENSMUSG00000071711.13	ENSMUST00000043865.8	1753	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTGGTTGTGAGAATG	NA	False	NA	NA	False	AATAAA	-17	NA	78290974	78298213	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_78291471_78294242_78294865_78297578
transcript_19136.known	chr15	+	1311	2	FSM	ENSMUSG00000071711.13	ENSMUST00000229739.2	1311	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAACATTTGTGGTTGT	NA	False	NA	NA	False	AATAAA	-10	NA	78294181	78298206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_78294865_78297578
transcript_19138.known	chr15	+	986	6	FSM	ENSMUSG00000033287.18	ENSMUST00000159771.8	986	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	37.5819105421744	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCACCTCTTAGAGCCTC	NA	False	NA	NA	False	NA	NA	NA	78312861	78323043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_78313068_78314241_78314351_78317184_78317277_78318114_78318211_78319784_78319911_78322686
transcript_19139.known	chr15	-	2402	3	FSM	ENSMUSG00000022440.10	ENSMUST00000023075.9	2402	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGCCTGGTACTTTTTGC	NA	False	NA	NA	False	AATAAA	-22	NA	78413825	78407545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_78409599_78411427_78411669_78413717
transcript_1914.known	chr1	+	3219	13	FSM	ENSMUSG00000116048.2	ENSMUST00000179353.8	3219	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	266.051999929838	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406714	93437455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_93406791_93416849_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
transcript_19140.known	chr15	-	3038	7	FSM	ENSMUSG00000033220.8	ENSMUST00000043214.8	3038	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	5.64702478203247	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGTGGAATTTTATTTC	NA	False	NA	NA	False	AATAAA	-20	NA	78456983	78443366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_78445686_78446105_78446239_78449062_78449223_78449640_78449704_78450113_78450232_78454931_78455004_78456810
transcript_19142.known	chr15	-	394	2	FSM	ENSMUSG00000116097.2	ENSMUST00000229702.2	394	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGCTGTGGTCGGAGTAT	2853	False	NA	-3	True	NA	NA	NA	78465816	78458610	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_78458873_78465684
transcript_19144.known	chr15	-	1865	8	FSM	ENSMUSG00000018169.13	ENSMUST00000018313.6	1865	8	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_5	11.4749060731561	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTCCAGCTTCCTGCT	NA	False	NA	-4	True	ATTAAA	-17	NA	78657675	78640081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_78640845_78641496_78641583_78643392_78643559_78645005_78645092_78648514_78648669_78651017_78651121_78651341_78651391_78657217
transcript_19146.known	chr15	+	2665	17	FSM	ENSMUSG00000033128.10	ENSMUST00000230192.2	2665	17	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_10	123.234516649152	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTAGCTGCTCTTGTCA	NA	False	NA	14	True	AATAAA	-14	NA	78761750	78778781	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_78761818_78765237_78765323_78766327_78766404_78767467_78767567_78768284_78768409_78769455_78769557_78770063_78770145_78772310_78772449_78772617_78772700_78773202_78773311_78773919_78774069_78775636_78775702_78776113_78776287_78776652_78776841_78777366_78777537_78777738_78777850_78777933
transcript_19147.nnic	chr15	+	2695	17	NNC	ENSMUSG00000033128.10	novel	3034	17	NA	NA	-32	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	120.987328236266	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGCTGCTCTTGTCACCCT	NA	False	NA	18	True	AATAAA	-18	NA	78761718	78778785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_78761808_78765237_78765323_78766327_78766404_78767467_78767567_78768284_78768409_78769455_78769557_78770063_78770145_78772310_78772449_78772617_78772700_78773202_78773311_78773915_78774069_78775636_78775702_78776113_78776287_78776652_78776841_78777366_78777537_78777738_78777850_78777933
transcript_1915.known	chr1	+	3267	13	FSM	ENSMUSG00000116048.2	ENSMUST00000168776.8	3267	13	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	258.994798317564	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406782	93437455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_93406903_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
transcript_19157.known	chr15	+	2375	18	FSM	ENSMUSG00000022436.17	ENSMUST00000001226.11	2375	18	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_17	50.4832700370451	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGGAGTAACTGGCCAAACG	4533	False	NA	83	True	AATAAA	-16	NA	78784102	78796247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78795538
transcript_19158.known	chr15	+	1923	18	FSM	ENSMUSG00000022436.17	ENSMUST00000109698.9	1923	18	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_17	114.336569876277	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGTAACTGGCCAAACGAAAA	4398	False	NA	87	True	AATAAA	-20	NA	78783967	78796251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_78784162_78785345_78785389_78785598_78785704_78786754_78786832_78787053_78787166_78787258_78787336_78787752_78787898_78788469_78788539_78788663_78788755_78789229_78789376_78789970_78790083_78790455_78790538_78790622_78790704_78791413_78791531_78792160_78792259_78792552_78792713_78794207_78794300_78796129
transcript_19163.known	chr15	+	800	4	FSM	ENSMUSG00000068220.7	ENSMUST00000089377.6	800	4	0	0	0	0	multi-exon	FALSE	canonical	3	1912	junction_2	63.4367576584918	696	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCATGATGACACATACTT	NA	False	NA	NA	False	AATAAA	-15	NA	78810924	78814665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_78811005_78812169_78812250_78813832_78814005_78814197
transcript_19165.nic	chr15	+	1427	7	NIC	ENSMUSG00000033099.11	novel	681	4	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_1	219.064424821152	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTCTGTGCTTGTGCT	NA	False	NA	10	True	NA	NA	NA	78819362	78825064	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_78819895_78820008_78820100_78820678_78820785_78821333_78821383_78822007_78822151_78824265_78824367_78824659
transcript_19166.known	chr15	+	3721	6	FSM	ENSMUSG00000033099.11	ENSMUST00000138880.9	3721	6	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_1	39.9929993873928	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCTGGCCACGTGTGAC	NA	False	NA	NA	False	AGTAAA	-12	NA	78819132	78827838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_78819276_78820678_78820785_78821333_78821383_78822007_78822151_78824265_78824367_78824659
transcript_19168.nic	chr15	+	1320	6	NIC	ENSMUSG00000033099.11	novel	681	4	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	182.547528057764	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTCTGTGCTTGTGCT	NA	False	NA	10	True	NA	NA	NA	78819378	78825064	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_78819895_78820678_78820785_78821333_78821383_78822007_78822151_78824265_78824367_78824659
transcript_1917.nic	chr1	+	3240	13	NIC	ENSMUSG00000026276.21	novel	477	6	NA	NA	-1	-527	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	275.56259371612	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGTCCTCTTTTTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	93406943	93437455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_93407037_93416845_93416877_93418878_93419000_93423300_93423388_93425062_93425187_93426733_93426869_93426994_93427113_93428179_93428282_93429228_93429375_93431156_93431241_93433265_93433324_93434684_93434805_93435434
transcript_19170.known	chr15	+	742	5	FSM	ENSMUSG00000033099.11	ENSMUST00000041164.4	742	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	186.959053003592	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCAGTCTGTGCTTGTGCT	NA	False	NA	10	True	NA	NA	NA	78819194	78825064	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_78819276_78820678_78820785_78821333_78821383_78824265_78824367_78824659
transcript_19172.known	chr15	+	2570	14	FSM	ENSMUSG00000033088.20	ENSMUST00000109687.9	2570	14	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_8	26.3687999246734	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCTCTGTGGATGCTG	NA	False	NA	9	True	AATAAA	-13	NA	78867240	78890064	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_78867409_78872091_78872149_78875016_78875086_78875184_78875275_78875528_78875639_78877103_78877633_78878241_78878353_78883996_78884145_78885720_78885824_78886247_78886408_78886484_78886599_78887905_78887993_78888644_78888806_78889401
transcript_19173.known	chr15	+	1660	8	FSM	ENSMUSG00000033088.20	ENSMUST00000130663.10	1660	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_7	63.6226118191786	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATACAGAAATGGATTC	NA	False	NA	NA	False	AATAAA	-25	NA	78867276	78879059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_78867409_78872091_78872149_78875016_78875086_78875184_78875275_78875528_78875639_78877103_78877633_78878241_78878353_78878497
transcript_19174.known	chr15	+	2055	1	FSM	ENSMUSG00000096210.3	ENSMUST00000180086.3	2055	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGAGTGGTGCGTTTTTCT	1147	False	NA	21	True	AATAAA	-17	NA	78912649	78914704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_78912600_78914700
transcript_19175.known	chr15	+	2370	9	FSM	ENSMUSG00000006378.16	ENSMUST00000006544.9	2370	9	0	0	0	0	multi-exon	FALSE	canonical	3	1189	junction_6	75.224663508719	580	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAAGTGAGGCACCTGCC	632	False	NA	NA	False	ATTAAA	-25	NA	78915073	78922553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_78915321_78918130_78918262_78919159_78919262_78919456_78919604_78919976_78920132_78920219_78920303_78920466_78920639_78920952_78921075_78921342
transcript_19189.known	chr15	+	1942	13	FSM	ENSMUSG00000033047.6	ENSMUST00000040518.6	1942	13	0	0	0	0	multi-exon	FALSE	canonical	3	1651	junction_4	129.272537257102	1000	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTGGTCTCATTATTAT	NA	False	NA	30	True	AGTAAA	-20	NA	78959378	78978605	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_78959493_78959970_78960020_78961030_78961242_78962273_78962354_78963192_78963255_78965786_78965857_78966053_78966128_78968311_78968484_78969756_78969912_78970633_78970805_78973663_78974162_78977536_78977618_78978400
transcript_19197.known	chr15	-	691	6	FSM	ENSMUSG00000033029.13	ENSMUST00000190730.7	691	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.56124969497314	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATGGCTTTGTCCTGTGGC	3715	False	NA	NA	False	GGGGCT	-19	NA	79025434	79019216	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79019423_79019552_79019654_79019836_79019966_79023437_79023501_79025080_79025193_79025354
transcript_19199.known	chr15	+	452	5	FSM	ENSMUSG00000033020.8	ENSMUST00000040077.8	452	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	888.21224940889	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTTTTATATGTGTAAATA	NA	False	NA	-18	True	NA	NA	NA	79025550	79035928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_79025635_79028793_79028864_79030252_79030339_79035535_79035608_79035788
transcript_1920.known	chr1	-	4249	12	FSM	ENSMUSG00000026277.15	ENSMUST00000027498.14	4249	12	0	0	0	0	multi-exon	TRUE	canonical	3	133	junction_7	20.1461601451751	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAAGACAGCACTTACAA	NA	False	NA	NA	False	AATAAA	-13	NA	93563444	93547472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502_93553689_93553772_93553931_93554746_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
transcript_19202.known	chr15	+	885	5	FSM	ENSMUSG00000033020.8	ENSMUST00000230271.2	885	5	0	0	0	0	multi-exon	FALSE	canonical	3	2023	junction_4	39.9335385359224	1242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCGTTACCTGCGTGCTG	NA	False	NA	28	True	AATAAA	-22	NA	79025208	79035974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_79025635_79028793_79028864_79030252_79030384_79035535_79035608_79035788
transcript_19203.known	chr15	+	414	5	FSM	ENSMUSG00000033020.8	ENSMUST00000229973.2	414	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	890.483962517012	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATCCCCATCATCATTC	NA	False	NA	NA	False	NA	NA	NA	79025565	79035794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_79025635_79028793_79028864_79030252_79030384_79035535_79035674_79035788
transcript_19207.nnic	chr15	+	1761	5	NNC	ENSMUSG00000075555.13	novel	905	4	NA	NA	-57	54836	intron_retention	FALSE	non_canonical	0	0	junction_3	1.6583123951777	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTTTTTTAAAGATAGGTA	3835	False	NA	NA	False	NA	NA	NA	79093453	79166560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_79093676_79094390_79094450_79100309_79101588_79110638_79110803_79166522
transcript_19208.nnic	chr15	+	409	2	NNC	ENSMUSG00000075555.13	novel	905	4	NA	NA	-116	-5850	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTGTTTTCCATTCGAAT	3776	False	NA	NA	False	AATAAA	-29	NA	79093394	79094518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_79093676_79094390
transcript_19210.known	chr15	+	1977	13	FSM	ENSMUSG00000068206.14	ENSMUST00000018295.14	1977	13	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_9	26.1878894826512	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGGGCTCCTTGCAATG	4383	False	NA	18	True	AATAAA	-18	NA	79113581	79133666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_79113771_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132920
transcript_19212.known	chr15	+	2054	13	FSM	ENSMUSG00000068206.14	ENSMUST00000163571.8	2054	13	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	62.6245425798331	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCAGACCCTTTGCAGC	4174	False	NA	36	True	AATAAA	-36	NA	79113372	79133684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_79113621_79113949_79114054_79114743_79114856_79123783_79123913_79125426_79125494_79127167_79127258_79129054_79129109_79129489_79129553_79130177_79130312_79130607_79130701_79131464_79131516_79132351_79132497_79132920
transcript_1922.known	chr1	-	2821	11	FSM	ENSMUSG00000026277.15	ENSMUST00000151068.8	2821	11	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_5	14.8354305633507	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATGTACAGAGCCTGGC	NA	False	NA	-36	True	AATAAA	-19	NA	93563351	93549623	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_93550249_93551117_93551255_93552274_93552347_93552755_93552871_93553182_93553329_93553502_93553689_93553772_93554856_93555375_93555433_93556755_93556987_93563019_93563106_93563268
transcript_19220.known	chr15	-	3318	17	FSM	ENSMUSG00000042632.18	ENSMUST00000174021.8	3318	17	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_16	39.721638860324	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212164	79170427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834
transcript_19222.nic	chr15	-	3032	17	NIC	ENSMUSG00000042632.18	novel	3318	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_16	39.5790348543266	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212453	79170427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79188504_79188670_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212409
transcript_19225.known	chr15	-	3365	16	FSM	ENSMUSG00000042632.18	ENSMUST00000166977.9	3365	16	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_8	51.9652020319581	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212376	79170427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79211834
transcript_19226.known	chr15	-	2963	16	FSM	ENSMUSG00000042632.18	ENSMUST00000047816.15	2963	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	63.160817671155	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212428	79170427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212288
transcript_19227.nic	chr15	-	2867	16	NIC	ENSMUSG00000042632.18	novel	2943	17	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_8	51.8533830461748	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATTGTACAGTGTGTGC	NA	False	NA	-10	True	AATAAA	-16	NA	79212453	79170427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_79171096_79171309_79171384_79171815_79171984_79173330_79173486_79173778_79173916_79181498_79181650_79183231_79183396_79186818_79186898_79189902_79190012_79190483_79190667_79191512_79191610_79192868_79193057_79195993_79196178_79197147_79197364_79201960_79202211_79212409
transcript_19228.known	chr15	-	3627	9	FSM	ENSMUSG00000009035.16	ENSMUST00000074991.10	3627	9	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_8	29.0298876160415	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCCTGCCAGCGAGGTT	NA	False	NA	-3	True	AATATA	-34	NA	79287769	79244883	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79247086_79249484_79249680_79249986_79250157_79250786_79250879_79253869_79253946_79254097_79254189_79261246_79261413_79262663_79262914_79287384
transcript_19229.nic	chr15	-	2666	11	NIC	ENSMUSG00000022433.22	novel	2695	11	NA	NA	5	0	combination_of_known_junctions	TRUE	canonical	3	24	junction_10	159.216487839671	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATACCCTCTGTCTGCCTCT	8024	False	NA	-4	True	AATAAA	-24	NA	79326332	79302055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79326292
transcript_19230.nic	chr15	-	2735	11	NIC	ENSMUSG00000022433.22	novel	2695	11	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	155.61375260561	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATACCCTCTGTCTGCCTCT	8397	False	NA	-4	True	AATAAA	-24	NA	79339799	79302055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79339690
transcript_19233.nic	chr15	-	1548	11	NIC	ENSMUSG00000022433.22	novel	1392	11	NA	NA	-138	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	155.61375260561	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TACAAATAAGAGAAAGGACA	8291	False	NA	NA	False	NA	NA	NA	79339905	79303348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_79303388_79304104_79304169_79304783_79304924_79305017_79305211_79309039_79309189_79309699_79309871_79310458_79310688_79313911_79314061_79314254_79314366_79322971_79323060_79339690
transcript_19236.known	chr15	-	4726	13	FSM	ENSMUSG00000055065.8	ENSMUST00000229877.2	4726	13	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_12	13.0064086767511	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGAATTTTTTATTACA	NA	False	NA	-40	True	AATAAA	-15	NA	79430942	79411936	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79414719_79415878_79416116_79420157_79420218_79421197_79421260_79421635_79421747_79422759_79422933_79423018_79423180_79423519_79423662_79424613_79424680_79425234_79425369_79426687_79426788_79427906_79428058_79430395
transcript_19238.known	chr15	+	1411	5	FSM	ENSMUSG00000010830.9	ENSMUST00000010974.9	1411	5	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	14.7986485869487	113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTCAAGTATTTATTTATA	NA	False	NA	11	True	AATAAA	-16	NA	79400611	79411940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_79400842_79407011_79407113_79409004_79409164_79409867_79410121_79411272
transcript_19240.known	chr15	-	2219	14	FSM	ENSMUSG00000022429.12	ENSMUST00000023065.8	2219	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	20.9451241307391	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTGATTCTGCATTCA	NA	False	NA	NA	False	AGTAAA	-16	NA	79489309	79445697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79469869_79469962_79472951_79473025_79475805_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
transcript_19247.known	chr15	-	1931	12	FSM	ENSMUSG00000022429.12	ENSMUST00000229408.2	1931	12	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	21.834085113127	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAATATAAGACTATTTA	NA	False	NA	NA	False	AATAAA	-10	NA	79489300	79445811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79446784_79452839_79452957_79468519_79468581_79469062_79469178_79469298_79469373_79475805_79475848_79477335_79477389_79480444_79480528_79484246_79484394_79485717_79485763_79486601_79486686_79489162
transcript_19258.nic	chr15	-	861	4	ISM	ENSMUSG00000022429.12	ENSMUST00000229408.2	1931	12	-55	38043	-45	-37271	5prime_fragment	FALSE	canonical	3	81	junction_3	2.82842712474619	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTACCTTTATACTACTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	79489355	79483854	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_-_79484394_79485717_79485763_79486601_79486686_79489162
transcript_19259.known	chr15	+	1147	5	FSM	ENSMUSG00000022428.9	ENSMUST00000023064.9	1147	5	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_3	15.1224171348366	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTGTGTAGCAAAAATAG	9559	False	NA	NA	False	ATTAAA	-14	NA	79543399	79551861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_79543495_79545571_79545726_79549846_79549953_79550031_79550151_79551188
transcript_1926.known	chr1	+	1468	5	FSM	ENSMUSG00000026278.15	ENSMUST00000027499.13	1468	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	2.9474565306379	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGAGACTCTACTCTGCT	NA	False	NA	6	True	AATAAA	-16	NA	93613381	93623486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_93613577_93614139_93614392_93616878_93617008_93621781_93621946_93622758
transcript_19261.known	chr15	+	1569	4	FSM	ENSMUSG00000022427.5	ENSMUST00000023062.5	1569	4	0	0	0	0	multi-exon	FALSE	canonical	3	903	junction_3	55.9305124437656	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTTGTTTTTATTGGTG	8178	False	NA	NA	False	AATAGA	-12	NA	79555061	79557601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_79555210_79555373_79555493_79556097_79556216_79556417
transcript_19264.known	chr15	+	595	3	FSM	ENSMUSG00000022427.5	ENSMUST00000229502.2	595	3	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	445.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTCTTACATGCCCATTG	8198	False	NA	5	True	AATAAA	-13	NA	79555081	79556766	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_79555210_79556097_79556216_79556417
transcript_19266.known	chr15	-	3440	4	FSM	ENSMUSG00000022426.7	ENSMUST00000023061.7	3440	4	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	10.9848380355227	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAAGTCTACTTGTCTGAT	NA	False	NA	-3	True	ATTAAA	-15	NA	79572120	79558451	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79560381_79561297_79561493_79561599_79561729_79570933
transcript_19267.known	chr15	+	3449	12	FSM	ENSMUSG00000042535.10	ENSMUST00000046463.10	3449	12	0	0	0	0	multi-exon	TRUE	canonical	3	199	junction_6	19.3826198026279	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGTCATGTTCCCTGCCC	NA	False	NA	17	True	AATAAA	-18	NA	79575045	79605680	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_79575300_79578356_79578469_79591192_79591374_79591895_79592245_79596296_79596421_79597564_79597680_79600047_79600193_79600286_79600470_79601183_79601320_79601795_79601975_79603228_79603430_79604210
transcript_19272.nic	chr15	-	1546	5	ISM	ENSMUSG00000022420.17	ENSMUST00000162713.9	1357	7	2498	-684	-7	0	3prime_fragment	FALSE	canonical	3	63	junction_3	39.8591269347436	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	236	False	NA	NA	False	ATTAAA	-17	NA	79658675	79645653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_-_79646727_79647710_79647795_79649016_79649223_79649987_79650055_79658559
transcript_19273.nic	chr15	-	1597	5	NIC	ENSMUSG00000022420.17	novel	1357	7	NA	NA	-7	0	intron_retention	FALSE	canonical	2	4	junction_1	55.4363373609765	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	236	False	NA	NA	False	ATTAAA	-17	NA	79658675	79645653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_79646778_79647710_79647795_79649016_79649223_79649987_79650055_79658559
transcript_19274.known	chr15	-	1472	4	FSM	ENSMUSG00000022420.17	ENSMUST00000023055.8	1472	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	38.6091526281874	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	243	False	NA	NA	False	ATTAAA	-17	NA	79658668	79645653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79646727_79647710_79647795_79649016_79649223_79658559
transcript_19276.known	chr15	-	1011	5	FSM	ENSMUSG00000022420.17	ENSMUST00000069877.12	1011	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	59.2637114936282	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTGTGGTGTATTGA	327	False	NA	NA	False	ATTAAA	-17	NA	79658584	79645653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79646251_79646627_79646727_79647710_79647795_79649016_79649223_79658559
transcript_19277.known	chr15	-	5806	5	FSM	ENSMUSG00000089715.13	ENSMUST00000109627.8	5806	5	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	17.0367250374008	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCCCCCTGGATGGGG	NA	False	NA	-4	True	AATAAA	-22	NA	79718889	79708096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79713180_79717712_79717780_79717902_79717969_79718115_79718160_79718343
transcript_19278.known	chr15	-	546	5	FSM	ENSMUSG00000089715.13	ENSMUST00000127721.8	546	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	65.9445790038878	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATCTCCAATTTGTCCAA	NA	False	NA	NA	False	NA	NA	NA	79718526	79716772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79716959_79717712_79717780_79717902_79717969_79718115_79718160_79718343
transcript_19279.nic	chr15	+	1981	9	NIC	ENSMUSG00000009585.19	novel	826	5	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	95	junction_1	219.175122618878	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAAGTTGTGCATGATTG	7471	False	NA	6	True	NA	NA	NA	79775828	79792119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_79776024_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
transcript_19283.known	chr15	+	2459	9	FSM	ENSMUSG00000009585.19	ENSMUST00000109620.10	2459	9	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_5	144.740284648055	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	CTGTCTCAAAAAAAAAAAAA	8251	False	NA	NA	False	NA	NA	NA	79776608	79792630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79783220_79783320_79789644_79789802_79790541_79790804_79791051_79791165_79791504
transcript_19285.nic	chr15	+	1882	8	NIC	ENSMUSG00000009585.19	novel	826	5	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_4	278.410209758836	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAAGTTGTGCATGATTG	7471	False	NA	6	True	NA	NA	NA	79775828	79792119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_79776024_79779611_79779760_79781895_79782173_79782311_79782427_79789644_79789802_79790541_79790804_79791051_79791165_79791504
transcript_19287.known	chr15	+	1977	8	FSM	ENSMUSG00000009585.19	ENSMUST00000175752.8	1977	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	224.554434107971	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCCCCTCACCCATCAGA	8291	False	NA	NA	False	AATAAA	-15	NA	79776648	79792287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_79776771_79779611_79779760_79781895_79782173_79782311_79782427_79789644_79789802_79790541_79790804_79791051_79791165_79791504
transcript_19296.nic	chr15	-	2955	7	NIC	ENSMUSG00000053411.17	novel	2899	7	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	156	junction_1	121.853737461488	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTCTGTGTGTCTGGTTG	NA	False	NA	-7	True	ATTAAA	-24	NA	79855330	79800007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_79802252_79802477_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
transcript_193.known	SIRV7	-	949	5	FSM	SIRV7A	SIRV706	949	5	0	0	0	0	multi-exon	FALSE	canonical	3	3147	junction_1	1522.61994601411	644	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGAGATCGACGAAGTT	NA	False	NA	NA	False	NA	NA	NA	147957	56031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV7_-_56098_70883_70988_78841_78964_114680_114989_147608
transcript_19302.known	chr15	-	528	6	FSM	ENSMUSG00000053411.17	ENSMUST00000132821.8	528	6	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_5	93.730251253264	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGGACACCCACGCTCC	NA	False	NA	NA	False	NA	NA	NA	79855319	79802649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79855069
transcript_19304.known	chr15	-	710	6	FSM	ENSMUSG00000053411.17	ENSMUST00000109615.8	710	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_5	106.136892737634	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTGGGCAGATGGGGACA	NA	False	NA	NA	False	NA	NA	NA	79816741	79802310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79802678_79802953_79803027_79805572_79805640_79807672_79807739_79814786_79814831_79816648
transcript_19309.known	chr15	-	2944	7	FSM	ENSMUSG00000000489.8	ENSMUST00000000500.8	2944	7	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_6	4.63381292481928	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACGTGAATCTGTGTGTTG	NA	False	NA	NA	False	AAAAAG	-14	NA	79899009	79880074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79881459_79881756_79881906_79884529_79884675_79885882_79886089_79887525_79887616_79889669_79889767_79898136
transcript_19314.known	chr15	+	819	4	FSM	ENSMUSG00000022415.13	ENSMUST00000009728.13	819	4	0	0	0	0	multi-exon	FALSE	canonical	3	1267	junction_2	72.7232195840274	397	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGCCTGTGTGGATTA	NA	False	NA	18	True	NA	NA	NA	79975534	79997642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_79975694_79994644_79994883_79995799_79995946_79997366
transcript_19318.known	chr15	-	1351	10	FSM	ENSMUSG00000060036.15	ENSMUST00000081650.15	1351	10	0	0	0	0	multi-exon	FALSE	canonical	3	16287	junction_9	4874.04926341766	68664	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTTTCCCACATTTCTTT	3518	False	NA	-1	True	AATAAA	-17	NA	79967607	79961991	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965233_79965815_79965985_79966590_79966784_79967524
transcript_19319.known	chr15	-	1877	9	FSM	ENSMUSG00000060036.15	ENSMUST00000187578.2	1877	9	0	0	0	0	multi-exon	FALSE	canonical	3	16287	junction_8	5123.08483118326	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGTTTTCCCACATTT	3571	False	NA	-5	True	AATAAA	-13	NA	79967554	79961995	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964052_79964566_79964754_79965096_79965985_79966590_79966784_79967524
transcript_1932.known	chr1	+	4173	13	FSM	ENSMUSG00000026280.18	ENSMUST00000027502.16	4173	13	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_10	29.445217495093	226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGCTTCTTGAGTTCTG	NA	False	NA	NA	False	NA	NA	NA	93682626	93718332	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_93682777_93695774_93695877_93695974_93696047_93701491_93701591_93702854_93702957_93703349_93703423_93706006_93706087_93708439_93708634_93712133_93712213_93712474_93712621_93713631_93713689_93714232_93714327_93715407
transcript_19320.known	chr15	-	1781	8	FSM	ENSMUSG00000060036.15	ENSMUST00000188025.7	1781	8	0	0	0	0	multi-exon	FALSE	canonical	3	23824	junction_4	2825.56158044697	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGGTTTTCCCACATTTC	4341	False	NA	-4	True	AATAAA	-14	NA	79966784	79961994	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_79962096_79962187_79962308_79962531_79962628_79962907_79963010_79963890_79964754_79965096_79965233_79965815_79965985_79966590
transcript_19321.known	chr15	+	2964	11	FSM	ENSMUSG00000022414.9	ENSMUST00000023050.9	2964	11	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	7.29109045342327	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCATCTTGTCTATCTG	4993	False	NA	15	True	AGTAAA	-1	NA	80017327	80045908	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_80017390_80032427_80032565_80032887_80033042_80033982_80034070_80034627_80034767_80036865_80036980_80037832_80037945_80039957_80040103_80041804_80042028_80042951_80043109_80044274
transcript_19323.known	chr15	+	5148	6	FSM	ENSMUSG00000022412.15	ENSMUST00000023048.12	5148	6	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	35.3361005205724	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACGTGTCTATGTGGT	2753	False	NA	16	True	AATAAA	-18	NA	80118218	80137572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_80118383_80120005_80120355_80130937_80131089_80132074_80132253_80132441_80132705_80133529
transcript_19324.known	chr15	+	659	4	FSM	ENSMUSG00000042406.9	ENSMUST00000229828.2	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	614.772044473939	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTGATCTTTTTGCC	4146	False	NA	NA	False	NA	NA	NA	80139385	80140960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_80139486_80139768_80139887_80140407_80140723_80140834
transcript_19326.known	chr15	+	1725	3	FSM	ENSMUSG00000042406.9	ENSMUST00000109605.5	1725	3	0	0	0	0	multi-exon	FALSE	canonical	3	1292	junction_2	43	2203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATGTGGGTTTTCAGTGT	4145	False	NA	32	True	AATAAA	-20	NA	80139384	80141742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_80139887_80140407_80140723_80140834
transcript_19327.known	chr15	-	525	5	FSM	ENSMUSG00000051518.9	ENSMUST00000230189.2	525	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	375.465377897883	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCAGCTAGACTTCCTGG	NA	False	NA	NA	False	NA	NA	NA	80148447	80145195	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_80145332_80145497_80145596_80147892_80148029_80148183_80148319_80148427
transcript_19329.known	chr15	-	838	4	FSM	ENSMUSG00000051518.9	ENSMUST00000052499.9	838	4	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_3	66.5181679443043	685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCAAGTGTGTGTGTGTG	NA	False	NA	-5	True	AATAAA	-25	NA	80148516	80144815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_80145332_80145497_80145596_80148183_80148319_80148427
transcript_19333.nic	chr15	+	534	5	ISM	ENSMUSG00000047888.11	ENSMUST00000067689.9	17332	25	-58	82332	-58	-22735	5prime_fragment	FALSE	canonical	1	2	junction_2	3.57071421427143	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCACCCAGAAGGTGAG	NA	False	NA	NA	False	GATAAA	-10	NA	80595455	80742954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_+_80595690_80631606_80631675_80643740_80643832_80668939_80669008_80742881
transcript_19334.nic	chr15	+	286	2	ISM	ENSMUSG00000047888.11	ENSMUST00000226857.2	3240	5	-50	22735	-50	-22735	5prime_fragment	FALSE	canonical	3	10	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCACCCAGAAGGTGAG	NA	False	NA	NA	False	GATAAA	-10	NA	80682792	80742954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_+_80683006_80742881
transcript_19338.known	chr15	+	3711	13	FSM	ENSMUSG00000022407.11	ENSMUST00000023043.10	3711	13	0	0	0	0	multi-exon	FALSE	canonical	3	932	junction_8	68.052471585453	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAGCCAGAGGTGCAGAGC	NA	False	NA	NA	False	AGTAAA	-13	NA	80832690	80855147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80840413_80840494_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80847931_80848080_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
transcript_19339.known	chr15	+	1932	11	FSM	ENSMUSG00000022407.11	ENSMUST00000166711.8	1932	11	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	319.033289799043	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAACAAACAAAAAGAATG	NA	False	NA	NA	False	NA	NA	NA	80832712	80853320	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_80832902_80836397_80836602_80839820_80839866_80844595_80844768_80845556_80845604_80846896_80846988_80847860_80848229_80850292_80850384_80851312_80851403_80851789_80851967_80852862
transcript_19340.known	chr15	+	2997	22	FSM	ENSMUSG00000042303.20	ENSMUST00000139517.9	2997	22	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_4	14.7956603308487	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTTGTTTTATTTTAA	NA	False	NA	7	True	AATACA	-17	NA	80861965	80896491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_80862067_80886769_80886866_80887560_80887647_80888004_80888072_80890607_80890814_80890906_80891015_80891647_80891792_80892051_80892248_80892489_80892636_80892884_80893110_80893424_80893480_80893607_80893736_80893834_80893991_80894141_80894197_80894429_80894480_80894610_80894764_80894917_80894989_80895061_80895111_80895186_80895273_80895438_80895562_80895662_80895724_80895856
transcript_19344.known	chr15	+	401	5	FSM	ENSMUSG00000042303.20	ENSMUST00000137004.2	401	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	66.5972033947372	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACATTTGGCTTTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	80862037	80888386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_80862067_80886769_80886866_80887560_80887647_80888004_80888072_80888263
transcript_19348.nnic	chr15	-	1627	9	NNC	ENSMUSG00000022404.9	novel	1724	9	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_6	109.401496790492	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAAGTTGCTCTTGATT	6864	False	NA	-10	True	AATAAA	-27	NA	81244997	81203111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136_81222208_81224174_81224242_81228301_81228363_81244877
transcript_19350.known	chr15	-	1724	9	FSM	ENSMUSG00000022404.9	ENSMUST00000023040.9	1724	9	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_6	19.7638400873919	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAAGTTGCTCTTGATT	6848	False	NA	-10	True	AATAAA	-27	NA	81245013	81203111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81203978_81207810_81207894_81211241_81211338_81211417_81211564_81213250_81213368_81222136_81222289_81224174_81224242_81228301_81228363_81244877
transcript_19354.known	chr15	-	843	8	FSM	ENSMUSG00000022404.9	ENSMUST00000231140.2	843	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	118.944679303842	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGAGACGCAGGTGCTGC	6883	False	NA	NA	False	NA	NA	NA	81244978	81203811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81203978_81207810_81207894_81211241_81211338_81213250_81213368_81222136_81222289_81224174_81224242_81228301_81228363_81244877
transcript_19360.known	chr15	-	3346	12	FSM	ENSMUSG00000022403.16	ENSMUST00000172107.8	3346	12	0	0	0	0	multi-exon	FALSE	canonical	3	2366	junction_3	110.211442162196	641	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTGACCTTCCCCCATTT	NA	False	NA	-19	True	AATAAA	-18	NA	81284244	81247869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81249780_81250547_81250691_81253594_81253644_81255658_81255776_81259004_81259108_81261888_81262000_81262116_81262202_81267180_81267248_81272530_81272602_81273851_81273925_81276465_81276524_81283685
transcript_19363.nic	chr15	+	947	3	ISM	ENSMUSG00000022401.13	ENSMUST00000167799.2	771	5	-59	10203	0	1	5prime_fragment	FALSE	canonical	3	38	junction_2	12.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTCTGGCCTTTCAA	NA	False	NA	NA	False	CATAAA	-18	NA	81284338	81312156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_+_81284489_81298632_81298750_81311476
transcript_19365.known	chr15	+	1675	5	FSM	ENSMUSG00000022400.10	ENSMUST00000023036.7	1675	5	0	0	0	0	multi-exon	FALSE	canonical	3	4160	junction_1	231.400491572512	2981	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTGTGTCATTTTCACC	NA	False	NA	17	True	NA	NA	NA	81350496	81360570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_81350652_81352355_81352435_81355152_81355224_81358043_81358130_81359286
transcript_19366.known	chr15	+	651	5	FSM	ENSMUSG00000022400.10	ENSMUST00000230062.2	651	5	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_1	1851.90407081468	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACGAGGAACCTGTCAGA	NA	False	NA	NA	False	NA	NA	NA	81350841	81359587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_81350956_81352355_81352435_81355152_81355224_81358043_81358130_81359286
transcript_19371.known	chr15	+	555	3	FSM	ENSMUSG00000022400.10	ENSMUST00000230219.2	555	3	0	0	0	0	multi-exon	FALSE	canonical	3	4160	junction_1	326.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGACCATTTAAGGCCTTG	NA	False	NA	NA	False	AAAACA	-27	NA	81350544	81355521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_81350652_81352355_81352435_81355152
transcript_19372.known	chr15	+	3487	17	FSM	ENSMUSG00000022394.15	ENSMUST00000023029.15	3487	17	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_15	40.713125570877	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGATGATATCAGATGAGT	NA	False	NA	17	True	AATAAA	-24	NA	81548089	81572516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_81548226_81551359_81551598_81552830_81552965_81554327_81554452_81555268_81555349_81559715_81559834_81560458_81560594_81561025_81561115_81566120_81566353_81566771_81566849_81567153_81567259_81568043_81568192_81568501_81568585_81568914_81569150_81569581_81569648_81570411_81570523_81571140
transcript_19375.known	chr15	-	2548	6	FSM	ENSMUSG00000063765.13	ENSMUST00000072910.6	2548	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	13.905394636615	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTAGCATTAGTGCTAGC	4995	False	NA	NA	False	NA	NA	NA	81581488	81570365	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81570604_81576308_81576508_81577187_81577355_81577734_81579445_81580050_81580226_81581429
transcript_19376.known	chr15	-	1095	3	FSM	ENSMUSG00000063765.13	ENSMUST00000173898.2	1095	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	12.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAAACCAAAATACC	8075	False	NA	NA	False	NA	NA	NA	81578408	81570381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81570604_81576308_81576508_81577734
transcript_19377.nnic	chr15	-	2894	16	NNC	ENSMUSG00000022391.17	novel	3033	16	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_5	202.347182392595	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCCGGAAGCTTCTTTC	NA	False	NA	-9	True	AATAAA	-20	NA	81614135	81588453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593738_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
transcript_19378.known	chr15	-	3033	16	FSM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	0	0	0	0	multi-exon	FALSE	canonical	3	698	junction_15	51.7762708412089	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCCCGGAAGCTTCTTTC	NA	False	NA	-9	True	AATAAA	-20	NA	81614204	81588453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613912
transcript_1938.known	chr1	-	5558	6	FSM	ENSMUSG00000026279.15	ENSMUST00000190116.7	5558	6	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_4	24.3770383763081	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACAAAAGCAGA	NA	False	NA	NA	False	NA	NA	NA	93682502	93629656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93653039_93677568_93678708_93682178
transcript_19381.nic	chr15	+	864	4	ISM	ENSMUSG00000022390.12	ENSMUST00000229044.2	4618	15	15	14965	15	-2973	5prime_fragment	FALSE	canonical	3	266	junction_2	6.68331255192114	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTGGTTTGAGTTTTTT	1963	False	NA	NA	False	NA	NA	NA	81629272	81653680	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_+_81629548_81652195_81652255_81653033_81653068_81653184
transcript_19382.nic	chr15	-	562	2	ISM	ENSMUSG00000022391.17	ENSMUST00000052374.13	3033	16	120	19990	-3	-5453	5prime_fragment	FALSE	canonical	3	698	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAAACAGTGTCCTGGTC	NA	False	NA	NA	False	NA	NA	NA	81614084	81608443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_-_81608834_81613912
transcript_19383.known	chr15	-	2984	17	FSM	ENSMUSG00000022391.17	ENSMUST00000170134.9	2984	17	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_16	270.05335121046	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGAAGCTTCTTTCATCAA	NA	False	NA	-4	True	AATAAA	-25	NA	81614102	81588448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81589460_81589653_81589776_81589860_81589950_81590601_81590705_81593687_81593808_81594561_81594755_81595674_81595760_81595842_81595943_81596222_81596337_81597019_81597179_81600767_81600903_81602943_81603124_81604807_81604868_81606099_81606228_81608686_81608834_81613417_81613466_81613912
transcript_19384.known	chr15	-	1115	2	FSM	ENSMUSG00000097613.2	ENSMUST00000181220.2	1115	2	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTTCATGTATTTATTTTG	7404	False	NA	NA	False	NA	NA	NA	81686814	81684991	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81685903_81686610
transcript_1939.known	chr1	-	713	5	FSM	ENSMUSG00000026279.15	ENSMUST00000189728.7	713	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	175.089262948931	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTAGACTGTACATTTT	NA	False	NA	2	True	AATAAA	-41	NA	93659648	93633108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_93633378_93642619_93642724_93644353_93644464_93652878_93653039_93659578
transcript_19390.known	chr15	-	1663	4	FSM	ENSMUSG00000061360.9	ENSMUST00000023117.10	1663	4	0	0	0	0	multi-exon	FALSE	canonical	3	1228	junction_3	69.0426599204354	588	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCCAAGAAAAAATTCATGG	NA	False	NA	NA	False	AATAAA	-22	NA	81756112	81748720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81750094_81754532_81754700_81755366_81755391_81756013
transcript_19394.known	chr15	+	2918	18	FSM	ENSMUSG00000022477.14	ENSMUST00000023116.7	2918	18	0	0	0	0	multi-exon	FALSE	canonical	3	1727	junction_10	137.479737418618	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGCCTGAGTGATTGA	NA	False	NA	19	True	AAAAAG	-16	NA	81756509	81799334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_81756750_81773498_81773636_81779370_81779630_81783329_81783423_81787676_81787836_81788056_81788208_81788963_81789069_81790052_81790145_81791626_81791733_81793690_81793849_81794042_81794117_81794613_81794726_81796086_81796210_81796406_81796563_81797306_81797499_81797880_81798014_81798438_81798561_81798828
transcript_1940.known	chr1	-	2001	3	FSM	ENSMUSG00000026279.15	ENSMUST00000189173.2	2001	3	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	9	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGTAC	NA	False	NA	NA	False	NA	NA	NA	93682372	93652370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_93653039_93677568_93678708_93682178
transcript_19407.known	chr15	-	1290	6	FSM	ENSMUSG00000022476.9	ENSMUST00000230765.2	1290	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_5	105.973581613532	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACTTGGGAAAGTAGAGAG	697	False	NA	NA	False	NA	NA	NA	81810172	81800770	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81800867_81801400_81801603_81802468_81802533_81802875_81802963_81806609_81806707_81809428
transcript_19409.known	chr15	-	2542	6	FSM	ENSMUSG00000022476.9	ENSMUST00000023113.7	2542	6	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_5	12.0432553738597	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGCTGTCATCAAAAATAAA	428	False	NA	NA	False	AATAAA	-17	NA	81810441	81799229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81800867_81801400_81801603_81802468_81802533_81802875_81802963_81806609_81806707_81809986
transcript_19411.known	chr15	+	351	3	FSM	ENSMUSG00000022477.14	ENSMUST00000157003.8	351	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	883.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTAGCCTATGCTCTCTG	NA	False	NA	NA	False	NA	NA	NA	81756684	81773890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_81756750_81773498_81773581_81773686
transcript_19414.known	chr15	-	1291	9	FSM	ENSMUSG00000022474.16	ENSMUST00000229385.2	1291	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	470.161341988046	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845043	81835308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81838572_81838652_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
transcript_19418.known	chr15	-	1300	8	FSM	ENSMUSG00000022474.16	ENSMUST00000023112.12	1300	8	0	0	0	0	multi-exon	FALSE	canonical	3	940	junction_3	83.919543587405	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845131	81835308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
transcript_19421.known	chr15	-	1059	7	FSM	ENSMUSG00000022474.16	ENSMUST00000071462.7	1059	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	406.121355699938	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTGGTGTTTGCTCTGTC	NA	False	NA	-3	True	ATTAAA	-14	NA	81845070	81835308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81835814_81836124_81836241_81836925_81837002_81839849_81839950_81840369_81840462_81842096_81842112_81844915
transcript_19423.known	chr15	-	612	5	FSM	ENSMUSG00000022474.16	ENSMUST00000230229.2	612	5	0	0	0	0	multi-exon	FALSE	canonical	3	1051	junction_1	37.9300342736465	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTACTGTGTGTCATTTC	NA	False	NA	-4	True	NA	NA	NA	81845034	81839743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81839950_81840369_81840462_81840562_81840640_81841993_81842112_81844915
transcript_19424.known	chr15	+	456	1	FSM	ENSMUSG00000061848.6	ENSMUST00000072779.6	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGACTTCTCATTATTTT	6274	False	NA	NA	False	AAGAAA	-29	NA	81856590	81857046	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_81856600_81857000
transcript_19425.known	chr15	+	1024	1	FSM	ENSMUSG00000061633.4	ENSMUST00000074608.4	1024	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	134	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGAGTGCATTCTTAAA	6326	False	NA	9	True	AATAAA	-17	NA	81864740	81865764	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_81864700_81865800
transcript_19428.known	chr15	+	2114	13	FSM	ENSMUSG00000022471.15	ENSMUST00000069530.13	2114	13	0	0	0	0	multi-exon	TRUE	canonical	3	579	junction_9	64.3868516598433	566	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGCACTTTTCAGTAT	NA	False	NA	29	True	AATAAA	-15	NA	81900569	81924286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_81900677_81901310_81901400_81903181_81903295_81906645_81906785_81907007_81907263_81909705_81909890_81911425_81911613_81913322_81913492_81913763_81913926_81915333_81915464_81919877_81919979_81921657_81921772_81923922
transcript_19439.known	chr15	-	2934	6	FSM	ENSMUSG00000022472.17	ENSMUST00000152227.8	2934	6	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_5	9.30806102257608	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGGTAAGTTGCTTGA	NA	False	NA	-9	True	AATAAA	-16	NA	81900364	81876723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81879047_81882310_81882434_81883705_81883816_81886741_81886812_81887958_81887981_81900078
transcript_19441.known	chr15	-	2854	5	FSM	ENSMUSG00000022472.17	ENSMUST00000146628.8	2854	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	75.5016556109864	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGGTAAGTTGCTTGA	NA	False	NA	-9	True	AATAAA	-16	NA	81900354	81876723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81879047_81882310_81882434_81883705_81883816_81887958_81887981_81900078
transcript_19443.known	chr15	-	2077	3	FSM	ENSMUSG00000063480.9	ENSMUST00000080622.9	2077	3	0	0	0	0	multi-exon	FALSE	canonical	3	3045	junction_2	110	821	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGGGTTTTGCCTGTTT	4906	False	NA	NA	False	NA	NA	NA	81931799	81924725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_81926570_81928097_81928219_81931687
transcript_19446.known	chr15	+	745	7	FSM	ENSMUSG00000068114.8	ENSMUST00000229597.2	745	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	17.2666988416689	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGGATTTCAAGATCCCAG	NA	False	NA	NA	False	NA	NA	NA	82012207	82025160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_82012251_82014252_82014372_82015624_82015747_82015917_82016031_82018781_82018964_82019270_82019343_82025066
transcript_19448.known	chr15	+	2046	7	FSM	ENSMUSG00000068114.8	ENSMUST00000089174.6	2046	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	6.64371047599825	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGTCTTTGGCTTCTTTT	NA	False	NA	25	True	AATAAA	-36	NA	82012122	82026404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_82012251_82014252_82014372_82015624_82015747_82015945_82016031_82018781_82018964_82019270_82019343_82025066
transcript_19450.known	chr15	+	5077	19	FSM	ENSMUSG00000022463.9	ENSMUST00000023100.8	5077	19	0	0	0	0	multi-exon	FALSE	canonical	3	437	junction_18	78.7541886011292	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAAGGCTGTGTGAGTCTG	2173	False	NA	25	True	AATAAA	-21	NA	82031381	82089580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_82031692_82053938_82054356_82055302_82055485_82056953_82057101_82059297_82059520_82061356_82061472_82061606_82061789_82062917_82063111_82063566_82063749_82066181_82066459_82069464_82069635_82076406_82076576_82078245_82078364_82079115_82079226_82080360_82080494_82081818_82081988_82083835_82084022_82087385_82087498_82087897
transcript_19454.known	chr15	+	1981	4	FSM	ENSMUSG00000022463.9	ENSMUST00000230105.2	1981	4	0	0	0	0	multi-exon	FALSE	canonical	3	662	junction_2	39.6176167324027	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGAGTTG	2243	False	NA	NA	False	NA	NA	NA	82031451	82058095	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_82031692_82053938_82054356_82055302_82055485_82056953
transcript_19455.known	chr15	-	1924	3	FSM	ENSMUSG00000068105.12	ENSMUST00000089161.10	1924	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	3	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGTGCCTGGGTGCTGTG	NA	False	NA	NA	False	AATAAA	-25	NA	82108554	82105943	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_82107478_82107919_82108124_82108368
transcript_19456.nic	chr15	-	898	6	NIC	ENSMUSG00000068101.12	novel	1202	6	NA	NA	-13	3	combination_of_known_junctions	FALSE	canonical	3	45	junction_5	488.753271088798	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTTGTAGATGCAGAAAC	NA	False	NA	-14	True	AAAAAG	-17	NA	82128624	82118276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128505
transcript_19457.known	chr15	-	1202	6	FSM	ENSMUSG00000068101.12	ENSMUST00000089157.11	1202	6	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_2	108.849253557386	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	82128949	82117979	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333_82128414_82128823
transcript_19459.known	chr15	-	593	5	FSM	ENSMUSG00000068101.12	ENSMUST00000230408.2	593	5	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_2	109.17045158833	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCGCTGGCCATGTGC	NA	False	NA	NA	False	NA	NA	NA	82128611	82118660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_82118711_82123493_82123586_82124079_82124160_82125527_82125621_82128333
transcript_19460.known	chr15	-	789	5	FSM	ENSMUSG00000068101.12	ENSMUST00000089155.6	789	5	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	529.66121247454	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTTGTAGATGCAGA	NA	False	NA	-17	True	AAAAAG	-14	NA	82128928	82118279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_82118711_82124079_82124160_82125527_82125621_82128333_82128414_82128823
transcript_19461.known	chr15	+	1413	6	FSM	ENSMUSG00000022455.5	ENSMUST00000023089.5	1413	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	3.32264954516723	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGCCTCCTGCCTTATT	2000	False	NA	NA	False	TTTAAA	-23	NA	82183154	82198824	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_82183270_82189871_82189981_82190244_82190387_82190546_82190640_82192723_82192829_82197975
transcript_19462.nic	chr15	-	1904	10	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_8	84.6325390536445	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGGTACTATGACCTG	1327	False	NA	0	True	AATAAA	-31	NA	82223044	82213732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221698_82222438_82222516_82222952
transcript_19463.known	chr15	-	1913	10	FSM	ENSMUSG00000022453.9	ENSMUST00000023088.8	1913	10	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_2	15.084944665313	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGGTACTATGACCTG	1344	False	NA	0	True	AATAAA	-31	NA	82223027	82213732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
transcript_19465.nnic	chr15	-	1846	9	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	2	29	junction_8	84.7758072801433	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGGTACTATGACCTG	1334	False	NA	0	True	AATAAA	-31	NA	82223037	82213732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222952
transcript_19467.nic	chr15	-	1776	9	NIC	ENSMUSG00000022453.9	novel	1913	10	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_6	86.2554346113913	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAGGGTACTATGACCTG	1309	False	NA	0	True	AATAAA	-31	NA	82223062	82213732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_82214409_82214855_82215000_82216533_82216732_82218986_82219149_82219697_82219793_82220043_82220222_82221587_82221724_82222438_82222516_82222952
transcript_19478.known	chr15	-	1020	7	FSM	ENSMUSG00000022453.9	ENSMUST00000230380.2	1020	7	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_3	11.7106314470608	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACAATTCTTTTCCTACTT	1388	False	NA	NA	False	NA	NA	NA	82222983	82218817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_82219149_82219697_82219793_82220043_82220222_82220970_82221143_82221587_82221724_82222438_82222516_82222952
transcript_19484.known	chr15	+	705	3	FSM	ENSMUSG00000022452.17	ENSMUST00000023086.15	705	3	0	0	0	0	multi-exon	FALSE	canonical	3	1353	junction_2	125	556	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGCTTGGTTGCACTTT	NA	False	NA	61	True	AATAAA	-43	NA	82230154	82233291	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_82230471_82232100_82232242_82233043
transcript_19485.nnic	chr15	+	737	3	NNC	ENSMUSG00000022452.17	novel	705	3	NA	NA	-64	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	801.5	590	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTCGTCCCCATTTCTCA	NA	False	NA	36	True	AATAAA	-18	NA	82230090	82233266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_82230471_82232100_82232242_82233050
transcript_19486.known	chr15	+	597	3	FSM	ENSMUSG00000022452.17	ENSMUST00000161892.2	597	3	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	632.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGCTTGGTTGCACTTTA	NA	False	NA	62	True	AATAAA	-44	NA	82230214	82233292	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_82230422_82232100_82232242_82233043
transcript_19487.nnic	chr15	+	663	3	NNC	ENSMUSG00000022452.17	novel	597	3	NA	NA	-39	6	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	44	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTCGTCCCCATTTCTCA	NA	False	NA	36	True	AATAAA	-18	NA	82230115	82233266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_82230422_82232100_82232242_82233050
transcript_19490.known	chr15	-	590	3	FSM	ENSMUSG00000022450.7	ENSMUST00000023085.7	590	3	0	0	0	0	multi-exon	FALSE	canonical	3	3916	junction_1	175	1587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTCTCTCTTACTT	6212	False	NA	-13	True	GATAAA	-21	NA	82238523	82234340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_82234573_82235179_82235296_82238281
transcript_19493.known	chr15	-	382	2	FSM	ENSMUSG00000022450.7	ENSMUST00000230494.2	382	2	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATTGCACTGGTGAACC	6280	False	NA	-37	True	AATAAA	-26	NA	82238455	82234364	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_82234573_82238281
transcript_19495.known	chr15	+	1371	12	FSM	ENSMUSG00000058586.13	ENSMUST00000078218.11	1371	12	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	9.92534113742268	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTCCAAGTGGCTGTTGTC	NA	False	NA	17	True	AATAAA	-18	NA	82984404	83000875	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_82984549_82985844_82985995_82986072_82986187_82986499_82986542_82986825_82986846_82987134_82987210_82988509_82988623_82989811_82989892_82996410_82996446_82998557_82998641_82999767_82999865_83000457
transcript_19501.known	chr15	-	4363	7	FSM	ENSMUSG00000018040.10	ENSMUST00000018184.10	4363	7	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_3	73.7437379639037	357	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	83007002	82997633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_83001173_83001749_83001949_83002277_83002376_83003385_83003504_83004092_83004219_83006032_83006176_83006862
transcript_19506.nnic	chr15	-	3245	10	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	15	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	199.638995176448	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	-11	True	AATAAA	-17	NA	83033570	83010176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_83011513_83011551_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
transcript_19507.nnic	chr15	-	3158	9	NNC	ENSMUSG00000041815.15	novel	3299	9	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	258.479901297954	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	-11	True	AATAAA	-17	NA	83033570	83010176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_83011513_83011551_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83022332_83022724_83033395
transcript_19508.known	chr15	-	3299	9	FSM	ENSMUSG00000041815.15	ENSMUST00000058793.14	3299	9	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_6	74.2839779158332	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGAGCTATAATGTCTTT	NA	False	NA	-11	True	AATAAA	-17	NA	83033585	83010176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83021668_83021756_83022332_83022724_83033395
transcript_19509.known	chr15	-	3157	8	FSM	ENSMUSG00000041815.15	ENSMUST00000100375.11	3157	8	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_6	194.457277192347	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTTGAGCTATAATGTCT	NA	False	NA	-13	True	AATAAA	-15	NA	83033532	83010178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_83012257_83013394_83013462_83015681_83015812_83016777_83016856_83017347_83017528_83019494_83019591_83022332_83022724_83033395
transcript_19513.known	chr15	-	2422	9	FSM	ENSMUSG00000018042.19	ENSMUST00000018186.16	2422	9	0	0	0	0	multi-exon	FALSE	canonical	3	1513	junction_1	61.7454451761423	398	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCAGCGTTTCTCTGGG	NA	False	NA	0	True	AGTAAA	-18	NA	83056793	83037694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_83038924_83043026_83043127_83044304_83044391_83044538_83044623_83045021_83045152_83046050_83046158_83046432_83046506_83050275_83050408_83056312
transcript_19515.known	chr15	+	2459	1	FSM	ENSMUSG00000116508.2	ENSMUST00000231106.2	2459	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGCCACCTGAGACTCTGC	NA	False	NA	NA	False	AATAAA	-18	NA	83056550	83059009	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_83056600_83059000
transcript_19516.known	chr15	-	1974	3	FSM	ENSMUSG00000047878.14	ENSMUST00000164614.3	1974	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	34	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTGGCTTTTTTTTTT	2266	False	NA	NA	False	NA	NA	NA	83135932	83111080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_83112796_83114714_83114859_83135817
transcript_19517.known	chr15	-	2092	3	FSM	ENSMUSG00000047878.14	ENSMUST00000049530.14	2092	3	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	20.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAATGCCTCATGGTCACA	2223	False	NA	-8	True	AATAAA	-16	NA	83135975	83110922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_83112796_83114714_83114859_83135900
transcript_19521.known	chr15	-	2461	16	FSM	ENSMUSG00000054277.9	ENSMUST00000226124.2	2461	16	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_5	14.6272196796095	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGATTTCAGATGACT	3598	False	NA	-108	True	AGTAAA	-26	NA	83234375	83184021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_83184904_83187303_83187426_83191081_83191173_83192253_83192378_83194450_83194583_83197669_83197814_83198540_83198670_83206774_83206915_83208304_83208352_83211805_83211866_83214719_83214808_83216886_83216971_83218678_83218811_83220854_83220928_83227222_83227342_83234281
transcript_19523.known	chr15	-	1186	3	FSM	ENSMUSG00000054277.9	ENSMUST00000226816.2	1186	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	31.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACGGTTGCCTGTGTTGTC	NA	False	NA	-27	True	AATATA	-15	NA	83189542	83183940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_83184904_83187303_83187426_83189441
transcript_19525.known	chr15	-	2270	4	FSM	ENSMUSG00000075511.10	ENSMUST00000100370.2	2270	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	6.97614984548545	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAGGAAAGATGAAG	250	False	NA	NA	False	NA	NA	NA	83251478	83241760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_83243152_83248020_83248130_83249229_83249712_83251190
transcript_19526.known	chr15	-	4969	3	FSM	ENSMUSG00000075511.10	ENSMUST00000178628.9	4969	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	23.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTCTCAAATGTTTGTCA	245	False	NA	0	True	NA	NA	NA	83251483	83238047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_83242239_83249229_83249715_83251190
transcript_19531.known	chr15	-	3186	11	FSM	ENSMUSG00000016664.17	ENSMUST00000165095.9	3186	11	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_10	172.10531659423	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGCATCCACCCTCAT	NA	False	NA	4	True	AATAAA	-31	NA	83317016	83260318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83316864
transcript_19532.known	chr15	-	3103	11	FSM	ENSMUSG00000016664.17	ENSMUST00000231184.2	3103	11	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_10	180.758512939225	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGCCTTGCATCCACCC	NA	False	NA	0	True	AATAAA	-27	NA	83317025	83260322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83316952
transcript_19533.known	chr15	-	3693	11	FSM	ENSMUSG00000016664.17	ENSMUST00000171436.8	3693	11	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_5	57.2486681067778	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTCACTTTGCTCAG	7107	False	NA	NA	False	AGTAAA	-19	NA	83348807	83259807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_83261932_83263199_83263397_83263884_83264008_83265962_83266085_83269187_83269309_83270862_83271039_83272715_83272872_83274623_83274860_83276701_83276859_83286067_83286201_83348659
transcript_19536.known	chr15	-	2060	12	FSM	ENSMUSG00000022442.17	ENSMUST00000016897.12	2060	12	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_11	7.21110255092798	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACTTTATCTTATTATT	NA	False	NA	NA	False	NA	NA	NA	83395094	83367969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_83368515_83373669_83373834_83376743_83376831_83380472_83380617_83381520_83381630_83382352_83382488_83384122_83384304_83386281_83386491_83389450_83389568_83389683_83389845_83390480_83390529_83394934
transcript_19539.known	chr15	+	942	5	FSM	ENSMUSG00000016758.5	ENSMUST00000016902.5	942	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	7.58287544405155	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCCTTAGGTCGTCCTCT	NA	False	NA	NA	False	AATAAA	-16	NA	83411062	83428835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_83411138_83425495_83425644_83427265_83427365_83427780_83427899_83428333
transcript_19542.known	chr15	+	837	4	FSM	ENSMUSG00000041736.8	ENSMUST00000047419.8	837	4	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	54.5119762580257	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTCTGTACTTAGTGGA	NA	False	NA	21	True	AATAAA	-21	NA	83447792	83458404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_83447846_83455585_83455797_83456400_83456540_83457970
transcript_19546.nnic	chr15	+	934	4	NNC	ENSMUSG00000041736.8	novel	837	4	NA	NA	6021	0	at_least_one_novel_splicesite	FALSE	canonical	3	99	junction_1	92.1013934024164	92	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGACTCTGTACTTAGTGGA	NA	False	NA	21	True	AATAAA	-21	NA	83454096	83458404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_83454247_83455585_83455797_83456400_83456540_83457970
transcript_19547.known	chr15	-	3774	14	FSM	ENSMUSG00000016757.12	ENSMUST00000016901.5	3774	14	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_9	15.0977093760069	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTCAGGTACTTCACATG	4671	False	NA	NA	False	AATATA	-19	NA	83479358	83459290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_83461250_83461947_83462087_83462835_83462905_83464268_83464351_83464695_83464848_83465868_83465981_83466245_83466441_83466546_83466664_83468856_83468934_83471051_83471186_83471274_83471435_83472703_83472903_83475579_83475750_83479149
transcript_19553.known	chr15	-	1319	8	FSM	ENSMUSG00000018865.10	ENSMUST00000229826.2	1319	8	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_2	10.0285307284481	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAAGTGCATTTCCAGGGG	NA	False	NA	NA	False	AATAAA	-16	NA	83989810	83961345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_83961784_83962969_83963099_83964387_83964527_83970800_83970896_83974159_83974287_83974792_83974874_83976490_83976622_83989631
transcript_19559.known	chr15	+	4629	15	FSM	ENSMUSG00000022437.8	ENSMUST00000023071.8	4629	15	0	0	0	0	multi-exon	FALSE	canonical	3	1573	junction_6	135.39963524504	2574	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACCATCGTCGATTGTGT	NA	False	NA	NA	False	NA	NA	NA	84076441	84101468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_84076586_84079944_84080056_84081205_84081308_84082774_84082863_84083973_84084081_84084493_84084625_84084830_84084919_84086430_84086560_84086969_84087042_84088209_84088297_84091071_84091143_84092033_84092102_84094684_84094832_84095237_84095380_84098326
transcript_19590.known	chr15	+	3784	13	FSM	ENSMUSG00000022438.7	ENSMUST00000023072.7	3784	13	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	7.38052994182818	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTGCTTTGATCAGACC	NA	False	NA	79	True	AATAAA	-16	NA	84116243	84199889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_84116388_84155431_84155522_84157699_84157771_84166962_84167066_84174587_84174729_84176982_84177099_84179757_84179817_84182166_84182187_84187608_84187671_84188035_84188105_84193053_84193156_84196903_84196977_84197155
transcript_19592.known	chr15	+	2619	13	FSM	ENSMUSG00000022439.10	ENSMUST00000023074.9	2619	13	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_2	5.54464205837992	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCATGACTTAATGACAGCC	NA	False	NA	NA	False	AATAAA	-20	NA	84208920	84227143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_84209033_84211188_84211285_84212495_84212561_84213064_84213168_84214223_84214365_84215179_84215296_84216491_84216548_84216891_84216915_84218542_84218602_84218786_84218856_84221985_84222088_84225054_84225128_84225539
transcript_19593.known	chr15	-	4426	1	FSM	ENSMUSG00000055745.5	ENSMUST00000069476.5	4426	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTCGTATCTGCTATA	5027	False	NA	-17	True	ATTAAA	-14	NA	84442024	84437598	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_84437600_84442000
transcript_19594.nnic	chr15	+	1722	9	NNC	ENSMUSG00000036106.16	novel	1830	8	NA	NA	-6448	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	42.0979141407267	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTCTGCCCCCTGGT	8422	False	NA	4	True	AATAAA	-14	NA	84547372	84587873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_84547463_84565400_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
transcript_19595.nnic	chr15	+	1716	9	NNC	ENSMUSG00000036106.16	novel	1830	8	NA	NA	-326	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	47.5861061655606	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTCTGCCCCCTGGT	NA	False	NA	4	True	AATAAA	-14	NA	84564876	84587873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_84564961_84565400_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
transcript_19596.nnic	chr15	+	1571	8	NNC	ENSMUSG00000036106.16	novel	1719	9	NA	NA	-6417	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	49.7864828799045	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTCTGCCCCCTGGT	8453	False	NA	4	True	AATAAA	-14	NA	84547403	84587873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_84547463_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
transcript_19597.known	chr15	+	1830	8	FSM	ENSMUSG00000036106.16	ENSMUST00000065499.5	1830	8	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_7	10.3844467687921	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCCTGTCTGCCCCCTGGT	NA	False	NA	4	True	AATAAA	-14	NA	84565202	84587873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_84565521_84572103_84572185_84577664_84577714_84577959_84578018_84583321_84583414_84583791_84583933_84585564_84585701_84586918
transcript_19598.known	chr15	+	1527	13	FSM	ENSMUSG00000078954.10	ENSMUST00000006029.11	1527	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	73.837800843019	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTTTTGTGCTTCTG	NA	False	NA	12	True	ATTAAA	-19	NA	84604252	84656408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_84604309_84614744_84614755_84617098_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
transcript_19599.nnic	chr15	+	1665	13	NNC	ENSMUSG00000078954.10	novel	1527	13	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	72.9552754927443	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTAGTGGGGGTTTTGTGCTT	NA	False	NA	9	True	ATTAAA	-16	NA	84604242	84656405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_84604309_84604580_84604715_84617091_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
transcript_19601.known	chr15	+	1544	12	FSM	ENSMUSG00000078954.10	ENSMUST00000172307.9	1544	12	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	58.989143138924	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTTTTGTGCTTCTG	NA	False	NA	12	True	ATTAAA	-19	NA	84604252	84656408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_84604329_84617091_84617231_84624908_84624997_84626093_84626226_84629969_84630057_84640538_84640638_84641220_84641332_84649873_84649948_84650511_84650590_84651301_84651431_84654197_84654302_84655981
transcript_19604.known	chr15	+	4766	8	FSM	ENSMUSG00000016619.11	ENSMUST00000165443.4	4766	8	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_4	38.703477668983	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTGGGTACTGTTCTGTT	NA	False	NA	19	True	AATAAA	-19	NA	84807611	84827164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_84807852_84811568_84811648_84813572_84813657_84817735_84817920_84819064_84819725_84821687_84821770_84822558_84822678_84823846
transcript_19608.nic	chr15	+	541	2	ISM	ENSMUSG00000022435.7	ENSMUST00000023070.7	1093	6	4024	0	4024	0	3prime_fragment	FALSE	canonical	3	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTCCAGAGTGAAAGGAG	NA	False	NA	NA	False	AATAAA	-13	NA	84905365	84906748	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_+_84905597_84906438
transcript_19614.known	chr15	+	2518	9	FSM	ENSMUSG00000022434.9	ENSMUST00000023069.9	2518	9	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	15.0742951742362	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGTGCTCAGTTTTTC	NA	False	NA	8	True	AATAAA	-15	NA	84921289	84947031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_84921446_84928980_84929037_84929820_84930074_84932559_84932782_84934894_84935024_84937771_84938058_84939854_84939888_84942942_84943027_84945732
transcript_19615.known	chr15	-	4047	25	FSM	ENSMUSG00000022432.8	ENSMUST00000023068.8	4047	25	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_19	18.7071269098764	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTACTCTGGTCTTGT	NA	False	NA	-6	True	TATAAA	-17	NA	85016165	84948889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_84949307_84950419_84950531_84951937_84952008_84953845_84953998_84954980_84955136_84955782_84955940_84970293_84970390_84973792_84973947_84975072_84975219_84976143_84976286_84980846_84980954_84981705_84981823_84982096_84982235_84991118_84991266_84994852_84995033_84996887_84997074_84998879_84999088_85000039_85000123_85004818_85004960_85005789_85006049_85007921_85008161_85011668_85011873_85011959_85012073_85013871_85014061_85016029
transcript_19624.known	chr15	+	3659	17	FSM	ENSMUSG00000006369.15	ENSMUST00000057410.14	3659	17	0	0	0	0	multi-exon	TRUE	canonical	3	136	junction_16	137.738202761616	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATGACGTTTTTATCATT	NA	False	NA	NA	False	AATAAA	-13	NA	85090149	85170736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_85090414_85106104_85106211_85108450_85108587_85111168_85111341_85113760_85113818_85114999_85115102_85115617_85115756_85116739_85116878_85121808_85121953_85122663_85122793_85123494_85123621_85124820_85124941_85126211_85126344_85128383_85128508_85147459_85147603_85149450_85149583_85169240
transcript_19625.known	chr15	+	2273	15	FSM	ENSMUSG00000006369.15	ENSMUST00000109432.4	2273	15	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_14	63.5701845785187	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTTGTACCTTGGTTT	NA	False	NA	35	True	AATAAA	-25	NA	85090205	85136086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_85090414_85106104_85106211_85108450_85108587_85111168_85111341_85113760_85113818_85114999_85115102_85115617_85115756_85116739_85116878_85121808_85121953_85122663_85122793_85123494_85123621_85124820_85124941_85126211_85126344_85128383_85128508_85135645
transcript_19628.known	chr15	+	1937	12	FSM	ENSMUSG00000016541.11	ENSMUST00000163242.3	1937	12	0	0	0	0	multi-exon	FALSE	canonical	3	1134	junction_3	91.244743989915	860	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGACCCTTGATTGGA	NA	False	NA	25	True	AATAAA	-33	NA	85220445	85347413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_85220782_85243654_85243847_85249477_85249561_85259522_85259620_85260744_85260904_85267104_85267186_85271191_85271358_85275838_85275948_85277537_85277708_85322302_85322367_85346480_85346669_85347121
transcript_19636.known	chr15	-	761	5	FSM	ENSMUSG00000064284.13	ENSMUST00000144067.8	761	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	131.723906334424	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGAGCTCTAGGTCTGGC	8138	False	NA	NA	False	NA	NA	NA	85695845	85691444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102_85695250_85695751
transcript_19637.known	chr15	-	997	5	FSM	ENSMUSG00000064284.13	ENSMUST00000071876.13	997	5	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_4	106.509389257473	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	8086	False	NA	0	True	ATTAAA	-15	NA	85695897	85691172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695102_85695250_85695839
transcript_19638.nnic	chr15	-	939	4	NNC	ENSMUSG00000064284.13	novel	997	5	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	154.740643228166	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGTTTGAGTCACTG	8093	False	NA	0	True	ATTAAA	-15	NA	85695890	85691172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_85691740_85692456_85692569_85693412_85693526_85695743
transcript_19639.known	chr15	-	566	4	FSM	ENSMUSG00000064284.13	ENSMUST00000150995.8	566	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	150.534602888062	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTGTATCCAGCTGGAG	8085	False	NA	NA	False	NA	NA	NA	85695898	85691457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_85691740_85692456_85692569_85693412_85693526_85695839
transcript_19640.known	chr15	-	421	4	FSM	ENSMUSG00000064284.13	ENSMUST00000154814.2	421	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_3	119.678272417715	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTTGCCCTCCCCCCAA	8123	False	NA	NA	False	NA	NA	NA	85695860	85692428	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_85692569_85693412_85693526_85695102_85695250_85695839
transcript_19642.known	chr15	+	3749	14	FSM	ENSMUSG00000035944.18	ENSMUST00000146088.8	3749	14	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	3.06729262113491	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAAATGTAAATAGCAGT	NA	False	NA	NA	False	TTTAAA	-6	NA	85716506	85743023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_85716621_85717347_85717426_85718690_85718773_85720220_85720393_85722906_85723081_85725665_85725742_85728652_85728773_85730531_85730592_85731835_85731875_85735717_85735800_85737020_85737187_85737785_85737946_85738176_85738251_85740671
transcript_19643.nnic	chr15	+	1872	6	NNC	ENSMUSG00000035944.18	novel	3749	14	NA	NA	18868	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	5.23832034148352	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAACCA	496	False	NA	NA	False	NA	NA	NA	85735412	85741934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_85735540_85735717_85735800_85737020_85737187_85737785_85737946_85738176_85738251_85740671
transcript_19646.known	chr15	+	2641	12	FSM	ENSMUSG00000022385.12	ENSMUST00000170629.3	2641	12	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_1	58.9672832668062	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATTATAAAGTTTATTAAA	7137	False	NA	-13	True	ATTAAA	-18	NA	85743945	85760731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_85743996_85744204_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
transcript_19647.known	chr15	+	2692	11	FSM	ENSMUSG00000022385.12	ENSMUST00000231074.2	2692	11	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_6	54.9377829913076	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGGACGTGTAGAGCTG	7338	False	NA	30	True	ATTAAA	-41	NA	85744146	85760774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_85744297_85746101_85746160_85746268_85746897_85748307_85748464_85751675_85751803_85752880_85753259_85755709_85755783_85757840_85758078_85759175_85759420_85759736_85759953_85760349
transcript_19649.known	chr15	+	1526	11	FSM	ENSMUSG00000022386.13	ENSMUST00000023019.12	1526	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_4	10.36532681588	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCATGTGTCTGGGGCTTG	NA	False	NA	NA	False	AATAAA	-14	NA	85763520	85781593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_85763660_85766874_85767041_85769286_85769394_85774405_85774529_85776767_85776941_85778026_85778081_85778154_85778222_85779126_85779228_85780560_85780706_85781035_85781119_85781225
transcript_19650.nnic	chr15	+	1482	11	NNC	ENSMUSG00000022386.13	novel	1526	11	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_4	13.076696830622	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGTCTGGGGCTTGCC	NA	False	NA	NA	False	AATAAA	-16	NA	85763507	85781595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_85763660_85766874_85767041_85769286_85769394_85774405_85774529_85776826_85776941_85778026_85778081_85778154_85778222_85779126_85779228_85780560_85780706_85781035_85781119_85781225
transcript_19656.known	chr15	+	3229	13	FSM	ENSMUSG00000051864.11	ENSMUST00000063414.9	3229	13	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_12	8.71779788708135	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTTTTTATTGCATT	NA	False	NA	8	True	AATAAA	-17	NA	86098659	86382704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_86098838_86118930_86118988_86119716_86120055_86123317_86123495_86176334_86176406_86183847_86183977_86185746_86185810_86195927_86196043_86235854_86235965_86250805_86250882_86275277_86275406_86333392_86333489_86381013
transcript_19659.known	chr15	+	933	3	FSM	ENSMUSG00000115930.2	ENSMUST00000229090.2	933	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTTGATGACAAGATTTAC	NA	False	NA	NA	False	NA	NA	NA	87127750	87138224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_87128261_87128725_87128758_87137833
transcript_1966.known	chr1	-	1003	5	FSM	ENSMUSG00000026281.16	ENSMUST00000027503.14	1003	5	0	0	0	0	multi-exon	FALSE	canonical	3	1212	junction_3	505.005136112495	958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGCTTTGGTTCTGCCCCT	2310	False	NA	-20	True	AATAAA	-24	NA	93729656	93720297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_93720666_93722447_93722646_93726101_93726193_93728523_93728633_93729419
transcript_19668.known	chr15	+	5425	3	FSM	ENSMUSG00000034333.16	ENSMUST00000041297.15	5425	3	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	12	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTGACTGATGATGGCTT	NA	False	NA	35	True	ATTAAA	-22	NA	88635862	88668719	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_88636006_88638962_88639137_88663611
transcript_1967.known	chr1	-	1055	2	FSM	ENSMUSG00000026281.16	ENSMUST00000112890.3	1055	2	0	0	0	0	multi-exon	FALSE	canonical	3	2511	junction_1	0	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACCCGGCTTGTTTTGTTT	2338	False	NA	NA	False	NA	NA	NA	93729628	93727786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_93728633_93729419
transcript_19670.known	chr15	-	2130	10	FSM	ENSMUSG00000035845.18	ENSMUST00000162183.8	2130	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	14.1691718917785	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGTGTCTTGTTGTTGGTC	9244	False	NA	0	True	AATAAA	-17	NA	88703521	88689446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_88690258_88690601_88690678_88690760_88690925_88695499_88695724_88696258_88696363_88698656_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
transcript_19676.known	chr15	-	1793	8	FSM	ENSMUSG00000035845.18	ENSMUST00000043087.15	1793	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	14.4193747210806	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGTGTCTTGTTGTTGGT	9277	False	NA	-1	True	AATAAA	-16	NA	88703488	88689447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_88690258_88690601_88690678_88690760_88690925_88698631_88698852_88699496_88699671_88700060_88700194_88700269_88700458_88703460
transcript_19677.known	chr15	+	1366	10	FSM	ENSMUSG00000023272.5	ENSMUST00000024042.5	1366	10	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_1	99.7619388566824	468	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGACGTGTTGGTTTGTTT	NA	False	NA	17	True	AATAAA	-26	NA	88703848	88710886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_88704038_88704133_88704217_88704731_88704843_88705337_88705430_88706161_88706339_88707269_88707366_88707944_88708029_88708850_88708947_88709352_88709494_88710589
transcript_1968.known	chr1	+	4533	8	FSM	ENSMUSG00000026283.14	ENSMUST00000027505.13	4533	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	74.6873756509937	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAACATTTGAAAGTAGA	NA	False	NA	NA	False	AATAAA	-12	NA	93731686	93749817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_93731762_93733769_93733842_93739503_93739671_93740128_93740241_93740387_93740482_93744096_93744233_93744359_93744422_93746002
transcript_19681.known	chr15	+	2427	6	FSM	ENSMUSG00000035828.12	ENSMUST00000042818.11	2427	6	0	0	0	0	multi-exon	TRUE	canonical	3	800	junction_3	47.4021096576935	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTCTGTTTATTGGACT	NA	False	NA	30	True	ATTAAA	-20	NA	88746388	88749929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_88746956_88747040_88747151_88747243_88747295_88747381_88747752_88748518_88748696_88748777
transcript_19683.nnic	chr15	-	490	2	NNC	ENSMUSG00000093394.2	novel	1234	2	NA	NA	314	13	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAGAGGAGAGACCCTT	NA	False	NA	NA	False	NA	NA	NA	88775372	88774697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_88775099_88775283
transcript_19684.known	chr15	-	1234	2	FSM	ENSMUSG00000093394.2	ENSMUST00000176618.2	1234	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCCAATGTGTGACAGT	NA	False	NA	-3	True	NA	NA	NA	88775719	88773982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_88775099_88775601
transcript_19685.known	chr15	-	485	2	FSM	ENSMUSG00000093394.2	ENSMUST00000176338.2	485	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88775686	88774715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_88775099_88775584
transcript_19686.nic	chr15	+	2498	14	ISM	ENSMUSG00000015365.16	ENSMUST00000146993.8	4133	27	-20	43250	-20	-11723	5prime_fragment	FALSE	canonical	3	36	junction_13	10.1817797586303	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATTATTTCCAGAAGAAAT	2887	False	NA	NA	False	AATAAA	-30	NA	88867091	88896101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043_88879229_88880258_88880400_88880871_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454_88889633_88889899_88889971_88891784_88891877_88895565
transcript_19687.nic	chr15	+	2038	12	ISM	ENSMUSG00000015365.16	ENSMUST00000146993.8	4133	27	-20	49213	-20	10864	5prime_fragment	TRUE	canonical	3	47	junction_4	7.60382678775509	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAGAACTACTCGTAAGCC	2887	False	NA	NA	False	AAAAAG	-18	NA	88867091	88890138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043_88879229_88880258_88880400_88880871_88881099_88881482_88881607_88882970_88883166_88888121_88888237_88889454_88889633_88889899
transcript_19688.known	chr15	+	845	5	FSM	ENSMUSG00000015365.16	ENSMUST00000156949.2	845	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	9.33742469849155	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTTAAAGAGTTGTAGT	2907	False	NA	NA	False	AATAAA	-17	NA	88867111	88879274	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_88867265_88869717_88869903_88872589_88872753_88878008_88878122_88879043
transcript_19689.known	chr15	+	2439	10	FSM	ENSMUSG00000015363.14	ENSMUST00000081702.12	2439	10	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	6.70175948888899	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGCTTTGTGAAGTGTATGG	NA	False	NA	9	True	AATAAA	-19	NA	88960215	88971280	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_88960345_88965182_88965248_88965555_88965635_88966153_88966321_88966853_88966995_88968900_88969012_88969105_88969246_88969476_88969650_88969728_88969841_88969958
transcript_1969.known	chr1	+	3232	10	FSM	ENSMUSG00000073609.10	ENSMUST00000097633.10	3232	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	12.154357040244	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTCTCCACACATTTAGT	NA	False	NA	NA	False	CATAAA	-27	NA	93752961	93780070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_93753042_93754006_93754363_93756927_93756986_93757478_93757619_93760317_93760512_93763008_93763178_93765661_93765806_93766542_93766686_93775824_93775991_93778288
transcript_19691.known	chr15	+	2396	10	FSM	ENSMUSG00000015363.14	ENSMUST00000169870.8	2396	10	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_3	29.0546526309673	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCCCGCTTTGTGAAGT	NA	False	NA	3	True	AATAAA	-13	NA	88960274	88971274	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_88960345_88965182_88965248_88965555_88965657_88966153_88966321_88966853_88966995_88968900_88969012_88969105_88969246_88969476_88969650_88969728_88969841_88969958
transcript_19692.known	chr15	+	1422	10	FSM	ENSMUSG00000015363.14	ENSMUST00000169891.8	1422	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	30.2985148150862	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCCAGGCTTCCCAGCA	NA	False	NA	NA	False	AATAAA	-16	NA	88960296	88970333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_88960345_88965182_88965248_88965555_88965635_88966153_88966321_88966853_88966995_88968900_88969012_88969105_88969246_88969476_88969661_88969728_88969841_88969958
transcript_19695.known	chr15	-	2412	20	FSM	ENSMUSG00000062906.13	ENSMUST00000082197.12	2412	20	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	5.98567079345711	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACATCTCTGTCTCCGTTAC	NA	False	NA	-3	True	AATAAA	-17	NA	89012903	89007509	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_89007683_89007767_89007928_89008021_89008205_89008377_89008457_89008734_89008792_89008915_89009008_89009514_89009600_89009699_89009953_89010028_89010094_89010177_89010285_89010414_89010505_89010580_89010641_89010843_89010910_89011071_89011199_89011352_89011422_89011588_89011694_89011796_89011895_89012124_89012222_89012387_89012523_89012592
transcript_19698.known	chr15	-	1808	12	FSM	ENSMUSG00000022610.11	ENSMUST00000088827.8	1808	12	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_5	1.87634249459548	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGTTGTGTGGCCCCAT	NA	False	NA	NA	False	AATAAA	-20	NA	89024824	89014786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_89015422_89016697_89016872_89016955_89017035_89017103_89017184_89017281_89017354_89018814_89018930_89019325_89019374_89019629_89019660_89019779_89019892_89021603_89021663_89024330_89024461_89024550
transcript_19699.known	chr15	-	2461	12	FSM	ENSMUSG00000053137.8	ENSMUST00000088823.5	2461	12	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_8	5.74096487412616	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGGCTCTGGATCCCAT	NA	False	NA	-13	True	AATAAA	-28	NA	89033831	89026689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_89028021_89028343_89028518_89028595_89028675_89029298_89029379_89029577_89029650_89030004_89030120_89030205_89030254_89030341_89030372_89030474_89030587_89030673_89030733_89030911_89031042_89033600
transcript_19700.nic	chr15	-	1980	20	NIC	ENSMUSG00000015377.11	novel	4585	20	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_9	23.4946802489415	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACAGTCTGGTCCCTGACT	NA	False	NA	-4	True	AGTAAA	-14	NA	89080702	89069019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89069851_89070196_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071202_89071350_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89080421
transcript_19701.known	chr15	-	4585	20	FSM	ENSMUSG00000015377.11	ENSMUST00000078953.9	4585	20	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_9	20.4859251730037	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTCTTTTAATATTTT	NA	False	NA	1	True	ATTAAA	-22	NA	89080651	89066415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_89069313_89069394_89069470_89069564_89069668_89069740_89069851_89070196_89070251_89070374_89070465_89070565_89070631_89070956_89071023_89071158_89071254_89071350_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89080421
transcript_19713.known	chr15	-	5261	16	FSM	ENSMUSG00000015377.11	ENSMUST00000229935.2	5261	16	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_11	12.9140750088163	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATACTTGTCTTTTAATA	NA	False	NA	-3	True	ATTAAA	-18	NA	89080699	89066419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_89069313_89069394_89069470_89069564_89069851_89070196_89070251_89070374_89070465_89070565_89071447_89071534_89071658_89072355_89072412_89072661_89072725_89072813_89072894_89072976_89073083_89073639_89073721_89074443_89074557_89075076_89075120_89075192_89075232_89080421
transcript_19714.known	chr15	+	1298	3	FSM	ENSMUSG00000054136.7	ENSMUST00000066991.7	1298	3	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	15	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGGCCACTCTCTTGTG	NA	False	NA	NA	False	ATTAAA	-19	NA	89206922	89208934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_89207337_89207479_89207604_89208174
transcript_19715.nic	chr15	-	2589	15	NIC	ENSMUSG00000022614.9	novel	2906	14	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	79.1957340120936	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTTACTAGTGGTTTTT	NA	False	NA	-7	True	AATAAA	-17	NA	89239859	89235345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766_89239021_89239558_89239614_89239788
transcript_19717.known	chr15	-	2906	14	FSM	ENSMUSG00000022614.9	ENSMUST00000023283.6	2906	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	66.7675469479281	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCTGCGGTGTGGCGAG	NA	False	NA	NA	False	AATAAA	-19	NA	89239862	89235206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238629_89238659_89238766_89239021_89239558
transcript_19720.known	chr15	-	2815	13	FSM	ENSMUSG00000022614.9	ENSMUST00000230112.2	2815	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	68.2647521704202	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATACCCATTTACTAGTGG	NA	False	NA	-12	True	AATAAA	-12	NA	89239836	89235350	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_89236091_89236185_89236283_89236355_89236468_89236561_89236731_89236806_89236990_89237061_89237159_89237236_89237343_89237412_89237548_89237659_89237802_89238031_89238211_89238285_89238501_89238658_89239021_89239558
transcript_19722.known	chr15	+	3302	20	FSM	ENSMUSG00000008690.16	ENSMUST00000088717.7	3302	20	0	0	0	0	multi-exon	FALSE	canonical	1	166	junction_15	242.636453884124	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTTGATCCTCTGGCT	NA	False	NA	6	True	AATAAA	-16	NA	89239938	89257029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_89240147_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254803_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
transcript_19724.known	chr15	+	3223	20	FSM	ENSMUSG00000008690.16	ENSMUST00000036987.12	3223	20	0	0	0	0	multi-exon	TRUE	canonical	1	145	junction_1	244.22211859964	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTTGATCCTCTGGCT	NA	False	NA	6	True	AATAAA	-16	NA	89239921	89257029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_89240054_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
transcript_19726.known	chr15	+	3255	20	FSM	ENSMUSG00000008690.16	ENSMUST00000145259.8	3255	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	269.960005245468	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGTTGATCCTCTGGCT	NA	False	NA	6	True	AATAAA	-16	NA	89239965	89257029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_89240130_89244558_89244661_89247633_89247690_89247807_89247893_89247968_89248038_89248124_89248205_89248290_89248446_89248815_89248900_89249436_89249535_89253586_89253659_89253818_89253886_89254010_89254119_89254227_89254282_89254440_89254512_89254597_89254692_89254806_89254879_89254955_89255012_89255094_89255197_89255296_89255447_89255513
transcript_19736.nic	chr15	-	1383	4	ISM	ENSMUSG00000022615.8	ENSMUST00000023285.5	2037	11	2875	-294	2875	294	3prime_fragment	FALSE	canonical	3	35	junction_3	10.6770782520313	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCATGTGCTCTGTAC	NA	False	NA	-7	True	ATTAAA	-14	NA	89258367	89255839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_-_89256669_89257625_89257806_89257885_89258027_89258134
transcript_19737.known	chr15	-	1145	3	FSM	ENSMUSG00000091780.4	ENSMUST00000167643.4	1145	3	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	1.5	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCATGTGCTCTGTAC	NA	False	NA	-7	True	ATTAAA	-14	NA	89258021	89255839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_89256669_89257625_89257806_89257885
transcript_19739.known	chr15	-	1250	2	FSM	ENSMUSG00000091780.4	ENSMUST00000228977.2	1250	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCTGTGCATGTGCTCTG	NA	False	NA	-10	True	ATTAAA	-11	NA	89258049	89255842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_89256669_89257625
transcript_19740.known	chr15	-	448	3	FSM	ENSMUSG00000078938.10	ENSMUST00000109314.9	448	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACCAAAGGACCCCTTTC	NA	False	NA	NA	False	AATAAA	-13	NA	89294466	89274376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_89274643_89281528_89281638_89294393
transcript_19741.known	chr15	-	2895	19	FSM	ENSMUSG00000078937.9	ENSMUST00000109313.9	2895	19	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_15	11.4655953418569	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCTCCATGGGACTAC	5216	False	NA	NA	False	AATAAA	-19	NA	89310066	89300607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_89301183_89301347_89301441_89302034_89302149_89302934_89303088_89303178_89303314_89303393_89303559_89304094_89304212_89304290_89304397_89304894_89305081_89305547_89305744_89306327_89306413_89306491_89306600_89307694_89307773_89307858_89307997_89308142_89308245_89308467_89308646_89308919_89309060_89309390_89309551_89310000
transcript_19745.known	chr15	-	1707	11	FSM	ENSMUSG00000022617.16	ENSMUST00000023289.13	1707	11	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_8	79.2225346729073	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1180	False	NA	NA	False	AATAAA	-23	NA	89314102	89310569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312748_89312916_89313031_89313251_89313361_89313579
transcript_19746.nnic	chr15	-	1252	11	NNC	ENSMUSG00000022617.16	novel	1707	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_8	106.87300875338	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1649	False	NA	NA	False	AATAAA	-23	NA	89313633	89310569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312762_89312916_89313031_89313251_89313361_89313579
transcript_19750.nic	chr15	-	1272	11	NIC	ENSMUSG00000022617.16	novel	1707	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_8	112.30422966211	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1649	False	NA	NA	False	AATAAA	-23	NA	89313633	89310569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89312782_89312916_89313031_89313251_89313361_89313579
transcript_19752.nic	chr15	-	1876	10	NIC	ENSMUSG00000022617.16	novel	1707	11	NA	NA	-19	0	intron_retention	FALSE	canonical	3	62	junction_3	105.224627451097	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1152	False	NA	NA	False	AATAAA	-23	NA	89314130	89310569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_89310865_89311013_89311096_89311526_89311603_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251_89313361_89313579
transcript_19754.known	chr15	-	1416	10	FSM	ENSMUSG00000022617.16	ENSMUST00000171140.8	1416	10	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_9	49.0736408087093	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAATACAGACTTAAGT	1640	False	NA	NA	False	AATAAA	-23	NA	89313642	89310569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_89310865_89311013_89311096_89311526_89311631_89311763_89311873_89311994_89312077_89312159_89312219_89312336_89312433_89312613_89313031_89313251_89313361_89313579
transcript_1976.known	chr1	+	2112	3	FSM	ENSMUSG00000051185.10	ENSMUST00000059975.8	2112	3	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	1	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAGCGTTCTAGTTGCC	NA	False	NA	NA	False	AATAAA	-20	NA	95241347	95263009	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_95241976_95252833_95252969_95261660
transcript_19765.known	chr15	+	5558	12	FSM	ENSMUSG00000022619.6	ENSMUST00000023291.6	5558	12	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	12.5005784990103	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTGTTGCTTATCTCAGT	1258	False	NA	11	True	AATAAA	-18	NA	89338115	89348671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_89338489_89339386_89339493_89340727_89341007_89341122_89341220_89341337_89342574_89342944_89343021_89343118_89343292_89343384_89343495_89344578_89344687_89344854_89344926_89345562_89345662_89345841
transcript_19767.known	chr15	-	3492	9	FSM	ENSMUSG00000022620.15	ENSMUST00000165199.8	3492	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_8	23.5358768691545	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCTTTTAGAAGCATCTAT	NA	False	NA	NA	False	NA	NA	NA	89361628	89356678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_89357761_89357871_89357975_89358209_89358338_89358430_89358556_89358742_89358913_89358989_89359209_89359324_89359566_89359710_89360859_89361352
transcript_1977.known	chr1	+	531	1	FSM	ENSMUSG00000081051.5	ENSMUST00000117288.2	531	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16998	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAGAGACCCACTGAATA	NA	False	NA	NA	False	NA	NA	NA	95426345	95426876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_95426300_95426900
transcript_19772.known	chr15	-	1640	9	FSM	ENSMUSG00000022621.17	ENSMUST00000023294.15	1640	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	5.95818764390649	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAAGGGTCTCAGTTACC	-11	True	NA	-4	True	AATAAA	-17	NA	89476126	89466735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_89467634_89467801_89467886_89468112_89468211_89468481_89468594_89470461_89470542_89471116_89471197_89472390_89472421_89474475_89474630_89476022
transcript_19778.known	chr15	-	1322	6	FSM	ENSMUSG00000022621.17	ENSMUST00000094056.12	1322	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	23.9949994790581	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACACTAAGGGTCTCAGT	1377	False	NA	-8	True	AATAAA	-13	NA	89476067	89466739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_89467634_89467801_89467886_89468112_89468211_89468546_89468594_89474475_89474630_89476022
transcript_1978.known	chr1	+	410	3	FSM	ENSMUSG00000097814.6	ENSMUST00000202118.2	410	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	4.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCCTCCTACCAGCTGGTG	NA	False	NA	NA	False	NA	NA	NA	96799957	96805626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_96800116_96800209_96800394_96805558
transcript_19780.known	chr15	-	697	4	FSM	ENSMUSG00000052560.16	ENSMUST00000014777.9	697	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGATTCTGGTTGTTGTGT	NA	False	NA	NA	False	NA	NA	NA	90563591	90527528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_90527917_90532780_90532828_90533445_90533487_90563370
transcript_19781.known	chr15	-	378	1	FSM	ENSMUSG00000067870.6	ENSMUST00000181935.2	378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15668	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTCGTGTCAAATAAAG	NA	False	NA	NA	False	NA	NA	NA	90648859	90648481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_90648500_90648900
transcript_19783.known	chr15	+	2041	13	FSM	ENSMUSG00000078932.9	ENSMUST00000190436.7	2041	13	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_9	6.39172642301489	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTCCAACTAGGAAGCAG	NA	False	NA	NA	False	NA	NA	NA	91083696	91145097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_91083802_91115782_91115823_91119943_91120083_91123134_91123268_91123620_91123670_91124845_91125023_91126772_91126889_91129815_91130334_91131061_91131132_91132717_91132779_91137065_91137130_91141563_91141647_91144611
transcript_19785.known	chr15	-	1870	5	FSM	ENSMUSG00000022634.10	ENSMUST00000133736.2	1870	5	0	0	0	0	multi-exon	TRUE	canonical	3	44	junction_2	48.2875501552937	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTTGCATTTTGTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	93234816	93182161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_93183504_93184290_93184444_93215419_93215490_93234220_93234347_93234637
transcript_19786.known	chr15	-	1676	4	FSM	ENSMUSG00000022634.10	ENSMUST00000080299.7	1676	4	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	11.0453610171873	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGCATTTTGTTTACAA	NA	False	NA	-1	True	AATAAA	-20	NA	93234689	93182158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_93183504_93184290_93184444_93234220_93234347_93234637
transcript_19788.nic	chr15	-	931	9	NIC	ENSMUSG00000022635.10	novel	877	8	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	285.365965691426	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCAGTTGTGGAATAGT	NA	False	NA	-14	True	AATAAA	-14	NA	93296218	93283993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93291587_93291646_93293467_93293497_93295050_93295137_93296043
transcript_19790.known	chr15	-	877	8	FSM	ENSMUSG00000022635.10	ENSMUST00000076070.9	877	8	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_1	44.8289265214016	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGGAATAGTGACTGGT	NA	False	NA	-7	True	AATAAA	-21	NA	93296215	93283986	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93289334_93289447_93293467_93293497_93295050_93295137_93296043
transcript_19793.nnic	chr15	-	761	7	NIC	ENSMUSG00000022635.10	novel	877	8	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	43	junction_4	235.838515844116	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGCAGTTGTGGAATAGT	NA	False	NA	-14	True	AATAAA	-14	NA	93296218	93283993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_93284168_93285457_93285534_93285627_93285741_93288931_93289040_93293467_93293497_93295050_93295137_93296043
transcript_19797.known	chr15	+	3573	10	FSM	ENSMUSG00000036167.17	ENSMUST00000049122.16	3573	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	61.5210492934966	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCACTTGGTAGAAACAT	NA	False	NA	NA	False	TATAAA	-33	NA	93296277	93389391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_93296343_93308572_93308665_93318164_93318372_93321894_93321957_93339381_93339594_93349997_93350055_93353331_93353412_93357552_93357673_93362985_93363127_93386854
transcript_1980.known	chr1	+	3849	2	FSM	ENSMUSG00000097814.6	ENSMUST00000181489.3	3849	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAATCATCTCTATTATTT	NA	False	NA	5	True	NA	NA	NA	96799945	96808959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_96800394_96805558
transcript_19800.known	chr15	+	3351	9	FSM	ENSMUSG00000036167.17	ENSMUST00000068457.15	3351	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	61.4527257328754	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAATGTTCACT	NA	False	NA	NA	False	TATAAA	-21	NA	93296280	93389379	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93349997_93350055_93353331_93353412_93357552_93357673_93362985_93363127_93386854
transcript_19803.nnic	chr15	+	1241	8	NIC	ENSMUSG00000036167.17	novel	3573	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	55	junction_3	53.2326430464831	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTTAAAGTATCTTAATTA	NA	False	NA	NA	False	AATAAA	-11	NA	93296230	93387189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_93296343_93308572_93308665_93318164_93318372_93321894_93321957_93339381_93339594_93353331_93353412_93362985_93363127_93386854
transcript_19806.known	chr15	+	1154	8	FSM	ENSMUSG00000036167.17	ENSMUST00000109256.11	1154	8	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_5	28.6199587843226	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTTAAAGTATCTTAATTA	NA	False	NA	NA	False	AATAAA	-11	NA	93296230	93387189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
transcript_19809.nnic	chr15	+	1034	7	NIC	ENSMUSG00000036167.17	novel	1154	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	68	junction_5	39.6722685120083	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCTTAAAGTATCTTAATTA	NA	False	NA	NA	False	AATAAA	-11	NA	93296230	93387189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93362985_93363127_93386854
transcript_19810.nnic	chr15	+	3236	7	NIC	ENSMUSG00000036167.17	novel	3573	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	68	junction_5	39.6722685120083	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCACTTGGTAGAAACAT	NA	False	NA	NA	False	TATAAA	-33	NA	93296230	93389391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_93296343_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93362985_93363127_93386854
transcript_19812.known	chr15	+	3473	8	FSM	ENSMUSG00000036167.17	ENSMUST00000165935.2	3473	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	58.0576771628957	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAATGTTCACT	NA	False	NA	NA	False	TATAAA	-21	NA	93296344	93389379	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_93296586_93308572_93308665_93321894_93321957_93339381_93339594_93353331_93353412_93357552_93357673_93362985_93363127_93386854
transcript_19815.known	chr15	-	2840	9	FSM	ENSMUSG00000033356.4	ENSMUST00000049151.4	2840	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	4.64858849544676	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGAATTGTCTCTATGTTTT	NA	False	NA	-3	True	AATAAA	-27	NA	94441428	94420568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_94421533_94423671_94423726_94425677_94425956_94427336_94427419_94429454_94429554_94431364_94431558_94434394_94434555_94437933_94438856_94441340
transcript_19816.known	chr15	+	2831	12	FSM	ENSMUSG00000059883.17	ENSMUST00000074936.10	2831	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_11	11.4357710498301	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	94441523	94466187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_94441708_94445716_94445885_94449683_94449830_94451715_94451899_94452566_94452728_94454507_94454573_94456130_94456246_94456649_94456760_94459326_94459511_94460898_94460962_94464619_94464779_94464894
transcript_19817.nnic	chr15	+	1564	10	NNC	ENSMUSG00000059883.17	novel	2831	12	NA	NA	-33	5178	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	9.63788819653397	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGCTTTGTCTTGGTTCC	NA	False	NA	NA	False	NA	NA	NA	94441490	94460012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_94441708_94445716_94445885_94449683_94449830_94451715_94451899_94452566_94452728_94454507_94454573_94456130_94456246_94456649_94456760_94459326_94459511_94459797
transcript_19820.known	chr15	-	3025	9	FSM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_8	20.6333316505115	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTTGTGTATGTTGGCTT	NA	False	NA	-12	True	AATAAA	-12	NA	94487760	94475831	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_94477872_94478824_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
transcript_19830.nic	chr15	-	1282	8	ISM	ENSMUSG00000022451.13	ENSMUST00000023087.13	3025	9	-52	2748	-42	321	5prime_fragment	FALSE	canonical	3	499	junction_7	22.0565136845869	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGATTATCACTAGTGCT	NA	False	NA	NA	False	AATAAA	-22	NA	94487812	94478579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_-_94478947_94479097_94479249_94480630_94480757_94482261_94482367_94483328_94483425_94484238_94484418_94486108_94486187_94487632
transcript_19835.known	chr15	+	2717	8	FSM	ENSMUSG00000063296.6	ENSMUST00000080141.6	2717	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_7	14.5195153683108	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTGTGTGATGTAGGTT	NA	False	NA	4	True	AATAAA	-17	NA	94527130	94993979	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_94527184_94535941_94536245_94612742_94612876_94777261_94777362_94829676_94829775_94909196_94909357_94972284_94972415_94992239
transcript_19836.nnic	chr15	-	914	3	NNC	ENSMUSG00000045608.8	novel	477	3	NA	NA	-40	367	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	4.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTTCTCTCCAAGTTTTA	NA	False	NA	-12	True	ATTAAA	-15	NA	95530749	95522251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_95522899_95530158_95530347_95530670
transcript_19838.known	chr15	-	477	3	FSM	ENSMUSG00000045608.8	ENSMUST00000229611.2	477	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	14.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGAAGGGACCTAGAGAC	NA	False	NA	NA	False	NA	NA	NA	95530709	95522618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_95522899_95530158_95530347_95530700
transcript_19840.known	chr15	+	4927	20	FSM	ENSMUSG00000064210.8	ENSMUST00000071874.8	4927	20	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_10	12.2043995518441	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95688723	95872632	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_95688938_95762105_95762189_95792293_95792423_95810185_95810252_95811252_95811538_95811752_95811867_95813833_95813950_95818124_95818260_95825404_95825511_95829663_95829725_95839090_95839234_95841278_95841357_95846152_95846379_95847371_95847542_95847739_95847838_95853771_95853903_95859956_95860163_95863701_95863905_95865503_95865610_95870375
transcript_19841.known	chr15	-	1336	3	FSM	ENSMUSG00000097619.9	ENSMUST00000181122.3	1336	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCACCTGGAAAGTGTTTCT	NA	False	NA	NA	False	AATAAA	-20	NA	96139670	96129750	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_96130756_96138250_96138453_96139541
transcript_19842.known	chr15	+	8507	21	FSM	ENSMUSG00000033237.20	ENSMUST00000096250.5	8507	21	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_13	16.8330032970947	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGGATAAGTGACTTC	NA	False	NA	18	True	AATAAA	-19	NA	96185453	96302873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_96185668_96185774_96185869_96186935_96187034_96247873_96248008_96254573_96254793_96256800_96256869_96259454_96259522_96259613_96259865_96260197_96260295_96260372_96260583_96261475_96261644_96264713_96264796_96266533_96266669_96267236_96267434_96267800_96270644_96276694_96276844_96288756_96288896_96288984_96289071_96290235_96290360_96290453_96290546_96299833
transcript_19843.known	chr15	-	4519	5	FSM	ENSMUSG00000033228.9	ENSMUST00000228072.2	4519	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	104.145331148352	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTGGTGACTGTATAGTA	NA	False	NA	-2	True	NA	NA	NA	96316573	96309579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_96312798_96312912_96313033_96313609_96313829_96314729_96315071_96315952
transcript_19846.known	chr15	-	3183	16	FSM	ENSMUSG00000023169.16	ENSMUST00000100262.4	3183	16	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_15	98.2259074220691	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGGTTTGTTTCCCTC	NA	False	NA	-3	True	ATTAAA	-24	NA	96539843	96473867	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96538934
transcript_19847.known	chr15	-	6966	16	FSM	ENSMUSG00000023169.16	ENSMUST00000088454.13	6966	16	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_15	70.2442089348929	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCGAGTCTCGTATGATT	NA	False	NA	-17	True	ATTAAA	-16	NA	96540131	96469298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540008
transcript_19848.known	chr15	-	7266	16	FSM	ENSMUSG00000023169.16	ENSMUST00000088452.11	7266	16	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_15	89.8033901859439	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCGAGTCTCGTATGATT	NA	False	NA	-17	True	ATTAAA	-16	NA	96540794	96469298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96540371
transcript_19849.nnic	chr15	-	2116	16	NNC	ENSMUSG00000023169.16	novel	6966	16	NA	NA	3715	-258	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_15	116.760076890843	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTTCATAAATAATTTGCC	NA	False	NA	NA	False	NA	NA	NA	96536128	96474125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_96474694_96476410_96476509_96476601_96476744_96477195_96477315_96482224_96482326_96483430_96483511_96484742_96484854_96484972_96485032_96486808_96486892_96487940_96488023_96488300_96488394_96490387_96490462_96507736_96507853_96514022_96514099_96521836_96522051_96536028
transcript_1985.known	chr1	+	2046	8	FSM	ENSMUSG00000026333.15	ENSMUST00000112844.10	2046	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	7.99744857273052	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACGAAACTTTATCTGTGA	NA	False	NA	NA	False	AATAAA	-26	NA	97697896	97720694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_97697981_97703171_97703318_97705050_97705245_97710651_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
transcript_19856.known	chr15	-	4660	16	FSM	ENSMUSG00000022462.8	ENSMUST00000023099.8	4660	16	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_15	32.8196418153655	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCAGTAGGATTTTTTGT	NA	False	NA	-8	True	AATAAA	-16	NA	96597611	96585272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_96588110_96588989_96589088_96589177_96589323_96589559_96589685_96590194_96590296_96590398_96590479_96590897_96591057_96591161_96591221_96591436_96591520_96592893_96592976_96593096_96593190_96593316_96593391_96595802_96595919_96596062_96596145_96596495_96596699_96597288
transcript_19862.known	chr15	-	3932	16	FSM	ENSMUSG00000022464.15	ENSMUST00000023101.10	3932	16	0	0	0	0	multi-exon	FALSE	canonical	3	1416	junction_8	94.9644143877063	152	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGGCTATGATCTTCTTT	NA	False	NA	-12	True	AATAAA	-16	NA	96953837	96892703	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_96894973_96896323_96896422_96897369_96897515_96903700_96903826_96906293_96906395_96906538_96906619_96906743_96907020_96907827_96907887_96907995_96908079_96908164_96908247_96910780_96910874_96911318_96911393_96914008_96914125_96914641_96914733_96917604_96917743_96953735
transcript_19893.nic	chr15	-	828	3	NIC	ENSMUSG00000116295.2	novel	510	4	NA	NA	-35	154	combination_of_known_junctions	FALSE	canonical	3	219	junction_1	28	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAGTATTTAATTGCA	NA	False	NA	NA	False	NA	NA	NA	97065160	97058659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_97059277_97064383_97064492_97065057
transcript_19894.known	chr15	-	655	3	FSM	ENSMUSG00000116295.2	ENSMUST00000231024.2	655	3	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	244.5	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCTGATCATACCATAGC	NA	False	NA	-10	True	AATAAA	-17	NA	97065125	97058813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_97059277_97064383_97064508_97065057
transcript_19895.nic	chr15	-	674	3	NIC	ENSMUSG00000116295.2	novel	655	3	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	219	junction_1	28	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCCTGATCATACCATAGC	NA	False	NA	-10	True	AATAAA	-17	NA	97065160	97058813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_97059277_97064383_97064492_97065057
transcript_19899.known	chr15	-	593	4	FSM	ENSMUSG00000116295.2	ENSMUST00000229245.2	593	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	294.920328224421	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAATAAATATTAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	97065123	97054909	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_97055131_97059094_97059277_97064383_97064508_97065057
transcript_199.known	SIRV7	-	2247	6	FSM	SIRV7A	SIRV702	2247	6	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_3	1351.00954844886	860	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGTGTTAATATGAATCAAC	NA	False	NA	NA	False	TATAAA	-22	NA	114916	1000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV7_-_2676_2993_3112_4095_4180_4725_4811_43028_43078_114680
transcript_1990.known	chr1	+	2494	8	FSM	ENSMUSG00000026333.15	ENSMUST00000027571.13	2494	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	17.1939714162035	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGCATGTCCTTCTTG	NA	False	NA	NA	False	NA	NA	NA	97697921	97721434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_97697981_97703171_97703318_97705050_97705245_97710918_97710958_97712477_97712670_97712779_97712948_97713700_97713984_97720021
transcript_19905.known	chr15	-	2271	17	FSM	ENSMUSG00000022466.7	ENSMUST00000023104.7	2271	17	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_16	35.978292066189	253	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGGGTCGATATTTCATTT	NA	False	NA	-3	True	AATAAA	-25	NA	97603706	97572977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_97573261_97576266_97576368_97576950_97577049_97578215_97578403_97579499_97579721_97581707_97581807_97581913_97581985_97584322_97584445_97585991_97586120_97589062_97589192_97591094_97591166_97591984_97592107_97594378_97594507_97596796_97596920_97598948_97599093_97601082_97601251_97603630
transcript_19910.known	chr15	+	2536	3	FSM	ENSMUSG00000081534.4	ENSMUST00000117892.2	2536	3	0	0	0	0	multi-exon	TRUE	canonical	3	145	junction_2	1	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTTTTTTTTTTTCACT	NA	False	NA	17	True	AATAAA	-18	NA	97682235	97690573	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_97682498_97687783_97687952_97688467
transcript_19915.known	chr15	+	1455	8	FSM	ENSMUSG00000052369.9	ENSMUST00000229428.2	1455	8	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	28.3318527024094	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCACTGTCTCTGACTG	7680	False	NA	10	True	AATAAA	-16	NA	97862109	97868155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_97862217_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
transcript_19916.nic	chr15	+	1402	8	NIC	ENSMUSG00000052369.9	novel	1623	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	55.5683069266455	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCACTGTCTCTGACTGC	7678	False	NA	11	True	AATAAA	-17	NA	97862107	97868156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_97862161_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
transcript_19917.known	chr15	+	1623	8	FSM	ENSMUSG00000052369.9	ENSMUST00000064200.9	1623	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	38.9117263685331	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCACTGTCTCTGACTGC	7681	False	NA	11	True	AATAAA	-17	NA	97862110	97868156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_97862385_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
transcript_19918.nic	chr15	+	1441	8	NIC	ENSMUSG00000052369.9	novel	1623	8	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	50.2548606644985	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCACTGTCTCTGACTGC	7684	False	NA	11	True	AATAAA	-17	NA	97862113	97868156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_97862206_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97865957_97866008_97866489_97866544_97867467
transcript_19919.nnic	chr15	+	1420	7	NIC	ENSMUSG00000052369.9	novel	1455	8	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_5	61.4050757945411	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCACTGTCTCTGACTGC	7666	False	NA	11	True	AATAAA	-17	NA	97862095	97868156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_97862217_97862720_97862912_97864127_97864192_97864817_97864978_97865067_97865209_97866489_97866544_97867467
transcript_19922.nic	chr15	-	1318	3	ISM	ENSMUSG00000022483.18	ENSMUST00000088355.12	4862	53	26986	0	11250	0	3prime_fragment	FALSE	canonical	3	15	junction_2	1	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGACTTGTGTTTTGT	9383	False	NA	NA	False	ATTAAA	-31	NA	97875552	97873482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_-_97874068_97874522_97874766_97875062
transcript_19925.known	chr15	+	2879	23	FSM	ENSMUSG00000033065.15	ENSMUST00000051226.8	2879	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	24.5577830991277	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGTGTTTTGGGCGCTCTT	1596	False	NA	1	True	AATAAA	-13	NA	98006346	98030322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_98006493_98010034_98010128_98016062_98016137_98017273_98017352_98018671_98018862_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
transcript_19927.nnic	chr15	+	2347	19	NNC	ENSMUSG00000033065.15	novel	2816	23	NA	NA	12561	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	22.6396898290492	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGGCGCTCTTGTTATT	NA	False	NA	7	True	AATAAA	-19	NA	98018907	98030328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_98018951_98019077_98019244_98020099_98020145_98020510_98020620_98020732_98020829_98021026_98021120_98021676_98021803_98022906_98022972_98023430_98023495_98024184_98024335_98024733_98024805_98025318_98025407_98025487_98025641_98026059_98026225_98027146_98027209_98027602_98027715_98029299_98029400_98029482_98029589_98029795
transcript_19928.known	chr15	-	3806	19	FSM	ENSMUSG00000033075.18	ENSMUST00000180657.2	3806	19	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_18	49.2407790452959	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGTTGTTGTTTGTAGC	6461	False	NA	NA	False	TTTAAA	-5	NA	97991132	97939613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97959830_97959909_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97990528
transcript_1993.known	chr1	+	517	2	FSM	ENSMUSG00000026333.15	ENSMUST00000122925.2	517	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCACAATCCTGTGTTTA	NA	False	NA	NA	False	ATTAAA	-29	NA	97697925	97698730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_97697981_97698268
transcript_19931.known	chr15	-	6575	18	FSM	ENSMUSG00000033075.18	ENSMUST00000044189.16	6575	18	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_17	35.6797559226372	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCCCTGGACTCAATACTAT	5968	False	NA	2	True	AATAAA	-36	NA	97991625	97936624	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_97940834_97943183_97943280_97943739_97943825_97945073_97945154_97946066_97946271_97954709_97954842_97956076_97956233_97956784_97956870_97957796_97957836_97962699_97962755_97964284_97964557_97964638_97964743_97973689_97973862_97974430_97974591_97980123_97980209_97982850_97982982_97984966_97985015_97991163
transcript_19933.known	chr15	-	853	2	FSM	ENSMUSG00000033075.18	ENSMUST00000182611.2	853	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTGATTAAGAAGAGATCA	6825	False	NA	NA	False	NA	NA	NA	97990768	97987071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_97987685_97990528
transcript_19934.known	chr15	-	1049	4	FSM	ENSMUSG00000048175.14	ENSMUST00000059112.12	1049	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	39.6848697728604	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGCTGTGTGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	98043540	98033594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_98034320_98039164_98039270_98040531_98040692_98043481
transcript_19935.known	chr15	-	1100	4	FSM	ENSMUSG00000048175.14	ENSMUST00000123626.8	1100	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_3	16.7531091641721	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGCTGTGTGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	98043587	98033594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_98034320_98039164_98039270_98040531_98040696_98043481
transcript_19937.nnic	chr15	-	2169	11	NNC	ENSMUSG00000022992.18	novel	2324	10	NA	NA	-49	0	at_least_one_novel_splicesite	FALSE	canonical	1	34	junction_3	443.934499673094	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGTGTAAAGTGATCTG	NA	False	NA	-21	True	ATTAAA	-14	NA	98432194	98416700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_98417429_98418198_98418307_98419516_98419644_98422441_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98432121
transcript_19938.known	chr15	-	3596	10	FSM	ENSMUSG00000022992.18	ENSMUST00000230542.2	3596	10	0	0	0	0	multi-exon	FALSE	canonical	1	385	junction_5	229.121025758101	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGGACGGAATCATGTT	NA	False	NA	NA	False	NA	NA	NA	98432145	98415538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98431782
transcript_19939.nic	chr15	-	2144	10	NIC	ENSMUSG00000022992.18	novel	3596	10	NA	NA	-49	0	combination_of_known_junctions	FALSE	canonical	1	77	junction_9	343.824388135198	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGTGTAAAGTGATCTG	NA	False	NA	-21	True	ATTAAA	-14	NA	98432194	98416700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_98417429_98418198_98418307_98422339_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98432121
transcript_1994.known	chr1	+	2858	2	FSM	ENSMUSG00000067017.6	ENSMUST00000086725.6	2858	2	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTATCCATGCCACACTG	NA	False	NA	NA	False	AATAAA	-29	NA	105383695	105386554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_105384509_105384509
transcript_19940.nic	chr15	-	2042	10	NIC	ENSMUSG00000022992.18	novel	2324	10	NA	NA	-49	0	combination_of_known_junctions	FALSE	canonical	1	77	junction_9	387.907205398405	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAAGTGTAAAGTGATCTG	NA	False	NA	-21	True	ATTAAA	-14	NA	98432194	98416700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_98417429_98418198_98418307_98422441_98422594_98424455_98424553_98426743_98426911_98427170_98427335_98429203_98429319_98429600_98429780_98431398_98431658_98432121
transcript_19943.known	chr15	-	2175	9	FSM	ENSMUSG00000011960.13	ENSMUST00000012104.7	2175	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	11.1439445440113	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	98465517	98441091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_98442490_98444404_98444476_98444625_98444790_98446546_98446593_98449794_98449858_98452481_98452543_98458077_98458207_98462927_98463010_98465356
transcript_19946.nnic	chr15	-	752	4	NNC	ENSMUSG00000011960.13	novel	2015	3	NA	NA	-56	-1215	intron_retention	FALSE	canonical	3	4	junction_1	18.8738502225228	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCTGGCTGTTTTTCCAG	NA	False	NA	NA	False	ATTAAA	-16	NA	98465617	98457693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_98457974_98458077_98458207_98462927_98463010_98465356
transcript_19948.known	chr15	+	2513	13	FSM	ENSMUSG00000003352.15	ENSMUST00000109150.9	2513	13	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	9.06879570591132	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTGTCTCTGGTCTG	NA	False	NA	5	True	AATAAA	-16	NA	98530256	98542410	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_98530402_98537368_98537492_98537694_98537818_98538219_98538336_98538566_98538632_98538839_98538860_98539057_98539139_98539280_98539340_98539496_98539607_98539819_98539972_98540189_98540286_98540382_98540533_98541137
transcript_19950.known	chr15	-	3187	17	FSM	ENSMUSG00000003360.16	ENSMUST00000003450.15	3187	17	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	5.44252641243017	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCAGCCCCGAGCTCC	6999	False	NA	-14	True	AATAAA	-15	NA	98560770	98543014	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_98543899_98544224_98544400_98545043_98545153_98545354_98545507_98546367_98546611_98547595_98547774_98548024_98548171_98548473_98548700_98548793_98548938_98549124_98549238_98549345_98549480_98549798_98549938_98550353_98550420_98550768_98550863_98554482_98554594_98556110_98556317_98560703
transcript_19951.known	chr15	-	889	1	FSM	ENSMUSG00000003360.16	ENSMUST00000228973.2	889	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAATTAAAAAAAAAAAACAA	6994	False	NA	NA	False	NA	NA	NA	98560775	98559886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_98559900_98560800
transcript_19952.known	chr15	-	2203	5	FSM	ENSMUSG00000054855.14	ENSMUST00000003451.11	2203	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	4.54835134966506	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGGAGCAGCGCTCTCAA	NA	False	NA	NA	False	NA	NA	NA	98575342	98567085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_98568724_98570391_98570527_98571726_98571837_98574367_98574456_98575110
transcript_19954.known	chr15	-	734	6	FSM	ENSMUSG00000003355.8	ENSMUST00000003445.8	734	6	0	0	0	0	multi-exon	FALSE	canonical	3	632	junction_4	33.5177564881661	339	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTTGTATTTTTCACT	NA	False	NA	NA	False	AATAAA	-15	NA	98626079	98622250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_98622484_98624364_98624436_98624780_98624815_98625091_98625180_98625563_98625630_98625837
transcript_19957.nnic	chr15	-	634	5	NNC	ENSMUSG00000003355.8	novel	734	6	NA	NA	519	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	286.193116618831	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTATTTTTCACTCGGT	NA	False	NA	NA	False	AATAAA	-19	NA	98625502	98622246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_98622484_98624364_98624436_98624780_98624815_98625091_98625180_98625298
transcript_19962.known	chr15	-	4566	5	FSM	ENSMUSG00000051853.11	ENSMUST00000053183.12	4566	5	0	0	0	0	multi-exon	FALSE	canonical	3	612	junction_3	18.4712614620659	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGGTTTCCTTTTCCTCCA	1799	False	NA	NA	False	NA	NA	NA	98661092	98634514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_98638376_98638871_98638997_98639204_98639316_98640473_98640711_98660860
transcript_19963.nic	chr15	-	2063	12	NIC	ENSMUSG00000067713.8	novel	1652	12	NA	NA	65	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_11	100.554249163292	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTTGATTTCTGC	9481	False	NA	-4	True	ATTAAA	-22	NA	98729270	98710677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98728767
transcript_19965.known	chr15	-	1652	12	FSM	ENSMUSG00000067713.8	ENSMUST00000168846.3	1652	12	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_11	39.9075377622816	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTTGATTTCTGC	9349	False	NA	-4	True	ATTAAA	-22	NA	98729402	98710677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_98711362_98711477_98711625_98711886_98711925_98712068_98712235_98712389_98712517_98713063_98713119_98713194_98713241_98713377_98713437_98713539_98713622_98713756_98713867_98723568_98723615_98729310
transcript_19973.known	chr15	-	1069	8	FSM	ENSMUSG00000023755.11	ENSMUST00000229348.2	1069	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	69.0784824290016	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	-22	True	AATAAA	-20	NA	98779157	98775658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777645_98777726_98778388_98778461_98779030
transcript_19974.known	chr15	-	1038	8	FSM	ENSMUSG00000023755.11	ENSMUST00000147015.2	1038	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_7	64.8753907620649	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGGTAGCCTGGATGTT	NA	False	NA	NA	False	NA	NA	NA	98778971	98775926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98778595
transcript_19975.known	chr15	-	1261	8	FSM	ENSMUSG00000023755.11	ENSMUST00000024518.11	1261	8	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_2	21.3388598283861	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	-22	True	AATAAA	-20	NA	98779361	98775658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_98776179_98776333_98776416_98776888_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
transcript_19979.nnic	chr15	-	1110	7	NIC	ENSMUSG00000023755.11	novel	1261	8	NA	NA	-43	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_2	74.1117774416155	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	-22	True	AATAAA	-20	NA	98779258	98775658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_98776179_98776333_98776416_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
transcript_19980.nic	chr15	-	1622	7	ISM	ENSMUSG00000023755.11	ENSMUST00000229352.2	1604	8	12540	0	-34	0	3prime_fragment	FALSE	canonical	3	176	junction_2	18.3212081115484	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGTGTCTGGAGAGAGC	NA	False	NA	-22	True	AATAAA	-20	NA	98779249	98775658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_-_98776179_98776333_98776937_98777139_98777197_98777285_98777369_98777657_98777726_98778388_98778461_98779030
transcript_19985.known	chr15	-	2304	17	FSM	ENSMUSG00000022999.16	ENSMUST00000023736.10	2304	17	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_9	10.4395581803063	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCTTGTCCCTGTGTCTAT	NA	False	NA	-3	True	AATAAA	-35	NA	98816112	98801797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_98802390_98802545_98802708_98803796_98803864_98804124_98804216_98805417_98805492_98805774_98805853_98806400_98806478_98806556_98806641_98806729_98806803_98807083_98807149_98807268_98807338_98809376_98809504_98810024_98810129_98810278_98810419_98811437_98811472_98813017_98813103_98815730
transcript_19996.known	chr15	-	1803	4	FSM	ENSMUSG00000072235.7	ENSMUST00000097014.7	1803	4	0	0	0	0	multi-exon	FALSE	canonical	3	1268	junction_3	1593.04014038846	2288	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTGTGTTCTATATT	NA	False	NA	-4	True	AATAAA	-19	NA	98851584	98847717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_98848896_98849068_98849218_98849349_98849573_98851331
transcript_2.known	ERCC-00003	+	1007	1	FSM	ERCC-00003A	DQ516784	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AAAAAG	-30	NA	0	1007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00003_+_0_1000
transcript_20.known	ERCC-00058	+	1120	1	FSM	ERCC-00058A	DQ459418	1120	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00058_+_0_1100
transcript_200.known	SIRV7	-	428	3	FSM	SIRV7A	SIRV704	428	3	0	0	0	0	multi-exon	FALSE	canonical	3	4944	junction_1	1233	747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTTCGTATTTGCTGCT	NA	False	NA	NA	False	ATTAAA	-33	NA	114738	55849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV7_-_56098_78841_78964_114680
transcript_20000.known	chr15	+	1345	2	FSM	ENSMUSG00000116223.2	ENSMUST00000229156.2	1345	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCATTGTTTGAGAGATA	1346	False	NA	NA	False	AATAAA	-18	NA	98832205	98838434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_98832301_98837184
transcript_20003.known	chr15	-	1743	4	FSM	ENSMUSG00000023004.9	ENSMUST00000077577.8	1743	4	0	0	0	0	multi-exon	FALSE	canonical	3	3388	junction_1	4057.60923040485	11521	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTCTGGATACTTTGT	31	False	NA	NA	False	AGTAAA	-18	NA	98832446	98829305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_98830444_98830572_98830722_98830853_98831077_98832213
transcript_20005.known	chr15	+	1982	4	FSM	ENSMUSG00000043091.10	ENSMUST00000058914.10	1982	4	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_1	4660.1984459415	1415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGGCATCTGGTTCATA	NA	False	NA	15	True	AATAAA	-22	NA	98927771	98935991	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_98928306_98931974_98932198_98932329_98932479_98934915
transcript_20006.known	chr15	+	781	3	FSM	ENSMUSG00000043091.10	ENSMUST00000230447.2	781	3	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_1	2383.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACAAAAAGTTTCAGAGC	NA	False	NA	NA	False	NA	NA	NA	98928201	98932783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_98928306_98931974_98932198_98932329
transcript_2001.known	chr1	-	3015	26	FSM	ENSMUSG00000056536.15	ENSMUST00000190811.7	3015	26	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	16.302932251592	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGTATAACTTGTTGCT	NA	False	NA	NA	False	AATAAA	-15	NA	105591387	105484530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_105484791_105485187_105485275_105485712_105485816_105493872_105493976_105507646_105507756_105512713_105512823_105515704_105515797_105516773_105516867_105516950_105517051_105519346_105519487_105525392_105525576_105526773_105526853_105565234_105565291_105565907_105566001_105568389_105568450_105572203_105572245_105574422_105574540_105575833_105575965_105577007_105577133_105580828_105580936_105583658_105583758_105584390_105584513_105585326_105585576_105586611_105586732_105587017_105587092_105591224
transcript_20011.known	chr15	+	2639	14	FSM	ENSMUSG00000032783.10	ENSMUST00000230054.2	2639	14	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	17.6655315775427	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGCAGCCAGTGCTGTTG	NA	False	NA	14	True	AATAAA	-23	NA	98972455	98981290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_98972949_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980587_98980789_98980984_98981108
transcript_20012.known	chr15	+	2255	14	FSM	ENSMUSG00000032783.10	ENSMUST00000039665.8	2255	14	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	8.88852727732572	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAATGGGGCAGCCAGTG	NA	False	NA	8	True	AATAAA	-17	NA	98972858	98981284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_98972974_98973230_98973380_98973488_98973679_98975168_98975327_98975409_98975548_98975712_98975793_98976127_98976205_98976664_98976784_98978746_98978831_98979071_98979132_98979715_98979851_98980006_98980587_98980789_98980984_98981108
transcript_20018.nnic	chr15	+	1568	3	NNC	ENSMUSG00000038009.8	novel	1564	3	NA	NA	-120	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	18.5	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCACGGAATCCTAGCCCA	3903	False	NA	3	True	AATAAA	-21	NA	98997172	99002618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_98997366_98998703_98999657_99002196
transcript_20019.known	chr15	+	1564	3	FSM	ENSMUSG00000038009.8	ENSMUST00000061295.7	1564	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	3.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCACGGAATCCTAGCCCA	4023	False	NA	3	True	AATAAA	-21	NA	98997292	99002618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_98997482_98998703_98999657_99002196
transcript_2002.known	chr1	-	1362	10	FSM	ENSMUSG00000056536.15	ENSMUST00000191408.7	1362	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	24.4969133858145	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTACTTTTTCAGTCAGT	NA	False	NA	NA	False	AATAAA	-16	NA	105591402	105574353	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_105574540_105575833_105575965_105577007_105577133_105580828_105580936_105583658_105583758_105584390_105584513_105585326_105585576_105586640_105586732_105587017_105587092_105591224
transcript_20021.nnic	chr15	+	1583	3	NNC	ENSMUSG00000038009.8	novel	1564	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	27	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCACGGAATCCTAGCCCA	4023	False	NA	3	True	AATAAA	-21	NA	98997292	99002618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_98997501_98998703_98999657_99002196
transcript_20022.known	chr15	+	3096	13	FSM	ENSMUSG00000051934.6	ENSMUST00000063517.6	3096	13	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	25.9147909289056	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTAGCGCCGTCTCTCT	NA	False	NA	18	True	AATAAA	-23	NA	99024436	99111096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_99024769_99047514_99047812_99064960_99065041_99071282_99071392_99072282_99072333_99076187_99076447_99078461_99078642_99083839_99083976_99097088_99097148_99103478_99103589_99106713_99106817_99108762_99108978_99109930
transcript_20025.nic	chr15	-	2014	15	NIC	ENSMUSG00000037570.17	novel	1916	15	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_14	227.949611779016	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTTTTATTTTTTTTT	NA	False	NA	0	True	AATAAA	-20	NA	99149801	99140698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149602
transcript_20026.known	chr15	-	1916	15	FSM	ENSMUSG00000037570.17	ENSMUST00000041190.17	1916	15	0	0	0	0	multi-exon	FALSE	canonical	3	647	junction_2	85.1129201923742	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTTTTATTTTTTTTTA	NA	False	NA	1	True	AATAAA	-21	NA	99149842	99140697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149742
transcript_20027.nnic	chr15	-	1892	15	NNC	ENSMUSG00000037570.17	novel	1916	15	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	228.257205890233	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTTTTATTTTTTTTT	NA	False	NA	0	True	AATAAA	-20	NA	99149852	99140698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146364_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99148343_99148464_99149742
transcript_20029.known	chr15	-	1771	14	FSM	ENSMUSG00000037570.17	ENSMUST00000163506.3	1771	14	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_13	210.299476515005	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAAAGTAGCTTCTTTTAT	NA	False	NA	-8	True	AATAAA	-12	NA	99149826	99140706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_99141102_99141198_99141327_99141560_99141649_99141805_99141889_99142025_99142119_99142228_99142258_99142528_99142605_99144807_99144947_99145159_99145269_99146331_99146442_99146582_99146742_99147248_99147388_99147756_99147896_99149742
transcript_20039.known	chr15	+	871	11	FSM	ENSMUSG00000023010.16	ENSMUST00000160635.8	871	11	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	734.518481727996	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCACCCCCCCACCCCTGT	NA	False	NA	-67	True	NA	NA	NA	99290866	99306417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_99290922_99291575_99291612_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
transcript_2004.nnic	chr1	+	746	3	NNC	ENSMUSG00000026319.14	novel	874	2	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	25	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGTCTGCTTCATAGA	NA	False	NA	11	True	AATAAA	-13	NA	105591606	105592875	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_105591709_105591891_105592359_105592698
transcript_20042.known	chr15	+	1148	11	FSM	ENSMUSG00000023010.16	ENSMUST00000161250.8	1148	11	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	709.276455269735	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTGAAATTTTTTGATC	NA	False	NA	-27	True	AATGAA	-37	NA	99290866	99306515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_99290922_99297537_99297753_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
transcript_20048.known	chr15	+	2452	10	FSM	ENSMUSG00000023010.16	ENSMUST00000023749.15	2452	10	0	0	0	0	multi-exon	FALSE	canonical	3	1506	junction_9	135.383406171756	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTGTCTCAGTGTTAAAT	NA	False	NA	15	True	AATAAA	-20	NA	99290762	99307930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_99290922_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
transcript_2005.known	chr1	+	874	2	FSM	ENSMUSG00000026319.14	ENSMUST00000191150.2	874	2	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGTCTGCTTCATAGA	NA	False	NA	11	True	AATAAA	-13	NA	105591661	105592875	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_105592359_105592698
transcript_20052.known	chr15	+	944	10	FSM	ENSMUSG00000023010.16	ENSMUST00000159209.8	944	10	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	555.512064964378	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCACCCCCCCACCCCTG	NA	False	NA	-68	True	NA	NA	NA	99291099	99306416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_99291265_99299460_99299545_99299941_99300051_99302294_99302416_99303597_99303647_99303741_99303840_99304032_99304113_99304457_99304559_99305148_99305225_99306355
transcript_20057.known	chr15	-	1276	2	FSM	ENSMUSG00000037525.6	ENSMUST00000040313.6	1276	2	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	0	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTGTGTCGTTTCTTTGCT	NA	False	NA	0	True	ATTAAA	-19	NA	99372611	99367959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_99368961_99372336
transcript_2006.known	chr1	-	471	3	FSM	ENSMUSG00000099843.2	ENSMUST00000185535.2	471	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCTGATTTTAAAACAGCC	NA	False	NA	NA	False	NA	NA	NA	105918012	105907079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_105907355_105916748_105916834_105917901
transcript_20060.known	chr15	-	3052	18	FSM	ENSMUSG00000023015.15	ENSMUST00000171702.8	3052	18	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_16	174.822975218819	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGTTGGTTTTCTTGTC	NA	False	NA	0	True	AATAAA	-20	NA	99549524	99518376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99541273_99541405_99549387
transcript_20066.nic	chr15	-	2935	17	NIC	ENSMUSG00000023015.15	novel	3052	18	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_15	170.527387371501	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGATGTTGGTTTTCTTGTC	NA	False	NA	0	True	AATAAA	-20	NA	99549552	99518376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537687_99540763_99540853_99549387
transcript_20067.known	chr15	-	2933	17	FSM	ENSMUSG00000023015.15	ENSMUST00000023756.12	2933	17	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_16	66.1194172974173	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGATGTTGGTTTTCTTGT	NA	False	NA	-1	True	AATAAA	-19	NA	99549537	99518377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_99519346_99520099_99520206_99521449_99521574_99521807_99521941_99522118_99522225_99524063_99524263_99524342_99524439_99526514_99526680_99528989_99529121_99529960_99530079_99530595_99530677_99532122_99532177_99534012_99534083_99535518_99535656_99537494_99537701_99540763_99540853_99549387
transcript_2007.known	chr1	-	1027	1	FSM	ENSMUSG00000099843.2	ENSMUST00000188519.2	1027	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCAAAGTAGGAGCGTG	NA	False	NA	NA	False	AATAAA	-14	NA	105917982	105916955	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_105917000_105918000
transcript_20075.known	chr15	+	3307	13	FSM	ENSMUSG00000023018.6	ENSMUST00000023759.6	3307	13	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_12	25.0281785638153	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCCTGCTGTCTGGAGGG	7541	False	NA	26	True	AATAAA	-17	NA	99600009	99611872	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_99600380_99600986_99601175_99601471_99601515_99601618_99601742_99602211_99602335_99603507_99603625_99605191_99605294_99605520_99605683_99605765_99605864_99607161_99607298_99608973_99609097_99610039_99610142_99610252
transcript_20078.known	chr15	+	2090	2	FSM	ENSMUSG00000023020.4	ENSMUST00000023761.4	2090	2	0	0	0	0	multi-exon	FALSE	canonical	3	1440	junction_1	0	485	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTGATGTATGAGTCT	NA	False	NA	NA	False	AATAAA	-24	NA	99623527	99627413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_99623730_99625525
transcript_20079.known	chr15	-	2775	11	FSM	ENSMUSG00000023021.16	ENSMUST00000109035.11	2775	11	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	103.150569557322	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCTTAGTTAATGGTGT	NA	False	NA	NA	False	NA	NA	NA	99670343	99632761	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_99634318_99635427_99635535_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
transcript_2008.known	chr1	-	5518	10	FSM	ENSMUSG00000009905.6	ENSMUST00000010049.6	5518	10	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_2	12.4017123469222	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTGAATTGCAAGCCAAAC	8261	False	NA	15	True	TATAAA	-33	NA	106687457	106648188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_106652752_106655358_106655461_106662276_106662361_106667060_106667145_106671398_106671591_106675217_106675314_106675500_106675567_106680941_106680999_106683173_106683264_106687273
transcript_20083.known	chr15	-	4243	11	FSM	ENSMUSG00000023022.15	ENSMUST00000073691.5	4243	11	0	0	0	0	multi-exon	FALSE	canonical	3	692	junction_4	128.449367456597	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCAGTGTCCACACTGCT	7238	False	NA	-3	True	AATAAA	-15	NA	99773337	99676350	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_99679172_99681400_99681535_99692289_99692400_99694622_99694681_99699991_99700094_99704303_99704453_99705539_99705625_99717374_99717840_99724672_99724719_99741555_99741705_99773213
transcript_20086.nic	chr15	-	2034	10	NIC	ENSMUSG00000023021.16	novel	2096	10	NA	NA	-29	0	intron_retention	FALSE	canonical	3	38	junction_2	75.4335616434901	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTCTTTAGTA	NA	False	NA	-3	True	ATTAAA	-15	NA	99670511	99633472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_99634318_99636545_99636612_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
transcript_20089.known	chr15	-	2096	10	FSM	ENSMUSG00000023021.16	ENSMUST00000023762.13	2096	10	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_2	16.8332416572494	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGTCTCTTTAGTA	NA	False	NA	-3	True	ATTAAA	-15	NA	99670482	99633472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_99634318_99636545_99636703_99637286_99637394_99637482_99637612_99638824_99638918_99639489_99639541_99643769_99643828_99644917_99645049_99649116_99649223_99670063
transcript_20099.known	chr15	-	2680	2	FSM	ENSMUSG00000023022.15	ENSMUST00000171450.2	2680	2	0	0	0	0	multi-exon	FALSE	canonical	3	1109	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAACAAAAAAAAAA	7278	False	NA	NA	False	NA	NA	NA	99773297	99739108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_99741705_99773213
transcript_201.known	SIRV8001	+	8001	1	FSM	SIRV8001A	SIRV8001	8001	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	8001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV8001_+_0_8000
transcript_20100.known	chr15	-	294	1	FSM	ENSMUSG00000092014.2	ENSMUST00000170206.2	294	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATTTCAATCAGTCATAAA	NA	False	NA	NA	False	NA	NA	NA	99708463	99708169	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_99708200_99708500
transcript_20101.known	chr15	+	6530	16	FSM	ENSMUSG00000023025.17	ENSMUST00000100206.4	6530	16	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_1	85.9835643209406	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGGTTTCTTTTTTCCA	NA	False	NA	NA	False	AATAAA	-15	NA	99870660	99914239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_99870865_99882800_99882937_99883918_99884075_99885283_99885360_99888173_99888311_99889605_99889710_99891203_99891315_99892544_99892599_99894347_99894558_99895253_99895358_99898716_99898930_99899682_99899732_99903121_99903284_99905487_99905610_99908172_99908342_99909716
transcript_20109.nnic	chr15	+	1492	8	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	-12	278	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	110.684143362257	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCGTTACTAAGTATGT	NA	False	NA	11	True	AATAAA	-19	NA	100125687	100158282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695_100158179_100158220
transcript_20110.nnic	chr15	+	2339	8	NNC	ENSMUSG00000023027.14	novel	2365	7	NA	NA	-12	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	110.684143362257	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTCGGAATGCAAAACAT	NA	False	NA	17	True	ATTAAA	-20	NA	100125687	100159129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695_100158179_100158220
transcript_20113.known	chr15	+	2365	7	FSM	ENSMUSG00000023027.14	ENSMUST00000023769.11	2365	7	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_1	32.1334024895521	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGTTTTCGGAATGCAAA	NA	False	NA	13	True	ATTAAA	-16	NA	100125699	100159125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_100125964_100130613_100130713_100143125_100143227_100149949_100150081_100151974_100152155_100152234_100152395_100157695
transcript_20121.known	chr15	+	1946	2	FSM	ENSMUSG00000054619.8	ENSMUST00000067752.5	1946	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTGCATTTGTGTC	538	False	NA	12	True	AATAAA	-28	NA	100202641	100212236	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_100203226_100210874
transcript_20122.nnic	chr15	-	2918	18	NNC	ENSMUSG00000023030.17	novel	3025	17	NA	NA	-18	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	53.8380244062904	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGTCTAGGGGTGCGA	NA	False	NA	NA	False	AATAAA	-22	NA	100320954	100285778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_100286319_100286443_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
transcript_20123.nnic	chr15	-	2896	18	NNC	ENSMUSG00000023030.17	novel	3025	17	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	53.8380244062904	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGTCTAGGGGTGCGA	NA	False	NA	NA	False	AATAAA	-22	NA	100320954	100285778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_100286361_100286507_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
transcript_20125.known	chr15	-	3025	17	FSM	ENSMUSG00000023030.17	ENSMUST00000023774.12	3025	17	0	0	0	0	multi-exon	FALSE	canonical	1	67	junction_1	39.2515923243886	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGTCTAGGGGTGCGA	NA	False	NA	NA	False	AATAAA	-22	NA	100320936	100285778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_100287043_100293150_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
transcript_20126.known	chr15	-	4415	16	FSM	ENSMUSG00000023030.17	ENSMUST00000138843.8	4415	16	0	0	0	0	multi-exon	FALSE	canonical	1	68	junction_8	31.7016648704063	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGGACACACTTTAAGT	NA	False	NA	80	True	AATAAA	-19	NA	100320883	100290443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_100293205_100295544_100295699_100297294_100297369_100299148_100299299_100299432_100299553_100300178_100300266_100301061_100301221_100301688_100301845_100303456_100303525_100303624_100303696_100304160_100304268_100305981_100306102_100307080_100307207_100307963_100308113_100310071_100310144_100320842
transcript_20130.known	chr15	+	1222	9	FSM	ENSMUSG00000037353.10	ENSMUST00000229648.2	1222	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	16.3587705833904	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTTTTATTGTGATGTA	2419	False	NA	NA	False	NA	NA	NA	100366987	100375956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_100367020_100367565_100367718_100369540_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
transcript_20132.known	chr15	+	2502	9	FSM	ENSMUSG00000037353.10	ENSMUST00000037001.10	2502	9	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	24.1761116600664	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGGGAATTACTTATG	2335	False	NA	27	True	AGTAAA	-16	NA	100366903	100377045	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_100367127_100367565_100367718_100369540_100369657_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
transcript_20134.known	chr15	+	2266	8	FSM	ENSMUSG00000037353.10	ENSMUST00000230294.2	2266	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	31.1808418417333	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTTCTGGGAATTACTTAT	2347	False	NA	26	True	AGTAAA	-15	NA	100366915	100377044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_100367020_100367565_100367718_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
transcript_20137.nnic	chr15	+	2248	7	NNC	ENSMUSG00000037353.10	novel	2153	6	NA	NA	-560	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	42.1689722689826	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGGGAATTACTTATG	5159	False	NA	27	True	AGTAAA	-16	NA	100369727	100377045	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_100369965_100370429_100370513_100372903_100373091_100373186_100373289_100373382_100373536_100374670_100374768_100375656
transcript_20138.known	chr15	-	3654	2	FSM	ENSMUSG00000009739.18	ENSMUST00000177335.2	3654	2	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTCTCTGCCTATTTTG	8506	False	NA	-3	True	AATAAA	-18	NA	100478112	100473201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_100476500_100477756
transcript_2014.known	chr1	-	4633	11	FSM	ENSMUSG00000009907.18	ENSMUST00000094646.6	4633	11	0	0	0	0	multi-exon	TRUE	canonical	3	455	junction_4	35.0793386482699	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTATGTTTTTCGTG	24	False	NA	NA	False	ATTAAA	-5	NA	106724458	106697159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_106700279_106701736_106701878_106704999_106705220_106706698_106706781_106707691_106707841_106708233_106708391_106710395_106710516_106714432_106714501_106717658_106717816_106719407_106719520_106724150
transcript_20141.known	chr15	+	2135	4	FSM	ENSMUSG00000000346.10	ENSMUST00000000356.10	2135	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	569.007518013212	583	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCAGCATTCTTTACTTAG	NA	False	NA	18	True	AATAAA	-25	NA	100513229	100518642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_100513606_100514793_100514913_100515805_100516052_100517248
transcript_20146.known	chr15	-	1135	4	FSM	ENSMUSG00000053559.14	ENSMUST00000066068.7	1135	4	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_3	209.183067086119	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCCTTGTTCTGCTTAA	NA	False	NA	16	True	ATTAAA	-37	NA	100534736	100519219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_100519908_100520509_100520591_100534067_100534137_100534439
transcript_20147.known	chr15	-	920	4	FSM	ENSMUSG00000053559.14	ENSMUST00000172334.9	920	4	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_3	158.779371736032	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCTTTGTTTGATCTGA	NA	False	NA	-94	True	NA	NA	NA	100534821	100519329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_100519908_100520509_100520591_100534067_100534137_100534629
transcript_20148.known	chr15	-	527	3	FSM	ENSMUSG00000053559.14	ENSMUST00000229307.2	527	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	362	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGCCCCCAATACCGGA	NA	False	NA	NA	False	NA	NA	NA	100533381	100519599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_100519908_100520509_100520591_100533243
transcript_20150.nnic	chr15	-	2004	12	NNC	ENSMUSG00000098112.9	novel	2036	11	NA	NA	-15	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	44.499419626636	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAGGTGTCTTGCCCTGAA	NA	False	NA	-5	True	AATAAA	-17	NA	100567449	100538963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_100539184_100539224_100539446_100542693_100543421_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
transcript_20151.known	chr15	-	2036	11	FSM	ENSMUSG00000098112.9	ENSMUST00000183211.8	2036	11	0	0	0	0	multi-exon	TRUE	canonical	2	83	junction_1	21.2593508837876	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTGCCCTGAACAGCCA	NA	False	NA	1	True	AATAAA	-23	NA	100567434	100538957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_100539446_100542693_100543421_100546960_100547044_100548080_100548157_100549839_100549926_100550265_100550374_100554075_100554172_100554590_100554686_100554940_100554996_100560397_100560479_100567293
transcript_20153.nnic	chr15	-	1091	7	NNC	ENSMUSG00000023031.9	novel	1108	8	NA	NA	-48	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	12.4018367815238	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGTGCTTGCATTTA	8394	False	NA	-2	True	AATAAA	-16	NA	100583293	100572305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_100572599_100573204_100573355_100579023_100579170_100580767_100580905_100582460_100582587_100583014_100583242_100583281
transcript_20155.nnic	chr15	-	868	5	NNC	ENSMUSG00000023031.9	novel	762	4	NA	NA	-108	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	15.5463018110418	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGTGTGCTTGCATTTA	5846	False	NA	-2	True	AATAAA	-16	NA	100581108	100572305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_100572599_100573204_100573355_100579023_100579170_100579674_100579780_100580934
transcript_20157.known	chr15	-	456	4	FSM	ENSMUSG00000023031.9	ENSMUST00000229235.2	456	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	10.8730042868667	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAGCTGAGGTTATCGCT	5954	False	NA	NA	False	NA	NA	NA	100581000	100572504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_100572599_100573204_100573355_100579023_100579170_100580934
transcript_20158.known	chr15	-	1108	8	FSM	ENSMUSG00000023031.9	ENSMUST00000023775.9	1108	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	12.7998724483441	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCTTGCATTTATAAT	5885	False	NA	2	True	AATAAA	-20	NA	100585802	100572301	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_100572599_100573204_100573355_100579023_100579170_100580767_100580905_100582460_100582587_100583014_100583116_100585005_100585089_100585734
transcript_20159.known	chr15	-	2746	12	FSM	ENSMUSG00000037280.13	ENSMUST00000161514.2	2746	12	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_7	8.71021059418435	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAGAAAACAGAAAAGGAGT	1674	False	NA	NA	False	NA	NA	NA	100618358	100590744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_100591348_100592450_100592604_100594427_100594530_100594999_100595132_100595658_100595860_100596997_100597116_100601228_100601464_100601991_100602142_100611976_100612150_100613808_100614396_100617895_100618117_100618287
transcript_2016.nic	chr1	-	529	3	ISM	ENSMUSG00000009907.18	ENSMUST00000094646.6	4633	11	-12	20559	-12	1111	5prime_fragment	FALSE	canonical	3	531	junction_1	17	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAGAAGAAACCACAGAAGC	12	False	NA	NA	False	ACTAAA	-19	NA	106724470	106717718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_106717816_106719407_106719520_106724150
transcript_20163.known	chr15	+	4418	9	FSM	ENSMUSG00000000532.12	ENSMUST00000000544.12	4418	9	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_8	3.66571957465379	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGATCCCGTCTGCCTT	NA	False	NA	21	True	ATTAAA	-18	NA	101071947	101111565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_101072117_101091812_101092053_101092689_101092939_101096664_101096896_101099858_101100027_101100818_101100976_101102333_101102459_101106960_101107092_101108617
transcript_20164.known	chr15	+	2553	8	FSM	ENSMUSG00000023034.8	ENSMUST00000228985.2	2553	8	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	37.8897433754997	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTTTTTTTCTGTTT	517	False	NA	19	True	AATAAA	-21	NA	101152149	101172676	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_101152233_101156188_101156308_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
transcript_20166.known	chr15	+	2477	7	FSM	ENSMUSG00000023034.8	ENSMUST00000023779.8	2477	7	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	46.5895195653844	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTTTTTTTCTGTTT	NA	False	NA	19	True	AATAAA	-21	NA	101164726	101172676	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_101164853_101167963_101168851_101169616_101169747_101170033_101170186_101170598_101170802_101170895_101171075_101171876
transcript_20168.known	chr15	+	1270	3	FSM	ENSMUSG00000037204.8	ENSMUST00000048393.8	1270	3	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_2	16.5	840	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTCTCTTGGCCTGTGTCCT	8030	False	NA	31	True	AATAAA	-23	NA	101182152	101188826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_101182427_101184813_101185132_101188148
transcript_20169.nnic	chr15	+	1028	8	NNC	ENSMUSG00000023039.18	novel	3563	8	NA	NA	2678	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	10.6885404971485	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAGCTGCATCGGCTAGCT	NA	False	NA	6	True	AATAAA	-13	NA	101313007	101325670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_101313056_101314101_101314163_101316198_101316295_101317383_101317549_101318354_101318481_101321150_101321372_101324969_101325005_101325394
transcript_2017.known	chr1	+	4581	7	FSM	ENSMUSG00000026315.14	ENSMUST00000112706.4	4581	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.34370962471642	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCACTTATTAATGCTTT	6206	False	NA	NA	False	NA	NA	NA	107517735	107538214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_107518018_107525184_107525368_107526629_107526768_107530529_107530648_107532333_107532477_107533513_107533667_107534650
transcript_20170.known	chr15	-	1958	9	FSM	ENSMUSG00000049382.11	ENSMUST00000023952.10	1958	9	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_8	4.93552175559991	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTATGCATTCGTGTAGGT	5892	False	NA	6	True	AATAAA	-32	NA	101912917	101905132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_101905569_101906094_101906154_101906287_101906509_101906825_101906952_101907208_101907374_101907865_101907962_101909014_101909076_101909851_101910061_101912332
transcript_20171.known	chr15	+	1437	7	FSM	ENSMUSG00000023043.8	ENSMUST00000023803.8	1437	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	6.13731754650732	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGTCTTCCTTGGCAG	NA	False	NA	12	True	AATAAA	-24	NA	101936614	101940462	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_101937110_101937900_101937984_101938257_101938415_101939053_101939219_101939329_101939456_101939730_101939955_101940275
transcript_20178.known	chr15	+	3854	15	FSM	ENSMUSG00000058655.10	ENSMUST00000169681.3	3854	15	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_1	87.2144027143242	1081	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTAATGTTGCAGTTTAT	NA	False	NA	49	True	AATAAA	-19	NA	101982207	102005608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_101982399_101990410_101990549_101992595_101992805_101993113_101993231_101994437_101994493_101994939_101995075_101997050_101997189_101997291_101997466_101998300_101998530_101999831_101999930_102001420_102001635_102002092_102002149_102003106_102003213_102003411_102003485_102003687
transcript_20196.known	chr15	-	2456	11	FSM	ENSMUSG00000036966.16	ENSMUST00000154032.2	2456	11	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_5	18.3913022921162	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACGGAAGGGGAATCCTT	NA	False	NA	-5	True	AATAAA	-26	NA	102044669	102024962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_102026149_102026475_102026649_102026726_102026847_102027362_102027421_102027702_102027853_102036973_102037160_102038712_102038849_102039100_102039226_102040302_102040379_102041850_102041998_102044570
transcript_20198.known	chr15	-	2666	10	FSM	ENSMUSG00000036966.16	ENSMUST00000139279.8	2666	10	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_5	18.7142251301576	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGACGGAAGGGGAATCCTT	NA	False	NA	-5	True	AATAAA	-26	NA	102044627	102024962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_102026149_102026475_102026649_102026726_102026847_102027362_102027421_102027702_102027853_102036973_102037160_102038712_102039226_102040302_102040379_102041850_102041998_102044570
transcript_20199.known	chr15	+	2208	15	FSM	ENSMUSG00000023045.14	ENSMUST00000023806.14	2208	15	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_10	3.76408917893011	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATCTTGTCTCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	102058960	102071904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102059148_102059540_102059597_102061582_102061720_102062395_102062456_102062695_102062804_102065246_102065524_102066046_102066117_102066507_102066593_102066988_102067035_102067148_102067279_102069024_102069123_102069486_102069586_102070443_102070580_102070988_102071135_102071331
transcript_202.known	SIRV8002	+	8000	1	FSM	SIRV8002A	SIRV8002	8000	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	8000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV8002_+_0_8000
transcript_2020.known	chr1	-	7063	6	FSM	ENSMUSG00000026374.15	ENSMUST00000027623.9	7063	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	408.588007655633	919	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTGTGTGTGCAAACGCA	NA	False	NA	NA	False	AATAAA	-13	NA	118239146	118222507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_118228768_118232420_118232501_118232929_118233046_118236474_118236572_118237502_118237597_118238730
transcript_20200.nnic	chr15	+	2157	15	NNC	ENSMUSG00000023045.14	novel	1628	13	NA	NA	250	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	5.4962881723459	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAATCTTGTCTCTCTTTT	NA	False	NA	NA	False	NA	NA	NA	102059210	102071904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_+_102059347_102059540_102059597_102061582_102061720_102062395_102062456_102062695_102062804_102065246_102065524_102066046_102066117_102066507_102066593_102066988_102067035_102067148_102067279_102069024_102069123_102069486_102069586_102070443_102070580_102070988_102071135_102071331
transcript_20210.known	chr15	-	2279	15	FSM	ENSMUSG00000023044.3	ENSMUST00000023805.3	2279	15	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_14	14.588400480225	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTGGTATGTTTTAAAG	2729	False	NA	NA	False	AATAAA	-17	NA	102097493	102085433	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_102086222_102086961_102087052_102087215_102087268_102087395_102087596_102087955_102088038_102088263_102088329_102088405_102088523_102094432_102094488_102094828_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321
transcript_20212.known	chr15	-	825	8	FSM	ENSMUSG00000023044.3	ENSMUST00000230687.2	825	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	37.4078459520929	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGGCTGATGAGAGGTGA	6280	False	NA	NA	False	NA	NA	NA	102112680	102094844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_102094909_102095488_102095605_102096000_102096108_102096441_102096533_102096616_102096744_102096977_102097115_102097321_102097398_102112573
transcript_20215.known	chr15	-	2683	15	FSM	ENSMUSG00000001281.11	ENSMUST00000001327.11	2683	15	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_13	6.6719791758105	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAGCCTCTACTTTACT	NA	False	NA	-1	True	AATAAA	-14	NA	102140379	102124429	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_102124703_102124906_102125068_102125326_102125533_102125681_102125902_102126208_102126433_102126931_102127126_102127608_102127756_102130523_102130614_102130776_102130873_102131075_102131235_102131765_102132008_102132736_102132908_102132992_102133195_102135832_102136037_102140285
transcript_20217.nic	chr15	-	2368	8	NIC	ENSMUSG00000001288.16	novel	2953	10	NA	NA	288	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_7	24.6344706226284	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGGGTGTGGATCCCTCTA	NA	False	NA	0	True	AATAAA	-16	NA	102151736	102143372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_102144659_102147239_102147399_102147824_102148030_102148292_102148470_102148562_102148724_102149492_102149635_102150270_102150420_102151647
transcript_20218.known	chr15	-	2718	8	FSM	ENSMUSG00000001288.16	ENSMUST00000063339.14	2718	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	9.19183310979738	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCGGGTGTGGATCCCTC	NA	False	NA	-2	True	AATAAA	-14	NA	102154935	102143374	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_102144659_102147239_102147399_102147824_102148030_102148292_102148470_102148562_102148724_102149492_102149635_102150270_102150420_102154494
transcript_20219.known	chr15	+	1754	2	FSM	ENSMUSG00000045665.6	ENSMUST00000051341.6	1754	2	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_1	0	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCCTCTCCTGTACCCA	NA	False	NA	27	True	AATAAA	-23	NA	102187888	102190189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102188065_102188611
transcript_20224.known	chr15	+	1480	7	FSM	ENSMUSG00000001285.13	ENSMUST00000113682.9	1480	7	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_2	12.1620995994387	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACCCTAGGAGTACATAAC	5927	False	NA	NA	False	AATAGA	-3	NA	102240143	102246574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102240389_102240524_102240638_102242636_102242797_102245266_102245420_102245535_102245659_102245763_102245946_102246070
transcript_20227.known	chr15	+	1062	6	FSM	ENSMUSG00000001289.13	ENSMUST00000166658.8	1062	6	0	0	0	0	multi-exon	FALSE	canonical	3	835	junction_1	29.5932424718887	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCGGGACGCACAACGGC	334	False	NA	NA	False	NA	NA	NA	102234550	102240308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102234696_102234867_102234971_102235252_102235285_102236956_102237032_102237146_102237253_102239707
transcript_20228.known	chr15	+	981	6	FSM	ENSMUSG00000001285.13	ENSMUST00000001331.13	981	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	200.273213386114	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTATTCACCTCTAACTG	5968	False	NA	-1	True	NA	NA	NA	102240184	102246269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102240389_102240524_102240638_102242636_102242797_102245535_102245659_102245763_102245946_102246070
transcript_20229.known	chr15	+	570	5	FSM	ENSMUSG00000001289.13	ENSMUST00000001335.7	570	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	370.883741892254	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAATGGGGTGGTCTATTCT	407	False	NA	26	True	AATAAA	-14	NA	102234623	102239921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102234696_102234867_102234971_102236956_102237032_102237146_102237253_102239707
transcript_2023.known	chr1	+	1889	7	FSM	ENSMUSG00000026377.13	ENSMUST00000027626.13	1889	7	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_6	29.1985539976821	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTGGGACTTTTTTTAA	NA	False	NA	6	True	NA	NA	NA	118249568	118261552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_118249728_118251311_118251456_118255354_118255464_118257082_118257295_118258335_118258393_118260073_118260209_118260479
transcript_20230.known	chr15	+	827	5	FSM	ENSMUSG00000001289.13	ENSMUST00000168805.8	827	5	0	0	0	0	multi-exon	FALSE	canonical	3	835	junction_1	33.0709464636257	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCGGCAATGGCCTCCTGG	386	False	NA	-52	True	AATGAA	-40	NA	102234602	102239843	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102234696_102234867_102235285_102236956_102237032_102237146_102237253_102239707
transcript_20231.known	chr15	+	464	5	FSM	ENSMUSG00000001289.13	ENSMUST00000062492.11	464	5	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	382.106660502012	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGCAATGGCCTCCTGGGA	366	False	NA	-50	True	AATGAA	-42	NA	102234582	102239845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102234696_102235252_102235285_102236956_102237032_102237146_102237253_102239707
transcript_20233.known	chr15	+	830	4	FSM	ENSMUSG00000001289.13	ENSMUST00000165671.8	830	4	0	0	0	0	multi-exon	FALSE	canonical	3	877	junction_3	22.0655588845805	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTTAATAAATGTGACCGC	609	False	NA	2	True	NA	NA	NA	102234825	102239897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102235285_102236956_102237032_102237146_102237253_102239707
transcript_20236.known	chr15	-	1811	16	FSM	ENSMUSG00000036678.9	ENSMUST00000041208.9	1811	16	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_7	35.3844912669692	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGATGTAACTCCGAGTG	NA	False	NA	-5	True	AATAAA	-25	NA	102259194	102246686	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247689_102247759_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
transcript_20246.known	chr15	-	1814	15	FSM	ENSMUSG00000036678.9	ENSMUST00000229589.2	1814	15	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_6	35.0069963852709	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCAGGATGTAACTCCG	NA	False	NA	-9	True	AATAAA	-21	NA	102259130	102246690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_102246941_102247075_102247161_102247251_102247334_102247620_102247854_102247965_102248057_102248198_102248260_102248378_102248504_102248765_102248887_102252523_102252668_102254011_102254111_102254921_102254969_102255112_102255205_102255470_102255527_102258387_102258516_102258930
transcript_20255.known	chr15	-	473	2	FSM	ENSMUSG00000036678.9	ENSMUST00000230349.2	473	2	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACCTCATTTATCCCTA	NA	False	NA	NA	False	NA	NA	NA	102259122	102258234	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_102258516_102258930
transcript_2026.known	chr1	+	849	6	FSM	ENSMUSG00000026377.13	ENSMUST00000112688.10	849	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	175.552157491727	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCGCCAGCGTTCTGTGCA	NA	False	NA	NA	False	AAAAAG	-29	NA	118249583	118260671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_118249728_118255354_118255464_118257082_118257295_118258335_118258393_118260073_118260209_118260479
transcript_20260.nic	chr15	+	1252	5	ISM	ENSMUSG00000023047.12	ENSMUST00000023809.11	1938	11	6521	0	-271	0	3prime_fragment	FALSE	canonical	3	32	junction_1	46.916814683011	74	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTTCATCAATGTGTT	NA	False	NA	13	True	AATAAA	-13	NA	102360322	102363065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_+_102360699_102360821_102360995_102361179_102361328_102361466_102361604_102362647
transcript_20261.nnic	chr15	+	788	3	NIC	ENSMUSG00000023047.12	novel	1938	11	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	69.5	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTTCATCAATGTGTT	NA	False	NA	13	True	AATAAA	-13	NA	102360761	102363065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_102360995_102361466_102361604_102362647
transcript_20262.nic	chr15	+	656	2	ISM	ENSMUSG00000023047.12	ENSMUST00000162893.2	611	3	164	-86	0	1	3prime_fragment	FALSE	canonical	3	16	junction_1	0	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTCTTCATCAATGTGTTT	NA	False	NA	14	True	AATAAA	-14	NA	102360757	102363066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_+_102360995_102362647
transcript_20264.known	chr15	+	1224	5	FSM	ENSMUSG00000023048.14	ENSMUST00000023810.12	1224	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	259.364969685576	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTAGTTTTGTTACTC	2378	False	NA	40	True	AATAAA	-43	NA	102367609	102371241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102367691_102367898_102368017_102368542_102368582_102368804_102369155_102370605
transcript_20265.known	chr15	+	1055	4	FSM	ENSMUSG00000023048.14	ENSMUST00000164957.8	1055	4	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_1	130.244215056008	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTCACCTGTGCCATTACC	2405	False	NA	16	True	AATAAA	-19	NA	102367636	102371217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102367691_102368542_102368582_102368804_102369155_102370605
transcript_20268.known	chr15	+	1020	3	FSM	ENSMUSG00000023048.14	ENSMUST00000164688.2	1020	3	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_2	60	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTCTACTCACCTGTGCC	3286	False	NA	10	True	AATAAA	-13	NA	102368517	102371211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102368582_102368804_102369155_102370605
transcript_20269.known	chr15	+	1353	4	FSM	ENSMUSG00000023048.14	ENSMUST00000171245.8	1353	4	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	222.770933671538	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCTGTGCCATTACCTT	2435	False	NA	18	True	AATAAA	-21	NA	102367666	102371219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102368017_102368542_102368582_102368804_102369155_102370605
transcript_2028.known	chr1	-	616	1	FSM	ENSMUSG00000107722.2	ENSMUST00000203191.2	616	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAACAAAAA	1878	False	NA	NA	False	NA	NA	NA	118386997	118386381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_118386400_118387000
transcript_20280.known	chr15	+	516	5	FSM	ENSMUSG00000056851.15	ENSMUST00000229275.2	516	5	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	63.021325755652	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGCTATATACCCTCAGT	2147	False	NA	12	True	AATAAA	-25	NA	102379111	102383199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009
transcript_20281.known	chr15	+	1576	14	FSM	ENSMUSG00000056851.15	ENSMUST00000229618.2	1576	14	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	146.176678378513	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGGAGCTTTTTCTTTG	2123	False	NA	5	True	ATTAAA	-5	NA	102379087	102407316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102379239_102381695_102381838_102382565_102382590_102382681_102382715_102383009_102383127_102387050_102387183_102391594_102391724_102392600_102392676_102395522_102395565_102396639_102396713_102397210_102397250_102398186_102398243_102399068_102399239_102406923
transcript_20285.nic	chr15	+	1513	9	NIC	ENSMUSG00000023051.12	novel	782	8	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_1	96.5083383703191	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102427145	102432111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_+_102427280_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
transcript_2029.known	chr1	+	9269	15	FSM	ENSMUSG00000026380.11	ENSMUST00000027629.10	9269	15	0	0	0	0	multi-exon	FALSE	canonical	3	1477	junction_7	202.362891350955	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGCTGGAACCTCAACTT	NA	False	NA	19	True	AATAAA	-20	NA	118555675	118612898	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_118555833_118559971_118560124_118580030_118580108_118580598_118580705_118581445_118581553_118584097_118584251_118586737_118586849_118589709_118589802_118592488_118592538_118592627_118592722_118593845_118593937_118596360_118596465_118597118_118597262_118603304_118603357_118605117
transcript_20293.known	chr15	+	782	8	FSM	ENSMUSG00000023051.12	ENSMUST00000142194.3	782	8	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	99.7595067333107	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCCTTGCGGAATTCTGT	NA	False	NA	NA	False	NA	NA	NA	102427236	102431337	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102427280_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283
transcript_20301.known	chr15	+	1278	7	FSM	ENSMUSG00000023051.12	ENSMUST00000100168.10	1278	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	143.475510879809	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACCCTGCTCTCTCTGGC	NA	False	NA	NA	False	AATAAA	-19	NA	102426791	102432037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102427038_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
transcript_20310.known	chr15	+	1523	9	FSM	ENSMUSG00000023051.12	ENSMUST00000023813.9	1523	9	0	0	0	0	multi-exon	TRUE	canonical	3	312	junction_3	28.7706447616316	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTGTTCTTTTTTGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	102426893	102432111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102427038_102427556_102427727_102428909_102429013_102429555_102429649_102430158_102430232_102430415_102430534_102430858_102430987_102431283_102431486_102431619
transcript_20311.known	chr15	-	2523	12	FSM	ENSMUSG00000099083.8	ENSMUST00000184485.8	2523	12	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_11	8.85605736578731	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAACACAAACAAAAAAAGC	NA	False	NA	NA	False	NA	NA	NA	102533874	102442006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_102442874_102446617_102446727_102449174_102449373_102454839_102454993_102455588_102455703_102456207_102456308_102459838_102459997_102462218_102462357_102465894_102466014_102471748_102471846_102502106_102502176_102533473
transcript_20312.known	chr15	-	7147	12	FSM	ENSMUSG00000099083.8	ENSMUST00000184616.8	7147	12	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_11	10.1696355688543	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTATGTTTGGTGCTTCC	NA	False	NA	-1	True	ATTAAA	-16	NA	102533885	102437070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_102442874_102446617_102446727_102449174_102449373_102454839_102454993_102455588_102455703_102456207_102456308_102459838_102459997_102462218_102462357_102465894_102466014_102471748_102471846_102502106_102502176_102533796
transcript_20315.nnic	chr15	-	635	5	NNC	ENSMUSG00000062683.12	novel	731	5	NA	NA	76	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	1923.79668559336	384	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3977	False	NA	-11	True	AATAAA	-17	NA	102579486	102571298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_102571564_102573488_102573683_102574197_102574271_102576145_102576215_102579452
transcript_20316.known	chr15	-	731	5	FSM	ENSMUSG00000062683.12	ENSMUST00000185641.7	731	5	0	0	0	0	multi-exon	FALSE	canonical	3	3206	junction_4	667.870870752723	4012	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3901	False	NA	-11	True	AATAAA	-17	NA	102579562	102571298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_102571564_102573488_102573683_102574197_102574291_102576145_102576215_102579452
transcript_20320.nic	chr15	-	2605	4	NIC	ENSMUSG00000062683.12	novel	731	5	NA	NA	51	0	intron_retention	FALSE	canonical	3	3206	junction_3	741.096634874442	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTGAGTCTCCTGTG	3952	False	NA	-11	True	AATAAA	-17	NA	102579511	102571298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_102573683_102574197_102574291_102576145_102576215_102579452
transcript_20323.nic	chr15	-	576	4	ISM	ENSMUSG00000062683.12	ENSMUST00000185641.7	731	5	49	2031	49	-156	5prime_fragment	FALSE	canonical	3	3206	junction_3	741.096634874442	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGCATGTGTTCGAACACA	3950	False	NA	NA	False	AGTAAA	-17	NA	102579513	102573329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr15_-_102573683_102574197_102574291_102576145_102576215_102579452
transcript_20324.nnic	chr15	-	2561	16	NNC	ENSMUSG00000023055.11	novel	2824	15	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	30.0315389771043	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGTCATGACGTATGTT	NA	False	NA	-6	True	AATATA	-19	NA	102630548	102615211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr15_-_102615220_102615417_102615982_102616980_102617088_102617510_102617711_102617877_102617987_102618305_102618402_102618839_102618966_102619348_102619604_102619777_102619934_102622290_102622382_102624176_102624326_102624664_102624824_102626237_102626429_102627408_102627512_102627976_102628157_102630481
transcript_20325.known	chr15	-	2824	15	FSM	ENSMUSG00000023055.11	ENSMUST00000023818.11	2824	15	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_14	14.2851785613836	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGTCATGACGTATGTT	NA	False	NA	-6	True	AATATA	-19	NA	102630613	102615211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_102615982_102616980_102617088_102617510_102617711_102617877_102617987_102618305_102618402_102618839_102618966_102619348_102619604_102619777_102619934_102622290_102622382_102624176_102624326_102624664_102624824_102626237_102626429_102627408_102627512_102627976_102628157_102630481
transcript_20327.known	chr15	+	2461	2	FSM	ENSMUSG00000001655.7	ENSMUST00000001700.7	2461	2	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATTGCTTGGGATCCTT	NA	False	NA	17	True	AATAAA	-25	NA	102829537	102837249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102830353_102835603
transcript_20328.nnic	chr15	-	666	2	Antisense	novelGene_ENSMUSG00000001655.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	5	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGTTTGTGGGGTTTTTTT	NA	False	NA	NA	False	AATAAA	-39	NA	102840092	102837212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr15_-_102837498_102839711
transcript_20330.known	chr15	+	1983	2	FSM	ENSMUSG00000075394.5	ENSMUST00000100164.5	1983	2	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTCAATGTCTGATGGTTTC	5972	False	NA	30	True	AATAAA	-24	NA	102942820	102945278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_102943588_102944062
transcript_20331.known	chr15	-	3882	7	FSM	ENSMUSG00000036061.11	ENSMUST00000229371.2	3882	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	43.7607129740821	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGTTTTGCAAATTACT	NA	False	NA	-1	True	NA	NA	NA	103075519	103061716	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_103064629_103066043_103066346_103066583_103066655_103071698_103071865_103072962_103073139_103073227_103073391_103075427
transcript_20333.known	chr15	-	491	3	FSM	ENSMUSG00000036061.11	ENSMUST00000231198.2	491	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	46	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTCCGGACCCTCTGC	NA	False	NA	NA	False	NA	NA	NA	103071745	103064486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_103064629_103066043_103066346_103071698
transcript_20335.known	chr15	-	1146	6	FSM	ENSMUSG00000009575.15	ENSMUST00000122182.2	1146	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_5	207.473757376686	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGCTGGCCTTTGTTTTG	NA	False	NA	-10	True	NA	NA	NA	103123732	103107681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103123448_103123549_103123694
transcript_2034.known	chr1	+	478	3	FSM	ENSMUSG00000026380.11	ENSMUST00000190652.2	478	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	993	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGTCTTTGTAATTTTA	NA	False	NA	NA	False	NA	NA	NA	118555674	118565496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_118555833_118559971_118560124_118565328
transcript_20341.nnic	chr15	-	1061	6	NIC	ENSMUSG00000009575.15	novel	1146	6	NA	NA	-79	-210	combination_of_known_splicesites	FALSE	canonical	3	31	junction_5	201.842512865848	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTAAGTGTAGCTCTGTG	NA	False	NA	-11	True	AATATA	-14	NA	103148322	103107891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103123448_103123549_103148159
transcript_20342.known	chr15	-	8803	5	FSM	ENSMUSG00000009575.15	ENSMUST00000118152.8	8803	5	0	0	0	0	multi-exon	FALSE	canonical	3	412	junction_4	23.5902522241709	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAGTGGTAGTTTGAAG	NA	False	NA	0	True	AATAAA	-22	NA	103148243	103099970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103148159
transcript_20343.known	chr15	-	3661	5	FSM	ENSMUSG00000009575.15	ENSMUST00000108813.10	3661	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	189.635176061827	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGAAGAGGGCATTGAATCT	NA	False	NA	NA	False	NA	NA	NA	103123779	103105113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_103108219_103109227_103109329_103113918_103114106_103121498_103121682_103123694
transcript_2035.nnic	chr1	-	598	2	NNC	ENSMUSG00000048402.15	novel	6637	14	NA	NA	-129	-184451	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACTACTGCAACTTGATC	1100	False	NA	-17	True	NA	NA	NA	118981478	118980222	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_118980374_118981031
transcript_20363.known	chr15	+	1918	11	FSM	ENSMUSG00000046434.17	ENSMUST00000036004.16	1918	11	0	0	0	0	multi-exon	FALSE	canonical	3	2223	junction_7	4396.07925429012	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	False	NA	-1	True	AATAAA	-17	NA	103148858	103153382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103151348_103151508_103152051_103152208_103152385_103152456_103152682
transcript_20365.known	chr15	+	1283	11	FSM	ENSMUSG00000046434.17	ENSMUST00000230171.2	1283	11	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_9	4985.84843431888	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGTTTCTTGTCTTCCT	NA	False	NA	13	True	AATAAA	-13	NA	103148858	103155119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103154772_103154849_103154971
transcript_20366.known	chr15	+	1737	10	FSM	ENSMUSG00000046434.17	ENSMUST00000087351.9	1737	10	0	0	0	0	multi-exon	FALSE	canonical	3	9291	junction_7	1545.88284736515	898	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	False	NA	-1	True	AATAAA	-17	NA	103148880	103153382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152051_103152208_103152385_103152456_103152682
transcript_20369.known	chr15	+	1541	9	FSM	ENSMUSG00000046434.17	ENSMUST00000231141.2	1541	9	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_7	4388.75483480224	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGGAATGACAACTGTATG	NA	False	NA	-1	True	AATAAA	-17	NA	103148920	103153382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_103148956_103149506_103149624_103149872_103150020_103150329_103150541_103150632_103150726_103150806_103150900_103151070_103151146_103152385_103152456_103152682
transcript_2037.nnic	chr1	+	543	4	Antisense	novelGene_ENSMUSG00000099860.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	3.29983164553722	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGGTAATAGTAACACCTA	NA	False	NA	NA	False	NA	NA	NA	119231435	119247245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr1_+_119231445_119233326_119233438_119234108_119234328_119247041
transcript_20372.known	chr15	-	1697	3	FSM	ENSMUSG00000058794.13	ENSMUST00000075192.13	1697	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	8	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTATTGTGTCTTCTTTGA	4171	False	NA	NA	False	CATAAA	-20	NA	103163866	103156638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_103157876_103159355_103159526_103163576
transcript_20376.known	chr15	+	1676	9	FSM	ENSMUSG00000060992.10	ENSMUST00000100162.5	1676	9	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	173.470458580128	1070	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTGTGATGGCTCTGT	NA	False	NA	32	True	AATAAA	-20	NA	103181336	103208295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_+_103181369_103197527_103197597_103199101_103199184_103199755_103199848_103203148_103203205_103204959_103205038_103205160_103205213_103206313_103206353_103207119
transcript_20382.known	chr15	-	2298	8	FSM	ENSMUSG00000000552.11	ENSMUST00000168828.3	2298	8	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	68.2405708519799	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGGACTCAGACTGTCT	6919	False	NA	-12	True	AATAAA	-24	NA	103248520	103222321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_103223653_103223787_103223884_103224053_103224224_103224308_103224552_103226375_103226539_103228716_103228828_103241491_103241629_103248473
transcript_20383.known	chr15	-	4382	30	FSM	ENSMUSG00000000555.9	ENSMUST00000023128.8	4382	30	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_15	17.8822280065433	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCAGTCTGTCCTTCCAT	NA	False	NA	2	True	AATAAA	-28	NA	103275190	103252712	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_103253780_103254378_103254502_103255007_103255110_103256097_103256212_103256318_103256403_103258038_103258192_103258591_103258698_103258800_103258882_103259000_103259081_103259190_103259284_103259372_103259524_103259804_103259873_103259967_103260106_103260441_103260597_103260684_103260741_103260910_103261013_103261342_103261389_103261569_103261762_103262000_103262210_103262473_103262527_103262694_103262752_103264352_103264397_103264503_103264549_103264742_103264869_103265205_103265252_103265346_103265409_103265618_103265740_103265874_103265988_103267476_103267608_103274726
transcript_20385.known	chr15	-	700	10	FSM	ENSMUSG00000022487.15	ENSMUST00000141364.8	700	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	37.8499310957182	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTTTTTTCTCTTTATC	8453	False	NA	-55	True	NA	NA	NA	103338806	103310940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338603_103338685_103338782
transcript_20386.known	chr15	-	819	9	FSM	ENSMUSG00000022487.15	ENSMUST00000023129.15	819	9	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_8	17.7019596372831	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGCCAAATATTTATATAT	8362	False	NA	54	True	TTTAAA	-29	NA	103338897	103310831	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103336766_103336812_103338782
transcript_20390.nnic	chr15	-	656	8	NIC	ENSMUSG00000022487.15	novel	767	8	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_7	42.0432236283236	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCAAGTACTTTTTTTTT	8427	False	NA	1	True	AGTAAA	-19	NA	103338832	103310884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103333857_103333959_103338782
transcript_20391.nnic	chr15	-	622	8	NIC	ENSMUSG00000022487.15	novel	819	9	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_6	42.4446818860521	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCAAGTACTTTTTTTTT	8405	False	NA	1	True	AGTAAA	-19	NA	103338854	103310884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr15_-_103310986_103313235_103313270_103318050_103318146_103328384_103328449_103328899_103328984_103329616_103329744_103336766_103336812_103338782
transcript_20392.known	chr15	-	1306	7	FSM	ENSMUSG00000022490.8	ENSMUST00000023133.8	1306	7	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_5	12.4688500761787	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCTTTCACCCCCTTTTC	2052	False	NA	NA	False	ATTAAA	-21	NA	103446430	103438705	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_103439377_103439780_103439888_103440752_103440909_103441464_103441529_103441883_103441922_103442776_103442838_103446221
transcript_20393.known	chr15	-	821	6	FSM	ENSMUSG00000022490.8	ENSMUST00000228813.2	821	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	80.2331602269286	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGTCTGGAAGTAGGAGGT	2061	False	NA	NA	False	AATAGA	-7	NA	103446421	103439120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr15_-_103439377_103439780_103439888_103440752_103440909_103441464_103441529_103441883_103441922_103446221
transcript_20394.known	chr16	+	3241	6	FSM	ENSMUSG00000022529.12	ENSMUST00000023176.5	3241	6	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	57.158026557956	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACATGAATATGTATAAAT	NA	False	NA	3	True	AATAAA	-12	NA	3561956	3568645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_3562632_3563640_3563822_3564285_3564360_3564634_3564759_3566012_3566130_3566575
transcript_20401.nnic	chr16	+	1709	13	NNC	ENSMUSG00000014232.15	novel	1779	12	NA	NA	-71	278	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	43.5178762757968	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTATGACTCTTTTGTTTT	3237	False	NA	NA	False	NA	NA	NA	3726831	3759289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_3727018_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741703_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755422_3755479_3758631_3759022_3759226
transcript_20402.known	chr16	+	1779	12	FSM	ENSMUSG00000014232.15	ENSMUST00000040881.14	1779	12	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_6	16.217019933921	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGGCTGCTATTATTAT	3094	False	NA	7	True	AATACA	-17	NA	3726688	3759011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_3727018_3729314_3729427_3731148_3731234_3733286_3733467_3735689_3735786_3737344_3737429_3741703_3741838_3746353_3746496_3747703_3747777_3751570_3751679_3755422_3755479_3758631
transcript_20409.known	chr16	+	2350	7	FSM	ENSMUSG00000005982.15	ENSMUST00000186375.8	2350	7	0	0	0	0	multi-exon	FALSE	canonical	1	49	junction_5	41.1774614726713	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTCTAGTTATTGGC	NA	False	NA	39	True	AATAAA	-20	NA	3702546	3722634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718742_3719646_3719990_3721329
transcript_20410.nnic	chr16	+	2408	7	NNC	ENSMUSG00000005982.15	novel	2350	7	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	1	23	junction_6	52.451300163951	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTCTCTAGTTATTGGC	NA	False	NA	39	True	AATAAA	-20	NA	3702498	3722634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718506_3718742_3719646_3720000_3721329
transcript_20413.known	chr16	+	1279	7	FSM	ENSMUSG00000005982.15	ENSMUST00000143537.9	1279	7	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_4	55.52677032047	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGCTGGAAACGGGGAAG	NA	False	NA	NA	False	NA	NA	NA	3702546	3721613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_3702671_3712232_3712349_3715114_3715245_3717735_3717833_3718556_3718742_3719646_3719990_3721329
transcript_20419.known	chr16	+	515	3	FSM	ENSMUSG00000014232.15	ENSMUST00000137745.2	515	3	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	17.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGGCTCTTTCGGAGTC	3308	False	NA	NA	False	AATAAA	-14	NA	3726902	3731436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_3727018_3729314_3729427_3731148
transcript_2042.known	chr1	-	2289	5	FSM	ENSMUSG00000004451.15	ENSMUST00000004565.15	2289	5	0	0	0	0	multi-exon	FALSE	canonical	3	967	junction_4	66.8169140263152	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGCCCTTTTTCCTGCAT	NA	False	NA	-4	True	AATAAA	-21	NA	119432524	119398034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_119399556_119403624_119403803_119405644_119405854_119411223_119411387_119432306
transcript_20421.known	chr16	-	2592	3	FSM	ENSMUSG00000005983.16	ENSMUST00000115859.8	2592	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCCTGGCACAGTGAGGG	NA	False	NA	NA	False	AATAAA	-12	NA	3726553	3722166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_3724165_3724704_3725059_3726313
transcript_20422.known	chr16	-	715	2	FSM	ENSMUSG00000039738.17	ENSMUST00000171762.2	715	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCCAGATCAGCCAGTGT	NA	False	NA	NA	False	NA	NA	NA	3821634	3818866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_3819543_3821595
transcript_20426.known	chr16	-	2320	18	FSM	ENSMUSG00000005981.12	ENSMUST00000006137.9	2320	18	0	0	0	0	multi-exon	TRUE	canonical	3	963	junction_15	112.803285922348	498	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGACGTTTTCTCTGTTCT	NA	False	NA	-3	True	ATTAAA	-22	NA	3895691	3857834	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_3858089_3858222_3858296_3861816_3861963_3862476_3862563_3863306_3863446_3863743_3863930_3867214_3867363_3870728_3870799_3871344_3871466_3872617_3872774_3873660_3873735_3874193_3874304_3878620_3878782_3880193_3880266_3883096_3883238_3886119_3886203_3886720_3886886_3895556
transcript_2043.nnic	chr1	-	2090	4	NIC	ENSMUSG00000004451.15	novel	2289	5	NA	NA	36	0	combination_of_known_splicesites	TRUE	canonical	2	24	junction_3	489.375792889949	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGCCCTTTTTCCTGCAT	NA	False	NA	-4	True	AATAAA	-21	NA	119432488	119398034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_119399556_119403624_119403803_119405644_119405854_119432306
transcript_20438.known	chr16	-	2247	7	FSM	ENSMUSG00000005718.9	ENSMUST00000005862.9	2247	7	0	0	0	0	multi-exon	TRUE	canonical	3	103	junction_5	11.6010057035299	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTAGTTATTGAGGATG	NA	False	NA	0	True	AATAAA	-22	NA	4377718	4362524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_4363612_4365118_4365275_4367194_4367336_4369093_4369265_4369609_4369709_4369798_4369965_4377291
transcript_2044.known	chr1	+	681	2	FSM	ENSMUSG00000098923.2	ENSMUST00000183607.2	681	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCTTACATTTCCATTT	NA	False	NA	NA	False	NA	NA	NA	119453902	119454959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_119454278_119454653
transcript_20441.known	chr16	-	596	5	FSM	ENSMUSG00000014301.14	ENSMUST00000014445.7	596	5	0	0	0	0	multi-exon	FALSE	canonical	3	1132	junction_4	70.3491293478462	352	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTCCTGTTTGAGAAGGT	NA	False	NA	-15	True	AATAAA	-28	NA	4442852	4434327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_4434498_4434676_4434743_4434989_4435127_4435782_4435868_4442714
transcript_20445.known	chr16	+	2648	12	FSM	ENSMUSG00000004069.18	ENSMUST00000060067.12	2648	12	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_10	248.960018695956	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	35	True	TTTAAA	-8	NA	4501933	4525559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4523707_4523825_4524431
transcript_20448.known	chr16	+	2505	11	FSM	ENSMUSG00000004069.18	ENSMUST00000115854.4	2505	11	0	0	0	0	multi-exon	FALSE	canonical	3	681	junction_10	58.1896898084188	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGTCATTTCTTCTTTG	NA	False	NA	35	True	TTTAAA	-8	NA	4501959	4525559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_4502209_4505100_4505235_4507844_4507929_4511075_4511277_4512227_4512381_4514252_4514401_4515114_4515180_4517612_4517742_4519032_4519149_4520074_4520173_4524431
transcript_20453.known	chr16	-	1459	6	FSM	ENSMUSG00000063445.15	ENSMUST00000079130.14	1459	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	91.0788669231233	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTTTCCCAAAAGAAAAGG	4596	False	NA	-6	True	AATAAA	-18	NA	4537220	4529180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_4529468_4531503_4531695_4532280_4532531_4533464_4533495_4534160_4534400_4536758
transcript_20456.known	chr16	-	2440	5	FSM	ENSMUSG00000063445.15	ENSMUST00000120056.8	2440	5	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_4	12.1243556529821	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGAAACTTTTGTCCTTT	4843	False	NA	NA	False	NA	NA	NA	4536973	4527922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_4529468_4531503_4531695_4532280_4532531_4534160_4534400_4536758
transcript_20457.known	chr16	-	1306	5	FSM	ENSMUSG00000063445.15	ENSMUST00000115851.10	1306	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	76.6811580507233	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGTTTCCCAAAAGAAAAGG	4796	False	NA	-6	True	AATAAA	-18	NA	4537020	4529180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_4529545_4531503_4531695_4532280_4532531_4534160_4534400_4536758
transcript_20458.known	chr16	-	1155	5	FSM	ENSMUSG00000063445.15	ENSMUST00000074970.8	1155	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	77.9723508687535	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGCTTCCTTAATGGTT	4840	False	NA	NA	False	NA	NA	NA	4536976	4530158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_4530416_4531503_4531695_4532280_4532531_4534160_4534400_4536758
transcript_20461.nic	chr16	-	1174	4	ISM	ENSMUSG00000063445.15	ENSMUST00000074970.8	1155	5	-47	1116	-3	1098	5prime_fragment	FALSE	canonical	3	167	junction_3	9.79795897113271	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGGCTAGGTTTTTTTG	4793	False	NA	NA	False	NA	NA	NA	4537023	4531274	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_-_4531695_4532280_4532531_4534160_4534400_4536758
transcript_20464.known	chr16	+	1730	6	FSM	ENSMUSG00000004070.16	ENSMUST00000004172.15	1730	6	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_2	14.4277510374971	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGACCTGTGATTTTTCCT	NA	False	NA	9	True	CATAAA	-17	NA	4544226	4584606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_4544336_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
transcript_20466.nic	chr16	+	1322	6	NIC	ENSMUSG00000004070.16	novel	1392	6	NA	NA	31	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	152.242438235861	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCTGCCTAACAGCATTT	NA	False	NA	14	True	AATAAA	-15	NA	4574797	4584113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_4574992_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
transcript_20467.known	chr16	+	1392	6	FSM	ENSMUSG00000004070.16	ENSMUST00000118885.8	1392	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	156.624391459313	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGCCTCTGCCTAACAGC	NA	False	NA	10	True	AATAAA	-11	NA	4574766	4584109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_4575035_4580422_4580542_4581592_4581711_4582469_4582962_4583626_4583754_4583841
transcript_20469.known	chr16	-	3953	6	FSM	ENSMUSG00000004071.14	ENSMUST00000004173.12	3953	6	0	0	0	0	multi-exon	FALSE	canonical	3	434	junction_5	28.1240110937256	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGACTTTGGCTCTATACT	NA	False	NA	-3	True	TATAAA	-21	NA	4607854	4583324	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4607694
transcript_2047.known	chr1	-	6442	25	FSM	ENSMUSG00000026383.15	ENSMUST00000052404.13	6442	25	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_7	8.61674322983393	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCATGTTTTATGAGCTGT	NA	False	NA	-11	True	AATAAA	-13	NA	119576666	119472766	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_119476926_119477616_119477748_119478251_119478294_119481935_119482011_119482781_119482873_119495525_119495591_119497774_119497904_119500535_119500634_119506643_119506808_119526734_119526851_119527927_119527968_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576514
transcript_20470.known	chr16	-	2554	6	FSM	ENSMUSG00000004071.14	ENSMUST00000118703.8	2554	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	186.698259231306	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCTATTTTAGACCAT	NA	False	NA	-14	True	AATAAA	-14	NA	4608156	4584704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_4586514_4586608_4586883_4587503_4587660_4587906_4588016_4588534_4588600_4608015
transcript_20471.known	chr16	-	1964	6	FSM	ENSMUSG00000004071.14	ENSMUST00000117713.8	1964	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	194.363988434072	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGGCCTCTGCTGTCTTG	NA	False	NA	-19	True	ATTAAA	-21	NA	4607794	4585202	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_4586514_4586608_4586832_4587503_4587660_4587906_4588016_4588534_4588600_4607694
transcript_2048.known	chr1	-	3370	25	FSM	ENSMUSG00000026383.15	ENSMUST00000163147.8	3370	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	20.0580754034102	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGATAATG	NA	False	NA	NA	False	TTTAAA	-37	NA	119576664	119475860	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_119476926_119477616_119477748_119478251_119478294_119481935_119482011_119482781_119482873_119495525_119495591_119497774_119497904_119500535_119500634_119506643_119506808_119526734_119526851_119527927_119527992_119532957_119532986_119535716_119535824_119536846_119537017_119543075_119543146_119544130_119544220_119545093_119545182_119545283_119545405_119547896_119547950_119548404_119548450_119549615_119549695_119551655_119551699_119561274_119561380_119570206_119570389_119576514
transcript_20484.nic	chr16	-	1734	4	NIC	ENSMUSG00000039568.7	novel	1851	3	NA	NA	-162	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	161.605142932464	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCACCAGGCTCTGTAGT	NA	False	NA	-11	True	NA	NA	NA	4698341	4692651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_4692962_4693230_4693734_4694225_4694286_4697480
transcript_20485.known	chr16	-	1851	3	FSM	ENSMUSG00000039568.7	ENSMUST00000037843.7	1851	3	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_1	8.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTAGTCTTGCCTCAT	NA	False	NA	-1	True	NA	NA	NA	4698179	4692641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_4693734_4694225_4694286_4697480
transcript_20488.known	chr16	+	2250	17	FSM	ENSMUSG00000022517.18	ENSMUST00000229038.2	2250	17	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	129.828191757415	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCAGGCTGTCACTGCTGC	2943	False	NA	NA	False	NA	NA	NA	4704131	4755285	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_4704338_4725228_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4752058_4752104_4754759
transcript_20490.known	chr16	+	3095	16	FSM	ENSMUSG00000022517.18	ENSMUST00000023159.10	3095	16	0	0	0	0	multi-exon	TRUE	canonical	3	266	junction_15	54.4223810169636	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTATGTGTGCCTTTGTT	2924	False	NA	13	True	AATAAA	-14	NA	4704112	4756159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_4704338_4725231_4725351_4728583_4728673_4729185_4729333_4731553_4731672_4733616_4733684_4733968_4734019_4736729_4736778_4738176_4738246_4740457_4740618_4742286_4742397_4745538_4745766_4748554_4748679_4748976_4749020_4750063_4750163_4754759
transcript_20492.known	chr16	+	1162	4	FSM	ENSMUSG00000022516.11	ENSMUST00000229961.2	1162	4	0	0	0	0	multi-exon	FALSE	canonical	1	32	junction_3	242.27670131484	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCCATGGCCACATCTTT	95	False	NA	25	True	AATAAA	-31	NA	4756975	4758896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_4757158_4757241_4757503_4758059_4758180_4758297
transcript_20493.known	chr16	+	1618	3	FSM	ENSMUSG00000022516.11	ENSMUST00000230931.2	1618	3	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_2	18	278	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTGCTTCTGAGTGCCA	NA	False	NA	12	True	AATAAA	-18	NA	4756624	4758883	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_4757158_4757241_4757503_4758059
transcript_20495.known	chr16	+	1329	3	FSM	ENSMUSG00000022516.11	ENSMUST00000050881.10	1329	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	274	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGTTGCTTCTGAGTG	105	False	NA	9	True	AATAAA	-15	NA	4756985	4758880	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_4757158_4757241_4757578_4758059
transcript_20496.known	chr16	+	660	2	FSM	ENSMUSG00000022516.11	ENSMUST00000230224.2	660	2	0	0	0	0	multi-exon	FALSE	canonical	3	563	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATTGAGACCAAAAAGAC	111	False	NA	NA	False	GGGGCT	-37	NA	4756991	4757735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_4757158_4757241
transcript_20497.known	chr16	-	2398	17	FSM	ENSMUSG00000022515.7	ENSMUST00000023157.6	2398	17	0	0	0	0	multi-exon	TRUE	canonical	3	59	junction_1	12.8608842522589	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGGGGGCTCATTTGT	8223	False	NA	-5	True	AATAAA	-13	NA	4782037	4759299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
transcript_20501.nic	chr16	-	2065	15	NIC	ENSMUSG00000022515.7	novel	2398	17	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_14	24.9154693362356	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGGGGGCTCATTTGT	8185	False	NA	-5	True	AATAAA	-13	NA	4782075	4759299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_4759662_4759762_4759852_4760074_4760159_4760556_4760643_4760942_4761116_4761422_4761565_4763918_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4781983
transcript_20504.known	chr16	-	1779	11	FSM	ENSMUSG00000022515.7	ENSMUST00000229765.2	1779	11	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_10	6.04069532421558	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTAATATGCCTTTTGT	8192	False	NA	NA	False	TATAAA	-22	NA	4782068	4763632	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_4764044_4765128_4765297_4765512_4765623_4766089_4766228_4768476_4768633_4771682_4771819_4773721_4773804_4775504_4775627_4775831_4776031_4778260_4778433_4781983
transcript_20505.nic	chr16	+	389	4	NIC	ENSMUSG00000096215.9	novel	382	4	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	19.6694913225759	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGTCTGGACTGTGTT	NA	False	NA	11	True	NA	NA	NA	4825132	4826173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_4825190_4825607_4825753_4825835_4825919_4826069
transcript_20506.known	chr16	+	382	4	FSM	ENSMUSG00000096215.9	ENSMUST00000184439.8	382	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	17.326921891156	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCGAGTCTGGACTGT	NA	False	NA	8	True	NA	NA	NA	4825151	4826170	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_4825190_4825607_4825753_4825835_4825934_4826069
transcript_20507.known	chr16	+	399	4	FSM	ENSMUSG00000096215.9	ENSMUST00000185147.8	399	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	9.41629792788369	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGTCTGGACTGTGTT	NA	False	NA	11	True	NA	NA	NA	4825215	4826173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_4825283_4825607_4825753_4825835_4825919_4826069
transcript_20508.known	chr16	+	429	4	FSM	ENSMUSG00000096215.9	ENSMUST00000178155.9	429	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	13.8804418757713	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGTCTGGACTGTGTT	NA	False	NA	11	True	NA	NA	NA	4825200	4826173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_4825283_4825607_4825753_4825835_4825934_4826069
transcript_20509.known	chr16	+	247	3	FSM	ENSMUSG00000096215.9	ENSMUST00000183477.8	247	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	21.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCGAGTCTGGACTGTGTT	NA	False	NA	11	True	NA	NA	NA	4825222	4826173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_4825283_4825835_4825919_4826069
transcript_2051.known	chr1	-	3341	2	FSM	ENSMUSG00000036975.6	ENSMUST00000037906.6	3341	2	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	0	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCAGCCTTAAGTTTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	119840938	119835619	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_119838885_119840862
transcript_20510.known	chr16	+	381	4	FSM	ENSMUSG00000096215.9	ENSMUST00000184256.7	381	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	18.2086670449969	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCGAGTCTGGACTGT	NA	False	NA	8	True	NA	NA	NA	4825215	4826170	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_4825283_4825637_4825753_4825835_4825934_4826069
transcript_20516.known	chr16	-	1355	11	FSM	ENSMUSG00000022540.17	ENSMUST00000202281.4	1355	11	0	0	0	0	multi-exon	FALSE	canonical	3	412	junction_7	47.5572286829247	419	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831381	4826593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829557_4830104_4830160_4830290_4830374_4831166_4831239_4831326
transcript_20518.known	chr16	-	1431	11	FSM	ENSMUSG00000022540.17	ENSMUST00000023191.17	1431	11	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	153.714052708267	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTCTGTCTGTCTGTCT	NA	False	NA	-2	True	AATAAA	-18	NA	4831391	4826593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_4827117_4827341_4827469_4827764_4827815_4827903_4828018_4828330_4828430_4828710_4828807_4829475_4829623_4830104_4830160_4830290_4830374_4831166_4831239_4831326
transcript_2052.known	chr1	-	1311	2	FSM	ENSMUSG00000050777.8	ENSMUST00000056089.8	1311	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTCCTATGACTCTTTT	NA	False	NA	NA	False	NA	NA	NA	120001804	119995106	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_119996055_120001441
transcript_2053.known	chr1	-	569	4	FSM	ENSMUSG00000026385.17	ENSMUST00000027634.13	569	4	0	0	0	0	multi-exon	FALSE	canonical	3	2709	junction_1	24.2532930181083	1146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCTGTTGTCTGGGTGCGT	NA	False	NA	-1	True	ATTAAA	-29	NA	120048808	120041009	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_120041264_120044115_120044179_120047624_120047743_120048674
transcript_20534.nnic	chr16	-	3416	17	NNC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_14	374.363788438131	89	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAACTGTATCATTGTA	8116	False	NA	-8	True	AATAAA	-13	NA	4867721	4831772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866093_4866218_4866613_4866651_4867669
transcript_20536.known	chr16	-	3280	16	FSM	ENSMUSG00000022536.15	ENSMUST00000023189.15	3280	16	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_6	221.604291976086	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAACTGTATCATTGTA	8110	False	NA	-8	True	AATAAA	-13	NA	4867727	4831772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839295_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
transcript_20537.known	chr16	-	3292	16	FSM	ENSMUSG00000022536.15	ENSMUST00000115844.3	3292	16	0	0	0	0	multi-exon	FALSE	canonical	3	744	junction_6	120.52477845747	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAACTGTATCATTGTA	8116	False	NA	-8	True	AATAAA	-13	NA	4867721	4831772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_4833467_4836263_4836389_4836703_4836884_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
transcript_20540.nnic	chr16	-	3165	15	NIC	ENSMUSG00000022536.15	novel	3292	16	NA	NA	-47	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_2	314.772974555002	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCATAACTGTATCATTGTA	8063	False	NA	-8	True	AATAAA	-13	NA	4867774	4831772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_4833467_4836263_4836389_4837150_4837314_4838130_4838233_4839201_4839313_4844371_4844472_4847197_4847272_4847366_4847418_4848048_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613_4866651_4867669
transcript_20548.known	chr16	-	3222	8	FSM	ENSMUSG00000022536.15	ENSMUST00000231132.2	3222	8	0	0	0	0	multi-exon	FALSE	canonical	3	1044	junction_7	65.3951879899806	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8116	False	NA	NA	False	NA	NA	NA	4867721	4843716	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_4844472_4847197_4847272_4847366_4848106_4849750_4849838_4854099_4854340_4854782_4854922_4865597_4865678_4866613
transcript_20549.known	chr16	-	2143	10	FSM	ENSMUSG00000023143.11	ENSMUST00000023911.11	2143	10	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	7.98764478027175	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCACCAGGGGGCGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	5021876	5013152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_5013923_5015418_5015483_5015575_5015678_5016439_5016488_5016594_5016801_5017479_5017609_5017806_5017916_5019237_5019378_5021204_5021664_5021760
transcript_20552.known	chr16	+	1755	13	FSM	ENSMUSG00000039427.15	ENSMUST00000100196.9	1755	13	0	0	0	0	multi-exon	TRUE	canonical	3	181	junction_11	10.4029910228848	247	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGGAAGTGTTTGCTCT	1280	False	NA	17	True	AATAAA	-18	NA	5051484	5062767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_5051722_5052829_5052908_5053026_5053131_5054183_5054333_5056508_5056599_5056919_5057031_5057769_5057892_5058007_5058047_5058322_5058383_5059149_5059261_5060352_5060468_5061551_5061628_5062304
transcript_2056.known	chr1	+	488	6	FSM	ENSMUSG00000026388.16	ENSMUST00000112644.9	488	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	7.2773621594641	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTGATTTATCTCTA	NA	False	NA	15	True	AATAAA	-16	NA	120048924	120115919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_120048948_120078332_120078478_120088335_120088387_120093864_120093903_120099130_120099213_120115770
transcript_20565.known	chr16	-	2170	8	FSM	ENSMUSG00000022544.15	ENSMUST00000064635.12	2170	8	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	73.3462573645565	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGCGCATGTGCACAG	NA	False	NA	-2	True	NA	NA	NA	5073847	5062015	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_5063250_5065316_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
transcript_20570.nnic	chr16	-	1460	8	NNC	ENSMUSG00000022544.15	novel	2170	8	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	166.156061384151	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGACTGTCCTGTCAGAC	NA	False	NA	-5	True	AATAAA	-17	NA	5073888	5062742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_5063250_5065340_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
transcript_20574.nnic	chr16	-	1248	8	NNC	ENSMUSG00000022544.15	novel	2170	8	NA	NA	-41	-212	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	166.156061384151	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAGAAAAGGAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	5073888	5062954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_5063250_5065340_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
transcript_2058.known	chr1	+	401	5	FSM	ENSMUSG00000026388.16	ENSMUST00000056038.15	401	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	17.3835410661925	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTTGATTTATCTCTA	NA	False	NA	15	True	AATAAA	-16	NA	120048929	120115919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_120048948_120078332_120078478_120088335_120088387_120093864_120093903_120115770
transcript_20583.known	chr16	-	987	7	FSM	ENSMUSG00000022544.15	ENSMUST00000139584.2	987	7	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_1	22.2517165380311	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTTCTCTTTCTGTGG	NA	False	NA	-2	True	NA	NA	NA	5073820	5065238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_5065464_5066428_5066695_5066775_5066910_5067210_5067313_5068338_5068420_5070888_5070952_5073704
transcript_2059.known	chr1	-	2752	5	FSM	ENSMUSG00000026389.17	ENSMUST00000112640.8	2752	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	6.57647321898295	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTACAATAGTTAAAATTGT	NA	False	NA	-21	True	NA	NA	NA	120193014	120154152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_120155659_120161971_120162137_120169161_120169690_120171497_120171998_120192961
transcript_20590.nnic	chr16	+	1394	11	NNC	ENSMUSG00000039345.17	novel	1825	11	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	58.7404460316739	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATCTTGCCCTTGAGAT	NA	False	NA	3	True	AATAAA	-12	NA	8288615	8308060	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_8288730_8291694_8291831_8295830_8296194_8299990_8300032_8300119_8300265_8302104_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
transcript_20591.known	chr16	+	1825	11	FSM	ENSMUSG00000039345.17	ENSMUST00000046470.16	1825	11	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_3	20.7113495455994	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTCAAGTCGTCTGGGTG	NA	False	NA	NA	False	NA	NA	NA	8288651	8308548	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_8288730_8291694_8291831_8295830_8296194_8299990_8300032_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
transcript_20593.nnic	chr16	+	1332	10	NIC	ENSMUSG00000039345.17	novel	1825	11	NA	NA	-36	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_3	49.6680337868021	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATCTTGCCCTTGAGAT	NA	False	NA	3	True	AATAAA	-12	NA	8288615	8308060	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_8288730_8291694_8291831_8295830_8296194_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
transcript_20594.nnic	chr16	+	1183	10	NNC	ENSMUSG00000039345.17	novel	1825	11	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	71.3963031169362	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATCTTGCCCTTGAGAT	NA	False	NA	3	True	AATAAA	-12	NA	8288615	8308060	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_8288730_8291694_8291831_8295979_8296194_8300119_8300265_8302125_8302198_8302683_8302738_8303728_8303810_8305222_8305326_8306522_8306692_8307965
transcript_20596.known	chr16	+	1842	9	FSM	ENSMUSG00000022711.17	ENSMUST00000023396.10	1842	9	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_5	22.2528088114737	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATTGTGGCCGAATCAT	NA	False	NA	17	True	AATAAA	-24	NA	8455537	8475395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
transcript_20599.nnic	chr16	+	1869	8	NIC	ENSMUSG00000022711.17	novel	1842	9	NA	NA	-104	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_2	59.2149319282333	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATTGTGGCCGAATCAT	NA	False	NA	17	True	AATAAA	-24	NA	8455433	8475395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_8455693_8460601_8460714_8464036_8464129_8466511_8466612_8466745_8466822_8469273_8469390_8473414_8473553_8474419
transcript_20600.nic	chr16	+	823	7	ISM	ENSMUSG00000022711.17	ENSMUST00000023396.10	1842	9	52	5859	3	245	5prime_fragment	FALSE	canonical	3	143	junction_5	24.6153745993569	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCTTTATGATTCTGCT	NA	False	NA	NA	False	NA	NA	NA	8455589	8469536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745_8466822_8469273
transcript_20605.known	chr16	+	721	6	FSM	ENSMUSG00000022711.17	ENSMUST00000130885.8	721	6	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_5	21.3953265925061	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGAGGGAATCACGAACGA	NA	False	NA	NA	False	AATAAA	-17	NA	8455586	8466979	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_8455693_8460601_8460714_8463232_8463310_8464036_8464129_8466511_8466612_8466745
transcript_20606.known	chr16	-	2858	4	FSM	ENSMUSG00000008393.10	ENSMUST00000008537.10	2858	4	0	0	0	0	multi-exon	TRUE	canonical	3	300	junction_3	44.5146667465405	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGACTGTAAAAGGTTGTG	NA	False	NA	-11	True	AATAAA	-21	NA	8490019	8476443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_8478968_8481450_8481574_8482118_8482287_8489976
transcript_20609.known	chr16	-	3391	2	FSM	ENSMUSG00000043140.11	ENSMUST00000052505.10	3391	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCAGGGTTTTTTGGGTTT	NA	False	NA	NA	False	NA	NA	NA	8455576	8451092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_8454257_8455349
transcript_20614.known	chr16	-	4745	32	FSM	ENSMUSG00000022710.18	ENSMUST00000160405.8	4745	32	0	0	0	0	multi-exon	FALSE	canonical	2	419	junction_31	128.599831855963	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGCTGTGGAAGCCGAG	NA	False	NA	NA	False	AATAAA	-26	NA	8610172	8507458	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_8508751_8509009_8509101_8509218_8509291_8509419_8509540_8510243_8510344_8510881_8510983_8511565_8511644_8511733_8511843_8512276_8512345_8512894_8513049_8513679_8513781_8514540_8514609_8514690_8514784_8515453_8515560_8515756_8515859_8516315_8516451_8516583_8516715_8517006_8517152_8517909_8518067_8519825_8519936_8521327_8521411_8522791_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8610099
transcript_20620.nic	chr16	-	1380	11	ISM	ENSMUSG00000022710.18	ENSMUST00000160405.8	4745	32	-68	15350	-68	0	5prime_fragment	FALSE	canonical	3	419	junction_10	153.65858257839	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGGAAAGAAAAACAGTA	NA	False	NA	NA	False	NA	NA	NA	8610240	8522808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_-_8522883_8522967_8523049_8523949_8524005_8524462_8524594_8525501_8525611_8526722_8526812_8527902_8528042_8529857_8530057_8534378_8534484_8574679_8574937_8610099
transcript_20621.known	chr16	-	330	1	FSM	ENSMUSG00000068674.4	ENSMUST00000090395.4	330	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAACTAATGGAGAGTAAAT	NA	False	NA	NA	False	NA	NA	NA	8740253	8739923	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_8739900_8740300
transcript_20624.nnic	chr16	+	1158	3	NNC	ENSMUSG00000116469.2	novel	673	3	NA	NA	53003	364	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	3.5	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGGATTCCTGTGTA	6112	False	NA	NA	False	AATAAA	-15	NA	8951011	8955672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_8951217_8953545_8953645_8954818
transcript_20625.nnic	chr16	+	1723	3	NNC	ENSMUSG00000116469.2	novel	673	3	NA	NA	53003	929	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	3.5	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCCTCTCCCTAGTCT	6112	False	NA	6	True	AATAAA	-16	NA	8951011	8956237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_8951217_8953545_8953645_8954818
transcript_20632.nnic	chr16	+	1094	5	Intergenic	novelGene_5	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	18.4255257726883	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAAAATCCTATCTCCTTC	NA	False	NA	NA	False	NA	NA	NA	8970603	9040743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Intergenic_chr16_+_8970858_9010517_9010673_9032429_9032546_9038336_9038565_9040402
transcript_20637.nnic	chr16	+	1195	4	Intergenic	novelGene_6	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	21.1817531537563	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTATCAGAACAAAGATTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	8970677	9039080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Intergenic_chr16_+_8970858_9010517_9010673_9032429_9032546_9038336
transcript_20640.known	chr16	+	550	3	FSM	ENSMUSG00000039209.13	ENSMUST00000121292.8	550	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	241	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTCTGTGTTACAACTT	NA	False	NA	29	True	AATAAA	-29	NA	9988089	9992494	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_9988189_9988278_9988356_9992120
transcript_20641.known	chr16	+	805	3	FSM	ENSMUSG00000039209.13	ENSMUST00000044103.6	805	3	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_1	5	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAATTGCTCTCTGGTCCT	NA	False	NA	68	True	NA	NA	NA	9988091	9992775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_9988189_9988278_9988356_9992144
transcript_20643.nnic	chr16	+	3292	11	NNC	ENSMUSG00000039200.17	novel	2778	11	NA	NA	-28	1	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_10	36.5383360321731	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTTTACTGTCTTTTAT	NA	False	NA	8	True	AATAAA	-16	NA	10010741	10060916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424_10058511_10058730
transcript_20644.known	chr16	+	2778	11	FSM	ENSMUSG00000039200.17	ENSMUST00000044005.14	2778	11	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	27.1632104140877	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTTTACTGTCTTTTA	NA	False	NA	7	True	AATAAA	-15	NA	10010575	10060915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424_10058511_10059409
transcript_20646.nic	chr16	+	2165	11	NIC	ENSMUSG00000039200.17	novel	2778	11	NA	NA	1	961	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	41.4305442880009	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGAGTGGCATTTTTCA	NA	False	NA	9	True	ATTAAA	-14	NA	10010811	10070303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10065308_10065462_10069241
transcript_20647.known	chr16	+	1230	10	FSM	ENSMUSG00000039200.17	ENSMUST00000117220.8	1230	10	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	25.7557377042739	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTCAGAAGCTACAAAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	10010785	10058678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10052181_10052256_10054021_10054084_10055029_10055097_10058424
transcript_2065.nnic	chr1	-	2399	6	NIC	ENSMUSG00000003721.15	novel	2697	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_5	70.4346505634833	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGTCCTTTTTATTC	NA	False	NA	-1	True	ATTAAA	-17	NA	121255522	121232081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247635_121255419
transcript_20651.nnic	chr16	+	1016	7	NNC	ENSMUSG00000039200.17	novel	1048	9	NA	NA	-9	-233	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_6	44.8803966114383	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGACTTTCGTGTTTTGTCTT	NA	False	NA	NA	False	NA	NA	NA	10010801	10031862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516_10030678_10031603
transcript_20652.known	chr16	+	2166	6	FSM	ENSMUSG00000039200.17	ENSMUST00000133674.2	2166	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	27.9928562315459	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAATATTAAAAGGTACT	NA	False	NA	NA	False	NA	NA	NA	10010810	10032095	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_10010890_10019163_10019319_10022467_10022587_10026997_10027133_10028868_10028968_10030516
transcript_20654.known	chr16	-	3440	5	FSM	ENSMUSG00000022505.10	ENSMUST00000078357.5	3440	5	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	14.2894191624432	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAATTGTATGGTGTTTGT	NA	False	NA	-5	True	ATTAAA	-31	NA	10131832	10099612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_10102480_10103318_10103466_10105918_10106025_10110125_10110289_10131675
transcript_20657.known	chr16	-	1803	7	FSM	ENSMUSG00000039179.14	ENSMUST00000043415.13	1803	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	2.40947204913349	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCTTTAGGAAAATGTGAA	NA	False	NA	4	True	AATAAA	-22	NA	10213354	10175811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_10176300_10179121_10179277_10196760_10196984_10200653_10200798_10203926_10203998_10205018_10205103_10212716
transcript_2066.known	chr1	-	2697	6	FSM	ENSMUSG00000003721.15	ENSMUST00000003818.14	2697	6	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_4	17.805617091244	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGTCCTTTTTATTC	NA	False	NA	-1	True	ATTAAA	-17	NA	121255753	121232081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255419
transcript_20660.known	chr16	+	2121	11	FSM	ENSMUSG00000022503.11	ENSMUST00000023146.5	2121	11	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_1	76.2262422004391	430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGCTTTGTCATTCTTTC	NA	False	NA	NA	False	AAGAAA	-25	NA	10229811	10242292	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119_10238211_10238837_10238993_10239090_10239202_10239440_10239544_10240685_10240770_10241104
transcript_20668.known	chr16	+	679	6	FSM	ENSMUSG00000022503.11	ENSMUST00000129280.8	679	6	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_1	72.6151499344317	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGTTTTCAGTGTAGACA	NA	False	NA	NA	False	GATAAA	-17	NA	10229817	10238415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_10229860_10229933_10230039_10231474_10231609_10235524_10235594_10237516_10237550_10238119
transcript_2067.nnic	chr1	-	2440	6	NIC	ENSMUSG00000003721.15	novel	2697	6	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_4	72.0316597059932	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGTCCTTTTTATTC	NA	False	NA	-1	True	ATTAAA	-17	NA	121255528	121232081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247357_121247702_121255419
transcript_20672.known	chr16	+	704	3	FSM	ENSMUSG00000068663.15	ENSMUST00000130148.2	704	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	9	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTGGGGATTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	10363240	10381309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_10363507_10377884_10378014_10381000
transcript_20673.known	chr16	+	3742	2	FSM	ENSMUSG00000037991.10	ENSMUST00000037913.9	3742	2	0	0	0	0	multi-exon	TRUE	canonical	3	158	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATAGTTTGTTCTGGTTT	NA	False	NA	NA	False	NA	NA	NA	10652922	10661102	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_10653255_10657692
transcript_20677.known	chr16	-	2235	4	FSM	ENSMUSG00000022500.16	ENSMUST00000023143.14	2235	4	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_3	22.4548930574657	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTGTCCCCATTCATTCT	NA	False	NA	-11	True	AATAAA	-13	NA	10810985	10777138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_10778916_10781120_10781278_10784288_10784514_10810909
transcript_20680.nnic	chr16	-	419	3	NNC	ENSMUSG00000022500.16	novel	2235	4	NA	NA	9	-7275	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	2	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTGTCAAGGAATTTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	10810976	10791469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_10791638_10793290_10793475_10810909
transcript_20682.known	chr16	-	3825	23	FSM	ENSMUSG00000037965.16	ENSMUST00000037633.16	3825	23	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_12	24.8770530528646	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGGTGTGGTCCTTTCT	NA	False	NA	1	True	AATAAA	-28	NA	10994257	10954455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_10955350_10956884_10957049_10958580_10958715_10959526_10959636_10963043_10963150_10963509_10963644_10964230_10964308_10965132_10965315_10966308_10966410_10967074_10967272_10968458_10968621_10969002_10969190_10969729_10969795_10970922_10971128_10973883_10974165_10974391_10974426_10976417_10976457_10976546_10976628_10976829_10976989_10978867_10979066_10980503_10980544_10982455_10982558_10994083
transcript_20687.known	chr16	-	1945	9	FSM	ENSMUSG00000005846.13	ENSMUST00000119953.2	1945	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	907.175424049836	1023	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGCTGTACTGTTGGTATT	954	False	NA	-3	True	ATTAAA	-25	NA	11021195	11010833	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_11011602_11012323_11012576_11014137_11014261_11014336_11014431_11017248_11017351_11017434_11017584_11019158_11019295_11020181_11020322_11021014
transcript_20699.known	chr16	+	2942	2	FSM	ENSMUSG00000097537.3	ENSMUST00000181526.3	2942	2	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGGATTTGTTTGTTTTT	9699	False	NA	NA	False	AATAAA	-29	NA	11021229	11043660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_11021612_11041100
transcript_20701.known	chr16	-	2663	4	FSM	ENSMUSG00000065979.13	ENSMUST00000096272.11	2663	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_3	6.59966329107444	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAATAAAAAACAA	NA	False	NA	-40	True	NA	NA	NA	11727287	11621584	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_11623448_11646038_11646462_11705441_11705661_11727129
transcript_20704.known	chr16	+	3480	11	FSM	ENSMUSG00000022545.14	ENSMUST00000023206.14	3480	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	21.466252583998	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGGTTTCTCAGTGTTT	NA	False	NA	11	True	AATAAA	-14	NA	12927547	12966598	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_12928006_12929594_12929776_12939859_12940056_12941197_12941406_12943114_12943296_12944258_12944388_12945418_12945530_12947997_12948599_12950721_12950815_12962264_12962378_12965389
transcript_20706.nic	chr16	+	1497	7	ISM	ENSMUSG00000009569.15	ENSMUST00000009713.14	5815	17	13	29883	-12	-29883	5prime_fragment	FALSE	canonical	3	39	junction_6	10.2374584519575	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCGTTGAGAGGAGGGTCT	NA	False	NA	NA	False	AATAAA	-24	NA	13074357	13203044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_+_13074419_13082942_13083004_13144245_13144436_13196127_13196194_13197703_13197760_13199391_13199468_13202057
transcript_20708.known	chr16	-	2906	24	FSM	ENSMUSG00000022685.10	ENSMUST00000058884.10	2906	24	0	0	0	0	multi-exon	FALSE	canonical	1	121	junction_21	52.0035988284976	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCCTTTAACTGTTCTT	NA	False	NA	-7	True	ATTAAA	-16	NA	13486034	13355823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483765_13483846_13485397_13485476_13485874
transcript_20709.nnic	chr16	-	2856	24	NNC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_23	86.4421963402628	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCCTTTAACTGTTCTT	NA	False	NA	-7	True	ATTAAA	-16	NA	13486022	13355823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_13356767_13358918_13359113_13384433_13384603_13420891_13420967_13424011_13424099_13425114_13425171_13443372_13443443_13443977_13444089_13446237_13446314_13447446_13447490_13449393_13449438_13458116_13458195_13465106_13465164_13466282_13466364_13468498_13468542_13469661_13469701_13470508_13470575_13472312_13472458_13474779_13474841_13482519_13482602_13482684_13482753_13483765_13483846_13485397_13485476_13485912
transcript_20716.nnic	chr16	-	1294	3	NNC	ENSMUSG00000022685.10	novel	2906	24	NA	NA	117834	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	188.5	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGCCTTTAACTGTTCTT	NA	False	NA	-7	True	ATTAAA	-16	NA	13368012	13355823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_13356767_13358918_13359113_13367855
transcript_20717.nnic	chr16	+	2173	9	NNC	ENSMUSG00000022684.16	novel	3003	8	NA	NA	6	-886	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	40.5383691704538	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	13489727	13520580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13508121_13508194_13510296_13510442_13515196_13515371_13516736_13516940_13519928
transcript_2072.known	chr1	-	674	5	FSM	ENSMUSG00000003721.15	ENSMUST00000186915.2	674	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	81.0524521529115	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCGCTACATGAAAGATATG	NA	False	NA	NA	False	AATAAA	-14	NA	121255448	121233423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121255419
transcript_20720.known	chr16	+	3003	8	FSM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_1	10.7760126660835	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTTATAGAGAAATCTGAT	NA	False	NA	NA	False	AATAAA	-24	NA	13489721	13521476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736_13516940_13519928
transcript_20725.nic	chr16	+	1575	7	ISM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	94	4323	2	0	5prime_fragment	FALSE	canonical	3	82	junction_1	11.6105794668292	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAGTGAATAAAAATA	NA	False	NA	NA	False	NA	NA	NA	13489815	13517153	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619_13506790_13510296_13510442_13515196_13515371_13516736
transcript_20728.nic	chr16	+	1819	4	ISM	ENSMUSG00000022684.16	ENSMUST00000023365.13	3003	8	6	13795	6	1845	5prime_fragment	FALSE	canonical	3	82	junction_1	10.3708994574027	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAAAGAAAGTAACATT	NA	False	NA	NA	False	NA	NA	NA	13489727	13507681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_+_13489943_13502925_13503263_13505254_13505460_13506619
transcript_20729.known	chr16	+	1611	2	FSM	ENSMUSG00000079737.5	ENSMUST00000035426.7	1611	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGTACTTTGGTATCT	NA	False	NA	NA	False	ATTAAA	-32	NA	13489883	13496249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_13489943_13494697
transcript_20730.known	chr16	+	2121	1	FSM	ENSMUSG00000022684.16	ENSMUST00000230905.2	2121	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAAAAAAACAC	NA	False	NA	NA	False	NA	NA	NA	13489850	13491971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_13489800_13492000
transcript_20731.nnic	chr16	-	1023	4	NIC	ENSMUSG00000022683.14	novel	1423	4	NA	NA	-39	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_3	22.69116323349	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCCTTGTGTAAGAGGTAA	NA	False	NA	-2	True	AATAAA	-18	NA	13548622	13532922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_13533461_13542972_13543080_13545826_13545978_13548395
transcript_20732.known	chr16	-	301	2	FSM	ENSMUSG00000115907.2	ENSMUST00000229709.2	301	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCCATTAAAAATTTGAAC	NA	False	NA	NA	False	NA	NA	NA	13557068	13555715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_13555865_13556916
transcript_20736.known	chr16	+	3582	18	FSM	ENSMUSG00000022682.9	ENSMUST00000023363.8	3582	18	0	0	0	0	multi-exon	FALSE	canonical	3	873	junction_12	92.1558406284578	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTACTGTGTTGAATTTTA	NA	False	NA	27	True	AATAAA	-20	NA	13598576	13632703	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_13598704_13599856_13599963_13601936_13601994_13606641_13606732_13606823_13606954_13607396_13607457_13608484_13608549_13609783_13609854_13610811_13610911_13613848_13613942_13616475_13616615_13617749_13617881_13622812_13622944_13624422_13624608_13626845_13626955_13628367_13628521_13629385_13629474_13630953
transcript_2074.nic	chr1	-	2180	4	NIC	ENSMUSG00000003721.15	novel	2697	6	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_2	80.4998274670339	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTAGTCCTTTTTATTC	NA	False	NA	-1	True	ATTAAA	-17	NA	121255528	121232081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_121233677_121234592_121234693_121247325_121247702_121255419
transcript_20741.known	chr16	-	4228	24	FSM	ENSMUSG00000022680.15	ENSMUST00000023361.12	4228	24	0	0	0	0	multi-exon	TRUE	canonical	3	113	junction_1	25.0911382243075	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTTCTAGCTTCTACC	9988	False	NA	NA	False	NA	NA	NA	13720991	13651011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_13652711_13654249_13654480_13654906_13655012_13655959_13656057_13656165_13656259_13657095_13657218_13657500_13657620_13658150_13658323_13661634_13661741_13663198_13663288_13665589_13665654_13672258_13672310_13675240_13675367_13676720_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
transcript_20744.nic	chr16	-	1254	11	ISM	ENSMUSG00000022680.15	ENSMUST00000115802.2	2466	14	0	9485	0	803	5prime_fragment	FALSE	canonical	3	195	junction_3	12.7342059037853	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTTGCCTTTCTTAAA	9984	False	NA	NA	False	AATAAA	-25	NA	13720995	13676625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_-_13676823_13676973_13677023_13677817_13677903_13687666_13687746_13690318_13690388_13693841_13694032_13697289_13697437_13699741_13699823_13702429_13702496_13705560_13705635_13720778
transcript_20745.nnic	chr16	+	1082	10	NNC	ENSMUSG00000022681.16	novel	1175	10	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_2	214.455958240128	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTAGATGACTTTTTAC	NA	False	NA	NA	False	AATAAA	-23	NA	13637126	13653315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_13637301_13644746_13644769_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
transcript_20746.known	chr16	+	1175	10	FSM	ENSMUSG00000022681.16	ENSMUST00000023362.15	1175	10	0	0	0	0	multi-exon	FALSE	canonical	3	538	junction_1	69.8729004852541	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTAGATGACTTTTTAC	NA	False	NA	NA	False	AATAAA	-23	NA	13637114	13653315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
transcript_2075.known	chr1	-	1204	6	FSM	ENSMUSG00000003721.15	ENSMUST00000160968.8	1204	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	77.0817747590181	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGCTAAAAACAAAGCAAAT	NA	False	NA	NA	False	NA	NA	NA	121255475	121233266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_121233677_121234592_121234693_121234868_121235036_121239929_121240055_121247325_121247702_121255449
transcript_20753.known	chr16	+	984	9	FSM	ENSMUSG00000022681.16	ENSMUST00000115805.3	984	9	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_8	226.530902969109	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTAGATGACTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	13637188	13653312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652998
transcript_20754.nnic	chr16	+	1109	9	NIC	ENSMUSG00000022681.16	novel	1175	10	NA	NA	12	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_5	218.732963622313	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTAGATGACTTTTTAC	NA	False	NA	NA	False	AATAAA	-23	NA	13637126	13653315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_13637301_13644746_13644850_13644923_13644990_13645251_13645361_13646868_13646943_13649470_13649525_13650200_13650299_13652544_13652659_13652998
transcript_20756.known	chr16	+	1014	9	FSM	ENSMUSG00000022681.16	ENSMUST00000136618.8	1014	9	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	197.353743313878	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTAGATGACTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	13637169	13653312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_13637301_13644923_13644990_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
transcript_20759.nic	chr16	+	959	8	NIC	ENSMUSG00000022681.16	novel	1175	10	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	230.175975270741	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTTAGATGACTTTTTAC	NA	False	NA	NA	False	AATAAA	-23	NA	13637161	13653315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_13637301_13645251_13645361_13646868_13646943_13648981_13649036_13649470_13649525_13650200_13650299_13652544_13652659_13652998
transcript_2076.known	chr1	+	7274	24	FSM	ENSMUSG00000026339.19	ENSMUST00000036025.16	7274	24	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_5	11.149101195474	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGTTTCATTTAAGAATA	NA	False	NA	10	True	NA	NA	NA	121358777	121434189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_121358987_121362261_121362376_121365524_121365620_121369510_121369623_121373368_121373468_121375952_121376010_121383799_121383901_121389192_121389230_121389615_121389709_121389961_121390013_121390827_121390915_121403760_121403878_121405563_121405627_121408543_121408618_121409724_121409807_121410329_121410396_121411015_121411070_121414331_121414395_121418850_121418960_121420633_121420717_121422124_121422163_121424712_121424798_121426936_121427051_121428918
transcript_20768.known	chr16	+	768	5	FSM	ENSMUSG00000022679.14	ENSMUST00000124947.8	768	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	88.2439799646412	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTGATTATCTTTTGTTC	470	False	NA	NA	False	NA	NA	NA	13758507	13765160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_13758576_13759983_13760038_13762529_13762601_13764421_13764452_13764615
transcript_20769.known	chr16	+	2315	5	FSM	ENSMUSG00000022679.14	ENSMUST00000148966.2	2315	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	78.6431815226215	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGATTTGGGTATTGTCA	521	False	NA	9	True	NA	NA	NA	13758558	13766446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_13758888_13759983_13760038_13762529_13762601_13764421_13764452_13764615
transcript_2077.known	chr1	+	762	5	FSM	ENSMUSG00000026339.19	ENSMUST00000128924.2	762	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	38.3861954353385	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTTTTGAGGATGTGAG	NA	False	NA	NA	False	AATAAA	-16	NA	121358836	121371751	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_121358987_121362261_121362376_121365524_121365620_121369510_121369623_121371460
transcript_20775.known	chr16	+	580	4	FSM	ENSMUSG00000022679.14	ENSMUST00000143697.8	580	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	74.5311269798659	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCTTCGCAGGAAGGAGG	528	False	NA	NA	False	NA	NA	NA	13758565	13764743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_13758888_13762529_13762601_13764392_13764452_13764615
transcript_20778.known	chr16	+	3087	4	FSM	ENSMUSG00000022679.14	ENSMUST00000023360.14	3087	4	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	20.3960780543711	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCAGAACTCTCAGCTCC	491	False	NA	NA	False	NA	NA	NA	13758528	13767242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_13758888_13762529_13762601_13764421_13764452_13764615
transcript_2078.known	chr1	+	1438	6	FSM	ENSMUSG00000026339.19	ENSMUST00000156459.8	1438	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_5	13.4669966956259	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACATCTGTTTTTGATTTT	NA	False	NA	NA	False	ATTAAA	-13	NA	121358803	121376787	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_121358987_121362261_121362376_121365524_121365620_121369510_121369623_121373368_121373468_121375952
transcript_20782.known	chr16	+	2155	4	FSM	ENSMUSG00000022679.14	ENSMUST00000141971.8	2155	4	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	85.9353762363841	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAAGATTGATGCTGATT	456	False	NA	NA	False	NA	NA	NA	13758493	13766587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_13758576_13762529_13762601_13764421_13764452_13764615
transcript_20785.known	chr16	+	2394	6	FSM	ENSMUSG00000044117.13	ENSMUST00000056521.12	2394	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	4.9152822909778	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAATTTTCAAGATATTTG	NA	False	NA	NA	False	NA	NA	NA	13804467	13919364	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_13804758_13867246_13867371_13906809_13906884_13911752_13911868_13913767_13913851_13917656
transcript_20787.nic	chr16	+	1431	5	ISM	ENSMUSG00000044117.13	ENSMUST00000056521.12	2394	6	-5	4774	-5	739	5prime_fragment	TRUE	canonical	3	47	junction_1	5.40254569624358	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTATGCACC	NA	False	NA	NA	False	NA	NA	NA	13804462	13914590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_+_13804758_13867246_13867371_13906809_13906884_13911752_13911868_13913767
transcript_2079.known	chr1	+	2338	24	FSM	ENSMUSG00000026339.19	ENSMUST00000112621.2	2338	24	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_9	17.1308761805856	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAAGTATTGAGCAACTGC	NA	False	NA	NA	False	AATAAA	-14	NA	121358838	121429317	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_121358987_121362261_121362376_121365524_121365620_121369510_121369623_121373368_121373468_121375952_121376010_121383799_121383901_121389192_121389230_121389615_121389709_121389964_121390013_121390827_121390915_121403760_121403878_121405563_121405627_121408543_121408618_121409724_121409807_121410329_121410396_121411015_121411070_121414331_121414395_121418850_121418960_121420633_121420717_121422124_121422163_121424712_121424798_121426936_121427051_121428918
transcript_20792.known	chr16	+	2335	9	FSM	ENSMUSG00000022678.17	ENSMUST00000115795.9	2335	9	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_8	91.5818452260054	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAAAAGTGTTTTGTG	NA	False	NA	86	True	AATAAA	-8	NA	13981208	14010782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009453
transcript_20795.known	chr16	+	2287	9	FSM	ENSMUSG00000022678.17	ENSMUST00000023359.13	2287	9	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_8	30.8696857774743	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTGTGCATTGTATAT	NA	False	NA	96	True	AATAAA	-18	NA	13981138	14010792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009581
transcript_20797.known	chr16	+	1551	9	FSM	ENSMUSG00000022678.17	ENSMUST00000117958.8	1551	9	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_8	96.6681662958391	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGAAATCCCTGCTCAAT	NA	False	NA	-4	True	AATAAA	-9	NA	13981150	14010692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_13993154_13993304_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14010205
transcript_20799.known	chr16	+	2105	8	FSM	ENSMUSG00000022678.17	ENSMUST00000132316.8	2105	8	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	103.03773828168	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAAAAAGTGTTTTGTG	NA	False	NA	86	True	AATAAA	-8	NA	13981161	14010782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_13981233_13987315_13987440_13988201_13988356_14001339_14001477_14003557_14003738_14006176_14006269_14007950_14008097_14009581
transcript_20801.known	chr16	-	6549	41	FSM	ENSMUSG00000018830.11	ENSMUST00000090287.5	6549	41	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.611861912526021	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGAAAGGAGTTGGCTCTT	832	False	NA	NA	False	AATAAA	-14	NA	14109236	14012398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_14013049_14018558_14018732_14018832_14018942_14019926_14020136_14020976_14021101_14022188_14022278_14022494_14022624_14022970_14023133_14023364_14023578_14023774_14023988_14025403_14025653_14025852_14026006_14026095_14026201_14027374_14027582_14029089_14029235_14030381_14030595_14033599_14033772_14035805_14035930_14036703_14036842_14037723_14037931_14038018_14038151_14039607_14039717_14041359_14041521_14041679_14041750_14041841_14041964_14044322_14044517_14046599_14046715_14048556_14048731_14050388_14050563_14051403_14051557_14052216_14052336_14054232_14054329_14057259_14057404_14062668_14062768_14063364_14063429_14064590_14064684_14068385_14068489_14074348_14074377_14086972_14087130_14095415_14095777_14109139
transcript_20807.known	chr16	-	1465	5	FSM	ENSMUSG00000022677.16	ENSMUST00000023357.14	1465	5	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_3	56.7384349449295	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135239	14117107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_14118074_14122317_14122452_14128910_14128996_14131679_14131878_14135157
transcript_20811.nnic	chr16	-	1346	4	NNC	ENSMUSG00000022677.16	novel	1465	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	179.58718093326	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135252	14117107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_14118074_14122317_14122405_14131679_14131878_14135157
transcript_20812.nnic	chr16	-	1253	4	NIC	ENSMUSG00000022677.16	novel	1465	5	NA	NA	14	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	177.216126680264	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135225	14117107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_14118074_14122317_14122452_14128910_14128996_14135157
transcript_20813.nnic	chr16	-	1393	4	NIC	ENSMUSG00000022677.16	novel	1465	5	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	20	junction_2	175.075856575244	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135252	14117107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_14118074_14122317_14122452_14131679_14131878_14135157
transcript_20816.nnic	chr16	-	1121	3	NNC	ENSMUSG00000022677.16	novel	1465	5	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_2	214.5	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135225	14117107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_14118074_14122317_14122405_14135157
transcript_20817.known	chr16	-	1147	3	FSM	ENSMUSG00000022677.16	ENSMUST00000230495.2	1147	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	185.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTTGCTTATGGTCATG	NA	False	NA	-8	True	NA	NA	NA	14135208	14117111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_14118074_14122317_14122452_14135157
transcript_20821.known	chr16	-	807	2	FSM	ENSMUSG00000022677.16	ENSMUST00000148278.2	807	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGTCCAGCCCACAGTGG	NA	False	NA	NA	False	NA	NA	NA	14135196	14117305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_14118074_14135157
transcript_20823.known	chr16	-	1414	5	FSM	ENSMUSG00000022677.16	ENSMUST00000120707.2	1414	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	160.526282894733	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTATGGTCATGGTCT	NA	False	NA	-4	True	NA	NA	NA	14135211	14117107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_14118074_14122317_14122429_14128910_14128996_14131679_14131878_14135157
transcript_20824.known	chr16	-	609	5	FSM	ENSMUSG00000022674.16	ENSMUST00000096234.4	609	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	568.153808400507	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAATAAGTAAAAGAATTGCA	NA	False	NA	NA	False	ATTAAA	-24	NA	15412354	15374172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_15374408_15394878_15395005_15398922_15399072_15411554_15411623_15412323
transcript_20826.known	chr16	-	893	4	FSM	ENSMUSG00000022674.16	ENSMUST00000118236.8	893	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	50.6776303927307	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTGTTGGGGTTTTGAA	NA	False	NA	NA	False	NA	NA	NA	15412336	15373744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_15374408_15398922_15399072_15411554_15411623_15412323
transcript_20827.known	chr16	-	4207	4	FSM	ENSMUSG00000022674.16	ENSMUST00000115777.10	4207	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	627.165050046636	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATTTTGTGTGTGCCTGTG	NA	False	NA	-4	True	AATAAA	-17	NA	15412388	15370540	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_15374408_15394878_15395005_15398922_15399072_15412323
transcript_20828.known	chr16	-	1236	3	FSM	ENSMUSG00000022674.16	ENSMUST00000115776.2	1236	3	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	698.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGAGACTATCAAAGACTT	NA	False	NA	NA	False	AAGAAA	-4	NA	15412371	15373368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_15374408_15398922_15399072_15412323
transcript_2083.known	chr1	-	2258	13	FSM	ENSMUSG00000001674.12	ENSMUST00000001724.12	2258	13	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_12	122.318232492135	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTATACCTTTCCCT	NA	False	NA	-16	True	CATAAA	-23	NA	121495718	121481563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_121481868_121482944_121483123_121483419_121483477_121485133_121485248_121486139_121486293_121486894_121487057_121487860_121488001_121489009_121489325_121489418_121489520_121489787_121489924_121492221_121492333_121493609_121493898_121495519
transcript_20831.known	chr16	-	3589	16	FSM	ENSMUSG00000022673.6	ENSMUST00000023353.4	3589	16	0	0	0	0	multi-exon	TRUE	canonical	3	1276	junction_6	130.715909088714	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGAAGTAGGCATTAATG	NA	False	NA	NA	False	AATAAA	-20	NA	15455264	15441760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_15442634_15443425_15443560_15443899_15444129_15445512_15445721_15446456_15446585_15447165_15447532_15448124_15448385_15449562_15449684_15449980_15450202_15452302_15452442_15452912_15453009_15453093_15453190_15453856_15453959_15454049_15454214_15454484_15454647_15454974
transcript_20836.nnic	chr16	-	1055	4	NNC	ENSMUSG00000022671.14	novel	758	4	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_3	257.016644510731	188	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTATGTGGAGTCCTGGT	NA	False	NA	-4	True	ATTAAA	-20	NA	15681256	15666306	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_15666594_15680261_15680408_15680611_15680797_15680819
transcript_20838.known	chr16	-	758	4	FSM	ENSMUSG00000022671.14	ENSMUST00000117136.2	758	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_3	237.265439727089	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGAGTTCTATGTGGAG	NA	False	NA	-11	True	ATTAAA	-13	NA	15681233	15666313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_15666594_15680261_15680408_15680611_15680797_15681086
transcript_20840.known	chr16	-	1066	4	FSM	ENSMUSG00000022671.14	ENSMUST00000229680.2	1066	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	282.609664063744	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTCTATGTGGAGTCCT	NA	False	NA	-7	True	ATTAAA	-17	NA	15681174	15666309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_15666594_15678561_15678635_15680261_15680408_15680611
transcript_20841.known	chr16	-	1035	3	FSM	ENSMUSG00000022671.14	ENSMUST00000023351.11	1035	3	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_1	21	472	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTGGAGTCCTGGTTT	NA	False	NA	-2	True	ATTAAA	-22	NA	15681211	15666304	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_15666594_15680261_15680408_15680611
transcript_20842.known	chr16	-	3282	20	FSM	ENSMUSG00000041974.11	ENSMUST00000040248.9	3282	20	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_3	29.6569490345649	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGGTTTTAGTGTT	1947	False	NA	0	True	AATAAA	-18	NA	15964715	15707087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_15707650_15713006_15713061_15713389_15713505_15715087_15715182_15720772_15720920_15721920_15722126_15730382_15730443_15730532_15730674_15733163_15733252_15754416_15754558_15784465_15784717_15786391_15786582_15855353_15855574_15865867_15865969_15871129_15871381_15932690_15932846_15936670_15936848_15957869_15957937_15958571_15958728_15964608
transcript_20845.known	chr16	+	1574	5	FSM	ENSMUSG00000022792.17	ENSMUST00000059955.15	1574	5	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_2	32.9952648117878	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACAAGAACAATCCTTGCT	9519	False	NA	24	True	AATAAA	-29	NA	16120841	16127504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_16121612_16122399_16122568_16124326_16124483_16125073_16125245_16127195
transcript_20846.known	chr16	-	3893	20	FSM	ENSMUSG00000022789.16	ENSMUST00000115749.3	3893	20	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_19	330.475926430562	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGTGAATTCTTTCTGA	NA	False	NA	-15	True	AATAAA	-21	NA	16176397	16130101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176362
transcript_20847.nic	chr16	-	4129	20	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-75	0	combination_of_known_junctions	FALSE	canonical	3	417	junction_5	244.836267297011	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGTGAATTCTTTCTGA	NA	False	NA	-15	True	AATAAA	-21	NA	16176898	16130101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_20850.nic	chr16	-	2984	20	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-75	0	combination_of_known_junctions	FALSE	canonical	3	417	junction_5	244.836267297011	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGAAAATTTAATGACTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16176898	16131246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_20851.nic	chr16	-	2533	20	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-75	153	combination_of_known_junctions	FALSE	canonical	3	417	junction_5	244.836267297011	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACATGTTTAATTCACATT	NA	False	NA	-15	True	AAAACA	-3	NA	16176898	16131697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_20853.nic	chr16	-	4051	19	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-75	0	combination_of_known_junctions	FALSE	canonical	3	332	junction_5	248.085384544699	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGTGAATTCTTTCTGA	NA	False	NA	-15	True	AATAAA	-21	NA	16176898	16130101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_20855.nnic	chr16	-	4096	19	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-75	0	combination_of_known_splicesites	FALSE	canonical	3	286	junction_4	248.941642474747	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGTGAATTCTTTCTGA	NA	False	NA	-15	True	AATAAA	-21	NA	16176898	16130101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_20856.nic	chr16	-	2906	19	NIC	ENSMUSG00000022789.16	novel	2151	19	NA	NA	-75	0	combination_of_known_junctions	FALSE	canonical	3	332	junction_5	248.085384544699	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGAAAATTTAATGACTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16176898	16131246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_20858.nnic	chr16	-	2951	19	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-75	0	combination_of_known_splicesites	FALSE	canonical	3	286	junction_4	248.941642474747	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGAAAATTTAATGACTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16176898	16131246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_20860.known	chr16	-	2151	19	FSM	ENSMUSG00000022789.16	ENSMUST00000230980.2	2151	19	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_17	350.006349148761	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGAACTGTTTGATATCCA	NA	False	NA	NA	False	NA	NA	NA	16176729	16131850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163843_16164010_16176627
transcript_20861.nic	chr16	-	2455	19	NIC	ENSMUSG00000022789.16	novel	2151	19	NA	NA	-75	153	combination_of_known_junctions	FALSE	canonical	3	332	junction_5	248.085384544699	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACATGTTTAATTCACATT	NA	False	NA	-15	True	AAAACA	-3	NA	16176898	16131697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136308_16136342_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_20862.nnic	chr16	-	2500	19	NIC	ENSMUSG00000022789.16	novel	3893	20	NA	NA	-75	153	combination_of_known_splicesites	FALSE	canonical	3	286	junction_4	248.941642474747	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACATGTTTAATTCACATT	NA	False	NA	-15	True	AAAACA	-3	NA	16176898	16131697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16136627_16136706_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_20864.known	chr16	-	3951	18	FSM	ENSMUSG00000022789.16	ENSMUST00000023477.15	3951	18	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_4	261.707977990631	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTCTTTCTGATGTGCTTC	NA	False	NA	-7	True	AATAAA	-29	NA	16176823	16130093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_16131908_16132127_16132288_16134197_16134308_16134465_16134643_16137315_16137373_16139447_16139541_16141193_16141284_16141485_16141642_16141838_16141960_16147666_16147874_16149864_16149997_16151692_16151814_16154716_16154880_16156456_16156544_16158859_16158932_16159285_16159333_16163861_16164010_16176627
transcript_2087.nic	chr1	-	467	2	ISM	ENSMUSG00000001674.12	ENSMUST00000001724.12	2258	13	-18	12084	-18	-1323	5prime_fragment	FALSE	canonical	3	390	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAAAAGAGGAAAATGG	NA	False	NA	NA	False	AGTAAA	-10	NA	121495736	121493647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_121493898_121495519
transcript_20870.nic	chr16	-	385	2	ISM	ENSMUSG00000022789.16	ENSMUST00000230038.2	1074	6	-83	9548	-75	-9548	5prime_fragment	FALSE	canonical	3	1358	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGATAAAAGAAAAACAAC	NA	False	NA	NA	False	NA	NA	NA	16176898	16163895	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_-_16164010_16176627
transcript_20871.known	chr16	-	2416	11	FSM	ENSMUSG00000022783.12	ENSMUST00000023468.6	2416	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.24722050542442	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGAATGGTCCCTTTTGCT	NA	False	NA	NA	False	AATAAA	-16	NA	16647177	16570879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_16571742_16580885_16581032_16584832_16584950_16595186_16595379_16598484_16598638_16599608_16599783_16601598_16601805_16605078_16605263_16610360_16610528_16646883_16646980_16647058
transcript_20872.known	chr16	+	2950	19	FSM	ENSMUSG00000022779.17	ENSMUST00000232581.2	2950	19	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	102.489023802552	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAGCCTGGGACCTTT	NA	False	NA	NA	False	ATTAAA	-27	NA	16688620	16710849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_16688694_16692935_16693020_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
transcript_20875.nic	chr16	+	2942	18	NIC	ENSMUSG00000022779.17	novel	2950	19	NA	NA	-55	0	combination_of_known_junctions	TRUE	canonical	3	287	junction_1	39.4304608859032	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAGAGCCTGGGACCTTT	NA	False	NA	NA	False	ATTAAA	-27	NA	16688544	16710849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_16688694_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
transcript_20876.known	chr16	+	3073	18	FSM	ENSMUSG00000022779.17	ENSMUST00000023465.16	3073	18	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	94.325542449951	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTGGGACCTTTTACTG	NA	False	NA	NA	False	ATTAAA	-32	NA	16688644	16710854	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_16688920_16695695_16695881_16696820_16696953_16697182_16697290_16698467_16698543_16700364_16700562_16701270_16701428_16702102_16702217_16703698_16703790_16704468_16704624_16704743_16704850_16705440_16705588_16705695_16705870_16707346_16707476_16707975_16708126_16708445_16708547_16709218_16709421_16710278
transcript_20881.known	chr16	-	406	3	FSM	ENSMUSG00000059305.13	ENSMUST00000231345.2	406	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCGCCTCTCCTGTACC	NA	False	NA	NA	False	NA	NA	NA	16688707	16686782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_16686843_16687136_16687327_16688551
transcript_20882.known	chr16	-	415	2	FSM	ENSMUSG00000059305.13	ENSMUST00000232670.2	415	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGAACTGCAGCCTGAGG	NA	False	NA	NA	False	NA	NA	NA	16688707	16686583	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_16686843_16688551
transcript_20883.known	chr16	-	766	2	FSM	ENSMUSG00000059305.13	ENSMUST00000075017.5	766	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTGGTCTGGCTGGTTTG	NA	False	NA	-1	True	ATTAAA	-14	NA	16687119	16686266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_16686843_16686929
transcript_20884.known	chr16	+	2390	9	FSM	ENSMUSG00000063358.18	ENSMUST00000232611.2	2390	9	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_8	172.340097989412	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTGCTCTGTTGCCAA	NA	False	NA	NA	False	AATAAA	-23	NA	16801245	16862613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_16801604_16833761_16833945_16836149_16836340_16841315_16841433_16843889_16844005_16844221_16844354_16853305_16853416_16856177_16856299_16861549
transcript_20885.known	chr16	+	1747	8	FSM	ENSMUSG00000063358.18	ENSMUST00000115731.10	1747	8	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_5	32.3728281124773	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAACATTTAAAAATA	NA	False	NA	NA	False	AATATA	-5	NA	16801430	16856904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_16801604_16833761_16833945_16836149_16836340_16841315_16841433_16843889_16844005_16844221_16844354_16853305_16853416_16856177
transcript_20887.known	chr16	-	2333	21	FSM	ENSMUSG00000022771.18	ENSMUST00000023455.14	2333	21	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	124.441592725262	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCGTTCATGACCTGGTA	NA	False	NA	NA	False	AATAAA	-19	NA	16929121	16904418	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_16905078_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
transcript_20888.known	chr16	-	2190	21	FSM	ENSMUSG00000022771.18	ENSMUST00000164458.10	2190	21	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	166.780814244325	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCGTTCATGACCTGGT	NA	False	NA	NA	False	AATAAA	-18	NA	16929077	16904419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_16904980_16906608_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
transcript_20896.known	chr16	-	3088	20	FSM	ENSMUSG00000022771.18	ENSMUST00000231712.2	3088	20	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_7	49.1072657119735	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAGAAAAAT	NA	False	NA	NA	False	AGTAAA	-40	NA	16929106	16905179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_16906731_16907008_16907146_16907291_16907355_16907444_16907518_16907965_16908023_16909038_16909157_16909719_16909754_16910078_16910169_16910548_16910656_16910874_16910951_16912746_16912908_16913868_16913945_16914568_16914659_16915219_16915312_16918119_16918172_16921439_16921492_16923856_16923920_16925042_16925089_16927508_16927559_16929006
transcript_2090.known	chr1	-	2554	13	FSM	ENSMUSG00000026341.17	ENSMUST00000027579.17	2554	13	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_12	606.954190107366	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATGGTTTTTCTTCGTGC	NA	False	NA	-3	True	AATAAA	-21	NA	125363464	125320641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021_125363195_125363386
transcript_20908.known	chr16	-	1266	8	FSM	ENSMUSG00000049916.13	ENSMUST00000093336.8	1266	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_7	117.062516003464	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	16942970	16931261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16941375_16941519_16942853
transcript_20911.nic	chr16	-	1131	7	NIC	ENSMUSG00000049916.13	novel	1266	8	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_6	108.073149096136	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	16939652	16931261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16939527
transcript_20912.known	chr16	-	1156	7	FSM	ENSMUSG00000049916.13	ENSMUST00000231681.2	1156	7	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_4	26.8824602048746	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTGTTGTATGTCCTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	16943004	16931262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16942853
transcript_20913.nnic	chr16	-	1132	7	NNC	ENSMUSG00000049916.13	novel	1156	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_6	94.3705756873166	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	16943004	16931261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16938944_16939159_16939416_16942878
transcript_20921.nic	chr16	-	1413	6	NIC	ENSMUSG00000049916.13	novel	1266	8	NA	NA	-13	0	intron_retention	FALSE	canonical	3	255	junction_4	29.3011945148999	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTTGTATGTCCTCTCT	NA	False	NA	NA	False	AATAAA	-18	NA	16943044	16931261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_16931491_16935343_16935449_16935657_16935729_16936155_16936377_16938819_16939416_16942853
transcript_20925.known	chr16	-	1108	3	FSM	ENSMUSG00000022769.10	ENSMUST00000023453.10	1108	3	0	0	0	0	multi-exon	FALSE	canonical	2	125	junction_1	37.5	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGAGTGCATGAGATGTG	NA	False	NA	-10	True	AATAAA	-18	NA	16950247	16948001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_16948653_16949460_16949658_16949987
transcript_20927.known	chr16	+	1297	5	FSM	ENSMUSG00000041774.17	ENSMUST00000069064.7	1297	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	15.4171171105366	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGGTTTATAAAGTG	NA	False	NA	12	True	AATAAA	-16	NA	16964842	16966710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_16965011_16965096_16965257_16965461_16965562_16965660_16965839_16966019
transcript_20935.known	chr16	-	2609	4	FSM	ENSMUSG00000038965.18	ENSMUST00000090192.12	2609	4	0	0	0	0	multi-exon	FALSE	canonical	3	1494	junction_3	290.114153777823	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGGGTGTATGGGTTTCT	NA	False	NA	-1	True	AATAAA	-18	NA	17019356	16969878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_16972147_16977853_16978041_16994275_16994372_17019298
transcript_20938.known	chr16	+	1580	3	FSM	ENSMUSG00000041774.17	ENSMUST00000232344.2	1580	3	0	0	0	0	multi-exon	TRUE	canonical	3	101	junction_2	5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGCTGGTTTATAAAGTG	NA	False	NA	12	True	AATAAA	-16	NA	16964839	16966710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_16965011_16965096_16965257_16965461
transcript_20939.known	chr16	-	650	3	FSM	ENSMUSG00000038965.18	ENSMUST00000231643.2	650	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	1084	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAAATTTACTCAAAGTTGC	NA	False	NA	50	True	NA	NA	NA	17019334	16971719	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_16972147_16977853_16978041_17019298
transcript_2094.known	chr1	-	2565	12	FSM	ENSMUSG00000026341.17	ENSMUST00000178474.8	2565	12	0	0	0	0	multi-exon	FALSE	canonical	3	2308	junction_6	123.717286351378	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGATGGTTTTTCTTCGTG	NA	False	NA	-4	True	AATAAA	-20	NA	125363284	125320642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_125321828_125322804_125322889_125324843_125324970_125325188_125325282_125331129_125331304_125333581_125333726_125335028_125335137_125336256_125336353_125339000_125339112_125343992_125344118_125345985_125346042_125363021
transcript_20946.known	chr16	+	1627	8	FSM	ENSMUSG00000055692.22	ENSMUST00000232092.2	1627	8	0	0	0	0	multi-exon	TRUE	canonical	3	181	junction_2	39.2189042297154	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094172	17096525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_17094333_17094497_17094622_17094700_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
transcript_20947.known	chr16	+	1503	6	FSM	ENSMUSG00000055692.22	ENSMUST00000231322.2	1503	6	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_4	34.92506263416	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGTGTGGGGTTTCATC	NA	False	NA	38	True	AATAAA	-23	NA	17094540	17096525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_17095115_17095205_17095266_17095391_17095457_17095532_17095606_17095714_17095756_17095835
transcript_20948.known	chr16	+	706	2	FSM	ENSMUSG00000055692.22	ENSMUST00000231334.2	706	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTCTTCTTTGGGATCA	NA	False	NA	11	True	AATAAA	-22	NA	17095464	17101093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_17095756_17100678
transcript_20949.known	chr16	+	3447	5	FSM	ENSMUSG00000022765.11	ENSMUST00000023449.11	3447	5	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	7.59522876548166	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCTTGACTAAGCCCCT	1384	False	NA	NA	False	AGTAAA	-15	NA	17223849	17248691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_17224224_17237127_17237325_17240329_17240416_17244900_17245006_17246006
transcript_20952.known	chr16	+	5042	3	FSM	ENSMUSG00000006134.5	ENSMUST00000006293.5	5042	3	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	8	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGGTGTTTCAGTGTCTC	3459	False	NA	20	True	AATAAA	-27	NA	17269850	17305298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_17270653_17286756_17287223_17301524
transcript_20956.known	chr16	+	2688	21	FSM	ENSMUSG00000022763.19	ENSMUST00000023448.15	2688	21	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_11	2.45916652547159	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTCCTAGTGTAATTGG	4248	False	NA	NA	False	ATTAAA	-19	NA	17307526	17325349	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_17307756_17309156_17309348_17309784_17309968_17317411_17317626_17317864_17317975_17318152_17318263_17318353_17318399_17318610_17318708_17318789_17318903_17319316_17319404_17319954_17320047_17320129_17320261_17320359_17320476_17320576_17320649_17320757_17320822_17321329_17321407_17321507_17321626_17322781_17322881_17323547_17323624_17324093_17324199_17324990
transcript_20958.known	chr16	+	3394	21	FSM	ENSMUSG00000022761.13	ENSMUST00000023444.11	3394	21	0	0	0	0	multi-exon	FALSE	canonical	2	77	junction_5	14.8690113995518	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTCTCCGAGTCTTCT	NA	False	NA	32	True	NA	NA	NA	17326551	17344197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_17327083_17327489_17327553_17329929_17329987_17333671_17333752_17333837_17333947_17335319_17335404_17336380_17336439_17337250_17337391_17338299_17338502_17338754_17338911_17339308_17339420_17340020_17340114_17340244_17340341_17340421_17340588_17340831_17341002_17341140_17341298_17341959_17342087_17342171_17342322_17343102_17343209_17343286_17343368_17343540
transcript_20961.known	chr16	-	1110	5	FSM	ENSMUSG00000022760.18	ENSMUST00000231548.2	1110	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	41.2757495389242	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	7275	False	NA	1	True	AATAAA	-19	NA	17348911	17345941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641_17348722_17348841
transcript_20962.known	chr16	-	1248	5	FSM	ENSMUSG00000022760.18	ENSMUST00000100125.12	1248	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	27.8118679703468	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTAAATCTCTGTTTGCAGT	7186	False	NA	97	True	NA	NA	NA	17349000	17345845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641_17348722_17348888
transcript_20963.known	chr16	-	734	4	FSM	ENSMUSG00000022760.18	ENSMUST00000231288.2	734	4	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_3	13.0724477007517	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCCCTCTAGGTGCTCAGG	7267	False	NA	NA	False	NA	NA	NA	17348919	17346445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_17346605_17346798_17346940_17348093_17348250_17348641
transcript_20969.nnic	chr16	-	1060	3	NIC	ENSMUSG00000022760.18	novel	1110	5	NA	NA	5	0	intron_retention	FALSE	canonical	3	9	junction_2	46	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTTTGGCTTGGCTGG	7289	False	NA	1	True	AATAAA	-19	NA	17348897	17345941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_17346605_17346798_17346940_17348641
transcript_20973.known	chr16	-	849	2	FSM	ENSMUSG00000022760.18	ENSMUST00000231676.2	849	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCCTGCAAGCGGCGGGA	7641	False	NA	NA	False	NA	NA	NA	17348545	17346207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_17346605_17348093
transcript_20974.known	chr16	-	766	2	FSM	ENSMUSG00000022760.18	ENSMUST00000232041.2	766	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAGACTCTGAAGGACCAT	7270	False	NA	NA	False	NA	NA	NA	17348916	17346113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_17346605_17348641
transcript_20976.known	chr16	+	337	1	FSM	ENSMUSG00000116898.2	ENSMUST00000231565.2	337	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGAACATTTTCTTTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	17349045	17349382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_17349000_17349400
transcript_20978.known	chr16	-	3281	5	FSM	ENSMUSG00000022756.18	ENSMUST00000172164.10	3281	5	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_4	5.33853912601566	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGGCTTTGGCAAGCT	NA	False	NA	NA	False	NA	NA	NA	17394585	17389881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_17391317_17391419_17391529_17391809_17392451_17392815_17393830_17394503
transcript_20979.known	chr16	+	4623	20	FSM	ENSMUSG00000005899.15	ENSMUST00000006053.13	4623	20	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_11	83.2673829522215	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCATCTCCCTGTTTTGG	NA	False	NA	15	True	NA	NA	NA	17437217	17462692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_17437299_17439305_17439390_17441768_17441856_17443583_17443727_17443807_17443884_17444293_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17453345_17453433_17456359_17456506_17457137_17457229_17457608_17457710_17457989_17458154_17458728_17458926_17459225_17459460_17459561_17459694_17460032_17460162_17460337
transcript_20980.known	chr16	+	4532	19	FSM	ENSMUSG00000005899.15	ENSMUST00000163476.10	4532	19	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_5	25.2948660188897	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGCCATCTCCCTGTTTTG	NA	False	NA	14	True	NA	NA	NA	17437220	17462691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_17437299_17439305_17439390_17441768_17441856_17443583_17443727_17443807_17443884_17444293_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17456359_17456506_17457137_17457229_17457608_17457710_17457989_17458154_17458728_17458926_17459225_17459460_17459561_17459694_17460032_17460162_17460337
transcript_20981.nic	chr16	+	3125	18	NIC	ENSMUSG00000005899.15	novel	4532	19	NA	NA	-5	152	combination_of_known_junctions	FALSE	canonical	3	12	junction_2	64.5519023490851	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCTGGGCTGAATCTT	NA	False	NA	4	True	AATAAA	-17	NA	17437212	17461363	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_17437299_17439305_17439390_17443583_17443727_17443807_17443884_17444293_17444403_17444502_17444556_17444665_17444818_17446932_17447063_17449849_17449922_17456359_17456506_17457137_17457229_17457608_17457710_17457989_17458154_17458728_17458926_17459225_17459460_17459561_17459694_17460032_17460162_17460337
transcript_20983.known	chr16	+	698	6	FSM	ENSMUSG00000041617.11	ENSMUST00000183279.2	698	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	3.2	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTAAGCTTCCTTCTTCA	NA	False	NA	NA	False	AATAAA	-14	NA	17464563	17468602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_17464648_17465471_17465517_17465930_17465991_17467858_17467939_17468012_17468070_17468230
transcript_20985.known	chr16	-	1189	4	FSM	ENSMUSG00000012114.18	ENSMUST00000232667.2	1189	4	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_3	17.4419672692682	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATCGCA	NA	False	NA	NA	False	NA	NA	NA	17540754	17500138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_17501053_17503316_17503369_17515470_17515559_17540619
transcript_20986.known	chr16	-	3475	3	FSM	ENSMUSG00000012114.18	ENSMUST00000232401.2	3475	3	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_2	16.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATCGCA	NA	False	NA	NA	False	NA	NA	NA	17540776	17500138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_17503369_17515470_17515559_17540619
transcript_20987.nic	chr16	+	2621	7	NIC	ENSMUSG00000022750.19	novel	2544	7	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	178	junction_1	113.988912716203	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGCTACAGTCTGAGTTT	NA	False	NA	19	True	AATAAA	-28	NA	17577469	17611246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_17577559_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
transcript_20988.known	chr16	+	2544	7	FSM	ENSMUSG00000022750.19	ENSMUST00000165790.9	2544	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	179.822520527572	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGGTGTTACATCTAATG	NA	False	NA	1	True	AATAAA	-10	NA	17577540	17611228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_17577571_17582247_17582511_17589567_17589734_17594265_17594985_17602066_17602260_17607000_17607235_17610289
transcript_20991.known	chr16	+	3266	4	FSM	ENSMUSG00000022750.19	ENSMUST00000144116.2	3266	4	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_1	142.007824510561	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAGAGAGAAAAAA	NA	False	NA	NA	False	TTTAAA	-14	NA	17577526	17597070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_17577559_17582247_17582511_17589567_17589734_17594265
transcript_20993.nic	chr16	+	3164	4	ISM	ENSMUSG00000022750.19	ENSMUST00000165790.9	2544	7	-71	14329	-12	-171	5prime_fragment	FALSE	canonical	0	0	junction_1	225.875088390809	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGGATATTTATTTACTG	NA	False	NA	NA	False	TATAAA	-26	NA	17577469	17596899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_+_17577571_17582247_17582511_17589567_17589734_17594265
transcript_20995.known	chr16	-	4003	10	FSM	ENSMUSG00000003166.21	ENSMUST00000117945.8	4003	10	0	0	0	0	multi-exon	TRUE	canonical	3	236	junction_7	73.3575717518876	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTCAGTTCTTGCTGT	NA	False	NA	-2	True	AATAAA	-18	NA	17709524	17658218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676435_17677267_17677391_17690426_17690550_17709249
transcript_20996.known	chr16	-	4045	10	FSM	ENSMUSG00000003166.21	ENSMUST00000012152.13	4045	10	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	135.772503989233	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGTCAGTTCTTGCTGT	NA	False	NA	-2	True	AATAAA	-18	NA	17709557	17658218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_17660642_17661835_17662073_17662846_17663000_17667454_17667659_17674615_17674793_17675121_17675199_17676223_17676444_17677267_17677391_17690426_17690550_17709249
transcript_20999.nic	chr16	-	1446	7	ISM	ENSMUSG00000003166.21	ENSMUST00000117945.8	4003	10	-51	9031	-18	-75	5prime_fragment	FALSE	canonical	3	236	junction_4	83.6932228770977	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGCTGACTGTTTACAGT	NA	False	NA	-6	True	AATAAA	-13	NA	17709575	17667249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_-_17667659_17674615_17674793_17675121_17675199_17676223_17676435_17677267_17677391_17690426_17690550_17709249
transcript_21.known	ERCC-00059	+	509	1	FSM	ERCC-00059A	DQ668356	509	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	509	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00059_+_0_500
transcript_21000.known	chr16	-	1468	7	FSM	ENSMUSG00000003166.21	ENSMUST00000155611.8	1468	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	165.862392763801	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATTTACGTGTGCATTTG	NA	False	NA	69	True	NA	NA	NA	17709513	17667174	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_17667659_17674615_17674793_17675121_17675199_17676223_17676444_17677267_17677391_17690426_17690550_17709249
transcript_21002.known	chr16	-	2785	10	FSM	ENSMUSG00000003527.10	ENSMUST00000232423.2	2785	10	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_7	33.1126025018337	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTTTCTATCAATTGT	NA	False	NA	0	True	NA	NA	NA	17729179	17718572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_17720188_17720681_17720798_17722865_17722976_17724134_17724238_17724972_17725107_17725383_17725502_17725613_17725784_17727768_17727865_17727951_17728121_17729025
transcript_21003.known	chr16	-	2821	10	FSM	ENSMUSG00000003527.10	ENSMUST00000003621.10	2821	10	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_7	18.4397584408805	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTTTCTATCAATTGT	NA	False	NA	0	True	NA	NA	NA	17729212	17718572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_17720188_17720681_17720798_17722865_17722976_17724134_17724238_17724972_17725107_17725383_17725502_17725613_17725787_17727768_17727865_17727951_17728121_17729025
transcript_21008.nnic	chr16	-	1537	9	NNC	ENSMUSG00000003528.16	novel	1666	9	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_8	623.222021032633	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCCTGTCCATCCCTTTG	NA	False	NA	-21	True	AATAAA	-16	NA	17745772	17743086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_17743792_17743893_17743968_17744052_17744169_17744298_17744404_17744519_17744605_17745017_17745157_17745230_17745331_17745408_17745517_17745667
transcript_21009.known	chr16	-	1666	9	FSM	ENSMUSG00000003528.16	ENSMUST00000003622.16	1666	9	0	0	0	0	multi-exon	FALSE	canonical	3	1593	junction_8	124.030175259894	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCCTGTCCATCCCTTTG	NA	False	NA	-21	True	AATAAA	-16	NA	17746083	17743086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_17743792_17743893_17743968_17744052_17744169_17744298_17744404_17744519_17744605_17745017_17745157_17745230_17745331_17745408_17745517_17745849
transcript_21014.nnic	chr16	-	1437	8	NNC	ENSMUSG00000003528.16	novel	1666	9	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_7	799.140788597353	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCCTGTCCATCCCTTTG	NA	False	NA	-21	True	AATAAA	-16	NA	17745772	17743086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_17743792_17743893_17743968_17744052_17744169_17744298_17744404_17744519_17744605_17745017_17745157_17745408_17745517_17745667
transcript_21017.known	chr16	+	759	2	FSM	ENSMUSG00000059280.5	ENSMUST00000075371.5	759	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGGTCTGGCTGGTTTG	975	False	NA	NA	False	ATTAAA	-14	NA	17798291	17799137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_17798475_17798561
transcript_21018.known	chr16	-	2386	14	FSM	ENSMUSG00000003526.13	ENSMUST00000003620.13	2386	14	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_5	13.1900087703135	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTTTCTCTTGGTACCT	7943	False	NA	0	True	AATAAA	-20	NA	17907156	17889588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_17890228_17890313_17890403_17891418_17891518_17894105_17894282_17895307_17895455_17895654_17895748_17897050_17897133_17897775_17897856_17898029_17898147_17898326_17898392_17898789_17898940_17899394_17899430_17902410_17902620_17906751
transcript_2102.known	chr1	+	2733	16	FSM	ENSMUSG00000026342.11	ENSMUST00000027580.11	2733	16	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	11.5808270669912	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGCTTAAGCGATGACAT	NA	False	NA	NA	False	TTTAAA	-41	NA	125488752	125523557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_125489022_125490011_125490103_125490236_125490379_125494204_125494349_125496283_125496347_125498283_125498366_125500049_125500241_125502402_125502485_125503908_125503997_125506999_125507065_125512189_125512295_125512810_125512971_125515101_125515193_125517547_125517703_125518769_125518867_125522649
transcript_21026.known	chr16	+	1050	5	FSM	ENSMUSG00000003531.16	ENSMUST00000066027.14	1050	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_3	141.891463802443	438	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGGATCCTTTCCTAGTG	NA	False	NA	25	True	AATAAA	-31	NA	17884306	17889222	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_17884464_17884559_17884721_17887287_17887389_17887945_17888096_17888741
transcript_21028.known	chr16	-	687	2	FSM	ENSMUSG00000003526.13	ENSMUST00000132241.2	687	2	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATTGTCTTTTCAATTTG	8213	False	NA	NA	False	NA	NA	NA	17906886	17902067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_17902620_17906751
transcript_21032.known	chr16	+	2367	12	FSM	ENSMUSG00000022721.20	ENSMUST00000115640.8	2367	12	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	22.0168980933485	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	269	False	NA	8	True	AATAAA	-22	NA	18066746	18071366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_18067116_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
transcript_21033.known	chr16	+	2235	12	FSM	ENSMUSG00000022721.20	ENSMUST00000100099.10	2235	12	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	76.7194093342424	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGGTGAACCAGAGC	448	False	NA	8	True	AATAAA	-22	NA	18066925	18071366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_18067163_18067349_18067898_18068317_18068427_18068683_18068866_18069019_18069135_18069222_18069339_18069412_18069525_18069989_18070113_18070265_18070342_18070582_18070700_18070787_18070885_18070963
transcript_21046.known	chr16	-	1085	6	FSM	ENSMUSG00000005732.15	ENSMUST00000115645.10	1085	6	0	0	0	0	multi-exon	FALSE	canonical	3	10558	junction_4	1553.51498222579	2781	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCTGACAAGGCTATGTG	7133	False	NA	-1	True	AATAAA	-22	NA	18066596	18057647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_18058058_18058757_18058824_18059608_18059738_18063064_18063223_18065152_18065290_18066411
transcript_21047.nnic	chr16	-	1591	10	NNC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	99.7663938074006	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGGCTTTTTCTAA	NA	False	NA	-4	True	AATAAA	-16	NA	18161778	18118688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18161506_18161602_18161758
transcript_21048.nic	chr16	-	1589	9	NIC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_8	63.9256159532311	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGGCTTTTTCTAA	NA	False	NA	-4	True	AATAAA	-16	NA	18161774	18118688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18161661
transcript_21049.known	chr16	-	1622	9	FSM	ENSMUSG00000013539.15	ENSMUST00000115628.10	1622	9	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	57.8273291792038	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGAGTGTTGGCTTTTTCT	NA	False	NA	-6	True	AATAAA	-14	NA	18161906	18118690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18161758
transcript_21050.nic	chr16	-	1683	9	NIC	ENSMUSG00000013539.15	novel	1622	9	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_8	76.5371641753207	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGGCTTTTTCTAA	NA	False	NA	-4	True	AATAAA	-16	NA	18165941	18118688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_18119417_18120549_18120655_18121546_18121701_18125833_18125905_18128732_18128848_18130502_18130623_18134509_18134599_18142220_18142315_18165734
transcript_21053.known	chr16	+	1905	18	FSM	ENSMUSG00000075704.18	ENSMUST00000115606.9	1905	18	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_11	21.0007414599702	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGCGTGTGCTGTCCCC	NA	False	NA	NA	False	AATAAA	-21	NA	18245166	18297823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773_18274949_18287499_18287637_18290903_18291000_18291543_18291637_18293431_18293504_18294271_18294370_18296400_18296608_18297607
transcript_21054.known	chr16	+	4232	17	FSM	ENSMUSG00000118669.2	ENSMUST00000239547.1	4232	17	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_7	30.582815333942	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAGTTTGTGACTCATTC	NA	False	NA	18	True	NA	NA	NA	18210480	18225821	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_18210578_18214823_18214983_18215161_18215692_18216576_18217077_18217711_18217896_18218405_18218524_18218834_18219004_18220316_18220389_18221357_18221486_18221649_18221801_18222075_18222275_18222377_18222490_18222583_18222672_18222884_18222939_18223209_18223296_18223851_18223972_18224356
transcript_21056.known	chr16	+	1809	17	FSM	ENSMUSG00000075704.18	ENSMUST00000206606.3	1809	17	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_13	32.1674694955945	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGTCTGCGTGTGCTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	18245166	18297820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773_18274949_18287499_18287637_18290903_18291000_18293431_18293504_18294271_18294370_18296400_18296608_18297607
transcript_21059.known	chr16	+	1235	11	FSM	ENSMUSG00000075704.18	ENSMUST00000115604.8	1235	11	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_9	21.8229237271269	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGGTGCTGTCATTTA	NA	False	NA	NA	False	NA	NA	NA	18245187	18275218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773
transcript_21063.nnic	chr16	-	1774	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	48	4	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	81.8299388298005	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATTCACTGAGTTATTCT	3936	False	NA	NA	False	ATTAAA	-22	NA	18245306	18225631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_18226044_18226280_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
transcript_21064.nnic	chr16	-	1772	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	53	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	81.8299388298005	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAGAAATTCACTGAGTT	3941	False	NA	NA	False	ATTAAA	-17	NA	18245301	18225636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_18226050_18226278_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
transcript_21065.nnic	chr16	-	1821	7	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	-4	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	81.8299388298005	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAGAAATTCACTGAGTT	3884	False	NA	NA	False	ATTAAA	-17	NA	18245358	18225636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_18226058_18226294_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
transcript_21067.nnic	chr16	-	1727	6	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	38	4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.2773504263389	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATTCACTGAGTTATTCT	3926	False	NA	NA	False	ATTAAA	-22	NA	18245316	18225631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_18226044_18226280_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
transcript_21068.nnic	chr16	-	1730	6	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	38	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.2773504263389	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAGAAATTCACTGAGTT	3926	False	NA	NA	False	ATTAAA	-17	NA	18245316	18225636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_18226050_18226278_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
transcript_2107.known	chr1	-	447	1	FSM	ENSMUSG00000099471.2	ENSMUST00000170338.3	447	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCACACCGGAGGTTAAT	NA	False	NA	NA	False	NA	NA	NA	127210845	127210398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_127210400_127210800
transcript_21071.nnic	chr16	-	1722	6	NNC	ENSMUSG00000000326.14	novel	1397	6	NA	NA	38	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	90.2773504263389	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAGAAATTCACTGAGTT	3926	False	NA	NA	False	ATTAAA	-17	NA	18245316	18225636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_18226058_18226294_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
transcript_21072.known	chr16	-	1397	6	FSM	ENSMUSG00000000326.14	ENSMUST00000000335.12	1397	6	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_5	48.2825020064205	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGGGGG	3888	False	NA	NA	False	AAAAAG	-9	NA	18245354	18226293	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18243053_18243111_18245105
transcript_21073.known	chr16	-	1866	5	FSM	ENSMUSG00000000326.14	ENSMUST00000115609.10	1866	5	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_4	51.7656981021216	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACTGGAAGAGGAGATTT	3640	False	NA	NA	False	NA	NA	NA	18245602	18226015	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_18226791_18229432_18229565_18229876_18230071_18230439_18230708_18245105
transcript_21075.known	chr16	+	1604	4	FSM	ENSMUSG00000118669.2	ENSMUST00000239537.1	1604	4	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_1	37.8505834389203	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTATAGTTTTTCCTTGTT	NA	False	NA	NA	False	GATAAA	-20	NA	18210447	18217361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_18210578_18214823_18214983_18215161_18215692_18216576
transcript_21078.known	chr16	+	532	4	FSM	ENSMUSG00000075704.18	ENSMUST00000131303.8	532	4	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	7.03957069398096	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTCCCTGACTGTCTCT	NA	False	NA	12	True	NA	NA	NA	18245211	18256562	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_18245310_18248560_18248627_18255310_18255368_18256251
transcript_21079.known	chr16	+	1866	17	FSM	ENSMUSG00000075704.18	ENSMUST00000205679.3	1866	17	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	28.8766233309921	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCATGTCTGCGTGTGCT	NA	False	NA	NA	False	AATAAA	-15	NA	18245133	18297817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_18245310_18255310_18255368_18256251_18256397_18257068_18257144_18259542_18259622_18260497_18260561_18261953_18262025_18272470_18272491_18273238_18273331_18274773_18274949_18287499_18287637_18290903_18291000_18291543_18291637_18293431_18293504_18294271_18294370_18296400_18296608_18297607
transcript_2108.known	chr1	-	465	2	FSM	ENSMUSG00000102014.2	ENSMUST00000188163.2	465	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGTTGATGAATTTAGCATA	NA	False	NA	NA	False	AATAAA	-14	NA	127701791	127681352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_127681691_127701664
transcript_21084.known	chr16	+	1412	8	FSM	ENSMUSG00000000884.18	ENSMUST00000000904.15	1412	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	116.273604143022	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCTCAAGGTGGGAACTT	NA	False	NA	17	True	AATAAA	-19	NA	18317533	18383292	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_18317602_18317795_18317891_18359184_18359326_18359721_18359848_18362864_18363024_18366842_18366942_18371116_18371333_18382784
transcript_21086.known	chr16	+	3549	8	FSM	ENSMUSG00000000884.18	ENSMUST00000090086.11	3549	8	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	38.76564858485	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTAGACTTGATTTGTCC	NA	False	NA	NA	False	NA	NA	NA	18317637	18385429	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_18317702_18317795_18317891_18359184_18359326_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
transcript_21093.nnic	chr16	+	1275	7	NIC	ENSMUSG00000000884.18	novel	1519	9	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_2	97.958182688102	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAAGCCTCAAGGTGGGA	NA	False	NA	13	True	AATAAA	-15	NA	18317629	18383288	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_18317702_18317795_18317891_18359721_18359848_18362860_18363024_18366842_18366942_18371116_18371333_18382784
transcript_211.known	chr1	-	1894	5	FSM	ENSMUSG00000033845.14	ENSMUST00000130201.8	1894	5	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	911.97762445139	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTAAAACTCTCCCTCTTC	1649	False	NA	NA	False	AATAAA	-22	NA	4855933	4843428	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_4844740_4847747_4847872_4852790_4852957_4854173_4854329_4855795
transcript_21105.known	chr16	+	865	3	FSM	ENSMUSG00000086965.2	ENSMUST00000146673.2	865	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	96	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGTTGAGTACCATGCC	NA	False	NA	NA	False	AAAACA	-1	NA	18317650	18320408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_18317702_18317795_18317891_18319689
transcript_21109.known	chr16	+	1416	1	FSM	ENSMUSG00000041378.3	ENSMUST00000043577.3	1416	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTCCTGTCCTCTGTCC	NA	False	NA	NA	False	AGTAAA	-19	NA	18595596	18597012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_18595600_18597000
transcript_21110.known	chr16	-	2143	20	FSM	ENSMUSG00000000028.16	ENSMUST00000000028.14	2143	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_19	120.274616521947	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTCTGTGATCTTATT	NA	False	NA	-2	True	AATAAA	-21	NA	18630722	18599196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18627481_18627620_18629138_18629232_18630054_18630115_18630264_18630460_18630553
transcript_21115.nic	chr16	+	1116	12	NIC	ENSMUSG00000005262.14	novel	1996	12	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_2	122.971810248132	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGTTTGTTTAAAGTTACC	NA	False	NA	53	True	NA	NA	NA	18631040	18653154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_18631168_18633579_18633687_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
transcript_21118.known	chr16	+	1996	12	FSM	ENSMUSG00000005262.14	ENSMUST00000005394.13	1996	12	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_10	35.0072011482124	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGATATGGTATGTTGT	NA	False	NA	10	True	AATAAA	-20	NA	18631043	18654011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_18631168_18633579_18633713_18634078_18634112_18636652_18636775_18639788_18639920_18641972_18642046_18643737_18643807_18644502_18644569_18645004_18645053_18645767_18645857_18646385_18646468_18652985
transcript_2112.known	chr1	+	4511	10	FSM	ENSMUSG00000026349.15	ENSMUST00000112570.2	4511	10	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_9	104.758039851747	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGATTGTGTGAACTATT	NA	False	NA	27	True	ATTAAA	-21	NA	127701900	127733669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725624_127727126_127727291_127729342_127729414_127729898_127731031_127731128
transcript_21125.known	chr16	-	1747	18	FSM	ENSMUSG00000000028.16	ENSMUST00000096990.10	1747	18	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_15	122.52143375795	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCCTCTGGGTCTGTGAT	NA	False	NA	-8	True	AATAAA	-15	NA	18630376	18599202	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_18599324_18600645_18600713_18603555_18603633_18603822_18603942_18605518_18605603_18605679_18605819_18611927_18612090_18613511_18613611_18613844_18613977_18614574_18614695_18616098_18616150_18617425_18617488_18620550_18620600_18624131_18624188_18626029_18626174_18629138_18629232_18630054_18630115_18630264
transcript_21126.nnic	chr16	+	1258	4	NNC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	-8	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	72.2695571377664	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655319	18658910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_18655370_18655455_18655624_18657839_18658618_18658648
transcript_21127.nnic	chr16	+	1220	4	NNC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	72.2695571377664	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655319	18658910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_18655370_18655455_18655624_18657839_18658622_18658690
transcript_21131.known	chr16	+	361	3	FSM	ENSMUSG00000071632.11	ENSMUST00000123146.8	361	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	39.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGACTGGAAACTTAACT	NA	False	NA	NA	False	AGTAAA	-17	NA	18655330	18656137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_18655370_18655455_18655624_18655983
transcript_21132.known	chr16	+	1281	3	FSM	ENSMUSG00000071632.11	ENSMUST00000055413.13	1281	3	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	45.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655327	18658910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_18655370_18655455_18655624_18657839
transcript_21134.nnic	chr16	+	1336	3	NNC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_2	88.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655327	18658910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_18655624_18657839_18658618_18658648
transcript_21135.nnic	chr16	+	1298	3	NNC	ENSMUSG00000071632.11	novel	1281	3	NA	NA	0	0	intron_retention	FALSE	non_canonical	0	0	junction_2	88.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCTGTCTCAATTAGGGTT	NA	False	NA	17	True	ATTAAA	-17	NA	18655327	18658910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_18655624_18657839_18658622_18658690
transcript_21136.known	chr16	+	930	2	FSM	ENSMUSG00000071632.11	ENSMUST00000190776.2	930	2	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGGTGGCCCACGCCTT	NA	False	NA	63	True	NA	NA	NA	18655404	18658550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_18655624_18657839
transcript_21139.known	chr16	-	1280	4	FSM	ENSMUSG00000022706.17	ENSMUST00000023391.16	1280	4	0	0	0	0	multi-exon	FALSE	canonical	3	1642	junction_3	87.6711025493704	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGTCGTTTATTTTAATC	NA	False	NA	-7	True	AATAAA	-15	NA	18695612	18690767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_18691413_18692286_18692446_18694073_18694158_18695220
transcript_2114.known	chr1	+	6738	9	FSM	ENSMUSG00000026349.15	ENSMUST00000027587.15	6738	9	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_6	47.8289595851718	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAAGGCTGAAACATGTTT	NA	False	NA	8	True	AATAAA	-22	NA	127701900	127735798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991_127723055_127725577_127725624_127727126_127727291_127729342_127729414_127729898
transcript_21141.known	chr16	-	778	4	FSM	ENSMUSG00000022706.17	ENSMUST00000119273.2	778	4	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	827.835061403471	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGAGTATCTGTCTTTTG	NA	False	NA	-24	True	AATAAA	-7	NA	18695289	18690975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_18691413_18692286_18692446_18694073_18694187_18695220
transcript_21148.known	chr16	-	675	2	FSM	ENSMUSG00000022706.17	ENSMUST00000232123.2	675	2	0	0	0	0	multi-exon	FALSE	canonical	3	1642	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACATGTGTTTGGGGTGC	NA	False	NA	NA	False	NA	NA	NA	18695359	18693621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_18694158_18695220
transcript_21154.known	chr16	+	4258	4	FSM	ENSMUSG00000022686.15	ENSMUST00000079780.10	4258	4	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	15.8954920234218	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCAGTAATGTGAATTTAA	NA	False	NA	7	True	AATAAA	-15	NA	19578983	19591213	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_19579228_19579390_19579578_19583857_19583965_19587493
transcript_21157.known	chr16	+	8172	8	FSM	ENSMUSG00000062901.4	ENSMUST00000023509.5	8172	8	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	11.8562822407122	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGATGAGTTTTAAGTTTG	NA	False	NA	9	True	ATTAAA	-17	NA	19916291	19947971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_19916422_19920741_19920805_19925412_19926394_19933310_19933496_19934633_19934753_19936617_19936807_19938859_19939049_19941655
transcript_21159.known	chr16	+	2109	1	FSM	ENSMUSG00000062901.4	ENSMUST00000231740.2	2109	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGATTTCATT	NA	False	NA	NA	False	AATAAA	-23	NA	19916323	19918432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_19916300_19918400
transcript_21175.known	chr16	-	1362	10	FSM	ENSMUSG00000033918.17	ENSMUST00000136252.8	1362	10	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_6	534.615126360388	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121095	20098569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20112047_20112153_20116342_20116484_20116880_20117077_20120958
transcript_2118.known	chr1	+	1040	5	FSM	ENSMUSG00000026349.15	ENSMUST00000149760.8	1040	5	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_4	23.7539470404394	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TGAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	127701900	127723537	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094_127721156_127722991
transcript_21180.known	chr16	-	1348	10	FSM	ENSMUSG00000033918.17	ENSMUST00000048642.15	1348	10	0	0	0	0	multi-exon	FALSE	canonical	3	1528	junction_6	107.954723019524	2188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121137	20098569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20112103_20112153_20116342_20116484_20116880_20117077_20120958
transcript_21189.known	chr16	-	1246	9	FSM	ENSMUSG00000033918.17	ENSMUST00000232036.2	1246	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	583.055301300829	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTCGTTCCTTCAGAG	NA	False	NA	-16	True	AATAAA	-24	NA	20121137	20098569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_20098836_20101472_20101571_20104514_20104586_20105669_20105820_20106606_20106703_20112103_20112153_20116342_20116484_20116880_20117077_20120958
transcript_2119.known	chr1	+	665	4	FSM	ENSMUSG00000026349.15	ENSMUST00000125760.8	665	4	0	0	0	0	multi-exon	FALSE	canonical	3	495	junction_3	16.8193010820572	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCCCATGGCTTCAGTGT	NA	False	NA	NA	False	NA	NA	NA	127701900	127721326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_127702123_127702837_127702920_127719341_127719471_127721094
transcript_2120.known	chr1	+	4243	24	FSM	ENSMUSG00000036104.13	ENSMUST00000037649.6	4243	24	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	17.6995509005001	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGGACTTGTGGCTTT	3029	False	NA	18	True	AATAAA	-15	NA	127796509	127871605	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_127796567_127796661_127796718_127801816_127801893_127816892_127817026_127818754_127818834_127829315_127829436_127831408_127831575_127837587_127837688_127843375_127843458_127845957_127846027_127847304_127847379_127852464_127852558_127853011_127853179_127855196_127855287_127855685_127855859_127858126_127858182_127858443_127858816_127862153_127862292_127865074_127865303_127865725_127865823_127865934_127866039_127866311_127866428_127866782_127866886_127870110
transcript_21200.known	chr16	-	848	7	FSM	ENSMUSG00000033918.17	ENSMUST00000232484.2	848	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	637.544682529956	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTCAGCATCGGCCACCC	NA	False	NA	-122	True	NA	NA	NA	20121129	20098675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_20098836_20101472_20101571_20101673_20101776_20104514_20104586_20105669_20105820_20106606_20106703_20120958
transcript_21206.known	chr16	-	5811	30	FSM	ENSMUSG00000022822.17	ENSMUST00000079158.13	5811	30	0	0	0	0	multi-exon	TRUE	canonical	3	160	junction_25	98.9917903368873	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTGTTGTATAAAACAG	NA	False	NA	-3	True	AATAAA	-20	NA	20245144	20150052	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_20151456_20152335_20152501_20153855_20153970_20157625_20157705_20163384_20163545_20176118_20176309_20180931_20181022_20182724_20182912_20184354_20184484_20184562_20184717_20186791_20186922_20187173_20187321_20187775_20187961_20190869_20190970_20193740_20193885_20195260_20195465_20197196_20197270_20197391_20197517_20208118_20208191_20211200_20211558_20214764_20214873_20215729_20215879_20217562_20217711_20218224_20218399_20218555_20218790_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
transcript_21207.nnic	chr16	-	1099	7	NNC	ENSMUSG00000022822.17	novel	1136	7	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_2	90.516419627724	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGGTATTTACTGCTG	NA	False	NA	-9	True	AATAAA	-17	NA	20245104	20219510	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_20219785_20221009_20221085_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
transcript_21209.known	chr16	-	1136	7	FSM	ENSMUSG00000022822.17	ENSMUST00000096199.5	1136	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	91.9287163452688	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTGGTATTTACTGCTG	NA	False	NA	-9	True	AATAAA	-17	NA	20245104	20219510	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_20219822_20221009_20221085_20223315_20223464_20224138_20224295_20224476_20224635_20241054_20241236_20244997
transcript_2121.known	chr1	+	854	7	FSM	ENSMUSG00000036104.13	ENSMUST00000142662.2	854	7	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	21.5619263208709	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAGCAGTTCTTCCAGAG	3058	False	NA	NA	False	NA	NA	NA	127796538	127831770	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_127796567_127796661_127796718_127801816_127801893_127816892_127817026_127818754_127818834_127829315_127829436_127831408
transcript_21210.known	chr16	+	2554	16	FSM	ENSMUSG00000003235.14	ENSMUST00000003320.14	2554	16	0	0	0	0	multi-exon	TRUE	canonical	3	2657	junction_7	154.998007155648	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTTGTACTTGTTAAT	NA	False	NA	27	True	AGTAAA	-18	NA	20317566	20328073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_20317847_20318934_20319060_20320113_20320300_20320379_20320558_20320653_20320735_20320992_20321071_20321279_20321593_20323394_20323541_20323948_20324091_20324211_20324314_20324877_20324986_20325130_20325222_20325757_20325882_20326777_20326904_20327458_20327570_20327710
transcript_21213.known	chr16	+	2937	12	FSM	ENSMUSG00000022841.16	ENSMUST00000007216.9	2937	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	997.461306443132	857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAGAA	1355	False	NA	NA	False	NA	NA	NA	20354229	20363659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359557_20359564_20359724_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
transcript_21223.known	chr16	+	2080	11	FSM	ENSMUSG00000022841.16	ENSMUST00000090023.13	2080	11	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_4	799.773617969485	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTGTTTGGGTCTTG	1353	False	NA	17	True	NA	NA	NA	20354227	20362806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_20354352_20356367_20356485_20358057_20358324_20359082_20359166_20359724_20359861_20359959_20360102_20360496_20360617_20360705_20360842_20360946_20361045_20361388_20361501_20362060
transcript_21238.known	chr16	+	3090	21	FSM	ENSMUSG00000003234.17	ENSMUST00000003319.6	3090	21	0	0	0	0	multi-exon	TRUE	canonical	3	293	junction_13	17.6705970470723	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACACGTGCAAGAGCATG	NA	False	NA	10	True	AATAAA	-19	NA	20367326	20380129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_20367496_20367715_20367864_20367984_20368065_20368493_20368541_20368753_20368852_20368951_20369075_20369170_20369438_20370223_20370305_20370393_20370454_20370555_20370613_20370711_20370735_20370848_20370905_20371008_20371210_20371303_20371381_20377309_20377355_20377446_20377580_20378040_20378130_20378390_20378483_20378664_20378798_20378932_20379021_20379106
transcript_21245.known	chr16	+	3152	19	FSM	ENSMUSG00000022842.19	ENSMUST00000003898.12	3152	19	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_18	7.37781124490401	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCAGCCTGTCTCTTCCTT	NA	False	NA	13	True	AATAAA	-13	NA	20448577	20464665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_20448798_20449101_20449189_20449530_20449661_20449846_20450063_20451281_20451407_20451497_20451645_20451799_20451866_20456410_20456600_20457409_20457553_20457921_20458037_20459364_20459476_20461024_20461124_20461222_20461301_20462095_20462200_20462372_20462484_20462602_20462671_20462817_20463009_20463090_20463187_20463809
transcript_2125.known	chr1	-	4210	21	FSM	ENSMUSG00000036086.17	ENSMUST00000086614.12	4210	21	0	0	0	0	multi-exon	TRUE	canonical	3	115	junction_3	27.0654761642946	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAATTATGGGTACGT	NA	False	NA	-5	True	AATAAA	-22	NA	128030199	127881920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_127882803_127884273_127884406_127887446_127887838_127888495_127888607_127891497_127891641_127892799_127892902_127895614_127895707_127900683_127900882_127903875_127904282_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029989
transcript_21250.known	chr16	-	1451	9	FSM	ENSMUSG00000033809.16	ENSMUST00000045918.15	1451	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	107.475578621378	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTAGTGGTTGCTCGTGCCT	NA	False	NA	13	True	AATAAA	-36	NA	20429518	20424200	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20427736_20427837_20429292
transcript_21251.nic	chr16	-	1391	9	NIC	ENSMUSG00000033809.16	novel	1451	9	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	132.226072977307	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGTGCAGCATACATAA	NA	False	NA	-8	True	AATAAA	-15	NA	20429516	20424221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20427736_20427837_20429329
transcript_21256.known	chr16	-	1308	8	FSM	ENSMUSG00000033809.16	ENSMUST00000123774.2	1308	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	136.842975705734	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTTTGTGCAGCATACATA	NA	False	NA	-9	True	AATAAA	-14	NA	20429497	20424222	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20429292
transcript_21257.known	chr16	-	1239	8	FSM	ENSMUSG00000033809.16	ENSMUST00000231904.2	1239	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	139.378650313688	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGGAACGGACTCTGTG	NA	False	NA	-55	True	NA	NA	NA	20429511	20424268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427235_20427397_20427491_20427640_20429329
transcript_21259.known	chr16	-	1215	8	FSM	ENSMUSG00000033809.16	ENSMUST00000231471.2	1215	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	139.403247114701	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGGAACGGACTCTGTG	NA	False	NA	-55	True	NA	NA	NA	20429511	20424268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427491_20427640_20427736_20427837_20429292
transcript_21263.known	chr16	-	1132	7	FSM	ENSMUSG00000033809.16	ENSMUST00000127454.8	1132	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	157.124154731219	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGTGCAGCATACATAA	NA	False	NA	-8	True	AATAAA	-15	NA	20429481	20424221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20427491_20427640_20429292
transcript_21268.nnic	chr16	-	1005	6	NIC	ENSMUSG00000033809.16	novel	1132	7	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	164.001951207905	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTTGTGCAGCATACATAA	NA	False	NA	-8	True	AATAAA	-15	NA	20429502	20424221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_20424468_20424611_20424757_20425275_20425353_20425509_20425716_20426513_20426635_20429292
transcript_21273.known	chr16	+	1134	3	FSM	ENSMUSG00000115219.3	ENSMUST00000115522.10	1134	3	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_2	23	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACTGCTTTATGCTTCTG	5899	False	NA	12	True	NA	NA	NA	20430342	20437761	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_20430571_20436375_20436660_20437139
transcript_21281.known	chr16	+	2961	21	FSM	ENSMUSG00000006998.17	ENSMUST00000007212.9	2961	21	0	0	0	0	multi-exon	FALSE	canonical	3	2673	junction_8	225.447882003801	875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	23	True	AATAAA	-16	NA	20470401	20482164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_20470602_20470993_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
transcript_21292.known	chr16	+	3001	21	FSM	ENSMUSG00000006998.17	ENSMUST00000172207.8	3001	21	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	681.526116520857	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTCTGTCTATTTCCTGG	NA	False	NA	23	True	AATAAA	-16	NA	20470453	20482164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_20470602_20470901_20471051_20471342_20471508_20473297_20473420_20473567_20473793_20474002_20474162_20474308_20474454_20474630_20474692_20475292_20475440_20475617_20475725_20476231_20476360_20476723_20476812_20478155_20478319_20478428_20478531_20478706_20478853_20479092_20479177_20480314_20480484_20480565_20480661_20480842_20480970_20481371_20481491_20481812
transcript_21293.known	chr16	-	3128	24	FSM	ENSMUSG00000022843.18	ENSMUST00000007207.15	3128	24	0	0	0	0	multi-exon	TRUE	canonical	3	159	junction_10	37.9003269459341	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGCTGTTGGCTCATAT	NA	False	NA	1	True	AATAAA	-39	NA	20534867	20521713	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_20522188_20522304_20522392_20525923_20526029_20526168_20526208_20526322_20526383_20526592_20526667_20526826_20526942_20527043_20527217_20527383_20527518_20527851_20528066_20528319_20528431_20528629_20528700_20529021_20529178_20529304_20529390_20530439_20530542_20530641_20530727_20530806_20530933_20531061_20531141_20531221_20531300_20531403_20531538_20531629_20531759_20532077_20532210_20532362_20532520_20534658
transcript_21296.known	chr16	+	950	5	FSM	ENSMUSG00000021018.9	ENSMUST00000021405.8	950	5	0	0	0	0	multi-exon	FALSE	canonical	3	628	junction_4	109.533955922353	865	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTCCATTGTCATTGC	904	False	NA	15	True	ATTAAA	-16	NA	20536414	20541017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_20536745_20537573_20537658_20537740_20537835_20539268_20539353_20540659
transcript_21298.known	chr16	+	689	4	FSM	ENSMUSG00000021018.9	ENSMUST00000231656.2	689	4	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_2	345.101273380567	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCTTCTCCATTGTCATT	1069	False	NA	13	True	ATTAAA	-14	NA	20536579	20541015	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_20536745_20537573_20537658_20539268_20539353_20540659
transcript_21299.nnic	chr16	-	1549	6	NNC	ENSMUSG00000022847.16	novel	2416	6	NA	NA	-3	3155	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	9.81019877474458	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTTAAACTCTTTGTTTG	NA	False	NA	NA	False	AGTAAA	-15	NA	20549380	20540048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_20540933_20545055_20545224_20547131_20547219_20547468_20547597_20547813_20547968_20549252
transcript_21302.known	chr16	-	1558	6	FSM	ENSMUSG00000022847.16	ENSMUST00000076422.13	1558	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	5.38887743412299	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGCTTTCATACATTAA	NA	False	NA	2	True	TATAAA	-23	NA	20549348	20543907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_20544833_20545055_20545224_20547131_20547219_20547468_20547597_20547813_20547968_20549252
transcript_21303.known	chr16	+	2417	14	FSM	ENSMUSG00000006958.15	ENSMUST00000115423.8	2417	14	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	2.23474446866676	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTGCCTTGTTTCTACT	3222	False	NA	NA	False	NA	NA	NA	20551876	20556902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_20552046_20552280_20552385_20552756_20552887_20553022_20553152_20553236_20553337_20553435_20553524_20553866_20554009_20554120_20554250_20554330_20554414_20554495_20554644_20554786_20554894_20555013_20555134_20555658_20555816_20556091
transcript_21305.known	chr16	-	496	1	FSM	ENSMUSG00000099764.2	ENSMUST00000127484.2	496	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	120	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTTGGAGTTTATGTTGT	NA	False	NA	NA	False	NA	NA	NA	20641390	20640894	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_20640900_20641400
transcript_21306.known	chr16	-	1346	1	FSM	ENSMUSG00000090356.3	ENSMUST00000170665.3	1346	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTCAGTGTACTTCTGA	NA	False	NA	NA	False	NA	NA	NA	20972750	20971404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_20971400_20972800
transcript_21307.known	chr16	-	1455	1	FSM	ENSMUSG00000116632.2	ENSMUST00000231504.2	1455	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTTGTGTTGCACAGTT	NA	False	NA	NA	False	AATAAA	-16	NA	21152106	21150651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_21150700_21152100
transcript_21308.known	chr16	+	722	3	FSM	ENSMUSG00000033653.19	ENSMUST00000127903.2	722	3	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_1	94.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTCAGACCGCAGATGGGC	NA	False	NA	NA	False	NA	NA	NA	21446380	21463166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_21446726_21459428_21459510_21462870
transcript_21309.known	chr16	-	2981	7	FSM	ENSMUSG00000022853.8	ENSMUST00000023559.7	2981	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	3.35410196624968	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCATTGTGTAAAAAACTG	NA	False	NA	NA	False	AATAAA	-19	NA	21606557	21580036	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_21582087_21584975_21585318_21589165_21589271_21592244_21592357_21594094_21594262_21596548_21596653_21606456
transcript_21316.known	chr16	+	767	4	FSM	ENSMUSG00000097290.10	ENSMUST00000211443.2	767	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	60.8896999134957	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGTTGAAAGGTCCATG	NA	False	NA	30	True	AATAAA	-35	NA	21613067	21627790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_21613197_21614599_21614726_21625720_21625870_21627427
transcript_21317.known	chr16	+	574	3	FSM	ENSMUSG00000097290.10	ENSMUST00000181960.3	574	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_2	32	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGTTGAAAGGTCCATG	NA	False	NA	30	True	AATAAA	-35	NA	21613111	21627790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_21613197_21614599_21614726_21627427
transcript_21318.known	chr16	-	1360	5	FSM	ENSMUSG00000022856.10	ENSMUST00000023562.9	1360	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	14.1244468918255	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGCAGGTTCTGAATGT	9190	False	NA	-2	True	ATTAAA	-16	NA	21766302	21753075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_21753796_21755730_21755870_21756682_21756845_21764750_21764905_21766117
transcript_21319.known	chr16	-	1184	4	FSM	ENSMUSG00000022856.10	ENSMUST00000232635.2	1184	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	70.6304938866115	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTGCAGGTTCTGAATG	9211	False	NA	-3	True	ATTAAA	-15	NA	21766281	21753076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_21753796_21755730_21755870_21756682_21756845_21766117
transcript_2132.nic	chr1	-	2060	13	NIC	ENSMUSG00000036086.17	novel	1913	13	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	50.1305933426774	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGATATGTGTGATTGGTG	NA	False	NA	NA	False	AATAAA	-15	NA	128030216	127914846	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_127915137_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128029989
transcript_21321.known	chr16	-	2118	10	FSM	ENSMUSG00000044626.14	ENSMUST00000231766.2	2118	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	59.9637750728526	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAACAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	21814190	21774142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21792807_21792892_21794982_21795085_21800085_21800195_21802650_21803019_21814070
transcript_21322.known	chr16	-	2065	10	FSM	ENSMUSG00000044626.14	ENSMUST00000231682.2	2065	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	60.1727964457259	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGGGTTTGGCTCTTACGT	NA	False	NA	NA	False	NA	NA	NA	21814263	21774333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_21774928_21777530_21777705_21780894_21781007_21784703_21784800_21786734_21786903_21792807_21792898_21794982_21795085_21800085_21800195_21802591_21803019_21814070
transcript_2133.known	chr1	-	1913	13	FSM	ENSMUSG00000036086.17	ENSMUST00000097597.7	1913	13	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_12	65.8438282773885	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGATATGTGTGATTGGTG	NA	False	NA	NA	False	AATAAA	-15	NA	128030784	127914846	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_127915137_127915733_127915884_127920536_127920717_127924589_127924710_127927077_127927198_127943779_127943897_127945294_127945467_127960585_127960672_127964134_127964367_127968554_127968734_127985718_127985738_128019579_128019748_128030704
transcript_21330.known	chr16	+	4499	17	FSM	ENSMUSG00000022855.10	ENSMUST00000023561.8	4499	17	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_11	50.6099900587819	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGAGTGCTTTATGCTTGT	2202	False	NA	35	True	AGTAAA	-42	NA	21828233	21868019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_21828493_21830243_21830303_21832873_21833008_21834948_21835016_21837086_21837178_21842389_21842559_21845388_21845490_21846718_21846814_21847290_21847343_21850853_21850915_21855219_21855397_21857286_21857419_21859189_21859394_21860071_21860152_21861719_21861805_21862962_21863059_21865382
transcript_21331.known	chr16	+	2135	17	FSM	ENSMUSG00000022855.10	ENSMUST00000231724.2	2135	17	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	111.888616489793	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGCTTGAAACCCTGTTT	2230	False	NA	NA	False	NA	NA	NA	21828261	21865616	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_21828493_21830243_21830370_21832873_21833008_21834948_21835016_21837086_21837178_21842389_21842559_21845388_21845490_21846718_21846814_21847290_21847343_21850853_21850915_21855219_21855397_21857286_21857419_21859189_21859394_21860071_21860152_21861719_21861805_21862962_21863059_21865382
transcript_21334.known	chr16	-	3899	16	FSM	ENSMUSG00000033581.18	ENSMUST00000100052.11	3899	16	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_2	81.6059366032208	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGGTGTCTTGGTGTCTT	2273	False	NA	NA	False	AATATA	-16	NA	21982049	21877758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_21879636_21880609_21880724_21882331_21882464_21883842_21883918_21886892_21887010_21889056_21889126_21894766_21894896_21897365_21897502_21898233_21898357_21898816_21898952_21900483_21900736_21902673_21902738_21906277_21906330_21907811_21907861_21979995_21980057_21981535
transcript_21338.known	chr16	-	3403	9	FSM	ENSMUSG00000022858.17	ENSMUST00000161286.8	3403	9	0	0	0	0	multi-exon	TRUE	canonical	3	1235	junction_5	313.549014310363	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTACATAATGAATACGTGTG	NA	False	NA	NA	False	AATAAA	-22	NA	22084755	22063298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22084490
transcript_21351.known	chr16	-	1687	10	FSM	ENSMUSG00000022858.17	ENSMUST00000162413.9	1687	10	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_8	660.884723143114	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTTTCTTTCTAAATATC	NA	False	NA	-20	True	AATAAA	-14	NA	22084676	22065211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_22065617_22065939_22066014_22067185_22067246_22067799_22067884_22069614_22069731_22071356_22071546_22073157_22073321_22073733_22073868_22077735_22078012_22084490
transcript_21354.nnic	chr16	+	953	4	NNC	ENSMUSG00000089663.2	novel	2507	2	NA	NA	-291	-1106	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.24721912892465	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTTATTAGACTCCGTG	NA	False	NA	NA	False	NA	NA	NA	22367011	22368793	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_22367125_22367243_22367331_22367420_22367502_22368121
transcript_21355.known	chr16	-	2803	8	FSM	ENSMUSG00000004462.8	ENSMUST00000004576.8	2803	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_7	24.7526539496479	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGCCAGAGTTGGTT	NA	False	NA	NA	False	AATAAA	-21	NA	22676419	22631963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676094
transcript_21356.known	chr16	-	2645	8	FSM	ENSMUSG00000004462.8	ENSMUST00000232075.2	2645	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_7	25.2214680179325	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTTTACTGTGCCAGAG	NA	False	NA	NA	False	AATAAA	-15	NA	22676417	22631969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_22632707_22637130_22637279_22640831_22641330_22641452_22641640_22644515_22644883_22652627_22652784_22660478_22660858_22676244
transcript_21361.known	chr16	-	1371	4	FSM	ENSMUSG00000004462.8	ENSMUST00000232681.2	1371	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	30.539591789457	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAATGCCTTTGTTAGGA	NA	False	NA	NA	False	NA	NA	NA	22676292	22644244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_22644883_22652627_22652784_22660478_22660858_22676094
transcript_21366.known	chr16	+	1927	10	FSM	ENSMUSG00000004460.18	ENSMUST00000004574.14	1927	10	0	0	0	0	multi-exon	FALSE	canonical	3	939	junction_3	70.1998909640038	476	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGTATCTGTCCAAG	NA	False	NA	30	True	AATAAA	-34	NA	22676594	22691138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_22676860_22681291_22681449_22684203_22684302_22685669_22685803_22687460_22687604_22687870_22687954_22688165_22688224_22689320_22689433_22689689_22689850_22690420
transcript_2137.known	chr1	+	414	1	FSM	ENSMUSG00000058603.11	ENSMUST00000121497.2	414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9917	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCACACGCCCGAAGCAA	NA	False	NA	NA	False	NA	NA	NA	127966305	127966719	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_127966300_127966700
transcript_21372.nic	chr16	+	1327	6	ISM	ENSMUSG00000022868.7	ENSMUST00000232556.2	1336	7	1784	0	-568	0	3prime_fragment	FALSE	canonical	3	93	junction_1	9.66643677887566	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCATGTTCCTTGTCT	NA	False	NA	22	True	NA	NA	NA	22712940	22718193	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_+_22713186_22713544_22713630_22713943_22714108_22715257_22715360_22716877_22716962_22717546
transcript_2138.known	chr1	+	6449	8	FSM	ENSMUSG00000056211.14	ENSMUST00000190288.2	6449	8	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_7	13.5796967295042	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCACTTTGTCTTTTTT	NA	False	NA	18	True	AATAAA	-14	NA	128134728	128165472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_128139097_128144137_128144290_128149336_128149441_128151205_128151379_128159059_128159205_128162802_128162886_128163278_128163364_128164133
transcript_21383.known	chr16	+	1520	8	FSM	ENSMUSG00000022871.14	ENSMUST00000170805.9	1520	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	163.600059877241	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAACTGGAAATGAGACTAA	NA	False	NA	35	True	AATAAA	-41	NA	22737131	22758528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_22737341_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
transcript_21387.known	chr16	+	1544	8	FSM	ENSMUSG00000022871.14	ENSMUST00000023587.12	1544	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	202.97702694982	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTTGGCTTCAACCTG	NA	False	NA	9	True	AATAAA	-15	NA	22738986	22758502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_22739246_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
transcript_21388.known	chr16	+	798	7	FSM	ENSMUSG00000022871.14	ENSMUST00000231880.2	798	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	173.937728320607	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGATGATGAGAAGCCCGA	NA	False	NA	NA	False	NA	NA	NA	22737248	22758154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_22737345_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
transcript_21389.known	chr16	+	1094	7	FSM	ENSMUSG00000022871.14	ENSMUST00000116625.10	1094	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	171.730408877791	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTTGGCTTCAACCTG	NA	False	NA	9	True	AATAAA	-15	NA	22739201	22758502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_22739246_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
transcript_2139.known	chr1	+	4113	13	FSM	ENSMUSG00000026353.10	ENSMUST00000027592.6	4113	13	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_2	38.8918550456119	164	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCATTTTGCTCTTTCC	94	False	NA	NA	False	NA	NA	NA	128171898	128207115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_128172290_128179939_128180043_128183169_128183199_128183855_128183975_128186568_128186741_128187180_128187275_128188570_128188626_128190529_128190695_128194026_128194152_128197605_128197709_128200557_128200690_128202538_128202742_128204693
transcript_21391.known	chr16	+	1597	9	FSM	ENSMUSG00000022871.14	ENSMUST00000232097.2	1597	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	224.84435588869	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTCAACCTGTTGAC	NA	False	NA	14	True	AATAAA	-20	NA	22739065	22758507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_22739246_22740498_22740626_22747824_22748060_22748382_22748494_22750999_22751088_22752982_22753147_22754391_22754491_22756596_22756708_22758025
transcript_21393.known	chr16	-	1577	11	FSM	ENSMUSG00000060459.15	ENSMUST00000115349.9	1577	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	3.1559467676119	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGGTCTCCTTTCAGCCA	9727	False	NA	NA	False	AATAAA	-21	NA	22847818	22804603	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_22804819_22806994_22807076_22815772_22815860_22815960_22816069_22818563_22818737_22819280_22819366_22822681_22822790_22830746_22830920_22843589_22843672_22845797_22845909_22847464
transcript_21422.known	chr16	-	1228	11	FSM	ENSMUSG00000022881.16	ENSMUST00000023598.15	1228	11	0	0	0	0	multi-exon	FALSE	canonical	2	1237	junction_10	165.436271718145	1222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATATACAATTTTATTTA	NA	False	NA	-26	True	AATAAA	-23	NA	22946487	22932692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_22932858_22932936_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
transcript_21431.known	chr16	-	1279	10	FSM	ENSMUSG00000022881.16	ENSMUST00000115338.8	1279	10	0	0	0	0	multi-exon	FALSE	canonical	2	1237	junction_9	172.55065457732	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATATAAAGTGAATATACAAT	NA	False	NA	-34	True	AATAAA	-15	NA	22946467	22932700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_22933054_22933194_22933276_22933356_22933483_22934124_22934246_22934464_22934609_22936693_22936814_22939658_22939739_22943285_22943365_22946149_22946292_22946434
transcript_21434.known	chr16	+	698	6	FSM	ENSMUSG00000022884.17	ENSMUST00000130113.8	698	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	857.670659402547	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTGAGCGAGAGGTAATT	6066	False	NA	NA	False	ATTAAA	-14	NA	22926520	22929459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_22926631_22927337_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329
transcript_21435.known	chr16	+	2208	11	FSM	ENSMUSG00000022884.17	ENSMUST00000023599.13	2208	11	0	0	0	0	multi-exon	FALSE	canonical	3	1278	junction_10	308.304135554488	2027	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	5739	False	NA	NA	False	AATAAA	-18	NA	22926193	22932697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
transcript_21436.known	chr16	+	2708	11	FSM	ENSMUSG00000022884.17	ENSMUST00000077605.12	2708	11	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_10	433.482883168413	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATAGGTGGTCTGGCCATT	6054	False	NA	NA	False	AATAAA	-17	NA	22926508	22932696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100
transcript_21437.known	chr16	+	1965	12	FSM	ENSMUSG00000022884.17	ENSMUST00000123413.8	1965	12	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_11	605.093586095477	394	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTATATTCACTTTATAT	6072	False	NA	NA	False	AATAAA	-1	NA	22926526	22932680	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_22926571_22927337_22927384_22927468_22927602_22927869_22928010_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931100_22931208_22931916
transcript_21438.known	chr16	+	1737	10	FSM	ENSMUSG00000022884.17	ENSMUST00000131871.8	1737	10	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	631.938131836603	786	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGTGGTCTGGCCATTT	6073	False	NA	NA	False	AATAAA	-18	NA	22926527	22932697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_22926571_22927334_22927384_22927468_22927602_22928734_22928904_22928983_22929094_22929329_22929474_22929875_22930014_22930252_22930343_22930566_22930647_22931916
transcript_21439.known	chr16	+	1292	3	FSM	ENSMUSG00000022878.6	ENSMUST00000023593.6	1292	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCAGGGTACAGTCTGTTC	3988	False	NA	NA	False	ATTAAA	-20	NA	22965285	22976778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_22965392_22973966_22974198_22975823
transcript_21440.nnic	chr16	-	2725	4	NNC	ENSMUSG00000022887.10	novel	3786	11	NA	NA	38259	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2.44948974278318	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTGGCTTGAGAGTTTG	NA	False	NA	0	True	AATAAA	-17	NA	23301087	23287112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_23289481_23293623_23293699_23295016_23295155_23300943
transcript_21442.known	chr16	+	4137	7	FSM	ENSMUSG00000033306.16	ENSMUST00000231352.2	4137	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3.1446603773522	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	24212256	24503933	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_24212355_24261530_24261641_24275582_24275693_24378341_24378408_24426865_24427068_24480426_24480540_24500495
transcript_21443.known	chr16	+	2306	8	FSM	ENSMUSG00000022514.15	ENSMUST00000174202.8	2306	8	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_5	3.88087934491604	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTTTCGTAGCATTAATTG	NA	False	NA	NA	False	AATAAA	-22	NA	26400502	26521106	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_26400637_26442904_26442970_26495458_26495745_26498852_26499040_26511494_26511661_26513971_26514044_26517576_26517704_26519837
transcript_21444.known	chr16	+	1779	12	FSM	ENSMUSG00000038127.16	ENSMUST00000239351.2	1779	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	41.9986225669445	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTGCCATTCTGGGAG	NA	False	NA	NA	False	NA	NA	NA	27207618	27265133	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_27207888_27224396_27224460_27225400_27225528_27228073_27228165_27235997_27236116_27240442_27240968_27254311_27254428_27255117_27255163_27255247_27255353_27257050_27257128_27263293_27263401_27264997
transcript_21445.known	chr16	+	7089	11	FSM	ENSMUSG00000038127.16	ENSMUST00000100026.10	7089	11	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_6	12.5415310070182	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGGCCTACTGTTTTCAT	NA	False	NA	13	True	AATAAA	-22	NA	27207618	27270968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_27207888_27224396_27224460_27225400_27225528_27228073_27228165_27235997_27236116_27254311_27254428_27255117_27255163_27255247_27255353_27257050_27257128_27263293_27263401_27264997
transcript_21451.known	chr16	-	3055	2	FSM	ENSMUSG00000051065.10	ENSMUST00000100023.3	3055	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTTGTCATTATTACTT	4797	False	NA	0	True	AATAAA	-24	NA	28748425	28644927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_28647762_28748204
transcript_21453.known	chr16	+	3230	30	FSM	ENSMUSG00000038084.17	ENSMUST00000038867.13	3230	30	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_4	99.4304230950511	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGTACGTGTGTTCCAGG	NA	False	NA	6	True	AATAAA	-16	NA	29398197	29470694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29407640_29407695_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
transcript_21454.nic	chr16	+	3299	30	NIC	ENSMUSG00000038084.17	novel	3230	30	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	253	junction_5	68.2954691456644	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACGTGTGTTCCAGGCAC	NA	False	NA	9	True	AATAAA	-19	NA	29398188	29470697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29416403_29416515_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
transcript_21456.known	chr16	+	6230	29	FSM	ENSMUSG00000038084.17	ENSMUST00000160597.8	6230	29	0	0	0	0	multi-exon	TRUE	canonical	3	145	junction_5	76.2263931339013	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGCTTTCTCCCTACACT	NA	False	NA	NA	False	NA	NA	NA	29398151	29473702	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_29398390_29404835_29405155_29405787_29405885_29407069_29407178_29408498_29408567_29421029_29421084_29424329_29424435_29426500_29426588_29427170_29427285_29429485_29429567_29429671_29429747_29430214_29430287_29430368_29430469_29430724_29430856_29432781_29432855_29432943_29433017_29433866_29433983_29434724_29434790_29435432_29435510_29436939_29437106_29439198_29439352_29439588_29439698_29440282_29440363_29444281_29444423_29447514_29447632_29448443_29448538_29448901_29449013_29467754_29467830_29470571
transcript_21462.nic	chr16	-	518	2	ISM	ENSMUSG00000097313.3	ENSMUST00000232297.2	699	4	-227	31316	11	5540	5prime_fragment	FALSE	canonical	3	93	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATATGTTATTTATAAACAT	NA	False	NA	NA	False	ATTAAA	-19	NA	29765561	29757657	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_-_29757886_29765271
transcript_21463.known	chr16	-	2375	1	FSM	ENSMUSG00000097313.3	ENSMUST00000232356.2	2375	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGGG	NA	False	NA	NA	False	NA	NA	NA	29765572	29763197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_29763200_29765600
transcript_21467.known	chr16	+	344	3	FSM	ENSMUSG00000022528.9	ENSMUST00000160592.3	344	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACGAAAATGCCAGCTG	NA	False	NA	NA	False	AATAAA	-32	NA	29883201	29884398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_29883355_29883462_29883608_29884352
transcript_21469.known	chr16	-	2405	10	FSM	ENSMUSG00000022537.19	ENSMUST00000140402.8	2405	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	4.30618275001691	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGCTCTCGGCTCTCTT	NA	False	NA	NA	False	NA	NA	NA	30369396	30332508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_30333641_30348229_30348389_30356271_30356377_30358206_30358357_30359556_30359728_30362219_30362307_30362494_30362659_30363943_30364038_30366160_30366288_30369180
transcript_21479.known	chr16	-	3180	14	FSM	ENSMUSG00000022538.21	ENSMUST00000117363.9	3180	14	0	0	0	0	multi-exon	FALSE	canonical	2	298	junction_4	64.525303508774	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTCACAGTTAAGAAGGCT	NA	False	NA	NA	False	ATTAAA	-19	NA	30406410	30379311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_30380681_30383463_30383638_30384247_30384328_30386528_30386653_30387922_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
transcript_21490.known	chr16	-	2724	11	FSM	ENSMUSG00000022538.21	ENSMUST00000144666.8	2724	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	184.063684631162	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCAGTTTGGTCTGTTATT	NA	False	NA	NA	False	NA	NA	NA	30406410	30386830	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_30388067_30388146_30388249_30389982_30390355_30392010_30392188_30393363_30393425_30396616_30396816_30399776_30399864_30400873_30400961_30401348_30401470_30404371_30404499_30406255
transcript_21495.known	chr16	-	4078	6	FSM	ENSMUSG00000047714.15	ENSMUST00000060188.14	4078	6	0	0	0	0	multi-exon	FALSE	canonical	3	769	junction_1	115.541161496672	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTCTTTTTAATTA	NA	False	NA	3	True	ATTAAA	-28	NA	31094095	31070354	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_31073552_31077154_31077323_31079391_31079487_31080047_31080126_31084122_31084231_31093663
transcript_215.known	chr1	-	4203	5	FSM	ENSMUSG00000033845.14	ENSMUST00000156816.7	4203	5	0	0	0	0	multi-exon	FALSE	canonical	3	2059	junction_1	113.670576667843	1493	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAACCTTAAAACTCTCCC	1620	False	NA	NA	False	AATAAA	-17	NA	4855962	4843433	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_4847025_4847747_4847872_4852790_4852957_4854173_4854329_4855795
transcript_21500.known	chr16	-	958	5	FSM	ENSMUSG00000047714.15	ENSMUST00000115233.2	958	5	0	0	0	0	multi-exon	FALSE	canonical	3	993	junction_1	34.2746261832277	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTTGCTTTGTTTTTTG	NA	False	NA	73	True	ATTAAA	-38	NA	31093810	31076792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_31077323_31079391_31079487_31080047_31080126_31084122_31084231_31093663
transcript_21501.known	chr16	-	2074	6	FSM	ENSMUSG00000022548.15	ENSMUST00000130560.8	2074	6	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	47.7887015935775	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTAGCTTCCAGTTT	8496	False	NA	NA	False	NA	NA	NA	31133626	31115009	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216_31133287_31133369
transcript_21502.known	chr16	-	1070	5	FSM	ENSMUSG00000022548.15	ENSMUST00000115230.2	1070	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	68.1725751310598	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGTGTTTCCTGTGGA	8500	False	NA	-4	True	AATAAA	-12	NA	31133622	31115939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133369
transcript_21503.nnic	chr16	-	826	3	NNC	ENSMUSG00000022548.15	novel	1070	5	NA	NA	2098	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	75	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTGTGTTTCCTGTGGA	NA	False	NA	-4	True	AATAAA	-12	NA	31120165	31115939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_31116395_31119212_31119302_31119883
transcript_21504.known	chr16	-	979	5	FSM	ENSMUSG00000022548.15	ENSMUST00000023207.15	979	5	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	27.2614654778499	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTTGCTAGCCCAATAAT	8710	False	NA	-38	True	NA	NA	NA	31133412	31115973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_31116395_31119212_31119302_31122227_31122350_31129831_31129983_31133216
transcript_21505.known	chr16	+	1711	7	FSM	ENSMUSG00000046598.16	ENSMUST00000089759.9	1711	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	185.763888369678	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTGTGTGCATGAAA	5509	False	NA	25	True	AGTAAA	-15	NA	31241097	31276315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_31241331_31256809_31256936_31265409_31265483_31266370_31266482_31268641_31268784_31273845_31273999_31275442
transcript_21506.known	chr16	+	3122	7	FSM	ENSMUSG00000046598.16	ENSMUST00000115227.10	3122	7	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_4	18.4812217008388	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGCAGAGTGGCTTGGAAT	NA	False	NA	17	True	AATAAA	-17	NA	31247565	31277719	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_31247806_31256809_31256936_31265409_31265483_31266370_31266482_31268641_31268784_31273845_31273999_31275442
transcript_21509.known	chr16	-	1901	1	FSM	ENSMUSG00000086645.3	ENSMUST00000182690.2	1901	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTGTCACATGACTTTAAT	NA	False	NA	NA	False	AATAAA	-14	NA	31248594	31246693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_31246700_31248600
transcript_21512.known	chr16	+	2070	4	FSM	ENSMUSG00000022774.14	ENSMUST00000023460.7	2070	4	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_1	12.2565175405668	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGTCTATTTCCTCGC	NA	False	NA	4	True	AATAAA	-15	NA	31767330	31777290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_31767546_31772942_31773125_31775108_31775248_31775756
transcript_21514.known	chr16	-	3370	10	FSM	ENSMUSG00000022772.13	ENSMUST00000023457.13	3370	10	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_9	18.3168275866621	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTTGGATTTTTTTTTC	NA	False	NA	NA	False	CATAAA	-22	NA	31821981	31781323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_31782356_31783087_31783139_31784562_31784647_31787617_31787756_31796497_31796576_31802081_31802130_31802310_31802450_31802585_31802692_31807757_31809284_31821813
transcript_21515.known	chr16	-	5741	15	FSM	ENSMUSG00000022781.9	ENSMUST00000023467.9	5741	15	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_8	23.9404021925877	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAAATTTCCATTTTTGTC	NA	False	NA	-10	True	AATAAA	-22	NA	31898160	31835107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_31839085_31840591_31840730_31841906_31842104_31846529_31846630_31850401_31850520_31852604_31852718_31853712_31853762_31856062_31856127_31858616_31858750_31860285_31860394_31861963_31861996_31862670_31862819_31863298_31863400_31870993_31871202_31897905
transcript_2152.known	chr1	-	2910	17	FSM	ENSMUSG00000026355.12	ENSMUST00000027601.11	2910	17	0	0	0	0	multi-exon	FALSE	canonical	3	2842	junction_6	235.478734443261	1205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTGTTGGATTCATTTC	NA	False	NA	-21	True	AATAAA	-17	NA	128287401	128259326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_128259789_128261253_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
transcript_21522.nic	chr16	-	1196	7	NIC	ENSMUSG00000023791.19	novel	993	6	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_5	171.687377391454	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGGTTAGTTTGTCTT	NA	False	NA	-4	True	AATAAA	-26	NA	31918599	31903237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31914370_31914527_31915817_31915882_31918287
transcript_21527.known	chr16	-	963	6	FSM	ENSMUSG00000023791.19	ENSMUST00000155966.8	963	6	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_5	129.408500493592	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGCTCTTTTCAGAACT	NA	False	NA	-22	True	AATAAA	-8	NA	31918546	31903255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918293
transcript_21528.known	chr16	-	818	6	FSM	ENSMUSG00000023791.19	ENSMUST00000232321.2	818	6	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_5	141.720287891325	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTAGTTTGTCTTCATT	NA	False	NA	0	True	AATAAA	-30	NA	31918558	31903233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31915817_31915882_31918472
transcript_21531.nnic	chr16	-	976	5	NIC	ENSMUSG00000023791.19	novel	993	6	NA	NA	-41	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_4	167.537309277665	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGGTTAGTTTGTCTT	NA	False	NA	-4	True	AATAAA	-26	NA	31918599	31903237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_31903445_31904054_31904156_31906111_31906326_31911161_31911304_31918287
transcript_21534.known	chr16	-	713	5	FSM	ENSMUSG00000023791.19	ENSMUST00000147688.8	713	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	176.233332545237	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGAACCTAATAAATGAGAC	NA	False	NA	-43	True	NA	NA	NA	31918525	31903276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_31903445_31904054_31904156_31911161_31911304_31915817_31915882_31918287
transcript_21536.known	chr16	-	675	4	FSM	ENSMUSG00000023791.19	ENSMUST00000143011.8	675	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	202.902822936389	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTAACTGGTTAGTTTG	NA	False	NA	-8	True	AATAAA	-22	NA	31918522	31903241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_31903445_31904054_31904156_31911161_31911304_31918293
transcript_21540.known	chr16	+	1718	4	FSM	ENSMUSG00000035790.16	ENSMUST00000115168.9	1718	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	4.96655480858378	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGCTTTTCTTCAGTCTG	6492	False	NA	26	True	AATAAA	-26	NA	31918617	31926887	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_31918930_31921784_31921863_31922701_31922866_31925723
transcript_21541.known	chr16	-	2548	3	FSM	ENSMUSG00000052384.15	ENSMUST00000099991.11	2548	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCTTGTGTAATGTCCT	NA	False	NA	NA	False	AATAAA	-33	NA	31984403	31961602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_31963824_31966370_31966492_31984197
transcript_21542.known	chr16	-	4179	3	FSM	ENSMUSG00000035764.6	ENSMUST00000042732.6	4179	3	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_2	4	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGGTAGTCCATGTCA	7823	False	NA	2	True	ATTAAA	-17	NA	32065976	32048929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_32052087_32057217_32057575_32065311
transcript_21544.known	chr16	+	1153	3	FSM	ENSMUSG00000022787.11	ENSMUST00000178573.8	1153	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	36.5	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACCAACAGTAATTTTG	NA	False	NA	9	True	AATAAA	-10	NA	32066044	32075892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32066086_32070640_32071137_32075276
transcript_21545.known	chr16	+	1394	3	FSM	ENSMUSG00000022787.11	ENSMUST00000023474.4	1394	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	52	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTAATTTTGGTTTTTTTT	NA	False	NA	18	True	AATAAA	-19	NA	32066070	32075901	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32066344_32070640_32071137_32075276
transcript_21546.nnic	chr16	+	1984	6	NNC	ENSMUSG00000014074.18	novel	4460	6	NA	NA	-20	15	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	8.49470423263812	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTTTTGTCATTTGAAT	NA	False	NA	28	True	AATAAA	-29	NA	32096256	32119739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_32097234_32101128_32101206_32104187_32104368_32107936_32108059_32110720_32110744_32119134
transcript_21547.known	chr16	+	4460	6	FSM	ENSMUSG00000014074.18	ENSMUST00000171474.2	4460	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	6.9108610172684	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAATTGGCTCTCATG	NA	False	NA	NA	False	ATTAAA	-10	NA	32096278	32120252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32097234_32101128_32101206_32104187_32104368_32107936_32108059_32110720_32110800_32117205
transcript_21548.nic	chr16	+	1311	4	ISM	ENSMUSG00000014074.18	ENSMUST00000014218.15	3932	6	-22	11711	-20	1	5prime_fragment	TRUE	canonical	3	16	junction_3	3.09120616516523	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAAAATACAAGTAAAC	NA	False	NA	NA	False	NA	NA	NA	32096256	32108013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_+_32097234_32101128_32101206_32104187_32104368_32107936
transcript_21550.known	chr16	+	10313	11	FSM	ENSMUSG00000053774.10	ENSMUST00000115151.5	10313	11	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_8	18.7480665669823	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTTTTGAGTCATTGTT	8252	False	NA	16	True	AATAAA	-18	NA	32151074	32212565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32151179_32171616_32171765_32178825_32178894_32186161_32186228_32188132_32188246_32191211_32191359_32194044_32194136_32194714_32194843_32200079_32200474_32200583_32200664_32203591
transcript_21554.known	chr16	+	4384	10	FSM	ENSMUSG00000053774.10	ENSMUST00000232137.2	4384	10	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	51.2071561357021	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTTGCCTTGTGTGCTGT	8263	False	NA	NA	False	NA	NA	NA	32151085	32206713	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32151179_32171616_32171765_32178825_32178894_32188132_32188246_32191211_32191359_32194044_32194136_32194714_32194843_32200079_32200474_32200583_32200664_32203591
transcript_21555.nnic	chr16	+	688	6	NNC	ENSMUSG00000014075.16	novel	838	5	NA	NA	-7	-197	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	122.726688214096	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTAAGTTGTATATGTT	NA	False	NA	17	True	AATAAA	-28	NA	32238556	32247716	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_32238746_32241637_32241772_32244058_32244129_32244971_32245060_32245675_32245740_32247573
transcript_21556.nnic	chr16	+	952	6	NNC	ENSMUSG00000014075.16	novel	838	5	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	122.726688214096	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGAATAGTTTTTATG	NA	False	NA	9	True	AATAAA	-21	NA	32238493	32247917	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_32238746_32241637_32241772_32244058_32244129_32244971_32245060_32245675_32245740_32247573
transcript_21557.known	chr16	+	838	5	FSM	ENSMUSG00000014075.16	ENSMUST00000014220.15	838	5	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_3	20.9568008054665	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGAATAGTTTTTATG	NA	False	NA	9	True	AATAAA	-21	NA	32238519	32247917	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32238746_32241637_32241772_32244058_32244129_32245675_32245740_32247573
transcript_21562.known	chr16	+	720	4	FSM	ENSMUSG00000014075.16	ENSMUST00000080316.8	720	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	127.027556065603	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATGTCATGAATAGTTTT	NA	False	NA	5	True	AATAAA	-17	NA	32238563	32247913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32238746_32241637_32241772_32245675_32245740_32247573
transcript_21564.known	chr16	+	4789	9	FSM	ENSMUSG00000005615.16	ENSMUST00000079791.11	4789	9	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	11.3880419739304	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTCCTGTGGTTTTGACC	2489	False	NA	22	True	AATAAA	-27	NA	32249741	32293888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32249850_32270522_32270650_32274029_32274130_32280818_32280936_32281848_32282001_32285257_32285337_32285895_32286039_32288868_32289058_32290114
transcript_21567.known	chr16	-	2618	9	FSM	ENSMUSG00000035699.9	ENSMUST00000042042.9	2618	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	5.50993421013355	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTCTTTGAACTGTGT	NA	False	NA	NA	False	TTTAAA	-34	NA	32306697	32293321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_32294697_32295190_32295297_32295984_32296132_32296365_32296478_32297122_32297282_32297533_32297608_32298467_32298623_32304952_32305048_32306302
transcript_21569.nic	chr16	+	1169	8	ISM	ENSMUSG00000005615.16	ENSMUST00000079791.11	4789	9	-24	4701	-21	-345	5prime_fragment	FALSE	canonical	3	61	junction_1	11.4481974340852	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGCAGCCCTATATTTG	2465	False	NA	NA	False	NA	NA	NA	32249717	32289187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_+_32249850_32270522_32270650_32274029_32274130_32280818_32280936_32281848_32282001_32285257_32285337_32285895_32286039_32288868
transcript_21571.known	chr16	+	4890	19	FSM	ENSMUSG00000022797.17	ENSMUST00000023486.15	4890	19	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_9	25.3592094942417	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCGGACTCATTTCATA	7957	False	NA	18	True	AATAAA	-19	NA	32427737	32451612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32427855_32431985_32432045_32433383_32433586_32434010_32434213_32435566_32435717_32435914_32436018_32437035_32437150_32437450_32437550_32437854_32437995_32439183_32439342_32439992_32440116_32441874_32441961_32442189_32442254_32443186_32443255_32443585_32443645_32443801_32443884_32445366_32445589_32447293_32447435_32448911
transcript_21578.known	chr16	+	4312	9	FSM	ENSMUSG00000022800.15	ENSMUST00000023489.11	4312	9	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_4	65.3632876697615	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATACAAAGAATTCCATATAT	NA	False	NA	NA	False	ATTAAA	-14	NA	32698150	32729245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32718841_32719247_32719310_32721002_32721078_32722788_32722916_32725901
transcript_21583.known	chr16	+	2262	8	FSM	ENSMUSG00000022800.15	ENSMUST00000232300.2	2262	8	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_4	66.7529713471503	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGTTGACTTCTGTCCT	NA	False	NA	15	True	AATAAA	-22	NA	32698176	32726814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32698367_32704493_32704623_32711634_32711784_32715454_32715568_32718743_32719310_32721002_32721078_32722788_32722916_32725901
transcript_21585.known	chr16	-	5618	11	FSM	ENSMUSG00000035578.17	ENSMUST00000115100.9	5618	11	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_9	25.6242073048124	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGTGGAAACGGGTTTAA	1172	False	NA	NA	False	ATTAAA	-8	NA	32876560	32833052	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_32837434_32839810_32839913_32840883_32841016_32849384_32849460_32851144_32851307_32855910_32855993_32861133_32861263_32865889_32866072_32870221_32870484_32873993_32874065_32876520
transcript_21586.nnic	chr16	-	2518	8	NNC	ENSMUSG00000035578.17	novel	5618	11	NA	NA	6355	1206	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_7	7.43406390357582	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACTGCAATGAAAAAGGCT	6075	False	NA	NA	False	AATAAA	-18	NA	32863885	32835783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_32837434_32839810_32839913_32840883_32841016_32849384_32849460_32851144_32851307_32855910_32855993_32861133_32861263_32863699
transcript_21588.nnic	chr16	-	1312	8	NNC	ENSMUSG00000035578.17	novel	5618	11	NA	NA	6355	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_7	7.43406390357582	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCACCTAGCATCATGTG	6075	False	NA	2	True	ATTAAA	-29	NA	32863885	32836989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_32837434_32839810_32839913_32840883_32841016_32849384_32849460_32851144_32851307_32855910_32855993_32861133_32861263_32863699
transcript_21590.known	chr16	-	442	4	FSM	ENSMUSG00000035578.17	ENSMUST00000133219.2	442	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	27.6043474836845	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAGAAGTAACCAGTTTC	NA	False	NA	NA	False	GATAAA	-43	NA	32844307	32837319	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_32837434_32839810_32839913_32840883_32841016_32844213
transcript_21591.known	chr16	-	713	3	FSM	ENSMUSG00000035578.17	ENSMUST00000126793.2	713	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCTAAACATTTCGGTAAA	1177	False	NA	NA	False	NA	NA	NA	32876555	32869876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_32870484_32873993_32874065_32876520
transcript_21594.known	chr16	+	491	5	FSM	ENSMUSG00000060636.15	ENSMUST00000078804.12	491	5	0	0	0	0	multi-exon	FALSE	canonical	3	3858	junction_1	2402.68870226669	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGTTTCTCTTTGTTAAG	NA	False	NA	34	True	AATAAA	-45	NA	32876822	32880559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32876881_32877505_32877549_32877759_32877913_32879048_32879194_32880467
transcript_21595.known	chr16	+	443	5	FSM	ENSMUSG00000060636.15	ENSMUST00000232188.2	443	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	3515.29062632096	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTGTATTTTTTTTTC	NA	False	NA	0	True	AATAAA	-15	NA	32876868	32880525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32876926_32877505_32877536_32877759_32877913_32879048_32879194_32880467
transcript_21596.known	chr16	+	510	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115079.8	510	5	0	0	0	0	multi-exon	FALSE	canonical	3	3184	junction_1	2675.04705566089	2035	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGTCCTAAATTGAGTT	NA	False	NA	21	True	AATAAA	-36	NA	32876835	32880546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32876926_32877505_32877549_32877759_32877913_32879048_32879194_32880467
transcript_21597.known	chr16	+	500	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115078.8	500	5	0	0	0	0	multi-exon	FALSE	canonical	3	927	junction_1	3609.33805392346	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCACATCTGTCC	NA	False	NA	10	True	AATAAA	-25	NA	32876896	32880535	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32876988_32877505_32877549_32877759_32877913_32879048_32879194_32880467
transcript_21599.known	chr16	+	519	5	FSM	ENSMUSG00000060636.15	ENSMUST00000115076.8	519	5	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_1	3846.56847072816	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTGTCCTAAATTGAGT	NA	False	NA	20	True	AATAAA	-35	NA	32877175	32880545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32877276_32877505_32877549_32877759_32877913_32879048_32879194_32880467
transcript_21602.known	chr16	+	2858	3	FSM	ENSMUSG00000060636.15	ENSMUST00000133785.2	2858	3	0	0	0	0	multi-exon	FALSE	canonical	3	3858	junction_1	3305	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCTGTCCTAAATTGAGT	NA	False	NA	20	True	AATAAA	-35	NA	32876851	32880545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32876881_32877505_32877549_32877759
transcript_21604.known	chr16	+	518	4	FSM	ENSMUSG00000060636.15	ENSMUST00000115075.2	518	4	0	0	0	0	multi-exon	FALSE	canonical	3	8092	junction_3	1051.6733755729	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTGTATTTTTTTTTCA	NA	False	NA	1	True	AATAAA	-16	NA	32877387	32880526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_32877549_32877759_32877913_32879048_32879194_32880467
transcript_21608.known	chr16	-	665	2	FSM	ENSMUSG00000097318.3	ENSMUST00000231849.2	665	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGAATTCTCTCCTTG	NA	False	NA	-2	True	ATTAAA	-16	NA	33201045	33200223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_33200729_33200885
transcript_21609.known	chr16	-	737	2	FSM	ENSMUSG00000097318.3	ENSMUST00000180923.2	737	2	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTGGAATTCTCTCCTT	NA	False	NA	-3	True	ATTAAA	-15	NA	33201097	33200224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_33200750_33200885
transcript_21610.known	chr16	+	9830	9	FSM	ENSMUSG00000022811.18	ENSMUST00000165418.9	9830	9	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_3	9.03811374126261	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTAAAGCTGAAACAGCTG	NA	False	NA	NA	False	TTTAAA	-33	NA	33201205	33324733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_33201398_33241690_33241773_33247563_33247700_33254995_33255345_33277245_33277372_33287224_33287349_33288469_33288554_33315714_33315834_33316115
transcript_21613.known	chr16	+	2656	14	FSM	ENSMUSG00000035506.17	ENSMUST00000121925.8	2656	14	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	11.5650974613248	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTATTTTTTATTATT	NA	False	NA	9	True	AATAAA	-19	NA	33337697	33483778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_33337866_33338649_33338747_33355233_33355381_33361221_33361414_33371252_33371485_33410621_33410736_33426535_33426624_33428514_33428603_33437477_33437625_33444923_33445546_33466932_33467031_33470187_33470306_33478566_33478628_33483294
transcript_21618.known	chr16	-	3283	5	FSM	ENSMUSG00000022814.7	ENSMUST00000131990.2	3283	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	482.354123025812	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAACATCCTCTGTAG	8675	False	NA	NA	False	NA	NA	NA	33787373	33775163	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33787195
transcript_21619.known	chr16	-	3484	6	FSM	ENSMUSG00000022814.7	ENSMUST00000023510.7	3484	6	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_1	75.962095811003	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGTCTCCTGCCTCT	8640	False	NA	NA	False	NA	NA	NA	33787408	33775151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_33777306_33779422_33779538_33780546_33780723_33781938_33782611_33784141_33784296_33787195
transcript_21620.known	chr16	-	3857	17	FSM	ENSMUSG00000061751.17	ENSMUST00000114966.8	3857	17	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_13	10.0343161201947	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGAGGTCAAAGGTTAGT	NA	False	NA	-1	True	AATAAA	-21	NA	33917460	33833506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_33834052_33834327_33834585_33836761_33837001_33848307_33848480_33849009_33849196_33851923_33852002_33852787_33852839_33853876_33853970_33854825_33854913_33855205_33855276_33855422_33855527_33855862_33855930_33860248_33860380_33870199_33870293_33873929_33874035_33875201_33875486_33916165
transcript_21621.known	chr16	-	2690	16	FSM	ENSMUSG00000061751.17	ENSMUST00000232157.2	2690	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	6.74157910944379	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCATGTTTTAATGAGGTCA	NA	False	NA	-10	True	AATAAA	-12	NA	33916398	33833515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_33834052_33834327_33834582_33836761_33837001_33848307_33848480_33849009_33849196_33851923_33852002_33852787_33852839_33853876_33853970_33854825_33854913_33855205_33855276_33855422_33855527_33855862_33855930_33860248_33860380_33873929_33874035_33875201_33875486_33916165
transcript_21622.known	chr16	-	615	1	FSM	ENSMUSG00000116835.2	ENSMUST00000231993.2	615	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACGTGATATTTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	33827827	33827212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_33827200_33827800
transcript_21623.known	chr16	+	3999	13	FSM	ENSMUSG00000022833.8	ENSMUST00000231609.2	3999	13	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_6	18.9487613198213	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTACTTATTTTGA	NA	False	NA	15	True	AATATA	-24	NA	34511101	34545572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_34511202_34515960_34516014_34517182_34517256_34517475_34517546_34517636_34517757_34525198_34525418_34525530_34525626_34526756_34527268_34529893_34530036_34535707_34535779_34541808_34542028_34542106_34542240_34543379
transcript_21628.known	chr16	+	3598	7	FSM	ENSMUSG00000035376.11	ENSMUST00000061156.10	3598	7	0	0	0	0	multi-exon	FALSE	canonical	3	1242	junction_3	97.2996517065823	871	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGATCTGGAGCCATGT	NA	False	NA	NA	False	AATAAA	-20	NA	34842797	34929547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_34843006_34846194_34846313_34869089_34869109_34895975_34896065_34920125_34920248_34922315_34922495_34926684
transcript_21644.known	chr16	-	3992	7	FSM	ENSMUSG00000034473.15	ENSMUST00000043521.5	3992	7	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	6.0736223860962	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGAACCTTTGCCCACTTT	NA	False	NA	NA	False	ATTAAA	-33	NA	35184288	35131500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_35134658_35139173_35139240_35149867_35149984_35167968_35168164_35169200_35169365_35181930_35182130_35184193
transcript_21650.nnic	chr16	-	1750	17	NNC	ENSMUSG00000022844.9	novel	1809	17	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_16	132.890697567587	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGGTAGAGTATGTTT	NA	False	NA	-10	True	AATAAA	-14	NA	35311275	35217681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_35217909_35218646_35218782_35224382_35224454_35228003_35228135_35230663_35230825_35231296_35231368_35243235_35243373_35250102_35250175_35250262_35250355_35258482_35258551_35269772_35269834_35273820_35273914_35276465_35276512_35276831_35276916_35284704_35284793_35286900_35287028_35311189
transcript_21652.known	chr16	-	1809	17	FSM	ENSMUSG00000022844.9	ENSMUST00000023550.9	1809	17	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_7	56.9566378374812	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTGGTAGAGTATGTTT	NA	False	NA	-10	True	AATAAA	-14	NA	35311243	35217681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_35217909_35218646_35218782_35224382_35224454_35228003_35228135_35230663_35230825_35231296_35231368_35243235_35243373_35250102_35250175_35250262_35250355_35258482_35258551_35269772_35269834_35273820_35273914_35276465_35276512_35276831_35276916_35284704_35284793_35286900_35287028_35311098
transcript_21653.known	chr16	-	236	1	FSM	ENSMUSG00000052192.6	ENSMUST00000143451.2	236	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAGCAGAAGAAATCGGGA	NA	False	NA	-55	True	NA	NA	NA	35393926	35393690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_35393700_35393900
transcript_21656.known	chr16	+	4680	9	FSM	ENSMUSG00000022849.6	ENSMUST00000023555.6	4680	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	251.189669373563	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGCTTTAATTAATGGAT	5436	False	NA	NA	False	AATAAA	-45	NA	35590776	35648847	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634425_35634699_35634780_35637521_35637694_35639048_35639133_35645058_35645170_35645252
transcript_21662.known	chr16	+	1703	8	FSM	ENSMUSG00000022849.6	ENSMUST00000231579.2	1703	8	0	0	0	0	multi-exon	TRUE	canonical	3	531	junction_3	35.6118531058502	671	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTCCAGCCACTTCCAAAT	5404	False	NA	107	True	NA	NA	NA	35590744	35645918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_35590910_35607559_35607746_35621906_35622089_35634287_35634425_35637521_35637694_35639048_35639133_35645058_35645170_35645252
transcript_21676.known	chr16	+	5039	14	FSM	ENSMUSG00000022905.13	ENSMUST00000004054.13	5039	14	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_10	42.2312596300516	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAACAGGTTTTCCTTGGG	NA	False	NA	26	True	AATAAA	-39	NA	35803684	35857501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_35803879_35820551_35820686_35823212_35823321_35829685_35829786_35833262_35833358_35839627_35839760_35840525_35840615_35841057_35841158_35841854_35842019_35843544_35843624_35849891_35850018_35851539_35851668_35853621_35853801_35854090
transcript_21682.known	chr16	+	3548	11	FSM	ENSMUSG00000022906.16	ENSMUST00000114878.8	3548	11	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_5	7.49399759807808	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGCTGTGAATCGTGAATG	NA	False	NA	13	True	AATAAA	-19	NA	35758839	35792975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_35759431_35761402_35761506_35763738_35763773_35767870_35768725_35773932_35774149_35777176_35777396_35780373_35780432_35784344_35784735_35788019_35788157_35789960_35790136_35792204
transcript_21684.known	chr16	-	5309	5	FSM	ENSMUSG00000049502.18	ENSMUST00000081933.14	5309	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	7.25861557047899	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTTTCCCTCATTC	9994	False	NA	6	True	AATAAA	-24	NA	35759521	35746880	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_35749739_35751742_35751961_35752645_35754170_35756746_35756998_35759063
transcript_21688.known	chr16	-	718	5	FSM	ENSMUSG00000003955.9	ENSMUST00000004057.9	718	5	0	0	0	0	multi-exon	FALSE	canonical	3	971	junction_1	40.7982842776507	554	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATAGTATTATCTCTTC	NA	False	NA	80	True	NA	NA	NA	35891885	35864130	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_35864462_35866748_35866858_35870211_35870321_35872655_35872779_35891839
transcript_2169.known	chr1	-	4355	16	FSM	ENSMUSG00000026355.12	ENSMUST00000190495.2	4355	16	0	0	0	0	multi-exon	FALSE	canonical	3	2842	junction_5	205.687940552889	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGTCTGTTGGATTCAT	NA	False	NA	-24	True	AATAAA	-14	NA	128287384	128259329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_128261394_128262499_128262656_128263466_128263603_128265852_128266015_128267086_128267216_128269021_128269178_128271147_128271256_128272033_128272176_128273608_128273751_128276105_128276257_128276661_128276808_128277040_128277207_128279169_128279420_128281196_128281308_128283249_128283397_128287195
transcript_21696.known	chr16	+	1073	5	FSM	ENSMUSG00000075229.12	ENSMUST00000164916.9	1073	5	0	0	0	0	multi-exon	FALSE	canonical	3	859	junction_1	27.9284800875379	1217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATTTATTTGGTGACTTT	NA	False	NA	25	True	ATTAAA	-22	NA	35892054	35912490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_35892508_35903060_35903187_35905386_35905534_35910270_35910331_35912203
transcript_21699.known	chr16	+	391	4	FSM	ENSMUSG00000075229.12	ENSMUST00000163352.9	391	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	405.618320866085	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTCTGAGCCAGCAGGC	NA	False	NA	NA	False	NA	NA	NA	35892449	35912329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_35892508_35905386_35905534_35910270_35910331_35912203
transcript_21700.known	chr16	+	392	3	FSM	ENSMUSG00000075229.12	ENSMUST00000231468.2	392	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	434	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGTACATATTTATTT	NA	False	NA	16	True	ATTAAA	-13	NA	35892453	35912481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_35892508_35910270_35910331_35912203
transcript_21701.known	chr16	+	3042	8	FSM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	99.4786409235671	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAACAGAAAAAAAAAAAAAA	NA	False	NA	69	True	NA	NA	NA	36514339	36547166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_36514577_36528611_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
transcript_21706.nic	chr16	+	2350	7	ISM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	14238	489	-7322	-426	3prime_fragment	FALSE	canonical	3	275	junction_4	15.8683822601914	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGAGTTTCTACTTCTAT	NA	False	NA	20	True	AATAAA	-16	NA	36528577	36546677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
transcript_21707.nic	chr16	+	2781	7	ISM	ENSMUSG00000022900.15	ENSMUST00000023617.13	3042	8	14239	57	-7321	0	3prime_fragment	FALSE	canonical	3	275	junction_4	15.8683822601914	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTTTGGCAGAGGT	NA	False	NA	12	True	ATTAAA	-24	NA	36528578	36547109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_+_36528783_36529840_36529991_36535862_36535983_36536468_36536616_36541899_36542032_36542244_36543042_36545878
transcript_21709.known	chr16	+	2257	15	FSM	ENSMUSG00000022837.15	ENSMUST00000023535.4	2257	15	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_14	52.2779073016196	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGTTGTCATGTTATT	NA	False	NA	44	True	AATAAA	-11	NA	36648769	36693075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
transcript_21710.nic	chr16	+	2241	15	NIC	ENSMUSG00000022837.15	novel	2257	15	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	69.4050518657669	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGTTGTCATGTTATT	NA	False	NA	44	True	AATAAA	-11	NA	36648732	36693075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36687920_36688053_36691812_36691970_36692553
transcript_21714.nic	chr16	+	1738	13	NIC	ENSMUSG00000022837.15	novel	2257	15	NA	NA	-58	0	combination_of_known_junctions	FALSE	canonical	3	130	junction_12	42.1751473685102	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAAGTCTGAAAGCATG	NA	False	NA	15	True	NA	NA	NA	36648688	36679934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_36648855_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36679723
transcript_21715.nic	chr16	+	1641	13	NIC	ENSMUSG00000022837.15	novel	2797	14	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	67.3747294366862	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTCAAGTCTGAAAGCATG	NA	False	NA	15	True	NA	NA	NA	36648732	36679934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_36648802_36649365_36649436_36651863_36651977_36652190_36652354_36655877_36656008_36660231_36660326_36663720_36663821_36667842_36668022_36669988_36670099_36671546_36671657_36676652_36676796_36678816_36678966_36679723
transcript_2172.known	chr1	-	2175	16	FSM	ENSMUSG00000026356.16	ENSMUST00000027602.15	2175	16	0	0	0	0	multi-exon	TRUE	canonical	3	1712	junction_8	135.919976456737	1949	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTGTGTGACTTT	NA	False	NA	-4	True	AATAAA	-14	NA	128345096	128291443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_128292063_128294434_128294507_128294657_128294770_128296101_128296183_128297229_128297273_128299876_128300024_128301673_128301822_128303914_128304050_128306502_128306615_128314853_128314914_128316855_128316937_128319007_128319111_128333102_128333206_128341396_128341490_128343090_128343149_128344888
transcript_21722.known	chr16	-	1030	6	FSM	ENSMUSG00000022838.15	ENSMUST00000114829.9	1030	6	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_4	1.32664991614216	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGGTATTCTCATGTG	8200	False	NA	NA	False	AATAAA	-23	NA	36648623	36614105	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_36614289_36620948_36621207_36628376_36628523_36630833_36630971_36645019_36645115_36648412
transcript_21723.known	chr16	-	667	4	FSM	ENSMUSG00000022838.15	ENSMUST00000147053.2	667	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	4.49691252107735	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGAGAATAAATATTCCTA	8250	False	NA	NA	False	AAAACA	-30	NA	36648573	36614186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_36614289_36620948_36621207_36628376_36628523_36648412
transcript_21725.nnic	chr16	+	976	6	NNC	ENSMUSG00000034206.16	novel	7386	26	NA	NA	-20	1	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_5	12.2474487139159	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTATTTATTTGTTTA	3728	False	NA	NA	False	ATTAAA	-17	NA	36832127	36837953	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_36832422_36833468_36833649_36835440_36835572_36836674_36836771_36837560_36837718_36837835
transcript_21726.nic	chr16	+	1093	5	ISM	ENSMUSG00000034206.16	ENSMUST00000183112.8	7386	26	-20	77402	-20	0	5prime_fragment	FALSE	canonical	3	18	junction_3	8.6421930087218	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTATTTATTTGTTT	3728	False	NA	NA	False	ATTAAA	-16	NA	36832127	36837952	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_+_36832422_36833468_36833649_36835440_36835572_36836674_36836771_36837560
transcript_21727.nnic	chr16	-	3173	5	NNC	ENSMUSG00000022828.11	novel	3084	5	NA	NA	74	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_4	117.992584512757	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTGGTTATACTCACTAA	NA	False	NA	NA	False	AATAAA	-36	NA	37360064	37330151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_37332182_37336080_37336323_37343112_37343315_37356082_37356556_37359838
transcript_21728.known	chr16	-	3084	5	FSM	ENSMUSG00000022828.11	ENSMUST00000023525.9	3084	5	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_4	13.7204227340122	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGTGGTTATACTCACTAA	NA	False	NA	NA	False	AATAAA	-36	NA	37360151	37330151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_37332182_37336080_37336323_37343112_37343315_37356082_37356556_37360014
transcript_21730.known	chr16	+	2031	8	FSM	ENSMUSG00000022827.15	ENSMUST00000023524.13	2031	8	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_4	11.0896163971859	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGTCATTTCTTTTAA	NA	False	NA	NA	False	ATTAAA	-20	NA	37360246	37392747	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_37360323_37362208_37362301_37377182_37377313_37380356_37380472_37383977_37384129_37387681_37387754_37390749_37390789_37391391
transcript_21731.known	chr16	+	1960	8	FSM	ENSMUSG00000022827.15	ENSMUST00000130028.2	1960	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	38.0767216904748	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACACAGTGTCATTTCTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	37360261	37392744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_37360323_37362208_37362301_37377182_37377313_37380356_37380472_37384030_37384129_37387681_37387754_37390749_37390789_37391391
transcript_21732.known	chr16	-	971	3	FSM	ENSMUSG00000022820.5	ENSMUST00000023514.4	971	3	0	0	0	0	multi-exon	FALSE	canonical	3	6062	junction_1	348	408	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAAGCTGGAACGGGAAAG	NA	False	NA	NA	False	NA	NA	NA	37474815	37467531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_37468082_37469375_37469523_37474541
transcript_21734.known	chr16	+	3789	11	FSM	ENSMUSG00000022816.12	ENSMUST00000114763.3	3789	11	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_9	10.1607086367044	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATAATAGTTGGTTTC	5151	False	NA	NA	False	NA	NA	NA	37597234	37656876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_37597515_37597655_37597713_37636067_37636173_37639265_37639396_37641517_37641551_37642962_37643094_37647087_37647207_37649068_37649182_37649475_37649587_37651918_37651996_37654243
transcript_21739.nnic	chr16	-	1248	7	NNC	ENSMUSG00000022809.5	novel	2553	9	NA	NA	40666	-687	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	2.28521820013368	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCAGGTGTTAGGTGGGA	NA	False	NA	NA	False	AATAAA	-19	NA	38074520	38069371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_38069752_38071134_38071241_38071489_38071607_38071755_38071899_38073189_38073465_38074101_38074290_38074481
transcript_2174.known	chr1	-	2533	10	FSM	ENSMUSG00000026399.13	ENSMUST00000027650.13	2533	10	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	13.0705587551887	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTTGTCTCCTGTAATA	NA	False	NA	NA	False	TTTAAA	-45	NA	130390481	130366763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_130368117_130375355_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
transcript_21741.nnic	chr16	-	1537	8	NNC	ENSMUSG00000022805.18	novel	3048	17	NA	NA	23137	0	at_least_one_novel_splicesite	TRUE	canonical	3	10	junction_6	14.2571142284282	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGACGTTGTTTGTAAAGCT	NA	False	NA	-3	True	AATAAA	-16	NA	38139037	38118115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_38118658_38122329_38122422_38122978_38123128_38125140_38125363_38127077_38127225_38128443_38128516_38131353_38131471_38138841
transcript_21748.known	chr16	+	444	3	FSM	ENSMUSG00000046516.11	ENSMUST00000050273.9	444	3	0	0	0	0	multi-exon	FALSE	canonical	3	2901	junction_2	455	2205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTGTTGTGTTTCTTTT	NA	False	NA	28	True	ATTAAA	-30	NA	38167352	38173125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_38167570_38169602_38169692_38172987
transcript_21749.known	chr16	+	3690	2	FSM	ENSMUSG00000046516.11	ENSMUST00000120495.2	3690	2	0	0	0	0	multi-exon	FALSE	canonical	3	3811	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAATATGCTGAACCG	NA	False	NA	9	True	ATTAAA	-11	NA	38167383	38173106	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_38167570_38169602
transcript_2175.nic	chr1	-	1590	10	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-61	-56	combination_of_known_junctions	FALSE	canonical	3	19	junction_9	18.9912260443255	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTGCATGCTGTCATTG	NA	False	NA	NA	False	AATAAA	-16	NA	130390249	130367946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_130368117_130375355_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130389834
transcript_21751.known	chr16	-	1974	11	FSM	ENSMUSG00000002847.8	ENSMUST00000002926.8	1974	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_9	86.6256313108309	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTTTGGTTGTTTTGTTG	NA	False	NA	-3	True	AATAAA	-20	NA	38253507	38216478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_38216898_38217700_38217866_38221237_38221347_38225898_38225989_38227953_38228122_38229956_38230047_38232447_38232550_38235130_38235240_38235679_38235858_38237421_38237624_38253165
transcript_21756.known	chr16	-	2966	4	FSM	ENSMUSG00000002844.10	ENSMUST00000002923.10	2966	4	0	0	0	0	multi-exon	FALSE	canonical	3	1151	junction_2	86.2824818063706	1145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTGGCTGGAGACCTTT	NA	False	NA	NA	False	NA	NA	NA	38273065	38264391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_38266467_38267609_38267971_38270490_38270846_38272890
transcript_21760.known	chr16	+	1701	5	FSM	ENSMUSG00000075122.6	ENSMUST00000099816.3	1701	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGGGGAGCAAGTTAGTG	NA	False	NA	NA	False	AATAAA	-19	NA	38279294	38307295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_38279652_38294227_38294546_38299425_38299708_38302981_38303096_38306665
transcript_21764.known	chr16	-	1573	7	FSM	ENSMUSG00000002846.10	ENSMUST00000002925.6	1573	7	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_6	22.2666916167525	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTTGTCTGGATCGCCT	NA	False	NA	-16	True	AGTAAA	-22	NA	38343025	38318708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_38319446_38322923_38323035_38325773_38325853_38329200_38329269_38331080_38331170_38338728_38338895_38342702
transcript_21769.nnic	chr16	-	823	3	NNC	ENSMUSG00000002846.10	novel	678	3	NA	NA	-28	2	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	92	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATTTTAGTATTTAATAT	NA	False	NA	-2	True	ATTAAA	-21	NA	38343053	38337019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_38337326_38338728_38338895_38342702
transcript_21770.known	chr16	-	678	3	FSM	ENSMUSG00000002846.10	ENSMUST00000147543.2	678	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	91	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAATTTTAGTATTTAAT	NA	False	NA	-4	True	ATTAAA	-19	NA	38343003	38337021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_38337233_38338728_38338895_38342702
transcript_2178.nnic	chr1	-	2474	9	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	2	9	junction_2	21.5982493503525	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTTGTCTCCTGTAATA	NA	False	NA	NA	False	TTTAAA	-45	NA	130390503	130366763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_130368117_130375355_130375377_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
transcript_21781.known	chr16	-	2758	11	FSM	ENSMUSG00000034064.15	ENSMUST00000036210.7	2758	11	0	0	0	0	multi-exon	FALSE	canonical	3	749	junction_10	82.4351866620074	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTGGCTCCTCATTTACT	6230	False	NA	-1	True	NA	NA	NA	38370620	38345498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369796_38370444
transcript_21782.known	chr16	-	2922	11	FSM	ENSMUSG00000034064.15	ENSMUST00000153187.8	2922	11	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_10	237.918389369128	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACCATTGGCTCCTCATTT	6266	False	NA	-4	True	NA	NA	NA	38370584	38345501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_38347144_38347938_38347996_38349806_38349975_38352145_38352205_38355086_38355187_38358268_38358329_38363199_38363322_38366110_38366247_38368799_38368944_38369704_38369999_38370444
transcript_2180.nnic	chr1	-	1291	9	NIC	ENSMUSG00000026399.13	novel	2533	10	NA	NA	-22	-56	combination_of_known_splicesites	FALSE	canonical	2	9	junction_2	21.5982493503525	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTGCATGCTGTCATTG	NA	False	NA	NA	False	AATAAA	-16	NA	130390503	130367946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_130368117_130375355_130375377_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
transcript_2182.nic	chr1	-	2160	9	ISM	ENSMUSG00000026399.13	ENSMUST00000027650.13	2533	10	-22	7634	-22	0	5prime_fragment	FALSE	canonical	3	38	junction_2	13.7244080018047	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCCTGATTGATTTGCC	NA	False	NA	NA	False	AATAAA	-24	NA	130390503	130374397	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_130375377_130376064_130376146_130377153_130377301_130380120_130380313_130384557_130384644_130385823_130385924_130387318_130387511_130389558_130389745_130390306
transcript_21829.known	chr16	+	1645	9	FSM	ENSMUSG00000002845.15	ENSMUST00000163884.8	1645	9	0	0	0	0	multi-exon	FALSE	canonical	1	310	junction_8	142.984210229661	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGATCTATTTTTTCTTGCG	7070	False	NA	0	True	GATAAA	-12	NA	38379059	38411552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
transcript_21832.nic	chr16	+	1806	9	NIC	ENSMUSG00000002845.15	novel	1645	9	NA	NA	-209	0	combination_of_known_junctions	FALSE	canonical	1	87	junction_5	232.101136360855	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGAGGTTGCCCCTTCA	6861	False	NA	-15	True	NA	NA	NA	38378850	38411708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_38379125_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408666_38411273
transcript_21834.known	chr16	+	2871	9	FSM	ENSMUSG00000002845.15	ENSMUST00000002924.15	2871	9	0	0	0	0	multi-exon	FALSE	canonical	1	126	junction_1	222.417084269622	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCCTATTTGTGAGCAT	NA	False	NA	4	True	AATAAA	-15	NA	38383173	38412524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
transcript_21835.known	chr16	+	2667	9	FSM	ENSMUSG00000002845.15	ENSMUST00000171687.8	2667	9	0	0	0	0	multi-exon	FALSE	canonical	1	87	junction_5	275.38779475496	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTCCTATTTGTGAGCAT	NA	False	NA	4	True	AATAAA	-15	NA	38383173	38412524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_38383493_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405741_38405881_38406582_38406771_38408544_38408666_38411273
transcript_21837.nnic	chr16	+	2176	9	NNC	ENSMUSG00000002845.15	novel	2871	9	NA	NA	-204	0	at_least_one_novel_splicesite	FALSE	canonical	1	18	junction_1	251.54817505798	125	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGAGGTTGCCCCTTCA	NA	False	NA	-15	True	NA	NA	NA	38382969	38411708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_38383410_38384476_38384664_38393415_38393639_38396104_38396189_38402331_38402487_38405537_38405881_38406582_38406771_38408544_38408666_38411273
transcript_2185.known	chr1	-	3164	3	FSM	ENSMUSG00000016526.9	ENSMUST00000016670.9	3164	3	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	9	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACTCATGCATCCTTTC	237	False	NA	NA	False	AATAAA	-25	NA	131066077	131055191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_131057983_131063996_131064109_131065816
transcript_21856.known	chr16	+	2009	7	FSM	ENSMUSG00000022793.18	ENSMUST00000154902.2	2009	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	9.26312882106017	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTCTTGGTCTTGTTTTTT	3944	False	NA	7	True	AGTAAA	-17	NA	38562657	38589210	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_38562731_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583492_38586276_38586382_38588259
transcript_21857.known	chr16	+	2304	7	FSM	ENSMUSG00000022793.18	ENSMUST00000023482.13	2304	7	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_1	6.0184900284226	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTACTGCTTTTGCAG	3912	False	NA	NA	False	NA	NA	NA	38562625	38589411	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_38562731_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583554_38586276_38586382_38588259
transcript_21858.known	chr16	+	2168	7	FSM	ENSMUSG00000022793.18	ENSMUST00000114712.8	2168	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	7.60847480700888	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTCTTGGTCTTGTTTTTT	3914	False	NA	7	True	AGTAAA	-17	NA	38562627	38589210	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_38562798_38572363_38572762_38574280_38574514_38578040_38578229_38583430_38583554_38586276_38586382_38588259
transcript_21859.known	chr16	-	1420	3	FSM	ENSMUSG00000047261.10	ENSMUST00000102817.5	1420	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGTGTCTCTGTGTTTC	NA	False	NA	2	True	AATAAA	-17	NA	42161014	42068804	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_42069478_42112161_42112730_42160835
transcript_2186.nnic	chr1	+	2100	15	NNC	ENSMUSG00000026427.17	novel	2009	15	NA	NA	-81	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	171.640820985485	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTATTTCTAATCTAAA	NA	False	NA	41	True	AATAAA	-22	NA	131080836	131101215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088136_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
transcript_21863.known	chr16	+	3745	16	FSM	ENSMUSG00000022701.19	ENSMUST00000178400.9	3745	16	0	0	0	0	multi-exon	FALSE	canonical	1	27	junction_10	16.0949957716331	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTCGATCCAGCATAGT	NA	False	NA	NA	False	AATAAA	-14	NA	43710162	43784677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_43710402_43718452_43718595_43725708_43725847_43727150_43727330_43728774_43728999_43735812_43735967_43751556_43751748_43759276_43759527_43763866_43764328_43765001_43765094_43767031_43767115_43767789_43767892_43777180_43777325_43779578_43779732_43780380_43780527_43783630
transcript_21868.nic	chr16	-	3101	9	NIC	ENSMUSG00000022704.17	novel	3856	9	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	1	31	junction_3	44.3163344603319	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCTGTGCATTGTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	43710073	43681769	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701330_43701577_43709929
transcript_21869.nic	chr16	-	3076	9	NIC	ENSMUSG00000022704.17	novel	3856	9	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	1	31	junction_3	35.9374456521328	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCTGTGCATTGTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	43710073	43681769	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_43683665_43687772_43687891_43689308_43689461_43691983_43692184_43696991_43697205_43698319_43698397_43700661_43700718_43701355_43701577_43709929
transcript_2188.known	chr1	+	2153	15	FSM	ENSMUSG00000026427.17	ENSMUST00000112446.9	2153	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_14	169.094301066184	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCCTTTGTGTCTTATTT	NA	False	NA	NA	False	AGTAAA	-24	NA	131080917	131099976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131099657
transcript_21880.known	chr16	-	3896	15	FSM	ENSMUSG00000052459.14	ENSMUST00000063661.13	3896	15	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_14	86.121532541792	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATGCAGTTCTCTATTTA	NA	False	NA	-11	True	AATATA	-17	NA	43959559	43906007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959310
transcript_21881.known	chr16	-	4234	15	FSM	ENSMUSG00000052459.14	ENSMUST00000114666.9	4234	15	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_14	44.4035299203538	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTCTTTCCCTTTTTATT	NA	False	NA	0	True	AATAAA	-18	NA	43959668	43905764	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_43907880_43909268_43909441_43911533_43911629_43919089_43919294_43920304_43920369_43921927_43922043_43922125_43922249_43927297_43927407_43928087_43928251_43929857_43930010_43931457_43931596_43931860_43932076_43934976_43935106_43937149_43937246_43959324
transcript_2189.known	chr1	+	2009	15	FSM	ENSMUSG00000026427.17	ENSMUST00000068805.14	2009	15	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_5	43.4650340351123	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTTTATTTCTAATCTAAA	NA	False	NA	41	True	AATAAA	-22	NA	131080917	131101215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_131081163_131081965_131082157_131082904_131082989_131083369_131083461_131085928_131086037_131088146_131088362_131089021_131089140_131091256_131091303_131092139_131092244_131092356_131092507_131092856_131092947_131094063_131094160_131095856_131095978_131098673_131098849_131101040
transcript_21892.known	chr16	+	4487	5	FSM	ENSMUSG00000022698.18	ENSMUST00000161326.8	4487	5	0	0	0	0	multi-exon	FALSE	canonical	3	958	junction_1	274.815733719887	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAAGTATTTGTTTTTGT	NA	False	NA	4	True	ATTAAA	-16	NA	43960215	43983729	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_43960475_43976772_43976910_43977436_43977557_43978242_43978310_43979825
transcript_21901.known	chr16	+	3557	5	FSM	ENSMUSG00000022698.18	ENSMUST00000063520.15	3557	5	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_1	525.255652040033	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTGATCTGTCTGTAACT	NA	False	NA	17	True	AATAAA	-17	NA	43960248	43982835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_43960475_43976775_43976910_43977436_43977557_43978242_43978310_43979825
transcript_21911.known	chr16	+	4627	18	FSM	ENSMUSG00000043065.13	ENSMUST00000050897.7	4627	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	35.5942143737688	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGCCCCCGTAGATTCA	6108	False	NA	NA	False	AATAAA	-23	NA	44167483	44208860	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_44167870_44175802_44175899_44176507_44176556_44178122_44178267_44185946_44186050_44186895_44187003_44187995_44188112_44190242_44190383_44190600_44190742_44191042_44191309_44192896_44193029_44196004_44196156_44197160_44197386_44199218_44199704_44202381_44202566_44205033_44205137_44205981_44206070_44207148
transcript_21916.known	chr16	+	2866	9	FSM	ENSMUSG00000036208.14	ENSMUST00000048788.14	2866	9	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	9.69455388349562	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCAATGCCATCACCTGA	NA	False	NA	NA	False	NA	NA	NA	44544663	44557647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_44544832_44547390_44547546_44549604_44549685_44549944_44550077_44550482_44550561_44551694_44552060_44552420_44552483_44554903_44555161_44556078
transcript_21919.known	chr16	-	3415	6	FSM	ENSMUSG00000022668.11	ENSMUST00000162512.8	3415	6	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	12.4739729036101	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCTTGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	44566726	44557130	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565757_44565857_44566361
transcript_21924.known	chr16	-	836	6	FSM	ENSMUSG00000022668.11	ENSMUST00000023348.11	836	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	38.0473389345431	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTAAGGGTTACAAATAAT	NA	False	NA	-72	True	NA	NA	NA	44566722	44559504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44565757_44565857_44566562
transcript_21925.known	chr16	-	739	5	FSM	ENSMUSG00000022668.11	ENSMUST00000161436.2	739	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	49.7562810105418	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGACAACTGGAGTTAAAC	NA	False	NA	NA	False	AGTAAA	-34	NA	44566646	44559627	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_44559732_44560391_44560511_44562866_44562967_44564100_44564232_44566361
transcript_21931.nnic	chr16	-	910	5	NIC	ENSMUSG00000022668.11	novel	3415	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_3	47.3675785743793	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTAAGGGTTACAAATAAT	NA	False	NA	-72	True	NA	NA	NA	44566726	44559504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_44559732_44560391_44560511_44562866_44562967_44565757_44565857_44566361
transcript_21934.known	chr16	-	4233	7	FSM	ENSMUSG00000022664.12	ENSMUST00000023344.10	4233	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	4.7404875511093	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGATTAGCCTTGAGTCCAC	NA	False	NA	NA	False	NA	NA	NA	44979069	44959935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_44962576_44963983_44964765_44967630_44967699_44971815_44971950_44972939_44973039_44977823_44978010_44978744
transcript_21936.known	chr16	+	2057	12	FSM	ENSMUSG00000022663.4	ENSMUST00000023343.4	2057	12	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_3	33.1011472673263	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACACATATGCCACATATA	NA	False	NA	NA	False	ATTAAA	-17	NA	44979147	45008901	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_44979535_44982768_44982811_44987342_44987393_44990228_44990300_44992008_44992117_44995611_44995662_44998592_44998675_45003018_45003054_45003183_45003340_45004044_45004173_45006528_45006598_45008022
transcript_21937.known	chr16	-	2347	6	FSM	ENSMUSG00000022661.15	ENSMUST00000163230.8	2347	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	7.98498591107085	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGAATTTTTTTTTTTC	NA	False	NA	NA	False	AATAAA	-7	NA	45229416	45202497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_45203821_45212607_45212752_45214955_45215229_45217331_45217659_45220584_45220667_45229218
transcript_21938.known	chr16	-	281	2	FSM	ENSMUSG00000022661.15	ENSMUST00000172091.2	281	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTGAAGCCTATCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	45229381	45227556	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_45227675_45229218
transcript_21939.known	chr16	-	1240	4	FSM	ENSMUSG00000022658.11	ENSMUST00000096057.5	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	1.63299316185545	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAGAGTATAACTTTATT	NA	False	NA	-9	True	AATAAA	-15	NA	45544971	45531592	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_45532073_45533294_45533398_45543285_45543461_45544489
transcript_21941.nnic	chr16	-	1153	6	NNC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	119.092233164048	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGGTGAGTCCTGTGC	NA	False	NA	-5	True	NA	NA	NA	45563336	45550087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_45550357_45552069_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
transcript_21949.known	chr16	-	827	5	FSM	ENSMUSG00000033157.18	ENSMUST00000128348.3	827	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	130.370625525845	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACCCGGATACTTCAGG	NA	False	NA	NA	False	AGTAAA	-3	NA	45563265	45551913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_45552323_45553100_45553143_45557255_45557394_45557886_45557999_45563139
transcript_21950.known	chr16	-	2848	5	FSM	ENSMUSG00000033157.18	ENSMUST00000066983.13	2848	5	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_3	18.7932833746528	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGGTGAGTCCTGTGC	NA	False	NA	-5	True	NA	NA	NA	45563318	45550087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_45552323_45557255_45557394_45557886_45557999_45560681_45560866_45563139
transcript_21958.nic	chr16	-	2668	4	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	92	junction_3	111.547697819762	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTATGGTGAGTCCTGTGC	NA	False	NA	-5	True	NA	NA	NA	45563322	45550087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_45552323_45557255_45557394_45557886_45557999_45563139
transcript_21959.nic	chr16	-	1244	4	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	-4	402	combination_of_known_junctions	FALSE	canonical	3	92	junction_3	111.547697819762	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGTGCCATGCTATATTTAA	NA	False	NA	NA	False	AATAAA	-14	NA	45563322	45551511	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_45552323_45557255_45557394_45557886_45557999_45563139
transcript_21960.nic	chr16	-	1099	4	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	-4	257	combination_of_known_junctions	FALSE	canonical	3	92	junction_3	111.547697819762	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTTTGTCTGGTACCAT	NA	False	NA	-8	True	AATAAA	-13	NA	45563322	45551656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_45552323_45557255_45557394_45557886_45557999_45563139
transcript_21961.nic	chr16	-	1019	4	NIC	ENSMUSG00000033157.18	novel	2848	5	NA	NA	-4	177	combination_of_known_junctions	FALSE	canonical	3	92	junction_3	111.547697819762	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGTTTGCCTTTCTTAC	NA	False	NA	-29	True	ATTAAA	-23	NA	45563322	45551736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_45552323_45557255_45557394_45557886_45557999_45563139
transcript_21964.nnic	chr16	-	2021	2	Genic_Genomic	ENSMUSG00000048087.7	novel	2093	1	NA	NA	0	0	multi-exon	FALSE	canonical	1	11	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAATAAAAAAAAATAAA	NA	False	NA	NA	False	GATAAA	-31	NA	45975440	45973347	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr16_-_45974209_45974280
transcript_21965.known	chr16	-	2093	1	FSM	ENSMUSG00000048087.7	ENSMUST00000059524.7	2093	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2265	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAATAAAAAAAAATAAA	NA	False	NA	NA	False	GATAAA	-31	NA	45975440	45973347	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_45973300_45975400
transcript_2197.known	chr1	-	3533	22	FSM	ENSMUSG00000026425.16	ENSMUST00000186543.7	3533	22	0	0	0	0	multi-exon	TRUE	canonical	3	29	junction_1	23.367225143015	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTTGCCAGATCTCTTG	NA	False	NA	0	True	AATAAA	-26	NA	131455085	131222955	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_131223278_131224057_131224205_131226069_131226251_131228130_131228211_131238211_131238437_131244866_131244973_131247262_131247398_131248172_131248251_131252825_131252887_131259854_131259880_131261594_131261623_131264127_131264213_131272086_131272285_131273499_131273602_131277189_131277415_131283248_131283378_131284427_131284644_131291739_131291803_131339537_131339701_131364412_131364606_131452675_131453332_131454970
transcript_21970.nnic	chr16	+	1605	8	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_3	208.929145298357	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104056	48114600	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_48104205_48108240_48108359_48108984_48109070_48109401_48109569_48109690_48109742_48111376_48111678_48113273_48113470_48114061
transcript_21979.nnic	chr16	+	1504	7	NNC	ENSMUSG00000058550.16	novel	1479	7	NA	NA	-39	-4	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_6	192.66443193629	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTTGTGGCTTTTGTT	NA	False	NA	19	True	ACTAAA	-1	NA	48104056	48114596	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_48104205_48108240_48108359_48109401_48109569_48109690_48109742_48111376_48111678_48113273_48113458_48114061
transcript_2198.known	chr1	+	2191	4	FSM	ENSMUSG00000055184.5	ENSMUST00000068613.5	2191	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	3.29983164553722	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAAAAAAGAATCT	NA	False	NA	NA	False	NA	NA	NA	131455640	131467610	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_131456591_131458391_131458470_131461546_131461672_131466572
transcript_21980.known	chr16	+	1479	7	FSM	ENSMUSG00000058550.16	ENSMUST00000096045.9	1479	7	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_4	76.5188792971309	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104097	48114600	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_48104205_48108240_48108359_48109401_48109569_48109690_48109742_48111376_48111678_48113273_48113470_48114061
transcript_21985.known	chr16	+	1271	6	FSM	ENSMUSG00000058550.16	ENSMUST00000050705.4	1271	6	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_3	211.400094607358	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTTTTGTTTTTG	NA	False	NA	23	True	ACTAAA	-5	NA	48104149	48114600	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_48104205_48108240_48108359_48109401_48109464_48111376_48111678_48113273_48113470_48114061
transcript_21993.known	chr16	+	2447	8	FSM	ENSMUSG00000072419.6	ENSMUST00000232448.2	2447	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	195.358069989965	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGCAGCTCACTCGCCTG	NA	False	NA	NA	False	AATACA	-17	NA	48124270	48140086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_48124570_48130639_48130903_48131937_48132074_48134245_48134398_48134491_48134546_48136024_48136281_48137650_48137847_48138995
transcript_21998.known	chr16	+	3045	27	FSM	ENSMUSG00000022652.8	ENSMUST00000023330.8	3045	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	334.347850609362	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAGAAAACATTTCCTT	NA	False	NA	11	True	AATAAA	-16	NA	48251599	48451263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_48251766_48257637_48257692_48262767_48262803_48266675_48266745_48269664_48269756_48270362_48270472_48272794_48272955_48281042_48281149_48300190_48300317_48319109_48319190_48320456_48320528_48322667_48322733_48330559_48330704_48334948_48335104_48378731_48378861_48381897_48382004_48385940_48386080_48402779_48402849_48407255_48407502_48412876_48412979_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
transcript_22.known	ERCC-00060	+	506	1	FSM	ERCC-00060A	DQ516763	506	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00060_+_0_500
transcript_2201.known	chr1	+	6900	13	FSM	ENSMUSG00000042251.13	ENSMUST00000112393.9	6900	13	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	6.31741420378799	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGATGTTCATGGGCCAG	NA	False	NA	NA	False	AATAAA	-10	NA	131725118	131749199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_131725325_131726333_131726421_131728831_131729065_131729463_131729551_131730038_131730173_131730457_131730578_131731789_131731866_131732324_131732387_131732630_131732710_131734636_131734709_131739772_131739942_131741628_131741729_131743724
transcript_22012.nnic	chr16	+	1386	9	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	16951	623	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	472.316746871207	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATTTTGATGTATAATG	646	False	NA	12	True	ATTAAA	-16	NA	48431980	48451886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_48432112_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067_48451569_48451759
transcript_22014.nnic	chr16	+	954	8	NNC	ENSMUSG00000022652.8	novel	3045	27	NA	NA	16951	0	at_least_one_novel_splicesite	FALSE	canonical	3	194	junction_1	345.998525418587	104	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTAGAAAACATTTCCTT	646	False	NA	11	True	AATAAA	-16	NA	48431980	48451263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_48432112_48432651_48432725_48436057_48436125_48438864_48439015_48442924_48443013_48444652_48444707_48447275_48447471_48451067
transcript_22017.known	chr16	-	5820	32	FSM	ENSMUSG00000064061.14	ENSMUST00000121869.8	5820	32	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_19	19.7691147506127	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTATTTCTTTATGTATT	4197	False	NA	-7	True	AATAAA	-18	NA	48814528	48744594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_48746466_48747904_48748007_48748092_48748219_48748658_48748780_48749978_48750119_48751530_48751657_48754156_48754259_48755861_48755950_48757332_48757437_48758796_48758894_48762014_48762084_48762438_48762567_48763819_48763916_48765125_48765292_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48771905_48772524_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
transcript_22020.nic	chr16	-	2108	20	ISM	ENSMUSG00000064061.14	ENSMUST00000114516.8	3331	31	-139	16260	85	3403	5prime_fragment	FALSE	canonical	3	44	junction_7	20.01855095334	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGAAAAGATTATTGTAT	4282	False	NA	NA	False	AAAACA	-42	NA	48814443	48762501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_-_48762567_48763819_48763916_48765125_48765292_48765960_48765987_48768037_48768086_48768769_48768940_48770363_48770397_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
transcript_22024.nic	chr16	-	1569	15	ISM	ENSMUSG00000064061.14	ENSMUST00000114516.8	3331	31	-1	22528	-1	-2865	5prime_fragment	FALSE	canonical	3	44	junction_2	22.4353947764578	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATAAAGTTTATTAAATTT	4420	False	NA	NA	False	NA	NA	NA	48814305	48768769	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_-_48768940_48770363_48770397_48774089_48774167_48778015_48778069_48778781_48778875_48780017_48780120_48781470_48781591_48792584_48792700_48795785_48795911_48798244_48798326_48799908_48800026_48801261_48801418_48802422_48802496_48804897_48804999_48814152
transcript_22026.known	chr16	+	3974	21	FSM	ENSMUSG00000033031.14	ENSMUST00000048374.6	3974	21	0	0	0	0	multi-exon	FALSE	canonical	2	173	junction_10	25.4173169315725	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACATTTTAGATCAGTAC	NA	False	NA	NA	False	AATAAA	-23	NA	48814550	48840068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_48814743_48817733_48817882_48819317_48819431_48820623_48820719_48821353_48821451_48821928_48822052_48822154_48822301_48824289_48824366_48824631_48824848_48826050_48826211_48827412_48827555_48829440_48829541_48831071_48831191_48833537_48833734_48834159_48834235_48834327_48834439_48835255_48835453_48836306_48836421_48836641_48836725_48837714_48837855_48838737
transcript_2203.known	chr1	+	4697	11	FSM	ENSMUSG00000013275.10	ENSMUST00000086559.7	4697	11	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	13.4402380931292	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTATCCCTGTGTGTCT	5202	False	NA	23	True	AATAAA	-20	NA	131755714	131776603	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_131756132_131757748_131758729_131766852_131766961_131767914_131767987_131768592_131768738_131768865_131769013_131769722_131769871_131770686_131770767_131771656_131771792_131772075_131772225_131774287
transcript_22030.known	chr16	+	2601	11	FSM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_7	10.0915806492343	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTACCTTTCTTCCCTAAA	NA	False	NA	NA	False	ATTAAA	-17	NA	49519595	49585489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_49519913_49522216_49522380_49523512_49523632_49526453_49526545_49532201_49532271_49557034_49557158_49578757_49578830_49579679_49579812_49581316_49581380_49582963_49583031_49584104
transcript_22031.nic	chr16	+	1458	10	NIC	ENSMUSG00000032965.12	novel	2601	11	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_1	50.3957180230794	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTCAGAGAAGTGTTC	NA	False	NA	18	True	AATAAA	-14	NA	49519566	49584480	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_49519913_49523512_49523632_49526453_49526545_49532201_49532271_49557034_49557158_49578757_49578830_49579679_49579812_49581316_49581380_49582963_49583031_49584104
transcript_22033.nic	chr16	+	1356	6	ISM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	-68	27926	-68	25333	5prime_fragment	FALSE	canonical	3	148	junction_2	7.35934779718964	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTTTTGCACTATAC	NA	False	NA	NA	False	ATTAAA	-14	NA	49519527	49557563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_+_49519913_49522216_49522380_49523512_49523632_49526453_49526545_49532201_49532271_49557034
transcript_22034.nic	chr16	+	1926	5	ISM	ENSMUSG00000032965.12	ENSMUST00000046777.11	2601	11	-68	52120	-68	1139	5prime_fragment	FALSE	canonical	3	148	junction_2	8.03118920210451	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTATAAGCTTATTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	49519527	49533369	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_+_49519913_49522216_49522380_49523512_49523632_49526453_49526545_49532201
transcript_22035.known	chr16	+	1032	12	FSM	ENSMUSG00000055447.20	ENSMUST00000230641.2	1032	12	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	27.2824225191312	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGAAGTGACGGACTGTA	NA	False	NA	NA	False	NA	NA	NA	49676149	49731239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_49676196_49688127_49688476_49689380_49689444_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49729065_49729099_49731231
transcript_22036.known	chr16	+	1358	11	FSM	ENSMUSG00000055447.20	ENSMUST00000229101.2	1358	11	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	27.0739727413618	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49675995	49731444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_49676196_49688127_49688476_49689380_49689444_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49731231
transcript_22037.known	chr16	+	1316	11	FSM	ENSMUSG00000055447.20	ENSMUST00000229206.2	1316	11	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_9	24.8766959220874	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49676007	49731444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49729065_49729099_49731231
transcript_22039.nic	chr16	+	1283	10	NIC	ENSMUSG00000055447.20	novel	1316	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_9	22.7107414625278	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49676007	49731444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728442_49731231
transcript_22040.known	chr16	+	1271	10	FSM	ENSMUSG00000055447.20	ENSMUST00000230281.2	1271	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	27.4352211222124	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49676018	49731444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49727143_49727176_49728416_49728446_49731236
transcript_22043.nnic	chr16	+	1226	8	NIC	ENSMUSG00000055447.20	novel	1316	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_7	27.9335947254505	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTGGAATCCCATTTTT	NA	False	NA	19	True	AATAAA	-23	NA	49676007	49731444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_49676196_49688127_49688476_49704527_49704618_49714539_49714648_49715731_49715825_49716718_49716812_49718402_49718496_49731231
transcript_22047.known	chr16	-	4516	13	FSM	ENSMUSG00000022641.16	ENSMUST00000114477.8	4516	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_12	4.38669072941729	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAGCAAAACTTAAA	9715	False	NA	NA	False	NA	NA	NA	50252752	50038919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_50040957_50043612_50043749_50044650_50045657_50061216_50061298_50068144_50068220_50071676_50071758_50082778_50082847_50086539_50086733_50094909_50095153_50100731_50100903_50151391_50151466_50249272_50249345_50252473
transcript_22048.known	chr16	-	8743	17	FSM	ENSMUSG00000022641.16	ENSMUST00000138166.8	8743	17	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_15	4.24079886342184	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTCAAATACATTTCTTT	9714	False	NA	-1	True	AATAAA	-35	NA	50252753	50012206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_50018010_50020770_50020955_50022740_50022939_50029447_50029508_50040807_50040957_50043612_50043749_50044650_50045657_50061216_50061298_50068144_50068220_50071676_50071758_50082778_50082847_50086539_50086733_50094909_50095153_50100731_50100903_50151391_50151466_50249272_50249345_50252604
transcript_22051.known	chr16	-	2896	2	FSM	ENSMUSG00000022639.15	ENSMUST00000186535.2	2896	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGCTGAGTAGTACTCCA	NA	False	NA	NA	False	NA	NA	NA	50553091	50545987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_50548573_50552780
transcript_22054.nnic	chr16	-	1174	3	Intergenic	novelGene_7	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	6	junction_1	5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTGTTTTTCCTTGAAA	NA	False	NA	NA	False	ATTAAA	-24	NA	55609195	55596649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Intergenic_chr16_-_55596986_55600813_55601569_55609112
transcript_22056.nnic	chr16	-	2953	6	NNC	ENSMUSG00000075033.5	novel	6436	6	NA	NA	-121	-3244	at_least_one_novel_splicesite	TRUE	canonical	2	4	junction_1	2.13541565040626	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACAAGTATTTCTTGACTT	NA	False	NA	NA	False	AATAAA	-19	NA	55715769	55663559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_55665090_55669974_55670182_55680668_55680743_55686158_55686914_55710944_55711213_55715650
transcript_2206.known	chr1	+	1226	6	FSM	ENSMUSG00000026433.14	ENSMUST00000027693.8	1226	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	27.6506781110337	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGGGTTGTGATGCTGGG	NA	False	NA	15	True	ATTAAA	-17	NA	131794977	131800625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_131795149_131795256_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
transcript_22060.known	chr16	-	7911	11	FSM	ENSMUSG00000022604.19	ENSMUST00000023270.14	7911	11	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_5	7.29383301152419	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGTGATATCTGGTTATT	NA	False	NA	-1	True	AATAAA	-15	NA	55755218	55720250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_55726233_55731917_55731994_55735219_55735995_55738900_55739026_55739765_55739931_55742433_55742601_55743289_55743404_55745331_55745434_55748083_55748243_55750828_55750972_55755115
transcript_22061.known	chr16	-	609	5	FSM	ENSMUSG00000022604.19	ENSMUST00000121703.3	609	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	14.2653426176871	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATAGTATCGAGTTTTTTC	NA	False	NA	NA	False	NA	NA	NA	55755196	55744918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_55745043_55745331_55745434_55748083_55748243_55750828_55750972_55755115
transcript_22062.known	chr16	-	1057	4	FSM	ENSMUSG00000022604.19	ENSMUST00000122280.8	1057	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	6.0184900284226	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATTGGATATTTTGTGC	NA	False	NA	NA	False	AATAAA	-20	NA	55755160	55744723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_55745434_55748083_55748243_55750828_55750972_55755115
transcript_22067.known	chr16	+	677	6	FSM	ENSMUSG00000098274.8	ENSMUST00000023269.5	677	6	0	0	0	0	multi-exon	FALSE	canonical	3	9815	junction_1	1495.09793659145	1758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786637	55791798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_55786802_55786909_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
transcript_2207.known	chr1	+	1202	5	FSM	ENSMUSG00000026433.14	ENSMUST00000112386.8	1202	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	6.13901457890434	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGCATCTGCGTTGTTC	NA	False	NA	NA	False	NA	NA	NA	131794961	131800477	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_131795514_131797670_131797743_131798417_131798600_131799804_131799927_131800203
transcript_22075.known	chr16	-	2200	5	FSM	ENSMUSG00000071533.12	ENSMUST00000125040.8	2200	5	0	0	0	0	multi-exon	FALSE	canonical	3	494	junction_4	790.763357459107	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	55850059	55835868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844750_55849965
transcript_22076.known	chr16	-	2295	5	FSM	ENSMUSG00000071533.12	ENSMUST00000114444.9	2295	5	0	0	0	0	multi-exon	FALSE	canonical	3	1624	junction_1	369.138439477657	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTCTTATTTTCTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	55850102	55835868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55844802_55849965
transcript_22077.known	chr16	-	938	5	FSM	ENSMUSG00000071533.12	ENSMUST00000130818.8	938	5	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_4	876.141113063415	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATGTTTTATATACAGAT	NA	False	NA	NA	False	AATAAA	-24	NA	55850039	55837361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_55837681_55838834_55838891_55842417_55842493_55844586_55845001_55849965
transcript_22089.known	chr16	-	792	4	FSM	ENSMUSG00000071533.12	ENSMUST00000122253.2	792	4	0	0	0	0	multi-exon	FALSE	canonical	3	1778	junction_3	312.848206004126	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGATTTTTGTTTCATTTT	NA	False	NA	NA	False	NA	NA	NA	55850059	55838482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_55838891_55842417_55842493_55844586_55844802_55849965
transcript_22092.known	chr16	+	639	5	FSM	ENSMUSG00000098274.8	ENSMUST00000137811.8	639	5	0	0	0	0	multi-exon	FALSE	canonical	3	12575	junction_2	609.402371180159	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGTGCTGATTGATTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	55786783	55791798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_55786986_55787422_55787534_55789872_55790010_55790474_55790539_55791673
transcript_22093.known	chr16	-	446	3	FSM	ENSMUSG00000071533.12	ENSMUST00000140227.2	446	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	806	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACTAATAAATGAGAGTTTG	NA	False	NA	NA	False	NA	NA	NA	55850069	55837394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_55837681_55838834_55838891_55849965
transcript_22094.known	chr16	-	3002	2	FSM	ENSMUSG00000044763.9	ENSMUST00000059052.9	3002	2	0	0	0	0	multi-exon	FALSE	canonical	3	404	junction_1	0	219	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTATATTTTTACTATTTT	7386	False	NA	NA	False	NA	NA	NA	55858182	55852971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_55855655_55857863
transcript_22096.known	chr16	+	1130	7	FSM	ENSMUSG00000052917.16	ENSMUST00000049128.11	1130	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_6	9.3407708461347	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTAATGACATTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	55895826	55946902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_55895942_55902718_55902772_55909746_55909828_55917702_55917795_55931968_55932167_55944141_55944334_55946503
transcript_22099.nic	chr16	+	1058	7	ISM	ENSMUSG00000052917.16	ENSMUST00000202000.2	3218	8	-76	2646	0	208	5prime_fragment	FALSE	canonical	3	17	junction_6	8.60232526704263	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGTATTTCTTTCTTTAT	NA	False	NA	NA	False	AATAAA	-30	NA	55895766	55959614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_+_55895942_55902718_55902772_55909746_55909828_55917702_55917795_55931968_55932167_55944141_55944334_55959347
transcript_22103.known	chr16	+	914	6	FSM	ENSMUSG00000052917.16	ENSMUST00000201011.2	914	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	10.507140429251	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTCCTTGCCTTGCTAGCC	NA	False	NA	NA	False	ACTAAA	-17	NA	55895842	55946783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_55895942_55902718_55902772_55917702_55917795_55931968_55932167_55944141_55944334_55946503
transcript_22105.known	chr16	+	698	6	FSM	ENSMUSG00000052917.16	ENSMUST00000202799.4	698	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	9.74884608556315	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGCAGGGTGATGATGGA	NA	False	NA	NA	False	NA	NA	NA	55895837	55959406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_55895942_55902718_55902772_55917702_55917795_55931968_55932167_55944141_55944334_55959347
transcript_22108.known	chr16	-	1945	8	FSM	ENSMUSG00000022757.20	ENSMUST00000065515.14	1945	8	0	0	0	0	multi-exon	FALSE	canonical	3	474	junction_2	54.3950027716757	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTCTTGTTGCCTAAT	NA	False	NA	0	True	AATAAA	-16	NA	56537813	56510694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_56511517_56514762_56514853_56517821_56517960_56521431_56521600_56524789_56524937_56525973_56526058_56532973_56533204_56537547
transcript_22109.nnic	chr16	-	1936	8	NNC	ENSMUSG00000022757.20	novel	1945	8	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_2	169.645368402465	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTCTTGTTGCCTAAT	NA	False	NA	0	True	AATAAA	-16	NA	56537816	56510694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_56511517_56514762_56514853_56517833_56517960_56521431_56521600_56524789_56524937_56525973_56526058_56532973_56533204_56537547
transcript_2211.known	chr1	+	5998	7	FSM	ENSMUSG00000026434.13	ENSMUST00000062264.8	5998	7	0	0	0	0	multi-exon	FALSE	canonical	3	1163	junction_5	186.902306626275	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTGTGCTTCGTGTGCTT	9304	False	NA	27	True	TATAAA	-18	NA	131838293	131864059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_131838489_131846742_131846793_131849680_131849787_131852323_131852380_131855801_131855955_131857350_131857501_131858771
transcript_22110.known	chr16	+	5964	12	FSM	ENSMUSG00000022752.10	ENSMUST00000166897.3	5964	12	0	0	0	0	multi-exon	FALSE	canonical	3	1304	junction_5	122.457278770872	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTGATGGGATATTAG	NA	False	NA	13	True	AATAAA	-15	NA	56942065	56977068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_56942558_56953439_56953614_56955015_56955143_56957060_56957171_56958392_56958542_56960941_56961150_56963083_56963219_56965053_56965162_56966392_56966510_56968095_56968194_56970182_56970306_56972945
transcript_22115.known	chr16	-	1286	10	FSM	ENSMUSG00000022751.10	ENSMUST00000023432.10	1286	10	0	0	0	0	multi-exon	TRUE	canonical	3	674	junction_8	39.9499687108764	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGATGTTTTTCTTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	56987695	56977027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_56977530_56977846_56977903_56979780_56979880_56980429_56980509_56981492_56981568_56982053_56982148_56983880_56983970_56984560_56984682_56986460_56986580_56987643
transcript_22126.known	chr16	-	3690	18	FSM	ENSMUSG00000022749.9	ENSMUST00000023431.8	3690	18	0	0	0	0	multi-exon	TRUE	canonical	3	134	junction_12	18.4520326427881	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCCCTGGAGGATGTC	NA	False	NA	-4	True	AATAAA	-22	NA	57051867	56989224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_56990804_56991985_56992181_56993386_56993523_56998294_56998384_57003213_57003354_57004742_57004850_57007000_57007044_57009624_57009796_57011836_57011930_57012971_57013095_57018643_57018748_57019086_57019134_57019221_57019347_57028566_57028691_57032733_57032939_57034526_57034633_57038671_57038784_57051676
transcript_22128.nnic	chr16	-	2026	4	NNC	ENSMUSG00000022749.9	novel	3690	18	NA	NA	3678	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	80.5536398239638	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGCCCTGGAGGATGTC	NA	False	NA	-4	True	AATAAA	-22	NA	56994941	56989224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_56990804_56991985_56992181_56993386_56993523_56994825
transcript_22131.known	chr16	-	610	2	FSM	ENSMUSG00000022748.9	ENSMUST00000231282.2	610	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAATGAGTTTCAGAAGT	NA	False	NA	NA	False	NA	NA	NA	57427139	57264855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_57265355_57427028
transcript_22132.known	chr16	-	529	2	FSM	ENSMUSG00000022748.9	ENSMUST00000232413.2	529	2	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTATTTATGTTTTGTGAT	NA	False	NA	-1	True	AATAAA	-17	NA	57427227	57381795	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_57382126_57427028
transcript_22133.known	chr16	-	1918	12	FSM	ENSMUSG00000022747.18	ENSMUST00000114357.10	1918	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	2.05703790890632	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCCGTGGTGTCCATTGT	NA	False	NA	NA	False	NA	NA	NA	58344548	58290574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_58291091_58292673_58292827_58293771_58293910_58294016_58294204_58296212_58296309_58305125_58305190_58306757_58306862_58309266_58309345_58314042_58314225_58327810_58327978_58343864_58344036_58344486
transcript_22135.known	chr16	+	1540	6	FSM	ENSMUSG00000022744.13	ENSMUST00000162057.8	1540	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	183.824916700648	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAAAAAAAGTGAAAA	NA	False	NA	NA	False	NA	NA	NA	58548287	58553971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_58548448_58549535_58549587_58549800_58550111_58551664_58551776_58552943_58553082_58553201
transcript_22136.nic	chr16	+	2191	6	NIC	ENSMUSG00000022744.13	novel	2147	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	183.063486255452	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTGAGATCACAACATG	NA	False	NA	24	True	AATAAA	-31	NA	58548272	58554614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_+_58548448_58549542_58549587_58549800_58550111_58551664_58551776_58552943_58553082_58553201
transcript_22137.known	chr16	+	2147	5	FSM	ENSMUSG00000022744.13	ENSMUST00000023426.12	2147	5	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	33.101170674162	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTGAGATCACAACATG	NA	False	NA	24	True	AATAAA	-31	NA	58548272	58554614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_58548448_58549800_58550111_58551664_58551776_58552943_58553082_58553201
transcript_22138.nnic	chr16	+	1950	5	NNC	ENSMUSG00000022744.13	novel	2147	5	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	168.339500712103	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTTGAGATCACAACATG	NA	False	NA	24	True	AATAAA	-31	NA	58548369	58554614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_58548448_58549900_58550111_58551664_58551776_58552943_58553082_58553201
transcript_22141.known	chr16	+	2159	10	FSM	ENSMUSG00000022724.16	ENSMUST00000023407.12	2159	10	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_9	29.2042614850793	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGGCCGGTATATACATG	NA	False	NA	-44	True	NA	NA	NA	59292137	59312824	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_59292309_59295872_59296333_59299532_59299653_59300653_59300783_59303367_59303472_59306895_59306999_59307790_59307963_59309707_59309797_59311567_59311658_59312103
transcript_2215.nic	chr1	+	705	6	ISM	ENSMUSG00000026434.13	ENSMUST00000062264.8	5998	7	-69	6633	-47	-383	5prime_fragment	FALSE	canonical	3	1163	junction_5	193.114059560665	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAAGATGGTTAAGAAGT	9235	False	NA	0	True	AAAAAG	-6	NA	131838224	131857426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_131838489_131846742_131846793_131849680_131849787_131852323_131852380_131855801_131855955_131857350
transcript_22151.known	chr16	-	1554	9	FSM	ENSMUSG00000022722.19	ENSMUST00000099646.10	1554	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	44.8525361601772	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAACTAGAGTGTTCTG	NA	False	NA	NA	False	AATAAA	-10	NA	59459754	59433690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_59434208_59439028_59439042_59439157_59439214_59441581_59441712_59443383_59443479_59444240_59444310_59444642_59444705_59452673_59452824_59459292
transcript_22152.known	chr16	-	1696	8	FSM	ENSMUSG00000022722.19	ENSMUST00000023405.16	1696	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_5	9.94064014692275	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTATTTTTATCCTTAACA	NA	False	NA	NA	False	AATAAA	-21	NA	59459530	59433311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_59434208_59439157_59439214_59441581_59441712_59443383_59443479_59444240_59444310_59444642_59444705_59452673_59452824_59459292
transcript_22153.known	chr16	-	3565	6	FSM	ENSMUSG00000050312.13	ENSMUST00000143314.8	3565	6	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_4	5.49181208709839	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGCCTTTTTTTGACC	NA	False	NA	NA	False	ATTAAA	-18	NA	62607140	62552806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_62555782_62589969_62590092_62591020_62591176_62596650_62596747_62606150_62606261_62607033
transcript_22154.known	chr16	-	3813	6	FSM	ENSMUSG00000050312.13	ENSMUST00000063089.12	3813	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	5.74804314527997	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGATGCCTTTTTTTGACC	NA	False	NA	NA	False	ATTAAA	-18	NA	62607140	62552806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_62555782_62589969_62590092_62591020_62591176_62596650_62596995_62606150_62606261_62607033
transcript_22155.known	chr16	-	3528	10	FSM	ENSMUSG00000022911.12	ENSMUST00000089289.6	3528	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	10.3494497975067	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCATTTATCTAATTTTAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	62667403	62614047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_62616072_62622084_62622154_62623082_62623200_62624199_62624426_62626904_62627011_62632211_62632415_62633521_62633628_62647526_62647777_62651105_62651177_62667047
transcript_2216.known	chr1	+	3212	5	FSM	ENSMUSG00000026435.16	ENSMUST00000177943.8	3212	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	4.65698400254929	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGTTTGTCTTTTCTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	131890704	131910707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_131890791_131904455_131904851_131905150_131905937_131906485_131906752_131909028
transcript_22161.known	chr16	+	3303	15	FSM	ENSMUSG00000022912.9	ENSMUST00000023629.9	3303	15	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_5	24.011476847711	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGCAATTTCTTTATTT	NA	False	NA	NA	False	AATAAA	-22	NA	62674669	62749709	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_62674868_62705763_62705922_62709343_62709369_62719238_62719326_62720688_62720812_62720915_62721048_62723854_62723981_62728024_62728147_62730360_62730477_62734160_62734351_62738437_62738606_62739875_62740045_62744878_62745028_62746690_62746917_62748395
transcript_22164.known	chr16	-	5522	3	FSM	ENSMUSG00000059920.10	ENSMUST00000076991.7	5522	3	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	18.5	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCCTTATATTTTAAAGAA	NA	False	NA	NA	False	AATAAA	-39	NA	64591524	64582498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_64587357_64589286_64589526_64591099
transcript_22166.known	chr16	-	6261	9	FSM	ENSMUSG00000047141.6	ENSMUST00000207826.2	6261	9	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_4	10.7812047100498	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAGTGTTCAGTTTTATG	NA	False	NA	-3	True	AATAAA	-20	NA	64672015	64600709	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_64603640_64604869_64607166_64608667_64608810_64611449_64611590_64612131_64612335_64614783_64614920_64634987_64635070_64650826_64650973_64671829
transcript_22167.known	chr16	+	4425	3	FSM	ENSMUSG00000054604.8	ENSMUST00000067744.8	4425	3	0	0	0	0	multi-exon	FALSE	canonical	3	981	junction_2	152	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATATTTTGTTTTGTGAGC	NA	False	NA	21	True	AATAAA	-30	NA	64672358	64679870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_64672600_64673161_64673389_64675913
transcript_22169.known	chr16	-	1722	7	FSM	ENSMUSG00000004843.8	ENSMUST00000231259.2	1722	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	119.881422895941	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGCCTAACGCGCATCA	NA	False	NA	-8	True	AATAAA	-19	NA	65359406	65336013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_65337137_65337305_65337413_65342162_65342266_65343734_65343930_65347848_65347941_65350904_65350961_65359360
transcript_2217.known	chr1	+	2936	8	FSM	ENSMUSG00000009772.16	ENSMUST00000072177.14	2936	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	17.0784504387182	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCTCTTGTTCACTTTGG	NA	False	NA	NA	False	ATTAAA	-24	NA	132243863	132261031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_132244211_132252690_132252812_132253943_132253968_132255434_132255587_132255868_132255935_132257695_132257816_132258296_132258430_132259058
transcript_22170.known	chr16	-	1872	6	FSM	ENSMUSG00000004843.8	ENSMUST00000004965.8	1872	6	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_5	16.0573970493352	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGCCTAACGCGCATCA	NA	False	NA	-8	True	AATAAA	-19	NA	65359612	65336013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_65337137_65337305_65337413_65342162_65342266_65343734_65343930_65347848_65347941_65359360
transcript_22172.known	chr16	+	2984	16	FSM	ENSMUSG00000022707.17	ENSMUST00000163832.8	2984	16	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	11.0445562256807	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGACTAATGTGCTTTTTAT	NA	False	NA	NA	False	AATAAA	-21	NA	70110836	70366604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_70111184_70157745_70157916_70198621_70198742_70230436_70230559_70231401_70231538_70233815_70233907_70237997_70238208_70275193_70275310_70280708_70280837_70284915_70285015_70288821_70288933_70292115_70292288_70324004_70324190_70325767_70325899_70357911_70358030_70365876
transcript_22173.nnic	chr16	+	2968	6	NNC	ENSMUSG00000022883.12	novel	6601	29	NA	NA	17377	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	19.2727787306346	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCCTTCCTTGTGTTGAT	NA	False	NA	NA	False	ATTAAA	-17	NA	72820685	72842983	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_72820840_72821019_72821427_72824644_72824798_72832546_72832856_72839878_72840076_72841235
transcript_22174.known	chr16	-	4237	5	FSM	ENSMUSG00000032932.16	ENSMUST00000046283.16	4237	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	5.78791845139511	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGAAAGAGAAGG	3981	False	NA	NA	False	NA	NA	NA	75563709	75551909	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_75555337_75556302_75556471_75557983_75558198_75561831_75562173_75563622
transcript_22177.nnic	chr16	-	466	2	Genic_Genomic	ENSMUSG00000050299.9	novel	402	1	NA	NA	-61	59	multi-exon	FALSE	canonical	3	117	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTACTTGCAAAGCAAACT	NA	False	NA	-2	True	AATAAA	-30	NA	76200601	76200079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr16_-_76200265_76200320
transcript_22178.known	chr16	-	402	1	FSM	ENSMUSG00000050299.9	ENSMUST00000052867.9	402	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	762	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTATTGCCACCCTGCCA	NA	False	NA	-61	True	NA	NA	NA	76200540	76200138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_76200100_76200500
transcript_22179.nic	chr16	+	1439	3	ISM	ENSMUSG00000022867.12	ENSMUST00000239066.2	4986	26	100112	187	29918	-187	3prime_fragment	FALSE	canonical	3	57	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAACCGTAAAAGACGT	NA	False	NA	NA	False	NA	NA	NA	76910705	76913481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_+_76910745_76911771_76911968_76912277
transcript_2218.known	chr1	+	3107	7	FSM	ENSMUSG00000009772.16	ENSMUST00000082125.6	3107	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	6.54896090146283	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAACAAACAAACAAGCACCC	NA	False	NA	NA	False	NA	NA	NA	132243863	132261226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_132244211_132252690_132252812_132255434_132255587_132255868_132255935_132257695_132257816_132258296_132258430_132259058
transcript_22180.known	chr16	+	5742	7	FSM	ENSMUSG00000022865.15	ENSMUST00000023572.15	5742	7	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_4	8.97527467855751	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGCGGTGTGGCTTTATT	NA	False	NA	20	True	AATAAA	-21	NA	78098383	78137648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_78098763_78122044_78122212_78125841_78126047_78130249_78130406_78131056_78131180_78131709_78131849_78133075
transcript_22181.known	chr16	-	6127	5	FSM	ENSMUSG00000022864.15	ENSMUST00000232052.2	6127	5	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_4	82.0381009043969	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGAGCCTCGGTTGATT	3243	False	NA	-3	True	AATAAA	-20	NA	78373545	78337225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373078
transcript_22182.known	chr16	-	1576	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114219.8	1576	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	120.034370077907	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATTGCTATTTTGGGTAT	3243	False	NA	NA	False	TATAAA	-12	NA	78373545	78341576	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373278
transcript_22183.known	chr16	-	1271	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114218.2	1271	5	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_4	107.072405408677	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCAGGGTTACTCAATCA	3243	False	NA	-4	True	AATAAA	-13	NA	78373545	78341848	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373311
transcript_22184.known	chr16	-	2644	5	FSM	ENSMUSG00000022864.15	ENSMUST00000114220.9	2644	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	113.984648089118	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATACT	3253	False	NA	NA	False	NA	NA	NA	78373535	78340430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373346
transcript_22185.nic	chr16	-	2704	5	NIC	ENSMUSG00000022864.15	novel	2644	5	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	59	junction_4	108.368295640376	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAATACT	3169	False	NA	NA	False	NA	NA	NA	78373619	78340430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373370
transcript_2219.nic	chr1	-	2399	3	ISM	ENSMUSG00000042066.17	ENSMUST00000136828.3	2771	4	6037	0	3913	0	3prime_fragment	FALSE	canonical	3	27	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGTCTGAGGTCTGCTG	3013	False	NA	-1	True	AATAAA	-22	NA	132288773	132284053	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_132285556_132286640_132286777_132288012
transcript_22192.nnic	chr16	-	1448	5	NNC	ENSMUSG00000022864.15	novel	1271	5	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_4	130.840312977308	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCAGGGTTACTCAATCA	3193	False	NA	-4	True	AATAAA	-13	NA	78373595	78341848	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373184
transcript_22196.nic	chr16	-	1286	5	NIC	ENSMUSG00000022864.15	novel	1271	5	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	59	junction_4	108.368295640376	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCCAGGGTTACTCAATCA	3169	False	NA	-4	True	AATAAA	-13	NA	78373619	78341848	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_78342173_78343393_78343457_78344463_78344980_78372808_78372943_78373370
transcript_22197.known	chr16	-	523	2	FSM	ENSMUSG00000022889.8	ENSMUST00000133901.2	523	2	0	0	0	0	multi-exon	FALSE	canonical	3	1018	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCTCATTAAAGTATTTT	NA	False	NA	NA	False	NA	NA	NA	84532118	84531055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_84531502_84532041
transcript_222.known	chr1	-	1569	4	FSM	ENSMUSG00000033845.14	ENSMUST00000146665.3	1569	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	1077.56031024821	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTATATAAGAGTTTTGTC	1620	False	NA	NA	False	TTTAAA	-22	NA	4855962	4851443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_4852525_4852790_4852957_4854173_4854329_4855795
transcript_22208.known	chr16	+	4370	10	FSM	ENSMUSG00000053062.17	ENSMUST00000114195.8	4370	10	0	0	0	0	multi-exon	TRUE	canonical	3	3263	junction_7	414.866630361679	1171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATTTATGGTCTATGAAT	NA	False	NA	17	True	AATAAA	-20	NA	84571010	84622816	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231_84606385_84609786_84609987_84612056_84612157_84613153_84613262_84615647_84615664_84618147_84618191_84619674
transcript_22232.known	chr16	+	1998	4	FSM	ENSMUSG00000053062.17	ENSMUST00000098407.3	1998	4	0	0	0	0	multi-exon	FALSE	canonical	3	4189	junction_2	31.1555238547945	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAGTCTTCAGAATAAACAT	NA	False	NA	NA	False	NA	NA	NA	84571273	84607884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_84571442_84598457_84598527_84603722_84603831_84606231
transcript_22239.known	chr16	+	659	7	FSM	ENSMUSG00000053062.17	ENSMUST00000138054.2	659	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	1434.94432722048	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTTACACTTGCAAAGTG	729	False	NA	-10	True	ATTAAA	-17	NA	84606294	84619774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_84606385_84609786_84609987_84612056_84612157_84613153_84613262_84615645_84615664_84618147_84618191_84619674
transcript_22240.known	chr16	+	2202	10	FSM	ENSMUSG00000008976.17	ENSMUST00000114184.8	2202	10	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_1	83.9617784882715	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAATGATATCATTCTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	84631812	84658203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_84631912_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
transcript_22245.known	chr16	+	4987	10	FSM	ENSMUSG00000008976.17	ENSMUST00000009120.8	4987	10	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	99.7045016753055	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGGTTTTTGTTTTC	NA	False	NA	6	True	AATAAA	-15	NA	84632011	84660667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_84632432_84635968_84636072_84638216_84638362_84641169_84641255_84643011_84643258_84649347_84649543_84653349_84653404_84653921_84654063_84654267_84654461_84657262
transcript_22253.nic	chr16	-	751	5	ISM	ENSMUSG00000022890.14	ENSMUST00000114191.8	742	6	428	0	-70	0	3prime_fragment	FALSE	canonical	3	198	junction_4	3188.04854103572	303	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84631963	84624758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_-_84624884_84625312_84625438_84628216_84628396_84630707_84630763_84631696
transcript_22255.known	chr16	-	809	5	FSM	ENSMUSG00000022890.14	ENSMUST00000023608.14	809	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	2792.56360715383	4452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAATGTCCTTTAAATTCT	NA	False	NA	-2	True	AATAAA	-18	NA	84632513	84624758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_84624884_84625312_84625438_84628216_84628396_84631696_84631872_84632308
transcript_2226.nic	chr1	+	2744	14	NIC	ENSMUSG00000026439.15	novel	2856	14	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	277	junction_4	39.7596328248497	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGTACAATAAGTGTTTGA	NA	False	NA	NA	False	AATAAA	-19	NA	132405104	132432629	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
transcript_22263.known	chr16	-	8167	18	FSM	ENSMUSG00000022892.12	ENSMUST00000227723.2	8167	18	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_10	12.3870677065552	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCAGTCTTTCCTCTAGT	7323	False	NA	NA	False	NA	NA	NA	84970654	84746572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_84752321_84759609_84759757_84762557_84762659_84768295_84768350_84774951_84775174_84810514_84810615_84812119_84812249_84821740_84821900_84822310_84822386_84827119_84827254_84837138_84837196_84840463_84840632_84853211_84853415_84876727_84876922_84879663_84879777_84900093_84900224_84917417_84917586_84970389
transcript_22264.known	chr16	-	3120	17	FSM	ENSMUSG00000022892.12	ENSMUST00000226232.2	3120	17	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_10	13.879925927396	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAAAAAATTAAAAAAA	7354	False	NA	NA	False	NA	NA	NA	84970623	84751531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_84752321_84759609_84759757_84762557_84762659_84768295_84768350_84774951_84775174_84810514_84810615_84812119_84812249_84821740_84821900_84822310_84822386_84827119_84827254_84840463_84840632_84853211_84853415_84876727_84876922_84879663_84879777_84900093_84900224_84917417_84917586_84970389
transcript_22267.known	chr16	+	1884	6	FSM	ENSMUSG00000044442.12	ENSMUST00000054442.11	1884	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	18.2931681236466	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCAGCCTTTGTGTAGC	NA	False	NA	1	True	AATAAA	-26	NA	87151072	87165630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87163026_87163169_87164352
transcript_2227.nic	chr1	+	3512	14	NIC	ENSMUSG00000026439.15	novel	3385	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	277	junction_4	39.7596328248497	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAAGTATACATGCTTGT	NA	False	NA	9	True	AATAAA	-18	NA	132405104	132433397	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425746_132431501
transcript_22272.known	chr16	+	1951	5	FSM	ENSMUSG00000044442.12	ENSMUST00000118115.2	1951	5	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_4	12.0208152801713	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGTGG	NA	False	NA	NA	False	AAGAAA	-23	NA	87151132	87164573	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87163026
transcript_22275.known	chr16	+	1700	5	FSM	ENSMUSG00000044442.12	ENSMUST00000118310.8	1700	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	45.8768732587564	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCAGCCTTTGTGTAGC	NA	False	NA	1	True	AATAAA	-26	NA	87151114	87165630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_87151275_87153065_87153153_87153785_87153877_87159407_87159492_87164352
transcript_22278.nnic	chr16	+	492	4	NNC	ENSMUSG00000044442.12	novel	3473	4	NA	NA	-16	-3750	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_3	53.2749680640188	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACAGTCCCTTCTTGGTGTT	NA	False	NA	NA	False	AAAACA	-27	NA	87151098	87158808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_87151275_87153065_87153153_87153785_87153877_87158670
transcript_2228.known	chr1	+	2856	14	FSM	ENSMUSG00000026439.15	ENSMUST00000190997.7	2856	14	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_13	83.2346081867393	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGTACAATAAGTGTTT	NA	False	NA	NA	False	AATAAA	-17	NA	132405104	132432627	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_132405266_132411789_132411816_132412483_132412657_132417325_132417467_132418160_132418324_132420290_132420401_132421552_132421673_132421758_132421913_132422007_132422080_132422594_132422713_132423943_132424014_132424536_132424767_132425667_132425860_132431501
transcript_22281.known	chr16	-	7743	30	FSM	ENSMUSG00000052299.10	ENSMUST00000039449.9	7743	30	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_26	19.3535231547588	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCTGGCCCATTCTTCCT	NA	False	NA	NA	False	AATAAA	-17	NA	87229500	87173538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_87175896_87176563_87176732_87177554_87177750_87178349_87178571_87179502_87179675_87191409_87191597_87194041_87194117_87194674_87194913_87195539_87195754_87196900_87197052_87197216_87197353_87198913_87199057_87200893_87200999_87202413_87202574_87205587_87205775_87206189_87206335_87207194_87207349_87208506_87208747_87209262_87209450_87212041_87212084_87212438_87213249_87215322_87215459_87217060_87217252_87217696_87217871_87220285_87220467_87221716_87221770_87222455_87222687_87223133_87223233_87224476_87224681_87229313
transcript_22282.known	chr16	-	2360	12	FSM	ENSMUSG00000052299.10	ENSMUST00000232095.2	2360	12	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	51.9704302448489	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCTCTTTCCTACTCAG	NA	False	NA	NA	False	NA	NA	NA	87229451	87210075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_87210177_87212041_87212084_87212438_87213249_87215322_87215459_87217060_87217252_87217696_87217871_87220285_87220467_87221716_87221770_87222455_87222687_87223133_87223233_87224476_87224681_87229313
transcript_22283.known	chr16	-	2009	5	FSM	ENSMUSG00000041079.13	ENSMUST00000039101.12	2009	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	7.71362431027076	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCTTGTTATCAGTAG	NA	False	NA	-4	True	AATAAA	-17	NA	87237461	87230294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_87231515_87233460_87233824_87233951_87234020_87234181_87234403_87237324
transcript_22286.known	chr16	+	3205	18	FSM	ENSMUSG00000025616.15	ENSMUST00000026710.12	3205	18	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_5	31.0441141639032	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTATTAGAGTTTAAGT	NA	False	NA	10	True	AATAAA	-18	NA	87251590	87280405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241_87267338_87268599_87268731_87268968_87269057_87269994_87270074_87271469_87271562_87272304_87272362_87273601_87273776_87276013_87276678_87277762_87277858_87278601_87278689_87279747_87279905_87279994
transcript_22294.known	chr16	-	2394	15	FSM	ENSMUSG00000025613.14	ENSMUST00000026704.14	2394	15	0	0	0	0	multi-exon	FALSE	canonical	3	4287	junction_9	381.591725405517	3115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAGGTGAACATAATTTAT	NA	False	NA	-13	True	AATAAA	-28	NA	87292761	87280213	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_87280954_87281691_87281812_87282467_87282633_87282721_87282794_87283123_87283240_87283320_87283409_87283482_87283550_87284421_87284601_87285694_87285833_87287208_87287271_87287372_87287554_87288189_87288340_87290594_87290675_87291224_87291316_87292616
transcript_22322.known	chr16	+	1405	7	FSM	ENSMUSG00000025616.15	ENSMUST00000131206.8	1405	7	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_5	32.3045404445464	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTTGTCTCTACCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	87251930	87267912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_87251991_87255528_87255631_87258852_87259029_87261622_87261727_87263140_87263245_87266562_87266751_87267241
transcript_22324.known	chr16	+	5867	5	FSM	ENSMUSG00000025612.6	ENSMUST00000026703.6	5867	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	14.497844667398	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAGTTGTACATTTCTGT	NA	False	NA	22	True	AATAAA	-25	NA	87495832	87530234	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_87495945_87512218_87512513_87515694_87517039_87519289_87519497_87526324
transcript_22326.known	chr16	+	641	5	FSM	ENSMUSG00000022982.11	ENSMUST00000023707.11	641	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	320.427351360648	301	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAACTGTGTGACTCCTTTG	NA	False	NA	19	True	ATTAAA	-18	NA	90017641	90023217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_90017818_90019667_90019765_90021243_90021314_90022032_90022151_90023037
transcript_22328.known	chr16	-	1333	5	FSM	ENSMUSG00000022978.12	ENSMUST00000099554.5	1333	5	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_1	13.865424623862	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTTTGGTTTTTTTTTT	NA	False	NA	0	True	AATAAA	-25	NA	90524292	90516199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_90516867_90517541_90517639_90518523_90518647_90523180_90523248_90523913
transcript_22329.nic	chr16	-	2006	4	NIC	ENSMUSG00000022978.12	novel	1333	5	NA	NA	2	0	intron_retention	FALSE	canonical	3	279	junction_3	14.0554457615387	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTGTTTGGTTTTTTTTTT	NA	False	NA	0	True	AATAAA	-25	NA	90524290	90516199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_90517639_90518523_90518647_90523180_90523248_90523913
transcript_22330.known	chr16	+	1692	6	FSM	ENSMUSG00000039903.19	ENSMUST00000231280.2	1692	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	5.2687759489278	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTAAGTTCACTCCACAG	NA	False	NA	NA	False	NA	NA	NA	90627875	90701773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_90628321_90672926_90673080_90687417_90687562_90691465_90691544_90694251_90694342_90700991
transcript_22336.known	chr16	-	1430	7	FSM	ENSMUSG00000022972.11	ENSMUST00000023694.11	1430	7	0	0	0	0	multi-exon	FALSE	canonical	3	724	junction_4	16.7994708911389	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGTGTCATGAGAGC	NA	False	NA	2	True	NA	NA	NA	90732002	90722696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_90722971_90723232_90723329_90723985_90724118_90724237_90724397_90726803_90726872_90727881_90728050_90731469
transcript_22337.known	chr16	-	1014	6	FSM	ENSMUSG00000022972.11	ENSMUST00000125519.8	1014	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	296.303493060747	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACACTTGACTGTCAGAA	NA	False	NA	-65	True	CATAAA	-19	NA	90731815	90722857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_90722971_90723232_90723329_90723985_90724118_90724237_90724397_90727881_90728050_90731469
transcript_22341.known	chr16	-	3973	18	FSM	ENSMUSG00000022974.13	ENSMUST00000118522.8	3973	18	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_10	93.8519042470415	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTGTATCTTGCTGG	NA	False	NA	0	True	ATTAAA	-18	NA	90841431	90810924	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_90812067_90813733_90813889_90816050_90816198_90818938_90819006_90819556_90819634_90820225_90820348_90822034_90822180_90822383_90822584_90823917_90824034_90824117_90824218_90827320_90827445_90830985_90831176_90831687_90831906_90832806_90832911_90833355_90833578_90834129_90834307_90839440_90839570_90840893
transcript_22342.known	chr16	+	1099	7	FSM	ENSMUSG00000022971.19	ENSMUST00000117836.8	1099	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	3.19722101554181	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGGCTCTGTCTCTAAT	NA	False	NA	8	True	AATAAA	-20	NA	91169737	91190928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_91169963_91180748_91180842_91181870_91181913_91182829_91182954_91184831_91185005_91188608_91188767_91190644
transcript_22344.known	chr16	+	1850	7	FSM	ENSMUSG00000022969.14	ENSMUST00000023691.12	1850	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	1.63299316185545	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGGTTTGTTCTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	91203122	91222722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_91203261_91204505_91204630_91208770_91208929_91211500_91211668_91216219_91216368_91218620_91218779_91221765
transcript_22345.known	chr16	+	3909	11	FSM	ENSMUSG00000022967.14	ENSMUST00000023689.11	3909	11	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	11.4908659377786	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGATATTTTCTTTATTTA	NA	False	NA	24	True	NA	NA	NA	91282125	91304329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_91282305_91286583_91286708_91289518_91289698_91292036_91292192_91292278_91292421_91293031_91293150_91296291_91296492_91296743_91296878_91298509_91298658_91300272_91300416_91301942
transcript_22351.nnic	chr16	-	354	2	Antisense	novelGene_ENSMUSG00000022967.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	18	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACAAAAGTCCCACGTGCAT	NA	False	NA	NA	False	AATAAA	-27	NA	91293267	91291947	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr16_-_91292210_91293175
transcript_22353.known	chr16	-	2347	7	FSM	ENSMUSG00000022964.15	ENSMUST00000023686.15	2347	7	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_3	6.43989302878722	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGAATCTGAGTCTTTT	NA	False	NA	-6	True	AATAAA	-24	NA	91394688	91371390	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_91373047_91374861_91374920_91377089_91377183_91378582_91378651_91380163_91380277_91383829_91383970_91394469
transcript_22359.known	chr16	-	3276	22	FSM	ENSMUSG00000022962.16	ENSMUST00000232289.2	3276	22	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_21	338.409230453656	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAACTTATCTAGCA	NA	False	NA	NA	False	AATAAA	-12	NA	91443819	91418291	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
transcript_22365.known	chr16	-	1852	11	FSM	ENSMUSG00000022962.16	ENSMUST00000231380.2	1852	11	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_10	453.295984981116	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTTTTGATTTTTTTTTT	NA	False	NA	-2	True	AATAAA	-22	NA	91443813	91430292	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_91430995_91432881_91433051_91433394_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844_91440032_91443771
transcript_22375.known	chr16	-	3246	21	FSM	ENSMUSG00000022962.16	ENSMUST00000156713.8	3246	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	429.171000301745	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTAGCATTTATTTAAGA	1507	False	NA	NA	False	AATAAA	-23	NA	91440034	91418280	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_91418637_91418734_91418851_91419780_91419923_91420258_91420390_91421214_91421353_91422201_91422409_91424914_91425068_91425309_91425562_91426930_91427130_91427493_91427604_91427864_91427960_91430762_91430995_91432881_91433051_91433390_91433481_91433879_91433968_91434817_91434944_91435614_91435684_91436227_91436340_91438099_91438275_91438481_91438578_91439844
transcript_22377.known	chr16	+	8731	12	FSM	ENSMUSG00000022961.19	ENSMUST00000117633.8	8731	12	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_11	92.9729366114073	630	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTCTGGCTTTTATGGAAC	NA	False	NA	26	True	AATAAA	-13	NA	91444393	91476095	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_91444873_91448517_91448685_91451498_91457469_91458988_91459150_91461085_91461233_91461521_91461711_91467351_91467463_91468236_91468354_91472288_91472437_91474292_91474365_91474476_91474593_91475041
transcript_22380.known	chr16	-	762	6	FSM	ENSMUSG00000058240.15	ENSMUST00000141664.9	762	6	0	0	0	0	multi-exon	FALSE	canonical	3	1466	junction_2	55.2268050859363	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTATTTGGTTTTTGTT	9203	False	NA	NA	False	TTTAAA	-2	NA	91525488	91503730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_91504182_91505716_91505762_91509082_91509156_91511636_91511715_91514291_91514364_91525445
transcript_22381.known	chr16	-	600	3	FSM	ENSMUSG00000058240.15	ENSMUST00000128975.8	600	3	0	0	0	0	multi-exon	FALSE	canonical	3	1575	junction_1	12	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTAGG	9205	False	NA	NA	False	NA	NA	NA	91525486	91511227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_91511715_91514291_91514364_91525445
transcript_22382.known	chr16	-	512	3	FSM	ENSMUSG00000058240.15	ENSMUST00000123751.2	512	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	797.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGCCCCTGATTTTTCT	9195	False	NA	NA	False	AATAAA	-21	NA	91525496	91511905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_91512295_91514291_91514364_91525445
transcript_22383.known	chr16	+	1167	7	FSM	ENSMUSG00000022957.21	ENSMUST00000232198.2	1167	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	3.24893144826965	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTATGGTCTCATCATGG	NA	False	NA	NA	False	NA	NA	NA	91700950	91709088	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_91701102_91702174_91702388_91703645_91703768_91705290_91705374_91705653_91705738_91706092_91706267_91708748
transcript_22384.known	chr16	+	1562	7	FSM	ENSMUSG00000022957.21	ENSMUST00000231852.2	1562	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.09945795874961	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTTTGGAGAACTGTG	NA	False	NA	NA	False	TATAAA	-22	NA	91700916	91709224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_91701327_91702174_91702388_91703645_91703768_91705290_91705374_91705653_91705738_91706092_91706267_91708748
transcript_22389.known	chr16	-	838	7	FSM	ENSMUSG00000022956.12	ENSMUST00000023677.10	838	7	0	0	0	0	multi-exon	FALSE	canonical	3	5653	junction_6	394.832348387684	2226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGAGGAGCCTTGTCCTTT	811	False	NA	-1	True	AATAAA	-20	NA	91728575	91722101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91723740_91723871_91725786_91725898_91727241_91727293_91728407
transcript_22395.known	chr16	-	560	6	FSM	ENSMUSG00000022956.12	ENSMUST00000155452.8	560	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	2452.38509210931	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGGGCGTGAGGAGCCTT	952	False	NA	-8	True	AATAAA	-13	NA	91728434	91722108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_91722280_91722428_91722516_91723346_91723460_91725786_91725898_91727241_91727293_91728407
transcript_22398.known	chr16	-	932	3	FSM	ENSMUSG00000022956.12	ENSMUST00000132049.2	932	3	0	0	0	0	multi-exon	FALSE	canonical	3	5653	junction_2	412	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCGCAGCACGGATGCTG	947	False	NA	NA	False	NA	NA	NA	91728439	91725048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_91725898_91727241_91727293_91728407
transcript_2240.known	chr1	-	2010	11	FSM	ENSMUSG00000054387.14	ENSMUST00000185398.7	2010	11	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_6	121.196699625031	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGGACATATCCAGTCA	NA	False	NA	69	True	ATTAAA	-17	NA	132953092	132918964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932431_132936874_132936931_132938802_132938937_132940374_132940453_132946514_132946623_132952985
transcript_22400.known	chr16	+	846	3	FSM	ENSMUSG00000039680.11	ENSMUST00000047429.9	846	3	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	10.5	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGACGGCTGTATTGCTTCT	6285	False	NA	5	True	AATAAA	-17	NA	91855157	91909115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_91855369_91896481_91896622_91908620
transcript_22403.known	chr16	+	517	4	FSM	ENSMUSG00000051989.12	ENSMUST00000063641.11	517	4	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	48.3482735529983	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTCTGCATTCTCTCT	NA	False	NA	26	True	AATAAA	-16	NA	92098173	92109929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_92098232_92102175_92102286_92107688_92107858_92109749
transcript_22404.known	chr16	-	2190	4	FSM	ENSMUSG00000022951.17	ENSMUST00000023672.10	2190	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	123.764112551077	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACGTTGTTGGTCGTTTT	NA	False	NA	-5	True	AATAAA	-22	NA	92196965	92188842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92196783
transcript_22406.known	chr16	-	2319	4	FSM	ENSMUSG00000022951.17	ENSMUST00000232239.2	2319	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	18.4932420089069	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGACGTTGTTGGTCGTTTT	NA	False	NA	-5	True	AATAAA	-22	NA	92263031	92188842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92262720
transcript_22407.known	chr16	-	1506	4	FSM	ENSMUSG00000022951.17	ENSMUST00000232197.2	1506	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	133.157383906747	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGCATATCTTAGTACCT	NA	False	NA	NA	False	GATAAA	-16	NA	92267755	92189397	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_92190517_92192753_92192914_92194150_92194325_92267702
transcript_22416.nic	chr16	-	1814	12	NIC	ENSMUSG00000022948.17	novel	1826	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_11	40.1213036710482	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93400703	93380344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024_93400085_93400453
transcript_22418.nnic	chr16	-	1637	12	NIC	ENSMUSG00000022948.17	novel	2408	12	NA	NA	17	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_11	42.1206452981264	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93400934	93380344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024_93400085_93400861
transcript_22419.known	chr16	-	1826	12	FSM	ENSMUSG00000022948.17	ENSMUST00000233931.2	1826	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_11	41.4330087596355	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	-4	True	AATAAA	-18	NA	93400703	93380347	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024_93400100_93400453
transcript_2242.known	chr1	-	7105	11	FSM	ENSMUSG00000054387.14	ENSMUST00000188090.7	7105	11	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_6	81.9383304687129	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTTGTCATTATTGG	NA	False	NA	-5	True	ATTAAA	-15	NA	132953154	132913957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132952985
transcript_22420.nic	chr16	-	2388	11	NIC	ENSMUSG00000022948.17	novel	2408	12	NA	NA	-16	0	intron_retention	FALSE	canonical	2	8	junction_5	37.6591290393179	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93400719	93380344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387143_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400453
transcript_22421.nic	chr16	-	1770	11	NIC	ENSMUSG00000022948.17	novel	1816	12	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_10	28.7090578041147	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93400719	93380344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400453
transcript_22423.nnic	chr16	-	1684	11	NIC	ENSMUSG00000022948.17	novel	1816	12	NA	NA	-90	0	combination_of_known_splicesites	TRUE	canonical	3	12	junction_10	36.3512035564161	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93401041	93380344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400861
transcript_22426.nnic	chr16	-	1681	10	NIC	ENSMUSG00000022948.17	novel	1816	12	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_6	39.6842475822944	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93400719	93380344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387761_93388192_93393185_93393224_93396099_93396196_93398525_93398687_93400453
transcript_2243.known	chr1	-	1914	11	FSM	ENSMUSG00000054387.14	ENSMUST00000067398.13	1914	11	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_9	94.8116026654966	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTTATTCACTTCCAAA	NA	False	NA	-58	True	AATACA	-15	NA	132953094	132919091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132932391_132932460_132936874_132936931_132938802_132938937_132940374_132940453_132946514_132946623_132952985
transcript_22437.known	chr16	-	934	7	FSM	ENSMUSG00000022948.17	ENSMUST00000233324.2	934	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	57.2996509587973	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGCAGACTGTCTTAG	NA	False	NA	-4	True	AATAAA	-18	NA	93387977	93380347	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387143_93387175_93387761
transcript_22438.known	chr16	-	2408	12	FSM	ENSMUSG00000022948.17	ENSMUST00000123756.8	2408	12	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_5	44.2920435740658	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGTCTTAGTCG	NA	False	NA	-1	True	AATAAA	-21	NA	93400679	93380344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_93380573_93382066_93382191_93383124_93383206_93384706_93384789_93386798_93386974_93387143_93388192_93390134_93390224_93393185_93393224_93396099_93396196_93398525_93398687_93400024_93400085_93400453
transcript_22439.known	chr16	+	593	3	FSM	ENSMUSG00000051483.10	ENSMUST00000231762.2	593	3	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	210.5	473	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTTTGTGGAAGATACAAAG	NA	False	NA	NA	False	GGGGCT	-9	NA	93404776	93406805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_93405143_93405676_93405785_93406686
transcript_22441.known	chr16	+	1170	3	FSM	ENSMUSG00000022947.9	ENSMUST00000039620.7	1170	3	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	11	103	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTATTTGGTTTTTGTTTGT	NA	False	NA	20	True	ATTAAA	-22	NA	93480102	93487878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_93480502_93481934_93482043_93487215
transcript_22443.known	chr16	+	4178	17	FSM	ENSMUSG00000039456.11	ENSMUST00000044068.10	4178	17	0	0	0	0	multi-exon	TRUE	non_canonical	1	193	junction_4	108.324454764379	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGGTAACTGAAAGTTA	974	False	NA	15	True	AATAAA	-26	NA	93629008	93672960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_93629237_93638258_93638332_93641081_93641215_93642027_93642242_93644169_93644319_93646017_93646166_93649976_93650106_93650666_93650787_93652303_93652402_93657380_93657486_93659301_93659425_93659528_93659604_93661847_93661906_93663262_93663427_93667251_93668141_93670124_93670283_93671646
transcript_22445.nnic	chr16	+	1110	6	NNC	ENSMUSG00000022946.11	novel	7319	37	NA	NA	-3387	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	24.2107414178088	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTAATTGTCATGTGTATAG	NA	False	NA	20	True	AATAAA	-23	NA	93602934	93607476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_93603070_93603222_93603360_93604100_93604154_93604705_93604868_93606179_93606310_93606983
transcript_22446.nnic	chr16	-	2019	3	NNC	ENSMUSG00000097768.3	novel	1580	2	NA	NA	-336	-4	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	9	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAACAAATACACCTTTAAAT	6235	False	NA	NA	False	AATAAA	-24	NA	93592125	93589027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_93590271_93590397_93590505_93591456
transcript_22447.nnic	chr16	-	1774	3	NNC	ENSMUSG00000097768.3	novel	1580	2	NA	NA	-164	-14	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	34	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCTAATTGCATAACAAATAC	6407	False	NA	NA	False	AATAAA	-14	NA	93591953	93589037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_93590208_93590397_93590505_93591456
transcript_22448.nnic	chr16	-	1707	3	NNC	ENSMUSG00000097768.3	novel	1580	2	NA	NA	-167	-147	at_least_one_novel_splicesite	FALSE	canonical	3	59	junction_1	9	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGCTGCGTGCTGTTGTG	6404	False	NA	NA	False	TATAAA	-1	NA	93591956	93589170	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_93590271_93590397_93590505_93591456
transcript_22449.known	chr16	-	1580	2	FSM	ENSMUSG00000097768.3	ENSMUST00000180967.3	1580	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATACACCTTTAAATAATA	6571	False	NA	NA	False	AATAAA	-28	NA	93591789	93589023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_93590271_93591456
transcript_22450.known	chr16	+	1189	4	FSM	ENSMUSG00000022946.11	ENSMUST00000226335.2	1189	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	5.24933858267454	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAAAGAAAGCA	NA	False	NA	NA	False	NA	NA	NA	93508818	93537562	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_93508957_93513037_93513201_93536041_93536224_93536856
transcript_22454.known	chr16	+	1922	14	FSM	ENSMUSG00000022945.13	ENSMUST00000023666.11	1922	14	0	0	0	0	multi-exon	FALSE	canonical	3	827	junction_1	52.2487224157954	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGCTGACTTCGCT	4366	False	NA	21	True	AATAAA	-29	NA	93680788	93703003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_93680864_93681353_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
transcript_22458.known	chr16	+	1894	14	FSM	ENSMUSG00000022945.13	ENSMUST00000117099.8	1894	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	247.655157271309	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCCAAATAAACACTCATGAA	4389	False	NA	-17	True	NA	NA	NA	93680811	93702965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_93680864_93681320_93681510_93682246_93682380_93684009_93684128_93684929_93685034_93688387_93688485_93689001_93689087_93689619_93689714_93691624_93691695_93691782_93691875_93696910_93697074_93697812_93698245_93701893_93701986_93702792
transcript_22467.nnic	chr16	+	1224	5	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-569	1916	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	120.524893694207	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2295	False	NA	17	True	NA	NA	NA	93811730	93815011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_93811971_93812291_93812370_93812713_93813006_93814297_93814317_93814416
transcript_22470.nnic	chr16	+	1185	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-705	1916	at_least_one_novel_splicesite	FALSE	canonical	3	174	junction_3	36.1693547388148	151	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2159	False	NA	17	True	NA	NA	NA	93811594	93815011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_93811971_93812291_93812370_93812713_93813006_93814572
transcript_22472.nnic	chr16	+	2627	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-630	1916	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	116.802777744748	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2234	False	NA	17	True	NA	NA	NA	93811669	93815011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_93811971_93812291_93812370_93812713_93814317_93814366
transcript_22474.nnic	chr16	+	1068	4	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-705	1916	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	103.975424446784	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2159	False	NA	17	True	NA	NA	NA	93811594	93815011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_93811971_93812291_93812370_93814297_93814317_93814416
transcript_22480.nnic	chr16	+	1823	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-618	1074	at_least_one_novel_splicesite	FALSE	canonical	3	232	junction_1	14.5	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTGGAGCATGTGTCCT	2246	False	NA	NA	False	NA	NA	NA	93811681	93814169	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_93811971_93812291_93812370_93812713
transcript_22482.nnic	chr16	+	1020	3	NNC	ENSMUSG00000116947.2	novel	452	2	NA	NA	-618	1916	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_1	67.5	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGCTCCGCGTGATTCA	2246	False	NA	17	True	NA	NA	NA	93811681	93815011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_93811971_93812713_93813006_93814572
transcript_22489.known	chr16	+	1531	4	FSM	ENSMUSG00000022941.9	ENSMUST00000023660.9	1531	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	1.63299316185545	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGACAATCATCTTTTT	NA	False	NA	7	True	AATAAA	-15	NA	94129278	94137794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_94129457_94130204_94130281_94134114_94134183_94136585
transcript_22490.known	chr16	+	3630	33	FSM	ENSMUSG00000040785.20	ENSMUST00000151770.8	3630	33	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_31	21.7255385074225	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAGAAAAACATGAAA	NA	False	NA	NA	False	AAAAAG	-25	NA	94171639	94243538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_94171721_94184770_94184926_94185204_94185248_94185642_94185794_94186194_94186283_94188195_94188250_94189123_94189245_94191060_94191147_94192873_94192969_94193970_94194034_94204172_94204228_94209412_94209576_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240046_94240209_94243329
transcript_22491.known	chr16	+	3614	32	FSM	ENSMUSG00000040785.20	ENSMUST00000143145.8	3614	32	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	19.9392417378948	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAGAAAAACATGAAA	NA	False	NA	NA	False	AAAAAG	-25	NA	94171615	94243538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_94171721_94184770_94184926_94185642_94185794_94186194_94186283_94188195_94188250_94189123_94189245_94191060_94191147_94192873_94192969_94193970_94194034_94204172_94204228_94209412_94209576_94210542_94210589_94211691_94211816_94212918_94212983_94216807_94216869_94217140_94217226_94219465_94219601_94220256_94220338_94221106_94221220_94223085_94223207_94224923_94225047_94225945_94226048_94227009_94227103_94227624_94227690_94228649_94228787_94230217_94230545_94232646_94232899_94233974_94234022_94235174_94235232_94236334_94236406_94240043_94240209_94243329
transcript_22492.known	chr16	-	966	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113910.8	966	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_4	95.9283586850104	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171553	94165305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171224
transcript_22493.known	chr16	-	745	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113906.9	745	5	0	0	0	0	multi-exon	TRUE	canonical	3	162	junction_4	117.933243828871	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171571	94165305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171463
transcript_22495.known	chr16	-	758	5	FSM	ENSMUSG00000022940.18	ENSMUST00000113905.8	758	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	183.830084589003	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGAGTAGATCTATATGT	NA	False	NA	NA	False	AATAAA	-28	NA	94171874	94165305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_94165647_94166213_94166333_94168419_94168493_94170947_94171052_94171753
transcript_2250.nic	chr1	-	1958	10	NIC	ENSMUSG00000054387.14	novel	7105	11	NA	NA	3	58	combination_of_known_junctions	FALSE	canonical	3	144	junction_5	94.521537162989	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGTGTTATGTAATGTT	NA	False	NA	0	True	AATACA	-20	NA	132953151	132919033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132936874_132936931_132938802_132938937_132940374_132940450_132946514_132946623_132952985
transcript_22500.known	chr16	-	2547	8	FSM	ENSMUSG00000022898.14	ENSMUST00000023615.7	2547	8	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_4	18.1490428150369	189	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGGACTGCATATTGT	NA	False	NA	-13	True	AATAAA	-23	NA	94327689	94298641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_94299942_94302393_94302547_94302940_94303092_94305160_94305236_94306222_94306304_94311596_94311747_94313088_94313233_94327196
transcript_2251.known	chr1	-	2799	10	FSM	ENSMUSG00000054387.14	ENSMUST00000191212.7	2799	10	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_5	107.251521615728	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATATAAAAGAAAGCATT	NA	False	NA	NA	False	NA	NA	NA	132953095	132918139	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_132919964_132922240_132922322_132924300_132924448_132929020_132929182_132931528_132931629_132936874_132936931_132938802_132938937_132940374_132940453_132946514_132946623_132952985
transcript_22510.nnic	chr16	+	881	5	Intergenic	novelGene_8	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	6.12372435695795	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGTGGTTTCCTGGCCTG	NA	False	NA	8	True	AATAAA	-18	NA	94656093	94670834	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Intergenic_chr16_+_94656205_94659190_94659235_94667462_94667539_94669776_94670200_94670607
transcript_22512.nnic	chr16	+	899	5	Intergenic	novelGene_9	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	11.3247516529061	18	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGTGGTTTCCTGGCCTG	NA	False	NA	8	True	AATAAA	-18	NA	94656093	94670834	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Intergenic_chr16_+_94656205_94659190_94659253_94667462_94667539_94669776_94670200_94670607
transcript_22518.nnic	chr16	+	411	4	Antisense	novelGene_ENSMUSG00000043301.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	11	junction_3	6.94422221866655	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGGCTGCATCACACAGT	NA	False	NA	NA	False	AATAAA	-15	NA	94656104	94668288	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr16_+_94656240_94659190_94659253_94667462_94667539_94668150
transcript_22524.nnic	chr16	+	644	4	NNC	ENSMUSG00000116641.2	novel	1200	5	NA	NA	30374	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	7.71722460186015	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTGAACCATTATTTGTT	909	False	NA	NA	False	AATAAA	-19	NA	94553126	94554297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_+_94553339_94553485_94553564_94553805_94553999_94554136
transcript_22526.nnic	chr16	-	399	3	NNC	ENSMUSG00000117232.2	novel	629	5	NA	NA	78602	-7588	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGTCTTGGTTCTTTCC	NA	False	NA	NA	False	NA	NA	NA	95568368	95565328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_95565561_95567173_95567219_95568246
transcript_22529.known	chr16	-	1044	7	FSM	ENSMUSG00000022913.17	ENSMUST00000023630.16	1044	7	0	0	0	0	multi-exon	FALSE	canonical	3	1101	junction_3	73.0062782688357	1158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTAACTTTATTTTCTTAA	NA	False	NA	-10	True	AATAAA	-16	NA	95792160	95781132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_95781312_95783301_95783439_95784992_95785192_95788492_95788556_95789159_95789312_95790691_95790799_95791953
transcript_22532.known	chr16	-	2382	5	FSM	ENSMUSG00000022914.18	ENSMUST00000113827.4	2382	5	0	0	0	0	multi-exon	TRUE	canonical	3	425	junction_4	11.1214882097676	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTAAGTATTCTATAAAATC	NA	False	NA	45	True	AATAAA	-17	NA	95883726	95867867	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_95869828_95883013_95883074_95883177_95883208_95883321_95883381_95883453
transcript_22541.known	chr16	-	2174	6	FSM	ENSMUSG00000040681.17	ENSMUST00000050884.16	2174	6	0	0	0	0	multi-exon	FALSE	canonical	3	5886	junction_4	404.27841891449	3619	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTGAAGCCATTTATTT	NA	False	NA	NA	False	NA	NA	NA	95928929	95921817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_95923618_95925922_95926046_95928352_95928404_95928510_95928541_95928631_95928662_95928789
transcript_22555.known	chr16	+	2495	5	FSM	ENSMUSG00000023147.18	ENSMUST00000023913.11	2495	5	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_2	29.2350389088163	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGAAAGCGTGCTTC	NA	False	NA	30	True	AATAAA	-24	NA	95946606	95959052	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_95946779_95953012_95953179_95954170_95954239_95955280_95955396_95957078
transcript_22557.known	chr16	+	1101	4	FSM	ENSMUSG00000023147.18	ENSMUST00000233227.2	1101	4	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_2	29.6348143611905	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGGCA	NA	False	NA	NA	False	NA	NA	NA	95946606	95955975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_95946779_95953012_95953179_95954170_95954239_95955280
transcript_22558.known	chr16	+	2415	4	FSM	ENSMUSG00000023147.18	ENSMUST00000233566.2	2415	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	163.242832069963	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGGTACTGTGGAAAGCG	NA	False	NA	24	True	AATAAA	-18	NA	95946612	95959046	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_95946779_95953012_95953179_95955280_95955396_95957078
transcript_22559.nic	chr16	+	700	3	ISM	ENSMUSG00000023147.18	ENSMUST00000233227.2	1101	4	-7	1450	-7	-858	5prime_fragment	FALSE	canonical	3	306	junction_2	22	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATTGCCTTTCTTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	95946599	95954525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr16_+_95946779_95953012_95953179_95954170
transcript_22565.nnic	chr16	-	1606	8	NNC	ENSMUSG00000022938.9	novel	972	8	NA	NA	34	230	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	13.697906886135	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCTGGGGAATGAATGAG	NA	False	NA	NA	False	AATACA	-18	NA	97313696	97271934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_97272424_97276447_97276581_97276934_97277023_97277579_97277631_97279548_97279608_97282986_97283111_97302059_97302204_97313178
transcript_22568.known	chr16	-	806	8	FSM	ENSMUSG00000022938.9	ENSMUST00000231414.2	806	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_7	10.770329614269	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAATGTCACAGGAGTCT	NA	False	NA	-10	True	AATAAA	-24	NA	97313730	97272289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_97272424_97276447_97276581_97276934_97277023_97277579_97277631_97279548_97279608_97282986_97283111_97302059_97302204_97313657
transcript_2257.known	chr1	-	1275	2	FSM	ENSMUSG00000054387.14	ENSMUST00000186645.2	1275	2	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAATAGAAAAAATATT	NA	False	NA	NA	False	AAAAAG	-13	NA	132953076	132945438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_132946623_132952985
transcript_22570.nnic	chr16	-	1251	8	NNC	ENSMUSG00000022938.9	novel	806	8	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_7	13.697906886135	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAATGTCACAGGAGTCT	NA	False	NA	-10	True	AATAAA	-24	NA	97313696	97272289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_97272424_97276447_97276581_97276934_97277023_97277579_97277631_97279548_97279608_97282986_97283111_97302059_97302204_97313178
transcript_22572.nnic	chr16	-	843	8	NNC	ENSMUSG00000022938.9	novel	806	8	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_7	13.0384048104053	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAATGTCACAGGAGTCT	NA	False	NA	-10	True	AATAAA	-24	NA	97313739	97272289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr16_-_97272424_97276447_97276581_97276934_97277023_97277579_97277631_97279548_97279608_97282986_97283111_97302059_97302204_97313629
transcript_22575.nnic	chr16	-	683	7	NIC	ENSMUSG00000022938.9	novel	806	8	NA	NA	-21	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_6	15.0268278607148	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGAATGTCACAGGAGTCT	NA	False	NA	-10	True	AATAAA	-24	NA	97313751	97272289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr16_-_97272424_97276447_97276581_97276934_97277023_97277579_97277631_97279548_97279608_97282986_97283111_97313657
transcript_22576.known	chr16	+	2421	14	FSM	ENSMUSG00000023341.16	ENSMUST00000188251.7	2421	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.87477809337753	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCACTTTGAATTGGGGGA	NA	False	NA	NA	False	AATAAA	-14	NA	97337280	97362100	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_97337374_97339817_97339930_97345667_97345861_97346811_97346950_97347524_97347680_97347946_97348086_97348537_97348737_97352096_97352176_97352595_97352719_97353123_97353267_97357160_97357320_97357801_97357879_97359719_97359969_97361538
transcript_22577.known	chr16	-	3591	8	FSM	ENSMUSG00000005251.16	ENSMUST00000019386.10	3591	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	9.512612465478	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGCAGACTATTATTTCTT	NA	False	NA	2	True	AATAAA	-22	NA	97564987	97543132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_-_97545445_97547059_97547325_97548492_97548597_97549222_97549382_97551292_97551343_97552693_97552843_97556267_97556560_97564727
transcript_22579.known	chr16	+	669	6	FSM	ENSMUSG00000080717.11	ENSMUST00000232308.2	669	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	50.8409283943557	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTCCTCTGATGGTGAA	NA	False	NA	NA	False	NA	NA	NA	97798533	97817315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97811318_97811369_97816865_97816920_97817041
transcript_2258.known	chr1	+	5594	2	FSM	ENSMUSG00000046062.6	ENSMUST00000052529.4	5594	2	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTATGTGACTTTATGTAT	5567	False	NA	15	True	AATAAA	-20	NA	133058880	133067521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_133061354_133064400
transcript_22582.known	chr16	+	1230	5	FSM	ENSMUSG00000080717.11	ENSMUST00000231913.2	1230	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	45.9292934846597	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	14	True	NA	NA	NA	97798563	97817956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97816865_97816920_97817041
transcript_22583.known	chr16	+	546	5	FSM	ENSMUSG00000080717.11	ENSMUST00000232387.2	546	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	48.9508682251909	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGACTGTCTTAGCTACAT	NA	False	NA	NA	False	NA	NA	NA	97798526	97832636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_97798637_97809828_97809956_97810143_97810205_97816865_97816920_97832442
transcript_22584.known	chr16	+	403	4	FSM	ENSMUSG00000080717.11	ENSMUST00000232278.2	403	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	54.6260011349907	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGCCTCCTGGCTGAAG	NA	False	NA	NA	False	NA	NA	NA	97798523	97817150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_97798637_97809828_97809956_97816865_97816920_97817041
transcript_22586.known	chr16	+	1298	3	FSM	ENSMUSG00000080717.11	ENSMUST00000122450.8	1298	3	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	8.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATACTTGAGTCCTGTTTA	NA	False	NA	NA	False	NA	NA	NA	97798522	97811200	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr16_+_97798637_97809828_97809956_97810143
transcript_22587.nnic	chr17	-	1397	5	NNC	ENSMUSG00000116995.2	novel	1210	4	NA	NA	-80	15	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	1.11803398874989	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACCATCCGGCCCTATCA	NA	False	NA	NA	False	TTTAAA	-13	NA	3165150	3162049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_3162848_3162936_3163029_3163562_3163623_3164462_3164621_3164861
transcript_22588.known	chr17	-	1210	4	FSM	ENSMUSG00000116995.2	ENSMUST00000232087.2	1210	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.62466929133727	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGGCAC	NA	False	NA	NA	False	NA	NA	NA	3165070	3162064	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_3162848_3163562_3163623_3164462_3164621_3164861
transcript_22596.known	chr17	-	1402	7	FSM	ENSMUSG00000036983.8	ENSMUST00000041003.8	1402	7	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	6.8414585839246	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAAACCTAACAGCTCAAA	NA	False	NA	NA	False	AATAAA	-16	NA	3608056	3569530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_3570071_3571919_3572048_3586352_3586473_3593371_3593524_3595857_3595967_3605206_3605359_3607855
transcript_226.known	chr1	+	2547	10	FSM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	0	0	0	0	multi-exon	FALSE	canonical	3	1526	junction_2	186.842443693696	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACATGTTTTTTGTCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	4928036	4968128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966_4957055_4959679_4959826_4960962_4961020_4962137_4962293_4963639_4963787_4965156_4965229_4966578
transcript_22601.known	chr17	-	948	4	FSM	ENSMUSG00000004945.16	ENSMUST00000005053.14	948	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	16.0485374896143	784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCGGGGGCGTGTGTGTCTG	3468	False	NA	-8	True	NA	NA	NA	5490518	5461144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_5461743_5483716_5483855_5489806_5489908_5490407
transcript_22603.known	chr17	-	822	4	FSM	ENSMUSG00000004945.16	ENSMUST00000188282.7	822	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	325.783500025537	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGGGAGTGTTGGATGTG	3452	False	NA	NA	False	AATAAA	-13	NA	5490534	5482569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_5483026_5483716_5483855_5489806_5489908_5490407
transcript_22606.known	chr17	-	780	3	FSM	ENSMUSG00000004945.16	ENSMUST00000185896.2	780	3	0	0	0	0	multi-exon	FALSE	canonical	3	677	junction_2	16.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGACTGGTTTCTTTGTCT	3455	False	NA	NA	False	ACTAAA	-15	NA	5490531	5483299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_5483855_5489806_5489908_5490407
transcript_22608.known	chr17	-	1445	1	FSM	ENSMUSG00000101959.2	ENSMUST00000189788.2	1445	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACTGGTTTTTGCCTGTTG	NA	False	NA	NA	False	ATTAAA	-20	NA	5469042	5467597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_5467600_5469000
transcript_22609.known	chr17	+	3331	18	FSM	ENSMUSG00000002365.11	ENSMUST00000002436.11	3331	18	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_6	26.0644662593364	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGCAGATTCCCAAAGTA	NA	False	NA	NA	False	AATAAA	-17	NA	5891603	5982229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_5891822_5937271_5937359_5940349_5940425_5942048_5942175_5949601_5949771_5952638_5952790_5955163_5955249_5958628_5958755_5958856_5958975_5968654_5968786_5970345_5970450_5970844_5970949_5972404_5972483_5974879_5974957_5976346_5976437_5977480_5977596_5978479_5978572_5980844
transcript_22611.known	chr17	-	4007	17	FSM	ENSMUSG00000015659.13	ENSMUST00000097432.10	4007	17	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_6	12.4296457612436	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGACAGCAAGGATGAAGT	2593	False	NA	NA	False	ACTAAA	-45	NA	6130016	6092470	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6111822_6111937_6115223_6115353_6116945_6117068_6117803_6117936_6119573_6119664_6121027_6121165_6122108_6122146_6124430_6124523_6129893
transcript_22613.known	chr17	-	2033	16	FSM	ENSMUSG00000015659.13	ENSMUST00000024570.6	2033	16	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_12	20.0614611188274	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCTCCATCTGTTGTTA	2607	False	NA	-19	True	AATATA	-15	NA	6130002	6094340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_6094526_6095919_6096064_6099105_6099289_6100237_6100336_6100999_6101095_6101964_6102107_6106881_6107033_6110477_6110641_6111822_6111937_6115223_6115353_6116945_6117068_6117803_6117936_6121027_6121165_6122108_6122146_6124430_6124523_6129893
transcript_22618.nic	chr17	-	1585	8	ISM	ENSMUSG00000015659.13	ENSMUST00000097432.10	4007	17	-3	22033	-3	720	5prime_fragment	FALSE	canonical	3	78	junction_3	11.8545608204141	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTCCACATACCAAGAATGA	2590	False	NA	NA	False	GATAAA	-19	NA	6130019	6114503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_6115353_6116945_6117068_6117803_6117936_6119573_6119664_6121027_6121165_6122108_6122146_6124430_6124523_6129893
transcript_22620.known	chr17	+	2245	3	FSM	ENSMUSG00000034345.15	ENSMUST00000039487.10	2245	3	0	0	0	0	multi-exon	FALSE	canonical	3	932	junction_1	74.5	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGTGGAGAGAGCAAGTG	1690	False	NA	NA	False	ATTAAA	-24	NA	6130060	6136792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_6130187_6131076_6131150_6134746
transcript_22622.known	chr17	+	879	3	FSM	ENSMUSG00000034345.15	ENSMUST00000100955.3	879	3	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	535	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCCTTTTACCCTGGGTAT	1834	False	NA	29	True	ATTAAA	-33	NA	6130204	6135407	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_6130350_6131076_6131150_6134746
transcript_22626.known	chr17	+	1613	2	FSM	ENSMUSG00000034345.15	ENSMUST00000146035.2	1613	2	0	0	0	0	multi-exon	FALSE	canonical	3	932	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAAACTGACTATATACC	1741	False	NA	NA	False	AATAAA	-10	NA	6130111	6132614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_6130187_6131076
transcript_22630.known	chr17	+	4499	17	FSM	ENSMUSG00000038141.12	ENSMUST00000232383.2	4499	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	255.117367291508	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGACTTTTTGTTGCTG	NA	False	NA	38	True	AATAAA	-21	NA	6307134	6358589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_6307350_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355643
transcript_22631.nnic	chr17	+	1873	17	NNC	ENSMUSG00000038141.12	novel	4499	17	NA	NA	-2	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_14	271.433348172254	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGACTTTTTGTTGCTG	NA	False	NA	38	True	AATAAA	-21	NA	6307132	6358589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_6307350_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6358271
transcript_22632.known	chr17	+	4405	17	FSM	ENSMUSG00000038141.12	ENSMUST00000088940.6	4405	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	216.5692369082	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGACTTTTTGTTGCTG	NA	False	NA	38	True	AATAAA	-21	NA	6320744	6358589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6355643
transcript_22633.nnic	chr17	+	1710	17	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	-41	-108	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	237.645407790157	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGAACACCGTTTGACCA	NA	False	NA	11	True	AATAAA	-21	NA	6320703	6358481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6358271
transcript_22634.nnic	chr17	+	1818	17	NNC	ENSMUSG00000038141.12	novel	4405	17	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_14	237.645407790157	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGACTTTTTGTTGCTG	NA	False	NA	38	True	AATAAA	-21	NA	6320703	6358589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831_6340954_6345198_6345310_6345996_6346078_6347502_6347603_6348126_6348258_6348423_6348516_6349637_6349696_6351166_6351270_6351676_6351729_6353495_6353579_6354520_6354611_6354851_6354919_6358271
transcript_2264.nnic	chr1	+	584	3	NIC	ENSMUSG00000115958.2	novel	656	3	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	18	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	5605	False	NA	4	True	AATAAA	-16	NA	133251700	133257460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_133251787_133254947_133255079_133257093
transcript_22645.nic	chr17	+	1134	5	ISM	ENSMUSG00000038141.12	ENSMUST00000088940.6	4405	17	-41	17034	-41	-14484	5prime_fragment	FALSE	canonical	3	500	junction_1	49.2620543623589	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCGTGTTTCTTTTCCCC	NA	False	NA	NA	False	AATAAA	-15	NA	6320703	6341555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_6320866_6330872_6330977_6337200_6337257_6339260_6339349_6340831
transcript_2265.known	chr1	+	656	3	FSM	ENSMUSG00000115958.2	ENSMUST00000195286.5	656	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	17.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	5608	False	NA	4	True	AATAAA	-16	NA	133251703	133257460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_133251787_133254872_133255079_133257093
transcript_22651.known	chr17	-	3321	5	FSM	ENSMUSG00000092074.3	ENSMUST00000169415.3	3321	5	0	0	0	0	multi-exon	TRUE	canonical	3	2579	junction_4	2048.76394138027	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	6367775	6358268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_6361219_6361567_6361646_6361983_6362108_6365191_6365234_6367648
transcript_22652.nic	chr17	-	876	2	ISM	ENSMUSG00000092074.3	ENSMUST00000169415.3	3321	5	36	6180	36	-6180	5prime_fragment	FALSE	canonical	3	2579	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAGGAAATGTCTTACA	NA	False	NA	NA	False	NA	NA	NA	6367739	6364448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_6365234_6367648
transcript_22655.known	chr17	+	771	5	FSM	ENSMUSG00000096255.3	ENSMUST00000179569.3	771	5	0	0	0	0	multi-exon	TRUE	canonical	3	3024	junction_1	2440.4692555941	4532	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6697510	6703695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_6697638_6699278_6699321_6702406_6702531_6702868_6702947_6703295
transcript_22657.nnic	chr17	-	1920	18	NNC	ENSMUSG00000096780.8	novel	1413	17	NA	NA	-10156	125	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	314.033178772948	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTGAGTCTGTGGGAGG	2312	False	NA	NA	False	AATAAA	-35	NA	6744577	6708457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836_6716919_6717855_6717874_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
transcript_2266.nnic	chr1	+	756	3	NNC	ENSMUSG00000116158.2	novel	496	2	NA	NA	-1062	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	21.5	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	7792	False	NA	4	True	AATAAA	-16	NA	133253887	133257460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_133254146_133254947_133255079_133257093
transcript_22664.nnic	chr17	-	2017	17	NNC	ENSMUSG00000096780.8	novel	1413	17	NA	NA	-10156	125	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	290.843486421391	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTGAGTCTGTGGGAGG	2312	False	NA	NA	False	AATAAA	-35	NA	6744577	6708457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836_6717034_6719286_6719368_6720054_6720166_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
transcript_22665.nnic	chr17	-	1488	11	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-2337	125	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	340.009411634443	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTGAGTCTGTGGGAGG	NA	False	NA	NA	False	AATAAA	-35	NA	6719481	6708457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_6708878_6709602_6709670_6709910_6710001_6710946_6711030_6712710_6712763_6713169_6713273_6714743_6714802_6715923_6716016_6716181_6716313_6716836_6717034_6719286
transcript_2267.nnic	chr1	+	824	3	NNC	ENSMUSG00000116158.2	novel	496	2	NA	NA	-1055	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	23	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGTGTGTTATTTTTCC	7799	False	NA	4	True	AATAAA	-16	NA	133253894	133257460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_133254146_133254872_133255079_133257093
transcript_22671.nnic	chr17	-	797	6	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10156	-15007	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_1	242.285286387762	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCGTGTTTCTTTTCCCC	2312	False	NA	NA	False	AATAAA	-15	NA	6744577	6723807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_6724073_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
transcript_22673.nnic	chr17	-	676	6	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10156	-15128	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_1	242.285286387762	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTGTTTATCGTTTGTA	2312	False	NA	NA	False	NA	NA	NA	6744577	6723928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_6724073_6724405_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
transcript_22676.nnic	chr17	-	1130	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10156	-15007	at_least_one_novel_splicesite	FALSE	canonical	3	324	junction_3	195.078670028273	76	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGCGTGTTTCTTTTCCCC	2312	False	NA	NA	False	AATAAA	-15	NA	6744577	6723807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
transcript_22679.nnic	chr17	-	1009	5	NNC	ENSMUSG00000096780.8	novel	1626	16	NA	NA	-10156	-15128	at_least_one_novel_splicesite	FALSE	canonical	3	324	junction_3	195.078670028273	93	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCACTGTTTATCGTTTGTA	2312	False	NA	NA	False	NA	NA	NA	6744577	6723928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_6724528_6725999_6726088_6728054_6728111_6734317_6734422_6744415
transcript_22684.nnic	chr17	+	995	7	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-37	351	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4243.08535541454	33	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869153	6875299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_6869236_6870885_6870928_6872661_6872711_6873123_6873344_6874010_6874135_6874472_6874551_6874899
transcript_22688.nnic	chr17	+	775	6	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-37	351	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	4229.55933402051	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869153	6875299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_6869236_6870885_6870928_6872661_6872711_6874010_6874135_6874472_6874551_6874899
transcript_22692.nnic	chr17	+	932	6	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-23	351	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_2	4194.75856754593	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869167	6875299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_6869236_6870885_6870928_6873123_6873344_6874010_6874135_6874472_6874551_6874899
transcript_22694.nnic	chr17	+	841	5	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-23	351	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	3873.29685152068	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869167	6875299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_6869236_6870885_6870928_6873713_6873967_6874472_6874551_6874899
transcript_22697.known	chr17	+	2589	5	FSM	ENSMUSG00000000579.15	ENSMUST00000092966.5	2589	5	0	0	0	0	multi-exon	TRUE	canonical	3	5304	junction_1	1714.27572169707	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	6869069	6877078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472_6874551_6874899
transcript_22698.nnic	chr17	+	829	5	NNC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-21	351	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	3748.28990174186	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869169	6875299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472_6874670_6874899
transcript_2270.known	chr1	+	1592	9	FSM	ENSMUSG00000070645.6	ENSMUST00000094556.3	1592	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	2.17586189819115	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCGGATGGGTTCTTTGGA	6006	False	NA	10	True	AATAAA	-21	NA	133278247	133288063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_133278536_133281864_133282016_133282539_133282664_133283232_133283352_133284122_133284320_133286141_133286262_133286675_133286821_133287071_133287171_133287714
transcript_22702.known	chr17	+	675	4	FSM	ENSMUSG00000000579.15	ENSMUST00000124894.2	675	4	0	0	0	0	multi-exon	FALSE	canonical	3	5304	junction_1	1851.44670160631	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTCGGACTGTCCATCT	NA	False	NA	NA	False	NA	NA	NA	6869202	6874948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_6869236_6870885_6870928_6874010_6874135_6874472
transcript_22703.nnic	chr17	+	627	4	NIC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-16	351	combination_of_known_splicesites	FALSE	canonical	3	27	junction_3	3491.09352495747	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869174	6875299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_6869236_6870885_6870928_6874010_6874135_6874899
transcript_22704.nic	chr17	+	1048	4	NIC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-21	351	intron_retention	FALSE	canonical	3	5304	junction_1	1703.79856660215	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869169	6875299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_6869236_6870885_6870928_6874010_6874551_6874899
transcript_22705.nnic	chr17	+	586	4	NIC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	-21	351	combination_of_known_splicesites	FALSE	canonical	2	48	junction_2	3761.62104535915	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869169	6875299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_6869236_6870885_6870928_6874472_6874551_6874899
transcript_22706.nnic	chr17	+	718	4	NIC	ENSMUSG00000000579.15	novel	2589	5	NA	NA	50	351	combination_of_known_splicesites	FALSE	canonical	3	155	junction_1	4390.69017606825	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6869119	6875299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_6869236_6874010_6874135_6874472_6874551_6874899
transcript_22707.known	chr17	+	3250	3	FSM	ENSMUSG00000000579.15	ENSMUST00000138598.8	3250	3	0	0	0	0	multi-exon	FALSE	canonical	3	5304	junction_1	1594.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGGTGTGTGTCAAACAC	NA	False	NA	NA	False	NA	NA	NA	6869190	6877173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_6869236_6870885_6870928_6874010
transcript_22708.known	chr17	+	493	2	FSM	ENSMUSG00000000579.15	ENSMUST00000149027.8	493	2	0	0	0	0	multi-exon	FALSE	canonical	3	5304	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCAACAACCACATGGTGG	NA	False	NA	NA	False	NA	NA	NA	6869190	6871333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_6869236_6870885
transcript_2271.known	chr1	+	2297	8	FSM	ENSMUSG00000070644.14	ENSMUST00000135222.9	2297	8	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_5	9.79379228628721	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTTGGGATCTGATTAG	NA	False	NA	25	True	ATTAAA	-35	NA	133291309	133308074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_133291757_133293313_133293574_133296487_133296611_133300872_133301016_133302264_133302349_133304643_133304790_133306186_133306261_133307054
transcript_22714.known	chr17	-	771	5	FSM	ENSMUSG00000095677.3	ENSMUST00000179554.3	771	5	0	0	0	0	multi-exon	TRUE	canonical	3	5415	junction_4	1216.82506959711	3283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTCCTTGTAGC	NA	False	NA	NA	False	AATAAA	-16	NA	6923299	6916336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_6916737_6917085_6917164_6917501_6917626_6920709_6920752_6923172
transcript_22722.known	chr17	-	3164	13	FSM	ENSMUSG00000052397.9	ENSMUST00000064234.7	3164	13	0	0	0	0	multi-exon	FALSE	canonical	3	786	junction_7	74.9893973987138	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTTGAGCGTTTATTGAGA	NA	False	NA	1	True	AATAAA	-20	NA	7050183	7005439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_7006867_7007028_7007281_7008361_7008455_7008819_7008981_7009752_7009884_7010088_7010253_7014662_7014760_7020381_7020529_7021384_7021469_7022009_7022285_7023246_7023343_7026877_7026962_7050030
transcript_22723.known	chr17	-	1614	8	FSM	ENSMUSG00000023806.11	ENSMUST00000024572.10	1614	8	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_1	24.1119836409624	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATCGTTCAAGGGCCATG	NA	False	NA	NA	False	NA	NA	NA	7215755	7172114	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_7172520_7172831_7172919_7175430_7175594_7177506_7177711_7178676_7178823_7181355_7181498_7209067_7209156_7215376
transcript_22726.known	chr17	-	2312	4	FSM	ENSMUSG00000052031.9	ENSMUST00000063683.8	2312	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	227.371941980535	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACACACTGTTCCATTCA	NA	False	NA	-19	True	AATAAA	-19	NA	7228555	7222409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_7224424_7225052_7225168_7228135_7228190_7228426
transcript_22728.known	chr17	-	1263	3	FSM	ENSMUSG00000023806.11	ENSMUST00000232602.2	1263	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	43.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAACAAGCTCAGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	7215680	7188267	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_7189139_7209067_7209156_7215376
transcript_2273.known	chr1	-	503	5	FSM	ENSMUSG00000090553.9	ENSMUST00000166915.8	503	5	0	0	0	0	multi-exon	FALSE	canonical	3	3763	junction_3	447.106461035848	3601	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTTCATTCTGGTGGC	NA	False	NA	-9	True	AATAAA	-30	NA	133538029	133531608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_133531815_133534238_133534318_133536634_133536698_133537455_133537483_133537901
transcript_22730.known	chr17	+	1783	9	FSM	ENSMUSG00000094724.9	ENSMUST00000089119.13	1783	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	237.179784130098	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTCTGGCTAGTGCGCAG	NA	False	NA	NA	False	AATAAA	-17	NA	7245993	7266097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_7246498_7248506_7248568_7251537_7251591_7252454_7252513_7256120_7256192_7259079_7259194_7262027_7262074_7263832_7263908_7265296
transcript_22734.known	chr17	+	2189	8	FSM	ENSMUSG00000073471.4	ENSMUST00000097423.3	2189	8	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_4	7.41482244134913	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGTGTCTGACAAGGCTT	NA	False	NA	NA	False	ATTAAA	-18	NA	8164484	8198656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_8165136_8171380_8171469_8188978_8189121_8191655_8191802_8192768_8192973_8194876_8195040_8197549_8197637_8197948
transcript_22739.known	chr17	-	1793	9	FSM	ENSMUSG00000095687.3	ENSMUST00000097420.7	1793	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	240.913852600883	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTCTGGCTAGTGCGCAG	NA	False	NA	NA	False	AATGAA	-17	NA	8366929	8346907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_8347719_8349056_8349132_8350874_8350921_8353735_8353850_8356719_8356791_8360427_8360486_8361349_8361403_8364373_8364435_8366425
transcript_22742.nnic	chr17	-	970	8	NIC	ENSMUSG00000095687.3	novel	1793	9	NA	NA	-65	-518	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	257.416124639638	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGGCTTTTTCTTGT	NA	False	NA	-4	True	AAAAAG	-11	NA	8366682	8347425	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_8347719_8349056_8349132_8350874_8350921_8353735_8353850_8356719_8356791_8361349_8361403_8364373_8364435_8366425
transcript_22745.known	chr17	+	3505	13	FSM	ENSMUSG00000069135.12	ENSMUST00000097419.10	3505	13	0	0	0	0	multi-exon	TRUE	canonical	3	46	junction_7	116.477107908235	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGGTTTATCCTTGTGTT	NA	False	NA	NA	False	AGTAAA	-33	NA	8384332	8415636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8394350_8394411_8401059_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
transcript_22752.known	chr17	+	3077	12	FSM	ENSMUSG00000069135.12	ENSMUST00000024636.15	3077	12	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_6	38.250587420542	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTACAGTGTTGGTTTT	NA	False	NA	30	True	ATTAAA	-22	NA	8384371	8415307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_8384531_8384755_8384810_8387866_8387922_8388359_8388449_8388837_8388976_8391759_8391841_8401059_8401287_8403232_8403346_8405344_8405414_8410229_8410270_8411016_8411114_8413352
transcript_2276.known	chr1	-	360	4	FSM	ENSMUSG00000090553.9	ENSMUST00000166291.8	360	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	1734.66788367879	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTACATTGTTTCATTCTG	NA	False	NA	-14	True	AATAAA	-25	NA	133537970	133531613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_133531815_133536634_133536698_133537455_133537483_133537901
transcript_22761.known	chr17	+	958	5	FSM	ENSMUSG00000023861.18	ENSMUST00000155364.8	958	5	0	0	0	0	multi-exon	FALSE	canonical	2	460	junction_2	254.978920697378	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGAGTGTGACTATATAT	2121	False	NA	4	True	AATAAA	-18	NA	8502593	8516493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_8502794_8512246_8512251_8515366_8515464_8515655_8515789_8515969
transcript_22762.known	chr17	+	555	5	FSM	ENSMUSG00000023861.18	ENSMUST00000124023.8	555	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	407.512576493045	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGACCATGCCAACATTAT	2211	False	NA	NA	False	AAAACA	-15	NA	8502683	8516103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_8502794_8512246_8512328_8515366_8515464_8515655_8515789_8515969
transcript_22765.known	chr17	+	1049	8	FSM	ENSMUSG00000073468.13	ENSMUST00000154553.2	1049	8	0	0	0	0	multi-exon	FALSE	canonical	3	730	junction_5	48.6457414710199	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTCTGGATCAACTGTA	2923	False	NA	NA	False	AATAAA	-19	NA	8529933	8546274	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_8530118_8537675_8537763_8538250_8538334_8539431_8539514_8540631_8540668_8542108_8542168_8543265_8543296_8545786
transcript_22769.known	chr17	+	810	6	FSM	ENSMUSG00000073468.13	ENSMUST00000145276.8	810	6	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	242.374586126516	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATTTTCTGGATCAACTG	2990	False	NA	NA	False	AATAAA	-17	NA	8530000	8546272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_8530118_8539431_8539514_8540631_8540668_8542108_8542168_8543265_8543296_8545786
transcript_22774.nic	chr17	+	2255	8	NIC	ENSMUSG00000062327.11	novel	2046	8	NA	NA	-206	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	9.95295054191449	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTGGATTATTCTCTA	NA	False	NA	10	True	AATAAA	-20	NA	8653048	8661328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_8653569_8654022_8654288_8654942_8655078_8655809_8655872_8655981_8656044_8657444_8657622_8658741_8658872_8660424
transcript_22775.known	chr17	+	2046	8	FSM	ENSMUSG00000062327.11	ENSMUST00000074667.9	2046	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	7.70634511957782	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTGGATTATTCTCTA	NA	False	NA	10	True	AATAAA	-20	NA	8653254	8661328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_8653569_8654022_8654288_8654942_8655078_8655809_8655872_8655981_8656044_8657447_8657622_8658741_8658872_8660424
transcript_22776.known	chr17	+	2471	14	FSM	ENSMUSG00000023868.18	ENSMUST00000115708.2	2471	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.18385685639668	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTTCCTCCAGCAAGC	NA	False	NA	NA	False	AATAAA	-11	NA	9164400	9201223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_9164549_9165627_9165680_9168181_9168325_9170328_9170422_9172568_9172756_9180691_9180835_9181719_9181804_9183396_9183548_9186250_9186407_9188359_9188533_9193554_9193667_9195967_9196049_9197736_9197826_9200364
transcript_22777.known	chr17	+	1853	10	FSM	ENSMUSG00000023873.14	ENSMUST00000151609.2	1853	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	3.01027048536535	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTGCGTGCTCACTGC	NA	False	NA	NA	False	AATAAA	-18	NA	9207188	9227150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_9207254_9210877_9211585_9212427_9212551_9214029_9214090_9215810_9215936_9219959_9220019_9220601_9220778_9224023_9224078_9224524_9224587_9226728
transcript_22778.known	chr17	-	3223	1	FSM	ENSMUSG00000046173.4	ENSMUST00000057190.4	3223	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTGTGGTTCACTT	NA	False	NA	NA	False	AATAAA	-40	NA	9888646	9885423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_9885400_9888600
transcript_22779.nic	chr17	+	2055	9	NIC	ENSMUSG00000023827.9	novel	967	7	NA	NA	-135	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_1	85.5599205235722	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGCAAGTGTTTACACAA	NA	False	NA	28	True	ATTAAA	-19	NA	12337455	12438532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_12337728_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
transcript_22780.known	chr17	+	1915	9	FSM	ENSMUSG00000023827.9	ENSMUST00000024594.9	1915	9	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_3	26.473748790075	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGCAAGTGTTTACACAA	NA	False	NA	28	True	ATTAAA	-19	NA	12338170	12438532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_12338303_12370578_12370837_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
transcript_22784.nnic	chr17	+	1672	8	NNC	ENSMUSG00000023827.9	novel	695	3	NA	NA	31642	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	89.8518054285806	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGCAAGTGTTTACACAA	5665	False	NA	28	True	ATTAAA	-19	NA	12402300	12438532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_12402448_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
transcript_22785.nnic	chr17	+	1596	8	NNC	ENSMUSG00000023827.9	novel	695	3	NA	NA	-21529	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	90.8573674750144	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGCAAGTGTTTACACAA	1566	False	NA	28	True	ATTAAA	-19	NA	12412482	12438532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_12412554_12417638_12417809_12429097_12429260_12429525_12429680_12432341_12432445_12434162_12434239_12435580_12435780_12437871
transcript_22794.known	chr17	-	2092	19	FSM	ENSMUSG00000073460.6	ENSMUST00000163394.3	2092	19	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_10	13.5984067694222	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTACATGGCCAGTGC	2690	False	NA	-8	True	GATAAA	-20	NA	13129117	13107615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113303_13114398_13114485_13116147_13116218_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125425_13127939_13128014_13128348_13128407_13128722
transcript_22795.nnic	chr17	-	1802	19	NNC	ENSMUSG00000073460.6	novel	2092	19	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_18	32.7598821204108	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTACATGGCCAGTGC	2965	False	NA	-8	True	GATAAA	-20	NA	13128842	13107615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113303_13114398_13114485_13116147_13116218_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125425_13127939_13128014_13128348_13128407_13128737
transcript_22799.known	chr17	-	2004	19	FSM	ENSMUSG00000073460.6	ENSMUST00000233474.2	2004	19	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_8	33.1558701951112	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTACATGGCCAGTGC	2974	False	NA	-8	True	GATAAA	-20	NA	13128833	13107615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_13107857_13108962_13109062_13109165_13109342_13109607_13109708_13111022_13111066_13111206_13111261_13111645_13111711_13113246_13113499_13114398_13114485_13116147_13116218_13118419_13118564_13118727_13118805_13122094_13122196_13124392_13124482_13124648_13124773_13125384_13125425_13127939_13128014_13128348_13128407_13128722
transcript_2280.known	chr1	-	653	4	FSM	ENSMUSG00000090553.9	ENSMUST00000172079.2	653	4	0	0	0	0	multi-exon	FALSE	canonical	3	3763	junction_3	471.411356107027	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGGAAGTTTTTGTTAAAA	NA	False	NA	-34	True	AATAAA	-5	NA	133537785	133531633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_133531815_133534238_133534318_133536634_133536698_133537455
transcript_22807.nic	chr17	-	1081	3	ISM	ENSMUSG00000073460.6	ENSMUST00000232982.2	620	8	-62	8097	-9	-8097	5prime_fragment	FALSE	canonical	3	130	junction_1	2	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAACT	2965	False	NA	NA	False	NA	NA	NA	13128842	13127110	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_13128014_13128348_13128407_13128722
transcript_2281.known	chr1	-	4396	18	FSM	ENSMUSG00000102976.7	ENSMUST00000191896.6	4396	18	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_16	96.2094744595279	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCTTATCATTATAACTCA	NA	False	NA	1	True	AATAAA	-21	NA	133589056	133547599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133583082_133583137_133588974
transcript_22812.known	chr17	+	2446	12	FSM	ENSMUSG00000068039.14	ENSMUST00000151287.8	2446	12	0	0	0	0	multi-exon	FALSE	canonical	3	3235	junction_8	179.622239047203	1543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTCCCAAGTGCTGGAATT	NA	False	NA	20	True	NA	NA	NA	13135268	13143954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_13135517_13136684_13136771_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
transcript_22824.known	chr17	+	1902	11	FSM	ENSMUSG00000068039.14	ENSMUST00000089024.13	1902	11	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	1038.79458989735	363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCACCTGGGTTCCTGTCCT	NA	False	NA	-1	True	ATTAAA	-14	NA	13135215	13143443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_13135517_13136929_13137059_13138237_13138336_13138701_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
transcript_22837.known	chr17	-	1219	4	FSM	ENSMUSG00000057388.10	ENSMUST00000079121.4	1219	4	0	0	0	0	multi-exon	FALSE	canonical	3	996	junction_2	30.9120616516523	545	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACCCTTACTGTGTTGTG	NA	False	NA	-9	True	ATTAAA	-18	NA	13135232	13130235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_13130637_13132656_13132889_13134524_13134712_13134833
transcript_22840.known	chr17	+	614	3	FSM	ENSMUSG00000068039.14	ENSMUST00000143961.2	614	3	0	0	0	0	multi-exon	FALSE	canonical	3	3521	junction_2	31.5	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCGTGAATTTGGAGCCT	NA	False	NA	NA	False	AATAAA	-25	NA	13135325	13137266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_13135517_13136684_13136771_13136929
transcript_22842.known	chr17	+	3419	10	FSM	ENSMUSG00000068039.14	ENSMUST00000129632.8	3419	10	0	0	0	0	multi-exon	FALSE	canonical	3	3235	junction_6	171.650232942271	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTCCTGTCCTCAGTTT	NA	False	NA	5	True	ATTAAA	-20	NA	13135335	13143449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_13135517_13136684_13136771_13136929_13138813_13139162_13139345_13139626_13139754_13140989_13141166_13141495_13141620_13142104_13142298_13142416_13142581_13143146
transcript_22843.known	chr17	-	2250	9	FSM	ENSMUSG00000023832.15	ENSMUST00000007005.14	2250	9	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_2	90.2592619901138	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGCTGGGAGGTATGCA	NA	False	NA	NA	False	AATAAA	-19	NA	13179634	13161776	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
transcript_22844.nic	chr17	-	1398	7	ISM	ENSMUSG00000023832.15	ENSMUST00000007005.14	2250	9	-12	2981	-12	-1468	5prime_fragment	FALSE	canonical	3	965	junction_2	78.864158878134	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCACATACTTGTATATGT	NA	False	NA	NA	False	NA	NA	NA	13179646	13164757	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881_13179017_13179495
transcript_22846.known	chr17	-	1800	8	FSM	ENSMUSG00000023832.15	ENSMUST00000159697.2	1800	8	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_2	94.6542580734146	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTATGCAGGGCCCCCAAAA	NA	False	NA	NA	False	NA	NA	NA	13179258	13162329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_13162920_13163286_13163398_13165147_13165303_13166243_13166367_13167400_13167545_13171138_13171257_13175105_13175288_13178881
transcript_22847.known	chr17	-	3187	6	FSM	ENSMUSG00000060475.14	ENSMUST00000159986.8	3187	6	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_1	176.193756983612	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTGTGATTCCTTCCAT	NA	False	NA	NA	False	AATAAA	-20	NA	13211079	13191571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13210963
transcript_22848.known	chr17	-	446	6	FSM	ENSMUSG00000060475.14	ENSMUST00000233867.2	446	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	266.82773469038	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGGTAGACCCAGCAATC	NA	False	NA	NA	False	NA	NA	NA	13213056	13194303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_13194362_13199708_13199837_13200636_13200696_13202343_13202400_13204802_13204841_13212949
transcript_22858.nic	chr17	+	1162	6	NIC	ENSMUSG00000006818.6	novel	5861	5	NA	NA	-9	-262	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	1288.2053563	2814	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTCTGTGTGAATTGCTCT	NA	False	NA	46	True	ATTAAA	-34	NA	13225723	13234241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_13225849_13226747_13226956_13227070_13227274_13229406_13229524_13232319_13232500_13233912
transcript_2286.known	chr1	-	4395	17	FSM	ENSMUSG00000116275.2	ENSMUST00000027736.13	4395	17	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_16	98.6493157604248	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCCTTAGTTCTTATCAT	NA	False	NA	-8	True	AATAAA	-12	NA	133589118	133547608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133588974
transcript_22864.known	chr17	-	1839	3	FSM	ENSMUSG00000038347.16	ENSMUST00000148430.2	1839	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTTGGCCTGGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	13982087	13936697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_13937896_13948183_13948285_13981547
transcript_22865.known	chr17	-	413	2	FSM	ENSMUSG00000046991.13	ENSMUST00000228221.2	413	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTTCTCAGTTCAGTTG	NA	False	NA	NA	False	NA	NA	NA	15163339	15159572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_15159843_15163196
transcript_22868.known	chr17	-	1663	12	FSM	ENSMUSG00000023883.14	ENSMUST00000024657.12	1663	12	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_1	72.874056420468	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACGATGACCTTAAACATCA	NA	False	NA	-19	True	AATAAA	-16	NA	15181535	15165270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_15165447_15166460_15166650_15166916_15167026_15170821_15170978_15172881_15173036_15174276_15174387_15175053_15175204_15175294_15175429_15176245_15176330_15176995_15177127_15179680_15179788_15181372
transcript_22870.known	chr17	+	2523	2	FSM	ENSMUSG00000050088.10	ENSMUST00000164837.3	2523	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACTGGTGCTGTTACTT	NA	False	NA	7	True	AATAAA	-15	NA	15163491	15166196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_15163582_15163763
transcript_22872.known	chr17	+	1466	2	FSM	ENSMUSG00000050088.10	ENSMUST00000174004.2	1466	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGATGTTTAAGGTCATCG	NA	False	NA	8	True	AATAAA	-13	NA	15163530	15165248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_15163582_15163833
transcript_22876.known	chr17	+	1844	12	FSM	ENSMUSG00000116953.2	ENSMUST00000061688.11	1844	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	75.6540626145262	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGGCTCTGTTCTTAA	NA	False	NA	NA	False	NA	NA	NA	15198729	15211167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_15199162_15199762_15199932_15200519_15200660_15201837_15201940_15202561_15202652_15205079_15205178_15206035_15206173_15206979_15207095_15207857_15207961_15208335_15208366_15209159_15209229_15210808
transcript_2288.nic	chr1	-	2746	17	NIC	ENSMUSG00000116275.2	novel	4395	17	NA	NA	2	-1628	combination_of_known_splicesites	FALSE	canonical	3	25	junction_16	101.178060863015	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCCTCACCAAAAACTG	NA	False	NA	NA	False	NA	NA	NA	133589116	133549236	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_133549540_133549854_133549923_133550721_133550889_133552220_133552549_133553585_133553669_133554504_133555009_133561499_133561599_133563734_133563795_133565086_133565198_133566270_133566352_133566570_133566688_133566777_133566982_133568349_133568474_133573464_133573585_133575073_133575268_133581710_133581771_133588993
transcript_22882.nic	chr17	+	2085	18	NIC	ENSMUSG00000036552.20	novel	2535	18	NA	NA	-11	-76	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	59.4887678037601	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACGAATCAAGGTATTTTT	NA	False	NA	NA	False	AATAAA	-24	NA	15261865	15284036	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_15261909_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826_15267925_15268781_15268919_15269725_15269841_15270532_15270636_15271008_15271039_15271832_15271902_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283841
transcript_2289.known	chr1	-	2743	2	FSM	ENSMUSG00000020423.7	ENSMUST00000020692.7	2743	2	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTCTCCTTGGGAGGCG	NA	False	NA	NA	False	TATAAA	-39	NA	134006858	134002907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_134005442_134006649
transcript_22893.nic	chr17	+	1532	11	ISM	ENSMUSG00000116895.2	ENSMUST00000097395.5	1684	12	64	1668	64	-1668	5prime_fragment	FALSE	canonical	0	0	junction_7	68.9100863444532	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTAATGTTTTGGCCCTT	NA	False	NA	NA	False	AAAAAG	-19	NA	15230501	15241043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_15230534_15231134_15231304_15231891_15232032_15233209_15233312_15233933_15234024_15236450_15236549_15237402_15237540_15238346_15238462_15239227_15239331_15239703_15239734_15240527
transcript_22901.known	chr17	+	1342	8	FSM	ENSMUSG00000036552.20	ENSMUST00000231568.2	1342	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	40.5950635382366	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTATTGTCATGTGTTAA	NA	False	NA	NA	False	NA	NA	NA	15273103	15310306	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_15273346_15273475_15273650_15277012_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15310000
transcript_22903.nic	chr17	+	1113	7	ISM	ENSMUSG00000036552.20	ENSMUST00000097393.11	2535	18	396	14860	-11	262	5prime_fragment	FALSE	canonical	3	116	junction_1	52.1621403787161	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACTACTTCTTTTTTGG	NA	False	NA	NA	False	NA	NA	NA	15261865	15269252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_15261909_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15267826_15267925_15268781
transcript_22905.nic	chr17	+	991	6	ISM	ENSMUSG00000116895.2	ENSMUST00000097395.5	1684	12	61	5806	61	-5806	5prime_fragment	FALSE	canonical	3	116	junction_1	50.8173198821032	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAATTTGCTGTATTTGAA	NA	False	NA	NA	False	NA	NA	NA	15230498	15236905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_15230534_15231134_15231304_15231891_15232032_15233209_15233312_15233933_15234024_15236450
transcript_22907.known	chr17	+	788	6	FSM	ENSMUSG00000036552.20	ENSMUST00000226599.2	788	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	84.7216619289305	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTCCCTCTGAATGGAC	NA	False	NA	NA	False	ATTAAA	-20	NA	15261895	15266171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_15261909_15262509_15262679_15263266_15263407_15264584_15264687_15265308_15265399_15265897
transcript_22911.known	chr17	-	752	4	FSM	ENSMUSG00000079710.11	ENSMUST00000179539.9	752	4	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	7.25718035235908	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCATCCTTCAAAATAAATGA	8865	False	NA	NA	False	NA	NA	NA	15230444	15216077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_15216212_15219403_15219560_15222241_15222449_15230189
transcript_22912.nnic	chr17	-	649	3	Antisense	novelGene_ENSMUSG00000116895.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	36	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAACGGGTTCTTTGGAAG	NA	False	NA	NA	False	AATAAA	-16	NA	15241516	15233029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr17_-_15233378_15240017_15240222_15241419
transcript_22913.known	chr17	+	1271	6	FSM	ENSMUSG00000036552.20	ENSMUST00000228803.2	1271	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_5	17.1043854025802	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTATGTTGCCTTTCAT	NA	False	NA	12	True	ATTAAA	-25	NA	15277012	15284492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_15277097_15279021_15279099_15279605_15279732_15280027_15280247_15281330_15281445_15283841
transcript_22915.nnic	chr17	-	1192	5	NNC	ENSMUSG00000097624.3	novel	1179	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	14.4805904575746	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCTTTTCTTTCTTTCT	NA	False	NA	-4	True	GATAAA	-16	NA	15461045	15451842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_15452674_15453032_15453145_15454190_15454265_15460531_15460624_15460962
transcript_22916.known	chr17	-	1179	5	FSM	ENSMUSG00000097624.3	ENSMUST00000181658.2	1179	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	9.14808723176599	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATGTCTCTTTTCTTTCT	NA	False	NA	-8	True	GATAAA	-12	NA	15461045	15451846	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_15452674_15453041_15453145_15454190_15454265_15460531_15460624_15460962
transcript_22918.nnic	chr17	-	757	4	NNC	ENSMUSG00000097624.3	novel	1218	5	NA	NA	0	-4703	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	16.779617264871	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTTAAAGTTTCTTTTCA	NA	False	NA	NA	False	AATACA	-15	NA	15461045	15456549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_15456884_15457287_15457536_15460531_15460624_15460962
transcript_2292.known	chr1	+	1815	12	FSM	ENSMUSG00000026450.15	ENSMUST00000159963.8	1815	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.91760118834204	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTGTGACTTAAAGAAGC	1436	False	NA	NA	False	AATAAA	-18	NA	134038979	134079278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_134039101_134066378_134066511_134067997_134068028_134070977_134071180_134071748_134071806_134072989_134073156_134073328_134073454_134074299_134074424_134076073_134076260_134077113_134077222_134078216_134078344_134078841
transcript_22921.known	chr17	+	4420	11	FSM	ENSMUSG00000014763.9	ENSMUST00000055352.8	4420	11	0	0	0	0	multi-exon	TRUE	canonical	2	12	junction_2	12.6526677028997	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTAAATAGGCCACTGTGT	NA	False	NA	NA	False	AATAAA	-24	NA	15616463	15653700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_15616823_15622006_15623392_15626016_15626198_15627858_15627961_15634940_15635114_15637894_15637988_15643139_15643347_15644531_15644641_15646450_15646538_15651838_15651891_15652028
transcript_22925.nic	chr17	+	2764	2	ISM	ENSMUSG00000014763.9	ENSMUST00000055352.8	4420	11	-27	29316	-27	-4731	5prime_fragment	FALSE	canonical	3	53	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGTTTTTTTTATTTG	NA	False	NA	NA	False	ATTAAA	-17	NA	15616436	15624384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_15616823_15622006
transcript_22926.known	chr17	-	1758	6	FSM	ENSMUSG00000014769.11	ENSMUST00000014913.11	1758	6	0	0	0	0	multi-exon	FALSE	canonical	3	4315	junction_4	304.330741135364	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTGGCTGCACTAGTTG	NA	False	NA	NA	False	NA	NA	NA	15718560	15695282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_15696468_15697576_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
transcript_22927.known	chr17	-	1970	5	FSM	ENSMUSG00000014769.11	ENSMUST00000231341.2	1970	5	0	0	0	0	multi-exon	FALSE	canonical	3	4315	junction_3	328.285698744249	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTTCTTACACTGTGT	NA	False	NA	-13	True	ATTAAA	-15	NA	15718601	15696220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_15697684_15710417_15710548_15713359_15713442_15714677_15714786_15718414
transcript_22928.nic	chr17	+	1661	10	NIC	ENSMUSG00000014767.18	novel	2067	10	NA	NA	3	243	combination_of_known_junctions	FALSE	canonical	3	42	junction_2	107.763229258625	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTTTTTCTAGTTTGT	NA	False	NA	13	True	AGTAAA	-15	NA	15720176	15737440	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_15720287_15721415_15721465_15721573_15721620_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
transcript_22929.nic	chr17	+	1910	10	NIC	ENSMUSG00000014767.18	novel	2067	10	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_2	107.763229258625	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	23	True	AAGAAA	-31	NA	15720176	15737689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_15720287_15721415_15721465_15721573_15721620_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
transcript_2293.known	chr1	+	1839	10	FSM	ENSMUSG00000064246.11	ENSMUST00000153856.8	1839	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	1.61780219761789	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTGGGATCCTAGGGTT	802	False	NA	NA	False	NA	NA	NA	134110141	134117919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_134110291_134110517_134110548_134111234_134111440_134111861_134111919_134112886_134113038_134114242_134114365_134115607_134115732_134116232_134116416_134116934_134117052_134117218
transcript_22933.known	chr17	+	1891	9	FSM	ENSMUSG00000014767.18	ENSMUST00000014911.12	1891	9	0	0	0	0	multi-exon	TRUE	canonical	3	123	junction_2	77.8728932299295	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	23	True	AAGAAA	-31	NA	15720149	15737689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_15720287_15721415_15721465_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
transcript_22936.nic	chr17	+	2019	9	NIC	ENSMUSG00000014767.18	novel	2067	10	NA	NA	3	0	intron_retention	FALSE	canonical	3	87	junction_2	86.7564839075443	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	23	True	AAGAAA	-31	NA	15720176	15737689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_15720287_15721415_15721620_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
transcript_22937.known	chr17	+	12794	8	FSM	ENSMUSG00000014767.18	ENSMUST00000162505.8	12794	8	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	66.6565978791022	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTTTAGAATCTTTAGAAA	NA	False	NA	NA	False	NA	NA	NA	15720149	15748641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_15720287_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15734491_15734660_15735877_15735973_15736965
transcript_22940.known	chr17	+	1652	7	FSM	ENSMUSG00000014767.18	ENSMUST00000118001.8	1652	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_5	125.630963097832	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGCTTGTCTGTT	NA	False	NA	23	True	AAGAAA	-31	NA	15720171	15737689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_15720287_15723226_15723391_15724535_15724910_15727604_15727693_15733791_15733884_15735877_15735973_15736965
transcript_22941.nnic	chr17	-	1039	7	NNC	ENSMUSG00000014771.14	novel	1120	6	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	325.810101473577	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTCAGTACCTCATAATT	NA	False	NA	-14	True	NA	NA	NA	15747568	15741836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_15742056_15742177_15742292_15743064_15743169_15745530_15745663_15746634_15746875_15747252_15747366_15747451
transcript_22943.known	chr17	-	1447	11	FSM	ENSMUSG00000051977.17	ENSMUST00000147532.8	1447	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	3.59026461420325	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAAACAAGCATTTCTATA	NA	False	NA	NA	False	AATAAA	-26	NA	15784602	15773485	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_15773808_15774949_15775018_15775348_15775621_15775827_15775930_15777562_15777720_15777808_15777837_15779284_15779335_15782676_15782785_15783075_15783200_15783482_15783594_15784497
transcript_22945.known	chr17	+	1598	4	FSM	ENSMUSG00000060149.8	ENSMUST00000232328.2	1598	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	5.55777733351102	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACATACTGGAGAGAAACCC	NA	False	NA	NA	False	NA	NA	NA	17171813	17193939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_17171971_17191161_17191289_17191432_17191494_17192686
transcript_22946.known	chr17	+	1964	3	FSM	ENSMUSG00000060149.8	ENSMUST00000190415.2	1964	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	11	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCCCAAGTGGCCTACTC	NA	False	NA	24	True	NA	NA	NA	17171800	17194419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_17171971_17191432_17191494_17192686
transcript_22947.known	chr17	+	2667	4	FSM	ENSMUSG00000096696.2	ENSMUST00000127027.2	2667	4	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_3	31.9826341768293	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGATGCAACATAGTTT	NA	False	NA	NA	False	NA	NA	NA	17284374	17309890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_17284469_17305782_17305910_17306151_17306213_17307505
transcript_22950.known	chr17	+	2684	4	FSM	ENSMUSG00000095990.2	ENSMUST00000147630.2	2684	4	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_3	43.3615292883245	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTCACCTTCTAAGGGAT	NA	False	NA	NA	False	NA	NA	NA	17341676	17367093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_17341800_17362997_17363125_17363366_17363428_17364720
transcript_22958.known	chr17	+	3220	10	FSM	ENSMUSG00000116564.2	ENSMUST00000024620.8	3220	10	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_3	38.1895855495244	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTGGCTTTACTTCA	NA	False	NA	10	True	AATAAA	-15	NA	17594570	17615161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325_17607836_17610229_17610327_17613716
transcript_2296.known	chr1	-	1689	9	FSM	ENSMUSG00000042305.13	ENSMUST00000191237.7	1689	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	283.900923519104	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTTCATGGAAGAACGTT	NA	False	NA	67	True	NA	NA	NA	134289679	134275419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134280712_134280876_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
transcript_22962.known	chr17	+	1596	8	FSM	ENSMUSG00000116564.2	ENSMUST00000232396.2	1596	8	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_3	41.8120185826896	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATTTGTCTTTTGAA	NA	False	NA	NA	False	AATGAA	-20	NA	17594833	17608016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_17594933_17597980_17598120_17598744_17598862_17601073_17601250_17603547_17603637_17605145_17605338_17605842_17605936_17607325
transcript_22964.known	chr17	+	2410	15	FSM	ENSMUSG00000007564.16	ENSMUST00000007708.14	2410	15	0	0	0	0	multi-exon	FALSE	canonical	3	1213	junction_1	77.3781135010385	677	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCTTAGTAATCGGAATGG	NA	False	NA	39	True	AATAAA	-24	NA	21165572	21186178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_21165846_21171604_21171696_21174876_21174978_21176049_21176283_21176966_21177115_21177218_21177375_21178981_21179097_21179201_21179273_21179650_21179786_21180727_21180902_21181214_21181276_21181846_21182002_21182835_21182979_21185500_21185593_21185716
transcript_22968.known	chr17	+	3800	5	FSM	ENSMUSG00000067942.7	ENSMUST00000088811.7	3800	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	17.6405073623181	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTTTCTTTTGTTTGT	NA	False	NA	13	True	AGTAAA	-24	NA	21229202	21249123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_21229249_21231937_21232035_21240333_21240461_21240967_21241097_21245722
transcript_22969.nic	chr17	+	2044	5	NIC	ENSMUSG00000067942.7	novel	2087	6	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_4	20.5836707124847	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGCACATAAGTTCTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	21229179	21263306	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_21229249_21231937_21232035_21240333_21240461_21240967_21241097_21261684
transcript_22970.known	chr17	+	1041	5	FSM	ENSMUSG00000067942.7	ENSMUST00000232354.2	1041	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	15.2807067899361	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCAAACCTCAAGCCTCAC	NA	False	NA	NA	False	NA	NA	NA	21229212	21246252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_21229371_21231937_21232035_21240333_21240461_21240967_21241097_21245722
transcript_22971.known	chr17	+	552	5	FSM	ENSMUSG00000067942.7	ENSMUST00000232663.2	552	5	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_4	19.0394327646598	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACATCCAGCCAGGAACACC	NA	False	NA	NA	False	NA	NA	NA	21229305	21261818	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_21229371_21231937_21232035_21240333_21240461_21240967_21241097_21261684
transcript_22972.known	chr17	+	2090	5	FSM	ENSMUSG00000067942.7	ENSMUST00000232473.2	2090	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	23.6801604724292	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTGGGGTTAAAATTGG	NA	False	NA	NA	False	AATAAA	-41	NA	21229164	21263332	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_21229249_21231937_21232040_21240333_21240461_21240967_21241097_21261684
transcript_22974.known	chr17	+	2832	5	FSM	ENSMUSG00000023882.16	ENSMUST00000165230.8	2832	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	11.7340317027013	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGGCATGTTCCTTGAC	NA	False	NA	NA	False	NA	NA	NA	21643488	21655902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_21643824_21647593_21647634_21647998_21648091_21650456_21650584_21653664
transcript_22975.known	chr17	+	2300	4	FSM	ENSMUSG00000023882.16	ENSMUST00000007884.15	2300	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	13.8884444373331	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACCGTTTTGTTTTCTTT	NA	False	NA	NA	False	AATAAA	-20	NA	21643494	21655416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_21643824_21647998_21648091_21650456_21650584_21653664
transcript_22976.known	chr17	+	822	4	FSM	ENSMUSG00000023882.16	ENSMUST00000167749.2	822	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	10.1980390271856	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTCGTGCTGGAACA	NA	False	NA	NA	False	NA	NA	NA	21643519	21654207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_21643580_21647998_21648091_21650456_21650584_21653664
transcript_22980.known	chr17	+	2574	5	FSM	ENSMUSG00000023892.9	ENSMUST00000039577.8	2574	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	22.3271135617661	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCTTCTCTCTCTCTGT	NA	False	NA	2	True	AATAAA	-18	NA	21670635	21685849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_21670684_21672698_21672790_21676558_21676651_21681922_21682050_21683633
transcript_22982.nnic	chr17	+	856	5	NNC	ENSMUSG00000057409.8	novel	3065	5	NA	NA	-64	-2211	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_4	24.0572234474388	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGTTGTCTGAACAGTAAT	1411	False	NA	NA	False	AATAAA	-16	NA	21709195	21727815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_21709528_21711487_21711579_21720472_21720565_21725242_21725370_21727601
transcript_22983.known	chr17	+	3065	5	FSM	ENSMUSG00000057409.8	ENSMUST00000233158.2	3065	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	50.8527285403645	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGGAAAATGTTTTAATT	1475	False	NA	NA	False	ATTAAA	-13	NA	21709259	21730735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_21709528_21711487_21711579_21720472_21720565_21725242_21725370_21728248
transcript_22986.known	chr17	+	2058	4	FSM	ENSMUSG00000057409.8	ENSMUST00000076664.7	2058	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	54.7073019704764	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATAAAAGTTTA	3733	False	NA	NA	False	CATAAA	-42	NA	21711517	21730026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_21711579_21720472_21720565_21725242_21725370_21728248
transcript_22987.nnic	chr17	+	2217	6	Fusion	ENSMUSG00000117037.2_ENSMUSG00000057409.8	novel	3065	5	NA	NA	-4	832	multi-exon	FALSE	canonical	3	7	junction_3	73.6787622045865	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTTGGTGGCCATTTGG	1471	False	NA	NA	False	AATAAA	-18	NA	21709255	21752089	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr17_+_21709528_21711487_21711579_21720472_21720565_21742853_21742938_21748201_21748329_21750538
transcript_22988.known	chr17	+	3164	5	FSM	ENSMUSG00000051341.7	ENSMUST00000233281.2	3164	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	0.707106781186548	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAAAAAATCATA	NA	False	NA	NA	False	NA	NA	NA	21755800	21782863	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_21756096_21758834_21758933_21775246_21775338_21777396_21777524_21780310
transcript_22990.nnic	chr17	+	2600	7	NNC	ENSMUSG00000067931.7	novel	2652	6	NA	NA	-47	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	39.6880194629171	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCATGGAAAGATTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	21787222	21808961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_21787508_21789310_21789390_21794118_21794219_21803291_21803405_21805041_21805169_21806966_21807278_21807376
transcript_22991.known	chr17	+	2652	6	FSM	ENSMUSG00000067931.7	ENSMUST00000088787.7	2652	6	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_2	15.6025638918737	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCATGGAAAGATTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	21787269	21808961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_21787508_21789310_21789390_21794118_21794219_21803291_21803405_21805041_21805169_21806966
transcript_22992.nnic	chr17	+	2710	6	NNC	ENSMUSG00000067931.7	novel	2652	6	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	38.4010416525385	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCATGGAAAGATTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	21787244	21808961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_21787508_21789277_21789390_21794118_21794219_21803291_21803405_21805041_21805169_21806966
transcript_22996.nnic	chr17	+	2345	5	NNC	ENSMUSG00000035868.10	novel	4354	6	NA	NA	16	576	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_4	12.0933866224478	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACGTTTGTGAGCACCAT	NA	False	NA	NA	False	AATAAA	-14	NA	21869560	21882032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_21869695_21871186_21871266_21875011_21875249_21876434_21876528_21880230
transcript_22997.known	chr17	+	4209	6	FSM	ENSMUSG00000067928.7	ENSMUST00000073312.7	4209	6	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	11.689311356962	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATGTGGAAATTCAATGAG	NA	False	NA	9	True	AATAAA	-24	NA	21926722	21944617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_21926876_21927591_21927704_21928185_21928278_21938027_21938104_21939924_21940052_21940968
transcript_23.known	ERCC-00062	+	1007	1	FSM	ERCC-00062A	DQ516786	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	40	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AATACA	-36	NA	0	1007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00062_+_0_1000
transcript_230.known	chr1	+	2507	9	FSM	ENSMUSG00000025903.15	ENSMUST00000027036.11	2507	9	0	0	0	0	multi-exon	FALSE	canonical	3	734	junction_8	45.3636349403352	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTTTATATAGTACTGTT	NA	False	NA	21	True	AATAAA	-22	NA	4878045	4916962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178_4911356_4915185
transcript_23001.known	chr17	+	640	6	FSM	ENSMUSG00000061544.14	ENSMUST00000182827.8	640	6	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	15.5254629560603	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGTGAATCTGAGATTGTC	NA	False	NA	NA	False	NA	NA	NA	21949775	21964042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_21950033_21955038_21955103_21958415_21958494_21961476_21961604_21962839_21962939_21964027
transcript_23003.nic	chr17	+	1424	6	NIC	ENSMUSG00000061544.14	novel	640	6	NA	NA	-115	634	combination_of_known_junctions	FALSE	canonical	3	20	junction_5	67.9923525111464	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTTCCTTTACCTGTG	NA	False	NA	4	True	AATAAA	-17	NA	21949660	21988957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_21950033_21955038_21955103_21958415_21958494_21961476_21961604_21962839_21962939_21988273
transcript_23007.known	chr17	-	3686	5	FSM	ENSMUSG00000069743.6	ENSMUST00000084141.6	3686	5	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_3	11.3880419739304	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAACTCGAACTTGGTTGT	NA	False	NA	-12	True	NA	NA	NA	22064740	22035865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_22039170_22040050_22040178_22042824_22042873_22059604_22059696_22064624
transcript_23008.known	chr17	-	2735	5	FSM	ENSMUSG00000069743.6	ENSMUST00000232918.2	2735	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	16.8077363139716	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTAAAAATATAGTGAATGT	NA	False	NA	NA	False	NA	NA	NA	22064753	22036848	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_22039170_22040050_22040178_22042824_22042873_22059585_22059696_22064624
transcript_23009.known	chr17	-	2221	5	FSM	ENSMUSG00000078546.9	ENSMUST00000190066.7	2221	5	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_1	2.29128784747792	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACCTAAGAAAATACCTGGT	NA	False	NA	NA	False	NA	NA	NA	22128907	22098550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_22100076_22100938_22101066_22106291_22106340_22127029_22127178_22128534
transcript_23010.nic	chr17	-	642	4	ISM	ENSMUSG00000078546.9	ENSMUST00000190066.7	2221	5	172	2270	-115	-2270	5prime_fragment	FALSE	canonical	2	13	junction_3	1.24721912892465	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGTCTTCATTGCTTTTC	NA	False	NA	NA	False	AATAAA	-21	NA	22128735	22100820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_22101066_22106291_22106340_22127029_22127178_22128534
transcript_23012.nnic	chr17	-	3242	6	NNC	ENSMUSG00000071267.12	novel	3265	6	NA	NA	-37	0	at_least_one_novel_splicesite	TRUE	canonical	3	30	junction_5	22.8508205541945	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22181482	22145940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_22148471_22149346_22149474_22151973_22152095_22160706_22160832_22172868_22172962_22181236
transcript_23013.known	chr17	-	3265	6	FSM	ENSMUSG00000071267.12	ENSMUST00000091879.12	3265	6	0	0	0	0	multi-exon	TRUE	canonical	3	43	junction_3	17.9041894538681	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22181432	22145940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_22148471_22149346_22149474_22151973_22152095_22160706_22160832_22172868_22173035_22181236
transcript_23015.nnic	chr17	-	3266	6	NNC	ENSMUSG00000071267.12	novel	3265	6	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	26.7776025812618	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22181484	22145940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_22148471_22149346_22149474_22151973_22152095_22160757_22160832_22172868_22173035_22181236
transcript_23016.nnic	chr17	-	968	6	NNC	ENSMUSG00000071267.12	novel	3265	6	NA	NA	-37	-1048	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_5	22.8508205541945	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTCTACCATTGGTC	NA	False	NA	NA	False	TATAAA	-21	NA	22181482	22148214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_22148471_22149346_22149474_22151973_22152095_22160706_22160832_22172868_22172962_22181236
transcript_23020.nnic	chr17	-	3192	5	NIC	ENSMUSG00000071267.12	novel	3265	6	NA	NA	-39	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	32.101401838549	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22181484	22145940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_22148471_22149346_22149474_22151973_22152095_22172868_22173035_22181236
transcript_23025.known	chr17	-	2481	3	FSM	ENSMUSG00000071267.12	ENSMUST00000126485.2	2481	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	18	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22181445	22158725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_22160832_22172868_22173035_22181236
transcript_23026.nnic	chr17	+	1602	5	NNC	ENSMUSG00000053347.16	novel	1338	6	NA	NA	-2	18397	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	9.44722181384559	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGATTGTATAAGATCTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	22181530	22231744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_22181801_22207011_22207083_22209759_22209887_22225286_22225364_22230687
transcript_23027.known	chr17	+	2741	4	FSM	ENSMUSG00000053347.16	ENSMUST00000055349.15	2741	4	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_3	5.73488351136175	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGTTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22181532	22213347	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_22181801_22207011_22207083_22209759_22209887_22211072
transcript_23028.known	chr17	+	1598	3	FSM	ENSMUSG00000053347.16	ENSMUST00000153985.8	1598	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	3	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTCACTGGTTGATACTT	NA	False	NA	NA	False	AGTAAA	-15	NA	22181539	22211025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_22181801_22207011_22207083_22209759
transcript_2303.known	chr1	-	3149	8	FSM	ENSMUSG00000042305.13	ENSMUST00000049470.11	3149	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	214.632196074673	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGCTCAACTTGTGAGT	NA	False	NA	-9	True	AATAAA	-16	NA	134289717	134273834	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_134275933_134277820_134277977_134280092_134280174_134282398_134282580_134283297_134283455_134288494_134288663_134289271_134289362_134289499
transcript_23030.known	chr17	-	2872	5	FSM	ENSMUSG00000063383.6	ENSMUST00000080249.6	2872	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	1.11803398874989	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTTGGCTGTTTCCATT	NA	False	NA	NA	False	NA	NA	NA	22385171	22363339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_22365516_22366369_22366497_22369015_22369064_22382167_22382317_22384799
transcript_23032.known	chr17	-	4882	5	FSM	ENSMUSG00000096433.3	ENSMUST00000179996.3	4882	5	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_3	10.6066017177982	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACTATTGAGTCCTTCAG	NA	False	NA	NA	False	NA	NA	NA	22444597	22416245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_22420791_22421656_22421784_22424285_22424334_22442991_22443076_22444519
transcript_23035.known	chr17	-	3474	6	FSM	ENSMUSG00000117284.2	ENSMUST00000233465.2	3474	6	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_5	14.9853261559434	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGCTGTTTGTATTTTAC	NA	False	NA	NA	False	NA	NA	NA	22533818	22504851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_22507883_22508749_22508877_22511388_22511437_22528485_22528579_22532217_22532302_22533727
transcript_23037.nnic	chr17	-	2785	7	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	35.1946965701747	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22580401	22556969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22574061_22574116_22577803_22577897_22578420_22578506_22580148
transcript_23038.nnic	chr17	-	922	7	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	-20	-1863	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_4	35.1946965701747	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTCTATCATTGGTC	NA	False	NA	0	True	TATAAA	-21	NA	22580401	22558832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22574061_22574116_22577803_22577897_22578420_22578506_22580148
transcript_23040.nnic	chr17	-	2731	6	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_3	20.2484567313166	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22580401	22556969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577897_22578420_22578506_22580148
transcript_23042.known	chr17	-	2784	6	FSM	ENSMUSG00000033972.10	ENSMUST00000115535.3	2784	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	24.8997991959775	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGACTTGGTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	22580381	22556969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577970_22578420_22578506_22580148
transcript_23046.nnic	chr17	-	868	6	NNC	ENSMUSG00000033972.10	novel	2784	6	NA	NA	-20	-1863	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_3	20.2484567313166	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTTCTATCATTGGTC	NA	False	NA	0	True	TATAAA	-21	NA	22580401	22558832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_22559089_22559947_22560075_22562620_22562675_22577803_22577897_22578420_22578506_22580148
transcript_23060.known	chr17	+	2935	7	FSM	ENSMUSG00000071266.14	ENSMUST00000088763.13	2935	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	23.5849528301415	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGGTTGTTTTAAGTCT	NA	False	NA	NA	False	NA	NA	NA	22643248	22675670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_22643411_22647461_22647547_22663148_22663273_22665777_22665875_22670059_22670134_22672432_22672560_22673404
transcript_23061.known	chr17	+	2926	7	FSM	ENSMUSG00000071266.14	ENSMUST00000120222.8	2926	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	20.6881608655772	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGGTTGTTTTAAGTCT	NA	False	NA	NA	False	NA	NA	NA	22643239	22675670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_22643411_22647461_22647547_22663148_22663273_22665777_22665875_22670077_22670134_22672432_22672560_22673404
transcript_23075.nnic	chr17	+	3069	5	NNC	ENSMUSG00000117055.3	novel	1733	2	NA	NA	-13406	1030	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	3.26917420765551	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACTGCATCAGTTTTTAG	NA	False	NA	3	True	NA	NA	NA	22893294	22910471	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_22893506_22905293_22905368_22906456_22906513_22906703_22906831_22907870
transcript_23076.nnic	chr17	+	2947	4	NNC	ENSMUSG00000117055.3	novel	1733	2	NA	NA	-13358	1030	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	10.2089285540757	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACTGCATCAGTTTTTAG	NA	False	NA	3	True	NA	NA	NA	22893342	22910471	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_22893506_22906456_22906513_22906703_22906831_22907870
transcript_23079.known	chr17	-	4103	6	FSM	ENSMUSG00000002617.15	ENSMUST00000037057.14	4103	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	2.41660919471891	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTGTAAGTCCTTCC	NA	False	NA	NA	False	AATAAA	-42	NA	23412226	23392842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_23396339_23397248_23397376_23401121_23401207_23410318_23410410_23410650_23410777_23412048
transcript_23081.known	chr17	-	2686	6	FSM	ENSMUSG00000071256.5	ENSMUST00000095606.5	2686	6	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	6.49923072370877	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTCTTTAGCTGGC	6684	False	NA	NA	False	AATAAA	-20	NA	23783212	23775740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_23777287_23778356_23778523_23778607_23778679_23778958_23779077_23780119_23780635_23782942
transcript_23084.known	chr17	-	2104	6	FSM	ENSMUSG00000062012.15	ENSMUST00000115516.11	2104	6	0	0	0	0	multi-exon	TRUE	canonical	3	79	junction_1	5.98665181883831	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTGGCTCTGTGTGCTTG	4823	False	NA	0	True	ATTAAA	-21	NA	23805206	23794817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_23796086_23799085_23799207_23799744_23799837_23800030_23800245_23804411_23804549_23804934
transcript_23087.nic	chr17	-	2115	6	NIC	ENSMUSG00000062012.15	novel	2104	6	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	27.6579102609	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTGGCTCTGTGTGCTTG	4791	False	NA	0	True	ATTAAA	-21	NA	23805238	23794817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_23796086_23799085_23799207_23799744_23799837_23800051_23800245_23804411_23804549_23804934
transcript_23088.nnic	chr17	-	1976	6	NNC	ENSMUSG00000062012.15	novel	2104	6	NA	NA	117	2	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_1	26.5736711803243	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGCCCTTGGCTCTGTG	4996	False	NA	-6	True	ATTAAA	-15	NA	23805033	23794823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_23796137_23799085_23799207_23799744_23799837_23800030_23800245_23804411_23804549_23804934
transcript_23090.known	chr17	-	502	3	FSM	ENSMUSG00000062012.15	ENSMUST00000228298.2	502	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	39	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTGGTGTTATAACTAT	4879	False	NA	NA	False	NA	NA	NA	23805150	23803763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_23803913_23804411_23804549_23804934
transcript_23091.known	chr17	+	1902	7	FSM	ENSMUSG00000023902.19	ENSMUST00000129227.8	1902	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	107.099642078456	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCTGTACTAACTGCTTCA	885	False	NA	NA	False	NA	NA	NA	23819835	23829796	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_23819934_23824478_23824528_23826190_23826363_23826553_23826619_23827081_23827140_23828240_23828441_23828536
transcript_23092.known	chr17	+	2609	7	FSM	ENSMUSG00000023902.19	ENSMUST00000120967.8	2609	7	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_6	80.8484521943508	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGATTTTTTTACTTTT	879	False	NA	35	True	AGTAAA	-19	NA	23819829	23829993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_23819934_23824478_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240_23828441_23828536
transcript_23094.known	chr17	+	2698	6	FSM	ENSMUSG00000023902.19	ENSMUST00000095595.9	2698	6	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	55.9335319821661	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	879	False	NA	28	True	AGTAAA	-12	NA	23819829	23829986	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_23819934_23824478_23824939_23826097_23826363_23826553_23826619_23827081_23827140_23828240
transcript_23096.nic	chr17	+	2479	5	NIC	ENSMUSG00000023902.19	novel	2698	6	NA	NA	-46	0	intron_retention	FALSE	canonical	3	18	junction_2	109.005733794145	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	833	False	NA	28	True	AGTAAA	-12	NA	23819783	23829986	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_23819934_23824478_23824939_23826553_23826619_23827081_23827140_23828240
transcript_23097.known	chr17	+	2368	4	FSM	ENSMUSG00000023902.19	ENSMUST00000115509.8	2368	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	114.030210422014	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTAGTCCTGATTTTTT	879	False	NA	28	True	AGTAAA	-12	NA	23819829	23829986	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_23819934_23824478_23824939_23827081_23827140_23828240
transcript_23098.known	chr17	+	1006	4	FSM	ENSMUSG00000023902.19	ENSMUST00000118369.2	1006	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	124.215762105924	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCACGCCTGTCATCTCTGC	15	False	NA	NA	False	NA	NA	NA	23824487	23828672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_23824939_23826553_23826619_23827081_23827140_23828240
transcript_23100.known	chr17	-	1431	14	FSM	ENSMUSG00000041319.15	ENSMUST00000115490.9	1431	14	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_13	116.170706876108	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTTTGCATTTTATTCC	765	False	NA	-22	True	AATAAA	-13	NA	23892845	23887592	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487_23892714_23892814
transcript_23103.known	chr17	-	1504	13	FSM	ENSMUSG00000041319.15	ENSMUST00000047436.11	1504	13	0	0	0	0	multi-exon	TRUE	canonical	3	423	junction_10	38.5186643070603	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGCATTTTATTCCC	794	False	NA	-21	True	AATAAA	-14	NA	23892816	23887591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889216_23889296_23889335_23889422_23889527_23889614_23889680_23889765_23889882_23892487
transcript_23110.known	chr17	-	1673	11	FSM	ENSMUSG00000041319.15	ENSMUST00000133849.2	1673	11	0	0	0	0	multi-exon	FALSE	canonical	3	423	junction_8	40.7603974465412	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGCATTTTATTCCC	794	False	NA	-21	True	AATAAA	-14	NA	23892816	23887591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_23887861_23887949_23888085_23888169_23888281_23888364_23888428_23888500_23888551_23888820_23888924_23889009_23889082_23889166_23889527_23889614_23889680_23889765_23889882_23892487
transcript_23111.known	chr17	+	1941	10	FSM	ENSMUSG00000043782.10	ENSMUST00000062967.10	1941	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTAAAATTTTATTTTGAC	NA	False	NA	NA	False	AATAAA	-16	NA	23879479	23887595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_23879527_23880741_23881037_23884361_23884578_23884714_23884832_23884915_23885063_23885722_23885921_23886033_23886184_23886522_23886654_23886862_23886984_23887076
transcript_23112.nnic	chr17	+	943	4	NNC	ENSMUSG00000023904.11	novel	693	4	NA	NA	-75	0	at_least_one_novel_splicesite	FALSE	canonical	3	65	junction_1	146.645453011298	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892494	23894201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_23892865_23892942_23893043_23893520_23893650_23893857
transcript_23113.known	chr17	+	597	4	FSM	ENSMUSG00000023904.11	ENSMUST00000179928.2	597	4	0	0	0	0	multi-exon	FALSE	canonical	2	24	junction_1	165.748805928328	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAAAGGGAAAATGTTACC	NA	False	NA	-42	True	NA	NA	NA	23892600	23894148	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_23892678_23892942_23893043_23893520_23893650_23893857
transcript_23115.nic	chr17	+	970	3	NIC	ENSMUSG00000023904.11	novel	946	3	NA	NA	-24	0	intron_retention	FALSE	canonical	3	343	junction_1	29	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892545	23894201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_23893043_23893520_23893650_23893857
transcript_23116.known	chr17	+	946	3	FSM	ENSMUSG00000023904.11	ENSMUST00000024697.5	946	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	200.5	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892581	23894201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_23893043_23893508_23893650_23893857
transcript_23117.known	chr17	+	693	4	FSM	ENSMUSG00000023904.11	ENSMUST00000180140.8	693	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	183.637928786209	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCTCAGCAGCCTTTGG	NA	False	NA	11	True	AATAAA	-19	NA	23892569	23894201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_23892678_23892942_23893043_23893508_23893650_23893857
transcript_23118.known	chr17	-	984	4	FSM	ENSMUSG00000023905.16	ENSMUST00000024698.10	984	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	6.34209919681348	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGGCCTGATCCCTAAC	NA	False	NA	-1	True	AATAAA	-18	NA	23896442	23894418	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_23895021_23895112_23895248_23895492_23895598_23896300
transcript_23120.known	chr17	+	1622	3	FSM	ENSMUSG00000023906.4	ENSMUST00000024699.4	1622	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTGATGTCTCTTGGT	NA	False	NA	9	True	AATAAA	-23	NA	23898222	23901420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_23898382_23898731_23898796_23900021
transcript_23121.known	chr17	+	1078	2	FSM	ENSMUSG00000023906.4	ENSMUST00000233364.2	1078	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGACCTCCAGCTCCAGTTT	NA	False	NA	NA	False	NA	NA	NA	23898632	23900936	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_23898796_23900021
transcript_23122.known	chr17	+	1431	2	FSM	ENSMUSG00000023906.4	ENSMUST00000232719.2	1431	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATGTGTCTGATGTCTCT	NA	False	NA	5	True	AATAAA	-19	NA	23898345	23901416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_23898382_23900021
transcript_23127.nnic	chr17	+	1578	8	NNC	ENSMUSG00000023908.9	novel	2040	8	NA	NA	52	0	at_least_one_novel_splicesite	FALSE	canonical	3	98	junction_3	138.628412436607	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCTCTTCTTGTCCCTTTA	3002	False	NA	32	True	AAAAAG	-43	NA	23945373	23955707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_23945616_23951310_23951799_23952796_23952890_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
transcript_23128.nnic	chr17	+	2037	8	NNC	ENSMUSG00000023908.9	novel	2040	8	NA	NA	-4	0	at_least_one_novel_splicesite	TRUE	canonical	3	50	junction_7	153.550231095195	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTCTTGTCCCTTTATT	2934	False	NA	34	True	AAAAAG	-45	NA	23945305	23955709	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_23945616_23951310_23951799_23952796_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955364_23955468
transcript_23129.known	chr17	+	2040	8	FSM	ENSMUSG00000023908.9	ENSMUST00000024701.9	2040	8	0	0	0	0	multi-exon	FALSE	canonical	3	384	junction_2	52.6761379583211	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATAGCTCTTCTTGTCCCT	2938	False	NA	29	True	AATAAA	-43	NA	23945309	23955704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_23945616_23951310_23951799_23952796_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
transcript_23132.known	chr17	+	2902	7	FSM	ENSMUSG00000023908.9	ENSMUST00000233954.2	2902	7	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	45.7484061653154	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCATAGCTCTTCTTGTC	3071	False	NA	26	True	AATAAA	-40	NA	23945442	23955701	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_23945616_23951310_23953291_23953939_23954047_23954173_23954347_23954536_23954695_23955297_23955376_23955468
transcript_23136.known	chr17	-	2575	3	FSM	ENSMUSG00000023909.5	ENSMUST00000024702.5	2575	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	3.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCGCCTGACCACATTCAT	NA	False	NA	NA	False	AATAAA	-21	NA	23959372	23955159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_23956974_23957113_23957336_23958833
transcript_23139.known	chr17	-	2443	7	FSM	ENSMUSG00000040097.17	ENSMUST00000086325.13	2443	7	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_6	22.386131619574	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAATGTTGTGTGTTTGA	7605	False	NA	NA	False	AATATA	-20	NA	23990496	23974393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_23974919_23975520_23975785_23979177_23979442_23979580_23980091_23981139_23981569_23981949_23982293_23990388
transcript_23140.known	chr17	-	694	3	FSM	ENSMUSG00000023911.13	ENSMUST00000024704.10	694	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTAGTTTTTGTTGTTGT	NA	False	NA	0	True	AATAAA	-26	NA	24005055	23995889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_23996074_23998601_23999031_24004974
transcript_23142.nic	chr17	+	820	5	ISM	ENSMUSG00000039218.18	ENSMUST00000190686.7	8864	15	-26	14730	-26	0	5prime_fragment	FALSE	canonical	3	209	junction_1	15.9275704361965	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAGCAAAAGAAGAAGAAA	NA	False	NA	23	True	NA	NA	NA	24022134	24028980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_24022373_24025905_24026177_24027039_24027148_24027327_24027493_24028942
transcript_23146.known	chr17	-	578	5	FSM	ENSMUSG00000055839.7	ENSMUST00000233593.2	578	5	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	5034.57517448096	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCATTTCTCATTTTTAT	NA	False	NA	-5	True	AGTAAA	-16	NA	24048072	24043713	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24043954_24045559_24045641_24046441_24046548_24047817_24047953_24048056
transcript_23150.known	chr17	-	414	4	FSM	ENSMUSG00000055839.7	ENSMUST00000233519.2	414	4	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_3	5439.43761390418	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATTGACTTTTCTGTTC	NA	False	NA	-36	True	AATAAA	-18	NA	24048088	24043782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24043954_24046441_24046548_24047817_24047923_24048056
transcript_23151.known	chr17	-	537	4	FSM	ENSMUSG00000055839.7	ENSMUST00000069579.7	537	4	0	0	0	0	multi-exon	FALSE	canonical	3	7596	junction_3	2024.23060829431	982	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATTTCTCATTTTTATTT	NA	False	NA	-3	True	AGTAAA	-18	NA	24048110	24043711	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24043954_24046441_24046548_24047817_24047953_24048056
transcript_23155.known	chr17	-	366	3	FSM	ENSMUSG00000055839.7	ENSMUST00000233857.2	366	3	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_2	5504	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGACTTTTCTGTTCCCTC	NA	False	NA	-32	True	AATAAA	-22	NA	24047805	24043778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24043954_24046441_24046548_24047720
transcript_23159.known	chr17	-	581	3	FSM	ENSMUSG00000055839.7	ENSMUST00000232702.2	581	3	0	0	0	0	multi-exon	FALSE	canonical	3	11428	junction_1	404.5	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTACTGCATTTCTCATT	NA	False	NA	-10	True	AGTAAA	-11	NA	24048057	24043718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24043954_24046441_24046548_24047817
transcript_23160.known	chr17	-	442	3	FSM	ENSMUSG00000055839.7	ENSMUST00000233483.2	442	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	5701	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGACTTTTCTGTTCCCTCT	NA	False	NA	-31	True	AATAAA	-23	NA	24047777	24043777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24043954_24046441_24046548_24047617
transcript_23161.known	chr17	-	512	3	FSM	ENSMUSG00000055839.7	ENSMUST00000233796.2	512	3	0	0	0	0	multi-exon	FALSE	canonical	1	11	junction_2	5708.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGACTTTTCTGTTCCCTCT	NA	False	NA	-31	True	AATAAA	-23	NA	24047785	24043777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24043954_24046441_24046548_24047555
transcript_23162.known	chr17	-	1799	5	FSM	ENSMUSG00000024114.16	ENSMUST00000151797.3	1799	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	4.71036092035419	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGGATGCCTTTAA	NA	False	NA	-6	True	NA	NA	NA	24063146	24060025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24061500_24062415_24062585_24062812_24062846_24062930_24062958_24063050
transcript_23168.known	chr17	-	903	3	FSM	ENSMUSG00000024114.16	ENSMUST00000141788.2	903	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	4.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGAGATTAGCAACGCAGG	NA	False	NA	NA	False	NA	NA	NA	24063123	24061219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24061500_24062415_24062846_24062930
transcript_23171.known	chr17	+	1002	4	FSM	ENSMUSG00000024128.14	ENSMUST00000183252.8	1002	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGAGTGGTCCTCACCA	8712	False	NA	NA	False	AATAAA	-18	NA	24160806	24164581	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24160981_24161353_24161475_24161585_24161692_24163980
transcript_23172.known	chr17	+	1253	6	FSM	ENSMUSG00000050762.6	ENSMUST00000059482.6	1253	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	4.88262224629348	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAGAAAAAAAA	4531	False	NA	NA	False	NA	NA	NA	24257117	24264928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24257336_24261027_24261055_24261775_24261939_24263233_24263506_24263832_24264003_24264525
transcript_23173.known	chr17	-	2443	6	FSM	ENSMUSG00000016946.7	ENSMUST00000017090.6	2443	6	0	0	0	0	multi-exon	FALSE	canonical	3	983	junction_3	66.4090355298133	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGCAACTGTGAATATC	NA	False	NA	-22	True	AATAAA	-20	NA	24292459	24266707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24268419_24274898_24275025_24276714_24276811_24278195_24278288_24279216_24279326_24292150
transcript_23176.known	chr17	-	7161	14	FSM	ENSMUSG00000024122.17	ENSMUST00000102927.10	7161	14	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_7	13.9033008723802	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTTGCCATGGAGCCT	NA	False	NA	-3	True	AATAAA	-18	NA	24360569	24292653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24298117_24298465_24298619_24299351_24299410_24306977_24307196_24310394_24310569_24312164_24312262_24312513_24312583_24317067_24317144_24319784_24319883_24320575_24320721_24325800_24325939_24326202_24326246_24329821_24330092_24360410
transcript_23178.known	chr17	-	1724	14	FSM	ENSMUSG00000024122.17	ENSMUST00000115411.8	1724	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	40.8150685713647	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTTTGTTTGCCATGGAG	NA	False	NA	-6	True	AATAAA	-15	NA	24360527	24292656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24292725_24298465_24298619_24299351_24299410_24306977_24307196_24310394_24310569_24312164_24312262_24312513_24312583_24317067_24317144_24319784_24319883_24320575_24320721_24325800_24325939_24326202_24326246_24329821_24330092_24360410
transcript_2318.known	chr1	-	725	4	FSM	ENSMUSG00000042305.13	ENSMUST00000188205.2	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_1	71.4749373323731	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTTGGACTTGTTGATAT	NA	False	NA	NA	False	NA	NA	NA	134289691	134283179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_134283455_134288494_134288663_134289271_134289362_134289499
transcript_23180.known	chr17	-	1526	12	FSM	ENSMUSG00000036820.13	ENSMUST00000129523.3	1526	12	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_9	128.890369200834	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382638	24374806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24380555_24380688_24381949_24382090_24382169_24382307_24382555
transcript_23181.known	chr17	-	1496	11	FSM	ENSMUSG00000036820.13	ENSMUST00000040735.12	1496	11	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_8	20.5156038175824	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382740	24374806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382090_24382169_24382307_24382555
transcript_23187.nic	chr17	-	1545	10	NIC	ENSMUSG00000036820.13	novel	1496	11	NA	NA	-5	0	intron_retention	FALSE	canonical	3	306	junction_8	20.5804653872442	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTGCGTCATGCTTTG	NA	False	NA	-12	True	GATAAA	-20	NA	24382709	24374806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_24375060_24375544_24375647_24376501_24376571_24376713_24376822_24376891_24377037_24377117_24377207_24377283_24377497_24377613_24377669_24381949_24382307_24382555
transcript_232.known	chr1	+	877	8	FSM	ENSMUSG00000025903.15	ENSMUST00000150971.8	877	8	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_6	40.2700070696263	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTTAAAAATCTGATCGCC	NA	False	NA	NA	False	AATAAA	-34	NA	4878052	4911509	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4909609_4909712_4911178
transcript_23203.known	chr17	-	796	4	FSM	ENSMUSG00000024121.14	ENSMUST00000098862.9	796	4	0	0	0	0	multi-exon	FALSE	canonical	2	51	junction_3	1244.06671846811	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTAGAGTGCTCCTGTGT	NA	False	NA	NA	False	NA	NA	NA	24388651	24383126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24383583_24383672_24383857_24388179_24388261_24388576
transcript_23204.known	chr17	-	607	3	FSM	ENSMUSG00000024121.14	ENSMUST00000156061.2	607	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	1543.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTCGGAGATGCTGGTGTT	NA	False	NA	NA	False	GGGGCT	-33	NA	24388040	24383511	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24383583_24383672_24383857_24387688
transcript_23205.known	chr17	-	1183	3	FSM	ENSMUSG00000024121.14	ENSMUST00000024932.12	1183	3	0	0	0	0	multi-exon	FALSE	canonical	3	1416	junction_2	838.5	2672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGGCTTGTGTTCTGGCGC	NA	False	NA	NA	False	AATAAA	-15	NA	24388435	24382839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24383583_24383672_24383857_24388179
transcript_23209.known	chr17	-	2166	10	FSM	ENSMUSG00000024118.15	ENSMUST00000024930.8	2166	10	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_7	23.2426810463471	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCGGGCAGTGGTGGTGC	3337	False	NA	NA	False	NA	NA	NA	24439764	24434027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439108_24439225_24439285_24439490_24439590_24439664
transcript_2321.known	chr1	+	2420	9	FSM	ENSMUSG00000026456.19	ENSMUST00000154237.8	2420	9	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_5	130.869925880624	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATCATTGTCGTCGTGTC	7971	False	NA	39	True	AATAAA	-27	NA	134333518	134339474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134335554_134336226_134337338_134337425_134338230_134338331_134338644
transcript_23213.known	chr17	-	2160	9	FSM	ENSMUSG00000024118.15	ENSMUST00000137648.8	2160	9	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_8	21.2485293608758	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGGCTTGACGGTTAA	3276	False	NA	0	True	AATAAA	-21	NA	24439825	24434212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24434980_24435223_24435415_24436654_24436757_24436862_24436975_24437143_24437238_24438126_24438181_24438704_24439285_24439490_24439590_24439664
transcript_23222.nic	chr17	-	3134	17	NIC	ENSMUSG00000072082.8	novel	4133	17	NA	NA	-10	-1032	combination_of_known_junctions	FALSE	canonical	3	43	junction_16	200.408917902872	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTACTGTGCTTCAACTGA	8756	False	NA	-4	True	AATAAA	-19	NA	24470302	24442203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470154
transcript_23223.known	chr17	-	4133	17	FSM	ENSMUSG00000072082.8	ENSMUST00000115390.5	4133	17	0	0	0	0	multi-exon	FALSE	canonical	3	665	junction_16	77.1289504660863	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATCTTCTATCCCAAATAT	8675	False	NA	NA	False	NA	NA	NA	24470383	24441171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24443321_24443881_24444052_24445448_24445577_24445657_24445758_24449289_24449378_24450284_24450466_24450758_24450883_24453343_24453509_24456054_24456207_24458820_24458899_24459752_24459858_24460361_24460416_24461113_24461308_24462252_24462321_24463453_24463561_24468224_24468380_24470268
transcript_2323.known	chr1	+	1837	9	FSM	ENSMUSG00000026456.19	ENSMUST00000027726.14	1837	9	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_1	53.3666562565053	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATTGTCGTCGTGTCTGGG	7971	False	NA	43	True	AATAAA	-31	NA	134333518	134339478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_134333792_134334050_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
transcript_23235.nic	chr17	+	1037	5	ISM	ENSMUSG00000024130.17	ENSMUST00000136295.2	3139	11	-54	17003	2	-1169	5prime_fragment	FALSE	canonical	3	9	junction_1	7.72576857018122	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTATGATAGTCAGTCCC	NA	False	NA	NA	False	AATAAA	-21	NA	24571021	24585315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_24571226_24579861_24580064_24583450_24583561_24583666_24583932_24585059
transcript_23238.known	chr17	+	1920	9	FSM	ENSMUSG00000034681.18	ENSMUST00000163717.2	1920	9	0	0	0	0	multi-exon	FALSE	canonical	3	410	junction_1	446.592917963328	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAGTGCTGGTTTTAC	913	False	NA	NA	False	AATAAA	-18	NA	24633648	24644869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24633709_24634014_24634137_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
transcript_23240.known	chr17	+	1816	8	FSM	ENSMUSG00000034681.18	ENSMUST00000088512.13	1816	8	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_1	319.314188567323	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGTTTTACTGTCTG	901	False	NA	NA	False	AATAAA	-24	NA	24633636	24644875	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24633709_24637011_24637193_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
transcript_23243.known	chr17	+	1769	8	FSM	ENSMUSG00000034681.18	ENSMUST00000234977.2	1769	8	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	570.995335768505	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGCTGGTTTTACTGTCTG	889	False	NA	NA	False	AATAAA	-24	NA	24633624	24644875	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24633709_24634014_24634137_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
transcript_23246.known	chr17	+	1646	7	FSM	ENSMUSG00000034681.18	ENSMUST00000115371.9	1646	7	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_1	362.779738807019	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGAGTGCTGGTTTTAC	884	False	NA	NA	False	AATAAA	-18	NA	24633619	24644869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24633709_24637430_24637587_24639179_24639372_24640722_24640826_24641123_24641278_24643375_24643518_24644059
transcript_23249.known	chr17	+	2106	1	FSM	ENSMUSG00000034681.18	ENSMUST00000234342.2	2106	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GCAAAAAAAAAAAAAAAAAT	803	False	NA	NA	False	NA	NA	NA	24633538	24635644	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24633500_24635600
transcript_23252.known	chr17	+	1086	7	FSM	ENSMUSG00000024132.7	ENSMUST00000024946.7	1086	7	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	202.517008887868	291	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTTAGCTCTTGTGTTC	4882	False	NA	11	True	TATAAA	-24	NA	24645656	24658294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24645717_24645826_24645914_24652115_24652235_24655151_24655299_24656193_24656316_24656405_24656585_24657922
transcript_23262.known	chr17	-	2574	14	FSM	ENSMUSG00000024137.10	ENSMUST00000056032.9	2574	14	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	25.0001183429152	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTTGTGATTGGGTAG	NA	False	NA	-1	True	AATAAA	-16	NA	24674285	24662752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664526_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
transcript_23264.nic	chr17	-	2618	14	NIC	ENSMUSG00000024137.10	novel	2552	14	NA	NA	37	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_6	16.2546306556464	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAGTTTGTTGTGATTGGG	NA	False	NA	-4	True	AATAAA	-13	NA	24674329	24662755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_24663312_24663387_24663451_24663520_24663664_24663749_24663949_24664095_24664314_24664419_24664529_24664919_24665130_24665487_24665655_24665755_24665909_24666063_24666185_24666271_24666466_24668595_24668708_24670379_24670532_24674108
transcript_23265.known	chr17	-	1377	2	FSM	ENSMUSG00000024137.10	ENSMUST00000226743.2	1377	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAT	7412	False	NA	NA	False	NA	NA	NA	24689165	24684431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24685707_24689063
transcript_23266.known	chr17	+	2627	2	FSM	ENSMUSG00000043445.8	ENSMUST00000053024.8	2627	2	0	0	0	0	multi-exon	FALSE	canonical	3	1130	junction_1	0	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGCCTTCCTCTAATTT	NA	False	NA	25	True	ATTAAA	-22	NA	24689365	24692084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24690124_24690215
transcript_23267.known	chr17	-	3340	9	FSM	ENSMUSG00000024142.16	ENSMUST00000179163.3	3340	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	23.0813777751676	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGAGGCCGATTGCTTTC	9587	False	NA	0	True	AATAAA	-17	NA	24698052	24692524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293_24697433_24697985
transcript_23268.known	chr17	-	3358	9	FSM	ENSMUSG00000024142.16	ENSMUST00000070888.14	3358	9	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_8	10.0374299499424	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTGAGGCCGATTGCTT	9587	False	NA	-2	True	AATAAA	-15	NA	24698052	24692526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293_24697453_24697985
transcript_23269.known	chr17	-	1574	9	FSM	ENSMUSG00000024142.16	ENSMUST00000234335.2	1574	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_8	26.1951808545007	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATGTTGCTCGGGAAGC	9627	False	NA	NA	False	AATAAA	-14	NA	24698012	24694275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24694926_24695019_24695184_24695298_24695424_24696154_24696308_24696403_24696480_24696836_24697000_24697084_24697137_24697293_24697458_24697985
transcript_2327.nic	chr1	+	1878	8	NIC	ENSMUSG00000026456.19	novel	2420	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	337	junction_4	39.0227563122351	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATCATTGTCGTCGTGTC	8185	False	NA	39	True	AATAAA	-27	NA	134333732	134339474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_134334201_134334336_134334410_134334783_134334891_134335311_134335442_134336141_134336226_134337338_134337425_134338230_134338331_134338644
transcript_23279.nic	chr17	-	2654	21	NIC	ENSMUSG00000052752.16	novel	2687	21	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_19	98.6916789805503	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746834	24727823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738087_24738221_24746739
transcript_23280.known	chr17	-	3003	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176652.8	3003	21	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_18	53.1587010751768	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCATGTTCAGATGAGGA	NA	False	NA	NA	False	NA	NA	NA	24746912	24727535	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104_24738221_24746739
transcript_23281.nnic	chr17	-	2780	21	NNC	ENSMUSG00000052752.16	novel	3003	21	NA	NA	-102	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_20	104.924675362853	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24747014	24727823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735571_24737715_24737774_24738104_24738221_24746776
transcript_23282.known	chr17	-	2687	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176086.8	2687	21	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_19	106.585693223809	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746864	24727823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738087_24738221_24746739
transcript_23283.nic	chr17	-	2745	21	NIC	ENSMUSG00000052752.16	novel	2687	21	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	185	junction_18	68.0276414408143	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746939	24727823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733804_24735478_24735574_24737715_24737774_24738104_24738221_24746739
transcript_23284.nic	chr17	-	2779	21	NIC	ENSMUSG00000052752.16	novel	2667	21	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_17	98.1200667549712	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746939	24727823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733841_24735478_24735571_24737715_24737774_24738104_24738221_24746739
transcript_23286.known	chr17	-	2667	21	FSM	ENSMUSG00000052752.16	ENSMUST00000176668.8	2667	21	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_17	106.150647666418	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746824	24727823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731923_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24733686_24733841_24735478_24735574_24737715_24737774_24738104_24738221_24746739
transcript_23290.known	chr17	-	2503	20	FSM	ENSMUSG00000052752.16	ENSMUST00000176353.8	2503	20	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_16	139.813924621282	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGGAGACAGCTTCTTG	NA	False	NA	-7	True	AATAAA	-17	NA	24746820	24727823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24728333_24728505_24728626_24728709_24728842_24728929_24729050_24729222_24729346_24729429_24729547_24729632_24729673_24730288_24730372_24730545_24730674_24730749_24730799_24730986_24731061_24731142_24731361_24731929_24732059_24732166_24732351_24732872_24732907_24733098_24733192_24735478_24735574_24737715_24737774_24738104_24738221_24746739
transcript_23296.known	chr17	-	1575	9	FSM	ENSMUSG00000079657.11	ENSMUST00000035797.16	1575	9	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_8	7.78520230951001	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGGAAAACCACCTCCT	NA	False	NA	-2	True	AATAAA	-23	NA	24752862	24748027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24748618_24748714_24748792_24748887_24748945_24749028_24749095_24749364_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
transcript_23298.nnic	chr17	-	1345	8	NIC	ENSMUSG00000079657.11	novel	1575	9	NA	NA	-19	1	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	28.0393309769091	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTGTCATCTGTGGAAA	NA	False	NA	-12	True	AATAAA	-13	NA	24752719	24748037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_24748618_24748887_24748945_24749028_24749095_24749364_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
transcript_23299.known	chr17	-	1658	8	FSM	ENSMUSG00000079657.11	ENSMUST00000177441.2	1658	8	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_7	7.80894306783797	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTGTCATCTGTGGAA	NA	False	NA	-13	True	AATAAA	-12	NA	24752686	24748038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24748618_24748714_24748792_24748887_24748945_24749028_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
transcript_233.known	chr1	+	930	8	FSM	ENSMUSG00000025903.15	ENSMUST00000115529.8	930	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_6	273.277312991617	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGGTAAGATGTAAGTG	NA	False	NA	NA	False	NA	NA	NA	4878133	4915575	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_4878206_4878677_4878710_4898806_4898873_4900490_4900539_4902533_4902605_4907223_4907298_4911178_4911356_4915185
transcript_23300.nic	chr17	-	1517	8	NIC	ENSMUSG00000079657.11	novel	1575	9	NA	NA	-19	0	intron_retention	FALSE	canonical	3	65	junction_7	8.15412753876019	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTGTCATCTGTGGAA	NA	False	NA	-13	True	AATAAA	-12	NA	24752719	24748038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_24748618_24748714_24748945_24749028_24749095_24749364_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
transcript_23301.nic	chr17	-	1789	7	NIC	ENSMUSG00000079657.11	novel	1658	8	NA	NA	-21	0	intron_retention	FALSE	canonical	3	65	junction_6	8.12403840463596	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGTGTCATCTGTGGAA	NA	False	NA	-13	True	AATAAA	-12	NA	24752721	24748038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_24748618_24748714_24748945_24749028_24749418_24749616_24749684_24749759_24749802_24751185_24751297_24752350
transcript_23303.known	chr17	+	298	2	FSM	ENSMUSG00000093565.2	ENSMUST00000176921.2	298	2	0	0	0	0	multi-exon	TRUE	canonical	3	77	junction_1	0	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTTTCAGACGTTGTG	4764	False	NA	14	True	AATAAA	-17	NA	24747221	24747718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24747411_24747609
transcript_23304.known	chr17	-	693	2	FSM	ENSMUSG00000052752.16	ENSMUST00000176361.2	693	2	0	0	0	0	multi-exon	FALSE	canonical	3	406	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCGAAAACTTGCCCACCCA	NA	False	NA	NA	False	NA	NA	NA	24746758	24737546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24738221_24746739
transcript_23305.known	chr17	+	477	1	FSM	ENSMUSG00000093565.2	ENSMUST00000176215.2	477	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGGTTTCAGACGTTGT	4783	False	NA	13	True	AATAAA	-16	NA	24747240	24747717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24747200_24747700
transcript_23307.known	chr17	+	893	6	FSM	ENSMUSG00000041429.4	ENSMUST00000234635.2	893	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	84.8042451767599	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGGGTGGTAAACTTTGGG	945	False	NA	-47	True	NA	NA	NA	24851692	24857753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24851738_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
transcript_23309.known	chr17	+	1079	6	FSM	ENSMUSG00000041429.4	ENSMUST00000047611.4	1079	6	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_2	26.3772629360971	273	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTGGCCCGTTGGCTT	908	False	NA	11	True	AATAAA	-23	NA	24851655	24857811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24851829_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
transcript_23310.known	chr17	+	2084	6	FSM	ENSMUSG00000041429.4	ENSMUST00000234308.2	2084	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	84.8042451767599	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTTCTTGGCCCGTTGGCT	906	False	NA	10	True	AATAAA	-22	NA	24851653	24857810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24852833_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
transcript_23312.nnic	chr17	+	977	6	NNC	ENSMUSG00000041429.4	novel	1079	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	95.2189056857933	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTGGCCCGTTGGCTT	905	False	NA	11	True	AATAAA	-23	NA	24851652	24857811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_24851724_24852900_24853140_24853698_24853870_24854561_24854722_24857397_24857504_24857581
transcript_23314.nnic	chr17	+	917	5	NIC	ENSMUSG00000041429.4	novel	1079	6	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_2	98.3142283700584	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTGGCCCGTTGGCTT	899	False	NA	11	True	AATAAA	-23	NA	24851646	24857811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_24851829_24852900_24853140_24854561_24854722_24857397_24857504_24857581
transcript_23321.nic	chr17	-	1273	2	ISM	ENSMUSG00000002504.16	ENSMUST00000019684.13	1717	6	4227	0	4194	0	3prime_fragment	FALSE	canonical	3	161	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCGCCTGTGTGTTTT	NA	False	NA	-6	True	ATTAAA	-17	NA	24859737	24858259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_24859364_24859568
transcript_23322.nic	chr17	-	789	2	ISM	ENSMUSG00000002504.16	ENSMUST00000019684.13	1717	6	4227	484	4194	0	3prime_fragment	FALSE	canonical	3	161	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTTCTTACCCACCCTGT	NA	False	NA	0	True	AATAAA	-21	NA	24859737	24858743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_24859364_24859568
transcript_23323.known	chr17	-	1717	6	FSM	ENSMUSG00000002504.16	ENSMUST00000019684.13	1717	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	50.6501727539008	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGCGCCTGTGTGTTTT	NA	False	NA	-6	True	ATTAAA	-17	NA	24863964	24858259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24859364_24859568_24859632_24860682_24860727_24860792_24860947_24861164_24861345_24863792
transcript_23324.known	chr17	-	638	2	FSM	ENSMUSG00000071230.8	ENSMUST00000095544.6	638	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGCGTGTGACCCTTTTT	8957	False	NA	NA	False	AATAAA	-20	NA	24877431	24876303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24876479_24876968
transcript_23325.known	chr17	-	1965	4	FSM	ENSMUSG00000007021.6	ENSMUST00000007236.5	1965	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	5.18544972870135	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTAAGGTCCCCTGGACTTA	NA	False	NA	-1	True	AATAAA	-23	NA	24908929	24904065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24905415_24905492_24905636_24906476_24906715_24908694
transcript_23327.known	chr17	-	1177	4	FSM	ENSMUSG00000040888.11	ENSMUST00000234520.2	1177	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	273.584843634779	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCTGGTTTCTGTGTGCT	NA	False	NA	-10	True	AATAAA	-14	NA	24915086	24912163	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24912587_24913141_24913417_24914227_24914425_24914804
transcript_23328.known	chr17	-	682	3	FSM	ENSMUSG00000040888.11	ENSMUST00000234235.2	682	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	299	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTGATTTCTGGATGTA	NA	False	NA	6	True	ATTAAA	-27	NA	24915064	24913158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24913417_24914227_24914392_24914804
transcript_23329.known	chr17	-	1776	3	FSM	ENSMUSG00000040888.11	ENSMUST00000046839.10	1776	3	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_2	47.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGCTGGTTTCTGTGTGCT	NA	False	NA	-10	True	AATAAA	-14	NA	24915130	24912163	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24913417_24914227_24914425_24914804
transcript_2333.known	chr1	+	3123	8	FSM	ENSMUSG00000026457.15	ENSMUST00000027727.15	3123	8	0	0	0	0	multi-exon	FALSE	canonical	3	879	junction_4	75.4485904170407	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTTGGTTCCATTC	NA	False	NA	8	True	NA	NA	NA	134343115	134361089	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_134343324_134350658_134350894_134351695_134351813_134352488_134352661_134353646_134353834_134355819_134356008_134358794_134358989_134359267
transcript_23332.known	chr17	-	5226	22	FSM	ENSMUSG00000040688.17	ENSMUST00000126319.8	5226	22	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_14	40.675587289682	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCTGGGCTACAGTACAG	NA	False	NA	NA	False	NA	NA	NA	24926634	24916922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24919760_24919849_24920009_24920093_24920166_24920253_24920358_24920576_24920636_24920715_24920873_24920950_24921022_24921118_24921350_24921449_24921598_24922211_24922316_24922965_24923025_24923109_24923252_24923340_24923523_24923605_24923700_24923784_24923861_24924120_24924292_24924370_24924456_24924538_24924681_24924774_24924823_24924908_24925005_24925088_24925141_24926497
transcript_23343.known	chr17	+	998	6	FSM	ENSMUSG00000044533.16	ENSMUST00000170715.8	998	6	0	0	0	0	multi-exon	FALSE	canonical	3	3280	junction_1	2855.80020309545	8152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTATGTTTTTTTTTGTCTG	6190	False	NA	1	True	AATAAA	-20	NA	24939036	24940900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24939107_24939246_24939427_24939507_24939706_24939942_24940277_24940596_24940689_24940776
transcript_2335.known	chr1	+	3446	8	FSM	ENSMUSG00000026457.15	ENSMUST00000112237.2	3446	8	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	322.905874956825	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGATGTCTTGGTTCCA	NA	False	NA	5	True	NA	NA	NA	134343193	134361086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_134343728_134350658_134350894_134351695_134351813_134352488_134352661_134353646_134353834_134355819_134356008_134358794_134358989_134359267
transcript_23357.known	chr17	-	183	2	FSM	ENSMUSG00000090101.2	ENSMUST00000161706.2	183	2	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_1	0	200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATCGTATGTTGGTGTTT	4301	False	NA	-8	True	AATAAA	-15	NA	24938939	24938504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24938582_24938833
transcript_23358.known	chr17	+	1094	5	FSM	ENSMUSG00000044533.16	ENSMUST00000054289.13	1094	5	0	0	0	0	multi-exon	FALSE	canonical	3	8303	junction_1	1140.19655651997	1065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTTTTTTTTGTCTGTCT	6237	False	NA	4	True	AATAAA	-23	NA	24939083	24940903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24939427_24939507_24939706_24939942_24940277_24940596_24940689_24940776
transcript_23359.known	chr17	-	732	4	FSM	ENSMUSG00000040048.15	ENSMUST00000045602.9	732	4	0	0	0	0	multi-exon	FALSE	canonical	3	2001	junction_1	127.206743357243	1374	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTCTGGTGACTAAA	NA	False	NA	NA	False	AATAAA	-22	NA	24943452	24941033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24941195_24941354_24941495_24941628_24941768_24943160
transcript_23365.known	chr17	-	834	3	FSM	ENSMUSG00000040048.15	ENSMUST00000129451.2	834	3	0	0	0	0	multi-exon	FALSE	canonical	3	2248	junction_2	20.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTCTGGTGACTAAA	NA	False	NA	NA	False	AATAAA	-22	NA	24943394	24941033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_24941495_24941628_24941768_24943160
transcript_23366.known	chr17	+	1375	10	FSM	ENSMUSG00000002500.16	ENSMUST00000170239.9	1375	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.96158079150358	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTCTGTCTCTGTGTGTC	NA	False	NA	18	True	AATAAA	-18	NA	24946793	24955117	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24946861_24947290_24947484_24949842_24950012_24951309_24951446_24952282_24952470_24952557_24952719_24952890_24952993_24954390_24954487_24954695_24954816_24954973
transcript_23367.known	chr17	+	886	5	FSM	ENSMUSG00000075705.14	ENSMUST00000115262.9	886	5	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_4	30.3685692781204	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTGTTTGTTGTCTCATG	NA	False	NA	19	True	AATAAA	-19	NA	24955615	24961752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24955737_24958472_24958622_24959053_24959169_24960879_24960912_24961283
transcript_23368.known	chr17	+	1211	4	FSM	ENSMUSG00000075705.14	ENSMUST00000101800.7	1211	4	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_3	11.8602979164381	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCGTTTCCGTGTTTGTTG	NA	False	NA	12	True	AATAAA	-12	NA	24955655	24961745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_24955737_24958472_24958622_24959053_24959169_24960879
transcript_23369.known	chr17	+	1665	13	FSM	ENSMUSG00000024155.9	ENSMUST00000234372.2	1665	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.862006702732383	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATATGAATGATTTCTTTGT	6678	False	NA	NA	False	AATAAA	-21	NA	25023262	25058762	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25023387_25031977_25032056_25035505_25035564_25038845_25038919_25042505_25042702_25046905_25047007_25047925_25047979_25048063_25048160_25051398_25051498_25052868_25053023_25053965_25054150_25055409_25055497_25058400
transcript_2337.known	chr1	-	982	1	FSM	ENSMUSG00000102722.2	ENSMUST00000192012.2	982	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACATATCTACTGGTTCT	NA	False	NA	NA	False	NA	NA	NA	134383211	134382229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_134382200_134383200
transcript_23371.known	chr17	+	1191	9	FSM	ENSMUSG00000024158.18	ENSMUST00000118788.8	1191	9	0	0	0	0	multi-exon	FALSE	canonical	3	330	junction_6	27.6812210713328	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCTTATGGACTCTTT	NA	False	NA	11	True	AAAAAG	-24	NA	25069463	25083424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25069643_25071704_25071881_25072605_25072671_25075611_25075730_25076489_25076599_25079919_25080024_25080286_25080389_25082650_25082731_25083166
transcript_23375.known	chr17	-	1473	1	FSM	ENSMUSG00000045316.6	ENSMUST00000049642.6	1473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACTTTCTTTTCCCAGG	NA	False	NA	3	True	AATAAA	-24	NA	25069338	25067865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25067900_25069300
transcript_23376.known	chr17	+	2625	2	FSM	ENSMUSG00000046070.10	ENSMUST00000050714.8	2625	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTGACCTAGAGTGTG	7775	False	NA	9	True	ATTAAA	-16	NA	25097231	25100984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25097799_25098926
transcript_23377.known	chr17	+	500	2	FSM	ENSMUSG00000046070.10	ENSMUST00000234188.2	500	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGGAGCCTGGAGCCACA	7732	False	NA	NA	False	NA	NA	NA	25097188	25099237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25097378_25098926
transcript_23378.known	chr17	-	899	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234583.2	899	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	259.170257209855	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGAGATCTGCAGGCCC	NA	False	NA	NA	False	NA	NA	NA	25105303	25102022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103458_25104392_25104592_25104692_25104812_25105252
transcript_2338.nnic	chr1	+	3379	12	Fusion	ENSMUSG00000026455.15_ENSMUSG00000101061.2	novel	937	3	NA	NA	-8	0	multi-exon	TRUE	canonical	3	12	junction_1	47.209573199224	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTAAGAGAATTTGTGGG	NA	False	NA	17	True	ATTAAA	-18	NA	134363357	134418611	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr1_+_134363609_134386203_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416672_134416860_134417069
transcript_23381.known	chr17	-	1427	7	FSM	ENSMUSG00000039183.7	ENSMUST00000044252.7	1427	7	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_4	56.4111888034831	518	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAAGGTGTCTGTCTTGT	NA	False	NA	-6	True	AGTAAA	-24	NA	25105322	25101585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105252
transcript_23382.nic	chr17	-	1540	7	NIC	ENSMUSG00000039183.7	novel	1427	7	NA	NA	-129	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_6	244.594051440341	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGTCAAGGTGTCTGT	NA	False	NA	-11	True	AGTAAA	-19	NA	25105452	25101590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105264
transcript_23383.known	chr17	-	1445	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234579.2	1445	7	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_6	253.310580118557	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAAGGTGTCTGTCTTGTT	NA	False	NA	-5	True	AGTAAA	-25	NA	25105313	25101584	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104838_25105252
transcript_23384.known	chr17	-	950	7	FSM	ENSMUSG00000039183.7	ENSMUST00000235055.2	950	7	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_5	246.619646419339	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTAGTTGTTGGCCTGGG	NA	False	NA	NA	False	NA	NA	NA	25105312	25102069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104609_25104692_25104812_25105252
transcript_23386.known	chr17	-	1423	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234489.2	1423	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	262.106636483872	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATGTGGTCAAGGTGTCT	NA	False	NA	-13	True	AGTAAA	-17	NA	25105294	25101592	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103561_25104392_25104592_25104692_25104812_25105252
transcript_23388.known	chr17	-	1440	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234098.2	1440	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	254.994553318737	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAAGGTGTCTGTCTTGT	NA	False	NA	-6	True	AGTAAA	-24	NA	25105321	25101585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25102289_25102779_25102864_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105252
transcript_23389.known	chr17	-	1502	7	FSM	ENSMUSG00000039183.7	ENSMUST00000234968.2	1502	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	246.820953999723	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGTCAAGGTGTCTGT	NA	False	NA	-11	True	AGTAAA	-19	NA	25105307	25101590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25102384_25102779_25102850_25103098_25103210_25103374_25103530_25104392_25104592_25104692_25104812_25105252
transcript_2339.known	chr1	+	3408	12	FSM	ENSMUSG00000026455.15	ENSMUST00000027725.11	3408	12	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	24.9889231659096	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTGTTGGATTTATTGT	NA	False	NA	NA	False	NA	NA	NA	134383268	134418756	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_134383404_134386203_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416672_134416860_134417069
transcript_23394.known	chr17	-	1224	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234352.2	1224	6	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_4	254.082191426318	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGGTCAAGGTGTCTGT	NA	False	NA	-11	True	AGTAAA	-19	NA	25105323	25101590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104692_25104812_25105252
transcript_23395.known	chr17	-	1221	6	FSM	ENSMUSG00000039183.7	ENSMUST00000234261.2	1221	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	327.65310924818	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAAGGTGTCTGTCTTGT	NA	False	NA	-6	True	AGTAAA	-24	NA	25105289	25101585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25102289_25102779_25102850_25103098_25103210_25103374_25103530_25104692_25104838_25105252
transcript_2340.known	chr1	+	3277	12	FSM	ENSMUSG00000026455.15	ENSMUST00000116528.2	3277	12	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	38.3780670833987	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTAAGAGAATTTGTGGG	NA	False	NA	17	True	ATTAAA	-18	NA	134383292	134418611	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_134383404_134386165_134386405_134391564_134391719_134395388_134395607_134400131_134400282_134403525_134403641_134411484_134411592_134413455_134413652_134414747_134414907_134415381_134415481_134416672_134416860_134417069
transcript_23403.known	chr17	-	1521	8	FSM	ENSMUSG00000073436.12	ENSMUST00000121542.2	1521	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	4.68606270481621	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGGCATTTGTGAAGGC	1864	False	NA	NA	False	GATAAA	-16	NA	25114061	25111125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25111658_25111728_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104_25113198_25113544_25113682_25113794
transcript_23409.known	chr17	+	1641	7	FSM	ENSMUSG00000024160.17	ENSMUST00000117890.8	1641	7	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	37.7388688519174	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTGTCTATTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	25105616	25111123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25105735_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
transcript_23412.known	chr17	+	1949	7	FSM	ENSMUSG00000024160.17	ENSMUST00000120943.8	1949	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	56.1921307262463	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTGTCTATTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	25105653	25111123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25106080_25106753_25106892_25109256_25109435_25109541_25109730_25109806_25109910_25109984_25110111_25110333
transcript_23417.known	chr17	-	5226	7	FSM	ENSMUSG00000073436.12	ENSMUST00000119848.8	5226	7	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_1	3.80423740350444	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGCCTGTGTTACAGTG	1896	False	NA	NA	False	AATAAA	-16	NA	25114029	25107459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25111919_25112012_25112129_25112278_25112373_25112524_25112617_25113104_25113198_25113544_25113682_25113794
transcript_23423.known	chr17	+	1950	6	FSM	ENSMUSG00000024160.17	ENSMUST00000134932.2	1950	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	61.4504678582678	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTCTATTGTTTATC	NA	False	NA	NA	False	ATTAAA	-25	NA	25105732	25111126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25106080_25106753_25106892_25109256_25109435_25109541_25109910_25109984_25110111_25110333
transcript_2343.known	chr1	+	2861	2	FSM	ENSMUSG00000042229.10	ENSMUST00000047978.9	2861	2	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_1	0	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGCTGGCGAGATGGCTCA	6638	False	NA	NA	False	ATTAAA	-13	NA	134422385	134436512	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_134422548_134433813
transcript_23431.known	chr17	+	918	3	FSM	ENSMUSG00000038880.14	ENSMUST00000043907.14	918	3	0	0	0	0	multi-exon	FALSE	canonical	3	645	junction_1	12	484	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGTGGTTTCATTACA	NA	False	NA	16	True	AATAAA	-16	NA	25114089	25115263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25114463_25114635_25114679_25114761
transcript_23432.known	chr17	-	1239	2	FSM	ENSMUSG00000024163.18	ENSMUST00000148360.2	1239	2	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATTTAAAAAAAAAATG	NA	False	NA	NA	False	NA	NA	NA	25155919	25146093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25146924_25155510
transcript_23434.known	chr17	-	2672	5	FSM	ENSMUSG00000024165.10	ENSMUST00000024981.9	2672	5	0	0	0	0	multi-exon	TRUE	canonical	3	1697	junction_3	70.6872513258225	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTGCCAATATTTTTCT	4773	False	NA	-1	True	ATTAAA	-17	NA	25179663	25161443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25163653_25164553_25164603_25167611_25167755_25174991_25175141_25179541
transcript_23439.known	chr17	-	1705	3	FSM	ENSMUSG00000024165.10	ENSMUST00000233316.2	1705	3	0	0	0	0	multi-exon	FALSE	canonical	3	1697	junction_1	67.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTTTAATCAGCATTTC	4826	False	NA	NA	False	AAAACA	-26	NA	25179610	25166267	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25167755_25174991_25175141_25179541
transcript_23441.known	chr17	-	3530	21	FSM	ENSMUSG00000024170.16	ENSMUST00000115181.9	3530	21	0	0	0	0	multi-exon	TRUE	canonical	3	51	junction_18	13.9207578816672	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGCTTCTGTGGTTCTTA	NA	False	NA	-1	True	AATAAA	-21	NA	25334941	25318543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25319095_25320272_25320389_25320613_25320679_25320984_25321085_25321610_25321703_25322553_25322746_25323580_25323653_25323781_25323899_25324057_25324150_25324319_25324409_25324703_25324818_25324962_25325043_25325745_25325883_25325962_25326105_25326300_25326370_25329200_25329304_25329680_25329829_25330089_25330159_25331953_25332232_25333910_25334260_25334386
transcript_23442.known	chr17	-	3434	21	FSM	ENSMUSG00000024170.16	ENSMUST00000024987.6	3434	21	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_20	19.5787512369916	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACACAGGCTGCTTCTGTG	NA	False	NA	-8	True	AATAAA	-14	NA	25334879	25318550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25319095_25320272_25320389_25320613_25320679_25320984_25321085_25321610_25321703_25322553_25322746_25323580_25323653_25323781_25323899_25324057_25324150_25324319_25324409_25324703_25324818_25324962_25325043_25325745_25325883_25325962_25326105_25326300_25326370_25329200_25329304_25329680_25329829_25330089_25330159_25331953_25332232_25333910_25334260_25334413
transcript_23446.known	chr17	+	4071	25	FSM	ENSMUSG00000036636.11	ENSMUST00000040729.9	4071	25	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_8	12.081896466293	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTATTTTTATTTTGACT	NA	False	NA	20	True	NA	NA	NA	25352364	25381078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25352589_25363403_25363473_25364542_25364615_25364741_25364808_25365290_25365424_25365743_25365854_25366683_25366765_25368012_25368076_25368184_25368269_25369160_25369255_25369515_25369581_25370089_25370207_25370677_25370733_25371321_25371383_25371989_25372129_25372705_25372800_25374341_25374512_25375774_25375827_25376113_25376242_25376462_25376549_25376845_25376976_25378441_25378502_25378583_25378761_25379103_25379185_25379418
transcript_23449.known	chr17	+	3030	2	FSM	ENSMUSG00000067722.5	ENSMUST00000088307.5	3030	2	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	0	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTATGTCTCTCTGTTA	NA	False	NA	NA	False	AATATA	-16	NA	25403527	25406636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25403615_25403693
transcript_23450.known	chr17	-	1234	11	FSM	ENSMUSG00000035521.14	ENSMUST00000038973.7	1234	11	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	15.4275727189989	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAATGGTTATGTATTATA	NA	False	NA	85	True	ATTAAA	-32	NA	25459090	25453290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25453697_25453781_25453864_25453953_25454086_25454155_25454239_25454318_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
transcript_23459.nic	chr17	-	1234	10	NIC	ENSMUSG00000035521.14	novel	1234	11	NA	NA	-29	-104	intron_retention	FALSE	canonical	3	143	junction_3	16.0585349023464	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCCATACTGATAAAAAATA	NA	False	NA	-19	True	AATAAA	-20	NA	25459127	25453394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_25453697_25453781_25453864_25453953_25454086_25454155_25454239_25454318_25454434_25454507_25454602_25454678_25454885_25458748_25458817_25458887_25458946_25459033
transcript_2346.known	chr1	+	8714	27	FSM	ENSMUSG00000042207.18	ENSMUST00000047714.14	8714	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	194.173731152858	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACGCAATGCTGTTGTAA	6715	False	NA	NA	False	AAGAAA	-24	NA	134487908	134563023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_134488281_134512891_134512970_134515659_134515783_134516514_134516686_134521066_134521202_134523537_134523635_134525320_134525431_134526797_134526957_134528371_134528492_134530187_134530347_134532179_134532362_134533450_134533614_134535425_134535546_134536602_134536798_134540925_134541108_134541624_134541750_134543655_134543807_134543926_134544042_134545429_134545786_134547297_134547437_134548580_134548761_134549672_134549832_134552448_134552935_134555002_134555115_134556335_134556491_134558170_134558492_134558974
transcript_23461.nic	chr17	-	1237	10	NIC	ENSMUSG00000035521.14	novel	1234	11	NA	NA	-29	-104	intron_retention	FALSE	canonical	3	143	junction_5	13.752665286014	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCCATACTGATAAAAAATA	NA	False	NA	-19	True	AATAAA	-20	NA	25459127	25453394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_25453697_25453781_25453864_25453953_25454239_25454318_25454434_25454507_25454602_25454678_25454763_25454829_25454885_25458748_25458817_25458887_25458946_25459033
transcript_2347.nnic	chr1	+	967	7	NNC	ENSMUSG00000026429.10	novel	1116	7	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	3	165	junction_1	233.142779333943	161	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTGTTTATATGAAACG	NA	False	NA	15	True	AATAAA	-17	NA	134890274	134901900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_134890348_134895464_134895637_134896978_134897049_134898987_134899094_134899638_134899738_134899843_134899928_134901537
transcript_23473.nnic	chr17	+	1154	6	NNC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	166.883672059312	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4620	False	NA	28	True	AATAAA	-18	NA	25459160	25461772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_25459339_25459417_25459617_25460037_25460232_25460661_25460836_25461132_25461197_25461427
transcript_23476.known	chr17	+	1192	6	FSM	ENSMUSG00000015126.10	ENSMUST00000063574.7	1192	6	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_2	34.9685573050991	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4603	False	NA	28	True	AATAAA	-18	NA	25459143	25461772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25459339_25459417_25459638_25460037_25460232_25460661_25460836_25461132_25461197_25461427
transcript_23483.nnic	chr17	+	961	5	NIC	ENSMUSG00000015126.10	novel	1192	6	NA	NA	11	0	combination_of_known_splicesites	FALSE	canonical	2	14	junction_1	185.290312752718	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGTTGCTTTGTACGTGG	4614	False	NA	28	True	AATAAA	-18	NA	25459154	25461772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_25459339_25460037_25460232_25460661_25460836_25461132_25461197_25461427
transcript_23486.known	chr17	-	1559	8	FSM	ENSMUSG00000015120.16	ENSMUST00000172618.8	1559	8	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_7	2152.45295286232	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCCTAGCAGCTAGTTT	4216	False	NA	NA	False	GATAAA	-15	NA	25492888	25481152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25491511_25491740_25492294
transcript_2349.known	chr1	+	1046	7	FSM	ENSMUSG00000026429.10	ENSMUST00000223886.2	1046	7	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	296.986531681152	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATAATACTTAATGTTA	NA	False	NA	-6	True	TTTAAA	-9	NA	134890355	134901879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_134890525_134895464_134895641_134896978_134897049_134898987_134899094_134899638_134899738_134899843_134899928_134901537
transcript_23492.known	chr17	-	824	7	FSM	ENSMUSG00000015120.16	ENSMUST00000174031.8	824	7	0	0	0	0	multi-exon	FALSE	canonical	3	4214	junction_6	321.557148886477	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCATTTCCGCCACTG	4596	False	NA	NA	False	NA	NA	NA	25492508	25481279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492294
transcript_23493.nic	chr17	-	1581	7	NIC	ENSMUSG00000015120.16	novel	1138	7	NA	NA	-148	0	combination_of_known_junctions	FALSE	canonical	3	247	junction_6	1729.90957535037	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTGTTGCATTATCAT	4068	False	NA	NA	False	AATAAA	-14	NA	25493036	25480889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25492455
transcript_23494.known	chr17	-	890	7	FSM	ENSMUSG00000015120.16	ENSMUST00000173713.8	890	7	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_6	1745.07048568246	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTAGCAGCTAGTTTCTTT	3820	False	NA	NA	False	GATAAA	-19	NA	25493284	25481148	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493135
transcript_23495.known	chr17	-	1138	7	FSM	ENSMUSG00000015120.16	ENSMUST00000049911.16	1138	7	0	0	0	0	multi-exon	TRUE	canonical	3	77	junction_6	1792.78505404301	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTGTTGCATTATCAT	3820	False	NA	NA	False	AATAAA	-14	NA	25493284	25480889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25481466_25483739_25483820_25484092_25484203_25487514_25487588_25488165_25488250_25488376_25488454_25493146
transcript_23505.known	chr17	+	777	3	FSM	ENSMUSG00000033200.17	ENSMUST00000162021.8	777	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGCTGAGCCTGACAGCCT	NA	False	NA	NA	False	CATAAA	-19	NA	25589526	25593414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25589675_25592698_25592845_25592931
transcript_23506.known	chr17	+	965	4	FSM	ENSMUSG00000091475.5	ENSMUST00000234504.2	965	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTGTCTGTCCTGCA	3256	False	NA	2	True	AATAAA	-5	NA	25789855	25793997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25790076_25792959_25793108_25793220_25793507_25793686
transcript_23508.known	chr17	+	1802	2	FSM	ENSMUSG00000091475.5	ENSMUST00000163493.4	1802	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCCCTTGAATGTGGT	2732	False	NA	22	True	AATAAA	-25	NA	25789331	25794017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25790076_25792959
transcript_23509.known	chr17	+	1858	11	FSM	ENSMUSG00000002279.20	ENSMUST00000116641.9	1858	11	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_2	37.5467708331888	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGCCTCCTGTCTCTAT	NA	False	NA	107	True	NA	NA	NA	25798150	25881800	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25798354_25804516_25804827_25807649_25807661_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
transcript_23510.known	chr17	+	1861	11	FSM	ENSMUSG00000002279.20	ENSMUST00000063344.15	1861	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	48.2406467618335	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGCCTCCTGTCTCTAT	NA	False	NA	107	True	NA	NA	NA	25798147	25881800	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25798354_25804516_25804827_25822736_25822748_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
transcript_23511.nnic	chr17	+	1588	10	NIC	ENSMUSG00000002279.20	novel	1858	11	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	49.3493467504014	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTCTCTACCTATACTGT	NA	False	NA	4	True	AATAAA	-15	NA	25798149	25881697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_25798354_25804516_25804827_25807649_25807661_25831269_25831419_25850708_25850775_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
transcript_23512.known	chr17	+	1424	9	FSM	ENSMUSG00000002279.20	ENSMUST00000137201.8	1424	9	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	39.6917812651435	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCTTCTCTACCTATACTGT	NA	False	NA	4	True	AATAAA	-15	NA	25798160	25881697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25798354_25831269_25831419_25850708_25850775_25864122_25864291_25873393_25873581_25874061_25874216_25874358_25874543_25874974_25875088_25881487
transcript_23513.known	chr17	+	2769	4	FSM	ENSMUSG00000002279.20	ENSMUST00000126164.8	2769	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	51.9807656734681	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCGTGAGTCTCTGCATCT	NA	False	NA	NA	False	NA	NA	NA	25798160	25817530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25798354_25804516_25804827_25807649_25807661_25815275
transcript_23514.known	chr17	-	3214	22	FSM	ENSMUSG00000019214.15	ENSMUST00000048054.14	3214	22	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_21	100.708127696462	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTGGGGAGTGTCAGT	5674	False	NA	NA	False	NA	NA	NA	25946393	25937899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946095_25946220
transcript_23515.known	chr17	-	3208	22	FSM	ENSMUSG00000019214.15	ENSMUST00000170070.3	3208	22	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_21	77.5978060329916	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTGGGGAGTGTCAGT	5683	False	NA	NA	False	NA	NA	NA	25946384	25937899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25938259_25938341_25938400_25938625_25938758_25938838_25938984_25939573_25939705_25939797_25939948_25940032_25940258_25941064_25941213_25941619_25941751_25941817_25941917_25942193_25942288_25942376_25942526_25942616_25942741_25942976_25943075_25943502_25943713_25944469_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946098_25946220
transcript_23521.known	chr17	-	1613	7	FSM	ENSMUSG00000019214.15	ENSMUST00000237158.2	1613	7	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_6	169.684756730434	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGCTTGGCAGGGCCC	5737	False	NA	NA	False	NA	NA	NA	25946330	25943754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946095_25946220
transcript_23522.nic	chr17	-	1688	7	ISM	ENSMUSG00000019214.15	ENSMUST00000170070.3	3208	22	-18	5855	-9	0	5prime_fragment	FALSE	canonical	3	468	junction_6	122.465868260871	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGCTTGGCAGGGCCC	5665	False	NA	NA	False	NA	NA	NA	25946402	25943754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_25944609_25944715_25944769_25944853_25944947_25945348_25945524_25945674_25945823_25945914_25946098_25946220
transcript_23530.known	chr17	+	719	3	FSM	ENSMUSG00000025739.14	ENSMUST00000172002.8	719	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGAAGTCCCTCTCAGGC	NA	False	NA	NA	False	NA	NA	NA	25936144	25938380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25936252_25937640_25937773_25937900
transcript_23531.known	chr17	+	1745	6	FSM	ENSMUSG00000041199.4	ENSMUST00000047273.3	1745	6	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	16.0299719276111	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGACCATGAGCATATCT	NA	False	NA	24	True	AATAAA	-21	NA	25946690	25950438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25946822_25947176_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
transcript_23532.known	chr17	+	1761	6	FSM	ENSMUSG00000041199.4	ENSMUST00000237785.2	1761	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	25.198412648419	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGAGAGTGACCATGAGC	NA	False	NA	18	True	AATAAA	-15	NA	25946690	25950432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25946822_25947154_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
transcript_23533.known	chr17	+	1743	6	FSM	ENSMUSG00000041199.4	ENSMUST00000237183.2	1743	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	28.5096474899287	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGACCATGAGCATATCT	NA	False	NA	24	True	AATAAA	-21	NA	25946643	25950438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25946822_25947225_25947366_25947496_25947621_25947799_25947903_25948041_25948144_25949342
transcript_23534.nic	chr17	+	1924	5	NIC	ENSMUSG00000041199.4	novel	1761	6	NA	NA	-7	0	intron_retention	FALSE	canonical	3	41	junction_1	16.0682139642214	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTGAGAGTGACCATGAGC	NA	False	NA	18	True	AATAAA	-15	NA	25946636	25950432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_25946822_25947176_25947621_25947799_25947903_25948041_25948144_25949342
transcript_23535.known	chr17	+	1531	5	FSM	ENSMUSG00000041199.4	ENSMUST00000235645.2	1531	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	24.712092181764	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAATCTTGAGAGTGACCAT	NA	False	NA	14	True	AATAAA	-11	NA	25946705	25950428	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25946822_25947496_25947621_25947799_25947903_25948041_25948144_25949342
transcript_23537.known	chr17	-	2044	17	FSM	ENSMUSG00000063011.8	ENSMUST00000237359.2	2044	17	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_13	11.5648646230728	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGATGTCCTGTAGTGTTCC	6591	False	NA	-4	True	AATAAA	-20	NA	25973352	25967588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972037_25972351_25972399_25972747_25972792_25973105_25973197_25973316
transcript_23539.known	chr17	-	2054	17	FSM	ENSMUSG00000063011.8	ENSMUST00000236137.2	2054	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_13	16.7330838087305	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGATGTCCTGTAGTGTTC	6592	False	NA	-5	True	AATAAA	-19	NA	25973351	25967589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972049_25972351_25972399_25972747_25972792_25973105_25973197_25973316
transcript_2354.nnic	chr1	-	411	3	NIC	ENSMUSG00000097993.8	novel	6108	37	NA	NA	-295	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_2	6	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTGTGTCTGCTTCTGCA	NA	False	NA	0	True	AATAAA	-19	NA	135037622	135036234	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_135036434_135036656_135036793_135037546
transcript_23541.known	chr17	-	2165	16	FSM	ENSMUSG00000063011.8	ENSMUST00000238120.2	2165	16	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_13	10.6111052937739	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTCCTGTAGTGTTCCTA	6592	False	NA	-2	True	AATAAA	-22	NA	25973351	25967586	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_25967805_25967874_25968062_25968422_25968518_25968799_25968928_25969004_25969148_25969232_25969389_25969648_25969828_25970052_25970153_25970226_25970318_25970543_25970738_25970829_25970960_25971262_25971349_25971915_25972037_25972351_25972399_25972747_25972792_25973105
transcript_23543.nic	chr17	+	2033	11	NIC	ENSMUSG00000002280.12	novel	2062	11	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	81.8291512848569	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATCCACTGTGTGTCTG	6918	False	NA	6	True	AATAAA	-18	NA	25992747	26001765	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_25992862_25994019_25994116_25995922_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_25999927_26000214_26000353_26000661_26000820_26000989
transcript_23545.known	chr17	+	2555	11	FSM	ENSMUSG00000002280.12	ENSMUST00000002350.11	2555	11	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_8	20.6145579627602	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAACTACTCAAATGACTGC	6920	False	NA	NA	False	AATAAA	-19	NA	25992749	26002306	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_25999927_26000214_26000353_26000661_26000820_26000989
transcript_23548.nic	chr17	+	2304	10	NIC	ENSMUSG00000002280.12	novel	2062	11	NA	NA	-2	0	intron_retention	FALSE	canonical	3	241	junction_4	18.6368809979925	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATCCACTGTGTGTCTG	6918	False	NA	6	True	AATAAA	-18	NA	25992747	26001765	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_25992862_25994019_25994116_25995939_25996084_25996298_25996432_25997923_25998059_25998471_25998591_25999280_25999411_25999853_26000353_26000661_26000820_26000989
transcript_23549.known	chr17	-	1405	9	FSM	ENSMUSG00000061046.10	ENSMUST00000077938.10	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	8.07387763097757	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGCAGGTCTGTTTATT	4253	False	NA	-1	True	NA	NA	NA	26004647	26001762	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977_26004169_26004401
transcript_2355.known	chr1	+	1713	7	FSM	ENSMUSG00000026426.11	ENSMUST00000027684.11	1713	7	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_3	43.3720980457354	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGTGTGTATGGTGCTGGT	NA	False	NA	15	True	AATAAA	-19	NA	135074561	135084007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_135074839_135080208_135080290_135080530_135080605_135081913_135082008_135082145_135082214_135082450_135082522_135082959
transcript_23550.nic	chr17	-	1648	8	ISM	ENSMUSG00000061046.10	ENSMUST00000140738.8	1194	9	-53	2947	-11	0	5prime_fragment	FALSE	canonical	3	40	junction_3	8.60232526704263	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTGCAGGTCTGTTTAT	4333	False	NA	-2	True	NA	NA	NA	26004567	26001763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26003977_26004169_26004401
transcript_23551.known	chr17	-	1128	8	FSM	ENSMUSG00000061046.10	ENSMUST00000133071.8	1128	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_7	17.8953876169024	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGCAGGTCTGTTTATT	4344	False	NA	-1	True	NA	NA	NA	26004556	26001762	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26004396
transcript_23552.known	chr17	-	1074	8	FSM	ENSMUSG00000061046.10	ENSMUST00000138759.8	1074	8	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_7	17.2496672549984	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGTGGTACCAGACACAC	4359	False	NA	-35	True	AATAAA	-14	NA	26004541	26001796	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26002153_26002476_26002557_26002758_26002861_26003048_26003153_26003233_26003343_26003428_26003547_26003634_26003700_26004401
transcript_23559.known	chr17	-	848	5	FSM	ENSMUSG00000061046.10	ENSMUST00000148986.8	848	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	22.2078251974389	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGAGGAGCTCATGTACAAC	4359	False	NA	NA	False	NA	NA	NA	26004541	26002513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26002557_26002758_26002861_26003048_26003547_26003634_26003700_26004401
transcript_2356.known	chr1	+	1495	7	FSM	ENSMUSG00000026426.11	ENSMUST00000125774.2	1495	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	183.490235889179	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGTGTGTATGGTGCTGGT	NA	False	NA	15	True	AATAAA	-19	NA	135075406	135084007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_135075466_135080208_135080290_135080530_135080605_135081913_135082008_135082145_135082214_135082450_135082522_135082959
transcript_23561.known	chr17	-	641	5	FSM	ENSMUSG00000057411.10	ENSMUST00000236161.2	641	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	93.5050132345854	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATCCTGACTTTTGTTT	8688	False	NA	-12	True	AATAAA	-12	NA	26011051	26009484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26010975
transcript_23562.known	chr17	-	1321	5	FSM	ENSMUSG00000057411.10	ENSMUST00000072735.9	1321	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	48.7185796180472	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTTGTTTGTTCCAGGAA	9977	False	NA	-2	True	AATAAA	-22	NA	26011772	26009474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011026
transcript_23563.known	chr17	-	627	5	FSM	ENSMUSG00000057411.10	ENSMUST00000236683.2	627	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_4	82.996987897152	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8378	False	NA	-7	True	AATAAA	-17	NA	26011361	26009479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011304
transcript_23564.nnic	chr17	-	714	5	NNC	ENSMUSG00000057411.10	novel	627	5	NA	NA	30	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	90.9763018593304	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	9995	False	NA	-7	True	AATAAA	-17	NA	26011845	26009479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545_26010651_26011701
transcript_23566.nnic	chr17	-	1092	5	NNC	ENSMUSG00000002274.14	novel	987	5	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	40.1434926233381	13	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTAGTCATGGTCTT	5848	False	NA	-2	True	NA	NA	NA	26016102	26013798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_26014266_26014347_26014408_26015214_26015616_26015838_26015948_26016047
transcript_2357.known	chr1	-	2288	11	FSM	ENSMUSG00000041926.16	ENSMUST00000077340.14	2288	11	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_8	16.9602476397015	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGTTGGAGTTATAGAATG	NA	False	NA	-14	True	AATAAA	-22	NA	135211822	135190449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_135190868_135191790_135191934_135192920_135193146_135194607_135194717_135194907_135195021_135195820_135195935_135199266_135199503_135200099_135200217_135205126_135205276_135206504_135206646_135211299
transcript_23570.known	chr17	-	1886	3	FSM	ENSMUSG00000057411.10	ENSMUST00000236842.2	1886	3	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_2	3.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGTTTGTTCCAGGAAT	9984	False	NA	-1	True	AATAAA	-23	NA	26011875	26009473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26009753_26009906_26009958_26010319
transcript_23571.known	chr17	-	1267	4	FSM	ENSMUSG00000057411.10	ENSMUST00000235327.2	1267	4	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_3	24.4449494897321	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGACTTTTGTTTGTTCC	8392	False	NA	-7	True	AATAAA	-17	NA	26011347	26009479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26009753_26009906_26009958_26010319_26010461_26010545
transcript_23572.known	chr17	+	3099	9	FSM	ENSMUSG00000025737.6	ENSMUST00000026833.6	3099	9	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	16.5529453572468	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTTGTCACTTTCATTG	NA	False	NA	18	True	AATAAA	-20	NA	26042600	26047704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26043661_26044627_26044806_26044925_26045599_26046008_26046128_26046208_26046331_26046401_26046507_26046626_26046968_26047127_26047313_26047388
transcript_23573.known	chr17	+	3139	8	FSM	ENSMUSG00000025737.6	ENSMUST00000160349.2	3139	8	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	15.8449116277055	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTGGCCACTTGTCA	NA	False	NA	9	True	AATAAA	-11	NA	26042622	26047695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26043661_26044627_26044806_26044925_26045599_26046008_26046128_26046208_26046507_26046626_26046968_26047127_26047313_26047388
transcript_23575.known	chr17	+	2091	9	FSM	ENSMUSG00000025736.16	ENSMUST00000026832.14	2091	9	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	9.19238815542512	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCCTGGTGGATGCGCC	NA	False	NA	17	True	NA	NA	NA	26048016	26050816	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26048138_26048213_26048313_26048457_26048507_26048579_26048677_26048758_26048828_26048915_26049036_26049112_26049181_26049273_26049409_26049483
transcript_23586.known	chr17	-	1803	7	FSM	ENSMUSG00000039615.10	ENSMUST00000044911.10	1803	7	0	0	0	0	multi-exon	FALSE	canonical	3	1378	junction_3	85.5336191213724	757	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAGAAAAAAAAAATTT	6345	False	NA	NA	False	AATACA	-10	NA	26052335	26049478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051219_26051665
transcript_23587.known	chr17	-	1341	7	FSM	ENSMUSG00000039615.10	ENSMUST00000237186.2	1341	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	575.587139845528	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGCTTGCCAGTTGCCTG	6302	False	NA	1	True	AATAAA	-35	NA	26052378	26049589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26049985_26050075_26050193_26050282_26050340_26050517_26050606_26050769_26050936_26051019_26051219_26052059
transcript_23590.known	chr17	-	1408	6	FSM	ENSMUSG00000039615.10	ENSMUST00000236565.2	1408	6	0	0	0	0	multi-exon	FALSE	canonical	3	1486	junction_1	49.0167318372002	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCATGTGCTGGTGCA	6787	False	NA	-19	True	AATAAA	-15	NA	26051893	26049609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26049985_26050075_26050193_26050282_26050606_26050769_26050936_26051019_26051219_26051665
transcript_23593.known	chr17	-	1498	5	FSM	ENSMUSG00000039615.10	ENSMUST00000235484.2	1498	5	0	0	0	0	multi-exon	FALSE	canonical	3	1486	junction_1	49.4115371143218	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGCATGTGCTGGTGCA	6787	False	NA	-19	True	AATAAA	-15	NA	26051893	26049609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26049985_26050075_26050606_26050769_26050936_26051019_26051219_26051665
transcript_23597.known	chr17	-	3189	19	FSM	ENSMUSG00000025733.18	ENSMUST00000043897.16	3189	19	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_18	11.3871272350258	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGACTGCTGTTTTTGTGT	5687	False	NA	0	True	NA	NA	NA	26063825	26057430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26058469_26058662_26058866_26058958_26059082_26059228_26059310_26059411_26059543_26059624_26059726_26059809_26059953_26060025_26060111_26060335_26060457_26060532_26060642_26060730_26060830_26060963_26061066_26061153_26061263_26061339_26061393_26062080_26062135_26062914_26062959_26063062_26063145_26063228_26063288_26063373
transcript_2360.known	chr1	-	2095	9	FSM	ENSMUSG00000003051.14	ENSMUST00000003135.14	2095	9	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_7	111.074791807142	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGAGCTCTCTGTGTAC	NA	False	NA	-6	True	AATAAA	-27	NA	135186306	135181312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135185025_135185352_135185521_135186086
transcript_23603.nic	chr17	-	1455	3	NIC	ENSMUSG00000025733.18	novel	482	4	NA	NA	-13	-529	intron_retention	FALSE	canonical	3	133	junction_2	11	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAACCAAAAAAAGAAAAA	5983	False	NA	NA	False	NA	NA	NA	26063529	26061884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_26062959_26063062_26063288_26063373
transcript_23604.known	chr17	-	945	6	FSM	ENSMUSG00000025732.7	ENSMUST00000237080.2	945	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	129.343882731268	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCGGGTGTTGGTGATTG	7792	False	NA	-4	True	AATAAA	-15	NA	26087708	26082671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26083014_26083224_26083327_26083567_26083696_26084508_26084642_26087387_26087518_26087598
transcript_23606.known	chr17	-	738	5	FSM	ENSMUSG00000025732.7	ENSMUST00000235806.2	738	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	120.520485810504	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCGGGTGTTGGTGATTG	7792	False	NA	-4	True	AATAAA	-15	NA	26087708	26082671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26082940_26083224_26083327_26083567_26083696_26087387_26087518_26087598
transcript_23607.known	chr17	-	547	5	FSM	ENSMUSG00000025732.7	ENSMUST00000236479.2	547	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	125.22879061941	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGGCCACACCTGAAGTGCC	7804	False	NA	NA	False	NA	NA	NA	26087696	26082853	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26082943_26083224_26083327_26083567_26083696_26087387_26087518_26087598
transcript_23608.known	chr17	-	842	5	FSM	ENSMUSG00000025732.7	ENSMUST00000026828.7	842	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	22.6770809408971	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCGGGTGTTGGTGATTG	7762	False	NA	-4	True	AATAAA	-15	NA	26087738	26082671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26083014_26083224_26083327_26083567_26083696_26087387_26087518_26087598
transcript_2361.known	chr1	-	1901	9	FSM	ENSMUSG00000003051.14	ENSMUST00000185752.2	1901	9	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_7	94.095363860288	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGCCTGAGCTCTCTGT	NA	False	NA	-10	True	AATAAA	-23	NA	135186176	135181316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_135182119_135182662_135182859_135183712_135183830_135183971_135184062_135184208_135184329_135184516_135184613_135184742_135184965_135185352_135185521_135186086
transcript_23610.known	chr17	+	1243	6	FSM	ENSMUSG00000025731.17	ENSMUST00000026827.16	1243	6	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_5	67.7542618585724	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGGGAATACCTGGGAG	6768	False	NA	39	True	AATAAA	-40	NA	26094047	26096143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634_26095714_26095923
transcript_23611.known	chr17	+	1026	5	FSM	ENSMUSG00000025731.17	ENSMUST00000169308.8	1026	5	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_1	48.8287824955732	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGGGAATACCTGGGAG	7195	False	NA	39	True	AATAAA	-40	NA	26094474	26096143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26094701_26094933_26095097_26095193_26095254_26095468_26095537_26095634
transcript_23612.known	chr17	+	891	4	FSM	ENSMUSG00000025731.17	ENSMUST00000110456.3	891	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	203.922098415601	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATTGCTTGCTGGGAAT	7158	False	NA	30	True	AATAAA	-31	NA	26094437	26096134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26094701_26095193_26095254_26095468_26095537_26095634
transcript_23615.known	chr17	-	3173	11	FSM	ENSMUSG00000025728.17	ENSMUST00000026823.16	3173	11	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_4	23.9309423132479	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGGGTGTCCTGCTCGTC	NA	False	NA	1	True	AATAAA	-24	NA	26161022	26145394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26160788
transcript_2362.known	chr1	-	7280	6	FSM	ENSMUSG00000062580.10	ENSMUST00000081104.10	7280	6	0	0	0	0	multi-exon	FALSE	canonical	3	2331	junction_5	176.235070289656	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTTTGGCCATGATGTT	NA	False	NA	NA	False	NA	NA	NA	135241516	135222950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_135229742_135232167_135232279_135233826_135233956_135236872_135236937_135237508_135237609_135241431
transcript_23621.known	chr17	-	954	7	FSM	ENSMUSG00000025730.15	ENSMUST00000167018.8	954	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_6	27.4104602904317	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATCTCCTAGCGGGACACA	NA	False	NA	NA	False	NA	NA	NA	26138701	26102612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26102883_26103553_26103777_26104048_26104127_26109611_26109673_26110259_26110321_26138338_26138524_26138625
transcript_23623.known	chr17	+	372	1	FSM	ENSMUSG00000057580.5	ENSMUST00000170379.2	372	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTCCCCACCACCACCAC	4032	False	NA	NA	False	AAAAAG	-39	NA	26120829	26121201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26120800_26121200
transcript_23624.known	chr17	-	2987	11	FSM	ENSMUSG00000025728.17	ENSMUST00000208043.2	2987	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	84.5955081549842	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACCAGCTTGGGTGTCCTG	NA	False	NA	-5	True	AATAAA	-18	NA	26161797	26145400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26146731_26147764_26147827_26149494_26149610_26149931_26150013_26150435_26150548_26150647_26150802_26151078_26151206_26153731_26153853_26153976_26154109_26155737_26156437_26161743
transcript_23627.known	chr17	-	2224	9	FSM	ENSMUSG00000036775.14	ENSMUST00000040907.8	2224	9	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_7	27.3849867628232	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATAGTGCTTGTGTTTCCT	NA	False	NA	-4	True	NA	NA	NA	26309311	26300184	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26308937
transcript_23628.nic	chr17	-	2041	9	NIC	ENSMUSG00000036775.14	novel	2224	9	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_8	57.9427249531811	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACTGATTCTACCATGGA	NA	False	NA	-23	True	NA	NA	NA	26309280	26300203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_26301236_26301849_26302068_26302549_26302655_26302818_26302913_26302984_26303110_26306297_26306434_26306995_26307048_26307902_26307972_26309070
transcript_23631.known	chr17	-	926	6	FSM	ENSMUSG00000024177.10	ENSMUST00000236547.2	926	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	147.011019995101	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGGTCTACTTACTAGTTC	NA	False	NA	-2	True	ATTAAA	-20	NA	26314447	26310709	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26311127_26311480_26311532_26312590_26312704_26312832_26312935_26313110_26313245_26314338
transcript_23632.known	chr17	-	1006	5	FSM	ENSMUSG00000024177.10	ENSMUST00000025007.7	1006	5	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	23.847169643377	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACTTACTAGTTCTG	NA	False	NA	0	True	ATTAAA	-22	NA	26314576	26310707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26311127_26312590_26312704_26312832_26312935_26313110_26313245_26314338
transcript_23637.known	chr17	-	1176	3	FSM	ENSMUSG00000024177.10	ENSMUST00000236112.2	1176	3	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	7.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAAATGGTCTACTTACTA	NA	False	NA	-6	True	ATTAAA	-16	NA	26314447	26310713	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26311127_26312590_26313245_26314338
transcript_23639.known	chr17	-	995	2	FSM	ENSMUSG00000024177.10	ENSMUST00000150280.3	995	2	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTTGAGAAGTGGGAATCT	NA	False	NA	NA	False	NA	NA	NA	26314459	26312370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26313245_26314338
transcript_23640.known	chr17	-	795	3	FSM	ENSMUSG00000024177.10	ENSMUST00000236967.2	795	3	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	27	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTACTTACTAGTTCTG	NA	False	NA	0	True	ATTAAA	-22	NA	26313142	26310707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26311127_26312590_26312935_26313110
transcript_23641.known	chr17	-	231	1	FSM	ENSMUSG00000049124.5	ENSMUST00000053575.5	231	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCTCAGCAAGCAGTG	NA	False	NA	NA	False	NA	NA	NA	26318195	26317964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26318000_26318200
transcript_23644.known	chr17	+	1068	5	FSM	ENSMUSG00000024181.10	ENSMUST00000025014.10	1068	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	613.108677152754	890	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342473	26345587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344451_26344539_26345244
transcript_23645.known	chr17	+	1002	5	FSM	ENSMUSG00000024181.10	ENSMUST00000127647.3	1002	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	671.536670629386	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342517	26345587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344473_26344539_26345244
transcript_23647.known	chr17	+	1134	4	FSM	ENSMUSG00000024181.10	ENSMUST00000236040.2	1134	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	672.139039848817	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342493	26345587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26342824_26343529_26343683_26344230_26344539_26345244
transcript_23650.known	chr17	+	1047	5	FSM	ENSMUSG00000024181.10	ENSMUST00000236166.2	1047	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	700.577752644201	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGAGTCCTGTGAGTTC	NA	False	NA	21	True	AGTAAA	-21	NA	26342473	26345587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26342824_26343529_26343683_26344230_26344366_26344451_26344539_26345265
transcript_23652.known	chr17	-	1032	6	FSM	ENSMUSG00000073433.12	ENSMUST00000025019.9	1032	6	0	0	0	0	multi-exon	TRUE	canonical	3	81	junction_2	6.72309452558864	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTGTGCTGCTTCTTT	NA	False	NA	-4	True	ATTAAA	-17	NA	26420324	26418156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26418504_26418586_26418651_26418725_26418803_26418988_26419073_26419164_26419345_26420044
transcript_23653.known	chr17	-	736	6	FSM	ENSMUSG00000073433.12	ENSMUST00000176847.8	736	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	35.4434761274907	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCACGTGGCCTCTACGTGG	NA	False	NA	NA	False	NA	NA	NA	26426760	26418409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26418504_26418586_26418651_26418725_26418803_26418988_26419073_26419164_26419345_26426523
transcript_23657.known	chr17	-	2833	13	FSM	ENSMUSG00000024187.16	ENSMUST00000234687.2	2833	13	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_12	40.5798253103956	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCAGCGTGAGCCTGCAGT	1928	False	NA	-17	True	AATAAA	-31	NA	26463188	26431683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444885_26444998_26462963
transcript_23658.known	chr17	-	3714	13	FSM	ENSMUSG00000024187.16	ENSMUST00000114988.8	3714	13	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_12	26.8089951736767	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACTGTGGGAATCACTT	1919	False	NA	NA	False	NA	NA	NA	26463197	26430795	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444885_26444998_26462979
transcript_23659.nic	chr17	-	2828	13	NIC	ENSMUSG00000024187.16	novel	2833	13	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_11	63.7958440826847	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCAGCGTGAGCCTGCAGT	1917	False	NA	-17	True	AATAAA	-31	NA	26463199	26431683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444901_26444998_26462963
transcript_23660.known	chr17	-	2828	13	FSM	ENSMUSG00000024187.16	ENSMUST00000234554.2	2828	13	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_11	57.1286924408392	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGGATGTCTTTCTG	1920	False	NA	2	True	NA	NA	NA	26463196	26431664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26444901_26444998_26462979
transcript_23664.known	chr17	-	2629	12	FSM	ENSMUSG00000024187.16	ENSMUST00000118487.8	2629	12	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_11	57.0232662389834	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTCCAGCGTGAGCCTGC	2001	False	NA	-20	True	AATAAA	-28	NA	26463115	26431686	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26432692_26432777_26432881_26433301_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26462979
transcript_23666.known	chr17	-	2696	12	FSM	ENSMUSG00000024187.16	ENSMUST00000141240.3	2696	12	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	77.1171696267418	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCAGCGTGAGCCTGCAGT	1919	False	NA	-17	True	AATAAA	-31	NA	26463197	26431683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_26432692_26432777_26432881_26433319_26433458_26433625_26433702_26434158_26434300_26435162_26435293_26435532_26435666_26436267_26436405_26437097_26437293_26437608_26437726_26439254_26439555_26462979
transcript_23672.known	chr17	+	1672	10	FSM	ENSMUSG00000024188.17	ENSMUST00000148894.2	1672	10	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	196.74976273379	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTTTACATTAGTGTATT	NA	False	NA	17	True	ATTAAA	-29	NA	26471972	26499697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26472066_26472947_26473019_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
transcript_23676.known	chr17	+	4934	10	FSM	ENSMUSG00000024188.17	ENSMUST00000114976.9	4934	10	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_9	132.110877487879	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTGTCAGGTGTTTTGT	NA	False	NA	17	True	NA	NA	NA	26471924	26504478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934_26499103_26500598
transcript_23679.known	chr17	+	2670	9	FSM	ENSMUSG00000024188.17	ENSMUST00000133032.8	2670	9	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	146.829354609356	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATATGTTTACATTAGTGT	NA	False	NA	14	True	ATTAAA	-26	NA	26471957	26499694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26472066_26472947_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
transcript_23681.known	chr17	+	1700	9	FSM	ENSMUSG00000024188.17	ENSMUST00000025023.15	1700	9	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_1	74.6521098161331	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATATGTTTACATTAGTG	NA	False	NA	13	True	ATTAAA	-25	NA	26471869	26499693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26472066_26474004_26474100_26476899_26476999_26485256_26485368_26486188_26486333_26494647_26494825_26496519_26496609_26498306_26498337_26498934
transcript_23692.nic	chr17	+	1276	11	NIC	ENSMUSG00000001576.16	novel	2754	10	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_10	172.153884649752	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCACGTGTCTCTTTCCCTG	NA	False	NA	14	True	GATAAA	-16	NA	26780488	26874326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26873800_26873928_26874040
transcript_23694.known	chr17	+	2754	10	FSM	ENSMUSG00000001576.16	ENSMUST00000167662.8	2754	10	0	0	0	0	multi-exon	FALSE	canonical	3	380	junction_9	34.0783411176855	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTGCTGTGACTCTGC	NA	False	NA	11	True	ATTAAA	-15	NA	26780462	26875905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26780607_26827566_26827629_26833329_26833403_26843563_26843659_26848528_26848654_26853390_26853496_26854959_26855021_26857716_26857818_26860555_26860679_26874040
transcript_2370.known	chr1	-	1763	5	FSM	ENSMUSG00000041889.8	ENSMUST00000041240.4	1763	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	2.8613807855649	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGAGTCCGTCCTTCCTT	NA	False	NA	3	True	NA	NA	NA	135302975	135298794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_135299735_135299934_135300103_135300889_135301024_135302115_135302288_135302626
transcript_23705.nnic	chr17	+	806	4	NNC	ENSMUSG00000015575.16	novel	823	4	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	381	junction_3	528.401993435553	217	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCTCCAGTGTTTAAAA	NA	False	NA	37	True	AATAAA	-25	NA	26895344	26918621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_26895553_26901651_26901700_26914328_26914443_26918185
transcript_23706.known	chr17	+	823	4	FSM	ENSMUSG00000015575.16	ENSMUST00000015719.16	823	4	0	0	0	0	multi-exon	FALSE	canonical	3	1134	junction_3	173.829418300432	728	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGCTCCAGTGTTTAAAA	NA	False	NA	37	True	AATAAA	-25	NA	26895343	26918621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26895553_26901651_26901700_26914328_26914459_26918185
transcript_23708.known	chr17	+	7462	9	FSM	ENSMUSG00000048249.15	ENSMUST00000062519.14	7462	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	7.89679523604354	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGTTTGCCTCATATTTT	1280	False	NA	NA	False	AATAAA	-24	NA	26934623	26995609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_26934749_26955762_26955958_26958516_26958643_26961015_26962106_26976778_26976974_26978733_26978924_26981211_26981286_26982299_26982423_26990265
transcript_23717.known	chr17	+	1098	6	FSM	ENSMUSG00000024191.16	ENSMUST00000015725.16	1098	6	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	9.09945053286186	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAGTGGTAAATGCTTAAC	1994	False	NA	15	True	AATAAA	-15	NA	27000039	27011495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_27000151_27002418_27002512_27005670_27005763_27008668_27008771_27009899_27010019_27010914
transcript_23718.known	chr17	+	818	5	FSM	ENSMUSG00000024191.16	ENSMUST00000137989.2	818	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	37.8615900352851	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTCCAGAGGCCTGAGC	2086	False	NA	-81	True	NA	NA	NA	27000131	27011399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_27000151_27002418_27002512_27008668_27008771_27009899_27010019_27010914
transcript_2372.known	chr1	-	1404	3	FSM	ENSMUSG00000041889.8	ENSMUST00000159918.2	1404	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTATGAGTCCGTCCTTC	NA	False	NA	0	True	NA	NA	NA	135301188	135298797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_135299735_135299934_135300103_135300889
transcript_23723.nic	chr17	-	712	6	ISM	ENSMUSG00000024194.17	ENSMUST00000025027.10	741	7	111	0	6	0	intron_retention	FALSE	canonical	3	511	junction_5	169.834507683215	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9363	False	NA	-17	True	AATAAA	-18	NA	27158432	27156945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158290
transcript_23724.known	chr17	-	662	6	FSM	ENSMUSG00000024194.17	ENSMUST00000114935.9	662	6	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_5	278.895392575783	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9278	False	NA	-18	True	AATAAA	-17	NA	27158517	27156946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158424
transcript_23726.known	chr17	-	622	6	FSM	ENSMUSG00000024194.17	ENSMUST00000236623.2	622	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	366.074855733086	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGGTCACAGAATCGGT	9430	False	NA	NA	False	NA	NA	NA	27158365	27157071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158170_27158290
transcript_23727.known	chr17	-	719	6	FSM	ENSMUSG00000024194.17	ENSMUST00000236888.2	719	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	368.320838400436	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9387	False	NA	-18	True	AATAAA	-17	NA	27158408	27156946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27157151_27157391_27157442_27157545_27157624_27157700_27157761_27157857_27158067_27158290
transcript_23730.known	chr17	-	785	5	FSM	ENSMUSG00000024194.17	ENSMUST00000237609.2	785	5	0	0	0	0	multi-exon	FALSE	canonical	3	511	junction_4	189.078026221981	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTTTTCTCTGTGACAT	9398	False	NA	-18	True	AATAAA	-17	NA	27158397	27156946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857_27158067_27158290
transcript_23731.nic	chr17	-	940	5	NIC	ENSMUSG00000024194.17	novel	741	7	NA	NA	-142	0	intron_retention	FALSE	canonical	3	227	junction_4	311.485954739536	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9110	False	NA	-17	True	AATAAA	-18	NA	27158685	27156945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_27157151_27157391_27157442_27157545_27157761_27157857_27158067_27158424
transcript_2374.known	chr1	-	6247	24	FSM	ENSMUSG00000041879.14	ENSMUST00000041023.14	6247	24	0	0	0	0	multi-exon	TRUE	canonical	3	518	junction_15	35.6964730086209	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCCTGTCAGTTTCAGT	NA	False	NA	-4	True	AATAAA	-21	NA	135358237	135310049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_135313216_135313664_135313742_135313956_135314059_135314421_135314545_135315111_135315246_135316248_135316416_135317050_135317327_135318275_135318405_135319233_135319383_135321873_135322101_135327781_135327942_135329970_135330111_135331025_135331133_135331961_135332061_135333558_135333711_135334254_135334314_135334496_135334598_135334689_135334810_135335725_135335813_135337130_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135358005
transcript_23741.known	chr17	+	819	3	FSM	ENSMUSG00000024301.11	ENSMUST00000236476.2	819	3	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	42	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	27136064	27140482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_27136260_27139770_27139906_27139993
transcript_23743.known	chr17	-	937	6	FSM	ENSMUSG00000024194.17	ENSMUST00000236326.2	937	6	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_5	250.477144665936	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9276	False	NA	-21	True	AATAAA	-14	NA	27158519	27156949	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158343_27158424
transcript_23744.known	chr17	-	741	7	FSM	ENSMUSG00000024194.17	ENSMUST00000025027.10	741	7	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_6	250.570959122472	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9252	False	NA	-17	True	AATAAA	-18	NA	27158543	27156945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27157151_27157391_27157442_27157545_27157592_27157700_27157761_27157857_27158067_27158290_27158343_27158424
transcript_23745.known	chr17	-	1476	2	FSM	ENSMUSG00000024194.17	ENSMUST00000235341.2	1476	2	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGCCTTTTCTCTGTGA	9288	False	NA	-21	True	AATAAA	-14	NA	27158507	27156949	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27158343_27158424
transcript_23746.known	chr17	-	1130	4	FSM	ENSMUSG00000024194.17	ENSMUST00000235442.2	1130	4	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_3	309.969174094601	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTTCTCTGTGACATG	9300	False	NA	-17	True	AATAAA	-18	NA	27158495	27156945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27157151_27157391_27157761_27157857_27158343_27158424
transcript_23749.known	chr17	+	1138	7	FSM	ENSMUSG00000048731.16	ENSMUST00000122106.9	1138	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	8.62972897733308	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGGGCTGTCTGTCCCC	NA	False	NA	19	True	AATAAA	-20	NA	27236966	27255352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_27237145_27244310_27244434_27249649_27249775_27251536_27251632_27251734_27251946_27253738_27253879_27255086
transcript_23751.known	chr17	-	2387	6	FSM	ENSMUSG00000057789.15	ENSMUST00000078691.12	2387	6	0	0	0	0	multi-exon	TRUE	canonical	3	126	junction_3	5.45527267879434	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGCCTGGCATCTTTACA	NA	False	NA	0	True	AATAAA	-20	NA	27247983	27238783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241852_27244766_27244868_27247384
transcript_23753.known	chr17	-	902	5	FSM	ENSMUSG00000057789.15	ENSMUST00000143158.3	902	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	55.9793488708113	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGCCACTAATTCCCAGAAAA	NA	False	NA	NA	False	NA	NA	NA	27247668	27239639	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27239877_27241412_27241557_27241715_27241852_27244766_27244868_27247384
transcript_23755.known	chr17	+	2796	2	FSM	ENSMUSG00000079605.6	ENSMUST00000120016.3	2796	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTAGACTGGCTTGAGTGA	NA	False	NA	16	True	AATAAA	-24	NA	27192140	27195177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_27192289_27192529
transcript_23757.known	chr17	+	451	2	FSM	ENSMUSG00000048731.16	ENSMUST00000142141.3	451	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCGTAGCGCCGGTTAATA	NA	False	NA	22	True	AGTAAA	-14	NA	27236960	27241491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_27237145_27241224
transcript_23758.known	chr17	-	1958	6	FSM	ENSMUSG00000057789.15	ENSMUST00000237411.2	1958	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	53.687987483235	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTCGCCTGGCATCTTTA	NA	False	NA	-2	True	AATAAA	-18	NA	27247561	27238785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27240010_27240140_27240322_27241412_27241557_27241715_27241847_27244766_27244868_27247384
transcript_23759.known	chr17	+	8990	58	FSM	ENSMUSG00000042644.10	ENSMUST00000049308.9	8990	58	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_18	48.4846455023872	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCACAGGGTCATACTTCTG	NA	False	NA	16	True	AATAAA	-20	NA	27276277	27341197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_27276649_27292071_27292143_27302503_27302626_27304062_27304150_27305812_27305972_27306119_27306219_27306564_27306649_27307925_27308073_27308235_27308332_27308589_27308641_27308803_27308947_27310284_27310385_27310466_27310628_27310787_27310930_27312148_27312311_27313768_27313942_27314437_27314558_27314860_27315044_27316935_27317188_27317287_27317433_27317947_27318090_27318573_27318774_27320078_27320209_27320556_27320615_27321740_27321907_27322806_27322972_27323047_27323123_27323498_27323625_27324467_27324591_27325179_27325381_27326203_27326456_27326583_27326710_27326790_27326917_27329453_27329575_27329804_27329996_27330171_27330321_27330437_27330547_27330638_27330730_27330830_27331001_27332464_27332640_27332717_27332900_27333053_27333255_27333368_27333480_27333820_27333917_27334001_27334104_27334188_27334276_27334646_27334758_27334859_27335053_27335145_27335272_27335582_27335756_27336139_27336305_27336706_27336900_27337330_27337436_27337518_27337647_27338188_27338355_27338841_27339003_27339904_27340067_27340433
transcript_23760.known	chr17	-	500	4	FSM	ENSMUSG00000024208.17	ENSMUST00000025045.15	500	4	0	0	0	0	multi-exon	TRUE	canonical	3	2713	junction_1	153.559977424675	1147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTGGAACTCATTCAT	1947	False	NA	2	True	AATAAA	-24	NA	27352890	27341636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27341815_27344120_27344191_27344857_27344933_27352713
transcript_23767.nnic	chr17	+	226	3	Antisense	novelGene_ENSMUSG00000117916.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_1	6.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGTGTTCCATCTTCC	NA	False	NA	5	True	AATAAA	-17	NA	27457784	27458368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr17_+_27457828_27457913_27457979_27458250
transcript_2377.nnic	chr1	-	980	7	NNC	ENSMUSG00000041879.14	novel	6247	24	NA	NA	-1	-931	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	280.594854233327	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAATCTTTTTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	135358238	135322833	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_135322947_135335029_135335081_135336987_135337220_135346974_135347177_135347728_135347816_135348029_135348092_135358005
transcript_23770.nnic	chr17	-	746	3	NNC	ENSMUSG00000117916.2	novel	2149	2	NA	NA	-6	4	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_1	34.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCCGACTTGGGTTTTTT	6243	False	NA	-5	True	NA	NA	NA	27461639	27454044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_27454490_27455902_27456112_27461547
transcript_23773.known	chr17	-	2149	2	FSM	ENSMUSG00000117916.2	ENSMUST00000235429.2	2149	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATACTCCGACTTGGGTT	6249	False	NA	-9	True	NA	NA	NA	27461633	27454048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27456112_27461547
transcript_23776.known	chr17	+	346	1	FSM	ENSMUSG00000082741.3	ENSMUST00000119573.3	346	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAAGTTTTCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	27749040	27749386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_27749000_27749400
transcript_23782.known	chr17	+	916	5	FSM	ENSMUSG00000046711.17	ENSMUST00000117254.9	916	5	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_4	2003.13017550033	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGTAGGATGATGTTGGCT	NA	False	NA	NA	False	NA	NA	NA	27775636	27782008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_27775686_27778506_27778645_27779901_27779986_27780434_27780486_27781414
transcript_23783.known	chr17	+	706	5	FSM	ENSMUSG00000046711.17	ENSMUST00000231796.2	706	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2239.01021659125	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCCGTAGAGGGTCCTGG	NA	False	NA	NA	False	NA	NA	NA	27775668	27781782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_27775686_27778506_27778678_27779889_27779986_27780434_27780486_27781411
transcript_23785.known	chr17	+	1595	5	FSM	ENSMUSG00000046711.17	ENSMUST00000117600.9	1595	5	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_4	1949.43562345618	583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTCTGGTGTAAGGAGCA	NA	False	NA	NA	False	AATAAA	-23	NA	27775626	27782644	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_27775686_27778506_27778678_27779901_27779986_27780434_27780486_27781414
transcript_23788.known	chr17	-	862	5	FSM	ENSMUSG00000062753.15	ENSMUST00000154473.9	862	5	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_4	17.0934929139717	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAACAAGGGGAGGTGGCC	NA	False	NA	NA	False	NA	NA	NA	27784730	27782546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27782991_27783122_27783229_27783358_27783385_27783535_27783725_27784633
transcript_23789.known	chr17	-	563	5	FSM	ENSMUSG00000062753.15	ENSMUST00000231753.2	563	5	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_3	99.6092365195116	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGTTGCCCTCCTTGGGT	NA	False	NA	45	True	AATAAA	-14	NA	27784691	27782746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27782991_27783122_27783229_27783358_27783385_27783595_27783725_27784633
transcript_2379.known	chr1	+	1828	6	FSM	ENSMUSG00000026421.15	ENSMUST00000097561.9	1828	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	177.543684765187	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTTCCTGTCTGTCT	NA	False	NA	24	True	AATAAA	-17	NA	135647798	135679970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_135647932_135667137_135667251_135672996_135673166_135674457_135674588_135678302_135678397_135678781
transcript_23792.known	chr17	-	608	4	FSM	ENSMUSG00000062753.15	ENSMUST00000231948.2	608	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	112.499876543142	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGCCCTCCTTGGGTGG	NA	False	NA	47	True	AATAAA	-16	NA	27784700	27782744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27782991_27783122_27783229_27783535_27783725_27784633
transcript_23795.known	chr17	-	677	4	FSM	ENSMUSG00000062753.15	ENSMUST00000080190.9	677	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	115.750689942748	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCCTCCTTGGGTGGAC	NA	False	NA	49	True	AATAAA	-18	NA	27784682	27782742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27782991_27783122_27783314_27783535_27783725_27784633
transcript_23797.known	chr17	-	2223	5	FSM	ENSMUSG00000024213.15	ENSMUST00000025050.13	2223	5	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_4	16.1458198924675	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTTTGTTCCATGTCAG	NA	False	NA	-18	True	AATAAA	-23	NA	27842469	27798355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27799929_27800981_27801067_27802185_27802231_27815697_27815809_27842060
transcript_23798.known	chr17	-	522	5	FSM	ENSMUSG00000052146.17	ENSMUST00000025052.14	522	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2686.58356467838	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCACTTGTGTATGTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	27854214	27849395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27849481_27851252_27851331_27853045_27853218_27853299_27853450_27854177
transcript_23799.nic	chr17	+	903	5	ISM	ENSMUSG00000040276.16	ENSMUST00000231350.2	1368	8	1437	0	245	0	3prime_fragment	FALSE	canonical	3	43	junction_3	6.05702071979286	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGCGTTTGCAGCCTACC	NA	False	NA	NA	False	TTTAAA	-45	NA	27924867	27927666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
transcript_2380.known	chr1	+	1823	6	FSM	ENSMUSG00000026421.15	ENSMUST00000027677.8	1823	6	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_1	35.0884596413123	592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTTCCTGTCTGTCT	NA	False	NA	24	True	AATAAA	-17	NA	135656884	135679970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_135657013_135667137_135667251_135672996_135673166_135674457_135674588_135678302_135678397_135678781
transcript_23800.known	chr17	+	1368	8	FSM	ENSMUSG00000040276.16	ENSMUST00000231350.2	1368	8	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_1	17.3511159436445	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGCGTTTGCAGCCTACC	NA	False	NA	NA	False	TTTAAA	-45	NA	27923430	27927666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_27923527_27923818_27924055_27924598_27924755_27924890_27925067_27925967_27926089_27926192_27926321_27926853_27927042_27927399
transcript_23801.known	chr17	-	1045	3	FSM	ENSMUSG00000024215.15	ENSMUST00000127622.3	1045	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	2.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTAGGTCCTCCAGTGTCT	NA	False	NA	NA	False	AATAAA	-14	NA	27936693	27933424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_27934021_27936142_27936290_27936391
transcript_23803.known	chr17	+	984	7	FSM	ENSMUSG00000024217.11	ENSMUST00000232873.2	984	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	752.710306529382	1546	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGTCCCTGTCCCTTGCA	NA	False	NA	21	True	AATAAA	-23	NA	28057123	28070942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_28057234_28058947_28059144_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
transcript_23805.known	chr17	+	882	6	FSM	ENSMUSG00000024217.11	ENSMUST00000233657.2	882	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	825.321658506549	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGCGTGTCCCTGTCCC	NA	False	NA	16	True	AATAAA	-18	NA	28059128	28070937	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_28059338_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
transcript_23806.known	chr17	+	758	6	FSM	ENSMUSG00000024217.11	ENSMUST00000071006.9	758	6	0	0	0	0	multi-exon	FALSE	canonical	3	1664	junction_1	167.935225607971	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGTCCCTGTCCCTT	NA	False	NA	18	True	AATAAA	-20	NA	28059060	28070939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_28059144_28059437_28059481_28061243_28061353_28064156_28064247_28066926_28067032_28070611
transcript_23807.known	chr17	+	1013	6	FSM	ENSMUSG00000024217.11	ENSMUST00000233752.2	1013	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	791.835184871195	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGTCCCTGTCCCTTGCA	NA	False	NA	21	True	AATAAA	-23	NA	28059108	28070942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_28059144_28059437_28059781_28061243_28061353_28064156_28064247_28066926_28067032_28070611
transcript_23808.known	chr17	-	2207	6	FSM	ENSMUSG00000024218.14	ENSMUST00000114848.8	2207	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	61.2483469164679	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTTCTCTGTGTTGCCCT	NA	False	NA	-3	True	AATAAA	-25	NA	28128216	28120095	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474_28127218_28127754
transcript_23809.known	chr17	-	1220	5	FSM	ENSMUSG00000024218.14	ENSMUST00000025057.5	1220	5	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_3	9.9373034571759	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACAGGGTTTCTCTGTGT	NA	False	NA	-9	True	AATAAA	-19	NA	28126698	28120101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_28120764_28121501_28121599_28122074_28122163_28124235_28124385_28126474
transcript_23810.known	chr17	-	1989	10	FSM	ENSMUSG00000062859.16	ENSMUST00000042692.13	1989	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	11.2787355915107	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCATTCTTCTTTGATGC	NA	False	NA	1	True	AATAAA	-20	NA	28299561	28285718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28298895_28299280_28299493
transcript_23811.known	chr17	-	1948	10	FSM	ENSMUSG00000062859.16	ENSMUST00000129046.9	1948	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_9	12.0349285902676	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGGCCATTCTTCTTTGAT	NA	False	NA	-1	True	AATAAA	-18	NA	28299577	28285720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28298895_28299280_28299548
transcript_23812.known	chr17	-	1752	10	FSM	ENSMUSG00000062859.16	ENSMUST00000114836.9	1752	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_8	13.923955731396	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCATTCTTCTTTGATGC	NA	False	NA	1	True	AATAAA	-20	NA	28299561	28285718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28299132_28299280_28299493
transcript_23813.known	chr17	-	1743	10	FSM	ENSMUSG00000062859.16	ENSMUST00000043925.16	1743	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_9	14.4743280617618	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGACGGCCATTCTTCTT	NA	False	NA	-5	True	AATAAA	-14	NA	28299613	28285724	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_28286143_28286763_28286928_28288156_28288339_28288431_28288647_28289396_28289534_28290584_28290806_28293625_28293747_28296959_28297033_28299132_28299280_28299548
transcript_23815.known	chr17	+	2864	14	FSM	ENSMUSG00000024220.15	ENSMUST00000073534.10	2864	14	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_10	10.6092512939298	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGGCTCCTCCATCATTT	NA	False	NA	4	True	AATAAA	-16	NA	28396102	28424860	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_28396500_28408770_28408927_28413939_28414021_28414121_28414200_28416747_28416948_28419084_28419202_28419412_28419489_28419981_28420108_28420234_28420415_28421088_28421323_28421408_28421573_28422059_28422225_28423428_28423543_28424084
transcript_23819.known	chr17	+	2277	11	FSM	ENSMUSG00000002257.9	ENSMUST00000002327.6	2277	11	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	14.7461859475595	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGCCCTTCCCTCCCTC	NA	False	NA	17	True	AATAAA	-22	NA	28426751	28447582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_28426913_28435938_28436080_28436574_28436761_28438718_28438956_28439050_28439198_28442645_28442755_28442861_28443161_28444818_28444986_28445074_28445274_28446780_28446872_28447042
transcript_23822.known	chr17	+	2025	10	FSM	ENSMUSG00000007570.17	ENSMUST00000114803.9	2025	10	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_4	20.9655802580218	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTGGTGGCTCAGCCCTG	306	False	NA	17	True	AATAAA	-19	NA	28532492	28545546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_28532857_28534572_28535162_28535832_28535878_28536131_28536198_28536441_28536586_28537006_28537131_28537302_28537382_28539763_28539831_28541619_28541746_28545125
transcript_23825.known	chr17	+	729	6	FSM	ENSMUSG00000037805.16	ENSMUST00000233427.2	729	6	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	3247.70076207769	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547541	28550006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_28547593_28547787_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
transcript_23828.known	chr17	+	949	6	FSM	ENSMUSG00000037805.16	ENSMUST00000129935.8	949	6	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_3	2914.49848859113	756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547557	28550006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_28547593_28547784_28547860_28547940_28548255_28548347_28548497_28549498_28549672_28549803
transcript_23834.known	chr17	+	1022	5	FSM	ENSMUSG00000037805.16	ENSMUST00000150103.3	1022	5	0	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_3	1550.72344004339	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCCTTGGTGTGCCTGT	NA	False	NA	-4	True	AATAAA	-15	NA	28547573	28550002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_28547593_28547784_28547860_28547940_28548497_28549498_28549672_28549803
transcript_23843.known	chr17	+	693	2	FSM	ENSMUSG00000037805.16	ENSMUST00000233852.2	693	2	0	0	0	0	multi-exon	FALSE	canonical	3	5715	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAGCTTAACAAAAACAAG	NA	False	NA	NA	False	NA	NA	NA	28547572	28548457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_28547593_28547784
transcript_23844.known	chr17	+	1202	4	FSM	ENSMUSG00000037805.16	ENSMUST00000232770.2	1202	4	0	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_2	1519.39724891155	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGGTGTGCCTGTGATT	NA	False	NA	0	True	AATAAA	-19	NA	28547589	28550006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_28547860_28547940_28548497_28549498_28549672_28549803
transcript_23845.known	chr17	+	901	5	FSM	ENSMUSG00000037805.16	ENSMUST00000152665.3	901	5	0	0	0	0	multi-exon	FALSE	canonical	3	5482	junction_3	1346.05653205948	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGCCTTGGTGTGCCTG	NA	False	NA	-5	True	AATAAA	-14	NA	28547559	28550001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_28547860_28547940_28548022_28548347_28548497_28549498_28549672_28549803
transcript_23846.known	chr17	-	2585	13	FSM	ENSMUSG00000002249.22	ENSMUST00000156862.3	2585	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	2.49861072509416	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGTTGTGCCATATGCAA	NA	False	NA	NA	False	ATTAAA	-19	NA	28569791	28550687	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_28551808_28551924_28552078_28552165_28552307_28552479_28552654_28552764_28552911_28553357_28553420_28553677_28553728_28553872_28554011_28554458_28554471_28555484_28555548_28559127_28559193_28560322_28560575_28569582
transcript_23848.nic	chr17	-	2964	7	NIC	ENSMUSG00000024222.18	novel	3858	14	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_6	192.900377282046	174	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCATTGTTCATGGCT	NA	False	NA	-14	True	AATAAA	-15	NA	28637519	28618070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28637368
transcript_2385.known	chr1	+	1435	2	FSM	ENSMUSG00000041801.6	ENSMUST00000038945.6	1435	2	0	0	0	0	multi-exon	FALSE	canonical	3	639	junction_1	0	183	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCTACTGAGTGAAATTC	6745	False	NA	22	True	AATGAA	-29	NA	135693856	135696874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_135694633_135696215
transcript_23850.nnic	chr17	-	2910	7	NNC	ENSMUSG00000024222.18	novel	3858	14	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	204.007080487146	178	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCATTGTTCATGGCT	NA	False	NA	-14	True	AATAAA	-15	NA	28637511	28618070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_28620126_28621582_28621823_28625058_28625245_28629483_28629568_28631007_28631099_28634842_28635000_28637414
transcript_23851.known	chr17	+	2055	1	FSM	ENSMUSG00000066170.8	ENSMUST00000095448.5	2055	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAACAAA	NA	False	NA	NA	False	NA	NA	NA	28742266	28744321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_28742300_28744300
transcript_23854.nnic	chr17	-	4398	17	NNC	ENSMUSG00000004865.17	novel	4653	16	NA	NA	-34	-2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	184.660996406253	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGGTTCCACAAGTTTG	NA	False	NA	-13	True	AATAAA	-18	NA	28841495	28806623	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_28808346_28808410_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
transcript_23859.known	chr17	-	4653	16	FSM	ENSMUSG00000004865.17	ENSMUST00000130643.9	4653	16	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	86.150875406657	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTCCACAAGTTTGGT	NA	False	NA	-11	True	AATAAA	-20	NA	28841683	28806621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28818844_28819216_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
transcript_23863.known	chr17	-	4804	15	FSM	ENSMUSG00000004865.17	ENSMUST00000233440.2	4804	15	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	84.536943982848	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGTTCCACAAGTTTGGT	NA	False	NA	-11	True	AATAAA	-20	NA	28841461	28806621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_28809216_28810174_28810268_28811191_28811262_28813143_28813252_28817875_28817977_28818444_28819431_28819842_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
transcript_2387.known	chr1	+	1105	10	FSM	ENSMUSG00000026418.17	ENSMUST00000152208.8	1105	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	37.8313345858061	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	7334	False	NA	43	True	ATTAAA	-24	NA	135727139	135738727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_135727235_135727710_135727759_135730331_135730362_135731019_135731024_135732790_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
transcript_23872.known	chr17	-	981	9	FSM	ENSMUSG00000004865.17	ENSMUST00000233129.2	981	9	0	0	0	0	multi-exon	FALSE	canonical	3	656	junction_8	93.865595401084	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGCTGCTGAGGCTTC	NA	False	NA	NA	False	AATAAA	-21	NA	28841425	28819677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_28819869_28821661_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
transcript_23873.known	chr17	-	1002	8	FSM	ENSMUSG00000004865.17	ENSMUST00000232751.2	1002	8	0	0	0	0	multi-exon	FALSE	canonical	3	656	junction_7	99.9697913555564	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTAGAGTGTTTTTATTT	NA	False	NA	NA	False	AGTAAA	-20	NA	28841425	28821449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_28821828_28822411_28822519_28824272_28824361_28825280_28825369_28826057_28826167_28827619_28827739_28840950_28841012_28841373
transcript_23877.known	chr17	+	2937	12	FSM	ENSMUSG00000004864.14	ENSMUST00000233984.2	2937	12	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_6	12.7227264607489	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTATTATATCTAAGTA	NA	False	NA	NA	False	AATAAA	-19	NA	28988270	28999207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_28988503_28988984_28989115_28990131_28990191_28994227_28994337_28994527_28994558_28995108_28995157_28995275_28995391_28995475_28995548_28996455_28996536_28996696_28996776_28997050_28997228_28997401
transcript_23878.nic	chr17	+	1506	11	NIC	ENSMUSG00000004864.14	novel	2937	12	NA	NA	14	193	intron_retention	FALSE	canonical	3	77	junction_10	10.3580886267689	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCCAGCTCAATGCCCCTT	NA	False	NA	5	True	NA	NA	NA	28988284	28997671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_28988503_28988984_28989115_28990131_28990191_28994227_28994337_28994527_28994558_28995108_28995391_28995475_28995548_28996455_28996536_28996696_28996776_28997050_28997228_28997401
transcript_2388.nic	chr1	+	1090	8	ISM	ENSMUSG00000026418.17	ENSMUST00000148201.8	1150	9	2633	0	-2591	0	3prime_fragment	FALSE	canonical	0	0	junction_1	37.4089370529098	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	980	False	NA	43	True	ATTAAA	-24	NA	135730203	135738727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_135730362_135731019_135731024_135732790_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
transcript_23882.known	chr17	-	1019	3	FSM	ENSMUSG00000045378.6	ENSMUST00000051526.6	1019	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTCTGTGTGTCTCTTTT	6213	False	NA	2	True	AATAAA	-18	NA	29161238	29152957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_29153781_29160215_29160344_29161170
transcript_23883.known	chr17	-	296	3	FSM	ENSMUSG00000045378.6	ENSMUST00000232977.2	296	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	13.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAAGGACAGACAGACAAG	4637	False	NA	NA	False	NA	NA	NA	29162814	29153675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_29153781_29160215_29160344_29162751
transcript_23884.known	chr17	+	4196	8	FSM	ENSMUSG00000005936.20	ENSMUST00000233197.2	4196	8	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	164.609370626217	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTTGTTATTTAATAGAA	NA	False	NA	NA	False	AATAAA	-16	NA	29171231	29188523	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29171544_29176852_29177032_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
transcript_23886.nic	chr17	+	2340	8	NIC	ENSMUSG00000005936.20	novel	2162	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	202.145431583808	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTCTCTCCAGTATTGAA	NA	False	NA	4	True	AATAAA	-15	NA	29171657	29186905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_29171732_29176852_29177032_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
transcript_23887.known	chr17	+	3853	7	FSM	ENSMUSG00000005936.20	ENSMUST00000118762.9	3853	7	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_1	75.1962247870345	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCTTGTTATTTAATAGAA	NA	False	NA	NA	False	AATAAA	-16	NA	29171395	29188523	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29171544_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
transcript_23889.known	chr17	+	2162	7	FSM	ENSMUSG00000005936.20	ENSMUST00000117672.9	2162	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	191.759760000777	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCTCTCTCCAGTATTG	NA	False	NA	2	True	AATAAA	-13	NA	29171654	29186903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29171732_29180387_29180662_29181783_29181887_29182224_29182346_29182934_29183133_29183947_29184059_29185625
transcript_2389.nic	chr1	+	1110	6	ISM	ENSMUSG00000026418.17	ENSMUST00000148201.8	1150	9	5038	0	-186	0	3prime_fragment	FALSE	canonical	3	26	junction_1	26.8730348118704	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	3385	False	NA	43	True	ATTAAA	-24	NA	135732608	135738727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
transcript_23892.known	chr17	-	3354	14	FSM	ENSMUSG00000024006.18	ENSMUST00000119274.3	3354	14	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_13	173.563487011723	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTGGATTTCTTTTAT	NA	False	NA	2	True	AATAAA	-21	NA	29226969	29189853	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219119_29226684
transcript_23895.known	chr17	-	3351	14	FSM	ENSMUSG00000024006.18	ENSMUST00000009138.13	3351	14	0	0	0	0	multi-exon	FALSE	canonical	3	678	junction_3	53.1740471465247	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGGTGGATTTCTTTTAT	NA	False	NA	2	True	AATAAA	-21	NA	29226969	29189853	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_29191651_29192018_29192114_29193255_29193352_29193519_29193644_29194792_29194911_29196513_29196576_29198176_29198280_29201005_29201161_29203050_29203175_29207151_29207236_29210271_29210395_29211390_29211443_29218982_29219116_29226684
transcript_23898.known	chr17	-	627	4	FSM	ENSMUSG00000024006.18	ENSMUST00000232723.2	627	4	0	0	0	0	multi-exon	FALSE	canonical	3	701	junction_1	11.2644968324772	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGACATGTTCACTTCTCTT	NA	False	NA	NA	False	AATATA	-15	NA	29226886	29210154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_29210395_29211390_29211443_29218982_29219116_29226684
transcript_2390.known	chr1	+	721	5	FSM	ENSMUSG00000026418.17	ENSMUST00000129217.2	721	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	28.0624304008046	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCAGTGGTCCTGGAACT	3571	False	NA	NA	False	AGTAAA	-16	NA	135732794	135737647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363
transcript_23900.known	chr17	-	820	1	FSM	ENSMUSG00000024006.18	ENSMUST00000233723.2	820	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAACAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	29226841	29226021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_29226000_29226800
transcript_23904.known	chr17	+	2594	7	FSM	ENSMUSG00000071172.14	ENSMUST00000037776.16	2594	7	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	890.897051042125	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTGTGTCTAGAAGGT	NA	False	NA	15	True	AATAAA	-17	NA	29251605	29261871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29258427_29258884_29259748_29259788_29260180_29260268_29260357
transcript_2391.nic	chr1	+	1266	5	ISM	ENSMUSG00000026418.17	ENSMUST00000148201.8	1150	9	5286	0	62	0	3prime_fragment	FALSE	canonical	3	46	junction_1	20.1912728672563	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	3633	False	NA	43	True	ATTAAA	-24	NA	135732856	135738727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
transcript_23915.known	chr17	+	2618	6	FSM	ENSMUSG00000071172.14	ENSMUST00000130216.3	2618	6	0	0	0	0	multi-exon	FALSE	canonical	3	1420	junction_1	257.831728070849	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTGGAGTATATTTTTATC	NA	False	NA	18	True	ATTAAA	-20	NA	29251601	29262347	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29251761_29255214_29255423_29257463_29257599_29259748_29259788_29260180_29260268_29260357
transcript_23929.known	chr17	+	1125	3	FSM	ENSMUSG00000117007.2	ENSMUST00000233006.2	1125	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	3.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAGCAAACCTGCAGACT	1609	False	NA	NA	False	NA	NA	NA	29275833	29278719	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29275960_29276834_29276933_29277818
transcript_23930.nnic	chr17	+	1424	3	NNC	ENSMUSG00000117007.2	novel	1247	3	NA	NA	306	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAGCAAACCTGCAGACT	1915	False	NA	NA	False	NA	NA	NA	29276139	29278719	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_29276565_29276834_29276933_29277818
transcript_23931.known	chr17	-	1389	2	FSM	ENSMUSG00000085912.3	ENSMUST00000232704.2	1389	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTAGCTCCATCATTGCC	NA	False	NA	NA	False	NA	NA	NA	29291879	29278026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_29279333_29291796
transcript_23933.known	chr17	+	1148	3	FSM	ENSMUSG00000117007.2	ENSMUST00000232746.2	1148	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGCAGACTGGTAAGCAAA	4702	False	NA	NA	False	NA	NA	NA	29273643	29278729	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29273824_29275356_29275414_29277818
transcript_23934.known	chr17	-	1433	2	FSM	ENSMUSG00000085912.3	ENSMUST00000233135.2	1433	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACGTAGCTCCATCATTGC	NA	False	NA	NA	False	NA	NA	NA	29291821	29278027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_29279333_29291693
transcript_23941.known	chr17	+	922	3	FSM	ENSMUSG00000023067.15	ENSMUST00000119901.9	922	3	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_1	538	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATACCGGAGGAACAGTC	1857	False	NA	NA	False	NA	NA	NA	29309952	29318675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29310076_29317370_29317812_29318317
transcript_23943.known	chr17	+	1913	3	FSM	ENSMUSG00000023067.15	ENSMUST00000023829.8	1913	3	0	0	0	0	multi-exon	FALSE	canonical	3	1159	junction_2	73.5	1227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATGTCTTGTCATTAGA	4647	False	NA	24	True	NA	NA	NA	29312742	29319696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29312836_29317370_29317812_29318317
transcript_23949.known	chr17	-	333	1	FSM	ENSMUSG00000067575.6	ENSMUST00000147311.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	29356278	29355945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_29355900_29356300
transcript_2395.nnic	chr1	+	778	4	NNC	ENSMUSG00000026418.17	novel	1105	10	NA	NA	3204	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	38.7384391356527	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	6775	False	NA	43	True	ATTAAA	-24	NA	135735998	135738727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_135736113_135736370_135736548_135737363_135737474_135738350
transcript_23951.known	chr17	-	5708	21	FSM	ENSMUSG00000024008.17	ENSMUST00000024805.15	5708	21	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_14	46.1512730051946	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGTCACTCCCATGCTC	8347	False	NA	NA	False	AGTAAA	-28	NA	29457141	29374529	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29407266_29407371_29421478_29421543_29423662_29423723_29428397_29428475_29428663_29428704_29430621_29430726_29444164_29444212_29445166_29445208_29456586
transcript_23953.nnic	chr17	-	2486	14	NNC	ENSMUSG00000024008.17	novel	5708	21	NA	NA	-5052	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_8	10.3443664455472	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATAGACCCCCCCTCTCC	3072	False	NA	-9	True	AGTAAA	-14	NA	29408129	29376889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29407266_29407371_29408003
transcript_23954.nnic	chr17	-	2506	13	NNC	ENSMUSG00000024008.17	novel	2332	12	NA	NA	-1507	0	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_12	27.4969695299925	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGATAGACCCCCCCTCTCC	6617	False	NA	-9	True	AGTAAA	-14	NA	29404584	29376889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_29378215_29378925_29379000_29379292_29379351_29380083_29380187_29380392_29380521_29381226_29381409_29383647_29383695_29385691_29385754_29388378_29388433_29392298_29392375_29395135_29395178_29402896_29403002_29404334
transcript_23960.known	chr17	-	1476	4	FSM	ENSMUSG00000024007.16	ENSMUST00000135123.3	1476	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	716.343182808042	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTTGTGGTCTAGTAT	9927	False	NA	-28	True	AATAAA	-19	NA	29482922	29469805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_29470700_29471223_29471293_29480710_29481147_29482845
transcript_23961.known	chr17	-	1462	4	FSM	ENSMUSG00000024007.16	ENSMUST00000024802.10	1462	4	0	0	0	0	multi-exon	FALSE	canonical	3	1356	junction_1	125.889722464633	1146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCGGCCTTTTCTCTTTT	9689	False	NA	1	True	NA	NA	NA	29483160	29469776	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_29470700_29471223_29471293_29480710_29480866_29482845
transcript_23964.known	chr17	+	1270	9	FSM	ENSMUSG00000052712.18	ENSMUST00000234028.2	1270	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	118.386813032533	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCATGGGTTGGTTGCTTA	484	False	NA	14	True	AATAAA	-15	NA	29487934	29520498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515536_29515664_29517615_29517740_29520329
transcript_23967.known	chr17	+	1073	8	FSM	ENSMUSG00000052712.18	ENSMUST00000235114.2	1073	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	114.986245850075	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCATGGGTTGGTTGCT	468	False	NA	12	True	AATAAA	-13	NA	29487918	29520496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
transcript_23968.known	chr17	+	13859	8	FSM	ENSMUSG00000052712.18	ENSMUST00000234711.2	13859	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	113.402479906656	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAAAATCTTTGTTTGTT	348	False	NA	NA	False	ACTAAA	-15	NA	29487798	29533039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29487977_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
transcript_2397.nnic	chr1	+	575	3	NNC	ENSMUSG00000026418.17	novel	1105	10	NA	NA	3204	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	44.5	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCAGTGGTCCTGGAACT	6775	False	NA	NA	False	AGTAAA	-16	NA	135735998	135737647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_135736113_135736370_135736548_135737363
transcript_23970.nnic	chr17	+	900	7	NIC	ENSMUSG00000052712.18	novel	1073	8	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_2	129.043920171906	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGGTTGGTTGCTTAG	436	False	NA	15	True	AATAAA	-16	NA	29487886	29520499	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_29487977_29496830_29496922_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
transcript_23973.known	chr17	+	773	6	FSM	ENSMUSG00000052712.18	ENSMUST00000235050.2	773	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	140.841187157735	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGGTTGCTTAGTTAC	476	False	NA	19	True	AATAAA	-20	NA	29487926	29520503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29487977_29512980_29513136_29513248_29513389_29515533_29515664_29517615_29517740_29520329
transcript_23974.known	chr17	+	1148	8	FSM	ENSMUSG00000052712.18	ENSMUST00000120346.9	1148	8	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_7	117.328424448952	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCATGGGTTGGTTGCTT	484	False	NA	13	True	AATAAA	-14	NA	29487934	29520497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29487977_29496830_29496922_29501033_29501242_29501651_29501866_29512980_29513136_29513248_29513389_29515533_29515664_29520329
transcript_23975.known	chr17	-	1897	12	FSM	ENSMUSG00000024012.19	ENSMUST00000118366.9	1897	12	0	0	0	0	multi-exon	FALSE	canonical	3	643	junction_4	160.665917948029	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGCAAGCCTCTTAT	NA	False	NA	-9	True	AATAAA	-21	NA	29566908	29551049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555191_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566440
transcript_23976.known	chr17	-	1185	13	FSM	ENSMUSG00000024012.19	ENSMUST00000234129.2	1185	13	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	348.277298124481	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTGCAAGCCTCTTAT	NA	False	NA	-9	True	AATAAA	-21	NA	29566526	29551049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_29551254_29551634_29551753_29552487_29552564_29552748_29552817_29552931_29552980_29555140_29555286_29557715_29557776_29558764_29558817_29559041_29559100_29559394_29559473_29559764_29559872_29561796_29561882_29566440
transcript_23977.known	chr17	+	867	2	FSM	ENSMUSG00000024014.9	ENSMUST00000234270.2	867	2	0	0	0	0	multi-exon	FALSE	canonical	3	1879	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCCCTGAATCCATCC	NA	False	NA	NA	False	NA	NA	NA	29712380	29713938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29712873_29713563
transcript_23978.known	chr17	+	3595	13	FSM	ENSMUSG00000042203.9	ENSMUST00000048677.9	3595	13	0	0	0	0	multi-exon	TRUE	canonical	3	108	junction_11	15.481844205391	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGGGGCTTTGGTTTCCTG	NA	False	NA	11	True	AATAAA	-17	NA	29768758	29825869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29768969_29783405_29783463_29787365_29787674_29789560_29789741_29790638_29790710_29791943_29792073_29794129_29794196_29797802_29797918_29813650_29813758_29814821_29814898_29818812_29818941_29819119_29819216_29823817
transcript_2398.known	chr1	+	1150	9	FSM	ENSMUSG00000026418.17	ENSMUST00000148201.8	1150	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	37.7721375487276	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTTCTGTAGCCCTGT	7765	False	NA	43	True	ATTAAA	-24	NA	135727570	135738727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_135727759_135730331_135730362_135731019_135731024_135732790_135732833_135733236_135733369_135735258_135735349_135736370_135736548_135737363_135737474_135738350
transcript_23980.nnic	chr17	+	1985	9	NNC	ENSMUSG00000042203.9	novel	3595	13	NA	NA	-11	-22088	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	44.8857925740428	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCATATGTATTTATGTATA	NA	False	NA	NA	False	AATAAA	-24	NA	29768747	29803780	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_29768969_29783405_29783463_29787365_29787674_29789560_29789741_29790638_29790710_29791943_29792073_29794129_29794196_29797802_29797918_29802942
transcript_23982.known	chr17	-	913	3	FSM	ENSMUSG00000079580.10	ENSMUST00000234979.2	913	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAGAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	29768645	29745000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_29745734_29764458_29764551_29768557
transcript_23983.known	chr17	+	6380	24	FSM	ENSMUSG00000024019.19	ENSMUST00000024816.13	6380	24	0	0	0	0	multi-exon	TRUE	canonical	3	368	junction_15	33.7979652859003	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTTTCTCTCTGATGT	NA	False	NA	28	True	AATAAA	-30	NA	29879568	29924953	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29879746_29882145_29882281_29893112_29893265_29895104_29895264_29897963_29898057_29899562_29899635_29900891_29900987_29901095_29901169_29904824_29905024_29906009_29906129_29908868_29908966_29909281_29909415_29910218_29910399_29913221_29913279_29913758_29913817_29914399_29914469_29916057_29916190_29916922_29917046_29917611_29917704_29918193_29918263_29919207_29919256_29919944_29920058_29920458_29920568_29921127
transcript_23987.known	chr17	+	1780	9	FSM	ENSMUSG00000090083.12	ENSMUST00000234362.2	1780	9	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_3	87.2496418330757	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCTCAGCTGGGCTTC	NA	False	NA	16	True	AATAAA	-15	NA	29833941	29860623	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29834053_29840482_29840612_29845479_29845817_29845920_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
transcript_23989.known	chr17	+	5404	8	FSM	ENSMUSG00000090083.12	ENSMUST00000024817.15	5404	8	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_5	10.0387006232919	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTGGCTCCCTGACT	NA	False	NA	NA	False	NA	NA	NA	29833763	29863965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_29834053_29840482_29840612_29845479_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
transcript_23990.nnic	chr17	+	1978	8	NNC	ENSMUSG00000090083.12	novel	1780	9	NA	NA	0	0	intron_retention	FALSE	canonical	1	5	junction_1	96.1378686882457	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCTCAGCTGGGCTTC	NA	False	NA	16	True	AATAAA	-15	NA	29833837	29860623	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_29834053_29840492_29840612_29845479_29846224_29847933_29847997_29850644_29850735_29853634_29853743_29854791_29854997_29860189
transcript_23992.known	chr17	-	1397	4	FSM	ENSMUSG00000024018.19	ENSMUST00000128751.3	1397	4	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_3	23.9072281027215	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTCTGTAAGACACACTGA	NA	False	NA	NA	False	AGTAAA	-20	NA	29936018	29922305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_29923444_29924244_29924298_29924462_29924558_29935907
transcript_23993.known	chr17	-	215	2	FSM	ENSMUSG00000024018.19	ENSMUST00000174437.2	215	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAGTGAAGTGGTGATTTA	NA	False	NA	NA	False	ATTAAA	-16	NA	29935938	29931946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_29932131_29935907
transcript_23994.known	chr17	+	3039	6	FSM	ENSMUSG00000044477.13	ENSMUST00000226208.3	3039	6	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	13.1301180497359	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGATTGTCTGTGTTGGC	NA	False	NA	7	True	ATTAAA	-16	NA	30223706	30428996	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_30224283_30279783_30279825_30354296_30354480_30372276_30372343_30411536_30411705_30426991
transcript_23996.known	chr17	-	7058	11	FSM	ENSMUSG00000062202.15	ENSMUST00000168787.8	7058	11	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	22.2551117723547	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGAGTTTGTGCCTTCTGT	NA	False	NA	NA	False	AATAAA	-16	NA	30795462	30434497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_30439545_30447773_30447853_30493827_30493936_30518504_30518695_30553196_30553307_30732529_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_30795119
transcript_23998.nic	chr17	-	1354	7	NIC	ENSMUSG00000062202.15	novel	1272	7	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	40.0641846153006	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACCCCTGTCAGTGTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	30795239	30728447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_30728501_30732529_30732650_30736077_30736298_30743686_30743952_30746275_30746640_30749127_30749340_30795119
transcript_23999.known	chr17	-	414	1	FSM	ENSMUSG00000117962.2	ENSMUST00000235315.2	414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTATGCCATATTTTCA	9280	False	NA	NA	False	NA	NA	NA	30615007	30614593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_30614600_30615000
transcript_24.known	ERCC-00071	+	626	1	FSM	ERCC-00071A	DQ883654	626	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00071_+_0_600
transcript_2400.known	chr1	+	2993	10	FSM	ENSMUSG00000041782.15	ENSMUST00000038760.10	2993	10	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	17.5119007154183	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTTCACATAAACTCCGT	5618	False	NA	NA	False	NA	NA	NA	135746335	135761080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_135746755_135753492_135753631_135754901_135755785_135756452_135756558_135757426_135757471_135758637_135758711_135758820_135758959_135759262_135759350_135759611_135759687_135760049
transcript_24001.known	chr17	+	3099	11	FSM	ENSMUSG00000033826.11	ENSMUST00000237551.2	3099	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	9.52942810456116	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAATAAAATAAAAAT	199	False	NA	NA	False	NA	NA	NA	30845908	30878195	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_30846117_30854294_30854808_30854915_30855051_30862229_30862315_30863530_30863683_30867389_30867580_30868597_30868762_30872206_30872384_30875550_30875665_30875859_30875968_30876942
transcript_24003.known	chr17	-	1127	8	FSM	ENSMUSG00000024026.14	ENSMUST00000235547.2	1127	8	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_7	1304.94427123169	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGGGCAGCAAGTCCCT	NA	False	NA	-12	True	AATAAA	-24	NA	30845845	30811834	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_30812049_30813088_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822993_30823077_30831441_30831771_30845755
transcript_24013.nnic	chr17	-	1033	3	NNC	ENSMUSG00000099474.2	novel	845	4	NA	NA	-883	0	at_least_one_novel_splicesite	FALSE	canonical	3	177	junction_2	127.5	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTTTCCTCTGAGATG	NA	False	NA	-1	True	AATAAA	-25	NA	30846762	30841414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_30841669_30843173_30843588_30846397
transcript_24016.known	chr17	-	2024	7	FSM	ENSMUSG00000024026.14	ENSMUST00000024823.14	2024	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	1513.88137103128	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGGGCAGCAAGTCCCT	NA	False	NA	-12	True	AATAAA	-24	NA	30831586	30811834	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_30813201_30815347_30815438_30816778_30816847_30819012_30819154_30822360_30822492_30822993_30823077_30831441
transcript_24017.known	chr17	-	898	6	FSM	ENSMUSG00000024026.14	ENSMUST00000235171.2	898	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	1306.85751327373	628	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACAGCTCCCTTTAGAG	NA	False	NA	NA	False	NA	NA	NA	30831576	30812839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_30813201_30815347_30815438_30816778_30816867_30819012_30819154_30822993_30823077_30831441
transcript_24018.known	chr17	-	845	4	FSM	ENSMUSG00000099474.2	ENSMUST00000188852.2	845	4	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_3	117.235754879739	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTTTCCTCTGAGATG	NA	False	NA	-1	True	AATAAA	-25	NA	30845879	30841414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_30841669_30843173_30843588_30843854_30843908_30845755
transcript_24019.known	chr17	+	2539	13	FSM	ENSMUSG00000042345.16	ENSMUST00000151620.9	2539	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	6.05300659911163	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTACCTTATGATTCTATT	NA	False	NA	NA	False	NA	NA	NA	31431086	31461064	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_31431206_31432705_31432893_31434010_31434210_31436937_31437108_31438555_31438765_31447077_31447205_31450385_31450486_31451261_31451385_31454456_31454550_31456108_31456254_31456861_31456969_31458149_31458260_31460214
transcript_2402.known	chr1	+	1097	15	FSM	ENSMUSG00000026414.14	ENSMUST00000179863.8	1097	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	7.82362982722658	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATATGGAATAGTGTTTCT	793	False	NA	1	True	AATAAA	-16	NA	135768612	135779998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_135768651_135769638_135769650_135769752_135769765_135771522_135771553_135773292_135773383_135773635_135773672_135774459_135774494_135775446_135775511_135775718_135775836_135776548_135776627_135777087_135777199_135778448_135778559_135779089_135779181_135779433_135779475_135779764
transcript_24023.known	chr17	-	1191	9	FSM	ENSMUSG00000024033.11	ENSMUST00000024832.9	1191	9	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_8	7.5	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCTCTGATGTCGCTTC	NA	False	NA	-1	True	AATAAA	-26	NA	31496357	31473992	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_31474194_31477071_31477201_31477761_31477922_31480728_31480801_31484787_31484924_31485316_31485408_31492290_31492397_31492498_31492613_31496175
transcript_24025.known	chr17	-	1026	8	FSM	ENSMUSG00000024033.11	ENSMUST00000235144.2	1026	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_7	21.3101489666213	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAATGAGCCTCTGATGT	NA	False	NA	-7	True	AATAAA	-20	NA	31496312	31473998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_31474194_31477071_31477201_31477761_31477922_31480728_31480801_31484787_31484924_31485316_31485408_31492290_31492397_31496175
transcript_24026.known	chr17	+	3389	20	FSM	ENSMUSG00000024036.17	ENSMUST00000165149.3	3389	20	0	0	0	0	multi-exon	TRUE	canonical	3	70	junction_8	17.4641698891444	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGATTTCCATCCAAGTC	NA	False	NA	NA	False	AATAAA	-45	NA	31515188	31569701	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_31515890_31519263_31519482_31526253_31526336_31534467_31534601_31535114_31535194_31538028_31538165_31540021_31540099_31541072_31541240_31544639_31544678_31547122_31547204_31552545_31552672_31554707_31554799_31556343_31556407_31556964_31557051_31557916_31557966_31559185_31559260_31559907_31559987_31565383_31565482_31568328_31568394_31568755
transcript_24029.known	chr17	+	1891	19	FSM	ENSMUSG00000041119.13	ENSMUST00000127929.8	1891	19	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_18	14.1770114735436	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTCTGTATTTTTTTTCT	NA	False	NA	NA	False	AATATA	-15	NA	31605227	31695133	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_31605331_31633074_31633146_31634253_31634332_31639218_31639263_31662139_31662195_31662811_31662883_31667340_31667426_31672375_31672455_31674027_31674103_31678048_31678136_31678874_31678980_31679152_31679236_31680544_31680702_31685328_31685443_31688767_31688873_31689654_31689784_31690732_31690829_31692131_31692254_31694901
transcript_2403.known	chr1	+	1112	15	FSM	ENSMUSG00000026414.14	ENSMUST00000112087.9	1112	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.24280762550118	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATATGGAATAGTGTTTCT	775	False	NA	1	True	AATAAA	-16	NA	135768594	135779998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_135768651_135769638_135769650_135771522_135771553_135773292_135773383_135773635_135773672_135774459_135774494_135775446_135775511_135775718_135775836_135776548_135776627_135777087_135777199_135778116_135778126_135778448_135778559_135779089_135779181_135779433_135779475_135779764
transcript_24031.nic	chr17	+	1971	19	NIC	ENSMUSG00000041119.13	novel	2089	19	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_17	17.2212365309324	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTCTGTATTTTTTTTCT	NA	False	NA	NA	False	AATATA	-15	NA	31605178	31695133	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_31605331_31633074_31633146_31634253_31634332_31639218_31639263_31662139_31662195_31662811_31662883_31667340_31667426_31672375_31672455_31674027_31674103_31678048_31678136_31678874_31678980_31679152_31679236_31680544_31680702_31685328_31685443_31688767_31688873_31689654_31689784_31690732_31690857_31692131_31692254_31694898
transcript_24036.known	chr17	-	1897	11	FSM	ENSMUSG00000024037.14	ENSMUST00000236665.2	1897	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	145.464634877347	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTGGAATGTTCAGCAG	NA	False	NA	-17	True	AATAAA	-17	NA	31731283	31715095	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_31715903_31717471_31717542_31717962_31718147_31718782_31718848_31719587_31719687_31720188_31720250_31721744_31721858_31722483_31722626_31728742_31728887_31729551_31729621_31731140
transcript_24039.known	chr17	+	1582	4	FSM	ENSMUSG00000024038.18	ENSMUST00000046288.16	1582	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_3	1707.19269237216	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGTGGTTATTTCCCCTC	NA	False	NA	31	True	AATAAA	-21	NA	31739091	31750305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_31739236_31740542_31740667_31746283_31747376_31750083
transcript_2404.nnic	chr1	+	1127	7	NNC	ENSMUSG00000026411.18	novel	1806	6	NA	NA	38	250	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_6	154.861676630756	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGCAGATCTCAAGGGAGA	NA	False	NA	24	True	ATTAAA	-19	NA	135945742	135962768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_135945801_135946243_135946346_135947395_135947488_135952355_135952465_135955134_135955267_135961805_135961908_135962236
transcript_24041.known	chr17	+	645	3	FSM	ENSMUSG00000024038.18	ENSMUST00000191598.3	645	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	1845	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAATGTCTGTGGCTTTGAG	NA	False	NA	NA	False	NA	NA	NA	31739158	31746219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_31739236_31740542_31740667_31745775
transcript_24042.known	chr17	+	493	3	FSM	ENSMUSG00000024038.18	ENSMUST00000064798.16	493	3	0	0	0	0	multi-exon	FALSE	canonical	3	3604	junction_2	48.5	1204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGTGGTTATTTCCCCTC	NA	False	NA	31	True	AATAAA	-21	NA	31739088	31750305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_31739236_31740542_31740667_31750083
transcript_24045.known	chr17	+	2014	11	FSM	ENSMUSG00000006705.14	ENSMUST00000237248.2	2014	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	40.2970222224918	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCACATGCTTGTCTTTCG	NA	False	NA	NA	False	GATAAA	-16	NA	31783780	31824505	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_31783863_31802669_31802778_31807433_31807562_31809576_31809749_31811078_31811250_31814201_31814299_31815769_31815868_31818488_31818618_31821759_31821837_31822160_31822334_31823726
transcript_24049.known	chr17	+	1692	1	FSM	ENSMUSG00000118239.2	ENSMUST00000236000.2	1692	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTAAGTGTCACAGTTTTT	NA	False	NA	NA	False	TTTAAA	-5	NA	31786136	31787828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_31786100_31787800
transcript_2405.known	chr1	+	1806	6	FSM	ENSMUSG00000026411.18	ENSMUST00000063719.15	1806	6	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	45.0759359303831	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTCTAAGCAAAACCCAGAT	NA	False	NA	NA	False	ATTAAA	-18	NA	135945704	135963080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_135945801_135946243_135946346_135947395_135947488_135952355_135952465_135955134_135955267_135961805
transcript_24050.known	chr17	+	1855	3	FSM	ENSMUSG00000006705.14	ENSMUST00000176895.2	1855	3	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	18	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGATTAGGAG	NA	False	NA	NA	False	NA	NA	NA	31783732	31809050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_31783863_31802669_31802778_31807433
transcript_24051.known	chr17	+	2170	12	FSM	ENSMUSG00000006705.14	ENSMUST00000175806.9	2170	12	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	48.0870422916989	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTATGACTATATTGAGGA	NA	False	NA	NA	False	TATAAA	-15	NA	31783835	31824466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_31783863_31800777_31801025_31802669_31802778_31807433_31807562_31809576_31809749_31811078_31811250_31814198_31814299_31815769_31815868_31818488_31818618_31821759_31821837_31822160_31822334_31823726
transcript_24053.known	chr17	-	2533	17	FSM	ENSMUSG00000024039.16	ENSMUST00000067801.14	2533	17	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_16	84.4695766237762	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCCTTGGTGTGAGTGTC	1872	False	NA	1	True	NA	NA	NA	31856212	31831596	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_31832268_31833502_31833545_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852126_31856056
transcript_24057.known	chr17	-	2403	16	FSM	ENSMUSG00000024039.16	ENSMUST00000078509.12	2403	16	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_1	29.2615789047686	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCGTGTCGACCTTATT	1945	False	NA	-17	True	NA	NA	NA	31856139	31831614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_31832268_31834447_31834533_31835019_31835129_31836100_31836236_31836361_31836437_31838111_31838218_31839902_31839988_31840411_31840538_31841400_31841493_31843202_31843273_31843972_31844108_31844464_31844545_31844856_31844992_31846449_31846557_31851801_31852129_31856056
transcript_2406.known	chr1	+	847	6	FSM	ENSMUSG00000026411.18	ENSMUST00000117950.2	847	6	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_1	164.577519728546	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTTCCCTTCAAATGCCC	NA	False	NA	-54	True	GGGGCT	-18	NA	135945799	135962030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_135945987_135946243_135946346_135947395_135947488_135952355_135952465_135955134_135955267_135961805
transcript_24060.known	chr17	-	882	1	FSM	ENSMUSG00000118161.2	ENSMUST00000236305.2	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	7279	False	NA	NA	False	NA	NA	NA	31863753	31862871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_31862900_31863800
transcript_24061.known	chr17	-	975	9	FSM	ENSMUSG00000061613.14	ENSMUST00000237323.2	975	9	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_6	2395.95355495469	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGTGACTTCTTGTAA	NA	False	NA	-18	True	AATAAA	-18	NA	31877729	31866055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31871475_31871543_31873952_31874041_31877626
transcript_24068.known	chr17	-	1046	8	FSM	ENSMUSG00000061613.14	ENSMUST00000014684.6	1046	8	0	0	0	0	multi-exon	FALSE	canonical	3	4626	junction_6	706.208473585007	1605	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877866	31866054	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31870619_31870687_31873952_31874041_31877626
transcript_2407.known	chr1	-	2988	10	FSM	ENSMUSG00000041605.17	ENSMUST00000120339.8	2988	10	0	0	0	0	multi-exon	TRUE	canonical	3	39	junction_9	8.93736780097342	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGAAGGATTCTGTGTGT	NA	False	NA	-13	True	AATAAA	-20	NA	136162002	136141268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_136142157_136143493_136144179_136147460_136147635_136147868_136148080_136148809_136148864_136153073_136153297_136153889_136154007_136154517_136154643_136155251_136155401_136161640
transcript_24070.known	chr17	-	923	8	FSM	ENSMUSG00000061613.14	ENSMUST00000166526.9	923	8	0	0	0	0	multi-exon	FALSE	canonical	3	1007	junction_5	2353.82216310201	610	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTGACTTCTTGTAAC	NA	False	NA	-17	True	AATAAA	-19	NA	31877743	31866054	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31871475_31871543_31873952_31874041_31877626
transcript_24075.known	chr17	-	532	6	FSM	ENSMUSG00000061613.14	ENSMUST00000236475.2	532	6	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_5	2542.17667364013	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGGAGGTGGAGGTGGCGG	NA	False	NA	NA	False	NA	NA	NA	31877715	31866262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_31866330_31866976_31867070_31867156_31867291_31867640_31867740_31867818_31867869_31877626
transcript_24076.known	chr17	-	4521	14	FSM	ENSMUSG00000024042.8	ENSMUST00000024839.6	4521	14	0	0	0	0	multi-exon	FALSE	canonical	2	135	junction_9	20.6380472449028	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTGTGAGAGCCCATTC	NA	False	NA	-4	True	AATAAA	-34	NA	32074778	32063223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_32065618_32066006_32066236_32066868_32067151_32067605_32067823_32067932_32068056_32068492_32068649_32068901_32069126_32069699_32069824_32069914_32070040_32070208_32070371_32070506_32070571_32073181_32073299_32073867_32074039_32074645
transcript_24078.known	chr17	+	4874	16	FSM	ENSMUSG00000058392.14	ENSMUST00000081339.13	4874	16	0	0	0	0	multi-exon	TRUE	canonical	3	488	junction_12	76.5992747282172	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTTGATGTTGCCTC	NA	False	NA	22	True	ATTAAA	-24	NA	32255073	32281839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_32255579_32264902_32264986_32266647_32266706_32267526_32267613_32268399_32268462_32268922_32269053_32270119_32270185_32270656_32270824_32271712_32271802_32272830_32272929_32274078_32274099_32274884_32274972_32275529_32276231_32277497_32277639_32278247_32278312_32279321
transcript_2408.known	chr1	+	2166	8	FSM	ENSMUSG00000026404.13	ENSMUST00000027655.8	2166	8	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	8.75750407085377	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTATTTATTTCAGTCCT	NA	False	NA	10	True	AATAAA	-16	NA	136343008	136367896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_136343162_136344319_136345135_136347147_136347316_136352532_136352623_136360049_136360302_136361450_136361604_136362243_136362373_136367490
transcript_24089.known	chr17	-	3115	9	FSM	ENSMUSG00000002076.13	ENSMUST00000238192.2	3115	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	409.307036343134	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACCTTGCAGGGATTGAA	NA	False	NA	NA	False	AATAAA	-17	NA	32255323	32163742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_32165786_32206321_32206426_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418_32253677_32255269
transcript_24098.known	chr17	-	1479	7	FSM	ENSMUSG00000002076.13	ENSMUST00000133308.3	1479	7	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_1	334.770941590415	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGGGTTTAGGAAGTGGT	NA	False	NA	-13	True	AATAAA	-30	NA	32253511	32165055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_32165786_32226649_32226768_32230149_32230283_32232291_32232442_32241739_32241844_32252234_32252386_32253418
transcript_241.nic	chr1	+	479	4	ISM	ENSMUSG00000033813.16	ENSMUST00000081551.14	2547	10	-120	11135	-120	-11135	5prime_fragment	TRUE	canonical	3	1526	junction_2	170.069266934257	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAGAAAAAAGAGCCT	NA	False	NA	NA	False	GATAAA	-36	NA	4927916	4956993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_4928200_4937692_4937756_4948249_4948356_4956966
transcript_24101.known	chr17	-	1591	7	FSM	ENSMUSG00000037577.14	ENSMUST00000162117.3	1591	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	2.21108319357027	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCGGTCTGATGTTTAA	994	False	NA	NA	False	CATAAA	-26	NA	32408523	32403633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_32404096_32404189_32404327_32404419_32404524_32407149_32407279_32407384_32407543_32407759_32407846_32408008
transcript_24104.known	chr17	-	1823	9	FSM	ENSMUSG00000024002.19	ENSMUST00000237692.2	1823	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_8	78.3700157904795	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GACAAAGAAAAATAACAGCA	NA	False	NA	87	True	NA	NA	NA	32503107	32432536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_32432701_32433604_32433815_32439134_32439264_32440119_32440483_32440846_32441140_32443060_32443197_32444549_32444688_32448390_32448710_32503036
transcript_24108.known	chr17	-	3731	14	FSM	ENSMUSG00000024045.7	ENSMUST00000002699.7	3731	14	0	0	0	0	multi-exon	TRUE	canonical	3	426	junction_6	74.0811964579343	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTGTTCATTAATTAC	NA	False	NA	-1	True	AATAAA	-16	NA	32540159	32522645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32536040_32536321_32536819_32536853_32537744_32537784_32540058
transcript_2411.nnic	chr1	+	2011	7	NIC	ENSMUSG00000026404.13	novel	2166	8	NA	NA	24	-2	combination_of_known_splicesites	FALSE	canonical	2	4	junction_6	23.4004985701872	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCGTTATTTATTTCAGTC	NA	False	NA	8	True	AATAAA	-14	NA	136343032	136367894	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_136343162_136344319_136345135_136347147_136347316_136352532_136352623_136360049_136360302_136361450_136361604_136367490
transcript_24113.known	chr17	-	2021	12	FSM	ENSMUSG00000024045.7	ENSMUST00000236954.2	2021	12	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_10	162.409186321627	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTCCTAAAACGGACAG	NA	False	NA	-29	True	AATAAA	-22	NA	32540087	32523970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_32524681_32525463_32525560_32528392_32528524_32529551_32529646_32529926_32530069_32531259_32531348_32533084_32533119_32534415_32534463_32534628_32534759_32535160_32535642_32537744_32537784_32540058
transcript_24119.known	chr17	-	1987	15	FSM	ENSMUSG00000002625.11	ENSMUST00000236503.2	1987	15	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_11	68.7455007804221	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTTCGTTTGTGCTGTG	NA	False	NA	-1	True	AATAAA	-16	NA	32569569	32540398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557329_32557430_32557489_32557764_32557798_32564297_32564373_32569460
transcript_24121.known	chr17	-	2102	14	FSM	ENSMUSG00000002625.11	ENSMUST00000050214.9	2102	14	0	0	0	0	multi-exon	TRUE	canonical	3	272	junction_6	38.0609912279546	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTTCGTTTGTGCTGTGG	NA	False	NA	0	True	AATAAA	-17	NA	32569581	32540397	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_32540760_32540869_32540966_32551452_32551584_32551784_32551891_32551976_32552119_32553561_32553671_32554536_32554598_32554931_32555003_32555080_32555178_32555258_32555713_32557244_32557489_32557764_32557798_32564297_32564373_32569460
transcript_24129.known	chr17	+	2618	14	FSM	ENSMUSG00000061126.6	ENSMUST00000237491.2	2618	14	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	21.761482720107	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGTCTACTGGCATGGGG	NA	False	NA	NA	False	AATAGA	-14	NA	32671696	32712294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_32671771_32684452_32684556_32687434_32687658_32689777_32689923_32700047_32700102_32700753_32700882_32701060_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
transcript_2413.known	chr1	+	1364	2	FSM	ENSMUSG00000026404.13	ENSMUST00000129218.7	1364	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCACGGTATATTCTTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	136343008	136345530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_136343162_136344319
transcript_24135.nic	chr17	+	1830	8	ISM	ENSMUSG00000061126.6	ENSMUST00000003413.7	1599	12	13518	-673	3729	-122	3prime_fragment	FALSE	canonical	3	49	junction_7	8.14912039825809	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGTCCATCTCATCCGGT	NA	False	NA	NA	False	AGTAAA	-17	NA	32700953	32712126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
transcript_24136.nic	chr17	+	1998	8	ISM	ENSMUSG00000061126.6	ENSMUST00000003413.7	1599	12	13518	-841	3729	0	3prime_fragment	FALSE	canonical	3	49	junction_7	8.14912039825809	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGTCTACTGGCATGGGG	NA	False	NA	NA	False	AATAGA	-14	NA	32700953	32712294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_32701186_32702178_32702447_32705743_32705811_32705919_32706050_32708593_32708728_32710116_32710182_32710780_32710864_32711275
transcript_24140.known	chr17	+	2227	13	FSM	ENSMUSG00000048440.17	ENSMUST00000003416.15	2227	13	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_12	10.7625895273086	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCATGTCTTGGTTCCAT	NA	False	NA	20	True	NA	NA	NA	32755542	32770771	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_32755630_32755971_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
transcript_24143.known	chr17	+	2078	12	FSM	ENSMUSG00000048440.17	ENSMUST00000165515.8	2078	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	22.7559818672762	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCATGTCTTGGTTCCATT	NA	False	NA	21	True	NA	NA	NA	32755550	32770772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_32755630_32755968_32756171_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
transcript_24145.known	chr17	+	2242	13	FSM	ENSMUSG00000048440.17	ENSMUST00000169591.8	2242	13	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_1	14.6806278249036	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCATGTCTTGGTTCCATT	NA	False	NA	21	True	NA	NA	NA	32755531	32770772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_32755630_32755968_32756171_32759244_32759390_32761711_32761766_32761850_32761979_32763081_32763204_32763856_32764128_32765342_32765410_32765603_32765734_32769226_32769361_32769476_32769542_32769705_32769789_32770029
transcript_24146.nic	chr17	+	668	6	NIC	ENSMUSG00000048440.17	novel	2227	13	NA	NA	-1	523	combination_of_known_junctions	FALSE	canonical	3	16	junction_2	29.990665214363	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTTCTTGTTCGTTGACT	NA	False	NA	NA	False	AATAAA	-13	NA	32755530	32763922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_32755630_32755971_32756171_32761711_32761766_32761850_32761979_32763081_32763204_32763856
transcript_24148.known	chr17	-	10851	4	FSM	ENSMUSG00000024298.16	ENSMUST00000159086.10	10851	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	1.24721912892465	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTCTTTGGTGCTGTCAT	NA	False	NA	-5	True	NA	NA	NA	33007261	32984469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_32994983_32996130_32996192_32996374_32996502_33007111
transcript_24151.known	chr17	-	3536	4	FSM	ENSMUSG00000055202.12	ENSMUST00000200914.5	3536	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_3	3.09120616516523	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCACTGCTTTCATGT	4484	False	NA	2	True	ATTAAA	-25	NA	33028905	33014649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33017848_33019360_33019422_33019785_33019913_33028755
transcript_24153.known	chr17	-	5337	4	FSM	ENSMUSG00000095325.4	ENSMUST00000228075.3	5337	4	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	10.4986771653491	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTTCCAGTTTTGTTT	NA	False	NA	NA	False	ATTAAA	-22	NA	33110616	33098192	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33103140_33104676_33104738_33104930_33105058_33110414
transcript_24155.known	chr17	-	1752	13	FSM	ENSMUSG00000024055.16	ENSMUST00000075253.13	1752	13	0	0	0	0	multi-exon	FALSE	canonical	2	129	junction_12	13.5285192587117	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGAGCATCAGACCAAAAT	NA	False	NA	-7	True	AATAAA	-29	NA	33166376	33143661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33143929_33144297_33144381_33144510_33144576_33144663_33144798_33148111_33148242_33148443_33148511_33148828_33149097_33149514_33149637_33151386_33151515_33151602_33151657_33160029_33160175_33165778_33165978_33166286
transcript_24160.known	chr17	-	1389	10	FSM	ENSMUSG00000024055.16	ENSMUST00000139353.8	1389	10	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	48.4694125260177	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGAGTGACTATGAGC	NA	False	NA	-20	True	AATAAA	-16	NA	33166353	33143674	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33143929_33144297_33144381_33144510_33144576_33144663_33144798_33148111_33148242_33148443_33148511_33148828_33149097_33149514_33149637_33165778_33165978_33166286
transcript_24163.nic	chr17	-	819	4	NIC	ENSMUSG00000024295.10	novel	897	4	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_3	1.24721912892465	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTGATATTCATTGTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	33184722	33174970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_33175278_33176622_33176849_33179548_33179752_33184639
transcript_24164.known	chr17	-	762	4	FSM	ENSMUSG00000024295.10	ENSMUST00000234619.2	762	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4.02768199119819	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTGATATTCATTGTTA	NA	False	NA	NA	False	ATTAAA	-13	NA	33184669	33174970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33175278_33176622_33176849_33179548_33179752_33184643
transcript_24165.known	chr17	+	2376	4	FSM	ENSMUSG00000053600.9	ENSMUST00000039132.9	2376	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	5.18544972870135	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAAGTTGGCTGGCATAG	NA	False	NA	NA	False	AATAAA	-37	NA	33184787	33198207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_33184904_33194887_33195015_33195200_33195259_33196132
transcript_24169.known	chr17	+	2950	4	FSM	ENSMUSG00000053390.17	ENSMUST00000087666.11	2950	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	3.55902608401044	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATGGTGATCGGTCTTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	33212170	33224431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_33212233_33220597_33220725_33220931_33220993_33221731
transcript_24170.known	chr17	-	3407	4	FSM	ENSMUSG00000067430.8	ENSMUST00000087654.5	3407	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	5.73488351136175	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTGTTCAAATGAGATTT	2759	False	NA	-16	True	NA	NA	NA	33252376	33235836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33238944_33240431_33240484_33240679_33240807_33252255
transcript_24172.known	chr17	-	3544	4	FSM	ENSMUSG00000094441.3	ENSMUST00000008830.10	3544	4	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_3	10.077477638554	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTTTGTTGTGTTGTGGT	NA	False	NA	NA	False	ATTAAA	-16	NA	33474119	33458691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33461925_33462686_33462745_33462981_33463109_33473993
transcript_24174.known	chr17	+	5788	4	FSM	ENSMUSG00000096910.3	ENSMUST00000099414.5	5788	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	21.7613316585993	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTGTGTTGTGGTTT	NA	False	NA	16	True	ATTAAA	-18	NA	33508517	33526215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_33508644_33519554_33519682_33519918_33519977_33520738
transcript_24178.known	chr17	-	812	5	FSM	ENSMUSG00000003929.12	ENSMUST00000235063.2	812	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	15.2540978100968	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCACTTCTGATCAAGAT	NA	False	NA	NA	False	AATAAA	-23	NA	33577842	33554283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33554628_33555428_33555484_33555695_33555823_33557074_33557226_33577707
transcript_2418.known	chr1	+	4933	2	FSM	ENSMUSG00000041483.15	ENSMUST00000047734.15	4933	2	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGATATCACTTAGTCTCT	NA	False	NA	16	True	AATAAA	-29	NA	136552638	136557791	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_136552790_136553009
transcript_24180.known	chr17	-	6639	4	FSM	ENSMUSG00000003929.12	ENSMUST00000054072.9	6639	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	5.43650214343336	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTTGGTTGCTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	33577852	33548315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33554628_33555428_33555484_33555695_33555823_33577707
transcript_24182.known	chr17	-	2659	4	FSM	ENSMUSG00000055240.18	ENSMUST00000167107.10	2659	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	5.79271573232759	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGACTGATTTTTGCTTTT	NA	False	NA	NA	False	AATAAA	-35	NA	33613615	33599228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33601561_33605395_33605442_33605658_33605786_33613461
transcript_24184.known	chr17	+	884	5	FSM	ENSMUSG00000024299.18	ENSMUST00000234497.2	884	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	14.7648230602334	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACGAGTGATGGGCAGAA	NA	False	NA	NA	False	AATAAA	-39	NA	33743217	33750929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_33743233_33747257_33747445_33747653_33747803_33749106_33749264_33750553
transcript_24185.known	chr17	+	1798	5	FSM	ENSMUSG00000024299.18	ENSMUST00000174170.3	1798	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	5.3851648071345	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAATTAAAAAAGAAAATAAT	NA	False	NA	NA	False	NA	NA	NA	33743195	33751623	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_33743233_33747257_33747445_33747653_33748001_33749106_33749264_33750553
transcript_24186.known	chr17	+	2533	3	FSM	ENSMUSG00000024299.18	ENSMUST00000234715.2	2533	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAAGTCCGGCT	NA	False	NA	NA	False	NA	NA	NA	33743183	33749950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_33743233_33747257_33747445_33747653
transcript_24193.known	chr17	+	1211	7	FSM	ENSMUSG00000073423.11	ENSMUST00000166627.8	1211	7	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	162.952702749397	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTACCTATGCCTTC	4917	False	NA	29	True	AATACA	-19	NA	33848063	33850690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_33848191_33848595_33848673_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
transcript_24195.known	chr17	+	1197	6	FSM	ENSMUSG00000073423.11	ENSMUST00000073570.12	1197	6	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	31.6569107779012	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGAGTGCTCTTCTCCG	4917	False	NA	92	True	NA	NA	NA	33848063	33850753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33849656_33850102_33850438_33850515
transcript_24198.nic	chr17	+	1226	5	ISM	ENSMUSG00000073423.11	ENSMUST00000073570.12	1197	6	-14	63	-14	0	intron_retention	FALSE	canonical	3	354	junction_1	33.9659756226728	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTACCTATGCCTTC	4903	False	NA	29	True	AATACA	-19	NA	33848049	33850690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33849656_33850102
transcript_24199.known	chr17	+	1544	5	FSM	ENSMUSG00000073423.11	ENSMUST00000172455.3	1544	5	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	35.2233942146409	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATACATGATTTTTACCT	4928	False	NA	3	True	NA	NA	NA	33848074	33850664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_33848191_33848770_33849054_33849340_33849449_33849549_33850438_33850515
transcript_24203.known	chr17	-	2370	17	FSM	ENSMUSG00000059208.16	ENSMUST00000087582.13	2370	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	626.847466369411	2269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGGCTTGCCTTTTTTG	5740	False	NA	-8	True	AATAAA	-13	NA	33904393	33865212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33865634_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33888142_33888151_33889054_33889108_33896247_33896415_33904240
transcript_24204.known	chr17	-	2428	17	FSM	ENSMUSG00000059208.16	ENSMUST00000139302.8	2428	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	711.141860737891	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTTGCCTTTTTTGTTT	5771	False	NA	-5	True	AATAAA	-16	NA	33904362	33865209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33865720_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885504_33885620_33885660_33887958_33888053_33888142_33888151_33889054_33889108_33896247_33896415_33904240
transcript_24205.known	chr17	-	1398	5	FSM	ENSMUSG00000079557.12	ENSMUST00000172767.9	1398	5	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	25.5196003103497	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATGTTTCTAAGCTGTTC	2676	False	NA	-11	True	AATAAA	-33	NA	33937644	33910488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33911128_33915010_33915221_33921986_33922183_33928718_33928947_33937519
transcript_24206.known	chr17	-	2550	16	FSM	ENSMUSG00000059208.16	ENSMUST00000114385.9	2550	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	733.954748832197	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTTGCCTTTTTTGTTTT	5767	False	NA	-4	True	AATAAA	-17	NA	33904366	33865208	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33865720_33867786_33867839_33868568_33869372_33871246_33871301_33877361_33877440_33877843_33877889_33879186_33879289_33882198_33882260_33883558_33883609_33884465_33884620_33885467_33885660_33887958_33888053_33888142_33888151_33889054_33889108_33896247_33896415_33904240
transcript_24208.known	chr17	-	1544	5	FSM	ENSMUSG00000077450.14	ENSMUST00000173860.8	1544	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	253.00296440951	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCTTTGGTTTTTGTTAT	NA	False	NA	-71	True	NA	NA	NA	33979280	33965723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968877_33979196
transcript_24209.known	chr17	-	6109	5	FSM	ENSMUSG00000077450.14	ENSMUST00000057373.14	6109	5	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_1	25.4411084664171	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTGTCATGATGCTTCA	NA	False	NA	NA	False	NA	NA	NA	33979504	33961457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33966788_33967483_33967565_33967840_33968035_33968755_33968952_33979196
transcript_2421.known	chr1	-	1756	9	FSM	ENSMUSG00000026398.15	ENSMUST00000192929.6	1756	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_8	13.3041346956501	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCCACCCCTGGAAGCTT	NA	False	NA	NA	False	NA	NA	NA	136881368	136773200	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_136773449_136810001_136810150_136818420_136818541_136868146_136868788_136871024_136871167_136872696_136872816_136876459_136876598_136879839_136879903_136881231
transcript_24215.known	chr17	+	925	2	FSM	ENSMUSG00000090952.3	ENSMUST00000170103.3	925	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCTGATTTCATTTTC	3477	False	NA	19	True	NA	NA	NA	33978965	33980844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_33979562_33980515
transcript_24216.known	chr17	-	924	5	FSM	ENSMUSG00000077450.14	ENSMUST00000173987.2	924	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	258.561767282017	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCCCTTCACCAGTGTC	NA	False	NA	NA	False	NA	NA	NA	33979254	33966387	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33966788_33967483_33967560_33967840_33968035_33968755_33968952_33979196
transcript_24217.known	chr17	-	3308	7	FSM	ENSMUSG00000002289.17	ENSMUST00000002360.17	3308	7	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	6.14862224856557	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTGTTTGATTGCT	NA	False	NA	NA	False	AAAAAG	-1	NA	34000804	33992723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33994543_33995923_33996206_33996293_33996390_33997345_33997460_33999503_33999622_33999756_33999868_34000036
transcript_24218.known	chr17	-	1859	7	FSM	ENSMUSG00000002289.17	ENSMUST00000173869.8	1859	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_5	47.4812828620102	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAACATTTTGTTCTCTG	NA	False	NA	-11	True	AATAAA	-8	NA	34000517	33993881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_33994543_33995923_33996206_33996293_33996390_33997345_33997460_33999503_33999618_33999756_33999868_34000036
transcript_24220.known	chr17	+	2641	11	FSM	ENSMUSG00000042099.17	ENSMUST00000048560.11	2641	11	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_2	56.7176339421877	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCGTATTGTGTGGATGGAA	NA	False	NA	13	True	AATAAA	-16	NA	34029493	34041892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34029540_34035159_34035220_34036167_34037419_34037499_34037600_34037773_34037972_34038065_34038154_34038753_34038971_34040742_34040889_34040979_34041181_34041259_34041350_34041648
transcript_24226.known	chr17	+	783	6	FSM	ENSMUSG00000042099.17	ENSMUST00000173789.2	783	6	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	124.071592236096	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCGTATTGTGTGGATGGA	NA	False	NA	12	True	AATAAA	-15	NA	34029496	34041891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34029540_34035159_34035220_34040742_34040889_34040979_34041181_34041259_34041350_34041648
transcript_24231.known	chr17	-	382	4	FSM	ENSMUSG00000067288.14	ENSMUST00000173844.8	382	4	0	0	0	0	multi-exon	FALSE	canonical	3	11527	junction_1	4307.03060897722	13341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTCTAGAAATTGGTT	NA	False	NA	-25	True	AATAAA	-14	NA	34043536	34042023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34042091_34042166_34042305_34043272_34043321_34043407
transcript_24235.known	chr17	-	812	2	FSM	ENSMUSG00000067288.14	ENSMUST00000174788.2	812	2	0	0	0	0	multi-exon	FALSE	canonical	3	16929	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATAAAATTGTAAGTGGGG	NA	False	NA	NA	False	NA	NA	NA	34043458	34042559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34043321_34043407
transcript_24236.known	chr17	-	1443	1	FSM	ENSMUSG00000067288.14	ENSMUST00000234017.2	1443	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	36	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	False	NA	-27	True	AATAAA	-12	NA	34043468	34042025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34042000_34043500
transcript_24237.known	chr17	-	271	4	FSM	ENSMUSG00000067288.14	ENSMUST00000166693.3	271	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	9429.71906026662	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGTCTAGAAATTGG	NA	False	NA	-27	True	AATAAA	-12	NA	34043450	34042025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34042068_34042166_34042305_34043272_34043321_34043407
transcript_24238.known	chr17	-	372	3	FSM	ENSMUSG00000067288.14	ENSMUST00000173480.8	372	3	0	0	0	0	multi-exon	FALSE	canonical	3	11527	junction_1	5274.5	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTGTCTAGAAATTGGTT	NA	False	NA	-25	True	AATAAA	-14	NA	34043439	34042023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34042091_34042166_34042305_34043272
transcript_24242.known	chr17	+	528	4	FSM	ENSMUSG00000041881.14	ENSMUST00000048249.8	528	4	0	0	0	0	multi-exon	FALSE	canonical	3	7458	junction_2	513.174650798558	1400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTTTTCTTAGTATTTA	4074	False	NA	33	True	AATATA	-24	NA	34043545	34057291	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34043655_34044574_34044625_34048640_34048791_34057072
transcript_24248.known	chr17	+	438	3	FSM	ENSMUSG00000041881.14	ENSMUST00000173132.8	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	616	junction_1	4049.5	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCAATCTGTCTTTTCTT	4106	False	NA	25	True	AATATA	-16	NA	34043577	34057283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34043655_34048640_34048791_34057072
transcript_24251.known	chr17	+	610	2	FSM	ENSMUSG00000041881.14	ENSMUST00000173182.2	610	2	0	0	0	0	multi-exon	FALSE	canonical	3	8081	junction_1	0	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGCCTTGTCCTCAGGC	4096	False	NA	NA	False	NA	NA	NA	34043567	34045097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34043655_34044574
transcript_24252.known	chr17	+	419	2	FSM	ENSMUSG00000041881.14	ENSMUST00000174498.2	419	2	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGTTCTCTTGAACTT	4147	False	NA	11	True	NA	NA	NA	34043618	34044820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34043792_34044574
transcript_24253.known	chr17	+	2209	5	FSM	ENSMUSG00000002308.17	ENSMUST00000002379.15	2209	5	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_3	13.0072095393286	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGCATGGAAACAGAATT	6993	False	NA	NA	False	NA	NA	NA	34062064	34068748	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34062266_34064989_34065116_34066468_34066700_34066990_34067153_34067259
transcript_24254.known	chr17	+	1191	5	FSM	ENSMUSG00000002308.17	ENSMUST00000087559.8	1191	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	143.673240375513	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGCCTCTAGCCTGT	7328	False	NA	21	True	ATTAAA	-14	NA	34062399	34067725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34062606_34064989_34065116_34066468_34066700_34066990_34067153_34067259
transcript_24255.known	chr17	+	1417	4	FSM	ENSMUSG00000002308.17	ENSMUST00000234506.2	1417	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_3	11.8977121983832	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGCCTCTAGCCTGTTT	7055	False	NA	23	True	ATTAAA	-16	NA	34062126	34067727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34062266_34064989_34065116_34066468_34067153_34067259
transcript_24258.known	chr17	-	2357	11	FSM	ENSMUSG00000079553.12	ENSMUST00000173492.9	2357	11	0	0	0	0	multi-exon	FALSE	canonical	1	168	junction_4	135.039586788467	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTTTTGCTTTTTT	9693	False	NA	-7	True	AATAAA	-26	NA	34109635	34094632	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34094844_34100402_34100479_34100961_34101036_34101130_34101422_34102072_34102853_34103562_34103961_34104141_34104193_34104822_34104877_34105549_34105650_34105737_34105876_34109451
transcript_24263.nnic	chr17	+	966	4	NNC	ENSMUSG00000092349.2	novel	807	3	NA	NA	-11925	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	55.6496980125579	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGTGTTCTGACTTAAAT	NA	False	NA	13	True	NA	NA	NA	34112183	34125649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_34112309_34122590_34122685_34124501_34124892_34125292
transcript_24265.nnic	chr17	+	1280	3	NNC	ENSMUSG00000092349.2	novel	807	3	NA	NA	-12333	0	at_least_one_novel_splicesite	FALSE	canonical	3	118	junction_1	2.5	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGTGTTCTGACTTAAAT	NA	False	NA	13	True	NA	NA	NA	34111775	34125649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_34112309_34124501_34124892_34125292
transcript_24267.known	chr17	+	807	3	FSM	ENSMUSG00000092349.2	ENSMUST00000172817.2	807	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	58	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGGTGTTCTGACTTAAAT	1259	False	NA	13	True	NA	NA	NA	34124108	34125649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34124169_34124501_34124892_34125292
transcript_24268.known	chr17	-	462	2	FSM	ENSMUSG00000092564.3	ENSMUST00000174467.2	462	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATATTCCCTTTTACG	1223	False	NA	-5	True	AATAAA	-23	NA	34128183	34127155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34127561_34128126
transcript_24269.known	chr17	-	430	2	FSM	ENSMUSG00000092564.3	ENSMUST00000174321.2	430	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTAGCTCTCCAATGGCTG	1115	False	NA	-117	True	NA	NA	NA	34128291	34127267	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34127561_34128154
transcript_24271.nnic	chr17	+	2509	8	NNC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	222.120210145547	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5536	False	NA	12	True	AATAAA	-23	NA	34128385	34134564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_34128468_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
transcript_24274.known	chr17	+	2581	8	FSM	ENSMUSG00000002307.17	ENSMUST00000079421.15	2581	8	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_5	66.597787546753	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5569	False	NA	12	True	AATAAA	-23	NA	34128418	34134564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34132701_34132816_34133037_34134316
transcript_24280.nic	chr17	+	2646	7	NIC	ENSMUSG00000002307.17	novel	2581	8	NA	NA	-2	0	intron_retention	FALSE	canonical	3	546	junction_5	71.9320667173009	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTCCTTTACTTTGCCT	5620	False	NA	12	True	AATAAA	-23	NA	34128469	34134564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_34128573_34129404_34129646_34130211_34131044_34131131_34131344_34131561_34131782_34132246_34133037_34134316
transcript_24282.known	chr17	+	2898	8	FSM	ENSMUSG00000024308.16	ENSMUST00000025161.10	2898	8	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_6	36.6951033823983	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGGGCCTCTCATTCTCCC	292	False	NA	13	True	AATAAA	-18	NA	34138305	34148266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145600_34145681_34147113
transcript_24284.known	chr17	+	2589	8	FSM	ENSMUSG00000024308.16	ENSMUST00000234247.2	2589	8	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_6	40.4101421902563	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCGGGCCTCTCATTCTCC	597	False	NA	12	True	AATAAA	-17	NA	34138610	34148265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34138699_34138844_34139025_34139222_34139484_34144383_34144783_34144981_34145324_34145401_34145492_34145603_34145681_34147113
transcript_24286.known	chr17	+	387	2	FSM	ENSMUSG00000051390.11	ENSMUST00000174463.2	387	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGAAAGGCATGACTTCCA	NA	False	NA	NA	False	NA	NA	NA	34134877	34136116	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34134939_34135790
transcript_24287.known	chr17	+	2612	2	FSM	ENSMUSG00000051390.11	ENSMUST00000053429.11	2612	2	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTCCCAACACCCCT	NA	False	NA	11	True	ATTAAA	-20	NA	34135144	34138299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34135248_34135790
transcript_2429.known	chr1	-	5258	10	FSM	ENSMUSG00000026393.11	ENSMUST00000186017.7	5258	10	0	0	0	0	multi-exon	TRUE	canonical	3	136	junction_1	7.19739321808962	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATCA	NA	False	NA	NA	False	NA	NA	NA	138547487	138410612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_138414849_138426313_138426428_138430308_138430404_138443362_138443471_138444265_138444375_138460474_138460586_138462101_138462165_138471940_138472082_138489440_138489524_138547289
transcript_24290.known	chr17	+	3252	18	FSM	ENSMUSG00000041354.17	ENSMUST00000047503.16	3252	18	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	23.5177912481234	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCCCCATCCTTCAGT	3234	False	NA	12	True	AATAAA	-18	NA	34148555	34156661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34149019_34149218_34149416_34150699_34150784_34151013_34151193_34151294_34151346_34151427_34151726_34151982_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
transcript_24294.nic	chr17	+	2887	17	NIC	ENSMUSG00000041354.17	novel	943	8	NA	NA	-107	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	27.6331294599435	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCCCCATCCTTCAGT	4428	False	NA	12	True	AATAAA	-18	NA	34149749	34156661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_34150045_34150699_34150784_34151013_34151193_34151294_34151346_34151427_34151726_34151982_34152235_34152324_34152429_34152514_34152600_34152685_34152755_34152870_34152946_34153948_34153982_34154107_34154230_34154333_34154430_34154518_34154631_34154713_34155008_34155836_34155952_34156038
transcript_24296.known	chr17	+	753	2	FSM	ENSMUSG00000041354.17	ENSMUST00000172468.2	753	2	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCGGTGTCTCTGGGTCCC	3195	False	NA	NA	False	ATTAAA	-21	NA	34148516	34149469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34149019_34149218
transcript_24297.known	chr17	-	481	5	FSM	ENSMUSG00000024309.16	ENSMUST00000179418.9	481	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	500.831808095293	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCCTACTTTACAGCCA	NA	False	NA	-19	True	AATAAA	-13	NA	34159284	34157896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997_34159080_34159270
transcript_24298.known	chr17	-	560	5	FSM	ENSMUSG00000024309.16	ENSMUST00000174048.8	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	444.939602642876	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTACTTTACAGCCAGTCT	NA	False	NA	-15	True	AATAAA	-17	NA	34159299	34157892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997_34159140_34159270
transcript_24300.known	chr17	-	807	4	FSM	ENSMUSG00000024309.16	ENSMUST00000025163.14	807	4	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_1	64.8194072447099	730	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGGATTCTGTTTTGCTTTC	NA	False	NA	83	True	NA	NA	NA	34159317	34157794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34158997
transcript_24301.known	chr17	-	396	4	FSM	ENSMUSG00000024309.16	ENSMUST00000174426.2	396	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	515.769974568767	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGCCAATAAAATGTAAACA	NA	False	NA	-42	True	NA	NA	NA	34159304	34157919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34158086_34158512_34158638_34158721_34158793_34159270
transcript_24302.known	chr17	-	685	3	FSM	ENSMUSG00000024309.16	ENSMUST00000173678.3	685	3	0	0	0	0	multi-exon	FALSE	canonical	3	1189	junction_1	13.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGGCCTTTCTTGCTGT	NA	False	NA	NA	False	NA	NA	NA	34159305	34158331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34158638_34158721_34158793_34158997
transcript_24305.nnic	chr17	+	2385	15	NNC	ENSMUSG00000024312.11	novel	2229	15	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_9	68.8412844808956	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCTGGACCATCCTGTA	1978	False	NA	13	True	ATTAAA	-16	NA	34159632	34168671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_34159781_34159858_34160066_34160165_34160247_34160379_34160493_34160606_34160695_34160795_34160858_34162319_34162425_34162531_34162683_34162774_34162911_34163300_34163556_34167193_34167508_34167616_34167712_34167809_34167906_34168046_34168161_34168251
transcript_24306.known	chr17	+	2229	15	FSM	ENSMUSG00000024312.11	ENSMUST00000025170.11	2229	15	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_8	25.4498305996527	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCTGGACCATCCTGTA	1979	False	NA	13	True	ATTAAA	-16	NA	34159633	34168671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34159781_34159858_34160066_34160165_34160247_34160379_34160493_34160606_34160695_34160795_34160858_34162319_34162425_34162531_34162683_34162774_34162911_34163455_34163556_34167193_34167508_34167616_34167712_34167809_34167906_34168046_34168161_34168251
transcript_24313.known	chr17	-	1580	1	FSM	ENSMUSG00000067370.5	ENSMUST00000087543.5	1580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGCAGCGTCTTCACCAG	NA	False	NA	-2	True	AATAAA	-17	NA	34170462	34168882	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34168900_34170500
transcript_24316.known	chr17	+	3383	20	FSM	ENSMUSG00000024319.19	ENSMUST00000025178.17	3383	20	0	0	0	0	multi-exon	FALSE	canonical	2	228	junction_10	32.2850016205651	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGTGATTTTGTACTGT	NA	False	NA	31	True	NA	NA	NA	34174785	34186009	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34175157_34175903_34175989_34176822_34176876_34176990_34177067_34177263_34177332_34177574_34177751_34178198_34178350_34178968_34179070_34179160_34179294_34179420_34179479_34180084_34180219_34180586_34180743_34181040_34181160_34181396_34181521_34181699_34181796_34181883_34181992_34182151_34182218_34184254_34184367_34184634_34184754_34184932
transcript_24321.known	chr17	-	715	6	FSM	ENSMUSG00000008668.16	ENSMUST00000234380.2	715	6	0	0	0	0	multi-exon	FALSE	canonical	1	30	junction_3	10301.0144238322	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34172713_34172883_34174051_34174151_34174591
transcript_24324.known	chr17	-	527	5	FSM	ENSMUSG00000008668.16	ENSMUST00000174609.9	527	5	0	0	0	0	multi-exon	FALSE	canonical	3	518	junction_2	9115.60860557319	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174637	34170972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34171093_34171194_34171268_34171376_34171566_34174051_34174151_34174591
transcript_24328.known	chr17	-	560	5	FSM	ENSMUSG00000008668.16	ENSMUST00000008812.9	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	20050	junction_4	1387.25833481007	4825	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCGTCTCAGTTTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	34174651	34170972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051_34174151_34174591
transcript_2433.known	chr1	-	565	3	FSM	ENSMUSG00000079283.3	ENSMUST00000112025.3	565	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGGTCCACAAGATGCACG	NA	False	NA	-1	True	ATTAAA	-16	NA	138784590	138779720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_138779912_138781308_138781411_138784318
transcript_24331.known	chr17	-	632	4	FSM	ENSMUSG00000008668.16	ENSMUST00000174175.8	632	4	0	0	0	0	multi-exon	FALSE	canonical	3	20050	junction_3	1274.65978031613	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCGTCTCAGTTTGTCT	NA	False	NA	NA	False	AATAAA	-18	NA	34174634	34170973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34171093_34171194_34171566_34174051_34174151_34174591
transcript_24333.known	chr17	-	974	4	FSM	ENSMUSG00000008668.16	ENSMUST00000174620.3	974	4	0	0	0	0	multi-exon	FALSE	canonical	3	21077	junction_1	1022.38979302851	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACCTCCGTCTCAGTTTGT	NA	False	NA	NA	False	AATAAA	-16	NA	34174627	34170975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34171093_34171194_34171287_34171376_34171566_34174051
transcript_24334.known	chr17	-	448	2	FSM	ENSMUSG00000008668.16	ENSMUST00000173323.2	448	2	0	0	0	0	multi-exon	FALSE	canonical	3	23355	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACCTCCGTCTCAGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	34171515	34170977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34171287_34171376
transcript_24335.nnic	chr17	-	1517	6	NIC	ENSMUSG00000067203.9	novel	1052	6	NA	NA	-23	17	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	9.338094023943	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCTGAGTCACTATGCTG	3621	False	NA	NA	False	AATAAA	-22	NA	34197824	34193615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_34194054_34194453_34194588_34194714_34194990_34196744_34197021_34197227_34197498_34197700
transcript_24337.known	chr17	-	1567	5	FSM	ENSMUSG00000067203.9	ENSMUST00000235582.2	1567	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	6.10327780786685	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGGAGAACCTTCCAGAA	3644	False	NA	NA	False	AATAAA	-5	NA	34197801	34193632	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34194054_34194470_34194588_34194714_34194990_34196844_34197498_34197700
transcript_24340.known	chr17	-	1570	8	FSM	ENSMUSG00000061232.17	ENSMUST00000172912.8	1570	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	28.0698836361489	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTATGCTGTGTGTATCTG	NA	False	NA	-4	True	AATAAA	-32	NA	34219263	34214990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34215451_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
transcript_24343.known	chr17	-	1065	8	FSM	ENSMUSG00000061232.17	ENSMUST00000238098.2	1065	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	35.1840641107155	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGACAGCTGCCTGGAGT	NA	False	NA	NA	False	NA	NA	NA	34219225	34215448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218485_34218707_34218978_34219167
transcript_24345.known	chr17	-	1619	8	FSM	ENSMUSG00000061232.17	ENSMUST00000025181.18	1619	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	28.3196045170126	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAATGATAGATGAATAAA	NA	False	NA	-40	True	NA	NA	NA	34219321	34215026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218521_34218707_34218978_34219167
transcript_24352.nic	chr17	-	1793	7	NIC	ENSMUSG00000061232.17	novel	1619	8	NA	NA	-9	0	intron_retention	FALSE	canonical	3	37	junction_6	25.5907969568923	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCAGAATCTGGGTCACT	NA	False	NA	-20	True	AATAAA	-16	NA	34219288	34215006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_34215478_34215589_34215629_34215800_34215834_34216011_34216132_34216258_34216535_34218244_34218978_34219167
transcript_24353.known	chr17	-	1550	8	FSM	ENSMUSG00000024327.17	ENSMUST00000169397.9	1550	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_7	197.419371296905	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTGAGGTGACCTGTCCT	NA	False	NA	-73	True	NA	NA	NA	34250636	34247769	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797_34250237_34250521
transcript_24355.known	chr17	-	2320	7	FSM	ENSMUSG00000024327.17	ENSMUST00000025186.16	2320	7	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_6	39.6512575112344	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTTGTCTTTATGTG	NA	False	NA	-2	True	AATAAA	-26	NA	34250594	34247242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34249797
transcript_24356.nic	chr17	-	1673	7	NIC	ENSMUSG00000024327.17	novel	1550	8	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_6	218.983763984659	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCAGCCTTTGTCTTTA	NA	False	NA	-6	True	AATAAA	-22	NA	34250675	34247246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539_34249709_34250521
transcript_24358.known	chr17	-	709	6	FSM	ENSMUSG00000073422.12	ENSMUST00000173425.9	709	6	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_4	24.8885515850159	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGTGTGGCTCAGGCAT	NA	False	NA	-83	True	NA	NA	NA	34246485	34245088	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34245200_34245369_34245445_34245636_34245680_34245824_34245910_34245989_34246076_34246176
transcript_2436.known	chr1	-	11586	17	FSM	ENSMUSG00000026361.10	ENSMUST00000018337.9	11586	17	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_10	26.4054178862975	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGTTGCAGAGGGCTC	NA	False	NA	-3	True	NA	NA	NA	143578631	143474537	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_143484296_143485107_143485250_143491040_143491142_143493016_143493179_143503239_143503328_143503583_143503620_143510769_143510828_143543362_143543428_143545727_143545807_143547067_143547167_143553376_143553594_143561660_143561750_143567012_143567066_143567151_143567215_143571130_143571201_143574954_143575061_143578231
transcript_24361.known	chr17	-	2433	6	FSM	ENSMUSG00000024327.17	ENSMUST00000170491.8	2433	6	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_4	31.8282893036996	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGCAGCCTTTGTCTTTA	NA	False	NA	-6	True	AATAAA	-22	NA	34250622	34247246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34248043_34248483_34248681_34248819_34248958_34249063_34249229_34249341_34249396_34249539
transcript_24362.known	chr17	-	534	2	FSM	ENSMUSG00000073422.12	ENSMUST00000173616.8	534	2	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCCGGTTCTTCTTGTGTC	NA	False	NA	-1	True	AATAAA	-23	NA	34245732	34245006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34245445_34245636
transcript_24363.known	chr17	+	2627	10	FSM	ENSMUSG00000039656.18	ENSMUST00000044858.16	2627	10	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_7	51.2967642711639	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCATTTTCTGGACTGAG	NA	False	NA	19	True	CATAAA	-19	NA	34250785	34257371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34251198_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255834_34255939_34256140_34256247_34256357
transcript_24364.known	chr17	+	2577	10	FSM	ENSMUSG00000039656.18	ENSMUST00000174299.9	2577	10	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_7	37.5838157971825	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTTTCTGGACTGAGAT	NA	False	NA	21	True	CATAAA	-21	NA	34250825	34257373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34251198_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255846_34255939_34256140_34256247_34256357
transcript_24365.known	chr17	+	2502	10	FSM	ENSMUSG00000039656.18	ENSMUST00000173354.9	2502	10	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	72.5503656472905	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAGCCATTTTCTGGACTG	NA	False	NA	17	True	CATAAA	-17	NA	34251169	34257369	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34251459_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255834_34255939_34256140_34256247_34256357
transcript_24366.known	chr17	+	2283	10	FSM	ENSMUSG00000039656.18	ENSMUST00000116612.3	2283	10	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	64.8690989609074	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATAGCCATTTTCTGGAC	NA	False	NA	15	True	CATAAA	-15	NA	34251374	34257367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34251459_34251800_34252019_34252528_34252686_34252995_34253176_34254627_34254801_34255298_34255429_34255598_34255732_34255846_34255939_34256140_34256247_34256357
transcript_24369.known	chr17	+	1088	5	FSM	ENSMUSG00000024334.10	ENSMUST00000025192.8	1088	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	7.14142842854285	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCGTGTGTCCTTTTCACG	3765	False	NA	NA	False	ACTAAA	-16	NA	34311313	34314208	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34311503_34312806_34313056_34313281_34313564_34313656_34313793_34313976
transcript_24371.known	chr17	+	1108	5	FSM	ENSMUSG00000037649.11	ENSMUST00000236322.2	1108	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	3.83242742918897	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTACTAGACAAGTGTCTA	6798	False	NA	28	True	AATAAA	-36	NA	34354601	34358074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34354733_34356087_34356373_34356876_34357156_34357380_34357510_34357790
transcript_24373.known	chr17	+	1404	6	FSM	ENSMUSG00000079547.5	ENSMUST00000114232.4	1404	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	6.61513416341649	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAAGTTTGTCCTGGGTTT	NA	False	NA	NA	False	AATAAA	-21	NA	34372045	34379204	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34372428_34374406_34374689_34376219_34376505_34378317_34378435_34378602_34378639_34378902
transcript_24374.known	chr17	+	2953	11	FSM	ENSMUSG00000037321.18	ENSMUST00000170086.8	2953	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	3.91024295920343	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCTCCCGTTTCTTAGCT	6991	False	NA	NA	False	AATAAA	-20	NA	34406526	34416199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34407380_34408151_34408267_34408403_34408535_34409536_34409743_34410302_34410501_34411810_34411940_34412101_34412291_34412458_34412633_34412854_34413018_34413817_34413955_34415541
transcript_24375.known	chr17	-	1352	6	FSM	ENSMUSG00000096727.4	ENSMUST00000174576.4	1352	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.70944739819828	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTCAAAGTCTGCGAGACT	9780	False	NA	NA	False	NA	NA	NA	34406738	34400960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34401326_34402062_34402205_34402588_34402719_34403255_34403388_34404703_34404772_34406223
transcript_24376.known	chr17	+	1212	6	FSM	ENSMUSG00000073421.7	ENSMUST00000040828.7	1212	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	17.3735431043872	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCTTTGATAATTGCTG	NA	False	NA	12	True	NA	NA	NA	34482182	34488393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34482380_34483734_34484008_34486309_34486592_34486896_34487008_34487434_34487459_34488068
transcript_24377.known	chr17	-	1128	5	FSM	ENSMUSG00000036594.16	ENSMUST00000040655.14	1128	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	1.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTTTGGTTTTTCTTGT	NA	False	NA	NA	False	AATAAA	-28	NA	34506797	34501717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34501998_34502128_34502304_34502548_34502831_34503261_34503511_34506655
transcript_24380.known	chr17	+	1171	6	FSM	ENSMUSG00000060586.12	ENSMUST00000074557.11	1171	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	76.3910989579283	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTTCATAGAGTTTCA	NA	False	NA	12	True	AATAAA	-16	NA	34524990	34535173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34525022_34528564_34528835_34533143_34533426_34533889_34534128_34534529_34534554_34534847
transcript_24381.known	chr17	+	1669	6	FSM	ENSMUSG00000060586.12	ENSMUST00000235530.2	1669	6	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_2	11.7064085013295	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATTGTCAATTAGAGTAT	NA	False	NA	NA	False	AATAAA	-16	NA	34524840	34535648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34525022_34528564_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
transcript_24382.known	chr17	+	1082	6	FSM	ENSMUSG00000060586.12	ENSMUST00000236232.2	1082	6	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	73.665731517443	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTTCATAGAGTTTCA	NA	False	NA	12	True	AATAAA	-16	NA	34524899	34535173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34525022_34528617_34528835_34533143_34533426_34534016_34534128_34534529_34534554_34534847
transcript_24388.known	chr17	+	1990	9	FSM	ENSMUSG00000034673.15	ENSMUST00000173328.8	1990	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10.5289778706197	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGGTTTTGGGTGTGTGTGG	NA	False	NA	-34	True	AATATA	-13	NA	34810239	34815581	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34810467_34812545_34812620_34812840_34813089_34813211_34813403_34813555_34813692_34813774_34813929_34814238_34814328_34814601_34814689_34814797
transcript_24389.known	chr17	+	1343	4	FSM	ENSMUSG00000034786.18	ENSMUST00000038244.15	1343	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	3.29983164553722	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGACTGGTATCTGGGG	NA	False	NA	5	True	AATAAA	-18	NA	34808779	34810728	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34809235_34809434_34809538_34809715_34809916_34810143
transcript_24392.known	chr17	-	1238	6	FSM	ENSMUSG00000015478.14	ENSMUST00000015622.8	1238	6	0	0	0	0	multi-exon	FALSE	canonical	3	1022	junction_5	40.2124358874217	803	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTCCCCAGTCTCTCCC	795	False	NA	-23	True	NA	NA	NA	34822664	34820064	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34820641_34820714_34820833_34820907_34820963_34821058_34821172_34821264_34821284_34822307
transcript_24399.known	chr17	-	850	4	FSM	ENSMUSG00000015478.14	ENSMUST00000174475.8	850	4	0	0	0	0	multi-exon	FALSE	canonical	3	1022	junction_3	37.7211994624891	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAATCCTTTGCTTTCCC	1109	False	NA	NA	False	NA	NA	NA	34822350	34820287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34820963_34821058_34821172_34821264_34821284_34822307
transcript_24400.known	chr17	-	763	3	FSM	ENSMUSG00000015478.14	ENSMUST00000174045.2	763	3	0	0	0	0	multi-exon	FALSE	canonical	3	1022	junction_2	33	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCGTGTTCAATGCCCATG	824	False	NA	NA	False	NA	NA	NA	34822635	34820755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34821172_34821264_34821284_34822307
transcript_24401.known	chr17	-	1729	9	FSM	ENSMUSG00000015474.17	ENSMUST00000064953.15	1729	9	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_8	20.0249843945008	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGGCTTGGCTTATTCCC	3988	False	NA	-1	True	AATAAA	-16	NA	34846351	34835636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846220
transcript_24402.known	chr17	-	1710	9	FSM	ENSMUSG00000015474.17	ENSMUST00000171121.9	1710	9	0	0	0	0	multi-exon	TRUE	canonical	3	52	junction_2	7.8700381193486	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGCTTGGCTTATTCCCA	3930	False	NA	0	True	AATAAA	-17	NA	34846409	34835635	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846298
transcript_24403.known	chr17	-	1139	9	FSM	ENSMUSG00000015474.17	ENSMUST00000166040.9	1139	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_8	20.3312413541328	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCCCCACCAGGGCTCCCC	3326	False	NA	NA	False	NA	NA	NA	34847013	34836202	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_34836462_34836637_34836693_34841824_34841910_34842004_34842089_34844610_34844719_34844809_34844906_34845432_34845587_34845778_34845970_34846906
transcript_24404.known	chr17	+	1105	7	FSM	ENSMUSG00000034254.18	ENSMUST00000173973.8	1105	7	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	44.7688507781917	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCTTCTTCCTCCCTGTA	NA	False	NA	NA	False	NA	NA	NA	34824834	34831417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34825146_34829418_34829619_34829845_34829901_34830247_34830424_34830578_34830675_34830764_34830841_34831226
transcript_24405.known	chr17	+	2190	7	FSM	ENSMUSG00000034254.18	ENSMUST00000037489.15	2190	7	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	5.07991688470939	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTTGATATCCATATCTT	NA	False	NA	44	True	AATAAA	-44	NA	34824834	34832423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34825146_34829418_34829619_34829845_34829980_34830247_34830424_34830578_34830675_34830764_34830841_34831226
transcript_24412.known	chr17	+	1270	2	FSM	ENSMUSG00000033739.9	ENSMUST00000036720.9	1270	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAACTGTGGTCTGTGTTGTG	7359	False	NA	4	True	ATTAAA	-17	NA	34863737	34865298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34863928_34864218
transcript_24413.known	chr17	+	257	2	FSM	ENSMUSG00000033739.9	ENSMUST00000174796.2	257	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAACGCCCAGCAAATCTT	7436	False	NA	NA	False	AATGAA	-35	NA	34863814	34864296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34863928_34864152
transcript_24416.known	chr17	+	2566	18	FSM	ENSMUSG00000015461.16	ENSMUST00000015605.15	2566	18	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_9	22.8588265568706	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCGGCCACCTTCCTAGTG	9741	False	NA	11	True	AATAAA	-24	NA	34866119	34874048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34866291_34866633_34866714_34867192_34867272_34867550_34867643_34868091_34868228_34869274_34869361_34869473_34869610_34869693_34869826_34869959_34870094_34870535_34870722_34870803_34870896_34871621_34871802_34871962_34872071_34872187_34872270_34872475_34872547_34872677_34872790_34872894_34872980_34873444
transcript_24419.known	chr17	+	2315	18	FSM	ENSMUSG00000015461.16	ENSMUST00000173984.2	2315	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	91.9084469989445	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCCCCGAGGGTACCTC	9806	False	NA	NA	False	AATATA	-31	NA	34866184	34873853	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_34866300_34866633_34866714_34867192_34867272_34867550_34867643_34868091_34868228_34869274_34869361_34869473_34869610_34869693_34869826_34869959_34870094_34870535_34870722_34870803_34870896_34871621_34871802_34871962_34872071_34872187_34872270_34872475_34872547_34872677_34872790_34872894_34872980_34873444
transcript_24422.known	chr17	-	1120	7	FSM	ENSMUSG00000061207.12	ENSMUST00000077477.12	1120	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	4.59770474137791	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTCTGTGTCCTTTGT	5573	False	NA	-4	True	AATAAA	-16	NA	35055921	35042968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35043301_35043489_35043638_35043726_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
transcript_24423.nic	chr17	-	1152	6	NIC	ENSMUSG00000061207.12	novel	1120	7	NA	NA	-21	0	intron_retention	FALSE	canonical	3	81	junction_1	3.61109401705356	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTCTGTGTCCTTTGT	5630	False	NA	-4	True	AATAAA	-16	NA	35055864	35042968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_35043301_35043489_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
transcript_24424.nic	chr17	-	1354	6	NIC	ENSMUSG00000061207.12	novel	1120	7	NA	NA	-45	0	intron_retention	FALSE	canonical	3	82	junction_5	4.14728827066554	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTCTGTGTCCTTTGT	5528	False	NA	-4	True	AATAAA	-16	NA	35055966	35042968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_35043638_35043726_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
transcript_24425.nic	chr17	-	1015	6	NIC	ENSMUSG00000061207.12	novel	1120	7	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	31.928670501604	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTCTTTCTGTGTCCTTT	5528	False	NA	-6	True	AATAAA	-14	NA	35055966	35042970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_35043301_35043726_35043825_35050988_35051129_35051421_35051518_35055405_35055543_35055752
transcript_24426.known	chr17	-	805	5	FSM	ENSMUSG00000061207.12	ENSMUST00000161885.8	805	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	37.4457941563535	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTCTTTCTGTGTCCTTTG	5651	False	NA	-5	True	AATAAA	-15	NA	35055843	35042969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35043301_35043489_35043638_35043726_35043825_35055405_35055543_35055752
transcript_24428.known	chr17	-	3951	28	FSM	ENSMUSG00000040356.17	ENSMUST00000046022.16	3951	28	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_20	16.8071446039882	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTTGGAGTATGGTAACT	5305	False	NA	-23	True	AATAAA	-13	NA	35069186	35058219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35058582_35058666_35058808_35058972_35059192_35059271_35059383_35059485_35059697_35059833_35059961_35060043_35060195_35060417_35060523_35060646_35060785_35060919_35061058_35061787_35062019_35063313_35063425_35063590_35063804_35063979_35064077_35064143_35064291_35064624_35064732_35064803_35064889_35065002_35065150_35065497_35065644_35065842_35065972_35066118_35066301_35066383_35066438_35066722_35066798_35066879_35066995_35067083_35067202_35067300_35067411_35068871_35068976_35069109
transcript_2443.known	chr1	+	580	4	FSM	ENSMUSG00000018196.19	ENSMUST00000111957.10	580	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	245.711664806989	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCGATTGGCCAGTTTT	NA	False	NA	31	True	AATAAA	-18	NA	143615352	143622514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_143615423_143617385_143617450_143620784_143620962_143622245
transcript_24430.known	chr17	+	1519	7	FSM	ENSMUSG00000040482.17	ENSMUST00000046244.15	1519	7	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	48.3439643480847	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAAGCACTCTGGTTTGC	2976	False	NA	77	True	NA	NA	NA	35055994	35058209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35056218_35056368_35056731_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
transcript_24435.known	chr17	+	1447	7	FSM	ENSMUSG00000040482.17	ENSMUST00000180043.8	1447	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	19.7434940057619	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTGCTGTGTCTGAATG	2976	False	NA	30	True	AATAAA	-19	NA	35055994	35058162	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35056193_35056368_35056731_35056876_35057113_35057201_35057422_35057523_35057660_35057788_35057884_35057962
transcript_24437.known	chr17	+	1381	11	FSM	ENSMUSG00000024369.17	ENSMUST00000165953.3	1381	11	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	101.735146335964	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTATTGTAACTGCTTT	4	True	NA	NA	False	AAAAAG	-13	NA	35069383	35075348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35069439_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
transcript_2444.known	chr1	+	3337	4	FSM	ENSMUSG00000018196.19	ENSMUST00000185362.7	3337	4	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_1	59.84981202978	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAAATCCTTATCGTCAG	NA	False	NA	NA	False	NA	NA	NA	143615294	143625139	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_143615497_143617385_143617450_143620784_143620962_143622245
transcript_24440.known	chr17	+	1399	11	FSM	ENSMUSG00000024369.17	ENSMUST00000173357.8	1399	11	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_1	84.0802592764794	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCTCCGTCAGCCTCTAG	-6	True	NA	30	True	AGTAAA	-20	NA	35069373	35075230	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35069565_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
transcript_24444.known	chr17	+	1607	11	FSM	ENSMUSG00000024369.17	ENSMUST00000097343.11	1607	11	0	0	0	0	multi-exon	TRUE	canonical	3	52	junction_1	144.013228559046	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTTGTTATTGTAACTGC	32	False	NA	NA	False	AAAAAG	-10	NA	35069366	35075345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35069651_35069886_35069970_35071319_35071390_35071491_35071638_35072400_35072476_35072588_35072627_35072783_35073110_35073196_35073342_35073420_35073476_35073671_35073775_35075063
transcript_24450.known	chr17	-	2641	18	FSM	ENSMUSG00000024371.15	ENSMUST00000025230.15	2641	18	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_13	3.65842630716852	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTCTGTCTTATGTCTT	NA	False	NA	0	True	AATAAA	-18	NA	35101076	35081580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35082008_35082154_35082205_35082320_35082451_35082599_35082692_35082838_35082916_35083020_35083187_35083283_35083402_35083487_35083583_35083704_35083846_35085493_35085584_35091342_35091484_35092437_35092577_35094863_35094998_35095129_35095232_35095309_35095487_35098857_35099044_35100547_35100773_35100925
transcript_24452.known	chr17	-	535	4	FSM	ENSMUSG00000024371.15	ENSMUST00000174279.2	535	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	0.942809041582063	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAATGGCTGGGTGTTGA	4773	False	NA	NA	False	AATAAA	-9	NA	35117241	35112328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35112451_35112586_35112677_35114382_35114544_35117079
transcript_24455.nic	chr17	+	1023	5	ISM	ENSMUSG00000013787.16	ENSMUST00000013931.12	4026	27	12235	4	231	0	3prime_fragment	FALSE	canonical	3	414	junction_3	11.4972822875669	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTGTCTGGTGATTGTT	1752	False	NA	15	True	AATAAA	-16	NA	35130181	35133023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_35130455_35130554_35130642_35131364_35131444_35131609_35131786_35132615
transcript_24459.known	chr17	+	2246	18	FSM	ENSMUSG00000007034.16	ENSMUST00000169230.2	2246	18	0	0	0	0	multi-exon	FALSE	non_canonical	1	4	junction_1	7.17888098382546	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAATACCCAGTAAGAAA	120	False	NA	NA	False	ATTAAA	-21	NA	35136694	35149412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35136853_35137214_35137315_35137395_35137519_35137820_35137882_35140040_35140132_35140207_35140292_35140503_35140740_35140837_35140938_35142403_35142497_35142723_35142827_35146649_35146901_35146993_35147089_35147181_35147286_35147395_35147470_35147610_35147682_35147783_35147879_35147954_35148040_35149090
transcript_24460.known	chr17	+	2261	21	FSM	ENSMUSG00000007034.16	ENSMUST00000007249.15	2261	21	0	0	0	0	multi-exon	TRUE	non_canonical	1	2	junction_1	7.56240702422185	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTATGGCTTTATTTT	1279	False	NA	NA	False	ATTAAA	-23	NA	35133445	35149332	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35133497_35135622_35135672_35136293_35136368_35136492_35136572_35137214_35137315_35137395_35137519_35137820_35137882_35140040_35140132_35140207_35140292_35140503_35140740_35140837_35140938_35142403_35142497_35142723_35142827_35146649_35146901_35146993_35147089_35147181_35147286_35147395_35147470_35147610_35147682_35147783_35147879_35147954_35148040_35149090
transcript_24462.known	chr17	+	2474	6	FSM	ENSMUSG00000007038.6	ENSMUST00000007253.6	2474	6	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	26.914680009244	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	7923	False	NA	NA	False	NA	NA	NA	35150228	35154897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35150524_35150891_35151085_35151541_35151805_35152978_35153162_35153258_35153482_35153580
transcript_24463.known	chr17	+	3619	5	FSM	ENSMUSG00000007038.6	ENSMUST00000173269.2	3619	5	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_3	25.7001945517928	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGATTCGGGCTGCGTTC	7984	False	NA	NA	False	NA	NA	NA	35150289	35154929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35150524_35150891_35151085_35151541_35153162_35153258_35153482_35153580
transcript_24466.known	chr17	-	579	5	FSM	ENSMUSG00000092203.8	ENSMUST00000172501.8	579	5	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_4	37.0497975702972	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTAAATAGACTTTTTCT	6010	False	NA	NA	False	AATAAA	-14	NA	35171444	35169218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111_35171150_35171327
transcript_24467.nnic	chr17	-	545	4	NIC	ENSMUSG00000092203.8	novel	579	5	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_3	76.6072233321811	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6008	False	NA	NA	False	AATAAA	-16	NA	35171446	35169216	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_35169452_35169673_35169824_35170860_35170902_35171327
transcript_24468.nic	chr17	-	797	4	NIC	ENSMUSG00000092203.8	novel	579	5	NA	NA	-3	0	intron_retention	FALSE	canonical	3	94	junction_3	41.9947086613963	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6004	False	NA	NA	False	AATAAA	-16	NA	35171450	35169216	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_35169452_35169673_35169824_35170860_35171150_35171327
transcript_24469.known	chr17	-	520	4	FSM	ENSMUSG00000092203.8	ENSMUST00000174714.8	520	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	75.5439533575579	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6030	False	NA	NA	False	AATAAA	-16	NA	35171424	35169216	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35169452_35169673_35169824_35171111_35171150_35171327
transcript_24472.known	chr17	-	434	4	FSM	ENSMUSG00000092203.8	ENSMUST00000173070.8	434	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	32.4995726467629	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6007	False	NA	NA	False	AATAAA	-16	NA	35171447	35169216	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35169452_35170860_35170902_35171111_35171150_35171327
transcript_24475.known	chr17	-	635	3	FSM	ENSMUSG00000092203.8	ENSMUST00000174173.2	635	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_2	10.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACAGGCTGTCCTGTCTGGG	6010	False	NA	NA	False	NA	NA	NA	35171444	35170421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35170902_35171111_35171150_35171327
transcript_24476.known	chr17	-	691	2	FSM	ENSMUSG00000092203.8	ENSMUST00000172531.2	691	2	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGCCTTTAAGTTCTGTA	6016	False	NA	NA	False	NA	NA	NA	35171438	35170569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35171150_35171327
transcript_24477.known	chr17	-	934	3	FSM	ENSMUSG00000092203.8	ENSMUST00000174039.8	934	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	40	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTAAATAGACTTTTTCTG	6044	False	NA	NA	False	AATAAA	-15	NA	35171410	35169217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35169452_35169673_35169824_35170860
transcript_24478.known	chr17	-	747	4	FSM	ENSMUSG00000092203.8	ENSMUST00000173811.8	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	36.5908306668336	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAATAGACTTTTTCTGT	6022	False	NA	NA	False	AATAAA	-16	NA	35171432	35169216	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35169452_35169673_35169824_35170860_35170902_35171111
transcript_24479.known	chr17	-	2803	1	FSM	ENSMUSG00000090877.4	ENSMUST00000172753.2	2803	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATATTTTGTCTGTTTG	8771	False	NA	NA	False	AATAAA	-8	NA	35178214	35175411	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35175400_35178200
transcript_2448.nic	chr1	+	1492	12	NIC	ENSMUSG00000018189.13	novel	1696	11	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	124	junction_10	455.061706831934	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCCATTCTTCAATTC	NA	False	NA	25	True	NA	NA	NA	143652999	143682679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675658_143675773_143677872_143677972_143678665_143678816_143682421
transcript_24481.known	chr17	+	873	5	FSM	ENSMUSG00000007050.18	ENSMUST00000007266.14	873	5	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_1	596.250995806296	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	243	False	NA	26	True	AATAAA	-20	NA	35201104	35204867	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35201344_35201595_35201664_35204084_35204116_35204224_35204285_35204392
transcript_24482.known	chr17	+	653	5	FSM	ENSMUSG00000007050.18	ENSMUST00000172777.8	653	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	713.006442818015	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGGATGGAAAGATCTG	273	False	NA	-31	True	AATACA	-2	NA	35201134	35204810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35201211_35201595_35201664_35204084_35204116_35204224_35204285_35204392
transcript_24483.known	chr17	+	521	4	FSM	ENSMUSG00000007050.18	ENSMUST00000174241.8	521	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	766.950237412224	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAACTGAATGGATGAGAGA	25	False	NA	NA	False	NA	NA	NA	35200886	35204647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35201062_35204084_35204116_35204224_35204285_35204392
transcript_24484.known	chr17	+	840	5	FSM	ENSMUSG00000007050.18	ENSMUST00000114011.11	840	5	0	0	0	0	multi-exon	FALSE	canonical	3	1192	junction_1	217.150869213089	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGGTTTGTCGTCTGCT	-6	True	NA	26	True	AATAAA	-20	NA	35200855	35204867	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35201062_35201595_35201664_35204084_35204116_35204224_35204285_35204392
transcript_24485.known	chr17	+	687	5	FSM	ENSMUSG00000007050.18	ENSMUST00000172890.8	687	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	715.149285114653	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCCTGGTTTGTCGTCTG	273	False	NA	24	True	AATAAA	-18	NA	35201134	35204865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35201211_35201616_35201664_35204084_35204116_35204224_35204285_35204392
transcript_24486.known	chr17	+	4137	30	FSM	ENSMUSG00000007029.17	ENSMUST00000087315.14	4137	30	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	417.564149877336	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATTCGCTCTTGTCTGTG	9474	False	NA	10	True	AATAAA	-11	NA	35219962	35235298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35220209_35220387_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230301_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569_35234896_35235162
transcript_24487.nic	chr17	+	4013	29	ISM	ENSMUSG00000007029.17	ENSMUST00000087315.14	4137	30	303	0	-27	0	3prime_fragment	FALSE	canonical	0	0	junction_11	424.60875598987	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATTCGCTCTTGTCTGTG	9777	False	NA	10	True	AATAAA	-11	NA	35220265	35235298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_35220807_35223180_35223316_35223412_35223552_35223747_35223870_35223952_35224038_35224225_35224327_35224450_35224579_35229481_35229647_35229813_35229896_35230180_35230301_35230382_35230492_35230575_35230671_35230783_35230875_35231064_35231190_35231272_35231377_35231465_35231625_35231705_35231797_35231905_35232012_35232097_35232169_35232240_35232367_35232618_35232724_35232803_35232873_35233001_35233081_35233209_35233338_35233597_35233754_35233912_35234120_35234340_35234453_35234569_35234896_35235162
transcript_24489.nic	chr17	-	675	5	NIC	ENSMUSG00000036185.10	novel	665	5	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_4	14.8218588577816	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246904	35244934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_35245124_35245313_35245434_35245669_35245763_35246419_35246561_35246772
transcript_24490.known	chr17	-	665	5	FSM	ENSMUSG00000036185.10	ENSMUST00000174037.8	665	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	14.8218588577816	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246890	35244934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35245124_35245313_35245434_35245669_35245763_35246419_35246565_35246772
transcript_24491.known	chr17	-	618	4	FSM	ENSMUSG00000036185.10	ENSMUST00000173211.8	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	4.54606056566195	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTGGTTTGGCTCCTGT	NA	False	NA	NA	False	AATAAA	-35	NA	35246635	35244934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35245124_35245313_35245434_35245669_35245763_35246419
transcript_24494.nnic	chr17	-	554	4	NIC	ENSMUSG00000036185.10	novel	935	4	NA	NA	-14	-1	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	17.8200885394982	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTTGGTTTGGCTCCTG	NA	False	NA	NA	False	AATAAA	-34	NA	35246904	35244935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_35245124_35245669_35245763_35246419_35246561_35246772
transcript_24496.known	chr17	-	651	4	FSM	ENSMUSG00000036185.10	ENSMUST00000174117.2	651	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	16.4181471413663	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGGGGCTCCAGGCTGAGA	NA	False	NA	NA	False	NA	NA	NA	35246992	35245240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35245434_35245669_35245763_35246419_35246565_35246772
transcript_24500.nic	chr17	-	800	3	ISM	ENSMUSG00000036185.10	ENSMUST00000040151.9	935	4	347	0	-10	0	3prime_fragment	FALSE	canonical	3	47	junction_2	5.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGC	NA	False	NA	NA	False	AATAAA	-17	NA	35246645	35244952	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_35245434_35245669_35245763_35246419
transcript_24502.nic	chr17	-	1067	11	ISM	ENSMUSG00000007035.16	ENSMUST00000097338.11	2678	25	-24	10541	-5	0	5prime_fragment	FALSE	canonical	2	3	junction_1	3.52278299076171	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGACAGCTTATTTTATT	1765	False	NA	NA	False	NA	NA	NA	35265726	35258121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_35258316_35260445_35260492_35261073_35261157_35262704_35262741_35263000_35263111_35263292_35263415_35264089_35264153_35264269_35264351_35264905_35265030_35265206_35265364_35265675
transcript_24506.known	chr17	+	1466	6	FSM	ENSMUSG00000007041.10	ENSMUST00000007257.10	1466	6	0	0	0	0	multi-exon	TRUE	canonical	3	1084	junction_1	70.1524055182714	681	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGCTTAAAGTGTAGTGG	1676	False	NA	NA	False	AATAAA	-41	NA	35268941	35277725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35269463_35271410_35271521_35271756_35271883_35272008_35272116_35274202_35274385_35277305
transcript_24511.known	chr17	+	1254	7	FSM	ENSMUSG00000007039.13	ENSMUST00000174493.8	1254	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_6	164.014989152415	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTGTGACTGGTTTCTCG	NA	False	NA	17	True	AATAAA	-23	NA	35278076	35281071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280576_35280766
transcript_24512.known	chr17	+	1342	7	FSM	ENSMUSG00000007039.13	ENSMUST00000007255.13	1342	7	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_1	36.6488593122472	857	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGGGCTGTGACTGGTTT	NA	False	NA	13	True	AATAAA	-19	NA	35278010	35281067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
transcript_24514.nnic	chr17	+	1319	7	NNC	ENSMUSG00000007039.13	novel	1342	7	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	162.253659434849	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGGGCTGTGACTGGTTT	NA	False	NA	13	True	AATAAA	-19	NA	35277984	35281067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_35278249_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280500_35280602_35280766
transcript_2452.nic	chr1	+	1493	12	NIC	ENSMUSG00000018189.13	novel	1845	11	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	124	junction_10	458.199927492049	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTCCATTCTTCAATTC	NA	False	NA	25	True	NA	NA	NA	143652995	143682679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143678665_143678816_143682421
transcript_24524.nic	chr17	+	1598	7	NIC	ENSMUSG00000007039.13	novel	682	4	NA	NA	-345	0	combination_of_known_junctions	FALSE	canonical	3	59	junction_1	154.377693408802	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAGGGCTGTGACTGGTTT	NA	False	NA	13	True	AATAAA	-19	NA	35278446	35281067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_35278941_35279078_35279438_35279578_35279679_35279808_35279883_35279980_35280101_35280451_35280602_35280766
transcript_24530.known	chr17	+	962	3	FSM	ENSMUSG00000092586.9	ENSMUST00000173478.2	962	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTTGTGTTTATTGTTAGA	NA	False	NA	NA	False	AATAAA	-17	NA	35286300	35289026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35286421_35287842_35287954_35288295
transcript_24532.nic	chr17	+	1062	4	NIC	ENSMUSG00000013766.12	novel	1142	3	NA	NA	-60	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	215.629826838084	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGAGAGCTGTCTGTG	NA	False	NA	20	True	NA	NA	NA	35295817	35297780	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_35295936_35296110_35296183_35296812_35296939_35297034
transcript_24534.known	chr17	+	750	4	FSM	ENSMUSG00000013766.12	ENSMUST00000172678.8	750	4	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_1	129.208702837266	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAAAGGGACAGAAGTGTC	NA	False	NA	NA	False	NA	NA	NA	35295906	35297526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35295967_35296110_35296183_35296812_35296939_35297034
transcript_24538.known	chr17	+	1142	3	FSM	ENSMUSG00000013766.12	ENSMUST00000013910.5	1142	3	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	34.5	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTAAGAGAGCTGTCTGTG	NA	False	NA	20	True	NA	NA	NA	35295912	35297780	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35296183_35296812_35296939_35297034
transcript_24541.nnic	chr17	-	631	3	NNC	ENSMUSG00000073413.10	novel	546	3	NA	NA	826	95	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	7	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGAAATGTTCGTTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	35296206	35290323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_35290736_35293150_35293289_35296125
transcript_24542.known	chr17	-	690	3	FSM	ENSMUSG00000073413.10	ENSMUST00000172639.8	690	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	7	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGTAAGAAGACAAACACT	NA	False	NA	NA	False	NA	NA	NA	35297041	35290452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35290736_35293150_35293289_35296772
transcript_24544.known	chr17	+	1945	20	FSM	ENSMUSG00000007036.16	ENSMUST00000007251.14	1945	20	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	22.1293102285439	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCTGCTTATGAGATGT	NA	False	NA	32	True	AATAAA	-19	NA	35308266	35321963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35308433_35309344_35309402_35309997_35310065_35310546_35310634_35313226_35313313_35315279_35315354_35315457_35315581_35317669_35317785_35317874_35317977_35319310_35319375_35319614_35319665_35319937_35320062_35320217_35320323_35320517_35320582_35320803_35320861_35320945_35321009_35321121_35321199_35321273_35321373_35321450_35321498_35321645
transcript_24546.known	chr17	+	509	3	FSM	ENSMUSG00000034482.3	ENSMUST00000037849.3	509	3	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	2.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGGATTTCCATCTGAG	6711	False	NA	NA	False	NA	NA	NA	35327254	35330967	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35327397_35329642_35329808_35330765
transcript_24548.known	chr17	-	917	7	FSM	ENSMUSG00000024387.14	ENSMUST00000173114.8	917	7	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_6	341.027369380621	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCTCCTACTGTGTGT	NA	False	NA	-7	True	AATAAA	-17	NA	35340405	35335171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340286
transcript_24552.nic	chr17	+	1518	3	NIC	ENSMUSG00000092417.4	novel	1518	3	NA	NA	-220	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	24	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGTTTACTTTCTTGAA	4341	False	NA	14	True	AATAAA	-14	NA	35340210	35343790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_35340527_35342028_35342636_35343195
transcript_24553.known	chr17	+	1518	3	FSM	ENSMUSG00000092417.4	ENSMUST00000165306.3	1518	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	21.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTGTTTACTTTCTTGAA	4589	False	NA	14	True	AATAAA	-14	NA	35340458	35343790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35340775_35342028_35342636_35343195
transcript_24554.known	chr17	+	2142	3	FSM	ENSMUSG00000043311.8	ENSMUST00000061859.7	2142	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTTCCACTCAGTGTCCT	2180	False	NA	23	True	AATAAA	-40	NA	35345361	35347831	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35345427_35345618_35345762_35345897
transcript_24555.known	chr17	-	961	7	FSM	ENSMUSG00000024387.14	ENSMUST00000025246.13	961	7	0	0	0	0	multi-exon	FALSE	canonical	3	826	junction_1	47.9780042195264	1065	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGTCTCCTACTGTGT	NA	False	NA	-9	True	AATAAA	-15	NA	35340262	35335173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35335402_35336671_35336862_35336971_35337048_35337434_35337551_35338729_35338833_35339420_35339504_35340097
transcript_24556.known	chr17	-	1013	6	FSM	ENSMUSG00000024391.8	ENSMUST00000025249.7	1013	6	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	5.65685424949238	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGGGTTTTGTCTGCA	NA	False	NA	NA	False	AATAAA	-20	NA	35351026	35347972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35348112_35349055_35349155_35349383_35349483_35349814_35349895_35350170_35350326_35350585
transcript_24560.known	chr17	+	3858	25	FSM	ENSMUSG00000024392.18	ENSMUST00000025250.14	3858	25	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_11	162.018431736091	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGAGTACCTTTTCTTTA	8488	False	NA	32	True	AATAAA	-33	NA	35354153	35366298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35354448_35355090_35355212_35357347_35357466_35357561_35357759_35357998_35358053_35358210_35358286_35359208_35359466_35359797_35359928_35360401_35360600_35360805_35361059_35361282_35361361_35361702_35361816_35361898_35361987_35362308_35362659_35363126_35363419_35363574_35363745_35363921_35363976_35364112_35364216_35364304_35364430_35364581_35364729_35364837_35364898_35365001_35365146_35365221_35365330_35365732_35365880_35366116
transcript_24568.known	chr17	-	6888	31	FSM	ENSMUSG00000024393.15	ENSMUST00000025253.12	6888	31	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_20	122.598119434553	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGGGAAAGTCATGGGTGG	NA	False	NA	-1	True	AATAAA	-21	NA	35383873	35368051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35368378_35368485_35368577_35368675_35368771_35368884_35369098_35369203_35369303_35369473_35369685_35369792_35369882_35371593_35371762_35372027_35372100_35372200_35372342_35372482_35372717_35372897_35372984_35373083_35373214_35373441_35373573_35373767_35374037_35374341_35376184_35376323_35376535_35376854_35377156_35377368_35377560_35377911_35378390_35378755_35378967_35379072_35379164_35379427_35379571_35379728_35379809_35380003_35380156_35380309_35380454_35380617_35380691_35380785_35380886_35381177_35381356_35381847_35382023_35383710
transcript_24569.known	chr17	-	415	4	FSM	ENSMUSG00000073412.7	ENSMUST00000097336.5	415	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.24721912892465	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGGCTTCTCTATATGTGT	NA	False	NA	NA	False	AGTAAA	-22	NA	35407415	35404070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35404287_35405560_35405581_35405921_35406018_35407332
transcript_24571.nnic	chr17	+	1131	3	NNC	ENSMUSG00000024399.6	novel	1160	3	NA	NA	-7548	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCGGCCCTTGCCAGTGT	5183	False	NA	NA	False	AATAAA	-12	NA	35405866	35415278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_35406083_35414025_35414342_35414679
transcript_24572.known	chr17	-	1447	4	FSM	ENSMUSG00000042419.9	ENSMUST00000048994.7	1447	4	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	9.89949493661167	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGAGTCTCCTCTGTTT	NA	False	NA	-1	True	NA	NA	NA	35454768	35439150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35439953_35440112_35440335_35453927_35454208_35454625
transcript_24573.nnic	chr17	-	1472	4	NNC	ENSMUSG00000042419.9	novel	1447	4	NA	NA	-735	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_3	32.4995726467629	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGAGTCTCCTCTGTTT	NA	False	NA	-1	True	NA	NA	NA	35455503	35439150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_35439953_35440112_35440335_35453927_35454208_35455335
transcript_24578.known	chr17	+	1739	11	FSM	ENSMUSG00000019432.16	ENSMUST00000068056.12	1739	11	0	0	0	0	multi-exon	FALSE	canonical	3	2129	junction_1	149.184985839729	2888	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTCTGTTCATGGCTTGA	NA	False	NA	37	True	AATGAA	-26	NA	35460721	35472683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35460829_35462088_35462427_35463111_35463240_35463431_35463525_35465912_35466097_35467926_35468046_35470222_35470355_35471722_35471833_35471939_35472085_35472182_35472331_35472448
transcript_24597.known	chr17	+	2102	8	FSM	ENSMUSG00000073411.13	ENSMUST00000172785.8	2102	8	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	6.54341856605645	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTCACTATGCTGTGT	1719	False	NA	26	True	AATAAA	-25	NA	35481705	35486475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35482163_35482354_35482625_35482814_35483091_35484759_35485036_35485162_35485280_35485457_35485491_35485663_35485703_35485841
transcript_2460.known	chr1	+	1696	11	FSM	ENSMUSG00000018189.13	ENSMUST00000189936.7	1696	11	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_8	216.947090323885	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTGGATTATTTGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	143653009	143683043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675658_143675773_143677872_143677972_143682421
transcript_24600.nic	chr17	+	1729	7	ISM	ENSMUSG00000073411.13	ENSMUST00000172785.8	2102	8	366	146	0	0	intron_retention	FALSE	canonical	3	37	junction_3	6.9860973050449	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTTGAAAGTGACCTTGA	2085	False	NA	NA	False	NA	NA	NA	35482071	35486329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_35482163_35482354_35482625_35482814_35483091_35484759_35485036_35485162_35485280_35485457_35485491_35485663
transcript_24604.known	chr17	+	1744	7	FSM	ENSMUSG00000073411.13	ENSMUST00000172503.3	1744	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	18.315900802915	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTTGAAAGTGACCTTGA	2085	False	NA	NA	False	NA	NA	NA	35482071	35486329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35482163_35482354_35482625_35482814_35483091_35484759_35485036_35485162_35485280_35485442_35485491_35485663
transcript_24611.known	chr17	+	2085	6	FSM	ENSMUSG00000073409.13	ENSMUST00000174699.8	2085	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.489897948556636	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTTAGCTCCGTTTCT	NA	False	NA	NA	False	NA	NA	NA	35643825	35649031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35643917_35644083_35644354_35644546_35644823_35646839_35647116_35647242_35647359_35647975
transcript_24612.known	chr17	+	4209	3	FSM	ENSMUSG00000060550.17	ENSMUST00000173788.2	4209	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATCTGTGTCACTGAGCT	8350	False	NA	NA	False	AATAAA	-25	NA	35658182	35662745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35658261_35658427_35658698_35658884
transcript_24613.known	chr17	+	1134	5	FSM	ENSMUSG00000060550.17	ENSMUST00000116598.10	1134	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	0.707106781186548	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCACTGAGCTGTGT	8298	False	NA	NA	False	AATAAA	-29	NA	35658130	35662749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35658261_35658427_35658698_35658884_35659161_35661942_35661976_35662324
transcript_24614.known	chr17	+	1473	7	FSM	ENSMUSG00000067235.15	ENSMUST00000068291.7	1473	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	3.16227766016838	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGTGTCAGTATGCTGT	NA	False	NA	NA	False	AATAAA	-23	NA	35780985	35785460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35781077_35781272_35781543_35781722_35781999_35783979_35784256_35784382_35784487_35784664_35784698_35785037
transcript_24615.nnic	chr17	+	1432	6	NIC	ENSMUSG00000067235.15	novel	1473	7	NA	NA	0	4	combination_of_known_splicesites	FALSE	canonical	2	2	junction_2	2.93938769133981	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCCAGAGTCTGTGTCAG	NA	False	NA	NA	False	AATAAA	-15	NA	35780985	35785452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_35781077_35781272_35781543_35781722_35781999_35783979_35784256_35784382_35784487_35785037
transcript_24617.nnic	chr17	+	904	4	NIC	ENSMUSG00000067235.15	novel	1473	7	NA	NA	-18	4	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	3.29983164553722	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCCAGAGTCTGTGTCAG	NA	False	NA	NA	False	AATAAA	-15	NA	35780967	35785452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_35781077_35783979_35784256_35784382_35784487_35785037
transcript_24621.known	chr17	+	1362	5	FSM	ENSMUSG00000024406.17	ENSMUST00000025271.17	1362	5	0	0	0	0	multi-exon	FALSE	canonical	3	3795	junction_3	232.519354033164	8619	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGAATTTTGTTTTCCT	3036	False	NA	0	True	AATAAA	-20	NA	35816914	35821669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35817381_35819999_35820121_35820304_35820436_35820877_35821037_35821184
transcript_24623.known	chr17	-	1665	4	FSM	ENSMUSG00000050410.16	ENSMUST00000161012.8	1665	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	21.6846079563875	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCGTTGAATCTAAGTCT	9333	False	NA	-5	True	AATAAA	-20	NA	35827721	35823630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35824082_35825370_35825918_35826774_35827328_35827607
transcript_24624.nic	chr17	-	1622	4	NIC	ENSMUSG00000050410.16	novel	1665	4	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_3	19.7989898732233	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTGCGTTGAATCTAAG	9325	False	NA	-8	True	AATAAA	-17	NA	35827729	35823633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_35824082_35825370_35825918_35826774_35827328_35827655
transcript_24625.known	chr17	-	1732	4	FSM	ENSMUSG00000050410.16	ENSMUST00000160885.2	1732	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	32.9983164553722	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTGCGTTGAATCTAAG	9372	False	NA	-8	True	AATAAA	-17	NA	35827682	35823633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35824082_35825370_35825918_35826774_35827437_35827607
transcript_24627.nnic	chr17	+	2642	18	NNC	ENSMUSG00000040312.15	novel	2656	18	NA	NA	-95	0	at_least_one_novel_splicesite	TRUE	canonical	3	25	junction_1	28.0148255362583	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTTTGAGAGACTGCGA	4337	False	NA	20	True	AATAAA	-22	NA	35827901	35841902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_35828009_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
transcript_24629.known	chr17	+	2656	18	FSM	ENSMUSG00000040312.15	ENSMUST00000164242.9	2656	18	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	24.5503507751598	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCTGGAGATGTTTGAG	4432	False	NA	11	True	AATAAA	-13	NA	35827996	35841893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35828127_35829113_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
transcript_24632.nnic	chr17	+	2626	18	NNC	ENSMUSG00000040312.15	novel	2748	19	NA	NA	29	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	31.1318215242649	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTTTGAGAGACTGCGA	4537	False	NA	20	True	AATAAA	-22	NA	35828101	35841902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_35828127_35829047_35829181_35829275_35829490_35831771_35832076_35835342_35835507_35835595_35835732_35835873_35835985_35836156_35836307_35837276_35837388_35837505_35837613_35838965_35839079_35839238_35839285_35839436_35839586_35839674_35839864_35839941_35840044_35841044_35841197_35841340_35841456_35841597
transcript_24639.nnic	chr17	+	1088	3	NNC	ENSMUSG00000024409.9	novel	843	2	NA	NA	-496	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGTCTGCTTTTTTTACC	1716	False	NA	4	True	AATAAA	-20	NA	35843601	35845544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_35843825_35844075_35844192_35844795
transcript_2464.known	chr1	+	1845	11	FSM	ENSMUSG00000018189.13	ENSMUST00000018333.13	1845	11	0	0	0	0	multi-exon	FALSE	canonical	3	576	junction_8	227.497274708951	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTTTGTTACCTAATTC	NA	False	NA	NA	False	ATTAAA	-13	NA	143653018	143683204	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_143653215_143659703_143659768_143661867_143661974_143670014_143670141_143670220_143670283_143670417_143670549_143672499_143672564_143674128_143674232_143675661_143675773_143677872_143677972_143682421
transcript_24640.known	chr17	+	843	2	FSM	ENSMUSG00000024409.9	ENSMUST00000025273.9	843	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTAGTCTGCTTTTTTTACC	2212	False	NA	4	True	AATAAA	-20	NA	35844097	35845544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_35844192_35844795
transcript_24641.known	chr17	-	4425	29	FSM	ENSMUSG00000038838.16	ENSMUST00000043674.15	4425	29	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	44.4260449442414	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGGTCTCGTGAAGCGT	1761	False	NA	NA	False	AATAAA	-37	NA	35978484	35966525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35967545_35967627_35967751_35967841_35968018_35968098_35968211_35969023_35969231_35969918_35970072_35970153_35970282_35970366_35970446_35970543_35970613_35970691_35970797_35970893_35971020_35971105_35971177_35971295_35971402_35971615_35971692_35971767_35971845_35972466_35972549_35972793_35972898_35972994_35973123_35973895_35973987_35974353_35974443_35974962_35975075_35975387_35975508_35975662_35975745_35976677_35976776_35976864_35976932_35977022_35977145_35977546_35977648_35977735_35977818_35977964
transcript_24647.known	chr17	-	1679	14	FSM	ENSMUSG00000001524.15	ENSMUST00000001565.15	1679	14	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_8	17.8418429806661	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGCGGCTTCAGACGTCTG	NA	False	NA	-1	True	AATAAA	-17	NA	35984631	35978621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35978895_35979319_35979399_35979501_35979550_35980200_35980332_35980520_35980654_35980839_35980924_35981081_35981151_35981256_35981369_35981548_35981638_35981757_35981855_35982117_35982250_35982884_35982990_35983577_35983721_35984447
transcript_24650.known	chr17	-	331	3	FSM	ENSMUSG00000001524.15	ENSMUST00000159852.2	331	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	96.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGAGCAGCCGCTACC	NA	False	NA	NA	False	NA	NA	NA	35984551	35982946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35982990_35983577_35983721_35984406
transcript_24651.known	chr17	-	620	3	FSM	ENSMUSG00000001524.15	ENSMUST00000159671.8	620	3	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_2	12	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAAAGGGGAAAAAGCCGC	NA	False	NA	NA	False	NA	NA	NA	35984573	35982638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_35982990_35983577_35983721_35984447
transcript_24652.known	chr17	+	1131	2	FSM	ENSMUSG00000003541.7	ENSMUST00000003635.7	1131	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTCGAAGTGTATCATTC	NA	False	NA	16	True	AATAAA	-29	NA	36132575	36133815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_36132821_36132929
transcript_24654.known	chr17	+	1825	13	FSM	ENSMUSG00000059714.14	ENSMUST00000001569.15	1825	13	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_8	11.7434970184448	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATACTTCTTTCCTCACT	NA	False	NA	25	True	ATTAAA	-23	NA	36134121	36143683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_36134394_36134698_36134756_36135018_36135095_36135170_36135262_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36140917_36141010_36141057_36141545_36141684_36141834_36142000_36143398
transcript_24656.nic	chr17	+	1635	13	NIC	ENSMUSG00000059714.14	novel	651	8	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	54.6198986939131	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATACTTCTTTCCTCACT	NA	False	NA	25	True	ATTAAA	-23	NA	36134405	36143683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_36134488_36134698_36134756_36135018_36135095_36135170_36135262_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36140917_36141010_36141057_36141545_36141684_36141834_36142000_36143398
transcript_24657.nic	chr17	+	1658	13	NIC	ENSMUSG00000059714.14	novel	697	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	55.160120457527	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATACTTCTTTCCTCACT	NA	False	NA	25	True	ATTAAA	-23	NA	36134417	36143683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_36134523_36134698_36134756_36135018_36135095_36135170_36135262_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36140917_36141010_36141057_36141545_36141684_36141834_36142000_36143398
transcript_24659.nic	chr17	+	1635	12	NIC	ENSMUSG00000059714.14	novel	1825	13	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	49.9444319318153	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATACTTCTTTCCTCACT	NA	False	NA	25	True	ATTAAA	-23	NA	36134220	36143683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_36134394_36134698_36134756_36135018_36135095_36135457_36135602_36135724_36135845_36136322_36136419_36136629_36136783_36140734_36140917_36141010_36141057_36141545_36141684_36141834_36142000_36143398
transcript_24667.known	chr17	-	762	3	FSM	ENSMUSG00000001525.11	ENSMUST00000134978.3	762	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4366.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGGAGGCACTGGCTCTG	NA	False	NA	NA	False	NA	NA	NA	36149100	36146792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36146932_36147054_36147466_36148888
transcript_24668.known	chr17	-	2649	4	FSM	ENSMUSG00000001525.11	ENSMUST00000001566.10	2649	4	0	0	0	0	multi-exon	FALSE	canonical	3	8733	junction_1	667.796376150695	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGTGAGGCTGTGTGCTC	NA	False	NA	-7	True	AATAAA	-16	NA	36149198	36144812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36146932_36147054_36147166_36147519_36147629_36148888
transcript_24671.nnic	chr17	+	1031	4	NNC	ENSMUSG00000061607.16	novel	422	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	66.2872536767062	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTCCTGCAGTGAATTA	9389	False	NA	15	True	NA	NA	NA	36152566	36170562	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_36152658_36155323_36155463_36156730_36156789_36169819
transcript_24672.known	chr17	+	1466	4	FSM	ENSMUSG00000059791.15	ENSMUST00000074259.15	1466	4	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	13.2748718344933	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACTTGTCTGTCCATGAC	4589	False	NA	24	True	AATAAA	-18	NA	36172209	36176294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_36172410_36174330_36174528_36175003_36175181_36175402
transcript_24676.known	chr17	+	302	3	FSM	ENSMUSG00000059791.15	ENSMUST00000172931.2	302	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	132.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGCTGCTGACTGTGCT	4757	False	NA	NA	False	NA	NA	NA	36172377	36175495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_36172410_36175003_36175181_36175402
transcript_24677.known	chr17	+	333	2	FSM	ENSMUSG00000059791.15	ENSMUST00000174873.2	333	2	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTTCTCTTTACCCTCTA	4609	False	NA	NA	False	NA	NA	NA	36172229	36175555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_36172410_36175402
transcript_24678.known	chr17	+	1395	3	FSM	ENSMUSG00000034595.18	ENSMUST00000190496.2	1395	3	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGCTGCCTTCCTTTGTT	NA	False	NA	13	True	AATAAA	-20	NA	36179294	36186486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_36179678_36184617_36184832_36185688
transcript_24679.known	chr17	+	2743	4	FSM	ENSMUSG00000034595.18	ENSMUST00000122899.8	2743	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	29.4089933334837	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGCCTTCCTTTGTTTC	9327	False	NA	15	True	AATAAA	-22	NA	36176947	36186488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_36177121_36178121_36179678_36184617_36184832_36185688
transcript_24680.known	chr17	+	3351	20	FSM	ENSMUSG00000024422.15	ENSMUST00000025292.15	3351	20	0	0	0	0	multi-exon	TRUE	canonical	3	278	junction_2	372.558080768229	693	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTTATGTCATTGCTT	NA	False	NA	52	True	AATGAA	-42	NA	36190710	36203562	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_36191011_36192169_36192415_36192521_36192688_36192913_36192971_36193333_36193589_36193736_36193941_36194024_36194217_36194706_36194818_36194911_36195028_36196386_36196598_36196775_36196875_36196981_36197135_36198290_36198432_36198726_36198890_36198975_36199095_36199246_36199315_36200089_36200253_36200330_36200493_36201806_36201981_36203310
transcript_24683.known	chr17	-	1452	13	FSM	ENSMUSG00000024426.18	ENSMUST00000061052.12	1452	13	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_5	27.2308801424657	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACTTGTCATTATTCAAA	NA	False	NA	2	True	AATAAA	-38	NA	36220967	36208486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
transcript_24685.known	chr17	-	1340	12	FSM	ENSMUSG00000024426.18	ENSMUST00000077494.13	1340	12	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_5	34.4359508470988	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTACCGACAAAAAGTGACT	NA	False	NA	-12	True	AATAAA	-24	NA	36220938	36208500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36208808_36209148_36209192_36209279_36209360_36212259_36212504_36212874_36212947_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
transcript_24686.known	chr17	-	1388	12	FSM	ENSMUSG00000024426.18	ENSMUST00000149277.8	1388	12	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	38.3140567174602	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGCTACCGACAAAAAGTG	NA	False	NA	-15	True	AATAAA	-21	NA	36220949	36208503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36208808_36209148_36209243_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
transcript_24690.known	chr17	-	2034	11	FSM	ENSMUSG00000024426.18	ENSMUST00000141662.8	2034	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	41.2200194080498	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTTCGTTTGTGCTTCA	NA	False	NA	NA	False	AAAACA	-11	NA	36220937	36210708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36211765_36212259_36212504_36212874_36212947_36214999_36215069_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
transcript_24691.known	chr17	-	1930	10	FSM	ENSMUSG00000024426.18	ENSMUST00000056034.13	1930	10	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	48.3477628524786	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTGACATTTTCAGCGAA	NA	False	NA	NA	False	AATAAA	-24	NA	36220937	36210743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36211765_36212259_36212504_36212874_36212947_36215181_36215228_36219454_36219557_36219744_36219859_36219979_36220041_36220150_36220243_36220322_36220384_36220820
transcript_24697.known	chr17	-	1079	7	FSM	ENSMUSG00000024436.17	ENSMUST00000025305.16	1079	7	0	0	0	0	multi-exon	FALSE	canonical	3	1264	junction_4	57.4071714451542	1329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTCCCTTTGGGCTGT	4296	False	NA	-6	True	AATAAA	-21	NA	36227281	36221270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36221849_36222310_36222371_36223229_36223297_36225225_36225295_36225383_36225482_36225587_36225697_36227183
transcript_24704.known	chr17	-	1193	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148482.8	1193	6	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_5	123.227269709265	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	False	NA	-3	True	AATAAA	-19	NA	36208012	36203568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36207871
transcript_24705.nic	chr17	-	1139	6	NIC	ENSMUSG00000050705.16	novel	1193	6	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_5	147.212227752996	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	False	NA	-3	True	AATAAA	-19	NA	36208023	36203568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36207936
transcript_24706.known	chr17	-	1293	6	FSM	ENSMUSG00000050705.16	ENSMUST00000148721.8	1293	6	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_5	90.4765162901402	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGGTTTTCACGTCACTT	NA	False	NA	-3	True	AATAAA	-19	NA	36208323	36203568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36203859_36203931_36204002_36205810_36206012_36206175_36206265_36206562_36206965_36208082
transcript_24710.known	chr17	-	488	6	FSM	ENSMUSG00000024436.17	ENSMUST00000174349.8	488	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	528.957313967772	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACCTTGGTACCCATGGT	4348	False	NA	NA	False	NA	NA	NA	36227229	36221742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36221849_36222310_36222371_36225225_36225295_36225383_36225482_36225587_36225697_36227183
transcript_24714.known	chr17	-	803	4	FSM	ENSMUSG00000024436.17	ENSMUST00000113782.10	803	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	650.773044582791	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTCCCTTTGGGCTGT	4296	False	NA	-6	True	AATAAA	-21	NA	36227281	36221270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36221849_36222310_36222371_36223229_36223297_36227183
transcript_24716.known	chr17	+	1385	2	FSM	ENSMUSG00000039220.17	ENSMUST00000133641.2	1385	2	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTTAGGGCAAAAATCAT	NA	False	NA	NA	False	AATAAA	-16	NA	36227673	36229250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_36227898_36228089
transcript_24718.known	chr17	-	3161	23	FSM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	0	0	0	0	multi-exon	FALSE	canonical	3	801	junction_12	70.1887066803097	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGTGCCTGTGGGGTGCT	NA	False	NA	-12	True	AATAAA	-18	NA	36280653	36267710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36268482_36268570_36268644_36268733_36268799_36268964_36269134_36269216_36269250_36269960_36270032_36270120_36270196_36270327_36270613_36270759_36270885_36271005_36271090_36271472_36271622_36271706_36271847_36271934_36272122_36272592_36272716_36272877_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
transcript_24729.nic	chr17	-	824	9	ISM	ENSMUSG00000038762.16	ENSMUST00000043757.15	3161	23	-38	5192	-38	-310	5prime_fragment	FALSE	canonical	3	825	junction_3	70.9954884129971	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAAGAAAAAGCTAAAGA	NA	False	NA	NA	False	NA	NA	NA	36280691	36272902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_36272977_36274017_36274129_36274212_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
transcript_24731.nic	chr17	-	908	8	NIC	ENSMUSG00000038762.16	novel	3161	23	NA	NA	-38	-310	intron_retention	FALSE	canonical	3	825	junction_2	69.2499171148108	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAAGAAAAAGCTAAAGA	NA	False	NA	NA	False	NA	NA	NA	36280691	36272902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_36272977_36274017_36274285_36274460_36274572_36274649_36274688_36274808_36274939_36275145_36275233_36275968_36276016_36280537
transcript_24737.known	chr17	+	2848	12	FSM	ENSMUSG00000024429.10	ENSMUST00000087200.4	2848	12	0	0	0	0	multi-exon	FALSE	canonical	3	575	junction_1	37.9601792225955	210	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGCAGAGCGGCTCTTTAA	NA	False	NA	NA	False	NA	NA	NA	36290742	36300354	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_36291140_36291508_36291675_36291953_36292091_36292198_36292351_36292449_36292522_36293416_36293625_36293838_36293935_36294286_36294482_36298356_36298536_36298616_36298780_36299004_36299146_36299412
transcript_2474.known	chr1	+	478	2	FSM	ENSMUSG00000018189.13	ENSMUST00000185742.2	478	2	0	0	0	0	multi-exon	FALSE	canonical	3	1337	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTCCAGCCCTCAGCACA	NA	False	NA	NA	False	NA	NA	NA	143653013	143659980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_143653215_143659703
transcript_24742.nic	chr17	-	2062	5	NIC	ENSMUSG00000038500.16	novel	2727	4	NA	NA	26	0	intron_retention	FALSE	canonical	3	88	junction_4	22.0056810846654	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	False	NA	-1	True	AATAAA	-16	NA	36290392	36283432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602_36289674_36290018
transcript_24744.known	chr17	-	1878	4	FSM	ENSMUSG00000038500.16	ENSMUST00000172429.8	1878	4	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	20.5101600838869	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	False	NA	-1	True	AATAAA	-16	NA	36289863	36283432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36284696_36285414_36285706_36289272_36289336_36289602
transcript_24745.known	chr17	-	2727	4	FSM	ENSMUSG00000038500.16	ENSMUST00000055454.14	2727	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	38.4216374224502	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTCTCTCATTTCTCTG	NA	False	NA	-1	True	AATAAA	-16	NA	36291128	36283432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36284696_36285414_36285706_36289272_36289336_36290018
transcript_24748.known	chr17	+	1111	2	FSM	ENSMUSG00000092368.2	ENSMUST00000173900.2	1111	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCCTATCTCTATTAGTC	NA	False	NA	NA	False	AATAAA	-45	NA	36305344	36349327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_36305453_36348324
transcript_24749.known	chr17	-	1761	9	FSM	ENSMUSG00000056116.19	ENSMUST00000080015.12	1761	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.82915619758885	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGTGTCTTAAATCTATTT	NA	False	NA	NA	False	ATTAAA	-21	NA	36353597	36349300	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36349669_36349876_36349947_36350068_36350116_36350233_36350267_36351116_36351222_36351369_36351646_36352340_36352578_36352759_36353021_36353233
transcript_2475.known	chr1	+	135	1	FSM	ENSMUSG00000088323.3	ENSMUST00000157698.3	135	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAAAAGAAAATTAGCAG	NA	False	NA	NA	False	NA	NA	NA	143654665	143654800	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_143654700_143654800
transcript_24751.known	chr17	-	1105	6	FSM	ENSMUSG00000073406.11	ENSMUST00000195838.6	1105	6	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	180.752427369593	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587_36394825_36395051
transcript_24752.known	chr17	-	995	6	FSM	ENSMUSG00000073406.11	ENSMUST00000192532.2	995	6	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_4	160.992670640623	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAAGGGATCATCTGCAT	NA	False	NA	NA	False	NA	NA	NA	36395085	36391193	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394124_36394401_36394587_36394858_36395051
transcript_24758.known	chr17	-	829	5	FSM	ENSMUSG00000073406.11	ENSMUST00000195833.6	829	5	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	176.893329438959	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394825_36395051
transcript_24759.known	chr17	-	862	5	FSM	ENSMUSG00000073406.11	ENSMUST00000194244.6	862	5	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_3	129.95191418367	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGGTTGATTAGTGGAG	NA	False	NA	-79	True	NA	NA	NA	36395115	36391080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36391216_36391890_36392008_36392133_36392410_36394587_36394858_36395051
transcript_2476.known	chr1	-	2856	18	FSM	ENSMUSG00000056220.15	ENSMUST00000070200.15	2856	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.05882352941176	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTCTTTTCTGTCATT	3932	False	NA	NA	False	AATAAA	-30	NA	149837041	149705368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_149705944_149716368_149716527_149717914_149718111_149727017_149727203_149733195_149733436_149736805_149736878_149740661_149740755_149740866_149741005_149747151_149747267_149748288_149748512_149755740_149755878_149761897_149762040_149763357_149763396_149776850_149776965_149778044_149778194_149797805_149797888_149808408_149808508_149836941
transcript_24765.known	chr17	-	729	5	FSM	ENSMUSG00000024446.14	ENSMUST00000025319.7	729	5	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_3	61.4262769505038	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTGGTATCTCAACT	NA	False	NA	-16	True	AATAAA	-20	NA	36568961	36566558	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568497_36568599_36568674
transcript_24768.known	chr17	-	437	4	FSM	ENSMUSG00000024446.14	ENSMUST00000077535.5	437	4	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	333.755399456948	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATCATCTTCCTCTGTA	NA	False	NA	6	True	AATAAA	-42	NA	36568748	36566536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568674
transcript_24769.nic	chr17	-	616	4	NIC	ENSMUSG00000024446.14	novel	729	5	NA	NA	-25	0	intron_retention	FALSE	canonical	3	710	junction_3	28.7672653471886	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTGTTCTGTGGTATC	NA	False	NA	-22	True	AATAAA	-14	NA	36568773	36566564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_36566691_36566835_36566962_36568333_36568599_36568674
transcript_2477.known	chr1	+	7480	51	FSM	ENSMUSG00000006005.19	ENSMUST00000119161.9	7480	51	0	0	0	0	multi-exon	TRUE	canonical	3	414	junction_6	73.7537117710017	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTTTTCTTCATTTCA	NA	False	NA	25	True	AATAAA	-24	NA	150269000	150325686	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_150269410_150270949_150271055_150274350_150274425_150278005_150278103_150279348_150279453_150279625_150279791_150282212_150282306_150283079_150283161_150283240_150283329_150284494_150284636_150284953_150285046_150285730_150285929_150287651_150287760_150288641_150288869_150289394_150289559_150290166_150290301_150290416_150290566_150291819_150291983_150293132_150293268_150293698_150293840_150295588_150295755_150297386_150297554_150298278_150298432_150298807_150298925_150299236_150299441_150299547_150299733_150300413_150300562_150301387_150301526_150302613_150302746_150303870_150304002_150305085_150305297_150306311_150306456_150306912_150307100_150308161_150308368_150308569_150308632_150309428_150309638_150311393_150311667_150312468_150312618_150313153_150313238_150314832_150315028_150315817_150315950_150316189_150316281_150317809_150317995_150318934_150319004_150319085_150319181_150320118_150320226_150321618_150321715_150321835_150321993_150323262_150323382_150324893_150324990_150325482
transcript_24772.known	chr17	-	579	4	FSM	ENSMUSG00000024446.14	ENSMUST00000173486.8	579	4	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_3	70.7153920067383	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTGGTATCTCAACT	NA	False	NA	-16	True	AATAAA	-20	NA	36568735	36566558	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36566691_36566835_36566962_36568333_36568417_36568497
transcript_24773.known	chr17	-	3204	7	FSM	ENSMUSG00000045409.17	ENSMUST00000113706.10	3204	7	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	8.81286937760152	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTGAGTTGCGTGGTA	NA	False	NA	-8	True	NA	NA	NA	36582459	36569764	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36571814_36572382_36572499_36573001_36573025_36574620_36574852_36578016_36578113_36579500_36579959_36582228
transcript_24776.known	chr17	-	1465	5	FSM	ENSMUSG00000045409.17	ENSMUST00000113704.10	1465	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	19.421315609402	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTCATTGTGTTTGTCAT	NA	False	NA	0	True	ATTAAA	-20	NA	36582275	36573496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_36574130_36574620_36574852_36578016_36578113_36579500_36579959_36582228
transcript_24778.known	chr17	+	3187	10	FSM	ENSMUSG00000024457.17	ENSMUST00000130367.8	3187	10	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_1	52.5084355362939	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATCTGGTGCTGTCTCTT	NA	False	NA	31	True	AATAAA	-38	NA	37148034	37170290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_37148157_37148388_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37165175_37165194_37167093_37167117_37167547_37167664_37167880_37167914_37168291
transcript_24781.known	chr17	+	3198	10	FSM	ENSMUSG00000024457.17	ENSMUST00000053434.15	3198	10	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_5	42.9366458349457	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCAGAAATTTCAAGACAGT	NA	False	NA	13	True	AATAAA	-20	NA	37148037	37170272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_37148157_37148356_37148465_37161547_37162021_37162118_37162215_37163354_37163586_37165175_37165194_37167093_37167117_37167547_37167664_37167880_37167914_37168291
transcript_24783.nic	chr17	+	2570	9	NIC	ENSMUSG00000024457.17	novel	3187	10	NA	NA	-1	-526	intron_retention	FALSE	canonical	3	29	junction_1	72.8807887923834	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTTGTGAAGGAAGTTTT	NA	False	NA	7	True	AATAAA	-17	NA	37148031	37169746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_37148157_37161547_37162021_37162118_37162215_37163354_37163586_37165175_37165194_37167093_37167117_37167547_37167664_37167880_37167914_37168291
transcript_24785.nic	chr17	+	458	2	ISM	ENSMUSG00000024457.17	ENSMUST00000134325.8	4338	5	39	18162	-4	14	5prime_fragment	FALSE	canonical	3	108	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAGAAAAGAAATGTATG	NA	False	NA	NA	False	NA	NA	NA	37148071	37148761	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_37148157_37148388
transcript_24786.known	chr17	+	522	2	FSM	ENSMUSG00000024457.17	ENSMUST00000124307.2	522	2	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	37148025	37148747	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_37148157_37148356
transcript_24787.known	chr17	-	1843	7	FSM	ENSMUSG00000050747.15	ENSMUST00000025329.13	1843	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCTTTGTGTTTTGTGTC	7466	False	NA	NA	False	AATAAA	-14	NA	37178079	37171582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_37172475_37173218_37173252_37173674_37173791_37175140_37175164_37175852_37176084_37177196_37177293_37177627
transcript_24788.known	chr17	+	2245	7	FSM	ENSMUSG00000073400.7	ENSMUST00000060524.11	2245	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATCTTCTTTGTTCTACCA	4751	False	NA	NA	False	AATAAA	-20	NA	37180465	37188725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_37181200_37182564_37182661_37183230_37183462_37184164_37184188_37185057_37185174_37186321_37186355_37187713
transcript_24789.known	chr17	-	520	4	FSM	ENSMUSG00000036398.14	ENSMUST00000174711.8	520	4	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	334.250737554243	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATTGCCTCCGTTCTCCT	NA	False	NA	-15	True	AATATA	-23	NA	37262633	37260181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_37260447_37260768_37260878_37262314_37262401_37262573
transcript_24790.known	chr17	-	1599	3	FSM	ENSMUSG00000036398.14	ENSMUST00000040402.14	1599	3	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_2	5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAGTGTGTTAAATACAGGC	NA	False	NA	NA	False	AATAAA	-15	NA	37262605	37259247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_37260447_37260768_37260878_37262314
transcript_24793.known	chr17	-	584	5	FSM	ENSMUSG00000036315.14	ENSMUST00000174466.2	584	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_4	268.393833759272	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTACCATGCTTTGTTCTC	NA	False	NA	-98	True	NA	NA	NA	37269451	37265334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040_37269122_37269269
transcript_24798.known	chr17	-	710	5	FSM	ENSMUSG00000036315.14	ENSMUST00000172518.8	710	5	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_4	61.4532342517463	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGATGTTATGTGTG	NA	False	NA	-13	True	ACTAAA	-15	NA	37269425	37265249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040_37269189_37269269
transcript_24799.known	chr17	-	742	4	FSM	ENSMUSG00000036315.14	ENSMUST00000113669.9	742	4	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_1	61.9157133170212	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGATGTTATGTGTGTT	NA	False	NA	-11	True	ACTAAA	-17	NA	37269374	37265247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_37265445_37268457_37268568_37268723_37268825_37269040
transcript_248.known	chr1	+	2049	14	FSM	ENSMUSG00000033793.13	ENSMUST00000044369.13	2049	14	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_7	59.3277926628703	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGGTGATGATGAGAAGT	NA	False	NA	98	True	AATAAA	-37	NA	5153302	5232752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5171292_5171347_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
transcript_24800.known	chr17	+	976	3	FSM	ENSMUSG00000036214.15	ENSMUST00000040177.7	976	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	121.5	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTTTGCTAATGGTACC	NA	False	NA	17	True	AATAAA	-17	NA	37269483	37276514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_37269595_37275248_37275325_37275725
transcript_24801.known	chr17	+	1020	3	FSM	ENSMUSG00000036214.15	ENSMUST00000173814.2	1020	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	112	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCTTTGCTAATGGTACC	NA	False	NA	17	True	AATAAA	-17	NA	37269532	37276514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_37269688_37275248_37275325_37275725
transcript_24802.known	chr17	+	652	3	FSM	ENSMUSG00000036214.15	ENSMUST00000172672.8	652	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	106.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGCAAAAGCAGAGTCGTA	NA	False	NA	NA	False	NA	NA	NA	37269510	37275833	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_37269979_37275248_37275325_37275725
transcript_24803.nnic	chr17	-	2568	9	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	280	1844	multi-exon	FALSE	canonical	3	31	junction_1	80.2090043261977	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTGGGTATTGATTGTG	NA	False	NA	-1	True	NA	NA	NA	37299657	37278242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr17_-_37279193_37279355_37279529_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37281891_37298307_37298416_37298546_37298823_37299396
transcript_24806.nnic	chr17	-	1705	8	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	280	1087	multi-exon	FALSE	canonical	3	13	junction_5	79.6415438712992	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTGGATTCTATTATTT	NA	False	NA	NA	False	NA	NA	NA	37299657	37278999	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr17_-_37279193_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37281958_37298307_37298416_37298546_37298823_37299396
transcript_24807.nnic	chr17	-	1753	8	Fusion	ENSMUSG00000024459.19_ENSMUSG00000083534.2	novel	1034	5	NA	NA	280	1087	multi-exon	FALSE	canonical	3	28	junction_5	76.1799695136592	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTGGATTCTATTATTT	NA	False	NA	NA	False	NA	NA	NA	37299657	37278999	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr17_-_37279193_37280098_37280210_37280331_37280614_37281212_37281462_37281732_37282006_37298307_37298416_37298546_37298823_37299396
transcript_24820.known	chr17	-	865	4	FSM	ENSMUSG00000064308.11	ENSMUST00000039846.12	865	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	4.49691252107735	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATAAAATTTTGTGTGTTT	NA	False	NA	-20	True	ATTAAA	-29	NA	37292129	37288592	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_37288999_37289360_37289439_37289542_37289826_37292031
transcript_2483.known	chr1	-	3273	14	FSM	ENSMUSG00000006010.15	ENSMUST00000111913.9	3273	14	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_9	14.7515920312223	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTGGAATTTTAAAATAGGA	633	False	NA	NA	False	AATAAA	-21	NA	150268831	150237055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268440
transcript_24831.known	chr17	+	1749	5	FSM	ENSMUSG00000036036.16	ENSMUST00000069250.14	1749	5	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_1	1286.78268852981	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTCTTTGTATTTGTT	NA	False	NA	36	True	AATAAA	-41	NA	37313416	37321524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_37313670_37314177_37314208_37315688_37315796_37316941_37317087_37320310
transcript_24833.known	chr17	+	425	5	FSM	ENSMUSG00000036036.16	ENSMUST00000172527.8	425	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1405.88868691657	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGCTCAGATCTGCAAGAT	NA	False	NA	NA	False	AAGAAA	-11	NA	37313373	37320334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_37313493_37314177_37314208_37315688_37315796_37316941_37317087_37320310
transcript_24838.known	chr17	+	762	4	FSM	ENSMUSG00000036036.16	ENSMUST00000173588.8	762	4	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	1482.71065582226	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAAAACAAGCCAGCAGCT	NA	False	NA	NA	False	NA	NA	NA	37313487	37320715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_37313670_37314177_37314208_37316941_37317087_37320310
transcript_24843.known	chr17	+	1595	4	FSM	ENSMUSG00000024462.18	ENSMUST00000174456.8	1595	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	13.0213499897497	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGTTTTGTAATTTGTCT	NA	False	NA	16	True	NA	NA	NA	37356919	37360359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_37357182_37357586_37357669_37358345_37358550_37359312
transcript_24845.known	chr17	+	4036	18	FSM	ENSMUSG00000024462.18	ENSMUST00000172792.8	4036	18	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_9	27.5216178006814	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCACTGTCCTGTGAACTG	NA	False	NA	40	True	AATAAA	-28	NA	37361522	37385196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_37362052_37365022_37365158_37365628_37365800_37366737_37366840_37367187_37367254_37367679_37367872_37373425_37373669_37374221_37374286_37375551_37375630_37378105_37378257_37378667_37378801_37380003_37380121_37380204_37380313_37380872_37380967_37381545_37381674_37382744_37382874_37383035_37383180_37383744
transcript_24846.known	chr17	+	1438	8	FSM	ENSMUSG00000016206.7	ENSMUST00000038580.7	1438	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	3.09047252182628	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACCCCATGTGTTCAAT	NA	False	NA	NA	False	AATAAA	-13	NA	37581110	37585375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_37581226_37581412_37581683_37581888_37582165_37583159_37583436_37583538_37583644_37584609_37584643_37584756_37584804_37585059
transcript_2485.nic	chr1	-	1682	14	NIC	ENSMUSG00000006010.15	novel	3273	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_12	29.9368170945323	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTAGTGCTATTGAACC	970	False	NA	NA	False	NA	NA	NA	150268494	150238271	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264371_150265986_150266108_150268440
transcript_24850.known	chr17	+	3674	13	FSM	ENSMUSG00000023921.10	ENSMUST00000169611.4	3674	13	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_5	30.8112533554436	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTTCCTGTTGTGTGTTC	NA	False	NA	NA	False	TATAAA	-23	NA	41245575	41272879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_41245671_41247934_41248354_41249405_41249774_41252206_41252365_41254697_41254870_41257912_41258162_41262645_41262758_41263669_41263786_41265992_41266109_41267097_41267230_41269220_41269369_41269592_41269761_41271458
transcript_24857.known	chr17	-	1442	9	FSM	ENSMUSG00000023919.10	ENSMUST00000087114.5	1942	9	496	4	496	-4	multi-exon	FALSE	canonical	3	128	junction_2	14.1283181943216	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTCTGATGTGTGAGTAG	NA	False	NA	-5	True	AATAAA	-23	NA	41245442	41233945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_41234508_41235179_41235258_41235392_41235513_41238029_41238160_41240904_41240971_41242540_41242668_41243686_41243742_41243971_41244107_41245273
transcript_2486.nic	chr1	-	1813	14	NIC	ENSMUSG00000006010.15	novel	1809	14	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_13	31.3627374725987	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTAGTGCTATTGAACC	963	False	NA	NA	False	NA	NA	NA	150268501	150238271	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268354
transcript_24860.known	chr17	-	1942	9	FSM	ENSMUSG00000023919.10	ENSMUST00000087114.5	1942	9	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_2	14.1283181943216	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGATGTGTGAGTAGAACT	NA	False	NA	-1	True	AATAAA	-27	NA	41245938	41233941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_41234508_41235179_41235258_41235392_41235513_41238029_41238160_41240904_41240971_41242540_41242668_41243686_41243742_41243971_41244107_41245273
transcript_24861.known	chr17	-	5364	18	FSM	ENSMUSG00000061665.8	ENSMUST00000024709.9	5364	18	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	39.8587471351445	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGTTGTTTTTTCCTG	NA	False	NA	-3	True	AATAAA	-17	NA	43187280	43103841	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_43107261_43109485_43109550_43116050_43116227_43118804_43118907_43119621_43119735_43126835_43126979_43127317_43127484_43131485_43131549_43133239_43133277_43135364_43135470_43136727_43136823_43137171_43137251_43140808_43140997_43145055_43145177_43149592_43149694_43156216_43156371_43163258_43163420_43187203
transcript_24862.nnic	chr17	+	3335	6	NNC	ENSMUSG00000023915.6	novel	3627	6	NA	NA	19741	0	at_least_one_novel_splicesite	FALSE	canonical	3	79	junction_1	56.2899635814414	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTTTTGGTATAT	NA	False	NA	21	True	AATAAA	-17	NA	43347199	43400080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_43347446_43348485_43349138_43350585_43351081_43375858_43376125_43396226_43396456_43398633
transcript_24863.nnic	chr17	+	1872	3	NNC	ENSMUSG00000023915.6	novel	3627	6	NA	NA	60718	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	116.5	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGGTTTTGGTATAT	NA	False	NA	21	True	AATAAA	-17	NA	43388176	43400080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_43388373_43396226_43396456_43398633
transcript_24866.known	chr17	+	3053	12	FSM	ENSMUSG00000023963.11	ENSMUST00000170988.2	3053	12	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_8	14.3492448040404	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGGCTGATGTCTGCCTAT	NA	False	NA	NA	False	CATAAA	-16	NA	43978315	44062322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_43978686_43987721_43987858_43991014_43991190_43993838_43993989_43996076_43996168_44002524_44002630_44012367_44012459_44036405_44036540_44041862_44041959_44042815_44042905_44057415_44057504_44060794
transcript_24867.known	chr17	+	2534	4	FSM	ENSMUSG00000023960.14	ENSMUST00000024756.5	2534	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	7.40870359029762	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATAGTGTTTTGTT	NA	False	NA	NA	False	ATTAAA	-18	NA	44389735	44397450	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_44389874_44391537_44392402_44393634_44393812_44396095
transcript_24870.known	chr17	-	4445	4	FSM	ENSMUSG00000023961.17	ENSMUST00000143137.2	4445	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	11.5854314646552	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATATCAGCCTTC	NA	False	NA	NA	False	AATAAA	-9	NA	44416655	44407206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_44410569_44412201_44412373_44412697_44413556_44416601
transcript_24872.known	chr17	-	4560	4	FSM	ENSMUSG00000023961.17	ENSMUST00000024757.14	4560	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	10.2740233382816	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCAGCCTTCTTAATTTG	NA	False	NA	NA	False	AATAAA	-17	NA	44416700	44407198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_44410569_44412201_44412373_44412697_44413556_44416539
transcript_24878.known	chr17	+	1180	12	FSM	ENSMUSG00000038954.15	ENSMUST00000127798.8	1180	12	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_10	31.9782984264006	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGGGAGTGGCCTGCTTT	NA	False	NA	22	True	AATAAA	-23	NA	45088282	45430173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_45088316_45097496_45097598_45234065_45234151_45302620_45302708_45305203_45305295_45313976_45314117_45344124_45344201_45347598_45347712_45348962_45349071_45352102_45352194_45359168_45359280_45430029
transcript_24879.known	chr17	+	1508	12	FSM	ENSMUSG00000038954.15	ENSMUST00000050630.14	1508	12	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_7	13.7774519348892	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGAGTGGCCTGCTTTGTTT	NA	False	NA	26	True	AATAAA	-27	NA	45088038	45430177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_45088316_45097496_45097598_45234065_45234151_45302620_45302708_45305203_45305295_45313976_45314117_45344124_45344201_45347598_45347712_45348962_45349071_45352102_45352274_45359168_45359280_45430029
transcript_24886.known	chr17	-	3027	16	FSM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	0	0	0	0	multi-exon	TRUE	canonical	3	561	junction_9	75.0022221893014	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTAGCCTTTTGTTTGAA	2184	False	NA	-2	True	AATAAA	-20	NA	45744663	45702809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_45703231_45703918_45704132_45715519_45715718_45718721_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
transcript_24889.nic	chr17	-	2058	13	ISM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	41	16008	41	480	5prime_fragment	FALSE	canonical	3	561	junction_6	47.8954300765973	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAAAATGTTGGGTTTGC	2225	False	NA	NA	False	AATAAA	-4	NA	45744622	45718817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_45718965_45719261_45719343_45721699_45721865_45722753_45722917_45724047_45724197_45726478_45726668_45727870_45728016_45730526_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
transcript_24892.known	chr17	-	997	8	FSM	ENSMUSG00000023935.11	ENSMUST00000233553.2	997	8	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_7	5.17450579322138	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTTTTGTAATATGGT	NA	False	NA	NA	False	NA	NA	NA	45785752	45756805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_45757010_45760360_45760477_45763603_45763667_45765016_45765138_45768083_45768246_45772087_45772237_45775352_45775507_45785724
transcript_24893.known	chr17	-	1160	8	FSM	ENSMUSG00000023935.11	ENSMUST00000024731.9	1160	8	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_7	6.20730313782869	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTAGCCTCTCCCATGGTA	NA	False	NA	NA	False	TATAAA	-21	NA	45785864	45759862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_45760118_45760360_45760477_45763603_45763667_45765016_45765138_45768083_45768246_45772087_45772237_45775352_45775507_45785724
transcript_24895.nic	chr17	-	878	6	ISM	ENSMUSG00000023932.10	ENSMUST00000024727.10	3027	16	20	27879	20	8013	5prime_fragment	FALSE	canonical	3	580	junction_1	48.2493523272593	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGAAAAGGAAAAAGAAGA	2204	False	NA	NA	False	NA	NA	NA	45744643	45730688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_45730746_45735426_45735527_45736777_45736906_45737445_45737608_45738864_45738969_45744316
transcript_24898.known	chr17	+	3349	22	FSM	ENSMUSG00000023938.9	ENSMUST00000024733.9	3349	22	0	0	0	0	multi-exon	TRUE	canonical	3	146	junction_8	22.4045468336421	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTT	NA	False	NA	19	True	AATACA	-33	NA	45817766	45831769	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_45818008_45818444_45818637_45819406_45819553_45819790_45819959_45820321_45820467_45825417_45825564_45825710_45825820_45826170_45826210_45826325_45826438_45826870_45827005_45827378_45827524_45827746_45827920_45828027_45828142_45828238_45828380_45828618_45828757_45828837_45828948_45829075_45829185_45829463_45829587_45829780_45829892_45830438_45830523_45830629_45830741_45831211
transcript_24901.known	chr17	+	2435	6	FSM	ENSMUSG00000023947.9	ENSMUST00000024742.9	2435	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	2.44948974278318	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGGTTATACGTTGCAA	NA	False	NA	NA	False	ATTAAA	-17	NA	45866628	45874095	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_45867241_45869420_45869524_45870133_45870357_45871049_45871139_45871333_45871574_45872927
transcript_24904.known	chr17	+	850	4	FSM	ENSMUSG00000037089.12	ENSMUST00000226086.2	850	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	186.912338335976	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAGCCAGCTCTAATGG	NA	False	NA	7	True	AATAAA	-16	NA	45874885	45876981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45876589
transcript_24905.known	chr17	+	1906	4	FSM	ENSMUSG00000037089.12	ENSMUST00000224905.2	1906	4	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	17.6823829464998	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTTTTGGTTGGCAT	NA	False	NA	9	True	ATTAAA	-19	NA	45874799	45878596	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_45874995_45875505_45875700_45875850_45876006_45877234
transcript_24907.known	chr17	+	1766	4	FSM	ENSMUSG00000037089.12	ENSMUST00000223987.2	1766	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	196.247009885218	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTGGTTGGCATT	NA	False	NA	10	True	ATTAAA	-20	NA	45875130	45878597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_45875185_45875505_45875700_45875850_45876006_45877234
transcript_2491.known	chr1	-	2851	13	FSM	ENSMUSG00000006010.15	ENSMUST00000097547.10	2851	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	38.2014942988709	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTAATGTGGAATTTTA	951	False	NA	NA	False	AATAAA	-13	NA	150268513	150237063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_150238640_150239241_150239350_150247779_150247951_150250545_150250637_150251246_150251376_150256062_150256129_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268440
transcript_2499.known	chr1	-	1809	14	FSM	ENSMUSG00000006010.15	ENSMUST00000094477.4	1809	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	45.878537865612	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGTTTA	970	False	NA	NA	False	NA	NA	NA	150268494	150238284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_150238640_150239241_150239350_150247779_150247951_150250529_150250637_150251246_150251376_150256062_150256129_150257249_150257346_150258018_150258160_150258808_150258846_150260179_150260287_150262108_150262205_150264273_150264409_150265986_150266108_150268354
transcript_24991.known	chr17	-	2520	11	FSM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	0	0	0	0	multi-exon	TRUE	canonical	3	9221	junction_4	988.252604347694	22353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTGCTCTCCTTGTAAC	NA	False	NA	-24	True	AATAAA	-19	NA	45884197	45878700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_45879051_45879154_45879489_45879783_45880053_45880165_45880314_45880395_45880753_45881183_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
transcript_25.known	ERCC-00074	+	506	1	FSM	ERCC-00074A	DQ516754	506	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11460	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00074_+_0_500
transcript_2500.known	chr1	+	3315	15	FSM	ENSMUSG00000023150.15	ENSMUST00000186745.2	3315	15	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_7	304.179802157895	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATTTAAGAACCCCAAAC	NA	False	NA	NA	False	NA	NA	NA	151220328	151239116	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151230917_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
transcript_2502.known	chr1	+	3511	15	FSM	ENSMUSG00000023150.15	ENSMUST00000023918.13	3511	15	0	0	0	0	multi-exon	TRUE	canonical	3	1145	junction_2	98.7764172879585	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCACTGTGGGATTTAATGT	NA	False	NA	17	True	ATTAAA	-21	NA	151220227	151240173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151231879_151231988_151235372_151235503_151235703_151235929_151236468_151236591_151236682_151236810_151236893_151237026_151237212_151237387_151238862
transcript_2509.known	chr1	+	2783	8	FSM	ENSMUSG00000023150.15	ENSMUST00000111887.10	2783	8	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_7	396.626282743927	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACGTCTGTAGCCTTTTA	NA	False	NA	11	True	ATTAAA	-28	NA	151220259	151232550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_151220507_151225126_151225355_151226731_151226861_151227304_151227475_151227580_151227657_151229670_151229845_151230384_151230511_151230917
transcript_25100.nic	chr17	-	947	6	ISM	ENSMUSG00000023944.15	ENSMUST00000024739.14	2520	11	-42	2640	-42	30	5prime_fragment	FALSE	canonical	3	9263	junction_4	453.58333302713	998	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAACAAAGAAGATCAAAG	NA	False	NA	15	True	NA	NA	NA	45884239	45881340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_45881493_45881591_45881726_45881943_45882104_45882338_45882546_45882690_45882838_45884092
transcript_25101.known	chr17	-	703	6	FSM	ENSMUSG00000023944.15	ENSMUST00000163966.8	703	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4038.94278246177	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATGGGCTTGGCAGTGTT	NA	False	NA	-171	True	AAGAAA	-40	NA	45884181	45881588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_45881726_45881943_45882104_45882338_45882408_45882444_45882546_45882690_45882838_45884092
transcript_2511.known	chr1	-	3688	20	FSM	ENSMUSG00000052748.15	ENSMUST00000064771.12	3688	20	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_7	20.5845328266092	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGCTTTTCCGTTTACT	NA	False	NA	0	True	AATAAA	-18	NA	151304206	151243449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151286521_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
transcript_25120.nic	chr17	-	2152	14	NIC	ENSMUSG00000023942.16	novel	2092	14	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	1063	junction_5	395.007197897117	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906553	45896128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
transcript_25124.nic	chr17	-	2146	14	NIC	ENSMUSG00000023942.16	novel	1988	13	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	1453	junction_5	311.5369990469	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906553	45896128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45904257_45904359_45906407
transcript_25130.known	chr17	-	1996	13	FSM	ENSMUSG00000023942.16	ENSMUST00000051574.13	1996	13	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_12	699.864927444337	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906498	45896128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899921_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
transcript_25134.known	chr17	-	1988	13	FSM	ENSMUSG00000023942.16	ENSMUST00000064889.13	1988	13	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_12	659.372555287727	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCTGTGCATCCTTCC	NA	False	NA	-4	True	AATAAA	-15	NA	45906496	45896128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45906407
transcript_25135.known	chr17	-	2033	13	FSM	ENSMUSG00000023942.16	ENSMUST00000171847.8	2033	13	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_12	693.627476668052	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGCATCCTTCCAAG	NA	False	NA	-1	True	AATAAA	-18	NA	45910529	45896125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_45896709_45897019_45897232_45898153_45898240_45898487_45898597_45899214_45899313_45899927_45900001_45900133_45900232_45900339_45900475_45900606_45900747_45900848_45901052_45901182_45901265_45903104_45903188_45910398
transcript_25144.known	chr17	-	616	2	FSM	ENSMUSG00000079471.5	ENSMUST00000169137.3	616	2	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	0	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTCCTAGCAGGCTACAG	NA	False	NA	NA	False	NA	NA	NA	45912892	45912179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_45912612_45912708
transcript_25145.known	chr17	-	437	2	FSM	ENSMUSG00000079471.5	ENSMUST00000208801.2	437	2	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGTCCGCACGCACGGGCAT	NA	False	NA	NA	False	NA	NA	NA	45912896	45912278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_45912612_45912792
transcript_25146.known	chr17	-	804	2	FSM	ENSMUSG00000079471.5	ENSMUST00000178858.3	804	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGGTGGTGGCTTTTGT	NA	False	NA	-5	True	AATAAA	-20	NA	45912993	45911896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_45912612_45912904
transcript_25147.nic	chr17	-	2097	18	ISM	ENSMUSG00000058626.17	ENSMUST00000120717.8	2591	22	16336	0	16308	0	3prime_fragment	FALSE	canonical	0	0	junction_6	2.25072076114223	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCCACTTAATTCTTCA	NA	False	NA	NA	False	AATAAA	-14	NA	45953915	45941129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_45941538_45941651_45941711_45942713_45942828_45942934_45943014_45943306_45943376_45943624_45943690_45943800_45943859_45943965_45944032_45944294_45944335_45944697_45944910_45945193_45945206_45949620_45949797_45949994_45950159_45950335_45950411_45950548_45950635_45950728_45950813_45953393_45953563_45953754
transcript_25148.known	chr17	-	3284	24	FSM	ENSMUSG00000036026.16	ENSMUST00000113523.9	3284	24	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_20	27.310993375713	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGGTTGGCAGTCCCTC	NA	False	NA	-6	True	AATAAA	-20	NA	45997185	45971096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_45971907_45972148_45972230_45972379_45972496_45972682_45972851_45973788_45973895_45974432_45974596_45975669_45975736_45975844_45975932_45976090_45976198_45976952_45977107_45977242_45977381_45977503_45977638_45978620_45978745_45980868_45980950_45984085_45984157_45984658_45984768_45984904_45984957_45985044_45985188_45986311_45986350_45988851_45988943_45989888_45989928_45990162_45990243_45990457_45990641_45997042
transcript_25152.known	chr17	+	531	4	FSM	ENSMUSG00000023939.8	ENSMUST00000149040.2	531	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	381.380241870091	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTGGGCGACCAGATCCTG	NA	False	NA	NA	False	NA	NA	NA	45997282	46009104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_45997354_46006407_46006499_46007644_46007883_46008973
transcript_25154.known	chr17	+	645	3	FSM	ENSMUSG00000023939.8	ENSMUST00000024734.8	645	3	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_1	143	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGAGCTGTGATCG	NA	False	NA	37	True	AATAAA	-26	NA	45997247	46009421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_45997354_46006407_46006499_46008973
transcript_25158.nnic	chr17	+	641	3	NNC	ENSMUSG00000023939.8	novel	510	2	NA	NA	-119	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	542	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTCTGAGCTGTGATCG	NA	False	NA	37	True	AATAAA	-26	NA	46006222	46009421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_46006325_46006407_46006499_46008973
transcript_25159.known	chr17	-	518	2	FSM	ENSMUSG00000094690.3	ENSMUST00000233108.2	518	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAATCTGATTTCATCTA	NA	False	NA	NA	False	AATAGA	-15	NA	46044770	46043789	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_46044049_46044511
transcript_2516.nic	chr1	-	2315	18	NIC	ENSMUSG00000052748.15	novel	3688	20	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_14	42.2765651215601	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATTTCATAGATACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	151304242	151244114	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_151244340_151246329_151246395_151248058_151248126_151255133_151255266_151260067_151260256_151264370_151264520_151267186_151267326_151270359_151270524_151272956_151273103_151276830_151276925_151278705_151278895_151279545_151279648_151281166_151281297_151283326_151283387_151295850_151295935_151297784_151297872_151299257_151299357_151304047
transcript_25160.known	chr17	+	735	5	FSM	ENSMUSG00000097727.9	ENSMUST00000233473.2	735	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.22474487139159	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCATGGCTCCCACGGCAA	NA	False	NA	NA	False	ATTAAA	-11	NA	46078120	46092173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_46078234_46087083_46087345_46090184_46090318_46091845_46091900_46091999
transcript_25164.known	chr17	+	884	6	FSM	ENSMUSG00000023967.10	ENSMUST00000024763.10	884	6	0	0	0	0	multi-exon	FALSE	canonical	3	1040	junction_5	46.4732180938656	739	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGGTCAGTGCTTAGAA	NA	False	NA	19	True	AATAAA	-19	NA	46421911	46439836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_46422056_46428865_46428898_46433649_46433758_46436215_46436340_46436568_46436639_46439430
transcript_25166.known	chr17	-	966	5	FSM	ENSMUSG00000023966.9	ENSMUST00000024762.3	966	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.22474487139159	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTGTCTTGATTGTTGT	NA	False	NA	NA	False	CATAAA	-21	NA	46455142	46440196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_46440425_46445898_46446046_46447667_46447798_46452472_46452639_46454847
transcript_25168.known	chr17	-	1272	3	FSM	ENSMUSG00000034509.10	ENSMUST00000171172.3	1272	3	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	3.5	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTTTGATTTAGACTTTT	NA	False	NA	-2	True	AATAAA	-21	NA	46464479	46458312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_46459211_46463704_46463968_46464368
transcript_25170.known	chr17	+	2966	12	FSM	ENSMUSG00000023952.14	ENSMUST00000024748.14	2966	12	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	11.1762735698931	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGCTTATTCTTAAGACA	NA	False	NA	5	True	AATAAA	-18	NA	46471957	46480296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_46472253_46474408_46474436_46475119_46475305_46475650_46475760_46475911_46476110_46476380_46476556_46476703_46476924_46477236_46477373_46477517_46477577_46478148_46478321_46478651_46478817_46479071
transcript_25171.known	chr17	+	2929	12	FSM	ENSMUSG00000023952.14	ENSMUST00000169383.8	2929	12	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	18.651656696408	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCTGCTTATTCTTAAGA	NA	False	NA	3	True	AATAAA	-16	NA	46471957	46480294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_46472218_46474408_46474436_46475119_46475305_46475650_46475760_46475911_46476110_46476380_46476556_46476703_46476924_46477236_46477373_46477517_46477577_46478148_46478321_46478651_46478817_46479071
transcript_25177.known	chr17	-	3238	11	FSM	ENSMUSG00000023953.10	ENSMUST00000024749.9	3238	11	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_7	5.44426303552648	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGGCTTGCATACTTTT	7123	False	NA	-12	True	AATAAA	-15	NA	46513571	46482280	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_46484023_46486076_46486247_46492391_46492458_46493610_46493735_46495615_46495736_46498952_46499057_46501532_46501703_46505127_46505343_46509559_46509695_46510317_46510461_46513322
transcript_25179.nnic	chr17	-	1421	9	NNC	ENSMUSG00000023953.10	novel	3238	11	NA	NA	-12	-9330	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	8.56500875656295	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGGCTTTTTTTCTTA	7111	False	NA	NA	False	TATAAA	-23	NA	46513583	46492480	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_46492630_46493610_46493735_46495615_46495736_46498952_46499057_46501532_46501703_46505127_46505343_46509559_46509695_46510317_46510461_46513322
transcript_2518.nic	chr1	-	822	6	ISM	ENSMUSG00000052748.15	ENSMUST00000111883.9	2855	19	-55	42794	-36	0	5prime_fragment	FALSE	canonical	3	144	junction_1	12.983065893694	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAATAAAGACAGTTC	NA	False	NA	NA	False	AAGAAA	-4	NA	151304242	151286908	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_151287210_151288541_151288598_151295850_151295935_151297784_151297872_151299257_151299357_151304047
transcript_25180.known	chr17	+	5081	32	FSM	ENSMUSG00000067150.7	ENSMUST00000087031.7	5081	32	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_23	77.9414252168146	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGGCCCTATTTTCCTTT	NA	False	NA	14	True	AGTAAA	-16	NA	46513707	46554524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_46513952_46515580_46515703_46517412_46517486_46518704_46518843_46519000_46519184_46525115_46525143_46525502_46525689_46526657_46526735_46528507_46528608_46529470_46529555_46530316_46530443_46531686_46531778_46532278_46532408_46533586_46533718_46535941_46536098_46537338_46537381_46537844_46537935_46538655_46538856_46540237_46540338_46541124_46541307_46544643_46544745_46545378_46545476_46546790_46546928_46547838_46547937_46549298_46549346_46549815_46549914_46550439_46550503_46551083_46551167_46551740_46551849_46552342_46552481_46552651_46552817_46553059
transcript_25184.known	chr17	+	2137	5	FSM	ENSMUSG00000067150.7	ENSMUST00000233340.2	2137	5	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_2	19.3180614969515	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAGGAAAGAGGTTGAGG	NA	False	NA	NA	False	NA	NA	NA	46513742	46520595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_46513952_46515580_46515703_46517412_46517486_46518704_46518843_46519000
transcript_25191.known	chr17	-	1314	9	FSM	ENSMUSG00000067148.16	ENSMUST00000087026.13	1314	9	0	0	0	0	multi-exon	TRUE	canonical	3	702	junction_8	54.719597723302	1321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTTTTTTTTGTCTA	NA	False	NA	2	True	AATAAA	-25	NA	46558980	46554845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_46555147_46555231_46555349_46555451_46555602_46555724_46555878_46555956_46556077_46556541_46556675_46557032_46557141_46558654_46558727_46558820
transcript_2520.known	chr1	+	2749	15	FSM	ENSMUSG00000053286.12	ENSMUST00000065625.12	2749	15	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_10	24.5323609686038	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	15	True	AATAAA	-16	NA	151304292	151333912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
transcript_25201.known	chr17	-	576	2	FSM	ENSMUSG00000067148.16	ENSMUST00000124126.2	576	2	0	0	0	0	multi-exon	FALSE	canonical	3	702	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCTGCCTCCCATGC	NA	False	NA	NA	False	NA	NA	NA	46558894	46558224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_46558727_46558820
transcript_25202.nnic	chr17	+	1563	9	NNC	ENSMUSG00000071074.10	novel	2035	9	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_7	55.4209741433692	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGTAGCTCCTGTTGGC	2563	False	NA	23	True	ATTAAA	-18	NA	46558988	46562943	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562154_46562258_46562414_46562491
transcript_25203.known	chr17	+	2035	9	FSM	ENSMUSG00000071074.10	ENSMUST00000095263.10	2035	9	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_8	7.84219357067906	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGATGGTTCACAGTTGC	2580	False	NA	NA	False	NA	NA	NA	46559005	46563463	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562154_46562289_46562414_46562491
transcript_25204.known	chr17	+	1570	8	FSM	ENSMUSG00000071074.10	ENSMUST00000151488.2	1570	8	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_7	7.73542078324622	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGATTGAAGTCTAGACC	2645	False	NA	7	True	ATTAAA	-2	NA	46559070	46562927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_46559255_46559766_46559965_46560104_46560212_46561336_46561383_46561495_46561589_46561719_46561852_46562039_46562414_46562491
transcript_25209.nic	chr17	-	2661	12	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_7	112.156620125682	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5811	False	NA	-30	True	AATAAA	-18	NA	46593947	46568799	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575019_46575117_46575808_46575905_46582725_46582856_46593271_46593366_46593885
transcript_25213.nic	chr17	-	2531	11	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_7	117.719199793407	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5811	False	NA	-30	True	AATAAA	-18	NA	46593947	46568799	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575019_46575117_46575808_46575905_46593271_46593366_46593885
transcript_25216.nic	chr17	-	2564	11	NIC	ENSMUSG00000012296.17	novel	2559	11	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	80	junction_7	97.6076328982524	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5811	False	NA	-30	True	AATAAA	-18	NA	46593947	46568799	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46582725_46582856_46593271_46593366_46593885
transcript_25217.known	chr17	-	2559	11	FSM	ENSMUSG00000012296.17	ENSMUST00000164342.10	2559	11	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_7	88.074059745194	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTAATTTCTTTCTCCTT	5819	False	NA	-30	True	AATAAA	-18	NA	46593939	46568799	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46582725_46582856_46593271_46593366_46593885
transcript_2522.nic	chr1	+	2491	15	NIC	ENSMUSG00000053286.12	novel	2749	15	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	47.2939138337512	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	15	True	AATAAA	-16	NA	151304378	151333912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_151304682_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151324004_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
transcript_25222.known	chr17	-	2426	10	FSM	ENSMUSG00000012296.17	ENSMUST00000012440.14	2426	10	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_7	101.660412679532	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAATTTCTTTCTCCTTCCC	5822	False	NA	-27	True	AATAAA	-21	NA	46593936	46568796	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574737_46575808_46575905_46593271_46593366_46593885
transcript_25224.known	chr17	-	2412	10	FSM	ENSMUSG00000012296.17	ENSMUST00000225080.2	2412	10	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_7	91.006850915633	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCTTAATTTCTTTCTC	5833	False	NA	-33	True	AATAAA	-15	NA	46593925	46568802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_46570410_46570862_46570947_46571020_46571129_46572061_46572129_46572344_46572507_46573327_46573357_46574614_46574740_46575808_46575905_46593271_46593366_46593885
transcript_25228.nnic	chr17	-	1574	10	NNC	ENSMUSG00000067144.8	novel	1989	10	NA	NA	-25	-56	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_9	11.5960827783553	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGGAAGTCATTGACTT	3620	False	NA	NA	False	AATAAA	-34	NA	46748580	46743164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_46743444_46743872_46744080_46744500_46744610_46744774_46744990_46745474_46745585_46745810_46745935_46747734_46747904_46748004_46748160_46748248_46748353_46748478
transcript_2523.nnic	chr1	-	3182	8	NNC	ENSMUSG00000026484.14	novel	3160	7	NA	NA	8	-105	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_6	238.380762132983	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTATCTAAGCAGAAAGTT	NA	False	NA	-5	True	ATTAAA	-30	NA	151376698	151345261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_151347169_151347388_151347561_151348822_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151359481_151359617_151376469
transcript_25232.nic	chr17	-	678	3	ISM	ENSMUSG00000067144.8	ENSMUST00000233715.2	1410	10	3863	-174	3863	-56	3prime_fragment	FALSE	canonical	3	32	junction_1	4.5	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGGAAGTCATTGACTT	7508	False	NA	NA	False	AATAAA	-34	NA	46744692	46743164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_46743444_46743872_46744080_46744500
transcript_25238.known	chr17	+	1190	4	FSM	ENSMUSG00000040658.8	ENSMUST00000046497.8	1190	4	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_2	31.4960314960472	686	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCACGGTGTC	NA	False	NA	14	True	NA	NA	NA	46807636	46810550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_46807899_46809350_46809420_46809568_46809680_46809802
transcript_25242.nnic	chr17	-	2412	17	NNC	ENSMUSG00000003546.11	novel	2313	16	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_16	30.5511226266728	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCGGAGTCTTCATTG	NA	False	NA	-2	True	AATAAA	-18	NA	46956974	46941549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956006_46956080_46956900
transcript_25243.known	chr17	-	2313	16	FSM	ENSMUSG00000003546.11	ENSMUST00000233974.2	2313	16	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_15	23.4960043884534	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCGGAGTCTTCATTG	NA	False	NA	-2	True	AATAAA	-18	NA	46956948	46941549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_46942000_46942753_46942818_46942958_46943075_46943675_46943817_46946335_46946445_46946657_46946729_46946901_46946955_46947118_46947219_46947545_46947720_46947838_46947941_46950320_46950409_46950816_46951037_46951548_46951631_46953039_46953271_46955174_46955439_46956900
transcript_2525.known	chr1	+	1567	7	FSM	ENSMUSG00000053286.12	ENSMUST00000188179.7	1567	7	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_2	23.1732604525129	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	151304292	151319459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_151304854_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997
transcript_25250.known	chr17	+	991	7	FSM	ENSMUSG00000002767.14	ENSMUST00000113430.2	991	7	0	0	0	0	multi-exon	FALSE	canonical	1	17	junction_1	404.985047734961	819	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACCTTTTCACTTGGGAGG	NA	False	NA	35	True	AATAAA	-24	NA	46957195	46961065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_46957325_46958321_46958485_46959162_46959305_46959397_46959514_46959584_46959696_46959960_46960035_46960809
transcript_25252.known	chr17	+	998	7	FSM	ENSMUSG00000002767.14	ENSMUST00000113429.8	998	7	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	389.469903273097	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCTTACTACCTTTTCAC	NA	False	NA	27	True	AATAAA	-16	NA	46957175	46961057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_46957325_46958315_46958485_46959162_46959305_46959397_46959514_46959595_46959696_46959960_46960035_46960809
transcript_25264.nnic	chr17	-	2241	8	NNC	ENSMUSG00000023971.10	novel	1289	7	NA	NA	-3	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	153.326382569461	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTTGCATCAGCCTGCT	NA	False	NA	-2	True	NA	NA	NA	46985281	46977248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_46978172_46978360_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
transcript_25265.nnic	chr17	-	1343	8	NNC	ENSMUSG00000023971.10	novel	1289	7	NA	NA	-3	237	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	153.326382569461	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCCCGGCCTGTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	46985281	46978146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_46978172_46978360_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
transcript_2527.known	chr1	-	3160	7	FSM	ENSMUSG00000026484.14	ENSMUST00000076110.11	3160	7	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_6	52.4404424085076	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTATTAGATGTGTACT	NA	False	NA	-6	True	CATAAA	-19	NA	151376706	151345156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_151347169_151347388_151347561_151348822_151349096_151351890_151352107_151352622_151352784_151354287_151354377_151376469
transcript_25271.known	chr17	-	1289	7	FSM	ENSMUSG00000023971.10	ENSMUST00000233136.2	1289	7	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_2	28.055995596109	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	46985278	46978386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46983261_46983367_46983450_46983518_46983631_46983774_46985122
transcript_25274.known	chr17	-	537	6	FSM	ENSMUSG00000023971.10	ENSMUST00000232697.2	537	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	177.485097965998	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACGCAGCAAGAAGCTGGA	NA	False	NA	NA	False	NA	NA	NA	46985213	46978968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46983450_46983518_46983631_46983774_46985122
transcript_25282.known	chr17	-	406	4	FSM	ENSMUSG00000023971.10	ENSMUST00000233247.2	406	4	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	166.85522666871	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTGTCCCAGGAGACCT	NA	False	NA	NA	False	NA	NA	NA	46985196	46978873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_46979013_46980830_46980949_46981036_46981112_46985122
transcript_25288.known	chr17	-	3038	15	FSM	ENSMUSG00000059409.10	ENSMUST00000233988.2	3038	15	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_14	104.207504919908	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTGAGTCGCCTTGGTGT	1000	False	NA	NA	False	AATAAA	-15	NA	47016037	46993916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_46995053_46995186_46995304_46995431_46995505_46995590_46995693_46996227_46996356_46996444_46996616_46996979_46997034_46997188_46997358_46997484_46997616_46997959_46998053_46998175_46998287_46998371_46998572_46998762_46998956_47010994_47011076_47015758
transcript_25293.known	chr17	-	2100	12	FSM	ENSMUSG00000063576.13	ENSMUST00000071841.7	2100	12	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_11	42.5343808432544	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTCCTATTTCTGGCGAC	NA	False	NA	0	True	TATAAA	-17	NA	46991830	46985475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
transcript_25295.known	chr17	-	1854	12	FSM	ENSMUSG00000063576.13	ENSMUST00000233733.2	1854	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	123.030534407903	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCGGCTAATTCTTGCT	NA	False	NA	NA	False	NA	NA	NA	46991729	46986689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_46987148_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46989967_46990121_46991627
transcript_25296.known	chr17	-	1954	11	FSM	ENSMUSG00000063576.13	ENSMUST00000165007.9	1954	11	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	118.520082686438	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGTGTCCTATTTCTGGC	NA	False	NA	-3	True	TATAAA	-14	NA	46991840	46985478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_46986079_46987241_46987321_46987429_46987504_46987622_46987732_46987869_46987957_46988030_46988245_46988353_46988426_46988610_46988727_46988857_46989035_46989206_46989420_46991627
transcript_25304.known	chr17	+	748	4	FSM	ENSMUSG00000002768.9	ENSMUST00000232732.2	748	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	423.826222249953	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCCCAGCCCACCTTAG	NA	False	NA	-69	True	NA	NA	NA	46991383	46993963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_46991429_46992542_46992824_46992934_46993038_46993644
transcript_25305.known	chr17	+	673	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233491.2	673	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	413.462076723959	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGAGCTGCCTTACCTCCC	NA	False	NA	NA	False	NA	NA	NA	46991928	46993802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_46992060_46992542_46992824_46992934_46993038_46993644
transcript_25306.known	chr17	+	945	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233430.2	945	4	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_1	155.5913450892	554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGCCACACCGCCTGTGCT	NA	False	NA	-4	True	AATAAA	-21	NA	46991911	46994028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_46992089_46992542_46992824_46992934_46993038_46993644
transcript_25308.known	chr17	+	859	4	FSM	ENSMUSG00000002768.9	ENSMUST00000002845.8	859	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	390.850639275699	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCCTGTGCTCCTGAATCC	NA	False	NA	5	True	AATAAA	-30	NA	46992049	46994037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_46992132_46992542_46992824_46992934_46993038_46993644
transcript_25309.known	chr17	+	766	4	FSM	ENSMUSG00000002768.9	ENSMUST00000233612.2	766	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	424.297327616169	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAGTTCTGTACATATGG	NA	False	NA	-99	True	NA	NA	NA	46992105	46993933	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_46992199_46992542_46992824_46992934_46993038_46993644
transcript_2531.known	chr1	+	1527	3	FSM	ENSMUSG00000053286.12	ENSMUST00000185230.7	1527	3	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_2	4.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAGAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-21	NA	151304417	151312458	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_151304854_151309544_151309656_151311478
transcript_25310.known	chr17	-	1035	6	FSM	ENSMUSG00000002769.10	ENSMUST00000002846.9	1035	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	8.1338797630651	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCCTGGTGTTTCTT	2979	False	NA	NA	False	AGTAAA	-23	NA	47040094	47036589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_47036898_47036986_47037109_47037194_47037338_47037531_47037643_47038190_47038319_47039871
transcript_25312.nnic	chr17	-	954	5	NIC	ENSMUSG00000002769.10	novel	1035	6	NA	NA	-62	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	9.86154146165801	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCCTGGTGTTTCTT	2917	False	NA	NA	False	AGTAAA	-23	NA	47040156	47036589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_47036898_47036986_47037109_47037531_47037643_47038190_47038319_47039871
transcript_25316.known	chr17	-	1908	6	FSM	ENSMUSG00000023973.14	ENSMUST00000059844.13	1908	6	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_4	48.1730214954387	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCAAAGGGGTTTTGACC	NA	False	NA	33	True	NA	NA	NA	47063140	47046630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_47047835_47048100_47048219_47048652_47048776_47054111_47054209_47058346_47058471_47062898
transcript_25318.known	chr17	-	1619	4	FSM	ENSMUSG00000023973.14	ENSMUST00000129200.2	1619	4	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_3	233.055072175369	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTGCTACTGCTATGAA	NA	False	NA	-18	True	NA	NA	NA	47063123	47046681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_47047835_47048100_47048219_47048652_47048776_47062898
transcript_25319.known	chr17	-	561	3	FSM	ENSMUSG00000023973.14	ENSMUST00000121671.2	561	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	258.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGGACAGTGTGCTCATA	NA	False	NA	NA	False	NA	NA	NA	47063121	47057912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_47058127_47058346_47058471_47062898
transcript_25320.known	chr17	-	531	2	FSM	ENSMUSG00000023973.14	ENSMUST00000148656.2	531	2	0	0	0	0	multi-exon	FALSE	canonical	3	518	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAAATTTCTCATCCAGAA	NA	False	NA	NA	False	NA	NA	NA	47063103	47058144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_47058471_47062898
transcript_25321.known	chr17	+	762	1	FSM	ENSMUSG00000062619.7	ENSMUST00000071430.7	762	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	88	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTAACTTGGCAGTCGTT	NA	False	NA	10	True	GATAAA	-18	NA	47083560	47084322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_47083600_47084300
transcript_25329.known	chr17	-	2606	7	FSM	ENSMUSG00000063888.8	ENSMUST00000078286.6	2606	7	0	0	0	0	multi-exon	FALSE	canonical	3	1943	junction_1	138.303309994937	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGAGCCGTTCGCCCAG	NA	False	NA	NA	False	NA	NA	NA	47093582	47084832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_47086663_47088977_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
transcript_2533.known	chr1	+	2441	15	FSM	ENSMUSG00000053286.12	ENSMUST00000189655.2	2441	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	65.1973456327098	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTGGGCTCGCGT	NA	False	NA	15	True	AATAAA	-16	NA	151304456	151333912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_151304682_151309544_151309656_151311478_151311593_151315266_151315332_151316556_151316687_151318337_151318462_151318997_151319078_151323976_151324249_151325650_151325864_151327798_151327990_151328827_151328907_151329635_151329803_151330728_151330792_151333213_151333341_151333432
transcript_25330.known	chr17	-	1310	6	FSM	ENSMUSG00000063888.8	ENSMUST00000233192.2	1310	6	0	0	0	0	multi-exon	FALSE	canonical	3	2131	junction_4	73.7276067697847	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCCCTAAATCTCTTTATC	NA	False	NA	NA	False	NA	NA	NA	47093582	47088443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_47089198_47089335_47089446_47090210_47090349_47091316_47091478_47092708_47092818_47093544
transcript_25334.known	chr17	+	1164	1	FSM	ENSMUSG00000036430.9	ENSMUST00000040434.9	1164	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGCTGGTTTGGCCTTCC	5307	False	NA	21	True	ATTAAA	-21	NA	47201609	47202773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_47201600_47202800
transcript_25335.known	chr17	-	7633	47	FSM	ENSMUSG00000023977.16	ENSMUST00000113337.10	7633	47	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_37	23.6319046780947	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGAGTTTTGCCTCCATCTT	NA	False	NA	-4	True	AATAAA	-17	NA	47321446	47239220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_47241427_47243378_47243481_47245000_47245172_47246359_47246438_47249575_47249633_47250227_47250337_47251929_47252061_47253645_47253737_47254262_47254399_47255433_47255502_47255716_47255814_47255971_47256028_47256943_47257093_47259498_47259578_47262807_47262912_47264823_47264986_47265795_47265890_47266707_47266908_47267483_47267663_47268039_47268121_47268230_47268341_47270389_47270493_47272424_47272580_47274072_47274122_47274613_47274717_47275682_47275736_47277066_47277192_47277957_47278022_47278115_47278239_47279309_47279376_47280116_47280228_47281026_47281089_47283789_47283974_47284842_47284972_47286665_47286766_47286852_47287017_47291414_47291514_47292279_47292369_47293191_47293300_47294146_47294268_47296914_47296978_47297570_47297710_47299578_47299710_47301917_47302032_47303916_47303996_47311511_47311772_47321067
transcript_25347.known	chr17	+	1018	7	FSM	ENSMUSG00000034729.17	ENSMUST00000119945.8	1018	7	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_2	381.394116659162	307	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCTGGTTTTGTTTACT	7141	False	NA	7	True	NA	NA	NA	47679815	47689606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_47679880_47683351_47683417_47683497_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
transcript_25348.known	chr17	+	1017	7	FSM	ENSMUSG00000034729.17	ENSMUST00000120737.8	1017	7	0	0	0	0	multi-exon	FALSE	canonical	3	977	junction_2	314.646892034018	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGCTGGTTTTGTTTA	7137	False	NA	5	True	NA	NA	NA	47679811	47689604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_47679880_47683351_47683417_47683500_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
transcript_2535.known	chr1	+	6531	14	FSM	ENSMUSG00000026483.14	ENSMUST00000148810.8	6531	14	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_12	16.2156327524439	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAGTTGCTCATTTATC	NA	False	NA	11	True	AATAAA	-19	NA	151447123	151597690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_151447336_151512154_151512286_151517178_151517311_151520625_151520741_151525029_151525195_151565269_151565386_151571440_151571546_151571875_151572039_151575859_151576048_151579452_151579615_151581737_151581849_151584847_151584956_151591410_151591523_151592979
transcript_25354.nic	chr17	+	1111	6	NIC	ENSMUSG00000034729.17	novel	1017	7	NA	NA	-10	0	intron_retention	FALSE	canonical	3	1493	junction_5	178.399103136759	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGCTGGTTTTGTTTA	7127	False	NA	5	True	NA	NA	NA	47679801	47689604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_47679880_47683351_47683571_47685897_47686035_47686858_47686968_47688684_47688775_47689126
transcript_25357.known	chr17	+	1668	4	FSM	ENSMUSG00000023979.15	ENSMUST00000024774.14	1668	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	4.64279609239471	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTGTCCTGGAGGTGAA	1130	False	NA	NA	False	ATTAAA	-15	NA	47696317	47703892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_47696622_47700034_47700185_47701905_47702027_47702799
transcript_25360.nnic	chr17	-	534	3	NNC	ENSMUSG00000023982.9	novel	873	4	NA	NA	4870	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	29	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGAGTCTCAGCTTTTTT	6706	False	NA	0	True	NA	NA	NA	47706639	47705482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_47705746_47706032_47706127_47706462
transcript_25361.nic	chr17	-	577	3	ISM	ENSMUSG00000023982.9	ENSMUST00000059348.9	873	4	4817	0	4817	0	3prime_fragment	FALSE	canonical	3	65	junction_1	4	55	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGAGTCTCAGCTTTTTT	6653	False	NA	0	True	NA	NA	NA	47706692	47705482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_47705746_47706032_47706127_47706472
transcript_25362.known	chr17	+	4866	5	FSM	ENSMUSG00000034382.15	ENSMUST00000150819.3	4866	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	3.20156211871642	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGGTTGGTGACTTAA	9562	False	NA	13	True	AATAAA	-31	NA	47747729	47781563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_47747875_47757489_47757597_47774878_47774955_47776603_47779779_47780200
transcript_25363.known	chr17	-	2784	9	FSM	ENSMUSG00000023980.8	ENSMUST00000067103.4	2784	9	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	52.1152568831815	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTATGATTATTTTAT	NA	False	NA	NA	False	NA	NA	NA	47813217	47798974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_47800822_47801067_47801208_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
transcript_25364.known	chr17	-	1263	8	FSM	ENSMUSG00000023980.8	ENSMUST00000233174.2	1263	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	61.3926805449135	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATTTATTTATTATTATA	NA	False	NA	NA	False	AATAAA	-19	NA	47813212	47794288	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_47794760_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
transcript_25366.known	chr17	-	2793	8	FSM	ENSMUSG00000023980.8	ENSMUST00000233121.2	2793	8	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	41.4984632122636	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACATAGGGCCTCTCAAAT	NA	False	NA	-4	True	AATAAA	-31	NA	47813212	47799206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_47801208_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
transcript_25367.nnic	chr17	-	2422	8	NIC	ENSMUSG00000023980.8	novel	2784	9	NA	NA	-22	-12	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	67.8948767265564	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAAATGACTCAGACATAG	NA	False	NA	-16	True	AATAAA	-19	NA	47813239	47799218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_47800822_47804486_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
transcript_25368.known	chr17	-	1692	7	FSM	ENSMUSG00000023980.8	ENSMUST00000233274.2	1692	7	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	14.5535409971442	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACAAACAAAAC	NA	False	NA	NA	False	TATAAA	-27	NA	47813214	47803588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_47804630_47805266_47805415_47807502_47807628_47809102_47809166_47809464_47809564_47812208_47812366_47813155
transcript_25370.known	chr17	-	3854	7	FSM	ENSMUSG00000023988.9	ENSMUST00000024783.9	3854	7	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_6	15.1180539605981	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCTTAAGACCCCACAATC	2341	False	NA	-6	True	AATAAA	-17	NA	47922417	47910255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_47912824_47913316_47913420_47913562_47913724_47914780_47914915_47915179_47915319_47917763_47917927_47921831
transcript_25374.known	chr17	+	1977	5	FSM	ENSMUSG00000034165.17	ENSMUST00000182209.8	1977	5	0	0	0	0	multi-exon	FALSE	canonical	3	3602	junction_2	267.432701814868	448	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47904394	47910614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
transcript_25376.nic	chr17	+	1682	5	NIC	ENSMUSG00000034165.17	novel	385	3	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_1	1687.74514885986	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47905242	47910614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_47905331_47905658_47905875_47908344_47908505_47908927_47909065_47909533
transcript_2538.known	chr1	-	9559	6	FSM	ENSMUSG00000032666.17	ENSMUST00000044581.14	9559	6	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_2	7.73045923603508	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGGCTCTGTTCTTTCT	NA	False	NA	NA	False	ATTAAA	-16	NA	151965876	151760274	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_151769184_151791232_151791294_151796797_151796875_151856176_151856272_151882295_151882519_151965682
transcript_25380.known	chr17	+	931	4	FSM	ENSMUSG00000034165.17	ENSMUST00000182539.8	931	4	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	1891.51068373051	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCAACCTTCTCAGTT	NA	False	NA	NA	False	NA	NA	NA	47906992	47910019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_47907141_47908344_47908505_47908927_47909065_47909533
transcript_25381.known	chr17	+	560	4	FSM	ENSMUSG00000034165.17	ENSMUST00000183256.8	560	4	0	0	0	0	multi-exon	FALSE	canonical	1	42	junction_1	1940.06534826937	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAGCAGCCAGGGGCCCA	NA	False	NA	NA	False	NA	NA	NA	47907248	47909637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_47907408_47908344_47908505_47908927_47909065_47909533
transcript_25383.nic	chr17	+	1524	4	NIC	ENSMUSG00000034165.17	novel	336	3	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	3	139	junction_1	1894.33911078948	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTCTTGTGATCCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	47908015	47910614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_47908162_47908344_47908505_47908927_47909065_47909533
transcript_25387.known	chr17	+	2113	7	FSM	ENSMUSG00000034165.17	ENSMUST00000171031.8	2113	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	1830.80687281744	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAAAGGTGGCTCTTGTGA	NA	False	NA	NA	False	AATAAA	-9	NA	47815975	47910608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_47816192_47889633_47889699_47904533_47904778_47905658_47905875_47908344_47908505_47908927_47909065_47909533
transcript_25391.known	chr17	+	2144	7	FSM	ENSMUSG00000023266.12	ENSMUST00000113296.8	2144	7	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_5	11.8988794990677	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTGAGTGCTCTCGTCT	NA	False	NA	NA	False	AATATA	-19	NA	48006122	48015211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_48006198_48008115_48008259_48009497_48009587_48010433_48010621_48012547_48012710_48013494_48013650_48013878
transcript_25393.known	chr17	+	1443	5	FSM	ENSMUSG00000090115.8	ENSMUST00000152724.2	1443	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	46.8794997840207	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGCTTCTATGAAGATCC	NA	False	NA	6	True	TATAAA	-3	NA	47983644	47991981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_47984344_47985640_47985846_47989768_47989878_47990588_47990644_47991606
transcript_25395.known	chr17	+	2054	4	FSM	ENSMUSG00000092558.4	ENSMUST00000024778.3	2054	4	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_2	32.2937902527543	420	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGCTGTAGTTGCCTTCTT	NA	False	NA	NA	False	CATAAA	-16	NA	47922506	47935343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_47922618_47923887_47924043_47929733_47929988_47933809
transcript_25396.known	chr17	+	2168	4	FSM	ENSMUSG00000023984.18	ENSMUST00000130830.2	2168	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	105.093609066711	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTCTACTGCTTTTTATT	NA	False	NA	NA	False	AATAAA	-20	NA	47922522	47962538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_47922618_47923887_47924043_47929733_47929988_47960874
transcript_25398.known	chr17	+	599	3	FSM	ENSMUSG00000023984.18	ENSMUST00000146105.8	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	122	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATAAATGTTTATTGTCCA	NA	False	NA	NA	False	AATAAA	-12	NA	47922513	47961214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_47922618_47923887_47924043_47960874
transcript_25401.known	chr17	-	749	3	FSM	ENSMUSG00000033475.16	ENSMUST00000113302.10	749	3	0	0	0	0	multi-exon	FALSE	canonical	3	3748	junction_1	369	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACTCAAGAGACAGGCATG	NA	False	NA	82	True	AATAAA	-16	NA	47999108	47997570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_47997934_47998112_47998214_47998823
transcript_25402.known	chr17	-	594	3	FSM	ENSMUSG00000033475.16	ENSMUST00000113301.2	594	3	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	2129.5	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTATTTTATTCTTTT	NA	False	NA	-12	True	AATAAA	-15	NA	47998993	47997664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_47997988_47998112_47998214_47998823
transcript_25404.known	chr17	-	1037	2	FSM	ENSMUSG00000033475.16	ENSMUST00000143156.2	1037	2	0	0	0	0	multi-exon	FALSE	canonical	3	4486	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTATTTTATTCTTTT	NA	False	NA	-12	True	AATAAA	-15	NA	47999311	47997664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_47998214_47998823
transcript_25405.known	chr17	+	1388	9	FSM	ENSMUSG00000023987.15	ENSMUST00000024782.12	1388	9	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	162.479181358721	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCTGTTGAGTCATTT	NA	False	NA	16	True	AATAAA	-16	NA	48037766	48045407	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_48037890_48039666_48039827_48040176_48040295_48041018_48041138_48041523_48041724_48043309_48043430_48043885_48044037_48044681_48044781_48045109
transcript_25408.nnic	chr17	+	781	5	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	4511	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	171.057738790152	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCTGTTGAGTCATTT	NA	False	NA	16	True	AATAAA	-16	NA	48042279	48045407	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_48042393_48043309_48043430_48043885_48044037_48044681_48044781_48045109
transcript_25411.nnic	chr17	+	681	4	NNC	ENSMUSG00000023987.15	novel	1388	9	NA	NA	5749	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	164.050805138733	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGCCTGTTGAGTCATTT	NA	False	NA	16	True	AATAAA	-16	NA	48043517	48045407	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_48043651_48043885_48044037_48044681_48044781_48045109
transcript_25414.known	chr17	+	2342	9	FSM	ENSMUSG00000023990.19	ENSMUST00000086932.10	2342	9	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_4	27.2370955683604	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTCCTGGCTCTGCGGT	NA	False	NA	18	True	AGTAAA	-18	NA	48047954	48103344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_48048242_48096889_48097122_48097202_48097458_48097855_48097937_48098950_48099072_48099161_48099219_48099833_48099910_48100585_48100734_48102259
transcript_25415.nic	chr17	+	2358	9	NIC	ENSMUSG00000023990.19	novel	2296	8	NA	NA	760	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	141.519378090069	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATGTTGTCCTGGCTCTGC	NA	False	NA	15	True	AGTAAA	-15	NA	48050587	48103341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_48050894_48096889_48097122_48097202_48097458_48097855_48097937_48098950_48099072_48099161_48099219_48099833_48099910_48100585_48100734_48102259
transcript_25416.known	chr17	-	1371	5	FSM	ENSMUSG00000032717.15	ENSMUST00000035375.14	1371	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	1.78535710713571	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCATCTCCCCAGGACTC	2092	False	NA	-10	True	AATAAA	-14	NA	48144216	48126260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_48127090_48131738_48131967_48135472_48135653_48143868_48143956_48144169
transcript_25417.known	chr17	-	3999	17	FSM	ENSMUSG00000023991.17	ENSMUST00000113265.8	3999	17	0	0	0	0	multi-exon	TRUE	canonical	3	59	junction_11	26.5099480148491	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGTGTGTCACCAAGG	NA	False	NA	-2	True	ATTAAA	-18	NA	48235570	48178057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_48179729_48180028_48180199_48180649_48180717_48182154_48182277_48185559_48185662_48186279_48186357_48186444_48186614_48186764_48186849_48188065_48188154_48188852_48188958_48189208_48189420_48189531_48189680_48191187_48191275_48191694_48191818_48199049_48199146_48215220_48215460_48235130
transcript_25418.nnic	chr17	+	1145	3	NNC	ENSMUSG00000051682.16	novel	513	2	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	0.5	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCAGCTCATACCAGC	NA	False	NA	NA	False	AATAAA	-21	NA	48579425	48582388	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_48579460_48579716_48579847_48581407
transcript_25419.known	chr17	+	513	2	FSM	ENSMUSG00000051682.16	ENSMUST00000153131.2	513	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCTCTACCGAAGCCATCA	NA	False	NA	NA	False	NA	NA	NA	48579466	48581540	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_48579847_48581407
transcript_25420.known	chr17	-	1407	10	FSM	ENSMUSG00000023994.14	ENSMUST00000160319.8	1407	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	15.1053910742547	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACACTGACCTTTTGCAAA	NA	False	NA	-70	True	NA	NA	NA	48716758	48696108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699517_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706097_48707465_48707609_48716653
transcript_25421.nic	chr17	-	1491	10	NIC	ENSMUSG00000023994.14	novel	3653	10	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	15	junction_8	14.6245185633537	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAGTGGTAAAGCCATCC	NA	False	NA	6	True	ATTAAA	-43	NA	48716769	48696032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699517_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706094_48707465_48707609_48716653
transcript_25422.known	chr17	-	3645	10	FSM	ENSMUSG00000023994.14	ENSMUST00000046719.14	3645	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	14.7832070227182	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAGTGACTGGATTTT	NA	False	NA	-15	True	AATAAA	-15	NA	48716793	48693923	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48706009_48706097_48707465_48707609_48716653
transcript_25424.known	chr17	-	3706	9	FSM	ENSMUSG00000023994.14	ENSMUST00000162460.8	3706	9	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_4	12.5492778676703	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTGGATTTTTGGTGTT	NA	False	NA	-8	True	AATAAA	-22	NA	48716934	48693916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699535_48700207_48700314_48700448_48700581_48702677_48702825_48707465_48707609_48716653
transcript_25425.nic	chr17	-	1475	9	NIC	ENSMUSG00000023994.14	novel	1407	10	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_4	13.067134345372	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAGTGGTAAAGCCATCC	NA	False	NA	6	True	ATTAAA	-43	NA	48716837	48696032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_48696371_48698276_48698379_48698903_48699078_48699367_48699517_48700207_48700314_48700448_48700581_48702677_48702825_48707465_48707609_48716653
transcript_25427.known	chr17	+	1324	6	FSM	ENSMUSG00000040771.15	ENSMUST00000167180.8	1324	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	371.627232586634	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAGGTTTGCACACATGA	NA	False	NA	9	True	AATAAA	-17	NA	48717041	48724282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_48717401_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
transcript_25429.known	chr17	+	1135	6	FSM	ENSMUSG00000040771.15	ENSMUST00000046651.7	1135	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	381.26547181721	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATGAACGTCTGTGTTC	NA	False	NA	21	True	AATAAA	-29	NA	48717107	48724294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_48717266_48717855_48717933_48718291_48718437_48721253_48721313_48722248_48722362_48723711
transcript_2543.known	chr1	-	1133	5	FSM	ENSMUSG00000014980.15	ENSMUST00000015124.15	1133	5	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_4	96.4219243740758	546	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTCGTAATCATCCATCA	NA	False	NA	-5	True	AATAAA	-29	NA	152262433	152246485	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_152247035_152247504_152247647_152259012_152259149_152259449_152259532_152262209
transcript_2544.known	chr1	+	1914	4	FSM	ENSMUSG00000008475.14	ENSMUST00000077755.11	1914	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	649.932817040859	539	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGTAACTCTCCAGTTA	NA	False	NA	100	True	AATAAA	-35	NA	152642292	152651348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_152642619_152644611_152644685_152647114_152647292_152650010
transcript_25442.known	chr17	-	1420	3	FSM	ENSMUSG00000040694.5	ENSMUST00000046549.5	1420	3	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	11.5	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGGCCTGTTCTCTTA	NA	False	NA	NA	False	AATAAA	-14	NA	48739958	48726258	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_48726662_48729968_48730534_48739506
transcript_25443.known	chr17	-	317	2	FSM	ENSMUSG00000040694.5	ENSMUST00000233707.2	317	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTATTGCTCCAGGCCTG	NA	False	NA	NA	False	NA	NA	NA	48739646	48738530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_48738708_48739506
transcript_25446.known	chr17	-	956	5	FSM	ENSMUSG00000023995.13	ENSMUST00000024794.12	956	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	2.06155281280883	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCCTGGTGTAAGGTGGA	NA	False	NA	-1	True	AATAAA	-19	NA	48758550	48755462	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_48755829_48756047_48756190_48756910_48757099_48757899_48758090_48758480
transcript_25447.known	chr17	+	2838	9	FSM	ENSMUSG00000043592.16	ENSMUST00000074574.13	2838	9	0	0	0	0	multi-exon	TRUE	canonical	1	5	junction_1	7.66383552798467	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGGTACTTTTGAATGGT	NA	False	NA	NA	False	AATAAA	-26	NA	48761928	48775714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_48762001_48766566_48767013_48767512_48767814_48769203_48769467_48770389_48770492_48770604_48770673_48771469_48771571_48771943_48772058_48774343
transcript_25448.known	chr17	+	2588	11	FSM	ENSMUSG00000064120.15	ENSMUST00000173033.8	2588	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_10	9.4387499172295	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTGGGGACTCTTGTCTG	NA	False	NA	9	True	AATAAA	-25	NA	49735437	49762463	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_49735593_49740197_49740325_49742122_49742291_49746449_49746615_49756127_49756190_49756462_49756575_49756776_49756890_49757289_49757401_49759238_49759360_49759822_49759871_49761057
transcript_25449.known	chr17	+	2646	11	FSM	ENSMUSG00000064120.15	ENSMUST00000024797.16	2646	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_10	7.06328535456412	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGATTGGGGACTCTTGT	NA	False	NA	6	True	AATAAA	-22	NA	49735391	49762460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_49735593_49740197_49740325_49742122_49742291_49746449_49746615_49756127_49756190_49756462_49756575_49756776_49756890_49757289_49757401_49759238_49759360_49759822_49759886_49761057
transcript_25453.known	chr17	-	4029	10	FSM	ENSMUSG00000039316.15	ENSMUST00000044503.14	4029	10	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	9.91071249821234	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATATATTTTTCTTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	50497702	50299284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_50301510_50309659_50309742_50311281_50311386_50343968_50344085_50354324_50354529_50362264_50362656_50393595_50393705_50414097_50414285_50476030_50476188_50497248
transcript_25456.known	chr17	-	2976	11	FSM	ENSMUSG00000010592.10	ENSMUST00000010736.9	2976	11	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_4	74.6324996231534	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATCACTGACTTACTGTCC	NA	False	NA	-5	True	AATAAA	-16	NA	50600664	50586424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_50588340_50590155_50590255_50591265_50591380_50592023_50592075_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
transcript_2546.known	chr1	+	1737	3	FSM	ENSMUSG00000008475.14	ENSMUST00000097536.6	1737	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	15	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTGTAACTCTCCAGTTA	NA	False	NA	100	True	AATAAA	-35	NA	152642292	152651348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_152642619_152644611_152644685_152650010
transcript_25460.nic	chr17	-	2930	10	NIC	ENSMUSG00000010592.10	novel	2976	11	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	158	junction_3	120.807570689102	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTGACTTACTGTCCTG	NA	False	NA	-3	True	AATAAA	-18	NA	50600667	50586422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_50588340_50590155_50590255_50591265_50591380_50593278_50593351_50594555_50594696_50594782_50594847_50595138_50595191_50595641_50595734_50596119_50596267_50600434
transcript_25464.known	chr17	-	2661	13	FSM	ENSMUSG00000023931.6	ENSMUST00000024725.5	2661	13	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_1	9.14998482087387	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATGTCCTGGTTTTGCTG	NA	False	NA	-4	True	ATTAAA	-14	NA	53770349	53705916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_53706148_53707773_53707956_53708462_53708676_53720490_53720699_53728902_53729058_53733239_53733308_53733937_53734022_53744111_53744242_53752772_53752884_53756412_53756594_53758578_53758723_53759588_53759652_53769458
transcript_25467.known	chr17	+	2366	6	FSM	ENSMUSG00000017831.9	ENSMUST00000017975.7	2366	6	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_1	72.5131712173726	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGAGTTTTCTCTGTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	53786261	53814708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_53786637_53790848_53791104_53804554_53804707_53805415_53805539_53807403_53807498_53813341
transcript_25471.nic	chr17	-	2353	9	NIC	ENSMUSG00000023940.15	novel	3628	9	NA	NA	-9	-1268	combination_of_known_junctions	FALSE	canonical	3	16	junction_8	149.294538999255	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTATGTGTGTATGTATG	NA	False	NA	-3	True	AATAAA	-24	NA	53996323	53983081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_53983740_53983934_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53995017_53995149_53996207
transcript_25472.nnic	chr17	-	2251	8	NIC	ENSMUSG00000023940.15	novel	3628	9	NA	NA	-22	-1268	combination_of_known_splicesites	FALSE	canonical	3	13	junction_7	157.427275078925	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTATGTGTGTATGTATG	NA	False	NA	-3	True	AATAAA	-24	NA	53996383	53983081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_53983740_53983934_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53996238
transcript_25475.known	chr17	-	382	3	FSM	ENSMUSG00000023940.15	ENSMUST00000146019.2	382	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	144.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAATTTTGTGTTGTCTTC	NA	False	NA	NA	False	NA	NA	NA	53996306	53994734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_53994887_53995017_53995149_53996207
transcript_25476.known	chr17	-	3628	9	FSM	ENSMUSG00000023940.15	ENSMUST00000024736.14	3628	9	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_7	54.3666660279992	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTTGCCGCTTACTTTT	NA	False	NA	0	True	AATAAA	-30	NA	53996361	53981813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_53983740_53983934_53984125_53985937_53986730_53988472_53988517_53990581_53990659_53994111_53994309_53994738_53994887_53995017_53995149_53996238
transcript_25478.known	chr17	-	3523	17	FSM	ENSMUSG00000024174.10	ENSMUST00000086876.7	3523	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	6.91804705101086	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATTAATAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	56019578	55958950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_55960519_55961766_55961873_55969462_55969555_55971316_55971406_55972647_55972784_55973411_55973618_55976739_55976897_55979830_55979894_55981051_55981141_55994788_55994959_55999721_55999878_56002026_56002318_56005456_56005588_56006991_56007107_56013105_56013153_56017838_56017907_56019539
transcript_2548.known	chr1	+	2596	15	FSM	ENSMUSG00000026480.13	ENSMUST00000027754.7	2596	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	6.91382820210072	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTGCTTGGAGAGAACAC	559	False	NA	NA	False	AATAAA	-14	NA	152683640	152712741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_152683957_152686668_152686752_152692741_152692851_152697266_152697402_152699967_152700076_152701632_152701693_152703168_152703213_152706102_152706245_152706443_152706513_152707364_152707441_152709073_152709097_152709527_152709680_152709819_152709932_152710777_152710956_152711752
transcript_25482.known	chr17	-	1813	5	FSM	ENSMUSG00000024174.10	ENSMUST00000233301.2	1813	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	2.54950975679639	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATTAAAAAAAAATGAATA	NA	False	NA	NA	False	NA	NA	NA	56019628	56004093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_56005588_56006991_56007107_56013105_56013153_56017838_56017907_56019539
transcript_25483.nnic	chr17	-	2207	4	NNC	ENSMUSG00000057835.8	novel	2018	4	NA	NA	257	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	9.67241208569794	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCATTCTCTTGGATAGC	NA	False	NA	NA	False	AATAAA	-16	NA	56185673	56171891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_56173651_56175302_56175364_56175558_56175686_56185413
transcript_25484.known	chr17	-	2018	4	FSM	ENSMUSG00000057835.8	ENSMUST00000079642.8	2018	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	5.43650214343336	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCATTCTCTTGGATAGC	NA	False	NA	NA	False	AATAAA	-16	NA	56185930	56171891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_56173651_56175302_56175364_56175558_56175686_56185859
transcript_25485.known	chr17	+	895	5	FSM	ENSMUSG00000003198.11	ENSMUST00000224379.2	895	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	13.1624465810882	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAATCATGAAGATAAACTCA	NA	False	NA	NA	False	NA	NA	NA	56199092	56204665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_56199187_56199757_56199861_56202820_56202948_56203140_56203202_56204155
transcript_25486.nnic	chr17	+	2329	5	NNC	ENSMUSG00000003198.11	novel	705	4	NA	NA	-100	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	13.1624465810882	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATATTTATGTGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	56199367	56205928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_56199633_56199757_56199861_56202820_56202948_56203140_56203202_56204155
transcript_25487.known	chr17	+	2028	4	FSM	ENSMUSG00000003198.11	ENSMUST00000054780.10	2028	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	17.3781471969828	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATATTTATGTGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	56199119	56205928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_56199187_56202820_56202948_56203140_56203202_56204155
transcript_25488.known	chr17	-	1889	4	FSM	ENSMUSG00000062101.13	ENSMUST00000056147.14	1889	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	5.90668171555645	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATATTTATGTTGT	NA	False	NA	NA	False	AATAAA	-12	NA	56252259	56245380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_56246994_56247928_56247990_56248185_56248313_56252171
transcript_25489.nnic	chr17	+	1402	8	NNC	ENSMUSG00000003208.10	novel	1660	8	NA	NA	-30	-330	at_least_one_novel_splicesite	FALSE	canonical	2	28	junction_2	40.3591023544521	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTCGTGCTGTTTAAAC	239	False	NA	13	True	AATACA	-29	NA	56266068	56274951	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_56266262_56267712_56267785_56269018_56269164_56271129_56271265_56271485_56271668_56272168_56272290_56273507_56273638_56274527
transcript_25491.known	chr17	+	1660	8	FSM	ENSMUSG00000003208.10	ENSMUST00000086869.6	1660	8	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_5	8.99205998963212	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCGTGTTGGAGTCTGCT	344	False	NA	8	True	NA	NA	NA	56266173	56275285	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_56266262_56267712_56267814_56269018_56269164_56271129_56271265_56271485_56271668_56272168_56272290_56273507_56273638_56274527
transcript_25494.nic	chr17	+	970	3	ISM	ENSMUSG00000003208.10	ENSMUST00000233661.2	1601	7	21	5536	21	17	5prime_fragment	FALSE	canonical	3	151	junction_1	1.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAGGATTTGGAAAAAAAAAA	290	False	NA	NA	False	NA	NA	NA	56266119	56269745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_56266262_56267712_56267814_56269018
transcript_25496.known	chr17	+	1748	13	FSM	ENSMUSG00000011589.10	ENSMUST00000011733.9	1748	13	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_12	6.07533721057706	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCTGCACTGGTTCTT	3933	False	NA	6	True	AATAAA	-16	NA	56293510	56303881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_56293654_56294742_56294839_56295123_56295256_56295673_56295776_56297211_56297235_56297418_56297541_56298166_56298377_56300842_56300942_56302356_56302517_56302857_56302938_56303071_56303324_56303420_56303510_56303641
transcript_25499.known	chr17	-	1509	13	FSM	ENSMUSG00000038781.8	ENSMUST00000043785.8	1509	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_8	11.0839598820398	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGTGGCTGTAGGATT	NA	False	NA	-4	True	NA	NA	NA	56312584	56304076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_56304362_56304459_56304535_56304604_56304698_56304777_56304952_56306742_56306809_56306912_56307016_56307086_56307157_56307479_56307615_56307900_56308002_56309011_56309069_56309852_56309976_56310129_56310202_56312429
transcript_255.known	chr1	+	1811	13	FSM	ENSMUSG00000033793.13	ENSMUST00000192698.3	1811	13	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	140.296783640966	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATATAATTAAAGGATTCT	NA	False	NA	-12	True	NA	NA	NA	5153376	5232642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_5153502_5154639_5154787_5159231_5159335_5163585_5163676_5165837_5165952_5168251_5168357_5187612_5187711_5194499_5194693_5203306_5203486_5206034_5206161_5213972_5214075_5220170_5220285_5232327
transcript_25501.nic	chr17	-	1075	6	ISM	ENSMUSG00000038781.8	ENSMUST00000233494.2	1597	12	5312	-5	-1781	0	3prime_fragment	FALSE	canonical	3	21	junction_5	4.54312667664022	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGTGGCTGTAGGATT	NA	False	NA	-4	True	NA	NA	NA	56307261	56304076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_56304362_56304459_56304535_56304604_56304698_56304777_56304952_56306742_56307016_56307086
transcript_25502.nic	chr17	-	1160	5	ISM	ENSMUSG00000038781.8	ENSMUST00000233494.2	1597	12	5298	-5	-1795	0	intron_retention	FALSE	canonical	3	24	junction_4	3.60555127546399	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGTGGCTGTAGGATT	NA	False	NA	-4	True	NA	NA	NA	56307275	56304076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_56304362_56304459_56304535_56304604_56304698_56304777_56304952_56306742
transcript_25503.nnic	chr17	-	808	5	NIC	ENSMUSG00000038781.8	novel	1509	13	NA	NA	-1787	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_4	10.8972473588517	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGTGGCTGTAGGATT	NA	False	NA	-4	True	NA	NA	NA	56307267	56304076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_56304362_56304459_56304535_56304604_56304698_56304777_56304952_56307086
transcript_25506.known	chr17	+	1701	13	FSM	ENSMUSG00000003199.17	ENSMUST00000149441.8	1701	13	0	0	0	0	multi-exon	FALSE	canonical	3	665	junction_1	98.0428973573416	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGAGTACAGTTCATTTC	NA	False	NA	146	True	TTTAAA	-7	NA	56316200	56323790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_56316257_56316329_56316587_56317276_56317514_56317987_56318112_56318617_56318700_56318865_56318963_56319270_56319344_56319415_56319493_56321940_56322110_56322207_56322279_56322470_56322561_56322903_56322997_56323515
transcript_25507.nnic	chr17	+	1309	12	NIC	ENSMUSG00000003199.17	novel	1701	13	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_1	267.709507050626	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGCCCACAGCACAAGCCTG	NA	False	NA	9	True	AATAAA	-9	NA	56316198	56323653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_56316257_56317276_56317514_56317987_56318112_56318617_56318700_56318865_56318963_56319270_56319344_56319415_56319493_56321940_56322110_56322207_56322279_56322470_56322561_56322903_56322997_56323515
transcript_25512.known	chr17	-	2073	10	FSM	ENSMUSG00000003200.11	ENSMUST00000003268.11	2073	10	0	0	0	0	multi-exon	FALSE	canonical	3	585	junction_1	54.5914116159513	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTCCCATCTTCATT	NA	False	NA	-1	True	ATTAAA	-17	NA	56343635	56323749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_56324737_56324843_56324901_56324982_56325108_56325574_56325679_56325803_56325963_56326039_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
transcript_25514.nic	chr17	-	2161	9	NIC	ENSMUSG00000003200.11	novel	2073	10	NA	NA	-11	0	intron_retention	FALSE	canonical	3	585	junction_1	56.6192050014834	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTCCCATCTTCATT	NA	False	NA	-1	True	ATTAAA	-17	NA	56343646	56323749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_56324737_56324843_56324901_56324982_56325108_56325574_56325679_56325803_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
transcript_25516.known	chr17	-	1375	9	FSM	ENSMUSG00000003200.11	ENSMUST00000233803.2	1375	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	231.47678069301	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCAAGCAGAGGCTGGCC	NA	False	NA	NA	False	NA	NA	NA	56343576	56324263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_56324737_56324843_56324901_56325574_56325679_56325803_56325963_56326039_56326174_56326315_56326460_56326925_56326999_56327122_56327192_56343414
transcript_25521.known	chr17	-	3093	1	FSM	ENSMUSG00000003200.11	ENSMUST00000233034.2	3093	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAAAAGAGAGAG	NA	False	NA	NA	False	NA	NA	NA	56343568	56340475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_56340500_56343600
transcript_25522.known	chr17	+	5535	14	FSM	ENSMUSG00000002835.10	ENSMUST00000002914.10	5535	14	0	0	0	0	multi-exon	TRUE	canonical	3	392	junction_3	50.5723455079702	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAGATGAGTGAGGA	NA	False	NA	NA	False	ATTAAA	-11	NA	56347438	56377276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_56347552_56351061_56351113_56353822_56354635_56363420_56363478_56364717_56364921_56365983_56366066_56366257_56366327_56369084_56369312_56369550_56369720_56369810_56369892_56370327_56370421_56371000_56371257_56371973_56372426_56374406
transcript_25527.known	chr17	-	2949	11	FSM	ENSMUSG00000019578.12	ENSMUST00000019722.12	2949	11	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_10	25.0960156200143	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCCGGCTCTTTCTTTTTT	6306	False	NA	NA	False	NA	NA	NA	56382028	56374044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_56375684_56375959_56376109_56376183_56376315_56376393_56376614_56376690_56376776_56377651_56377728_56377887_56377986_56379400_56379530_56379719_56379785_56380072_56380237_56381835
transcript_25537.known	chr17	+	2238	16	FSM	ENSMUSG00000002833.12	ENSMUST00000225843.2	2238	16	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_6	179.285421108974	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAACAGCTTTTATTGG	NA	False	NA	NA	False	TATAAA	-16	NA	56386698	56407598	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403820_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407344
transcript_25539.known	chr17	+	2264	16	FSM	ENSMUSG00000002833.12	ENSMUST00000002911.10	2264	16	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_6	225.638196136105	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAAACAGCTTTTATT	NA	False	NA	NA	False	TATAAA	-14	NA	56386637	56407596	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_56386827_56389099_56389177_56389276_56389416_56400521_56400723_56403016_56403131_56403204_56403277_56403850_56404017_56404087_56404164_56404234_56404527_56404881_56404986_56405483_56405558_56405682_56405754_56405973_56406076_56406176_56406388_56406858_56406986_56407347
transcript_25551.known	chr17	-	1986	9	FSM	ENSMUSG00000011305.12	ENSMUST00000019808.12	1986	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	3.19912097301743	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGGTTTTGGAACTTGGG	9995	False	NA	NA	False	AATAAA	-20	NA	56424596	56418600	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_56419542_56419869_56419984_56420898_56421099_56422092_56422274_56422550_56422634_56423257_56423454_56423828_56423890_56424082_56424198_56424501
transcript_25554.known	chr17	+	2379	2	FSM	ENSMUSG00000044469.9	ENSMUST00000077788.7	2379	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCTGGCTGTCCTGGA	413	False	NA	NA	False	NA	NA	NA	56469476	56480955	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_56469607_56478706
transcript_25558.known	chr17	-	1710	6	FSM	ENSMUSG00000019579.14	ENSMUST00000019723.8	1710	6	0	0	0	0	multi-exon	FALSE	canonical	3	1137	junction_1	57.4505004329814	424	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAACCACCTGAAGCCA	NA	False	NA	-29	True	NA	NA	NA	56490920	56482743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_56484004_56484698_56484772_56485263_56485346_56486363_56486426_56489664_56489716_56490738
transcript_25561.known	chr17	-	3645	8	FSM	ENSMUSG00000024197.11	ENSMUST00000019726.8	3645	8	0	0	0	0	multi-exon	TRUE	canonical	3	548	junction_7	40.8821102534533	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGTAATCTCACCATC	NA	False	NA	NA	False	NA	NA	NA	56597511	56584475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_56587074_56587741_56587868_56588406_56588607_56591132_56591431_56593212_56593296_56593447_56593647_56594793_56594877_56597453
transcript_25565.known	chr17	-	721	3	FSM	ENSMUSG00000073380.3	ENSMUST00000233911.2	721	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTAGTGCCTTCAACCT	2730	False	NA	NA	False	NA	NA	NA	56607266	56601367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_56601665_56604826_56604975_56606990
transcript_25566.known	chr17	+	3586	17	FSM	ENSMUSG00000001228.15	ENSMUST00000001258.15	3586	17	0	0	0	0	multi-exon	TRUE	canonical	3	1413	junction_6	319.856779473251	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	420	False	NA	36	True	AATAAA	-20	NA	56610320	56630486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
transcript_25568.known	chr17	+	3483	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113038.8	3483	17	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_6	505.023262923353	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	499	False	NA	36	True	AATAAA	-20	NA	56610399	56630486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_56610562_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
transcript_25569.known	chr17	+	3391	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113039.9	3391	17	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_1	450.210766613816	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1447	False	NA	36	True	AATAAA	-20	NA	56611347	56630486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620040_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
transcript_2557.nnic	chr1	+	493	4	NNC	ENSMUSG00000042751.15	novel	539	3	NA	NA	7	3522	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	86.5678924313166	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGCGTCCCACATTCTT	NA	False	NA	30	True	NA	NA	NA	152969232	152973865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_152969301_152969782_152969860_152973484_152973537_152973569
transcript_25570.known	chr17	+	3402	17	FSM	ENSMUSG00000001228.15	ENSMUST00000113035.8	3402	17	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_6	590.514232338011	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGCGCACGTCTTTAA	1412	False	NA	36	True	AATAAA	-20	NA	56611312	56630486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_56611394_56612085_56612251_56616336_56616580_56617675_56617837_56619053_56619270_56619863_56619968_56620064_56620252_56622191_56622316_56622398_56622507_56622776_56622882_56624003_56624111_56624990_56625151_56625246_56625385_56627161_56627283_56627396_56627543_56629020_56629126_56629355
transcript_25577.known	chr17	-	3277	21	FSM	ENSMUSG00000042625.17	ENSMUST00000075510.12	3277	21	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_15	52.6718852899723	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCTGCTGCCAGGCATT	NA	False	NA	2	True	AATAAA	-31	NA	56891585	56869938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_56870244_56870361_56870432_56870511_56870625_56871503_56871635_56872218_56872262_56872944_56873083_56873325_56873617_56873878_56874016_56874532_56874625_56875894_56876023_56878209_56878320_56878399_56878550_56881201_56881303_56881902_56881953_56882354_56883013_56883877_56883906_56884842_56884906_56885640_56885845_56885920_56885986_56889983_56890072_56891273
transcript_25578.nic	chr17	-	2645	20	NIC	ENSMUSG00000042625.17	novel	3277	21	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_14	55.588067433553	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCTGCTGCCAGGCATT	NA	False	NA	2	True	AATAAA	-31	NA	56891611	56869938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_56870244_56870361_56870432_56870511_56870625_56871503_56871635_56872218_56872262_56872944_56873083_56873325_56873617_56873878_56874016_56874532_56874625_56875894_56876023_56878209_56878320_56878399_56878550_56881201_56881303_56881902_56881953_56883877_56883906_56884842_56884906_56885640_56885845_56885920_56885986_56889983_56890072_56891273
transcript_25580.nic	chr17	-	2763	19	NIC	ENSMUSG00000042625.17	novel	3277	21	NA	NA	-26	0	intron_retention	FALSE	canonical	3	24	junction_13	56.9141653915985	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTCTGCTGCCAGGCATT	NA	False	NA	2	True	AATAAA	-31	NA	56891611	56869938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_56870432_56870511_56870625_56871503_56871635_56872218_56872262_56872944_56873083_56873325_56873617_56873878_56874016_56874532_56874625_56875894_56876023_56878209_56878320_56878399_56878550_56881201_56881303_56881902_56881953_56883877_56883906_56884842_56884906_56885640_56885845_56885920_56885986_56889983_56890072_56891273
transcript_25583.known	chr17	+	3106	21	FSM	ENSMUSG00000071054.13	ENSMUST00000095224.11	3106	21	0	0	0	0	multi-exon	TRUE	canonical	3	422	junction_6	66.4862955803675	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGACTTTCAACCTCTC	8062	False	NA	35	True	AATAAA	-26	NA	56892058	56913294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_56892351_56895781_56895867_56900689_56900755_56900834_56901042_56902651_56902715_56904787_56904816_56905643_56906221_56906622_56906673_56907337_56907433_56907821_56907972_56908047_56908131_56908226_56908367_56908442_56908532_56909876_56909984_56910531_56910823_56911145_56911284_56911365_56911409_56912283_56912400_56912556_56912658_56912796_56912864_56912975
transcript_25590.known	chr17	-	755	4	FSM	ENSMUSG00000049760.7	ENSMUST00000052832.6	755	4	0	0	0	0	multi-exon	FALSE	canonical	3	1891	junction_3	98.6610358753647	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGTAGCTTGGATAGGAA	NA	False	NA	-32	True	TTTAAA	-27	NA	56916771	56914451	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_56914842_56915637_56915693_56915845_56916024_56916639
transcript_25594.known	chr17	+	383	4	FSM	ENSMUSG00000057863.7	ENSMUST00000080492.7	383	4	0	0	0	0	multi-exon	FALSE	canonical	3	5436	junction_1	2487.77200634535	3051	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTTTGTGTATGTGTGA	NA	False	NA	-1	True	AATAAA	-12	NA	56920415	56921243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_56920449_56920585_56920681_56920906_56921042_56921123
transcript_25596.known	chr17	+	2567	17	FSM	ENSMUSG00000002372.10	ENSMUST00000233319.2	2567	17	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	111.513574706176	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	ATTAAA	-14	NA	56980364	57018764	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_56980412_56993005_56993062_56999520_56999722_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
transcript_25598.known	chr17	+	2373	16	FSM	ENSMUSG00000002372.10	ENSMUST00000002445.10	2373	16	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_2	28.8962896503263	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	ATTAAA	-14	NA	56980357	57018764	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_56980412_56993005_56993062_57003601_57003639_57003717_57003790_57008022_57008089_57008448_57008542_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
transcript_25603.nnic	chr17	+	2316	15	NIC	ENSMUSG00000002372.10	novel	2373	16	NA	NA	28	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_5	98.1330833145292	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCAGACTCTTTTGCACC	NA	False	NA	NA	False	ATTAAA	-14	NA	56980321	57018764	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_56980412_56993005_56993062_57003601_57003639_57003717_57003790_57008022_57008089_57009762_57009891_57012456_57012571_57013861_57013966_57014162_57014239_57014850_57014954_57015170_57015281_57016213_57016335_57017087_57017231_57017590_57017778_57017855
transcript_25609.known	chr17	+	545	4	FSM	ENSMUSG00000002379.8	ENSMUST00000002452.8	545	4	0	0	0	0	multi-exon	FALSE	canonical	3	2627	junction_1	54.2975342186201	2312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCAATGTCTTAAAGGCAGG	NA	False	NA	18	True	AATAAA	-18	NA	57024766	57029137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_57024943_57028034_57028128_57028318_57028442_57028984
transcript_25610.known	chr17	+	493	4	FSM	ENSMUSG00000002379.8	ENSMUST00000233832.2	493	4	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_2	1185.6477835625	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCTTAAAGGCAGGCTTG	NA	False	NA	22	True	AATAAA	-22	NA	57024782	57029141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_57024943_57028034_57028128_57028358_57028442_57028984
transcript_25613.known	chr17	+	376	4	FSM	ENSMUSG00000002379.8	ENSMUST00000233457.2	376	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	1255.16807196841	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCAATGTCTTAAAGGCA	NA	False	NA	16	True	AATAAA	-16	NA	57024786	57029135	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_57024838_57028076_57028128_57028318_57028442_57028984
transcript_25614.known	chr17	+	918	3	FSM	ENSMUSG00000002379.8	ENSMUST00000233233.2	918	3	0	0	0	0	multi-exon	FALSE	canonical	3	2627	junction_1	33.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCAGCCATGGGCTGTGT	NA	False	NA	NA	False	NA	NA	NA	57024797	57028998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_57024943_57028034_57028128_57028318
transcript_25619.known	chr17	-	2226	2	FSM	ENSMUSG00000054723.7	ENSMUST00000067931.7	2226	2	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGACTCTACCTTTTTTC	7568	False	NA	-6	True	AATAAA	-16	NA	57023977	57020935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_57022818_57023633
transcript_2562.nnic	chr1	+	677	3	NNC	ENSMUSG00000042751.15	novel	4626	11	NA	NA	-3157	3522	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	8.5	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGCGTCCCACATTCTT	NA	False	NA	30	True	NA	NA	NA	152966068	152973865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_152966288_152969782_152969860_152973484
transcript_25620.known	chr17	-	1965	2	FSM	ENSMUSG00000054723.7	ENSMUST00000164907.3	1965	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGACTCTACCTTTTTTC	6865	False	NA	-6	True	AATAAA	-16	NA	57024680	57020935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_57022818_57024597
transcript_25621.known	chr17	-	345	2	FSM	ENSMUSG00000054723.7	ENSMUST00000233400.2	345	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCCGGCCAGCCACAGCC	6523	False	NA	NA	False	NA	NA	NA	57025022	57022622	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_57022818_57024872
transcript_25624.known	chr17	+	2025	13	FSM	ENSMUSG00000007603.10	ENSMUST00000007747.10	2025	13	0	0	0	0	multi-exon	TRUE	canonical	3	220	junction_6	33.8230690505755	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTTTATTTTGTTGGTT	9244	False	NA	16	True	AATAAA	-17	NA	57071777	57076841	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075151_57075347_57075414_57075517_57075629_57075805_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
transcript_2563.known	chr1	+	539	3	FSM	ENSMUSG00000042751.15	ENSMUST00000190960.2	539	3	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	72	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGGAAAGAGGCAGTTAAA	NA	False	NA	NA	False	NA	NA	NA	152969225	152970343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_152969301_152969782_152969860_152969956
transcript_25636.known	chr17	+	2749	10	FSM	ENSMUSG00000007603.10	ENSMUST00000233549.2	2749	10	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_2	26.7830792354676	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTGGCTCTCCTTGTGA	9250	False	NA	12	True	NA	NA	NA	57071783	57077093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_57071942_57072524_57072793_57073781_57074289_57074632_57074675_57074782_57074936_57075033_57075903_57076049_57076126_57076249_57076439_57076533_57076663_57076735
transcript_25641.known	chr17	-	3283	17	FSM	ENSMUSG00000024206.16	ENSMUST00000086801.7	3283	17	0	0	0	0	multi-exon	TRUE	canonical	3	178	junction_12	29.2883695986991	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTGTCCGTGTTTGTTC	NA	False	NA	-1	True	NA	NA	NA	57138013	57082896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_57084075_57084431_57084475_57084838_57084993_57086879_57087089_57087754_57087905_57089250_57089349_57090606_57090762_57091299_57091413_57091647_57091767_57092296_57092413_57093608_57093729_57094578_57094761_57110477_57110740_57111325_57111397_57112357_57112448_57115233_57115326_57137882
transcript_25647.nic	chr17	+	2412	12	ISM	ENSMUSG00000024209.10	ENSMUST00000025048.7	2677	14	1638	0	1612	0	3prime_fragment	TRUE	canonical	3	15	junction_6	15.5260378474249	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCTCGCACCCCGAGGT	NA	False	NA	16	True	ATTAAA	-16	NA	57184114	57195904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_57184590_57187450_57187540_57187945_57188067_57189166_57189248_57189540_57189691_57189779_57189987_57190315_57190498_57190626_57190861_57191750_57191969_57192083_57192224_57193440_57193688_57195636
transcript_2566.nnic	chr1	+	422	3	NNC	ENSMUSG00000042751.15	novel	4638	12	NA	NA	282	-133	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	20.5	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGGTGTGGCTTGTTTTCCT	NA	False	NA	8	True	AAGAAA	-20	NA	152969507	152970210	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_152969599_152969782_152969860_152969956
transcript_25662.nnic	chr17	+	705	4	NNC	ENSMUSG00000024209.10	novel	2677	14	NA	NA	8473	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	29.6797723860694	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCTCGCACCCCGAGGT	NA	False	NA	16	True	ATTAAA	-16	NA	57190975	57195904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_57191026_57192083_57192224_57193440_57193688_57195636
transcript_25667.known	chr17	+	983	6	FSM	ENSMUSG00000002660.9	ENSMUST00000002735.9	983	6	0	0	0	0	multi-exon	FALSE	canonical	3	1307	junction_4	119.017645750536	1181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGAAGCACCTTCCATT	NA	False	NA	33	True	ATTAAA	-21	NA	57297304	57303188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_57297514_57297605_57297678_57298293_57298391_57299825_57300014_57300447_57300554_57302877
transcript_2567.nnic	chr1	+	549	3	NNC	ENSMUSG00000042751.15	novel	4638	12	NA	NA	282	3522	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	13	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGCGTCCCACATTCTT	NA	False	NA	30	True	NA	NA	NA	152969507	152973865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_152969599_152969782_152969860_152973484
transcript_25679.known	chr17	+	434	1	FSM	ENSMUSG00000002660.9	ENSMUST00000233845.2	434	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	57297391	57297825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_57297400_57297800
transcript_25681.known	chr17	+	917	4	FSM	ENSMUSG00000002661.15	ENSMUST00000002737.7	917	4	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	15.369522511198	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAACAAAAAACC	371	False	NA	NA	False	NA	NA	NA	57304342	57306322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_57304568_57305388_57305563_57305670_57305796_57305929
transcript_25685.known	chr17	+	736	3	FSM	ENSMUSG00000002661.15	ENSMUST00000074141.14	736	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	221	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAGCAAGCAAAGAAAGA	367	False	NA	NA	False	NA	NA	NA	57304338	57306311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_57304568_57305670_57305796_57305929
transcript_25686.known	chr17	-	1717	13	FSM	ENSMUSG00000002658.10	ENSMUST00000002733.7	1717	13	0	0	0	0	multi-exon	FALSE	canonical	3	510	junction_7	59.552672763977	368	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTGTGCGAGTCATCA	NA	False	NA	-6	True	AATAAA	-13	NA	57318288	57310404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_57310632_57310720_57310812_57310914_57311054_57311121_57311196_57311308_57311429_57311510_57311573_57311665_57311820_57312359_57312545_57313985_57314157_57314712_57314907_57316687_57316761_57317975_57318023_57318108
transcript_25692.nic	chr17	-	1391	8	NIC	ENSMUSG00000002668.9	novel	2521	24	NA	NA	1009	0	combination_of_known_junctions	TRUE	canonical	3	18	junction_2	6.23027499638758	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGTATCTGGGGCTTTC	NA	False	NA	NA	False	AATAAA	-21	NA	57377788	57373054	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_57373642_57373731_57373943_57374048_57374117_57374592_57374701_57374788_57374834_57377112_57377185_57377407_57377449_57377529
transcript_25695.known	chr17	+	778	5	FSM	ENSMUSG00000044279.16	ENSMUST00000169543.8	778	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	66.6520817379322	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTTAGCTGTAAGCTCT	1578	False	NA	NA	False	AATAAA	-30	NA	57369282	57372917	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_57369374_57369594_57369767_57370636_57370699_57372089_57372234_57372608
transcript_25696.known	chr17	+	1194	5	FSM	ENSMUSG00000044279.16	ENSMUST00000071826.10	1194	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	103.136741755787	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGATTTTAGCTGTAA	2794	False	NA	NA	False	AATAAA	-25	NA	57366104	57372912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_57366154_57369140_57369229_57369594_57369767_57370636_57370699_57372089
transcript_25697.known	chr17	+	1206	4	FSM	ENSMUSG00000044279.16	ENSMUST00000097299.10	1206	4	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	33.4099120355355	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTAGCTGTAAGCTCTT	1526	False	NA	NA	False	AATAAA	-31	NA	57369230	57372918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_57369374_57369594_57369767_57370636_57370699_57372089
transcript_25699.known	chr17	-	598	4	FSM	ENSMUSG00000046329.15	ENSMUST00000171528.2	598	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	3.39934634239519	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTTTACCCATCAGTG	NA	False	NA	NA	False	CATAAA	-19	NA	57360582	57354050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_57354337_57359681_57359850_57360240_57360349_57360546
transcript_25700.known	chr17	+	1290	3	FSM	ENSMUSG00000035678.9	ENSMUST00000039490.9	1290	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAGCCTTTTATTATTT	25	False	NA	NA	False	AATAAA	-10	NA	57412324	57414757	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_57412861_57413249_57413287_57414040
transcript_25703.known	chr17	-	2064	17	FSM	ENSMUSG00000005823.10	ENSMUST00000005975.8	2064	17	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_12	32.0784560686764	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAATAAAGAAAAAGTG	NA	False	NA	-59	True	CATAAA	-13	NA	57554689	57541971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550114_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
transcript_25706.known	chr17	-	2405	17	FSM	ENSMUSG00000005823.10	ENSMUST00000233568.2	2405	17	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_12	26.3293443708726	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAAAAAACGATCTGT	NA	False	NA	NA	False	NA	NA	NA	57554672	57541634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_57542367_57542922_57543048_57543155_57543240_57543373_57543424_57543696_57543741_57543870_57544002_57544205_57544324_57544423_57544498_57544850_57544927_57545029_57545164_57549733_57549839_57549940_57550135_57551246_57551369_57552028_57552112_57552294_57552346_57553763_57553884_57554510
transcript_2571.known	chr1	-	1964	2	FSM	ENSMUSG00000073538.11	ENSMUST00000186785.7	1964	2	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	0	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAGAAAAAATATAA	NA	False	NA	NA	False	AATAAA	-5	NA	153283536	153280572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_153282348_153283347
transcript_25712.known	chr17	+	1812	15	FSM	ENSMUSG00000019487.12	ENSMUST00000224152.2	1812	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	142.636490307869	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCCACCAGAGGGGGACGA	NA	False	NA	NA	False	NA	NA	NA	57556547	57570148	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_57556572_57557741_57557858_57557954_57558012_57560261_57560410_57560496_57560560_57561056_57561162_57561259_57561389_57562017_57562165_57562272_57562468_57563859_57564028_57564234_57564345_57568289_57568423_57568639_57568789_57569353_57569473_57569999
transcript_25714.known	chr17	+	2016	14	FSM	ENSMUSG00000019487.12	ENSMUST00000224947.2	2016	14	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_12	68.855048845232	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTGGAGTCTGCACCGC	NA	False	NA	13	True	ATTAAA	-23	NA	57556454	57570427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_57556572_57557741_57557858_57557954_57558012_57560261_57560410_57560496_57560560_57561056_57561162_57561259_57561389_57562017_57562165_57562272_57562468_57564234_57564345_57568289_57568423_57568639_57568789_57569353_57569473_57569999
transcript_25715.known	chr17	+	2224	14	FSM	ENSMUSG00000019487.12	ENSMUST00000019631.11	2224	14	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_12	30.2353686068634	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCCCGTGTGGAATAAATG	NA	False	NA	NA	False	GATAAA	-13	NA	57556481	57570665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_57556572_57557741_57557858_57557954_57558012_57560261_57560410_57560496_57560560_57561056_57561162_57561259_57561389_57562017_57562165_57562272_57562468_57564234_57564345_57568289_57568423_57568639_57568789_57569356_57569473_57569999
transcript_25721.known	chr17	-	4113	7	FSM	ENSMUSG00000024228.13	ENSMUST00000025065.12	4113	7	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	5.17740818900302	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATATGTAGCACATTCTG	NA	False	NA	NA	False	ATTAAA	-18	NA	59320367	59306612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_59309287_59310323_59310524_59313498_59313613_59314618_59314787_59316849_59317440_59318037_59318250_59320212
transcript_25727.nic	chr17	+	2789	19	NIC	ENSMUSG00000000127.16	novel	2973	18	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	108	junction_1	24.9886393940413	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGTATTAGCTAACCACAG	NA	False	NA	4	True	AATAAA	-15	NA	64170972	64446192	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_64171051_64203012_64203279_64214275_64214450_64218459_64218560_64228607_64228792_64230356_64230495_64231053_64231174_64241284_64241408_64248285_64248476_64280059_64280153_64288474_64288682_64298588_64298712_64336284_64336342_64342441_64342558_64344564_64344660_64385846_64385971_64440435_64440591_64444704_64444828_64445869
transcript_2573.known	chr1	+	2092	10	FSM	ENSMUSG00000042708.13	ENSMUST00000042373.12	2092	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	1.36986977843755	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTCTTTCAATTAGTGG	142	False	NA	3	True	ATTAAA	-14	NA	153300907	153328320	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_153301333_153304305_153304456_153308920_153309136_153311508_153311596_153311663_153311883_153313270_153313377_153321543_153321698_153323469_153323721_153324646_153324770_153327958
transcript_25730.known	chr17	-	4740	10	FSM	ENSMUSG00000024083.17	ENSMUST00000172818.8	4740	10	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_6	24	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTGTGTGACCCTATC	NA	False	NA	-3	True	AATAAA	-30	NA	64638911	64587999	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_64590534_64593995_64594118_64594522_64594638_64596927_64597040_64599833_64600020_64604718_64604905_64615616_64616662_64618165_64618367_64619995_64620114_64638790
transcript_25732.known	chr17	-	4488	9	FSM	ENSMUSG00000024083.17	ENSMUST00000172733.2	4488	9	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_5	42.6614580154031	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTCATTTCTAATATTTAA	NA	False	NA	-18	True	AATAAA	-15	NA	64638860	64588014	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_64590534_64593995_64594118_64594522_64594638_64596927_64597040_64599833_64600020_64615616_64616662_64618165_64618367_64619995_64620114_64638790
transcript_25733.known	chr17	-	570	1	FSM	ENSMUSG00000117300.2	ENSMUST00000233888.2	570	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCTCAGGGATGGCGGC	2794	False	NA	NA	False	AAGAAA	-9	NA	65745692	65745122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_65745100_65745700
transcript_25734.known	chr17	-	3473	7	FSM	ENSMUSG00000056515.10	ENSMUST00000070673.9	3473	7	0	0	0	0	multi-exon	TRUE	canonical	3	62	junction_1	10.1775897605147	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGTGTCCTTTCCTCATT	NA	False	NA	0	True	AATAAA	-15	NA	66079747	65958723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_65961499_65974860_65974971_66003265_66003373_66004985_66005058_66024476_66024559_66029002_66029083_66079500
transcript_25735.known	chr17	+	3850	20	FSM	ENSMUSG00000061950.18	ENSMUST00000073104.11	3850	20	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_2	67.7698974676079	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGGAGAAAGGCGTTTGT	NA	False	NA	35	True	AATAAA	-32	NA	66090349	66148921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_66090445_66090618_66090664_66110154_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
transcript_25736.known	chr17	+	3784	20	FSM	ENSMUSG00000061950.18	ENSMUST00000160664.8	3784	20	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	42.2814078706415	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGATGGGAGAAAGGCGT	NA	False	NA	31	True	AATAAA	-28	NA	66090360	66148917	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_66090445_66090618_66090664_66110205_66110291_66110854_66110962_66117532_66117676_66118237_66118385_66120452_66120561_66120682_66120749_66121300_66121460_66122917_66123046_66131254_66131785_66136369_66136543_66137991_66138088_66139948_66140135_66141977_66142140_66142977_66143079_66144678_66144800_66144884_66145020_66145812_66145955_66147851
transcript_25737.known	chr17	-	3811	10	FSM	ENSMUSG00000024096.18	ENSMUST00000024905.11	3811	10	0	0	0	0	multi-exon	FALSE	canonical	1	202	junction_3	142.261973611371	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCTTCTATTGTCCACT	NA	False	NA	NA	False	AATAAA	-31	NA	66191949	66155412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66191672
transcript_25738.known	chr17	-	3799	10	FSM	ENSMUSG00000024096.18	ENSMUST00000166543.10	3799	10	0	0	0	0	multi-exon	FALSE	canonical	1	126	junction_9	189.388163682976	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTTGATTTTTGTACGG	NA	False	NA	NA	False	NA	NA	NA	66192793	66155760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_66157191_66159114_66159239_66159684_66159807_66161086_66161195_66164656_66164789_66165967_66166130_66168250_66168601_66171268_66171728_66174526_66174826_66192180
transcript_2575.known	chr1	-	4561	28	FSM	ENSMUSG00000042699.12	ENSMUST00000186380.7	4561	28	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_24	37.4089841985242	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTGTCATTGATGTTCT	NA	False	NA	-1	True	AATAAA	-18	NA	153363354	153331503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_153332500_153333276_153333478_153333798_153333915_153334005_153334236_153335083_153335212_153335303_153335466_153336023_153336136_153336727_153336889_153338297_153338451_153340085_153340160_153340363_153340459_153340600_153340815_153341422_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786_153353936_153354611_153354725_153356877_153356996_153358487_153358629_153359485_153359619_153363278
transcript_25751.known	chr17	-	443	3	FSM	ENSMUSG00000024096.18	ENSMUST00000233399.2	443	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	331	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCTGAAAGTCCTTCCAA	NA	False	NA	NA	False	NA	NA	NA	66175046	66171686	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_66171728_66174526_66174826_66174943
transcript_25754.nic	chr17	-	835	3	NIC	ENSMUSG00000024096.18	novel	481	2	NA	NA	-202	111	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	319.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAAAGCATAAAGAAGA	NA	False	NA	-95	True	AAAAAG	-37	NA	66191600	66171575	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_66171728_66174526_66174826_66191216
transcript_25757.known	chr17	+	481	2	FSM	ENSMUSG00000117335.2	ENSMUST00000233862.2	481	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCCCTGTGAAAAGGTCGT	NA	False	NA	NA	False	NA	NA	NA	66192887	66194020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_66193026_66193677
transcript_25758.known	chr17	-	4086	5	FSM	ENSMUSG00000024098.7	ENSMUST00000024906.6	4086	5	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	25.0636689253589	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATGTTTTTTATTAATTT	8694	False	NA	1	True	AATAAA	-19	NA	66258221	66230059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_66233462_66236541_66236809_66244795_66244896_66255652_66255810_66258061
transcript_2576.known	chr1	-	2346	19	FSM	ENSMUSG00000042699.12	ENSMUST00000188345.2	2346	19	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_15	20.3910080642558	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAAGTTCCCAAAACTTG	NA	False	NA	NA	False	CATAAA	-29	NA	153363397	153340087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_153340160_153340363_153340459_153340600_153340815_153341422_153341524_153342777_153342935_153344619_153344703_153345345_153345488_153347365_153347558_153347971_153348050_153348146_153348309_153348417_153348508_153348892_153349030_153351408_153351456_153353786_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
transcript_25761.known	chr17	-	1513	8	FSM	ENSMUSG00000034647.16	ENSMUST00000150766.2	1513	8	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	22.2481368171974	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGTTAAAAGAAAATTAAA	NA	False	NA	NA	False	AATACA	-12	NA	66384017	66294039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_66294489_66331070_66331219_66334246_66334390_66338365_66338567_66344487_66344635_66356780_66356929_66359948_66360087_66383878
transcript_25762.known	chr17	-	1403	5	FSM	ENSMUSG00000034647.16	ENSMUST00000129756.8	1403	5	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_2	27.5170401751351	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATCTGTGTGTCTGTAT	NA	False	NA	NA	False	AATAAA	-16	NA	66384084	66343792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_66344635_66349527_66349597_66356780_66356929_66359948_66360087_66383878
transcript_25764.known	chr17	-	943	4	FSM	ENSMUSG00000034647.16	ENSMUST00000135136.8	943	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	25.5734237050888	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATTTTTTAGGAAATTA	NA	False	NA	NA	False	AATAAA	-30	NA	66384034	66344133	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_66344635_66356780_66356929_66359948_66360087_66383878
transcript_25772.known	chr17	-	1697	8	FSM	ENSMUSG00000024099.16	ENSMUST00000143987.9	1697	8	0	0	0	0	multi-exon	FALSE	canonical	3	4006	junction_3	144.496027768297	2331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAGGAGGTAATAGTGCC	5452	False	NA	NA	False	AATAAA	-18	NA	66408554	66385632	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66408409
transcript_2578.nic	chr1	-	761	6	ISM	ENSMUSG00000042699.12	ENSMUST00000188345.2	2346	19	-38	13752	-29	183	5prime_fragment	FALSE	canonical	3	83	junction_2	16.7403703662733	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAGATCCAAGGAGAATA	NA	False	NA	NA	False	NA	NA	NA	153363435	153353839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_153353936_153354611_153354728_153356877_153356996_153358487_153358629_153359485_153359619_153363278
transcript_25781.known	chr17	-	927	9	FSM	ENSMUSG00000024099.16	ENSMUST00000024909.15	927	9	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_8	1803.30633403618	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAAGCTTTATTCGGTTT	5516	False	NA	-11	True	AATAAA	-15	NA	66408490	66386435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_66386583_66387805_66387883_66390392_66390503_66394397_66394567_66396226_66396344_66396425_66396489_66398858_66398925_66407972_66408070_66408409
transcript_25782.known	chr17	+	2905	11	FSM	ENSMUSG00000024101.16	ENSMUST00000072383.14	2905	11	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	29.1082462542833	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	3	True	NA	NA	NA	66418539	66427498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_66418645_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
transcript_25784.known	chr17	+	1831	11	FSM	ENSMUSG00000024101.16	ENSMUST00000116556.4	1831	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	39.5182236442885	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGGGAGCTGTCCTTTT	NA	False	NA	24	True	AATAAA	-32	NA	66418639	66426442	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_66418727_66420857_66421012_66422665_66422778_66422948_66423096_66423254_66423392_66423623_66423757_66423967_66424170_66424258_66424439_66425057_66425217_66425805_66425875_66425991
transcript_25788.known	chr17	+	4141	27	FSM	ENSMUSG00000035842.11	ENSMUST00000224497.2	4141	27	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_22	18.327114778237	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCATGATCAAGTATGAGA	NA	False	NA	28	True	ATTAAA	-23	NA	66430607	66459169	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_66430688_66433167_66433316_66436851_66437098_66437454_66437542_66437674_66437830_66440211_66440258_66441079_66441188_66442816_66442905_66443283_66443490_66445081_66445235_66446022_66446070_66446392_66446473_66447183_66447229_66447345_66447414_66450182_66450222_66450420_66450542_66450644_66450768_66451172_66451286_66454662_66454736_66454986_66455091_66455648_66455799_66456025_66456095_66456207_66456309_66456962_66457048_66457325_66457405_66457568_66457724_66457797
transcript_2579.known	chr1	-	1735	12	FSM	ENSMUSG00000042684.9	ENSMUST00000041874.9	1735	12	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_4	13.2309429459759	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTTATTGTCTTAATCTT	NA	False	NA	-16	True	AATAAA	-20	NA	153425791	153378760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_153379304_153384857_153384898_153388291_153388377_153390985_153391033_153391147_153391297_153394628_153394722_153400092_153400169_153403810_153403869_153411617_153411706_153413173_153413248_153421008_153421093_153425393
transcript_25791.nnic	chr17	-	1062	4	NNC	ENSMUSG00000052105.18	novel	2423	6	NA	NA	11897	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	102.924999662645	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTGAAATTGTAGTACAGT	NA	False	NA	-5	True	AATAAA	-19	NA	66669762	66654960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_66655517_66661117_66661373_66665016_66665185_66669679
transcript_25797.nnic	chr17	-	907	5	NNC	ENSMUSG00000100572.2	novel	764	3	NA	NA	-18	2456	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	15.6923548264752	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCACAGCCAATTCATTAT	NA	False	NA	1	True	ATTAAA	-19	NA	69584221	69579900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_69580339_69582162_69582295_69582786_69582887_69583120_69583191_69584054
transcript_2580.nnic	chr1	-	1390	12	NNC	ENSMUSG00000042684.9	novel	1735	12	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_11	33.2655233135196	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTTATTGTCTTAATCTT	NA	False	NA	-16	True	AATAAA	-20	NA	153425483	153378760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_153379304_153384857_153384898_153388291_153388377_153390985_153391033_153391147_153391297_153394628_153394722_153400092_153400169_153403810_153403869_153411617_153411706_153413173_153413248_153421008_153421093_153425430
transcript_2581.known	chr1	+	2339	5	FSM	ENSMUSG00000026475.8	ENSMUST00000027748.8	2339	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCAGGACAGTATGGAT	NA	False	NA	NA	False	AATAAA	-23	NA	153616094	153621214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_153616259_153616608_153616720_153617365_153617428_153617708_153617876_153619379
transcript_25816.known	chr17	-	764	3	FSM	ENSMUSG00000100572.2	ENSMUST00000187090.2	764	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	7	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCCAGAGGAACGTATG	NA	False	NA	NA	False	NA	NA	NA	69584203	69582356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_69582902_69583120_69583191_69584054
transcript_25817.known	chr17	+	3743	3	FSM	ENSMUSG00000049672.16	ENSMUST00000112674.8	3743	3	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	58	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTTTTGTATTTGTGTT	NA	False	NA	NA	False	AAAACA	-43	NA	69690044	69697745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_69690265_69692415_69692500_69694306
transcript_25818.known	chr17	+	3625	3	FSM	ENSMUSG00000049672.16	ENSMUST00000062369.14	3625	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	68.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTTTTTGTATTTGTGTT	NA	False	NA	NA	False	AAAACA	-43	NA	69690313	69697745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_69690416_69692415_69692500_69694306
transcript_2582.known	chr1	+	2792	7	FSM	ENSMUSG00000026473.17	ENSMUST00000086199.12	2792	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	27.7213315376845	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTATTTCATTCCTTCTT	NA	False	NA	87	True	NA	NA	NA	153775689	153785469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_153775806_153778679_153778859_153780282_153780445_153782094_153782242_153782765_153782894_153783031_153783232_153783609
transcript_25821.nnic	chr17	-	917	3	Antisense	novelGene_ENSMUSG00000003279.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	4	junction_2	2.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACTGTTTGGGGGCAAAT	NA	False	NA	NA	False	AATAAA	-21	NA	71130810	71125664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr17_-_71125929_71126393_71126694_71130457
transcript_25823.known	chr17	+	385	2	FSM	ENSMUSG00000093622.2	ENSMUST00000175668.2	385	2	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATTAGAAAATTTTAAATAAA	280	False	NA	-4	True	ATTAAA	-8	NA	71141658	71143039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_71141798_71142793
transcript_25828.known	chr17	-	1455	3	FSM	ENSMUSG00000047407.18	ENSMUST00000186358.6	1455	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	139.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAATGAAGAGCATTTTC	NA	False	NA	78	True	AATAAA	-20	NA	71158064	71151205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_71152236_71153166_71153394_71157866
transcript_2583.known	chr1	+	4589	8	FSM	ENSMUSG00000026470.15	ENSMUST00000027743.13	4589	8	0	0	0	0	multi-exon	TRUE	canonical	3	152	junction_7	29.3257565972304	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGATGAGATTGGTCTGCTG	NA	False	NA	NA	False	TATAAA	-19	NA	155034460	155081405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_155034674_155049731_155049902_155053599_155053695_155063523_155063587_155067174_155067301_155068964_155069072_155073086_155073182_155077685
transcript_25830.nic	chr17	-	1459	3	NIC	ENSMUSG00000047407.18	novel	1714	3	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	428.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAATGAAGAGCATTTTC	NA	False	NA	78	True	AATAAA	-20	NA	71156811	71151205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_71152268_71153166_71153394_71156641
transcript_25831.known	chr17	-	1631	3	FSM	ENSMUSG00000047407.18	ENSMUST00000059775.15	1631	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_2	253.5	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGAGCATTTTCTTGAAG	NA	False	NA	84	True	AATAAA	-26	NA	71158202	71151199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_71152268_71153166_71153394_71157866
transcript_25833.known	chr17	-	1388	3	FSM	ENSMUSG00000047407.18	ENSMUST00000118283.8	1388	3	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	292	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGCAATGAAGAGCATTTTC	NA	False	NA	78	True	AATAAA	-20	NA	71160541	71151205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_71152268_71153166_71153394_71160442
transcript_25837.known	chr17	+	473	1	FSM	ENSMUSG00000100865.3	ENSMUST00000184151.3	473	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	32	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	242	False	NA	NA	False	AATAAA	-15	NA	71182834	71183307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_71182800_71183300
transcript_25840.known	chr17	-	2143	4	FSM	ENSMUSG00000034868.10	ENSMUST00000038446.10	2143	4	0	0	0	0	multi-exon	FALSE	canonical	3	1955	junction_2	187.919013289118	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTTTGAGGTCTATGGC	3044	False	NA	NA	False	NA	NA	NA	71297885	71280127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_71281492_71282453_71282616_71284042_71284242_71297467
transcript_25844.known	chr17	-	1937	4	FSM	ENSMUSG00000024048.16	ENSMUST00000148960.8	1937	4	0	0	0	0	multi-exon	FALSE	canonical	3	2551	junction_2	294.524475496803	2363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAGTTGTCATGTTAAT	1927	False	NA	NA	False	TATAAA	-26	NA	71309549	71300650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71309102
transcript_25845.known	chr17	-	804	4	FSM	ENSMUSG00000024048.16	ENSMUST00000123686.8	804	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	1386.16072500831	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGCCCAATGCATGCCC	1603	False	NA	NA	False	NA	NA	NA	71309873	71301543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_71301780_71303104_71303267_71303691_71303891_71309666
transcript_25847.known	chr17	-	1335	3	FSM	ENSMUSG00000024048.16	ENSMUST00000126529.2	1335	3	0	0	0	0	multi-exon	FALSE	canonical	3	3116	junction_2	53	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTAGTTGTTTAGCGTTA	2316	False	NA	-19	True	ATTAAA	-14	NA	71309160	71301288	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_71301780_71303104_71303891_71309102
transcript_25848.known	chr17	-	3873	8	FSM	ENSMUSG00000024053.12	ENSMUST00000232777.2	3873	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6.13787173112595	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTCCTTTTCTGTATTT	NA	False	NA	-7	True	AATAAA	-15	NA	71617954	71559168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_71560089_71562113_71562210_71562974_71563008_71563318_71563688_71580368_71582283_71587668_71587845_71617143_71617267_71617712
transcript_25849.nnic	chr17	-	1311	4	NNC	ENSMUSG00000024053.12	novel	3939	8	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	6.59966329107444	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCCTTTTCTGTATTTGG	NA	False	NA	-5	True	AATAAA	-17	NA	71563382	71559166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_71560089_71562113_71562243_71562974_71563008_71563155
transcript_2585.known	chr1	+	5592	8	FSM	ENSMUSG00000033701.14	ENSMUST00000035560.9	5592	8	0	0	0	0	multi-exon	TRUE	canonical	3	134	junction_7	98.5478232605254	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTTGGCCAAATGTTTT	NA	False	NA	NA	False	AATAAA	-23	NA	155433867	155567076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155477199_155477283_155491612_155491719_155500614_155500705_155552949_155552981_155562694
transcript_25850.known	chr17	-	3939	8	FSM	ENSMUSG00000024053.12	ENSMUST00000233057.2	3939	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	6.04405594323034	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCCTTTTCTGTATTTGG	NA	False	NA	-5	True	AATAAA	-17	NA	71617985	71559166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_71560089_71562113_71562243_71562974_71563008_71563318_71563688_71580368_71582283_71587668_71587845_71617143_71617267_71617712
transcript_25852.known	chr17	-	2201	17	FSM	ENSMUSG00000024056.11	ENSMUST00000024851.10	2201	17	0	0	0	0	multi-exon	TRUE	canonical	3	248	junction_10	48.8427003246135	245	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCCCCTCCCATTTCTG	NA	False	NA	-11	True	AATAAA	-19	NA	71833852	71803094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_71803349_71806261_71806365_71807266_71807398_71808503_71808597_71811760_71811851_71814254_71814408_71815562_71815769_71818339_71818485_71819387_71819495_71821183_71821278_71824538_71824629_71825732_71825836_71827754_71827928_71828022_71828147_71830576_71830655_71832627_71832738_71833705
transcript_25859.nnic	chr17	-	1387	4	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	34.8807492274273	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905764	71895551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_71895980_71897482_71897518_71898852_71898943_71904930
transcript_25860.nnic	chr17	-	1171	4	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	34.8807492274273	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905762	71895551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_71895980_71897482_71897518_71898852_71898943_71905144
transcript_25861.known	chr17	-	781	3	FSM	ENSMUSG00000085492.8	ENSMUST00000143828.2	781	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	30	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905248	71895551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_71895980_71897482_71897518_71904930
transcript_25862.nnic	chr17	-	1083	3	NNC	ENSMUSG00000085492.8	novel	781	3	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_2	31	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTATGTATTTTTTAA	NA	False	NA	-15	True	AATAAA	-17	NA	71905764	71895551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_71895980_71897482_71897518_71905144
transcript_25865.known	chr17	+	3450	18	FSM	ENSMUSG00000041057.11	ENSMUST00000047086.10	3450	18	0	0	0	0	multi-exon	FALSE	canonical	3	1341	junction_7	117.232918130641	411	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTGTCTCGTGGTGTATA	NA	False	NA	18	True	AATAAA	-18	NA	71923209	71966026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955767_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
transcript_25871.known	chr17	+	2410	19	FSM	ENSMUSG00000041057.11	ENSMUST00000234560.2	2410	19	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_12	495.036013155596	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAATTCCCACACTTCCT	NA	False	NA	-89	True	AAAACA	-29	NA	71922889	71964784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_71922950_71923063_71923481_71932347_71932486_71933767_71933890_71937155_71937277_71938999_71939137_71940618_71940722_71943551_71943617_71945303_71945476_71947228_71947316_71948281_71948414_71949699_71949829_71955771_71955855_71957011_71957044_71957562_71957627_71959775_71959890_71960447_71960518_71964335_71964386_71964470
transcript_25872.known	chr17	+	3120	3	FSM	ENSMUSG00000039770.7	ENSMUST00000045174.7	3120	3	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_1	49	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATTCA	745	False	NA	NA	False	NA	NA	NA	73143447	73158190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_73143787_73153273_73153439_73155574
transcript_25874.known	chr17	+	2419	3	FSM	ENSMUSG00000039770.7	ENSMUST00000233210.2	2419	3	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	120.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGGTACAGAACTGCTACT	1605	False	NA	8	True	AATAAA	-17	NA	73144307	73157432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_73144704_73153273_73153439_73155574
transcript_25876.known	chr17	+	704	3	FSM	ENSMUSG00000039770.7	ENSMUST00000233886.2	704	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	156.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTCCTTCACTGAAAACAAA	1828	False	NA	NA	False	GATAAA	-17	NA	73144530	73155829	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_73144815_73153273_73153439_73155574
transcript_25877.known	chr17	+	3069	3	FSM	ENSMUSG00000024063.14	ENSMUST00000024857.14	3069	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	4	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTTGGGTTCCTTCC	NA	False	NA	10	True	AATAAA	-19	NA	73225299	73248942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_73225574_73228182_73228286_73246250
transcript_25878.known	chr17	+	4467	6	FSM	ENSMUSG00000054469.15	ENSMUST00000067545.8	4467	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	24.2866218317822	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTGTGATTCTGTTTTT	NA	False	NA	16	True	AATAAA	-26	NA	73414988	73550363	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_73415173_73468817_73468987_73476490_73476690_73494869_73495017_73503673_73503791_73546712
transcript_2588.known	chr1	+	993	4	FSM	ENSMUSG00000033701.14	ENSMUST00000080138.13	993	4	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_3	63.2525800966956	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTT	NA	False	NA	15	True	NA	NA	NA	155433865	155448034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155447943
transcript_25882.nic	chr17	-	1514	10	NIC	ENSMUSG00000058704.10	novel	3163	9	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	80.0302411977675	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTGATTTAAACTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	74602518	74507696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_74508321_74509255_74509361_74524021_74524099_74532426_74532570_74548899_74549012_74551969_74552083_74562222_74562292_74565418_74565501_74601686_74601765_74602407
transcript_25884.known	chr17	-	3163	9	FSM	ENSMUSG00000058704.10	ENSMUST00000233514.3	3163	9	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_3	25.6502923959942	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTTTGTTTGTTTATTTG	NA	False	NA	NA	False	ATTAAA	-35	NA	74601858	74506030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_74508321_74509255_74509361_74524021_74524099_74532426_74532570_74548899_74549012_74551969_74552083_74562222_74562292_74565418_74565501_74601686
transcript_25886.known	chr17	-	1210	7	FSM	ENSMUSG00000058704.10	ENSMUST00000232989.2	1210	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	104.977378515564	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTGATTTAAACTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	74601796	74507696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_74508321_74509255_74509361_74524021_74524099_74532426_74532570_74562222_74562292_74565418_74565501_74601686
transcript_25887.known	chr17	-	622	5	FSM	ENSMUSG00000024067.15	ENSMUST00000112571.5	622	5	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_4	1057.76707620345	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTAAGAACCTTCAGGACCA	NA	False	NA	NA	False	NA	NA	NA	74623403	74606650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038_74623112_74623214
transcript_25888.known	chr17	-	734	5	FSM	ENSMUSG00000024067.15	ENSMUST00000233581.2	734	5	0	0	0	0	multi-exon	FALSE	canonical	3	1923	junction_4	306.562391692132	927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGTTGTATATGACAAGT	NA	False	NA	-10	True	AATAAA	-24	NA	74623458	74606468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038_74623112_74623339
transcript_25889.known	chr17	-	694	4	FSM	ENSMUSG00000024067.15	ENSMUST00000232687.2	694	4	0	0	0	0	multi-exon	FALSE	canonical	3	2414	junction_1	149.934059580278	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTATAGTTGTTGTATA	NA	False	NA	-18	True	AATAAA	-16	NA	74623198	74606476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_74606820_74614714_74614858_74622896_74622945_74623038
transcript_2589.known	chr1	+	1255	4	FSM	ENSMUSG00000033701.14	ENSMUST00000097529.5	1255	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	164.081280671095	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCCCGGAGATAAGTGTT	NA	False	NA	6	True	NA	NA	NA	155433871	155463544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_155434606_155440402_155440468_155443330_155443428_155463185
transcript_25890.known	chr17	-	512	4	FSM	ENSMUSG00000024067.15	ENSMUST00000233187.2	512	4	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	1032.98047738893	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTATAGTTGTTGTA	NA	False	NA	-20	True	AATAAA	-14	NA	74623389	74606478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_74606820_74622896_74622945_74623038_74623112_74623339
transcript_25892.known	chr17	+	2148	14	FSM	ENSMUSG00000024069.15	ENSMUST00000024870.9	2148	14	0	0	0	0	multi-exon	TRUE	canonical	3	152	junction_5	21.3572043468894	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCATTTACAATCGTAGTA	NA	False	NA	NA	False	AATAAA	-23	NA	74702602	74731216	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_74702664_74708906_74708994_74710998_74711084_74712679_74712723_74714215_74714282_74715840_74715922_74716347_74716384_74717328_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
transcript_25897.known	chr17	+	1938	14	FSM	ENSMUSG00000024069.15	ENSMUST00000179074.9	1938	14	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	50.5571327177388	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGTGAGGTATATTCTACT	NA	False	NA	9	True	AATAAA	-22	NA	74702615	74731004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_74702664_74708906_74708994_74710998_74711084_74712679_74712723_74714200_74714282_74715840_74715922_74716347_74716384_74717328_74717424_74719268_74719318_74719601_74719722_74722614_74722718_74725614_74725663_74726526_74726596_74730011
transcript_25898.nic	chr17	+	723	4	ISM	ENSMUSG00000024072.10	ENSMUST00000234448.2	1082	6	4035	0	43	0	3prime_fragment	FALSE	canonical	3	423	junction_2	44.5645599103144	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTGTCAATATTCACCT	NA	False	NA	6	True	AATAAA	-22	NA	74800965	74806367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_74801095_74803584_74803663_74805303_74805418_74805965
transcript_25899.nic	chr17	+	1311	4	ISM	ENSMUSG00000024072.10	ENSMUST00000234432.2	1991	7	4421	0	43	0	3prime_fragment	FALSE	canonical	3	423	junction_2	44.5645599103144	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTTTTACAATACCT	NA	False	NA	5	True	AATAAA	-17	NA	74800965	74806955	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_74801095_74803584_74803663_74805303_74805418_74805965
transcript_25900.known	chr17	+	2133	6	FSM	ENSMUSG00000024072.10	ENSMUST00000024873.7	2133	6	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_2	44.687358391384	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAAACCAAACAGGTA	NA	False	NA	NA	False	NA	NA	NA	74796487	74807272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_74796790_74799340_74799501_74800922_74801095_74803584_74803663_74805303_74805418_74805965
transcript_25901.nnic	chr17	-	717	5	NNC	ENSMUSG00000117358.2	novel	1389	4	NA	NA	212	-3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	6.36396103067893	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGCCATTGGTCTCAGT	NA	False	NA	-8	True	AATAAA	-11	NA	74834427	74826662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_74826911_74828104_74828278_74828357_74828483_74830509_74830574_74834320
transcript_25902.nnic	chr17	-	676	4	NNC	ENSMUSG00000117358.2	novel	1389	4	NA	NA	212	-1230	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	7.07106781186548	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTCTGTAGGTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	74834427	74827897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_74828278_74828357_74828483_74830509_74830574_74834320
transcript_25903.nnic	chr17	-	422	3	NNC	ENSMUSG00000117358.2	novel	327	3	NA	NA	212	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	48.5	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCATTGGTCTCAGTGTT	NA	False	NA	-5	True	AATAAA	-14	NA	74834427	74826659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_74826911_74830509_74830574_74834320
transcript_25905.nnic	chr17	+	2725	21	NNC	ENSMUSG00000024078.8	novel	2838	20	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	36.5724964966845	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTGTGATGTTCTCA	NA	False	NA	10	True	AATAAA	-21	NA	75024736	75170565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_75024780_75024882_75025007_75025628_75025807_75028515_75028646_75031612_75031754_75036877_75036981_75046592_75046758_75049912_75050047_75054646_75054760_75058056_75058124_75077237_75077352_75084638_75084735_75087777_75087901_75106178_75106407_75136486_75136586_75142327_75142381_75147293_75147460_75163403_75163602_75165003_75165116_75169040_75169142_75170328
transcript_25906.known	chr17	+	2651	20	FSM	ENSMUSG00000024078.8	ENSMUST00000234568.2	2651	20	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_19	29.4919116570221	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTTATTTTGTGATGTT	NA	False	NA	6	True	AATAAA	-17	NA	75024906	75170561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_75025007_75025628_75025807_75028515_75028646_75031612_75031754_75036877_75036981_75046592_75046758_75049912_75050047_75054646_75054760_75058056_75058124_75077237_75077352_75084638_75084735_75087777_75087901_75106178_75106407_75136486_75136586_75142327_75142381_75147293_75147460_75163403_75163602_75165003_75165116_75169040_75169142_75170331
transcript_2591.known	chr1	-	2433	13	FSM	ENSMUSG00000033684.15	ENSMUST00000194632.2	2433	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	5.99247212944893	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGAACGTGTTTGACTTG	NA	False	NA	-5	True	AATAAA	-19	NA	155688590	155653907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_155654598_155655463_155655685_155657020_155657201_155658270_155658419_155659148_155659272_155662539_155662670_155665043_155665179_155666726_155666873_155667939_155668031_155670291_155670395_155671096_155671143_155679442_155679544_155688271
transcript_25911.known	chr17	+	644	4	FSM	ENSMUSG00000024078.8	ENSMUST00000234751.2	644	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	63.6605581711837	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCTGAGGGTTAAGAAGAG	NA	False	NA	NA	False	NA	NA	NA	75024756	75030668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_75025007_75025628_75025807_75028515_75028646_75030582
transcript_25914.known	chr17	-	2817	8	FSM	ENSMUSG00000002017.11	ENSMUST00000112507.4	2817	8	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	28.1765570527511	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGGAGTTTTCTTTTA	NA	False	NA	-1	True	AATAAA	-22	NA	75858941	75844080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_75845857_75845941_75846110_75846395_75846513_75847105_75847187_75848190_75848376_75851742_75851878_75854605_75854755_75858735
transcript_25917.known	chr17	-	2041	9	FSM	ENSMUSG00000056121.17	ENSMUST00000112487.3	2041	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	124.244718197596	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGAGTCTTGAGTTTTT	NA	False	NA	-6	True	AATAAA	-13	NA	78725581	78685313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_78686175_78689036_78689103_78692172_78692249_78694419_78694501_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
transcript_25918.nnic	chr17	-	1613	8	NIC	ENSMUSG00000056121.17	novel	1939	8	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	1	8	junction_1	98.8728311251067	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGAGTCTTGAGTTTTT	NA	False	NA	-6	True	AATAAA	-13	NA	78725550	78685313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_78685859_78689036_78689103_78692172_78692249_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
transcript_2592.known	chr1	-	2723	11	FSM	ENSMUSG00000026466.17	ENSMUST00000136331.8	2723	11	0	0	0	0	multi-exon	FALSE	canonical	2	47	junction_4	24.0865107477194	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTGGGTTTTCTGCCACC	NA	False	NA	NA	False	NA	NA	NA	155912226	155881979	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_155883456_155889063_155889121_155893256_155893326_155893963_155894006_155895713_155895770_155898045_155898127_155898894_155898934_155906132_155906178_155907159_155907220_155909471_155909547_155911503
transcript_25921.known	chr17	-	1939	8	FSM	ENSMUSG00000056121.17	ENSMUST00000070039.14	1939	8	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_3	15.727267365169	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGAGTCTTGAGTTTTT	NA	False	NA	-6	True	AATAAA	-13	NA	78725560	78685313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_78686175_78689036_78689103_78692172_78692249_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
transcript_25924.nic	chr17	-	1169	6	ISM	ENSMUSG00000056121.17	ENSMUST00000070039.14	1939	8	10	6692	10	-6691	5prime_fragment	FALSE	canonical	3	258	junction_1	18.0731845561318	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCGAGTTGAGTGTTGTT	NA	False	NA	NA	False	AGTAAA	-21	NA	78725550	78692005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_78692249_78708058_78708328_78710168_78710311_78712156_78712274_78720292_78720402_78725261
transcript_25925.known	chr17	+	461	1	FSM	ENSMUSG00000117192.2	ENSMUST00000233688.2	461	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCATGCAAGCTGTCCAC	7434	False	NA	NA	False	AAGAAA	-30	NA	79059683	79060144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_79059700_79060100
transcript_25926.known	chr17	+	4134	10	FSM	ENSMUSG00000050668.11	ENSMUST00000170759.3	4134	10	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_6	15.3405779986718	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGTGTATGTGTGTGT	8852	False	NA	NA	False	TTTAAA	-7	NA	79143017	79155737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_79143108_79144222_79144350_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541_79149659_79151247_79151330_79152572
transcript_25928.nic	chr17	+	1107	9	NIC	ENSMUSG00000050668.11	novel	4134	10	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	40.2086355774478	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACAAGTGATGTGGCATT	8802	False	NA	8	True	AATACA	-20	NA	79142967	79152787	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_79143108_79145259_79145332_79146415_79146643_79147506_79147549_79148391_79148513_79148647_79148739_79149541_79149659_79151247_79151330_79152572
transcript_25929.known	chr17	-	4313	16	FSM	ENSMUSG00000024079.5	ENSMUST00000024884.5	4313	16	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_8	9.77525219907679	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATAAATCTCTCCTCTCT	NA	False	NA	NA	False	AATAAA	-5	NA	79190002	79159992	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_79162691_79162771_79162829_79163995_79164098_79165929_79166062_79171267_79171449_79172730_79172851_79173743_79173867_79176185_79176237_79176904_79176940_79177915_79177965_79178082_79178163_79178577_79178699_79181371_79181509_79183610_79183732_79185570_79185703_79189828
transcript_2593.known	chr1	-	4234	10	FSM	ENSMUSG00000026466.17	ENSMUST00000097527.10	4234	10	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	20.1935083078146	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCTGTATGTTATAAACTT	NA	False	NA	NA	False	AATAAA	-19	NA	155912173	155880359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_155883456_155889063_155889121_155893256_155893326_155893963_155894006_155898045_155898127_155898894_155898934_155906132_155906178_155907159_155907220_155909471_155909547_155911503
transcript_25930.known	chr17	-	704	4	FSM	ENSMUSG00000024079.5	ENSMUST00000171852.2	704	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	9.80929264637478	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTTCCTCTTTCCATCT	NA	False	NA	NA	False	AGTAAA	-26	NA	79189977	79181206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_79181509_79183610_79183732_79185570_79185703_79189828
transcript_25932.known	chr17	-	839	7	FSM	ENSMUSG00000038045.15	ENSMUST00000042683.7	839	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	86.9770084562581	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACAGAGCTTCTGTTCCCT	NA	False	NA	NA	False	NA	NA	NA	79214328	79192494	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971_79202099_79204986_79205077_79212937_79213051_79214222
transcript_25938.nnic	chr17	-	869	5	NNC	ENSMUSG00000038045.15	novel	764	5	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	82.6661206299171	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79202569	79192325	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971_79202099_79202399
transcript_25939.known	chr17	-	764	5	FSM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	54.3570372628973	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79202529	79192325	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971_79202099_79202464
transcript_25945.nic	chr17	-	1312	4	ISM	ENSMUSG00000038045.15	ENSMUST00000146474.8	764	5	-182	0	-182	0	intron_retention	FALSE	canonical	3	141	junction_3	32.273139846559	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAATTGGAACATTGCTG	NA	False	NA	-16	True	ATTAAA	-16	NA	79202711	79192325	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_79192646_79196359_79196517_79198274_79198370_79201971
transcript_25948.nnic	chr17	-	524	3	NIC	ENSMUSG00000038045.15	novel	764	5	NA	NA	0	12	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	21.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGCTGTCAGTGTGTTGT	NA	False	NA	-4	True	ATTAAA	-28	NA	79202529	79192313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_79192646_79201971_79202099_79202464
transcript_25950.nnic	chr17	-	948	2	NIC	ENSMUSG00000038045.15	novel	764	5	NA	NA	-58	12	intron_retention	FALSE	canonical	3	29	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGCTGTCAGTGTGTTGT	NA	False	NA	-4	True	ATTAAA	-28	NA	79202587	79192313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_79192646_79201971
transcript_25953.known	chr17	-	4070	16	FSM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_13	57.736720454914	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTAGTGTCTATTAGCAT	NA	False	NA	-3	True	ATTAAA	-40	NA	79244495	79226434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
transcript_25954.known	chr17	-	2920	16	FSM	ENSMUSG00000024081.10	ENSMUST00000233484.2	2920	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	165.681810173061	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTAGTTTTTGCTAGTCA	NA	False	NA	-6	True	AATAAA	-16	NA	79244470	79227273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_79227447_79227977_79228060_79228150_79228210_79229063_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242289_79243497_79244303
transcript_25962.nic	chr17	-	2949	13	ISM	ENSMUSG00000024081.10	ENSMUST00000024885.10	4070	16	-31	2628	-31	545	5prime_fragment	FALSE	canonical	3	465	junction_10	53.7154927992536	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAAAATACATGCGCTCT	NA	False	NA	22	True	NA	NA	NA	79244526	79229062	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_79229151_79229558_79229744_79229942_79230001_79230664_79230766_79231874_79231942_79233342_79233412_79233511_79233615_79234297_79234352_79236706_79236796_79238738_79238926_79239538_79239771_79242003_79243497_79244303
transcript_25967.known	chr17	+	602	5	FSM	ENSMUSG00000062691.11	ENSMUST00000180077.7	602	5	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_1	395.694563394546	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTGTGGGTCTGCAG	NA	False	NA	NA	False	AATAAA	-22	NA	79223928	79227735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_79223955_79225785_79225902_79226484_79226530_79227187_79227273_79227405
transcript_25969.known	chr17	+	753	5	FSM	ENSMUSG00000062691.11	ENSMUST00000063817.7	753	5	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	562.646592009585	291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTGTGGGTCTGCAG	NA	False	NA	NA	False	AATAAA	-22	NA	79223945	79227735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_79224123_79225785_79225902_79226484_79226530_79227187_79227273_79227405
transcript_2597.known	chr1	-	784	4	FSM	ENSMUSG00000026466.17	ENSMUST00000141980.2	784	4	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_3	11.7284080571728	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACACTTGTCAAGTGTTCT	NA	False	NA	NA	False	AATAAA	-41	NA	155911893	155905918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_155906178_155907159_155907220_155909471_155909547_155911503
transcript_25970.nic	chr17	+	953	5	NIC	ENSMUSG00000062691.11	novel	753	5	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	686.839500902503	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACGTGTGTGGGTCTGCAG	NA	False	NA	NA	False	AATAAA	-22	NA	79224112	79227735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_79224490_79225785_79225902_79226484_79226530_79227187_79227273_79227405
transcript_2598.nnic	chr1	+	1948	3	NIC	ENSMUSG00000050565.17	novel	2491	3	NA	NA	-17	-731	combination_of_known_splicesites	FALSE	canonical	3	36	junction_1	105	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTTCTAATTTTCTCCT	NA	False	NA	10	True	AATAAA	-14	NA	155911454	155928544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_155911838_155916820_155916881_155927039
transcript_25981.known	chr17	+	1749	10	FSM	ENSMUSG00000024082.6	ENSMUST00000024887.6	1749	10	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_6	40.441391826191	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAATTGTCTCCTTATCAA	NA	False	NA	NA	False	AGTAAA	-12	NA	79244564	79254928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_79244631_79244919_79245084_79245969_79246051_79247023_79247135_79249497_79249712_79250681_79250741_79251262_79251374_79252369_79252514_79253724_79253899_79254303
transcript_25989.known	chr17	+	514	2	FSM	ENSMUSG00000024082.6	ENSMUST00000233138.2	514	2	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTACCCTCCTGAGTGCTG	NA	False	NA	NA	False	NA	NA	NA	79244587	79245390	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_79244631_79244919
transcript_2599.nnic	chr1	+	2679	3	NIC	ENSMUSG00000050565.17	novel	2491	3	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_1	105	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGCAGGTTTTATTGTT	NA	False	NA	3	True	AATAAA	-15	NA	155911454	155929275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_155911838_155916820_155916881_155927039
transcript_25990.nic	chr17	-	3638	9	NIC	ENSMUSG00000024070.16	novel	5884	19	NA	NA	-23	-541	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	42.4941172399192	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTGTTTAATATATTTA	NA	False	NA	0	True	NA	NA	NA	79328268	79277588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_79279270_79279831_79280016_79282163_79282242_79282803_79282997_79289202_79289361_79290954_79291087_79292643_79292783_79320052_79320971_79328113
transcript_25991.nic	chr17	-	2243	9	NIC	ENSMUSG00000024070.16	novel	1265	7	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	42.4941172399192	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGTGAGGTGTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	79328268	79278983	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_79279270_79279831_79280016_79282163_79282242_79282803_79282997_79289202_79289361_79290954_79291087_79292643_79292783_79320052_79320971_79328113
transcript_25996.known	chr17	+	2059	7	FSM	ENSMUSG00000024084.9	ENSMUST00000040789.6	2059	7	0	0	0	0	multi-exon	TRUE	canonical	3	226	junction_1	6.47216261298253	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAGAATAACTATTGCCTC	NA	False	NA	-2	True	AATATA	-14	NA	79359334	79397807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_79359818_79371356_79371504_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
transcript_26.known	ERCC-00076	+	626	1	FSM	ERCC-00076A	DQ883650	626	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00076_+_0_600
transcript_2600.known	chr1	+	2491	3	FSM	ENSMUSG00000050565.17	ENSMUST00000111754.9	2491	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	87	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGCAGGTTTTATTGTT	NA	False	NA	3	True	AATAAA	-15	NA	155911471	155929275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_155911667_155916820_155916881_155927039
transcript_26003.known	chr17	+	1473	6	FSM	ENSMUSG00000024084.9	ENSMUST00000233916.2	1473	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	82.0351144327842	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGAATTTATTTTCATGT	NA	False	NA	11	True	ATTAAA	-20	NA	79359616	79397650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_79359818_79378101_79378381_79384910_79385088_79386895_79386996_79389175_79389293_79397051
transcript_26005.nnic	chr17	-	1895	2	NNC	ENSMUSG00000036533.10	novel	2265	2	NA	NA	10248	-274	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGCAAAGTCTACATTTT	NA	False	NA	-6	True	AATATA	-23	NA	79650188	79641429	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_79643146_79650009
transcript_26006.known	chr17	-	2265	2	FSM	ENSMUSG00000036533.10	ENSMUST00000068958.9	2265	2	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGAACGTGTTCATTTA	NA	False	NA	NA	False	AATAAA	-12	NA	79662520	79641155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_79643146_79662245
transcript_26008.nnic	chr17	-	3580	14	NNC	ENSMUSG00000059811.14	novel	3618	13	NA	NA	-2	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	103.863075544384	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGTGTTCTGAAATTAAA	3761	False	NA	-2	True	AATAAA	-18	NA	80203542	80155818	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_80156196_80156223_80157708_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80183230_80183476_80203337
transcript_26010.known	chr17	-	3618	13	FSM	ENSMUSG00000059811.14	ENSMUST00000068282.7	3618	13	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_5	41.6619997386374	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAGTGTTCTGAAATTAAA	3751	False	NA	-2	True	AATAAA	-18	NA	80203552	80155818	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_80157708_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80183230_80183476_80203337
transcript_26013.known	chr17	-	3371	12	FSM	ENSMUSG00000059811.14	ENSMUST00000112437.8	3371	12	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	103.456941975757	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCAAGTGTTCTGAAATTA	3751	False	NA	-4	True	AATAAA	-16	NA	80203552	80155820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_80157708_80159953_80160386_80161262_80161335_80161982_80162040_80163564_80163693_80164536_80164676_80167215_80167309_80168531_80168589_80168857_80168909_80172131_80172237_80172470_80172606_80203337
transcript_26018.known	chr17	-	2742	14	FSM	ENSMUSG00000024095.16	ENSMUST00000184297.8	2742	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	238.271661377061	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTGTTCATCTTCATT	3570	False	NA	NA	False	TATAAA	-15	NA	80369656	80337265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80352368_80352452_80356036_80356110_80356193_80356291_80357235_80357322_80358056_80358295_80360951_80361071_80369085
transcript_26019.known	chr17	-	3116	13	FSM	ENSMUSG00000024095.16	ENSMUST00000061331.14	3116	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_9	159.429974178843	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATACTAAGGCTGTTGTTC	3463	False	NA	-4	True	NA	NA	NA	80369763	80336915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80356036_80356110_80356193_80356290_80357234_80357322_80358056_80358295_80360951_80361071_80369085
transcript_2602.known	chr1	+	2589	3	FSM	ENSMUSG00000050565.17	ENSMUST00000097526.3	2589	3	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	41.5	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTGGCTTTTGTCTCTT	NA	False	NA	10	True	AATAAA	-19	NA	155916662	155929482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_155916749_155916820_155916881_155927039
transcript_26020.known	chr17	-	3009	13	FSM	ENSMUSG00000024095.16	ENSMUST00000184635.8	3009	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	159.429974178843	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATACTAAGGCTGTTGTTC	3570	False	NA	-4	True	NA	NA	NA	80369656	80336915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_80337970_80339969_80340069_80340156_80340215_80341474_80341677_80342759_80342882_80346020_80346239_80351922_80351995_80356036_80356110_80356193_80356291_80357235_80357322_80358056_80358295_80360951_80361071_80369085
transcript_26025.known	chr17	+	2314	7	FSM	ENSMUSG00000035473.11	ENSMUST00000039205.11	2314	7	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_3	8.09149072929224	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGACTCTTGTTCTTTTG	NA	False	NA	11	True	AATAAA	-19	NA	80434899	80492530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_80435335_80445441_80445597_80452408_80452616_80457517_80457600_80488989_80489132_80490620_80490796_80491412
transcript_26030.known	chr17	-	1991	9	FSM	ENSMUSG00000024097.12	ENSMUST00000234503.2	1991	9	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_6	890.532565378718	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGCATGTTTGAGGA	NA	False	NA	NA	False	NA	NA	NA	80514736	80508258	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512050_80512511_80512690_80512868_80513276_80513458_80514603
transcript_26043.known	chr17	-	2288	8	FSM	ENSMUSG00000024097.12	ENSMUST00000063417.11	2288	8	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_3	505.274425335341	248	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATATTCAGTCTTTGG	NA	False	NA	-11	True	AATAAA	-23	NA	80514734	80507508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
transcript_26045.known	chr17	-	1040	8	FSM	ENSMUSG00000024097.12	ENSMUST00000235069.2	1040	8	0	0	0	0	multi-exon	FALSE	canonical	3	1059	junction_3	412.241508371597	1079	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTAGATGTTTTGATTTTT	NA	False	NA	-14	True	AATAAA	-9	NA	80514732	80508745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
transcript_26048.nic	chr17	-	2255	8	NIC	ENSMUSG00000024097.12	novel	2288	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	229	junction_3	678.209978922608	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGATATTCAGTCTTTGG	NA	False	NA	-11	True	AATAAA	-23	NA	80514734	80507508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
transcript_2605.known	chr1	+	2529	2	FSM	ENSMUSG00000050565.17	ENSMUST00000065648.15	2529	2	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	0	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTGGCTTTTGTCTCTT	NA	False	NA	10	True	AATAAA	-19	NA	155916662	155929482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_155916749_155927039
transcript_26054.known	chr17	-	2403	8	FSM	ENSMUSG00000024097.12	ENSMUST00000234095.2	2403	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	780.885394920407	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTAAGTTTGTTCAAT	NA	False	NA	-56	True	NA	NA	NA	80514286	80507553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511550_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80513995
transcript_26066.nic	chr17	-	1026	8	NIC	ENSMUSG00000024097.12	novel	1040	8	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	229	junction_3	678.209978922608	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514735	80508738	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
transcript_2607.known	chr1	+	445	1	FSM	ENSMUSG00000078193.3	ENSMUST00000102782.4	445	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6273	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-18	NA	156193609	156194054	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_156193600_156194100
transcript_26073.known	chr17	-	1921	7	FSM	ENSMUSG00000024097.12	ENSMUST00000235036.2	1921	7	0	0	0	0	multi-exon	FALSE	canonical	3	1059	junction_3	429.146601472685	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTTTGATTTTTGTGTT	NA	False	NA	-9	True	AATAAA	-14	NA	80514734	80508740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511559_80511662_80511741_80512868_80513276_80513458_80514603
transcript_26074.known	chr17	-	1898	7	FSM	ENSMUSG00000024097.12	ENSMUST00000234889.2	1898	7	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_3	729.529623951092	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514733	80508738	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_80509032_80509597_80509634_80510119_80510174_80511583_80511662_80511741_80512868_80513276_80513458_80514603
transcript_26078.known	chr17	-	987	7	FSM	ENSMUSG00000024097.12	ENSMUST00000234696.2	987	7	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	923.958693160396	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGATTTTTGTGTTCA	NA	False	NA	-7	True	AATAAA	-16	NA	80514732	80508738	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_80509032_80510119_80510174_80511583_80511662_80511741_80511817_80512690_80512868_80513276_80513458_80514603
transcript_2608.known	chr1	-	8371	16	FSM	ENSMUSG00000026600.13	ENSMUST00000189661.7	8371	16	0	0	0	0	multi-exon	FALSE	canonical	2	51	junction_13	9.26258903091115	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTGTGTGTAGTGTTAT	1699	False	NA	NA	False	AATAAA	-21	NA	156301901	156252094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_156258686_156259773_156259920_156260416_156260553_156261722_156261822_156263362_156263461_156265273_156265404_156266857_156266904_156267270_156267353_156268076_156268156_156268798_156269082_156269950_156270059_156272124_156272185_156274110_156274263_156285515_156285575_156294250_156294369_156301717
transcript_2610.known	chr1	+	2633	1	FSM	ENSMUSG00000101523.3	ENSMUST00000190422.3	2633	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTTGGTTTTATTTATCAA	NA	False	NA	NA	False	AATAAA	-1	NA	156351581	156354214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_156351600_156354200
transcript_26103.known	chr17	+	668	3	FSM	ENSMUSG00000055760.13	ENSMUST00000156869.2	668	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	158	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTAATACGATTTTGATGTC	NA	False	NA	NA	False	NA	NA	NA	80531869	80534247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_80532100_80533049_80533194_80533953
transcript_26104.known	chr17	+	1134	3	FSM	ENSMUSG00000055760.13	ENSMUST00000069486.13	1134	3	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	34	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATCATATTTCTATTCTTAA	NA	False	NA	39	True	ATTAAA	-30	NA	80531869	80535926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_80532100_80533049_80533194_80535166
transcript_2611.known	chr1	-	3355	7	FSM	ENSMUSG00000060519.12	ENSMUST00000150557.8	3355	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	24.5995709086335	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGATGGTTCTTCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	156501926	156481186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_156483514_156484041_156484167_156494168_156494348_156496683_156496754_156496940_156497207_156501099_156501217_156501655
transcript_26110.known	chr17	+	644	5	FSM	ENSMUSG00000045257.11	ENSMUST00000061703.10	644	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	10.1242283656583	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTTTTTGAATTATGTA	NA	False	NA	12	True	AATAAA	-15	NA	80597640	80604902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_80597767_80599753_80599808_80601898_80602006_80602941_80603079_80604682
transcript_26113.nnic	chr17	+	1292	2	Antisense	novelGene_ENSMUSG00000035051.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTTATGTGTGTTT	NA	False	NA	NA	False	TTTAAA	-17	NA	80540171	80550340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr17_+_80540458_80549334
transcript_26115.known	chr17	-	1991	10	FSM	ENSMUSG00000033966.9	ENSMUST00000234349.2	1991	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	2.31474073955552	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGAAAATCAAAAGACAAGC	NA	False	NA	NA	False	NA	NA	NA	80884913	80831961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_80832816_80841226_80841362_80842822_80842880_80846932_80847016_80851048_80851247_80855120_80855212_80858254_80858328_80863735_80863858_80867778_80868004_80884760
transcript_2612.known	chr1	-	3285	6	FSM	ENSMUSG00000060519.12	ENSMUST00000079625.11	3285	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_5	7.96492310069595	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGATGGTTCTTCCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	156501926	156481186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_156483514_156484041_156484167_156494168_156494348_156496940_156497207_156501099_156501217_156501655
transcript_26121.known	chr17	-	1833	10	FSM	ENSMUSG00000024246.10	ENSMUST00000025093.6	1833	10	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_3	16.3940669785982	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATAATTTGCTTATAGACTC	8164	False	NA	NA	False	ATTAAA	-22	NA	81372496	81333760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_81334400_81340060_81340170_81344926_81345042_81345533_81345606_81351528_81351617_81357365_81357419_81360323_81360402_81361552_81361963_81363203_81363340_81372363
transcript_26125.known	chr17	-	1076	3	FSM	ENSMUSG00000024248.15	ENSMUST00000025095.9	1076	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	644	3369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTTGTTTTTTGTTTT	9947	False	NA	-23	True	AATAAA	-23	NA	83821759	83809346	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_83810167_83811528_83811658_83821632
transcript_26126.known	chr17	-	1129	4	FSM	ENSMUSG00000024248.15	ENSMUST00000167741.9	1129	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	605.058858477605	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAAGATGTTTTTAGTTT	9947	False	NA	-39	True	AATAAA	-7	NA	83821759	83809362	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_83810167_83811359_83811429_83811528_83811658_83821632
transcript_26127.known	chr17	+	2087	17	FSM	ENSMUSG00000055817.19	ENSMUST00000067826.15	2087	17	0	0	0	0	multi-exon	FALSE	canonical	1	12	junction_6	449.066236066574	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGTGTTTATTTTGTTT	NA	False	NA	NA	False	AATAAA	-18	NA	84013619	84122334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070342_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970_84100194_84107478_84107566_84111879_84112027_84122064
transcript_26130.known	chr17	+	1723	14	FSM	ENSMUSG00000055817.19	ENSMUST00000112350.8	1723	14	0	0	0	0	multi-exon	FALSE	canonical	3	649	junction_11	147.297388673592	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGCCTTTGTTTTTTTTT	NA	False	NA	10	True	AATAAA	-15	NA	84013591	84100302	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_84013715_84015827_84015896_84022042_84022137_84045757_84045885_84061282_84061347_84062987_84063106_84070339_84070443_84073935_84074036_84083010_84083200_84089330_84089406_84091705_84091765_84096349_84096472_84099081_84099231_84099970
transcript_2614.known	chr1	-	2947	20	FSM	ENSMUSG00000026594.15	ENSMUST00000063199.13	2947	20	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_5	55.0008310186526	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTCTTGTATGACTTCA	NA	False	NA	-31	True	AATAAA	-38	NA	156767101	156635685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156648956_156649035_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
transcript_26140.known	chr17	+	1354	13	FSM	ENSMUSG00000024253.10	ENSMUST00000025101.10	1354	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_6	7.6412622575651	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATCTAAGTATAAATTTT	NA	False	NA	16	True	AATAAA	-24	NA	84933923	84963016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_84934005_84935712_84935831_84939063_84939099_84940946_84941017_84943659_84943749_84950299_84950487_84951532_84951602_84952146_84952225_84954672_84954750_84955073_84955145_84956643_84956742_84957136_84957230_84962728
transcript_26141.nnic	chr17	+	655	6	NNC	ENSMUSG00000024253.10	novel	1354	13	NA	NA	-61	-9262	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_5	29.355749011054	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAATGTCTACATACTTAT	NA	False	NA	NA	False	NA	NA	NA	84933862	84948482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_84934005_84935712_84935831_84939063_84939099_84940946_84941017_84943659_84943749_84948281
transcript_26143.known	chr17	+	2670	6	FSM	ENSMUSG00000061130.14	ENSMUST00000080217.14	2670	6	0	0	0	0	multi-exon	FALSE	canonical	3	718	junction_5	336.634519917373	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGCACACTTTGGCTCAG	NA	False	NA	6	True	AATAAA	-22	NA	85265426	85322119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_85265823_85301107_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85320993
transcript_26145.known	chr17	+	3323	6	FSM	ENSMUSG00000061130.14	ENSMUST00000112304.10	3323	6	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_5	340.544857544494	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATTGGCATACTTGTGGA	NA	False	NA	19	True	AATAAA	-31	NA	85265436	85324625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_85265823_85301107_85301968_85310693_85310812_85312339_85312452_85312936_85312995_85322836
transcript_26146.known	chr17	-	434	2	FSM	ENSMUSG00000097047.3	ENSMUST00000234932.2	434	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTTTGTTGTTTGTTTGTT	NA	False	NA	NA	False	ACTAAA	-20	NA	85264667	85262389	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_85262737_85264580
transcript_26148.known	chr17	-	2734	15	FSM	ENSMUSG00000024127.16	ENSMUST00000171795.9	2734	15	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_9	21.6455679584736	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTCTTTGTGTAATTTTG	NA	False	NA	-3	True	TTTAAA	-4	NA	85397652	85371957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85396304_85397533
transcript_26150.known	chr17	-	3255	14	FSM	ENSMUSG00000024127.16	ENSMUST00000072406.5	3255	14	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_13	48.4489605166915	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAATTTTCTTCGTGTCT	NA	False	NA	-18	True	TATAAA	-38	NA	85397649	85370897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_85372162_85372469_85372544_85373059_85373184_85373575_85373726_85376312_85376530_85377855_85378032_85379339_85379538_85383293_85383480_85384036_85384254_85385916_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85397533
transcript_26151.known	chr17	-	773	6	FSM	ENSMUSG00000024127.16	ENSMUST00000234676.2	773	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	72.4237530096308	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCAGCGCGCTGCCCTCAC	NA	False	NA	NA	False	AATGAA	-28	NA	85397669	85385915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85395871_85397533
transcript_26152.known	chr17	-	1625	6	FSM	ENSMUSG00000024127.16	ENSMUST00000234036.2	1625	6	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_4	17.1043854025802	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTTAAAAAAAAAATGTG	NA	False	NA	NA	False	AATAAA	-38	NA	85397659	85385486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85395767_85396304_85397533
transcript_26153.nic	chr17	-	1120	5	ISM	ENSMUSG00000024127.16	ENSMUST00000072406.5	3255	14	-41	14589	-21	0	5prime_fragment	FALSE	canonical	3	23	junction_4	71.3249605678124	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTTAAAAAAAAAATGTG	NA	False	NA	NA	False	AATAAA	-38	NA	85397690	85385486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_85386053_85388491_85388699_85389399_85389467_85390620_85390744_85397533
transcript_26156.known	chr17	+	1595	11	FSM	ENSMUSG00000071037.7	ENSMUST00000095188.7	1595	11	0	0	0	0	multi-exon	TRUE	canonical	3	62	junction_6	13.9484766193302	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAATTGTTTCAATCTATC	2173	False	NA	10	True	AATAAA	-26	NA	85397979	85766016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_85398292_85403917_85404091_85421210_85421276_85699000_85699062_85700885_85700941_85702029_85702094_85709853_85709921_85738898_85738974_85746954_85747019_85759623_85759756_85765489
transcript_26160.known	chr17	-	3530	21	FSM	ENSMUSG00000024135.11	ENSMUST00000095187.4	3530	21	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_9	11.0027269347194	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTGTGCTGTTCATTG	NA	False	NA	-1	True	AATAAA	-15	NA	86452603	86292092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_86292912_86295752_86295938_86307748_86307902_86308858_86309036_86311274_86311382_86358513_86358597_86365103_86365196_86405939_86406048_86406632_86406724_86410270_86410429_86416654_86416763_86422620_86422725_86427341_86427478_86428077_86428175_86433538_86433678_86435143_86435262_86437541_86437709_86443591_86443964_86446496_86446678_86449787_86449868_86452548
transcript_26164.nnic	chr17	-	884	6	NNC	ENSMUSG00000024145.7	novel	988	6	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	135.20562118492	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGGCTTCAGATGCTGTT	NA	False	NA	-12	True	AATAAA	-15	NA	87332819	87304683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_87304996_87316230_87316340_87327828_87327946_87329286_87329379_87331092_87331253_87332725
transcript_26165.known	chr17	-	988	6	FSM	ENSMUSG00000024145.7	ENSMUST00000024957.7	988	6	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_5	28.3760462362183	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGGCTTCAGATGCTGTT	NA	False	NA	-12	True	AATAAA	-15	NA	87332834	87304683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_87304996_87316230_87316340_87327828_87327946_87329286_87329379_87331092_87331342_87332725
transcript_26170.nic	chr17	-	1427	5	ISM	ENSMUSG00000024145.7	ENSMUST00000024957.7	988	6	-13	10809	-13	-10809	5prime_fragment	FALSE	canonical	3	301	junction_4	30.5971812427223	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCCACGTCTTTATTT	NA	False	NA	NA	False	ATTAAA	-31	NA	87332847	87315492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_-_87316340_87327828_87327946_87329286_87329379_87331092_87331342_87332725
transcript_26175.known	chr17	+	1184	5	FSM	ENSMUSG00000024146.10	ENSMUST00000024959.10	1184	5	0	0	0	0	multi-exon	FALSE	canonical	3	592	junction_4	35.4427355039083	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTTGTGTCTTCAATGAT	NA	False	NA	4	True	AATAAA	-14	NA	87332977	87343238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_87333104_87335126_87335193_87338435_87338491_87341683_87341788_87342405
transcript_26178.known	chr17	+	763	5	FSM	ENSMUSG00000024146.10	ENSMUST00000160269.2	763	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	278.799210902757	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGAATGAGCAGCACCTTA	NA	False	NA	NA	False	NA	NA	NA	87333038	87342900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_87333082_87335126_87335193_87338435_87338491_87341683_87341788_87342405
transcript_26186.known	chr17	-	813	5	FSM	ENSMUSG00000024150.13	ENSMUST00000129616.8	813	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	139.054620563288	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCCACATGACTGTGG	NA	False	NA	NA	False	NA	NA	NA	87573308	87563215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87566177_87566310_87573219
transcript_26187.known	chr17	-	603	5	FSM	ENSMUSG00000024150.13	ENSMUST00000151155.8	603	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	129.331695651143	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGCTACATCGACTACGCT	NA	False	NA	NA	False	NA	NA	NA	87573323	87563397	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87566177_87566310_87573262
transcript_2619.known	chr1	-	4237	19	FSM	ENSMUSG00000026594.15	ENSMUST00000027886.14	4237	19	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_5	32.038605185342	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCGACTGGGATATTGTA	NA	False	NA	-2	True	ATTAAA	-18	NA	156767113	156634329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_156636764_156639014_156639107_156641007_156641114_156645310_156645404_156647382_156647489_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
transcript_26190.known	chr17	-	2017	5	FSM	ENSMUSG00000024150.13	ENSMUST00000144236.9	2017	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	147.031246679065	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573332	87562085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_87563486_87564574_87564735_87565355_87565518_87571568_87571794_87573262
transcript_26192.nnic	chr17	-	1792	4	NNC	ENSMUSG00000024150.13	novel	2017	5	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	147.196769288218	87	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTGACGTTGACTC	NA	False	NA	-2	True	AATAAA	-17	NA	87573380	87562085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_-_87563486_87564574_87564735_87565355_87565518_87573310
transcript_26194.known	chr17	+	868	1	FSM	ENSMUSG00000036918.17	ENSMUST00000234468.2	868	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTAGACCGATGCGTTT	NA	False	NA	NA	False	AATAAA	-26	NA	87590375	87591243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_87590400_87591200
transcript_26196.known	chr17	-	1205	6	FSM	ENSMUSG00000036438.15	ENSMUST00000040440.7	1205	6	0	0	0	0	multi-exon	FALSE	canonical	3	6557	junction_1	335.908082665482	871	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGCTCTGAATCTGAGT	NA	False	NA	-5	True	AATAAA	-21	NA	87754363	87740839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
transcript_26198.known	chr17	-	842	5	FSM	ENSMUSG00000036438.15	ENSMUST00000234406.2	842	5	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_4	3004.56365384393	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCGTGGACTGTGGACAGT	NA	False	NA	-135	True	NA	NA	NA	87754284	87741092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_87741484_87742503_87742640_87743031_87743139_87743218_87743363_87754220
transcript_26199.known	chr17	-	657	5	FSM	ENSMUSG00000036438.15	ENSMUST00000150137.2	657	5	0	0	0	0	multi-exon	FALSE	canonical	3	7049	junction_1	180.22954114129	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGACTCTCAGGTCTACG	NA	False	NA	NA	False	TTTAAA	-37	NA	87754277	87742321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_87742640_87743031_87743139_87743218_87743363_87750123_87750155_87754220
transcript_26202.known	chr17	+	3283	16	FSM	ENSMUSG00000024151.14	ENSMUST00000024967.14	3283	16	0	0	0	0	multi-exon	FALSE	canonical	3	1624	junction_8	132.693531618287	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGGGGGTACCTTGTATT	4661	False	NA	19	True	AATAAA	-16	NA	87979757	88031141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922_88004033_88014609_88014734_88015879_88016031_88020056_88020155_88024882_88025129_88026028_88026234_88026715_88026964_88028310_88028487_88030758
transcript_26211.nic	chr17	+	1584	8	ISM	ENSMUSG00000024151.14	ENSMUST00000173097.8	2502	10	-64	12705	-43	0	5prime_fragment	FALSE	canonical	3	1629	junction_6	24.7732574707947	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGTTTGTATTTTTTTG	4828	False	NA	NA	False	ATTAAA	-16	NA	87979924	88004131	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr17_+_87980235_87985635_87985791_87987227_87987507_87989958_87990106_87992864_87993015_87993723_87993858_87996369_87996570_88003922
transcript_26215.known	chr17	+	4251	10	FSM	ENSMUSG00000005370.5	ENSMUST00000005503.5	4251	10	0	0	0	0	multi-exon	FALSE	canonical	3	2207	junction_2	252.867310151411	284	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTTTTCCATTTTCTTTC	NA	False	NA	31	True	AATAAA	-20	NA	88282489	88298320	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_88282834_88287618_88287819_88290872_88291043_88291873_88294410_88295613_88295883_88296571_88296690_88296854_88296945_88297621_88297777_88297858_88298059_88298151
transcript_26218.known	chr17	+	5085	6	FSM	ENSMUSG00000034998.19	ENSMUST00000112238.9	5085	6	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_4	10.9288608738514	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTTTGTTATTTGTGAG	NA	False	NA	15	True	AATAAA	-19	NA	88748138	88797961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_88748313_88770140_88770692_88783283_88783379_88786703_88786769_88791828_88791898_88793830
transcript_26220.known	chr17	+	3141	22	FSM	ENSMUSG00000034709.9	ENSMUST00000038551.8	3141	22	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_5	9.91871727497827	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCGGTCTGTGACAGTG	NA	False	NA	16	True	AATAAA	-17	NA	88837545	88895795	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_88837747_88850272_88850342_88852748_88852896_88854995_88855098_88856921_88857087_88857218_88857278_88858089_88858185_88862277_88862331_88863009_88863160_88866016_88866119_88866204_88866294_88869536_88869674_88873068_88873162_88876507_88876636_88880030_88880184_88882619_88882713_88884565_88884809_88886209_88886243_88887862_88887980_88889842_88889942_88891280_88891410_88895111
transcript_26221.nnic	chr17	-	782	4	Antisense	novelGene_ENSMUSG00000033855.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	25	junction_2	14.6590889515307	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGGCCTCCTTTGATGCC	NA	False	NA	NA	False	TATAAA	-13	NA	88932952	88923786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr17_-_88924018_88928723_88928829_88930105_88930383_88932783
transcript_26224.nnic	chr17	-	513	3	Antisense	novelGene_ENSMUSG00000033855.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	13	junction_2	9.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGGCCTCCTTTGATGCC	NA	False	NA	NA	False	TATAAA	-13	NA	88932960	88923786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr17_-_88924018_88928723_88928829_88932783
transcript_26228.known	chr17	+	767	2	FSM	ENSMUSG00000033855.16	ENSMUST00000137138.2	767	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTACATCTGCGAGAAGC	NA	False	NA	NA	False	NA	NA	NA	88905111	88943257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_88905170_88942548
transcript_26230.known	chr17	+	1621	9	FSM	ENSMUSG00000024154.12	ENSMUST00000024970.11	1621	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.82915619758885	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACACATTTACAACATAGT	NA	False	NA	NA	False	AATAAA	-19	NA	88976087	89022580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_88976160_88978621_88978724_88978926_88979048_88997414_88997471_88999145_88999231_89001530_89002097_89018868_89019127_89019783_89019874_89022309
transcript_26231.nic	chr17	+	1516	7	NIC	ENSMUSG00000024154.12	novel	1621	9	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	0.74535599249993	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACACATTTACAACATAGT	NA	False	NA	NA	False	AATAAA	-19	NA	88976051	89022580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_88976160_88978621_88978724_88978926_88979048_89001530_89002097_89018868_89019127_89019783_89019874_89022309
transcript_26232.known	chr17	-	1988	1	FSM	ENSMUSG00000066878.6	ENSMUST00000086423.6	1988	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	846	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAACTTTGAGATG	NA	False	NA	NA	False	AATAAA	-34	NA	90217877	90215889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_90215900_90217900
transcript_26233.known	chr17	+	313	1	FSM	ENSMUSG00000117476.2	ENSMUST00000234959.2	313	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGAACCCTCCCCCAATA	NA	False	NA	NA	False	NA	NA	NA	94915612	94915925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_94915600_94915900
transcript_26235.nic	chr17	-	2642	9	NIC	ENSMUSG00000055660.10	novel	2560	8	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	71	junction_6	15.2151240547029	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTTATAGTGAGTCTCT	NA	False	NA	NA	False	AATATA	-16	NA	95057466	95034512	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95051359_95051423_95055044_95055846_95056813
transcript_26236.known	chr17	-	2560	8	FSM	ENSMUSG00000055660.10	ENSMUST00000171284.3	2560	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	27.8948462799061	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTTATAGTGAGTCTCT	NA	False	NA	NA	False	AATATA	-16	NA	95057447	95034512	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_-_95034824_95040516_95040609_95040974_95041082_95042763_95042939_95046881_95046952_95047813_95048184_95055044_95055846_95056813
transcript_26237.nic	chr17	+	1407	11	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-29	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_4	53.5022429436374	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTGTCCCCTCCCAT	NA	False	NA	NA	False	AATAAA	-14	NA	95057498	95082560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95067022_95067123_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
transcript_2624.nic	chr1	-	1641	12	ISM	ENSMUSG00000026594.15	ENSMUST00000190648.7	2498	15	-35	9738	-2	-63	5prime_fragment	FALSE	canonical	3	193	junction_3	27.825311029426	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTTTATATTTCTAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	156767198	156656184	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
transcript_26240.nnic	chr17	+	1265	10	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_6	46.65343727826	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTGTCCCCTCCCAT	NA	False	NA	NA	False	AATAAA	-14	NA	95057498	95082560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071311_95074284_95074376_95078561_95078667_95079284_95079389_95082319
transcript_26241.nic	chr17	+	1328	10	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_7	48.1350979465191	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTGTCCCCTCCCAT	NA	False	NA	NA	False	AATAAA	-14	NA	95057498	95082560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078540_95078667_95079284_95079389_95082319
transcript_26242.known	chr17	+	1275	10	FSM	ENSMUSG00000098090.9	ENSMUST00000182402.8	1275	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	42.4223328093547	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGTGTGGGTGTCCCCTCC	NA	False	NA	NA	False	AATAAA	-11	NA	95057527	95082557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_95057661_95062638_95062734_95063861_95063952_95068925_95069033_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
transcript_26248.nnic	chr17	+	1200	9	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-29	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_3	47.0790558528949	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTGTCCCCTCCCAT	NA	False	NA	NA	False	AATAAA	-14	NA	95057498	95082560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_95057661_95062638_95062734_95063861_95063952_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
transcript_2625.known	chr1	-	2498	15	FSM	ENSMUSG00000026594.15	ENSMUST00000190648.7	2498	15	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	35.9233878680501	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACATTGAG	NA	False	NA	NA	False	AAAAAG	-5	NA	156767163	156646446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_156647489_156651560_156651616_156655709_156655862_156656541_156656699_156657954_156658023_156660234_156660326_156660464_156660603_156697010_156697138_156712102_156712196_156714660_156714751_156715516_156715601_156728155_156728207_156729355_156729461_156735208_156735349_156767058
transcript_26252.nnic	chr17	+	1093	8	NIC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_2	36.7106724180824	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGGTGTCCCCTCCCAT	NA	False	NA	NA	False	AATAAA	-14	NA	95057510	95082560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr17_+_95057661_95063861_95063952_95069889_95070049_95071199_95071353_95074284_95074376_95078561_95078667_95079284_95079389_95082319
transcript_26256.nnic	chr17	+	657	6	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-19	19018	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	82.110657042798	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057508	95101578	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_95057661_95060130_95060304_95062638_95062734_95063861_95063952_95092912_95092936_95101454
transcript_26257.nnic	chr17	+	494	5	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-29	19018	at_least_one_novel_splicesite	FALSE	canonical	3	132	junction_1	29.2232783924049	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057498	95101578	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_95057661_95062638_95062734_95063861_95063952_95092912_95092936_95101454
transcript_26260.nnic	chr17	+	387	4	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-17	19018	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_3	26.8493740874697	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057510	95101578	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_95057661_95063861_95063952_95092912_95092936_95101454
transcript_26261.nnic	chr17	+	402	4	NNC	ENSMUSG00000098090.9	novel	1275	10	NA	NA	-17	19018	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	77.6831169989121	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCATGGTTCATTTTGA	NA	False	NA	11	True	AATAAA	-16	NA	95057510	95101578	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr17_+_95057661_95063861_95063952_95092912_95092951_95101454
transcript_26263.known	chr17	+	3079	4	FSM	ENSMUSG00000095193.3	ENSMUST00000234295.2	3079	4	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	17.6635217326557	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTCGTCATGGTATC	NA	False	NA	NA	False	NA	NA	NA	95172345	95185749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr17_+_95172441_95181413_95181541_95181729_95181791_95182953
transcript_26268.known	chr18	-	2778	9	FSM	ENSMUSG00000063889.17	ENSMUST00000165086.8	2778	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_7	23.777286956253	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGTGTGTATGTCT	-20	True	NA	-2	True	TATAAA	-17	NA	3337589	3266355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_3268130_3273421_3273579_3276693_3276730_3295039_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3327493_3327592_3337379
transcript_2627.known	chr1	+	1194	3	FSM	ENSMUSG00000049881.14	ENSMUST00000061537.12	1194	3	0	0	0	0	multi-exon	FALSE	canonical	3	989	junction_1	26.5	1004	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCTGGCCCAGTGTCTTC	NA	False	NA	35	True	AATAAA	-17	NA	157239921	157247806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_157240696_157241313_157241366_157247438
transcript_26285.known	chr18	-	1256	5	FSM	ENSMUSG00000063889.17	ENSMUST00000142690.2	1256	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	27.3072792493137	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTAGTCTTGTGCATTT	-5	True	NA	-6	True	AATAAA	-12	NA	3337574	3294481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_3295183_3295321_3295417_3299161_3299309_3325360_3325479_3337379
transcript_2629.known	chr1	+	1618	10	FSM	ENSMUSG00000033488.12	ENSMUST00000046743.11	1618	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_7	9.08125188520113	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	14	True	NA	NA	NA	157286149	157316630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_157286216_157286313_157286423_157289522_157289620_157291978_157292038_157292534_157292601_157293281_157293392_157294735_157294818_157298185_157298368_157299757_157299987_157316012
transcript_26290.known	chr18	-	1422	4	FSM	ENSMUSG00000063889.17	ENSMUST00000149803.8	1422	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	16.5797734872612	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGTATGGAAGATCTT	-20	True	NA	NA	False	ATTAAA	-14	NA	3337589	3294183	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_3295183_3295321_3295417_3325360_3325479_3337379
transcript_26293.nic	chr18	+	2926	22	NIC	ENSMUSG00000024231.16	novel	3828	21	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_4	266.031795279762	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAAAAAAAAAAAAAAT	-16	True	NA	72	True	ATTAAA	-28	NA	3383227	3435385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_3383398_3399845_3399987_3405684_3405788_3414129_3414225_3416467_3416554_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
transcript_26296.nic	chr18	+	2797	21	NIC	ENSMUSG00000024231.16	novel	3727	20	NA	NA	-5	-63	combination_of_known_junctions	FALSE	canonical	3	200	junction_1	171.970666103263	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATGACAGATAACCTAATAA	-40	True	NA	9	True	AATAAA	-17	NA	3382982	3435322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_3383173_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
transcript_26297.nic	chr18	+	2860	21	NIC	ENSMUSG00000024231.16	novel	3727	20	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	200	junction_1	171.970666103263	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAAAAAAAAAAAAAAT	-40	True	NA	72	True	ATTAAA	-28	NA	3382982	3435385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_3383173_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
transcript_26298.known	chr18	+	3828	21	FSM	ENSMUSG00000024231.16	ENSMUST00000162301.8	3828	21	0	0	0	0	multi-exon	FALSE	canonical	3	782	junction_1	80.8420682565705	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACCAATTGTCAAGAAATGT	-12	True	NA	5	True	ATTAAA	-17	NA	3383231	3436377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_3383398_3399845_3399987_3405684_3405788_3414129_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
transcript_263.known	chr1	+	5232	6	FSM	ENSMUSG00000051285.18	ENSMUST00000061280.17	5232	6	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	17.1650808329003	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTTTTTGAGGTGTTCT	NA	False	NA	5	True	NA	NA	NA	7159143	7243852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_7159441_7190417_7190840_7217860_7217964_7231115_7231288_7233471_7233596_7239738
transcript_2630.known	chr1	+	1125	7	FSM	ENSMUSG00000033488.12	ENSMUST00000119891.7	1125	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	19.7624784770422	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTGCTTCTTGGTCATGA	NA	False	NA	14	True	NA	NA	NA	157286149	157316630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_157286216_157286313_157286423_157289522_157289620_157291978_157292038_157292534_157292601_157293281_157293392_157316012
transcript_26300.known	chr18	+	2799	21	FSM	ENSMUSG00000024231.16	ENSMUST00000080089.11	2799	21	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	205.086591468092	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAAAAAAAAAAAAAAT	-19	True	NA	72	True	ATTAAA	-28	NA	3383224	3435385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_3383398_3399845_3399987_3405684_3405788_3414173_3414225_3417534_3417641_3418563_3418647_3419346_3419444_3419531_3419643_3421202_3421366_3423468_3423594_3424449_3424558_3425511_3425572_3426094_3426224_3426316_3426404_3426757_3426911_3427162_3427241_3429569_3429637_3430911_3431115_3431483_3431586_3433993_3434111_3434843
transcript_26309.known	chr18	+	5074	3	FSM	ENSMUSG00000024232.3	ENSMUST00000025075.3	5074	3	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_2	19.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTGATTTCCCAATTGAT	-8	True	NA	NA	False	ATTAAA	-18	NA	3507922	3516404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_3508286_3511256_3511545_3511981
transcript_26311.known	chr18	-	2048	2	FSM	ENSMUSG00000024235.12	ENSMUST00000172805.2	2048	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAACTAAAAATAAAATTATG	406	False	NA	NA	False	NA	NA	NA	4353015	4347454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_4349339_4352851
transcript_26312.known	chr18	+	2110	9	FSM	ENSMUSG00000024234.8	ENSMUST00000234186.2	2110	9	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	58.8005102018681	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTCTAGTATCTATTTTCT	-12	True	NA	18	True	AATAAA	-20	NA	4375591	4396785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_4375779_4379568_4379742_4380653_4380888_4383184_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
transcript_26319.known	chr18	+	2626	9	FSM	ENSMUSG00000024234.8	ENSMUST00000234422.2	2626	9	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	58.5340445809103	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGTGATAACAGTATTTC	-8	True	NA	15	True	AATAAA	-16	NA	4375595	4397328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_4375779_4379568_4379742_4380672_4380888_4383188_4383414_4386170_4386383_4386952_4387180_4394973_4395067_4395155_4395230_4396104
transcript_2632.nnic	chr1	+	2640	21	NNC	ENSMUSG00000040782.13	novel	680	9	NA	NA	-5480	346	at_least_one_novel_splicesite	TRUE	canonical	2	11	junction_1	122.194465913968	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTACTGGTGAGTAATTTTA	NA	False	NA	NA	False	AAGAAA	-3	NA	159054409	159173016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_159054557_159067131_159067192_159072158_159072257_159076771_159076849_159077592_159077713_159080117_159080187_159086216_159086313_159094326_159094387_159095678_159095756_159105658_159105717_159112117_159112233_159116474_159116611_159134142_159134287_159135979_159136089_159136452_159136535_159147293_159147411_159152486_159152605_159154646_159154772_159156171_159156333_159170376_159170422_159172390
transcript_26325.known	chr18	+	7907	38	FSM	ENSMUSG00000024236.19	ENSMUST00000126977.8	7907	38	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	35.9549673702747	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTGATCAGTTCACATTG	-8	True	NA	14	True	AATAAA	-20	NA	4920539	5119291	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_4920875_5037107_5037166_5040147_5040240_5046588_5046647_5046763_5046916_5048884_5049495_5054017_5054099_5055979_5056850_5057274_5057440_5058124_5058160_5058712_5058775_5059229_5059370_5060514_5060611_5062161_5062406_5063193_5063771_5064470_5064691_5073880_5074005_5082782_5082931_5086534_5086625_5086709_5086797_5088636_5088815_5090786_5090960_5092844_5093001_5094537_5094675_5095171_5095320_5095435_5095582_5097426_5097603_5098907_5099053_5099433_5099711_5103574_5103727_5105765_5105872_5106663_5106872_5108574_5108709_5114530_5114687_5115977_5116122_5116972_5117098_5118099_5118256_5118345
transcript_26326.known	chr18	-	3211	5	FSM	ENSMUSG00000050945.9	ENSMUST00000063989.7	3211	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	5.40832691319598	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTGTTGTTTTCTTAA	362	False	NA	NA	False	CATAAA	-17	NA	5334439	5210028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_5211199_5213118_5214920_5245385_5245454_5288860_5288939_5334345
transcript_26329.known	chr18	-	4431	18	FSM	ENSMUSG00000041225.17	ENSMUST00000077128.13	4431	18	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_11	36.3783463484115	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGGGAAAAATTCTAAACCAG	40	True	NA	NA	False	NA	NA	NA	6135907	6024784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061846_6061973_6064340_6064422_6065704_6065846_6069830_6070092_6111684_6112440_6115813_6115851_6135803
transcript_26331.known	chr18	-	2500	17	FSM	ENSMUSG00000041225.17	ENSMUST00000182383.8	2500	17	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_13	36.3438440454501	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTCACAAAAGACAGCCTG	174	False	NA	NA	False	NA	NA	NA	6135888	6026555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_6026731_6027574_6027678_6027959_6028095_6028193_6028272_6031729_6031829_6033140_6033258_6034449_6034553_6037017_6037117_6039353_6039456_6049276_6049359_6052861_6052924_6061846_6061973_6064340_6064422_6069830_6070092_6111684_6112440_6115813_6115851_6135803
transcript_26335.known	chr18	-	6032	26	FSM	ENSMUSG00000006740.15	ENSMUST00000025083.14	6032	26	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	215.348105169282	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATGACGTATTAGCTTG	-5	True	NA	0	True	AATAAA	-42	NA	6241523	6201001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_6203708_6208186_6208336_6208999_6209217_6210699_6210805_6211023_6211096_6211191_6211253_6212516_6212619_6213186_6213297_6213392_6213455_6213969_6214088_6214511_6214701_6216222_6216367_6216740_6216948_6220223_6220293_6220801_6220996_6222718_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
transcript_26337.nic	chr18	-	2310	16	ISM	ENSMUSG00000006740.15	ENSMUST00000163210.2	2006	17	-90	0	-37	0	intron_retention	FALSE	canonical	3	809	junction_12	103.126373391528	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAATGGAAGAAAATGA	NA	False	NA	NA	False	NA	NA	NA	6241560	6214568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr18_-_6214701_6216222_6216367_6216740_6216948_6220223_6220293_6220801_6220996_6222718_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
transcript_26338.nic	chr18	-	1491	11	ISM	ENSMUSG00000006740.15	ENSMUST00000163210.2	2006	17	-90	8223	-37	-1932	intron_retention	FALSE	canonical	3	809	junction_7	115.848867063947	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAGGAAAAAAATAAAAC	NA	False	NA	NA	False	AAAAAG	-13	NA	6241560	6222791	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr18_-_6222868_6223545_6223692_6223970_6224076_6225317_6225443_6225596_6225685_6225767_6225824_6226381_6226431_6226863_6226969_6227587_6227662_6234814_6234903_6240981
transcript_26339.known	chr18	+	411	1	FSM	ENSMUSG00000073640.4	ENSMUST00000097682.4	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10169	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATATTTTTGTTTTGGTCA	33	False	NA	NA	False	NA	NA	NA	6332631	6333042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_6332600_6333000
transcript_26340.known	chr18	-	3965	14	FSM	ENSMUSG00000024240.14	ENSMUST00000028100.13	3965	14	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_13	6.05888266692776	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTGCAGTGGTCTTTGCC	-18	True	NA	-1	True	AATAAA	-27	NA	6490856	6435952	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_6437308_6439591_6439956_6440048_6440191_6441121_6441244_6448904_6449258_6450068_6450218_6450296_6450387_6450465_6450640_6452232_6452393_6453508_6453658_6454186_6454394_6455188_6455335_6462831_6462992_6490462
transcript_26341.known	chr18	-	565	2	FSM	ENSMUSG00000024240.14	ENSMUST00000050542.6	565	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGGTTATTTAACCTTTTA	-18	True	NA	NA	False	AATAAA	-15	NA	6490856	6489159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_6489331_6490462
transcript_26347.known	chr18	+	6515	7	FSM	ENSMUSG00000073639.7	ENSMUST00000234810.2	6515	7	0	0	0	0	multi-exon	FALSE	canonical	3	943	junction_6	99.6015673683011	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGCATTGATTTATTCAGC	24	False	NA	NA	False	CATAAA	-23	NA	6765144	6794429	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_6765333_6770053_6770110_6778494_6778557_6783119_6783193_6784569_6784689_6784938_6785006_6788479
transcript_26355.known	chr18	-	4981	17	FSM	ENSMUSG00000057440.9	ENSMUST00000115869.4	4981	17	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_16	22.8061635035356	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGCTTTCAAGATTATTG	-22	True	NA	NA	False	ATTAAA	-20	NA	7626866	7347958	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_7351145_7353153_7353298_7355017_7355127_7356141_7356236_7379988_7380070_7403185_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444106_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7626732
transcript_26357.known	chr18	-	1784	13	FSM	ENSMUSG00000057440.9	ENSMUST00000234571.2	1784	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_12	25.7265265177145	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGTGCTCGTATTTTCC	-17	True	NA	NA	False	AATAAA	-27	NA	7626861	7379647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_7380070_7403185_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444106_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7626732
transcript_26359.nic	chr18	-	1262	12	ISM	ENSMUSG00000057440.9	ENSMUST00000235093.2	3786	13	-61	4332	-25	1	5prime_fragment	FALSE	canonical	3	86	junction_11	9.14529188360676	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAGAAAATAAATAAGTCCA	NA	False	NA	NA	False	NA	NA	NA	7626891	7403319	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr18_-_7403357_7439568_7439634_7440082_7440280_7440431_7440507_7441552_7441639_7442792_7442875_7443973_7444106_7458931_7459013_7461637_7461716_7512943_7513063_7561725_7561873_7626728
transcript_2636.known	chr1	+	2999	3	FSM	ENSMUSG00000058267.14	ENSMUST00000135680.8	2999	3	0	0	0	0	multi-exon	FALSE	canonical	3	2655	junction_1	51	960	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTAGGGTTGATCTGGCT	NA	False	NA	NA	False	AATAAA	-24	NA	160022784	160029740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160022882_160024515_160024675_160026997
transcript_26360.known	chr18	-	675	2	FSM	ENSMUSG00000057440.9	ENSMUST00000234366.2	675	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATCGG	-22	True	NA	NA	False	NA	NA	NA	7626866	7561335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_7561873_7626728
transcript_26362.known	chr18	+	3070	14	FSM	ENSMUSG00000024283.16	ENSMUST00000074919.11	3070	14	0	0	0	0	multi-exon	TRUE	canonical	3	146	junction_1	117.532571338518	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAACACATTTTGTTAC	7	True	NA	NA	False	AATAAA	-8	NA	7868849	7927067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_7869092_7869990_7870028_7871548_7871745_7901495_7901603_7905399_7905516_7905931_7906045_7910515_7910825_7916051_7916298_7917552_7917676_7918432_7918582_7920131_7920251_7921421_7921609_7921855_7921984_7926069
transcript_26366.known	chr18	+	8024	10	FSM	ENSMUSG00000036103.10	ENSMUST00000234965.2	8024	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_7	3.52066211505664	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTATCTGTGTTCTAAAT	0	True	NA	NA	False	NA	NA	NA	9707594	9882644	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_9707760_9720920_9720972_9840238_9840362_9846786_9846886_9848103_9849151_9858545_9859035_9859837_9859975_9866743_9866854_9874788_9874935_9876987
transcript_26371.known	chr18	+	4134	21	FSM	ENSMUSG00000024287.9	ENSMUST00000025137.9	4134	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	177.913574524262	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTTGTTTACACATTATG	NA	False	NA	NA	False	ATTAAA	-24	NA	9957905	9995489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9962372_9962492_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986356_9986552_9986604_9986690_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320
transcript_26373.nic	chr18	+	2305	20	NIC	ENSMUSG00000024287.9	novel	4134	21	NA	NA	5	0	intron_retention	FALSE	canonical	0	0	junction_16	182.47716815401	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTGTACAGTTGGCTGG	1	True	NA	14	True	AATAAA	-14	NA	9958167	9993725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9962372_9962492_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986604_9986690_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320
transcript_26375.nnic	chr18	+	1984	20	NIC	ENSMUSG00000024287.9	novel	4134	21	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_16	237.141378171329	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTGTACAGTTGGCTGG	6	True	NA	14	True	AATAAA	-14	NA	9958172	9993725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485_9960553_9963262_9963312_9963822_9963919_9968750_9968834_9970254_9970329_9975598_9975708_9977846_9977979_9984433_9984535_9986288_9986356_9986552_9986604_9986690_9986762_9987069_9987166_9987598_9987665_9989690_9989775_9992127_9992276_9992831_9992908_9993320
transcript_2638.known	chr1	+	787	3	FSM	ENSMUSG00000058267.14	ENSMUST00000097193.3	787	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	1371.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGAAAGTATGGTCTTTC	NA	False	NA	9	True	AATAAA	-9	NA	160022872	160027382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160023116_160024515_160024675_160026997
transcript_26384.known	chr18	-	4726	16	FSM	ENSMUSG00000047879.18	ENSMUST00000092096.14	4726	16	0	0	0	0	multi-exon	FALSE	canonical	3	792	junction_3	60.9526592255553	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAATGTGTTTTAAGTGA	-60	True	NA	NA	False	NA	NA	NA	10030141	9993065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
transcript_26387.known	chr18	-	2019	15	FSM	ENSMUSG00000047879.18	ENSMUST00000116669.2	2019	15	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_12	235.664107213151	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACACTTGATTATACACT	14	True	NA	-65	True	AATAAA	-15	NA	10030067	9995593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_9996249_9997172_9997281_9997716_9997775_10000494_10000624_10001770_10001864_10002367_10002434_10004895_10005011_10005629_10005716_10007766_10007848_10009951_10010083_10012212_10012272_10016540_10016645_10022817_10022851_10024533_10024680_10029912
transcript_26391.known	chr18	-	1346	7	FSM	ENSMUSG00000047879.18	ENSMUST00000128334.8	1346	7	0	0	0	0	multi-exon	FALSE	canonical	3	830	junction_4	53.4334996878259	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	0	True	NA	NA	False	NA	NA	NA	10030081	10009352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_10010083_10012212_10012272_10016540_10016645_10017990_10018096_10022817_10022851_10024533_10024680_10029912
transcript_26392.known	chr18	+	891	4	FSM	ENSMUSG00000024287.9	ENSMUST00000234890.2	891	4	0	0	0	0	multi-exon	FALSE	canonical	3	775	junction_2	35.5621521658443	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCTAGAAAATTATATGAGA	10	True	NA	NA	False	AATAGA	-36	NA	9958176	9961171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_9958247_9959097_9959172_9959254_9959316_9960485
transcript_26394.nnic	chr18	+	925	2	NNC	ENSMUSG00000042942.19	novel	8420	33	NA	NA	-21244	-4626	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	0	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTGTAGAAAATTCATATG	NA	False	NA	NA	False	AATAAA	-18	NA	10532541	10533663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_10532598_10532794
transcript_26395.known	chr18	-	4545	11	FSM	ENSMUSG00000024293.17	ENSMUST00000025142.13	4545	11	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_3	14.2393820090621	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTCACTAGCTTGCAATT	2	True	NA	-6	True	ATTAAA	-21	NA	10610352	10566506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000_10577091_10582054_10582187_10584247_10584363_10585977_10586042_10588438_10588551_10593745_10595876_10596338_10596442_10610025
transcript_26397.known	chr18	-	2148	10	FSM	ENSMUSG00000024293.17	ENSMUST00000115864.8	2148	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	44.3206609568756	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAAGTGATAAATGTACTT	245	False	10610134	-37	True	AATAAA	-25	NA	10610109	10566618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_10567647_10571954_10572143_10574874_10575019_10577000_10577091_10582054_10582187_10584247_10584363_10585977_10586042_10595675_10595876_10596338_10596442_10610025
transcript_26405.known	chr18	+	858	4	FSM	ENSMUSG00000002477.6	ENSMUST00000002551.5	858	4	0	0	0	0	multi-exon	FALSE	canonical	3	1823	junction_2	40.4337592722825	1144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCGGTGCATGTCTTTA	-32	True	NA	8	True	AATAAA	-15	NA	10617774	10628230	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_10617927_10623630_10623708_10626825_10627018_10627793
transcript_26407.known	chr18	+	439	4	FSM	ENSMUSG00000002477.6	ENSMUST00000234207.2	439	4	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	847.378047600689	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATAAGTGTAGGGACAGA	-11	True	NA	2	True	NA	NA	NA	10617795	10627955	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_10617927_10623630_10623708_10626948_10627018_10627793
transcript_26409.known	chr18	-	1962	9	FSM	ENSMUSG00000002475.17	ENSMUST00000117828.9	1962	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	3.63145976158349	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTTCTTTGTGAGTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	10706771	10644410	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_10645236_10647725_10647892_10647969_10648019_10652187_10652362_10658779_10658893_10682068_10682115_10704547_10704731_10706000_10706165_10706529
transcript_26415.known	chr18	+	3209	19	FSM	ENSMUSG00000041238.17	ENSMUST00000047322.8	3209	19	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	21.3625378803961	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAACTAAAATGTGGATG	3291	False	NA	9	True	ATTAAA	-31	NA	11790485	11875935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_11790750_11793791_11793999_11805638_11805682_11810651_11810748_11826068_11826182_11829799_11829867_11838748_11838925_11848790_11848896_11851889_11851988_11853601_11853715_11854696_11855583_11855660_11855788_11858463_11858553_11860229_11860342_11865246_11865388_11867532_11867603_11871629_11871727_11873982_11874125_11875672
transcript_2642.known	chr1	+	674	3	FSM	ENSMUSG00000058267.14	ENSMUST00000078878.14	674	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1378.5	959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGGTCTTTCCTTCAAGT	NA	False	NA	17	True	AATAAA	-17	NA	160022784	160027390	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160022882_160024490_160024675_160026997
transcript_26432.known	chr18	-	1426	15	FSM	ENSMUSG00000049411.16	ENSMUST00000209859.2	1426	15	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_4	4.03871569806491	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAACAAGACATGTATGT	NA	False	NA	NA	False	NA	NA	NA	12254587	12116132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_12116651_12126620_12126686_12176270_12176365_12180621_12180692_12191982_12192018_12197260_12197297_12200116_12200163_12201354_12201404_12203136_12203189_12207674_12207701_12217048_12217127_12237155_12237238_12246451_12246530_12251460_12251508_12254437
transcript_26438.known	chr18	+	3790	13	FSM	ENSMUSG00000024404.8	ENSMUST00000025270.8	3790	13	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_8	18.23058327829	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGTGATTGGAGAGAATT	5505	False	NA	NA	False	NA	NA	NA	12261797	12290444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_12262031_12268908_12269025_12269749_12269896_12269984_12270093_12270296_12270407_12272373_12272518_12275992_12276121_12281847_12282046_12282575_12282736_12285855_12285937_12286027_12286118_12286969_12287078_12288276
transcript_26450.known	chr18	+	2170	20	FSM	ENSMUSG00000024410.16	ENSMUST00000025276.15	2170	20	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_9	24.4724957266604	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAATGTTGCTAACTCCC	NA	False	NA	NA	False	AATAAA	-45	NA	12301773	12323054	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
transcript_26451.nnic	chr18	+	2030	20	NNC	ENSMUSG00000024410.16	novel	2170	20	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_18	69.772721653814	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAATAAAGTACCTACAAC	NA	False	NA	NA	False	AATAAA	-22	NA	12301766	12323031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322340_12322443_12322862
transcript_26453.known	chr18	+	2297	19	FSM	ENSMUSG00000024410.16	ENSMUST00000127123.8	2297	19	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_9	24.871831952861	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAATAAAGTACCTACAAC	NA	False	NA	NA	False	AATAAA	-22	NA	12301808	12323031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
transcript_26454.nic	chr18	+	2051	19	NIC	ENSMUSG00000024410.16	novel	2170	20	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	65.1417258325602	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAATAAAGTACCTACAAC	NA	False	NA	NA	False	AATAAA	-22	NA	12301792	12323031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_12301960_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722_12313829_12314640_12314753_12317035_12317081_12317265_12317320_12317948_12318078_12318705_12318813_12321265_12321386_12321616_12321695_12321876_12321982_12322069_12322139_12322216_12322443_12322862
transcript_26458.known	chr18	+	1282	9	FSM	ENSMUSG00000024410.16	ENSMUST00000126523.9	1282	9	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_6	11.1740491765519	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATTTGATTTGATGTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	12301773	12314177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_12301960_12302289_12302367_12304605_12304691_12309193_12309251_12311244_12311332_12312169_12312311_12312545_12312650_12313541_12313632_12313722
transcript_2646.known	chr1	-	2098	6	FSM	ENSMUSG00000014226.11	ENSMUST00000014370.11	2098	6	0	0	0	0	multi-exon	FALSE	canonical	3	4235	junction_5	193.777810907235	1207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAAAAAAAAAAAAAGGA	7296	False	NA	NA	False	TATAAA	-11	NA	160040445	160029936	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_160031294_160032537_160032636_160033665_160033766_160034182_160034280_160035948_160036166_160040216
transcript_26462.nnic	chr18	-	1539	3	NNC	ENSMUSG00000101406.2	novel	1085	2	NA	NA	-305	599	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	0.5	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTAGCCTCCTCTTTTAC	6579	False	NA	NA	False	AATAAA	-28	NA	12637788	12633647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_12634942_12637093_12637209_12637658
transcript_26464.known	chr18	+	1950	14	FSM	ENSMUSG00000024424.16	ENSMUST00000169401.8	1950	14	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	13.7926315977239	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCCTGTGACCTTGCAGGA	NA	False	NA	2	True	AATAAA	-16	NA	12732982	12870107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_12733061_12817893_12817943_12820008_12820138_12822829_12822945_12828292_12828648_12830947_12831117_12853006_12853101_12857995_12858104_12861676_12861787_12863050_12863175_12866014_12866113_12867943_12868049_12869036_12869076_12869730
transcript_26468.known	chr18	+	1910	14	FSM	ENSMUSG00000024424.16	ENSMUST00000234255.2	1910	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	17.4637409658043	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAATGCCCGACCTGGGAGA	NA	False	NA	-90	True	AATAAA	-17	NA	12732952	12870015	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_12733061_12817893_12817943_12820008_12820138_12822829_12822945_12828292_12828648_12830947_12831117_12853006_12853101_12857995_12858104_12861676_12861787_12863050_12863175_12866014_12866113_12867943_12868049_12869014_12869076_12869730
transcript_26469.known	chr18	-	3956	28	FSM	ENSMUSG00000044252.19	ENSMUST00000074352.11	3956	28	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_13	124.793898676083	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTCAGTTGATATTGT	NA	False	NA	-8	True	AATAAA	-39	NA	13074898	12888370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_13004134_13004242_13015252_13015335_13025223_13025347_13031259_13031359_13038079_13038144_13038250_13038325_13039027_13039073_13039944_13040007_13042914_13043060_13044133_13044220_13047558_13047671_13061317_13061393_13062064_13062151_13066636_13066760_13074688
transcript_26474.known	chr18	-	3030	14	FSM	ENSMUSG00000044252.19	ENSMUST00000121808.8	3030	14	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_13	88.7068171466208	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTCAGTTGATATTGT	NA	False	NA	-8	True	AATAAA	-39	NA	12995730	12888370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12995163
transcript_26475.known	chr18	-	2818	14	FSM	ENSMUSG00000044252.19	ENSMUST00000234871.2	2818	14	0	0	0	0	multi-exon	TRUE	canonical	3	45	junction_13	91.3749671156418	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12996497	12888384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996128
transcript_26476.nnic	chr18	-	2508	14	NNC	ENSMUSG00000044252.19	novel	2818	14	NA	NA	-27	0	intron_retention	FALSE	canonical	3	33	junction_13	94.3034884243106	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12996464	12888384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996405
transcript_26480.nnic	chr18	-	1644	14	NNC	ENSMUSG00000044252.19	novel	1947	15	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_13	94.3034884243106	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGTGTTTGCTAATCTAA	NA	False	NA	-11	True	ATTAAA	-13	NA	12996464	12889248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12974240_12974404_12996405
transcript_26482.known	chr18	-	2893	13	FSM	ENSMUSG00000044252.19	ENSMUST00000118313.8	2893	13	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_12	94.3352473304061	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12995770	12888384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12995163
transcript_26484.nnic	chr18	-	2336	13	NNC	ENSMUSG00000044252.19	novel	2818	14	NA	NA	-18	0	intron_retention	FALSE	canonical	2	8	junction_12	103.510969628022	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAATGCTTTCAGAATT	NA	False	NA	-22	True	AATAAA	-25	NA	12996455	12888384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12996405
transcript_26486.nnic	chr18	-	1734	13	NIC	ENSMUSG00000044252.19	novel	2818	14	NA	NA	-3	0	combination_of_known_splicesites	TRUE	canonical	3	22	junction_12	99.8294030945904	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGTGTTTGCTAATCTAA	NA	False	NA	-11	True	ATTAAA	-13	NA	12996440	12889248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12996128
transcript_26487.nnic	chr18	-	1472	13	NNC	ENSMUSG00000044252.19	novel	1947	15	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_12	103.510969628022	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGTGTTTGCTAATCTAA	NA	False	NA	-11	True	ATTAAA	-13	NA	12996455	12889248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_12889365_12890664_12890756_12891823_12891948_12892455_12892573_12895622_12895750_12895965_12896056_12896538_12896647_12899859_12900043_12901594_12901693_12904355_12904491_12921376_12921453_12952561_12952719_12996405
transcript_26490.known	chr18	-	1203	12	FSM	ENSMUSG00000044252.19	ENSMUST00000122175.8	1203	12	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	11.4285419125947	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTTACAGTAAGTACAATT	NA	False	NA	NA	False	AATAAA	-21	NA	13074834	13031173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_13031359_13038079_13038144_13038250_13038325_13039027_13039073_13039944_13040007_13042914_13043060_13044133_13044220_13047558_13047671_13061317_13061393_13062064_13062151_13066636_13066760_13074688
transcript_26491.known	chr18	+	3763	11	FSM	ENSMUSG00000024423.7	ENSMUST00000025290.7	3763	11	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_9	40.2394085443611	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTTATGGCTACATTGCA	NA	False	NA	16	True	NA	NA	NA	13104979	13126007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_13105430_13107769_13107899_13109035_13109089_13109525_13109589_13115146_13115233_13117295_13117422_13118275_13118374_13119380_13119455_13121351_13121443_13122801_13122937_13123549
transcript_26495.known	chr18	-	3098	11	FSM	ENSMUSG00000037013.18	ENSMUST00000040924.9	3098	11	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_3	289.216597034126	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGTTTCTTTAAATTAG	NA	False	NA	-13	True	AATAAA	-23	NA	14815971	14758679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
transcript_26498.known	chr18	-	4153	10	FSM	ENSMUSG00000037013.18	ENSMUST00000040964.13	4153	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	374.482193942845	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCGACCCTCCTATTTGTT	NA	False	NA	NA	False	AATAAA	-33	NA	14815823	14757254	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14770448_14770542_14773313_14773419_14774012_14774181_14788083_14788238_14803365_14803451_14812443_14812521_14815723
transcript_265.known	chr1	+	3239	14	FSM	ENSMUSG00000025911.15	ENSMUST00000144177.8	3239	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	25.1132346823944	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTGATGCTTTTCCTAA	NA	False	NA	NA	False	TATAAA	-22	NA	9618172	9648195	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_9618377_9620131_9620170_9621941_9621983_9623147_9623202_9623542_9623698_9623847_9624045_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
transcript_26500.known	chr18	-	2911	10	FSM	ENSMUSG00000037013.18	ENSMUST00000092041.11	2911	10	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_3	115.228382991837	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTCTCATTTGTTTCTT	NA	False	NA	-21	True	AATAAA	-15	NA	14815885	14758687	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
transcript_26503.known	chr18	-	2603	9	FSM	ENSMUSG00000037013.18	ENSMUST00000234524.2	2603	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	300.413048984228	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAATAAATTATTTGTGA	NA	False	NA	-45	True	TTTAAA	-19	NA	14815823	14758711	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_14760369_14766599_14766734_14769552_14769676_14773313_14773419_14774012_14774181_14788083_14788238_14803365_14803451_14812443_14812521_14815723
transcript_26504.nnic	chr18	-	2781	9	NIC	ENSMUSG00000037013.18	novel	2911	10	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_3	296.915812984085	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCATTTGTTTCTTTA	NA	False	NA	-19	True	AATAAA	-17	NA	14815858	14758685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_-_14760369_14766599_14766734_14769552_14769676_14774012_14774181_14784079_14784302_14788083_14788238_14803365_14803451_14812443_14812521_14815723
transcript_26511.known	chr18	-	164	1	FSM	ENSMUSG00000094306.3	ENSMUST00000084007.4	164	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	14780987	14780823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_14780800_14781000
transcript_26514.known	chr18	+	1692	7	FSM	ENSMUSG00000036743.5	ENSMUST00000040860.3	1692	7	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_2	7.18795288428261	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAGAGTGTCTCCTTCAA	NA	False	NA	10	True	NA	NA	NA	14839207	14895355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_14839390_14854223_14854351_14859560_14859686_14864035_14864159_14890338_14890459_14890678_14890742_14894403
transcript_26515.nic	chr18	+	1541	6	NIC	ENSMUSG00000036743.5	novel	1692	7	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	33.7792835921664	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAGAGTGTCTCCTTCAA	NA	False	NA	10	True	NA	NA	NA	14839231	14895355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_14839390_14859560_14859686_14864035_14864159_14890338_14890459_14890678_14890742_14894403
transcript_26516.nnic	chr18	+	787	5	NNC	ENSMUSG00000036743.5	novel	1023	6	NA	NA	-35	658	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_4	35.0142828000232	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTACACTTATTTATT	NA	False	NA	NA	False	NA	NA	NA	14839172	14865186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_14839390_14854223_14854351_14859560_14859686_14864035_14864159_14864991
transcript_26517.nnic	chr18	+	616	3	NNC	ENSMUSG00000036743.5	novel	1023	6	NA	NA	-35	-8709	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_2	43	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATTGTGTTTTATCATTC	NA	False	NA	NA	False	NA	NA	NA	14839172	14855819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_14839390_14854223_14854351_14855547
transcript_26518.known	chr18	+	1918	7	FSM	ENSMUSG00000036743.5	ENSMUST00000234922.2	1918	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	35.6436841841892	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTGTCTCCTTCAAAGG	NA	False	NA	13	True	NA	NA	NA	14839259	14895358	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_14839665_14854223_14854351_14859560_14859686_14864035_14864159_14890338_14890459_14890678_14890742_14894403
transcript_26519.known	chr18	+	534	1	FSM	ENSMUSG00000058064.7	ENSMUST00000079733.7	534	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7472	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAACTTGATCCAAAAAGCC	NA	False	NA	NA	False	NA	NA	NA	15965850	15966384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_15965800_15966400
transcript_26520.known	chr18	+	5766	15	FSM	ENSMUSG00000044393.16	ENSMUST00000059787.15	5766	15	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_4	15.0483913303932	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAACCTCTCTCCATGTCT	NA	False	NA	10	True	AATAAA	-19	NA	20691130	20737578	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_20691402_20706545_20706582_20707996_20708132_20712096_20712259_20712390_20712536_20713568_20713736_20715764_20715903_20715993_20716180_20723004_20723271_20724890_20725034_20725328_20725557_20727120_20727349_20729016_20729139_20731395_20731726_20734369
transcript_26522.nnic	chr18	+	988	4	Antisense	novelGene_ENSMUSG00002076630.1_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	7.93025150224688	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTTTGTTTGTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	20895474	20997370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr18_+_20895821_20951304_20951388_20963808_20964032_20997034
transcript_26526.known	chr18	+	1348	6	FSM	ENSMUSG00000033107.7	ENSMUST00000050004.3	1348	6	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	22.5335305711289	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAAGCTGGGTGTGGTGGCG	5341	False	NA	NA	False	NA	NA	NA	21077681	21116919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_21077815_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
transcript_26527.known	chr18	+	1406	6	FSM	ENSMUSG00000033107.7	ENSMUST00000234316.2	1406	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	19.3349424617711	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTTCTGCGTTTGAAGTGT	1219	False	NA	NA	False	AATATA	-11	NA	21094528	21116781	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_21094858_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
transcript_26528.nnic	chr18	+	1464	6	NNC	ENSMUSG00000033107.7	novel	1348	6	NA	NA	386	162	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	47.3767875652202	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTTGATAGAAGAT	1605	False	NA	NA	False	NA	NA	NA	21094914	21117081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_21095002_21107355_21107513_21110785_21110881_21112107_21112199_21114227_21114336_21116155
transcript_26530.known	chr18	+	2422	8	FSM	ENSMUSG00000024317.16	ENSMUST00000234107.2	2422	8	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	133.739008703443	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTGTAAAAAACCTTTT	NA	False	NA	10	True	AATAAA	-21	NA	21134397	21160592	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
transcript_26536.known	chr18	+	3002	7	FSM	ENSMUSG00000024317.16	ENSMUST00000072847.12	3002	7	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	148.868416917611	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTGTGTGTCTTAATTAAA	NA	False	NA	2	True	ATTAAA	-14	NA	21134397	21161280	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_21134598_21135013_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
transcript_26541.known	chr18	+	2271	7	FSM	ENSMUSG00000024317.16	ENSMUST00000234536.2	2271	7	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_6	95.8227530391399	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTTTGTAAAAAACCTTTT	NA	False	NA	10	True	AATAAA	-21	NA	21134964	21160592	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21157465_21157574_21159142
transcript_26549.known	chr18	+	2769	6	FSM	ENSMUSG00000024317.16	ENSMUST00000052396.7	2769	6	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_5	108.138799697426	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGTGTCTTAATTAAAA	NA	False	NA	3	True	ATTAAA	-15	NA	21135047	21161281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21150875_21150933_21153944_21154057_21159142
transcript_2655.known	chr1	+	502	12	FSM	ENSMUSG00000053332.14	ENSMUST00000162558.8	502	12	0	0	0	0	multi-exon	FALSE	canonical	3	1206	junction_7	1656.43137771865	1425	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	20	True	ATTAAA	-16	NA	160862732	160866107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_26557.known	chr18	+	1769	5	FSM	ENSMUSG00000024317.16	ENSMUST00000234545.2	1769	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	174.891930917353	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAAATCTCTGAAGTA	NA	False	NA	NA	False	TTTAAA	-13	NA	21135151	21160442	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_21135227_21141781_21141948_21143733_21143850_21153944_21154057_21159142
transcript_26563.nnic	chr18	+	2759	17	NNC	ENSMUSG00000024313.9	novel	617	7	NA	NA	-341	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_6	16.5481069536669	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGTGATCTTTCTCCC	NA	False	NA	9	True	AATAAA	-21	NA	21194638	21233256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_21194811_21194905_21195074_21200485_21200594_21203810_21203948_21208707_21208759_21209403_21209445_21213486_21213566_21217135_21217254_21219218_21219398_21221601_21221821_21222381_21222535_21224130_21224347_21226277_21226722_21227980_21228161_21229185_21229319_21230344_21230550_21233100
transcript_26567.known	chr18	-	418	3	FSM	ENSMUSG00000086287.2	ENSMUST00000132571.2	418	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTAAATGGCTTTATTAATG	NA	False	NA	NA	False	ATTAAA	-17	NA	23885362	23883503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_23883617_23884636_23884881_23885301
transcript_26568.known	chr18	+	3936	8	FSM	ENSMUSG00000024277.15	ENSMUST00000170802.8	3936	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	61.3021955860756	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGACTTATTCTTACGTT	1806	False	NA	18	True	AATAAA	-22	NA	23885389	24026918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_23885478_23905660_23905717_23965909_23966038_23986710_23986857_23991000_23991215_24011000_24011141_24016594_24016754_24023913
transcript_26569.known	chr18	+	4026	7	FSM	ENSMUSG00000024277.15	ENSMUST00000025127.5	4026	7	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_6	13.0596920161065	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTCTGGACTTATTCTTA	NA	False	NA	14	True	AATAAA	-18	NA	23937040	24026914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_23937279_23965909_23966038_23986710_23986857_23991000_23991215_24011000_24011141_24016594_24016754_24023913
transcript_26572.known	chr18	+	3040	3	FSM	ENSMUSG00000063281.10	ENSMUST00000074941.8	3040	3	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	18.5	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATTTCTTACTGGGACA	1059	False	NA	NA	False	AATAAA	-26	NA	24122688	24138433	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_24122789_24123234_24123448_24135706
transcript_26575.nic	chr18	-	3618	4	NIC	ENSMUSG00000051469.15	novel	5732	4	NA	NA	-16	1653	combination_of_known_junctions	FALSE	canonical	3	27	junction_3	102.009803450453	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTAGCTTGGAATTGCC	NA	False	NA	NA	False	AATAAA	-24	NA	24153443	24145328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_-_24147743_24150340_24150489_24150724_24151226_24152888
transcript_26576.known	chr18	-	5732	4	FSM	ENSMUSG00000051469.15	ENSMUST00000066497.12	5732	4	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_3	47.8957200593122	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGCCATGTGTTACCTT	NA	False	NA	NA	False	AATAAA	-36	NA	24153867	24142758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153768
transcript_26581.known	chr18	-	1513	4	FSM	ENSMUSG00000051469.15	ENSMUST00000153337.2	1513	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	83.8212383587835	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTCTTGTGAAGTTTATA	NA	False	NA	NA	False	TTTAAA	-24	NA	24153377	24146981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_24147743_24150340_24150489_24150724_24151226_24153274
transcript_26582.known	chr18	-	2498	5	FSM	ENSMUSG00000047989.12	ENSMUST00000153360.8	2498	5	0	0	0	0	multi-exon	FALSE	canonical	3	634	junction_3	55.0789206502814	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGGGGTGTTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	24255010	24237813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_24239716_24244771_24244840_24245717_24245830_24247133_24247245_24254705
transcript_26585.known	chr18	+	3977	13	FSM	ENSMUSG00000000420.16	ENSMUST00000000430.14	3977	13	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	166.935283534934	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACTCTGAGTAGTTGTG	NA	False	NA	16	True	ATTAAA	-27	NA	24338400	24419875	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_24338576_24365655_24365711_24371298_24371543_24379106_24379282_24387574_24387742_24397381_24397590_24400584_24400756_24402504_24402623_24404642_24404824_24405718_24405859_24413000_24413100_24415158_24415294_24417766
transcript_26588.known	chr18	+	1065	5	FSM	ENSMUSG00000024273.9	ENSMUST00000097646.5	1065	5	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_2	17.066048165876	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAATGGTAGTATTTAATT	359	False	NA	17	True	GATAAA	-14	NA	24603925	24610855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_24604038_24604118_24604142_24606006_24606207_24608581_24608782_24610325
transcript_26589.known	chr18	+	1146	5	FSM	ENSMUSG00000024273.9	ENSMUST00000235029.2	1146	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	81.3910314469598	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGAATGGTAGTATTTAATT	340	False	NA	17	True	GATAAA	-14	NA	24603906	24610855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_24604038_24604118_24604204_24606006_24606207_24608581_24608782_24610325
transcript_26597.known	chr18	-	4299	7	FSM	ENSMUSG00000040446.5	ENSMUST00000046206.5	4299	7	0	0	0	0	multi-exon	FALSE	canonical	3	196	junction_1	46.8807589054993	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGTTTGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-20	NA	24663261	24618016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_24621389_24639890_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
transcript_26600.nic	chr18	-	2371	6	ISM	ENSMUSG00000040446.5	ENSMUST00000046206.5	4299	7	-37	20467	-37	0	5prime_fragment	FALSE	canonical	3	215	junction_1	43.046951111548	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTCTCATGTTTTTGA	NA	False	NA	-1	True	AATAAA	-18	NA	24663298	24638483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr18_-_24640067_24640161_24640289_24641050_24641149_24641226_24641334_24642849_24642980_24662972
transcript_26602.known	chr18	-	2950	5	FSM	ENSMUSG00000040446.5	ENSMUST00000234403.2	2950	5	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_1	46.5886252211846	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGTCTCATGTTTTTGA	NA	False	NA	-1	True	AATAAA	-18	NA	24663115	24638483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_24640067_24640161_24641149_24641226_24641334_24642849_24642980_24662972
transcript_26604.known	chr18	+	3466	22	FSM	ENSMUSG00000024271.9	ENSMUST00000234266.2	3466	22	0	0	0	0	multi-exon	FALSE	canonical	3	667	junction_5	86.0279973411599	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAGAGTCACCTGAGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	24737017	24772564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_24737190_24739913_24739993_24742686_24742758_24744969_24745127_24745504_24745583_24747472_24747538_24748217_24748285_24748945_24749084_24750457_24750554_24752134_24752236_24752438_24752571_24755135_24755295_24755535_24755725_24758568_24758636_24759181_24759275_24759444_24759503_24760051_24760125_24764415_24764609_24765815_24765938_24767395_24767530_24767957_24768066_24771450
transcript_26614.known	chr18	-	3882	10	FSM	ENSMUSG00000024270.12	ENSMUST00000070726.10	3882	10	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_5	10.1153837126587	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTTGTTCTCTTTCTTCT	NA	False	NA	0	True	ATTAAA	-18	NA	24736874	24712937	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_24714135_24715373_24715565_24717076_24717158_24718182_24718561_24722803_24722910_24729322_24729542_24730799_24730970_24732286_24732471_24733871_24734697_24736343
transcript_26617.known	chr18	+	2903	15	FSM	ENSMUSG00000039616.11	ENSMUST00000068006.9	2903	15	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	5.18878303533257	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGCCTGCCATTATTGAG	NA	False	NA	15	True	ATTAAA	-15	NA	24786747	24834632	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_24787125_24793046_24793137_24797073_24797141_24799066_24799709_24803621_24803699_24807287_24807488_24809616_24809734_24812442_24812869_24816185_24816349_24819683_24819763_24821994_24822120_24825574_24825681_24828930_24829070_24832909_24833015_24834442
transcript_26618.known	chr18	+	5351	11	FSM	ENSMUSG00000033632.17	ENSMUST00000097643.10	5351	11	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_9	9.53100204595508	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAGTGTAATAATTTTTT	NA	False	NA	12	True	AATAAA	-21	NA	25302076	25600378	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25336917_25337034_25422995_25423124_25472770_25473442_25477920_25478020_25532982_25533165_25553023_25553133_25596673
transcript_26619.known	chr18	+	1427	6	FSM	ENSMUSG00000033632.17	ENSMUST00000162149.2	1427	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	7.56306816047562	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAACAAACACAA	NA	False	NA	NA	False	NA	NA	NA	25302076	25423965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25336917_25337034_25422995
transcript_26620.known	chr18	+	1021	5	FSM	ENSMUSG00000033632.17	ENSMUST00000161262.8	1021	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	17.7200451466693	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATAGAGAGGAAATGAAA	NA	False	NA	NA	False	AATAAA	-5	NA	25302070	25322290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_25302144_25307743_25307780_25308399_25308543_25315111_25315207_25321616
transcript_26626.known	chr18	-	4159	7	FSM	ENSMUSG00000024269.12	ENSMUST00000115817.3	4159	7	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_5	17.5823459438406	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGGTATCTTCAACAAAAT	NA	False	NA	NA	False	AATAAA	-22	NA	25302064	25269093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_25272197_25273502_25273664_25274577_25274695_25282170_25282300_25284256_25284345_25291300_25291381_25301583
transcript_26629.nnic	chr18	-	1865	11	NNC	ENSMUSG00000024268.17	novel	2492	13	NA	NA	-3877	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	11.6858889263932	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAAAAAACAAGGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	25638173	25612134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_25612769_25619850_25620023_25620296_25620376_25624197_25624282_25629278_25629360_25630521_25630588_25634257_25634408_25635989_25636138_25637195_25637340_25637545_25637626_25637946
transcript_26635.nic	chr18	-	1082	6	ISM	ENSMUSG00000024268.17	ENSMUST00000223704.2	2492	13	248867	18120	-3877	7022	internal_fragment	FALSE	canonical	3	20	junction_1	5.17687164221791	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGTCTGCATCCCACT	NA	False	NA	NA	False	AGTAAA	-15	NA	25638173	25630254	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr18_-_25630588_25634257_25634408_25635989_25636138_25637195_25637340_25637545_25637626_25637946
transcript_26638.known	chr18	+	3257	25	FSM	ENSMUSG00000033628.16	ENSMUST00000115812.10	3257	25	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_11	21.8495089571063	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCCTTGTTTTCCCTGTC	NA	False	NA	12	True	AGTAAA	-23	NA	30405799	30481179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_30406072_30407321_30407511_30410024_30410169_30415009_30415140_30421803_30421891_30423523_30423620_30426111_30426184_30426671_30426777_30427388_30427482_30431625_30431812_30435972_30436128_30436618_30436710_30438027_30438096_30444272_30444379_30445604_30445722_30449895_30450028_30452553_30452683_30453286_30453357_30455222_30455288_30456574_30456660_30457596_30457672_30466213_30466383_30469146_30469238_30477003_30477130_30480775
transcript_26640.known	chr18	-	4371	8	FSM	ENSMUSG00000024259.10	ENSMUST00000060396.7	4371	8	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_7	28.1852472628023	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCAATATATATGTTTCT	NA	False	NA	NA	False	GATAAA	-12	NA	31742955	31713220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_31716823_31727629_31727688_31730091_31730149_31733184_31733286_31735775_31735854_31738805_31738864_31740274_31740318_31742581
transcript_26648.known	chr18	+	3385	8	FSM	ENSMUSG00000041915.10	ENSMUST00000115808.4	3385	8	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_2	12.315578321287	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCTAAACTTCACCCCT	6921	False	NA	NA	False	TTTAAA	-26	NA	31892932	31915796	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_31893248_31894832_31894944_31904722_31905168_31907288_31907400_31907689_31907805_31909039_31909131_31911909_31912007_31913696
transcript_26652.known	chr18	+	1015	4	FSM	ENSMUSG00000024258.5	ENSMUST00000025106.5	1015	4	0	0	0	0	multi-exon	FALSE	canonical	3	694	junction_1	16.2138486760204	603	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGAATTGTATTTATTT	NA	False	NA	21	True	AATAAA	-20	NA	31922211	31929754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_31922298_31924892_31925074_31928340_31928437_31929102
transcript_26654.known	chr18	+	706	3	FSM	ENSMUSG00000024258.5	ENSMUST00000234146.2	706	3	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	315.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTAGAATGATGTTCAAACA	NA	False	NA	NA	False	NA	NA	NA	31922212	31929542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_31922298_31924892_31925074_31929102
transcript_26655.known	chr18	+	4575	22	FSM	ENSMUSG00000024400.17	ENSMUST00000025264.8	4575	22	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_7	93.6872299310541	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCAGCACCCACTGTGCAG	5655	False	NA	39	True	AATACA	-22	NA	31937150	32040450	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_32011076_32011204_32012723_32012879_32012990_32013070_32014224_32014336_32018428_32018524_32019069_32019157_32019707_32019848_32020749_32020903_32021122_32022194_32026042_32026152_32029653_32030090_32035376_32035541_32035634_32035731_32037288_32037505_32039818
transcript_26657.nic	chr18	+	1803	15	ISM	ENSMUSG00000024400.17	ENSMUST00000025264.8	4575	22	-32	19628	-24	1399	5prime_fragment	FALSE	canonical	3	169	junction_7	107.163712256014	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAGAAGAGAAGAAAAAAACC	5623	False	NA	NA	False	NA	NA	NA	31937118	32020822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_32011076_32011204_32012723_32012879_32012990_32013070_32014224_32014336_32018428_32018524_32019069_32019157_32019707_32019848_32020749
transcript_26658.known	chr18	+	1415	8	FSM	ENSMUSG00000024400.17	ENSMUST00000234957.2	1415	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	161.118412532966	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CCCAAAAAACCAAAAAAAAA	5650	False	NA	NA	False	NA	NA	NA	31937145	31974994	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635_31966788_31968436_31968535_31974488
transcript_26659.known	chr18	+	2416	6	FSM	ENSMUSG00000024400.17	ENSMUST00000234344.2	2416	6	0	0	0	0	multi-exon	FALSE	canonical	3	387	junction_4	31.1088411870323	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCACTGTTAGAATCT	5733	False	NA	7	True	AATAAA	-18	NA	31937228	31968475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_31937308_31960314_31960542_31962284_31962354_31962927_31963033_31966362_31966459_31966635
transcript_26663.known	chr18	+	9613	14	FSM	ENSMUSG00000024384.5	ENSMUST00000025243.5	9613	14	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_3	17.4029855290822	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACACTAATGCTGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	32200793	32237381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_32201093_32203159_32203276_32212723_32213631_32216318_32216512_32217231_32217290_32217705_32217804_32219325_32219477_32220122_32220206_32221308_32221439_32222441_32222560_32223481_32223594_32224198_32224256_32226170_32226283_32230202
transcript_26667.known	chr18	+	2708	15	FSM	ENSMUSG00000024382.14	ENSMUST00000025241.7	2708	15	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_6	14.4393524078881	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTCTCTATTTTATTG	NA	False	NA	NA	False	TATAAA	-24	NA	32373352	32403204	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_32373475_32373682_32373889_32376016_32376254_32377851_32377902_32378541_32378678_32378804_32378973_32379619_32379825_32381215_32381531_32387133_32387319_32390242_32390446_32394354_32394452_32397600_32397719_32398670_32398790_32400216_32400370_32402810
transcript_26671.known	chr18	+	2091	15	FSM	ENSMUSG00000024381.17	ENSMUST00000091967.13	2091	15	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_10	7.8846919627173	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACGAGGCGTGTCTTTCTT	NA	False	NA	16	True	AAAAAG	-23	NA	32510297	32568790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32559276_32559406_32564723_32564796_32565035_32565147_32565376_32565479_32568187
transcript_26672.known	chr18	+	1530	14	FSM	ENSMUSG00000024381.17	ENSMUST00000234857.2	1530	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_10	8.17631157710597	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTTTTCTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	32510282	32568343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32564723_32564796_32565035_32565147_32565376_32565479_32568187
transcript_26674.known	chr18	+	1886	13	FSM	ENSMUSG00000024381.17	ENSMUST00000234496.2	1886	13	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_10	7.81024967590665	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGAACGAGGCGTGTCTT	NA	False	NA	12	True	AAAAAG	-19	NA	32510297	32568786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_32510544_32539152_32539234_32545473_32545529_32545669_32545765_32546147_32546244_32547235_32547344_32552895_32552982_32553121_32553198_32554930_32555014_32557872_32558021_32565035_32565147_32565376_32565479_32568187
transcript_26678.known	chr18	+	2906	24	FSM	ENSMUSG00000038299.17	ENSMUST00000166214.9	2906	24	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_23	153.127237455201	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGGGTTCTTTTTTTCT	9050	False	NA	14	True	ATTAAA	-7	NA	32970363	32999453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905_32998972_32999240
transcript_26679.nnic	chr18	+	3174	24	NNC	ENSMUSG00000038299.17	novel	2906	24	NA	NA	2	-50	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_23	158.489013770111	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGTATCTGTAATATACTTA	8966	False	NA	-36	True	ATTAAA	-19	NA	32970279	32999403	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905_32999191_32999225
transcript_26680.known	chr18	+	4455	23	FSM	ENSMUSG00000038299.17	ENSMUST00000053663.11	4455	23	0	0	0	0	multi-exon	FALSE	canonical	3	587	junction_7	67.2070318044693	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTACAAAGTTTGTCCTG	8964	False	NA	NA	False	NA	NA	NA	32970277	33000647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_32970612_32972484_32972513_32974095_32974197_32974949_32975068_32976814_32976948_32978643_32978699_32979882_32980016_32980194_32980371_32980641_32980763_32981348_32981415_32982125_32982213_32983439_32983589_32985033_32985149_32985537_32985704_32985916_32986026_32987832_32987913_32992272_32992381_32994079_32994178_32994554_32994701_32995977_32996098_32996233_32996316_32997705_32997894_32998905
transcript_26683.known	chr18	+	2717	11	FSM	ENSMUSG00000038128.8	ENSMUST00000042868.6	2717	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	3.0347981810987	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAGCTTTTCCAATGGAGG	4783	False	NA	NA	False	ATTAAA	-17	NA	33072210	33319323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_33072598_33211045_33211125_33240932_33240996_33242817_33242901_33262813_33262887_33289801_33289893_33291879_33291955_33309211_33309288_33312550_33312678_33315290_33315444_33317813
transcript_26686.known	chr18	-	5097	6	FSM	ENSMUSG00000024378.10	ENSMUST00000025236.9	5097	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	4.66476151587624	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAGATGTATATTTTTA	NA	False	NA	-80	True	AATAAA	-14	NA	33346915	33332407	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_33336869_33338103_33338219_33339172_33339300_33341229_33341280_33342095_33342211_33346686
transcript_26689.known	chr18	-	843	5	FSM	ENSMUSG00000042834.16	ENSMUST00000237066.2	843	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	20.2854627751008	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGTCTTCCACAACTCAA	NA	False	NA	NA	False	NA	NA	NA	33596907	33571491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_33571893_33575868_33575947_33595073_33595141_33596430_33596473_33596652
transcript_26691.known	chr18	-	2185	5	FSM	ENSMUSG00000042834.16	ENSMUST00000168890.2	2185	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	6.79613860953409	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCTTTGGCTCATTATT	NA	False	NA	-4	True	AATAAA	-20	NA	33597082	33570071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_33571893_33575868_33575947_33595073_33595141_33596430_33596473_33596905
transcript_26692.known	chr18	-	659	4	FSM	ENSMUSG00000042834.16	ENSMUST00000051087.16	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	5.90668171555645	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTGTATGGGGTTTTGAT	NA	False	NA	NA	False	NA	NA	NA	33596792	33571740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_33571893_33575868_33575947_33595073_33595141_33596430
transcript_26694.known	chr18	+	430	3	FSM	ENSMUSG00000087590.3	ENSMUST00000146010.3	430	3	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_1	24	1279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACACGTGTATGTTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	33927944	33929039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_33928178_33928435_33928499_33928905
transcript_26696.known	chr18	+	303	2	FSM	ENSMUSG00000087590.3	ENSMUST00000179138.2	303	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCGATGTGCTGTTCTGA	NA	False	NA	-2	True	AATAAA	-2	NA	33927991	33929022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_33928178_33928905
transcript_26697.known	chr18	-	3566	24	FSM	ENSMUSG00000024376.8	ENSMUST00000025234.7	3566	24	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_23	34.3352756377329	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTGGTCTCTTTACTG	NA	False	NA	0	True	AATAAA	-13	NA	34139972	33929379	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34054882_34054988_34139037_34139476_34139821
transcript_26700.nnic	chr18	-	2368	22	NNC	ENSMUSG00000024376.8	novel	3566	24	NA	NA	-29011	-42	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_21	43.4022999066663	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAAGTGTCCTTGTCTTGT	NA	False	NA	-4	True	NA	NA	NA	34054038	33930011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_33930524_33931560_33931643_33931743_33931855_33934623_33934693_33935565_33935614_33943271_33943392_33957511_33957590_33958459_33958508_33961156_33961271_33961779_33961864_33965647_33965739_33987288_33987411_33992594_33992673_33994198_33994291_34007194_34007259_34007790_34007880_34009961_34010050_34011964_34012086_34013239_34013338_34019403_34019483_34024477_34024530_34053910
transcript_2671.known	chr1	+	557	11	FSM	ENSMUSG00000053332.14	ENSMUST00000159706.8	557	11	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_7	1053.46856146731	3092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGTGAAGTGTGCATTTT	NA	False	NA	20	True	ATTAAA	-16	NA	160862636	160866107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_26711.known	chr18	+	956	6	FSM	ENSMUSG00000014504.17	ENSMUST00000142010.2	956	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	757.224141189384	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTTGTTCATCTTTAAG	NA	False	NA	-42	True	AATAAA	-12	NA	34464228	34469606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_34464313_34464802_34464879_34465958_34466116_34467345_34467418_34467509_34467622_34469151
transcript_26714.known	chr18	+	876	5	FSM	ENSMUSG00000014504.17	ENSMUST00000072576.10	876	5	0	0	0	0	multi-exon	FALSE	canonical	3	833	junction_3	511.998291012773	875	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAGTAGCTTTCACTTAG	NA	False	NA	4	True	AATAAA	-14	NA	34464197	34469652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_34464313_34464802_34464879_34467345_34467418_34467509_34467622_34469151
transcript_26717.known	chr18	+	613	4	FSM	ENSMUSG00000014504.17	ENSMUST00000119329.8	613	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	851.206594585983	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTGTGTGGAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	34464210	34469474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_34464313_34464802_34464879_34467509_34467622_34469151
transcript_26719.known	chr18	-	2852	5	FSM	ENSMUSG00000005873.7	ENSMUST00000006027.7	2852	5	0	0	0	0	multi-exon	FALSE	canonical	3	477	junction_1	38.3495436739474	305	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTTAAAATGTTGTTTT	5561	False	NA	-7	True	AATAAA	-27	NA	34506422	34477937	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_34480222_34482687_34482857_34490144_34490284_34505457_34505552_34506256
transcript_26721.known	chr18	+	1746	6	FSM	ENSMUSG00000012282.3	ENSMUST00000012426.3	1746	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAGGTAAGCGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	34675365	34681326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_34675490_34675574_34675609_34675896_34676036_34677834_34677961_34678554_34678698_34680146
transcript_26722.known	chr18	-	843	6	FSM	ENSMUSG00000035984.15	ENSMUST00000079287.12	843	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.489897948556636	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGGTGTATGCTTGCCTG	8122	False	NA	NA	False	ATTAAA	-19	NA	34712168	34695688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_34695857_34700088_34700208_34702850_34702952_34704508_34704715_34711610_34711821_34712129
transcript_26723.known	chr18	-	3005	21	FSM	ENSMUSG00000003778.15	ENSMUST00000097626.10	3005	21	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_13	121.034540524596	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGTGTGTATATATAACA	NA	False	NA	-34	True	NA	NA	NA	34757654	34732911	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_34733295_34735255_34735301_34735724_34735830_34736759_34736938_34737650_34737720_34737883_34737977_34738526_34738742_34739472_34739520_34739727_34739822_34740091_34740545_34740827_34741109_34741470_34741681_34742857_34743003_34744184_34744322_34746089_34746155_34746268_34746350_34747500_34747624_34747800_34747851_34749717_34749788_34756507_34756605_34757590
transcript_26724.known	chr18	-	1702	2	FSM	ENSMUSG00000003778.15	ENSMUST00000127159.2	1702	2	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TTTTAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-14	NA	34757654	34754966	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_34756605_34757590
transcript_26726.known	chr18	+	3674	19	FSM	ENSMUSG00000003779.17	ENSMUST00000237407.2	3674	19	0	0	0	0	multi-exon	FALSE	canonical	3	938	junction_13	99.0044268869321	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATGTCCACGAAGTTCTC	5977	False	NA	NA	False	AGTAAA	-10	NA	34757787	34766330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_34758114_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
transcript_26730.known	chr18	-	2084	17	FSM	ENSMUSG00000024370.18	ENSMUST00000025228.12	2084	17	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	259.182247655969	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATACTACTGTTCTTTCTA	NA	False	NA	NA	False	AATAAA	-14	NA	34784788	34764003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_34764355_34767135_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
transcript_26732.known	chr18	-	4133	16	FSM	ENSMUSG00000024370.18	ENSMUST00000133181.2	4133	16	0	0	0	0	multi-exon	FALSE	canonical	3	906	junction_9	78.8679909722569	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAAAACGCCTTATT	NA	False	NA	NA	False	AATAAA	-41	NA	34784788	34764735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_34767218_34767445_34767566_34767640_34767720_34769338_34769401_34769755_34769832_34770111_34770232_34770372_34770527_34774148_34774231_34774347_34774446_34774525_34774704_34776851_34776985_34777077_34777184_34778118_34778162_34779954_34780093_34784442_34784516_34784599
transcript_26738.known	chr18	+	3146	19	FSM	ENSMUSG00000003779.17	ENSMUST00000167161.9	3146	19	0	0	0	0	multi-exon	TRUE	canonical	3	115	junction_1	232.664995218447	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGGGACAGAAAATTGATA	5855	False	NA	53	True	TATAAA	-2	NA	34757665	34765888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_34757906_34758510_34758695_34759768_34759859_34759947_34760068_34760605_34760745_34760837_34761026_34761105_34761236_34761437_34761633_34761727_34761840_34761937_34762007_34762193_34762338_34762477_34762644_34763054_34763220_34763339_34763480_34763574_34763678_34764198_34764395_34764573_34764666_34764978_34765117_34765353
transcript_26739.known	chr18	-	1997	8	FSM	ENSMUSG00000024366.9	ENSMUST00000025224.9	1997	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.903507902905251	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTTTCCTAATTTTCTTA	9350	False	NA	NA	False	ATTAAA	-20	NA	34853440	34822950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_34823677_34823868_34823958_34824317_34824453_34824601_34824706_34828616_34828930_34837533_34837627_34844168_34844457_34853191
transcript_26740.known	chr18	-	1945	15	FSM	ENSMUSG00000044201.11	ENSMUST00000060710.9	1945	15	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_14	20.2922524674833	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTAGATGTCTCTAAGCC	2792	False	NA	-15	True	AATAAA	-22	NA	34884586	34866045	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_34866447_34866629_34866742_34867771_34867906_34868423_34868523_34871268_34871332_34873380_34873483_34876990_34877117_34877923_34878023_34880276_34880367_34880662_34880697_34881967_34882014_34882569_34882665_34883790_34884017_34884166_34884265_34884366
transcript_26749.known	chr18	+	4200	4	FSM	ENSMUSG00000034300.18	ENSMUST00000235929.2	4200	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	16.8588914885357	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTGTACGATAGTGTCT	5104	False	NA	26	True	AATAAA	-33	NA	34892625	34906813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_34892651_34895547_34895778_34901223_34902006_34903650
transcript_26750.known	chr18	+	1926	8	FSM	ENSMUSG00000038555.8	ENSMUST00000043484.8	1926	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	2.56347977784662	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGATCTCTGCGTTGTT	NA	False	NA	16	True	AATAAA	-22	NA	34973641	34980516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_34973841_34975506_34975580_34975909_34975987_34978304_34978426_34978627_34978742_34978997_34979146_34979241_34979373_34979453
transcript_26752.known	chr18	-	3709	11	FSM	ENSMUSG00000024360.9	ENSMUST00000025218.8	3709	11	0	0	0	0	multi-exon	FALSE	canonical	3	901	junction_10	88.1591742248077	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTGTGTGCTTGAGATT	NA	False	NA	NA	False	ATTAAA	-16	NA	35065060	35035837	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_35038124_35039034_35039183_35040667_35040733_35041094_35041251_35042195_35042326_35042797_35042989_35043168_35043308_35046606_35046747_35047052_35047229_35064621_35064726_35064886
transcript_26757.known	chr18	-	3049	17	FSM	ENSMUSG00000024359.11	ENSMUST00000025217.11	3049	17	0	0	0	0	multi-exon	TRUE	canonical	3	5978	junction_5	267.479905787332	1422	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGTCGTTGTAATCTTCT	199	False	NA	-19	True	CATAAA	-5	NA	35087410	35070466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_35071447_35071636_35071778_35071985_35072079_35072395_35072491_35073249_35073368_35073892_35073998_35074917_35075146_35076128_35076339_35078996_35079090_35079548_35079712_35080963_35081071_35081158_35081233_35082069_35082195_35084276_35084459_35085448_35085537_35085729_35085789_35087222
transcript_26770.known	chr18	+	3733	18	FSM	ENSMUSG00000037815.8	ENSMUST00000042345.8	3733	18	0	0	0	0	multi-exon	FALSE	canonical	3	1584	junction_14	159.493141807844	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGCAGAAGTCGTTCTT	NA	False	NA	33	True	AATAAA	-21	NA	35251911	35387832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402_35315607_35355117_35355199_35356475_35356629_35368660_35368754_35372435_35372593_35377007_35377209_35377749_35377902_35382754_35382866_35383898_35384081_35384218_35384325_35385668_35385804_35386657
transcript_26772.known	chr18	+	1656	7	FSM	ENSMUSG00000037815.8	ENSMUST00000236969.2	1656	7	0	0	0	0	multi-exon	FALSE	canonical	3	1595	junction_4	198.935221170667	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACCAGTATTATAAAATTT	NA	False	NA	NA	False	AAAAAG	-21	NA	35251939	35316103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35252035_35285653_35285761_35287397_35287594_35307305_35307473_35308149_35308270_35312737_35313008_35315402
transcript_26777.known	chr18	-	1703	10	FSM	ENSMUSG00000024357.11	ENSMUST00000025215.10	1703	10	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_3	10.8423039781937	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTGTCTCTTGTGTCTG	NA	False	NA	-2	True	ATTAAA	-18	NA	35631982	35399448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481814_35551109_35551249_35571319_35571434_35631843
transcript_26782.nnic	chr18	-	1213	7	NNC	ENSMUSG00000024357.11	novel	1532	8	NA	NA	1320	0	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_6	51.8215420671966	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTGTCTCTTGTGTCTG	NA	False	NA	-2	True	ATTAAA	-18	NA	35474800	35399448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35474777
transcript_26787.known	chr18	-	538	4	FSM	ENSMUSG00000024357.11	ENSMUST00000236007.2	538	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	61.0482504981829	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAGGAAGTAATTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	35631915	35563096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_35563361_35565516_35565605_35571319_35571434_35631843
transcript_26788.known	chr18	-	1524	9	FSM	ENSMUSG00000024357.11	ENSMUST00000235619.2	1524	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	48.2841524208513	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTCTGTCTCTTGTGTCTG	NA	False	NA	-2	True	ATTAAA	-18	NA	35631947	35399448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_35399963_35402091_35402257_35402666_35402764_35450894_35451017_35458336_35458529_35474150_35474251_35481692_35481809_35571319_35571434_35631843
transcript_26792.nic	chr18	+	2852	17	NIC	ENSMUSG00000117694.2	novel	1515	15	NA	NA	-24	3711	combination_of_known_splicesites	FALSE	canonical	3	44	junction_4	434.874982035067	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTTAGGTCATGTTGAT	NA	False	NA	32	True	AATAAA	-8	NA	35686432	35724472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389_35690423_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
transcript_26798.known	chr18	+	6262	15	FSM	ENSMUSG00000037236.17	ENSMUST00000166793.10	6262	15	0	0	0	0	multi-exon	FALSE	canonical	3	826	junction_2	183.6430655108	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGATTT	NA	False	NA	NA	False	AAGAAA	-5	NA	35695210	35726888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35695346_35704895_35705989_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
transcript_268.known	chr1	+	2022	13	FSM	ENSMUSG00000025911.15	ENSMUST00000027044.15	2022	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	21.4416197045735	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTAAAGAAAAAAATGTG	NA	False	NA	NA	False	ATTAAA	-41	NA	9618279	9647126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_9618377_9620131_9620170_9623147_9623202_9623542_9623698_9623847_9624045_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
transcript_26801.known	chr18	+	1846	14	FSM	ENSMUSG00000037236.17	ENSMUST00000236507.2	1846	14	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	325.222090707295	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTTAATGAAAATGTTT	NA	False	NA	NA	False	AATAGA	-44	NA	35695263	35723651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35695313_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
transcript_26804.known	chr18	+	1854	14	FSM	ENSMUSG00000037236.17	ENSMUST00000237061.2	1854	14	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_1	296.625019792437	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGTACACATACGGTTA	NA	False	NA	NA	False	AATAGA	-27	NA	35695271	35723634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35695346_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
transcript_2681.known	chr1	+	793	11	FSM	ENSMUSG00000053332.14	ENSMUST00000161461.8	793	11	0	0	0	0	multi-exon	FALSE	canonical	3	1206	junction_6	1709.07735342787	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862747	160866109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864693_160864735_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_26811.known	chr18	+	1951	14	FSM	ENSMUSG00000037236.17	ENSMUST00000237365.2	1951	14	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	322.705042381891	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTTGTTTTAGTGGAAAAT	NA	False	NA	NA	False	AATACA	-29	NA	35695351	35723582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35695575_35710610_35710673_35711468_35711511_35711957_35712071_35712318_35712372_35714222_35714349_35714649_35714776_35714971_35715140_35715768_35715901_35716930_35716975_35717567_35717935_35720683_35720907_35721384_35721507_35723432
transcript_26821.known	chr18	+	1190	4	FSM	ENSMUSG00000117869.2	ENSMUST00000235679.2	1190	4	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	16.2685791225499	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCACTGTGTAGTTGGTC	NA	False	NA	NA	False	NA	NA	NA	35686423	35691369	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35686523_35687479_35687515_35689668_35689745_35690389
transcript_26826.known	chr18	+	1586	2	FSM	ENSMUSG00000117869.2	ENSMUST00000235277.2	1586	2	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATACTTATTTTCTGTGA	NA	False	NA	NA	False	NA	NA	NA	35686474	35689017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35686523_35687479
transcript_26828.known	chr18	+	1355	1	FSM	ENSMUSG00000117869.2	ENSMUST00000235956.2	1355	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGTCAAGATTT	NA	False	NA	NA	False	AATAAA	-5	NA	35686462	35687817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35686500_35687800
transcript_26829.known	chr18	+	1676	3	FSM	ENSMUSG00000117869.2	ENSMUST00000235750.2	1676	3	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	0.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACATTGGAATTTCATTG	NA	False	NA	NA	False	NA	NA	NA	35686460	35690935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35687515_35689668_35689745_35690389
transcript_26831.known	chr18	+	857	5	FSM	ENSMUSG00000037058.17	ENSMUST00000236020.2	857	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	1458.22751997073	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCAAATTAAATCACCTCC	4664	False	NA	-19	True	NA	NA	NA	35731693	35749572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35731813_35733097_35733171_35743923_35744088_35746375_35746556_35749251
transcript_26834.known	chr18	+	1522	5	FSM	ENSMUSG00000037058.17	ENSMUST00000235400.2	1522	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	1449.29120607282	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTGGTGCTTGTGTTAT	4672	False	NA	19	True	AATAAA	-13	NA	35731701	35750236	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35731813_35741790_35741873_35743923_35744088_35746375_35746556_35749251
transcript_26837.known	chr18	+	713	5	FSM	ENSMUSG00000037058.17	ENSMUST00000236666.2	713	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	1472.19071454754	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTACACTTACGCATTG	4647	False	NA	-60	True	NA	NA	NA	35731676	35749403	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35731813_35742645_35742727_35743923_35744088_35746375_35746556_35749251
transcript_26844.known	chr18	+	1475	4	FSM	ENSMUSG00000037058.17	ENSMUST00000041314.17	1475	4	0	0	0	0	multi-exon	FALSE	canonical	3	2803	junction_2	114.719948860983	1430	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTGCTTGTGTTATTGG	4640	False	NA	22	True	AATAAA	-16	NA	35731669	35750239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35731813_35743923_35744088_35746375_35746556_35749251
transcript_26847.known	chr18	+	683	4	FSM	ENSMUSG00000037058.17	ENSMUST00000236868.2	683	4	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	1322.78519294202	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATGCTTAATAAAAGTGC	4719	False	NA	-21	True	NA	NA	NA	35731748	35749442	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35731897_35743923_35744088_35746375_35746556_35749251
transcript_26856.known	chr18	-	702	6	FSM	ENSMUSG00000024352.13	ENSMUST00000025209.12	702	6	0	0	0	0	multi-exon	TRUE	canonical	3	154	junction_2	20.7980768341691	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAATGCCCAACCTCTC	NA	False	NA	-7	True	AATAAA	-26	NA	35795239	35789741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_35789898_35790001_35790105_35793335_35793407_35793496_35793628_35793844_35793911_35795064
transcript_26857.nic	chr18	-	633	5	NIC	ENSMUSG00000024352.13	novel	702	6	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	65.5820097282784	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGCTGTAATGCCCAACC	NA	False	NA	-11	True	AATAAA	-22	NA	35795240	35789745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_-_35789898_35790001_35790105_35793335_35793407_35793496_35793628_35795064
transcript_26859.known	chr18	-	904	4	FSM	ENSMUSG00000024353.6	ENSMUST00000025211.6	904	4	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_1	0.471404520791032	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTAGTGTTGGCTGTTGAA	NA	False	NA	-1	True	AATAAA	-16	NA	35782420	35780319	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_35780780_35780876_35780988_35781311_35781437_35782212
transcript_26860.known	chr18	-	596	4	FSM	ENSMUSG00000024352.13	ENSMUST00000236574.2	596	4	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	92.3808541972969	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTCCCATTTTTCTTGAA	NA	False	NA	-42	True	NA	NA	NA	35795175	35793109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_35793398_35793496_35793628_35793844_35793911_35795064
transcript_26861.known	chr18	-	549	3	FSM	ENSMUSG00000024352.13	ENSMUST00000236971.2	549	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	85	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTCCCATTTTTCTTGAAA	NA	False	NA	-41	True	NA	NA	NA	35795184	35793108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_35793407_35793496_35793628_35795064
transcript_26863.nic	chr18	-	1332	9	NIC	ENSMUSG00000024350.7	novel	5146	8	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_7	22.8250821466211	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCACTTTACTCTCTGCTG	NA	False	NA	-10	True	AATACA	-14	NA	35836194	35808083	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_-_35808297_35813818_35813992_35814972_35815083_35816270_35816378_35819720_35819907_35830030_35830177_35833856_35834044_35835464_35835559_35836078
transcript_26864.known	chr18	-	1055	9	FSM	ENSMUSG00000073599.11	ENSMUST00000133064.8	1055	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	1.78535710713571	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAATTTCTTTTAAGGTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	35855409	35846138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_35846488_35846693_35846791_35848231_35848269_35848475_35848575_35849005_35849129_35849805_35849866_35850205_35850344_35851400_35851440_35855296
transcript_26865.known	chr18	-	5146	8	FSM	ENSMUSG00000024350.7	ENSMUST00000025208.7	5146	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	8.80630571852711	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGACTTTATGACTCCTCT	NA	False	NA	-4	True	ATTAAA	-18	NA	35836174	35804155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_35808297_35813818_35813992_35814972_35815083_35816270_35816378_35819720_35819907_35830030_35830177_35833856_35834044_35836078
transcript_26869.known	chr18	+	2504	2	FSM	ENSMUSG00000073598.4	ENSMUST00000097617.3	2504	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTGTTTGTTTATTAT	1342	False	NA	NA	False	NA	NA	NA	35860041	35863922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35860150_35861526
transcript_26871.known	chr18	-	2299	8	FSM	ENSMUSG00000024349.11	ENSMUST00000115728.5	2299	8	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_4	3.35638289270592	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTGGCCTAGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	35873607	35866733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_35867752_35868155_35868343_35868931_35869171_35871733_35871843_35872092_35872274_35872403_35872631_35872977_35873068_35873359
transcript_26873.known	chr18	+	2480	7	FSM	ENSMUSG00000091896.9	ENSMUST00000170693.9	2480	7	0	0	0	0	multi-exon	FALSE	canonical	3	837	junction_2	121.947734706308	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACCTGTCTCATCTCTCA	NA	False	NA	17	True	AATAAA	-28	NA	35904610	35940221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35905066_35926517_35926582_35932893_35932926_35933004_35933083_35933162_35933269_35934326_35934421_35938570
transcript_26877.known	chr18	+	884	6	FSM	ENSMUSG00000091896.9	ENSMUST00000235516.2	884	6	0	0	0	0	multi-exon	FALSE	canonical	3	837	junction_2	80.5729483139347	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGCAGTGCTGCGTGTTG	NA	False	NA	71	True	NA	NA	NA	35904814	35938749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_35905066_35926517_35926582_35932893_35932926_35933004_35933269_35934326_35934421_35938570
transcript_26880.nic	chr18	+	2167	3	NIC	ENSMUSG00000046668.10	novel	1169	2	NA	NA	-138	0	combination_of_known_junctions	FALSE	canonical	3	329	junction_2	30	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACACTCCTGGCTTCTTGC	NA	False	NA	34	True	AATAAA	-25	NA	35963228	35994741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_35963293_35991445_35992510_35993702
transcript_26882.nic	chr18	+	2277	3	NIC	ENSMUSG00000046668.10	novel	857	2	NA	NA	-88	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_1	135.5	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACACTCCTGGCTTCTTGC	NA	False	NA	34	True	AATAAA	-25	NA	35963278	35994741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_35963453_35991445_35992510_35993702
transcript_26883.known	chr18	+	1505	5	FSM	ENSMUSG00000046727.14	ENSMUST00000236374.2	1505	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	406.598927076794	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTACTATCCACTCACAAA	NA	False	NA	134	True	NA	NA	NA	36475989	36536150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_36476278_36477848_36478020_36478675_36478894_36499567_36499795_36535549
transcript_26887.known	chr18	+	1101	4	FSM	ENSMUSG00000046727.14	ENSMUST00000235864.2	1101	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	406.851597295896	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCTACTATCCACTCACAAA	NA	False	NA	134	True	NA	NA	NA	36481711	36536150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_36481870_36483746_36483862_36499567_36499795_36535549
transcript_26888.known	chr18	+	445	3	FSM	ENSMUSG00000046727.14	ENSMUST00000152804.9	445	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	356.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAGACCAATTCTTTTCT	NA	False	NA	NA	False	AATAAA	-13	NA	36481826	36526423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_36481870_36499567_36499795_36526248
transcript_26889.known	chr18	+	831	3	FSM	ENSMUSG00000046727.14	ENSMUST00000050584.10	831	3	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_1	90	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTGACTTACTCCAGGT	NA	False	NA	17	True	AATAAA	-17	NA	36481749	36536033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_36481870_36499567_36499795_36535549
transcript_26897.known	chr18	-	1109	4	FSM	ENSMUSG00000024346.7	ENSMUST00000025204.7	1109	4	0	0	0	0	multi-exon	FALSE	canonical	3	3024	junction_2	66.9792671072342	679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGTTGCCTTGCATTT	NA	False	NA	NA	False	NA	NA	NA	36587577	36536728	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_36537514_36565358_36565444_36584132_36584300_36587505
transcript_26901.known	chr18	-	1024	3	FSM	ENSMUSG00000024346.7	ENSMUST00000237792.2	1024	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	1494	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGTTGCCTTGCATTT	NA	False	NA	NA	False	NA	NA	NA	36587577	36536728	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_36537514_36584132_36584300_36587505
transcript_26903.known	chr18	-	2375	6	FSM	ENSMUSG00000024486.7	ENSMUST00000025363.7	2375	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	10.9068785635488	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTTTCATTTTTGGTT	NA	False	NA	-10	True	AATAAA	-22	NA	36648858	36637979	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_36639418_36639687_36639779_36640501_36640658_36645609_36645788_36648139_36648314_36648520
transcript_26905.nnic	chr18	-	1735	4	NNC	ENSMUSG00000024486.7	novel	2375	6	NA	NA	7230	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	26.0810701893581	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTTTCATTTTTGGTT	NA	False	NA	-10	True	AATAAA	-22	NA	36641190	36637979	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_36639418_36639687_36639779_36640501_36640658_36641140
transcript_26909.known	chr18	-	695	5	FSM	ENSMUSG00000006050.13	ENSMUST00000006209.5	695	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_2	590.993443280042	675	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGACTTCCTATGCCTT	NA	False	NA	NA	False	NA	NA	NA	36803338	36800481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_36800713_36800843_36800947_36801704_36801902_36803056_36803183_36803300
transcript_2691.known	chr1	+	904	10	FSM	ENSMUSG00000053332.14	ENSMUST00000162289.8	904	10	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_7	1101.2203780296	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAACTGTGAAGTGTGCA	NA	False	NA	16	True	ATTAAA	-12	NA	160862732	160866103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160864857_160864886_160865074_160865608_160865794_160865843_160866026
transcript_26910.known	chr18	-	760	4	FSM	ENSMUSG00000006050.13	ENSMUST00000236330.2	760	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	696.127542592272	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCATTCTGATGTCAGA	NA	False	NA	-12	True	NA	NA	NA	36803343	36800301	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803300
transcript_26913.known	chr18	-	871	5	FSM	ENSMUSG00000006050.13	ENSMUST00000173482.8	871	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	659.109626693466	687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCTGATGTCAGACTG	NA	False	NA	-9	True	NA	NA	NA	36803339	36800298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_36800713_36800843_36800953_36801704_36801902_36803056_36803183_36803314
transcript_26914.known	chr18	-	2067	13	FSM	ENSMUSG00000117679.2	ENSMUST00000001415.9	2067	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	18.7888486431003	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAGTGATGAGTATATTGAC	NA	False	NA	-2	True	AATAAA	-19	NA	36812419	36804206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809669_36809676_36809917_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
transcript_26915.known	chr18	-	2258	12	FSM	ENSMUSG00000117679.2	ENSMUST00000236001.2	2258	12	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_10	13.4925752462923	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAGTGATGAGTATATTGA	NA	False	NA	-3	True	AATAAA	-18	NA	36812369	36804207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_36804729_36808002_36808195_36808333_36808450_36808715_36808800_36809223_36809309_36809415_36809531_36809669_36810046_36810162_36810310_36810497_36810559_36811446_36811524_36811602_36811767_36812049
transcript_26921.known	chr18	+	2362	4	FSM	ENSMUSG00000033272.13	ENSMUST00000050476.11	2362	4	0	0	0	0	multi-exon	TRUE	canonical	3	118	junction_3	140.362229804017	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCATGTACAGTTGTCCTG	NA	False	NA	11	True	AATAAA	-29	NA	36812631	36816906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_36812677_36813568_36813668_36814580_36814819_36814926
transcript_26923.known	chr18	+	312	3	FSM	ENSMUSG00000033272.13	ENSMUST00000185899.2	312	3	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_1	96	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCTTTGGGGAAAGCAGGA	NA	False	NA	NA	False	NA	NA	NA	36812661	36814778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_36812677_36813568_36813668_36814580
transcript_26924.known	chr18	+	403	3	FSM	ENSMUSG00000033272.13	ENSMUST00000170288.2	403	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	222	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTACGGAAGGGGCCTGAC	NA	False	NA	NA	False	NA	NA	NA	36812635	36814755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_36812677_36813480_36813668_36814580
transcript_26926.known	chr18	+	1823	12	FSM	ENSMUSG00000006850.9	ENSMUST00000007046.9	1823	12	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	9.25845604107201	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTTGCCTCAGTGTTGC	NA	False	NA	53	True	AATAAA	-20	NA	36868120	36875450	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_36868310_36868440_36868554_36870509_36870626_36870721_36870906_36871148_36871254_36871414_36871501_36871680_36871798_36872005_36872118_36872207_36872395_36874104_36874200_36874714_36874883_36875099
transcript_2693.known	chr1	+	665	10	FSM	ENSMUSG00000053332.14	ENSMUST00000159119.8	665	10	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_6	1774.02353596925	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTGTGAAGTGTGCATT	NA	False	NA	18	True	ATTAAA	-14	NA	160862498	160866105	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_26931.known	chr18	+	1736	9	FSM	ENSMUSG00000006850.9	ENSMUST00000237727.2	1736	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	17.9164728671689	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGCATCTTCCAGATGAA	NA	False	NA	NA	False	AATAAA	-21	NA	36868091	36872885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_36868310_36868440_36868554_36870509_36870633_36870721_36870906_36871148_36871254_36871414_36871501_36871680_36871798_36872005_36872118_36872207
transcript_26934.known	chr18	-	572	3	FSM	ENSMUSG00000014294.5	ENSMUST00000014438.5	572	3	0	0	0	0	multi-exon	FALSE	canonical	3	2929	junction_2	68.5	2004	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGATGTCGTACGTCAT	NA	False	NA	NA	False	NA	NA	NA	36877610	36875384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_36875712_36877233_36877341_36877472
transcript_26935.known	chr18	+	613	4	FSM	ENSMUSG00000006850.9	ENSMUST00000237255.2	613	4	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	3.09120616516523	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAACAAAACCATGCACACC	NA	False	NA	NA	False	NA	NA	NA	36868212	36871008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_36868310_36868440_36868554_36870509_36870626_36870721
transcript_2694.nic	chr1	+	899	10	NIC	ENSMUSG00000053332.14	novel	502	12	NA	NA	-1	0	intron_retention	FALSE	canonical	3	3085	junction_6	967.274955483792	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862731	160866109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_26940.known	chr18	+	1955	20	FSM	ENSMUSG00000024474.8	ENSMUST00000224284.3	1955	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_14	168.043095646503	970	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	6	True	ATTAAA	-16	NA	36877744	36890688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36881772_36881923_36882039_36882266_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888478_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
transcript_26946.known	chr18	+	2349	18	FSM	ENSMUSG00000024474.8	ENSMUST00000235165.2	2349	18	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_12	177.004818811107	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTTTCTGTGTTGGGCA	NA	False	NA	6	True	ATTAAA	-16	NA	36877730	36890688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_36877842_36878663_36878731_36880400_36880494_36881216_36881277_36881603_36882338_36882443_36882491_36884156_36884321_36885409_36885519_36886314_36886355_36886479_36886706_36886944_36886964_36887605_36887685_36888478_36888559_36888749_36888808_36889600_36889690_36889874_36889984_36890336_36890372_36890459
transcript_26962.known	chr18	+	1619	7	FSM	ENSMUSG00000042660.9	ENSMUST00000049323.9	1619	7	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_5	28.487814158962	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGGTGCCAAGCTGGGA	NA	False	NA	4	True	AATAAA	-19	NA	36893272	36896863	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_36893534_36895029_36895131_36895218_36895307_36895407_36895588_36895710_36895811_36895901_36896072_36896144
transcript_2697.nnic	chr1	+	440	10	NIC	ENSMUSG00000053332.14	novel	557	11	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	388	junction_4	1715.49943776955	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862724	160866109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_26973.known	chr18	-	1451	4	FSM	ENSMUSG00000044595.11	ENSMUST00000061522.8	1451	4	0	0	0	0	multi-exon	TRUE	canonical	3	43	junction_2	7.76029781788188	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTGTCTGCTTGGTAT	NA	False	NA	-8	True	ATTAAA	-14	NA	36899251	36896725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_36897541_36898148_36898611_36898945_36899064_36899195
transcript_26975.known	chr18	+	3336	13	FSM	ENSMUSG00000019143.16	ENSMUST00000152954.8	3336	13	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_10	16.7752711519731	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGACCCTTTGCCTGAC	NA	False	NA	NA	False	NA	NA	NA	36916060	36925615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36922419_36922663_36923186_36923304_36923521_36923669_36924122
transcript_26976.known	chr18	-	1989	13	FSM	ENSMUSG00000001380.8	ENSMUST00000001416.8	1989	13	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_8	68.8118913334671	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCTGTGTCCTTGATGC	NA	False	NA	-2	True	AATAAA	-16	NA	36916258	36899580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_36900007_36900242_36900390_36901139_36901257_36903134_36903378_36903469_36903598_36903857_36903952_36904148_36904248_36904380_36904489_36905310_36905437_36906572_36906669_36909229_36909350_36915732_36915823_36916063
transcript_26981.known	chr18	+	2002	12	FSM	ENSMUSG00000019143.16	ENSMUST00000019287.9	2002	12	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_9	36.3770429831556	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGGTCTTTTGAGGTTT	NA	False	NA	NA	False	GGGGCT	-45	NA	36916283	36924747	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_36916548_36918617_36918696_36918921_36919042_36919163_36919260_36920554_36920681_36920951_36921060_36921218_36921318_36921629_36921724_36922209_36922338_36923186_36923304_36923521_36923669_36924122
transcript_2699.known	chr1	+	759	10	FSM	ENSMUSG00000053332.14	ENSMUST00000160429.8	759	10	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_6	1099.1542202985	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAACTGTGAAGTGTGCAT	NA	False	NA	17	True	ATTAAA	-13	NA	160862735	160866104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160864150_160864389_160864423_160864857_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_26991.known	chr18	-	703	4	FSM	ENSMUSG00000001380.8	ENSMUST00000236395.2	703	4	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_1	64.6030615029625	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	36916173	36906285	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_36906669_36909229_36909350_36915732_36915823_36916063
transcript_26993.known	chr18	+	2310	6	FSM	ENSMUSG00000001383.10	ENSMUST00000001419.10	2310	6	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_5	81.4331627778266	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTGACTTTTCTTTGAT	6616	False	NA	22	True	AATAAA	-22	NA	36926928	36932719	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_36927013_36927349_36927444_36928093_36928218_36929089_36929164_36929551_36929698_36930931
transcript_26999.known	chr18	+	482	2	FSM	ENSMUSG00000104225.2	ENSMUST00000191880.2	482	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCTAGATATTTTGCTTAA	332	False	NA	NA	False	AATAAA	-14	NA	37751958	37752819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_37752061_37752439
transcript_27.known	ERCC-00077	+	258	1	FSM	ERCC-00077A	DQ516742	258	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	AATAAA	-33	NA	0	258	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00077_+_0_300
transcript_27000.known	chr18	-	3302	2	FSM	ENSMUSG00000051316.9	ENSMUST00000066272.6	3302	2	0	0	0	0	multi-exon	FALSE	canonical	3	1260	junction_1	0	300	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTGTGAATCTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	37777257	37773543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_37776586_37776997
transcript_27001.known	chr18	+	5080	4	FSM	ENSMUSG00000102428.2	ENSMUST00000044851.8	5080	4	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	53.597263611743	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGACCGCGTCTGTTTAA	7721	False	NA	17	True	AATAAA	-20	NA	37898632	37974926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_37901594_37958073_37958133_37966317_37966407_37972955
transcript_27003.nic	chr18	-	1539	11	ISM	ENSMUSG00000024456.17	ENSMUST00000025337.14	5596	28	-55	52234	-13	320	5prime_fragment	FALSE	canonical	3	45	junction_4	3.38378486313773	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATATATATATATATATG	NA	False	NA	NA	False	NA	NA	NA	38068489	38028889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr18_-_38029267_38029413_38029525_38030546_38030656_38033697_38033838_38035137_38035202_38036116_38036204_38036379_38036511_38036808_38036911_38038056_38038213_38039440_38039468_38068254
transcript_27004.known	chr18	-	2032	15	FSM	ENSMUSG00000024454.17	ENSMUST00000043498.9	2032	15	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_2	40.0044002681746	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTTATTAGTTAGGCCATG	NA	False	NA	-5	True	AATAAA	-21	NA	38088069	38070024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_38070737_38074005_38074164_38074431_38074512_38074760_38074820_38074930_38075021_38076508_38076574_38076730_38076805_38077181_38077263_38077944_38078079_38078392_38078449_38078563_38078621_38078746_38078829_38085523_38085667_38087734_38087818_38087911
transcript_27012.known	chr18	-	4270	20	FSM	ENSMUSG00000038524.14	ENSMUST00000043437.14	4270	20	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_13	2.48875587737619	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGGTCATGTGTTCGTC	NA	False	NA	-2	True	AATAAA	-16	NA	38102827	38090486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_38092708_38092830_38092887_38094299_38094388_38095625_38095847_38095972_38096091_38096180_38096265_38096345_38096475_38097060_38097223_38097366_38097472_38097843_38097964_38098703_38098800_38098951_38099075_38099493_38099623_38100415_38100480_38100590_38100728_38100812_38100949_38101266_38101335_38101802_38101849_38102407_38102506_38102758
transcript_27014.known	chr18	+	2394	13	FSM	ENSMUSG00000024442.7	ENSMUST00000025314.7	2394	13	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_6	27.9179104200551	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTCTTGCCCTTGAGTGTG	3967	False	NA	20	True	AATAAA	-21	NA	38383311	38395682	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522_38387620_38390310_38390454_38391080_38391240_38391322_38391416_38392949_38393110_38394116_38394339_38394932
transcript_27019.known	chr18	+	1837	7	FSM	ENSMUSG00000024442.7	ENSMUST00000236078.2	1837	7	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_6	32.9515637801236	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTTTGAAGATATTGAATA	3983	False	NA	NA	False	NA	NA	NA	38383327	38388605	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_38383453_38384138_38384254_38384335_38384454_38385873_38386019_38386960_38387123_38387332_38387422_38387522
transcript_27022.known	chr18	-	886	4	FSM	ENSMUSG00000097080.9	ENSMUST00000235608.2	886	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.4142135623731	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCGTGTTCCCATCTGCTG	NA	False	NA	NA	False	CATAAA	-30	NA	38383226	38372110	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_38372243_38372625_38372805_38373891_38374007_38382766
transcript_27025.nic	chr18	+	2995	10	NIC	ENSMUSG00000060450.15	novel	2410	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	92.9832057051696	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAAGTAGACACGGTGT	975	False	NA	16	True	AATAAA	-21	NA	38429736	38450895	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_38429852_38430552_38430629_38431361_38431449_38432806_38432980_38433481_38433644_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
transcript_27029.nnic	chr18	+	2974	9	NNC	ENSMUSG00000060450.15	novel	3040	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	38	junction_2	77.7551244291976	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAAGTAGACACGGTGT	972	False	NA	16	True	AATAAA	-21	NA	38429733	38450895	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_38429852_38432806_38432950_38433464_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
transcript_27030.known	chr18	+	3040	9	FSM	ENSMUSG00000060450.15	ENSMUST00000072376.13	3040	9	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_3	53.7248487666555	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGACACGGTGTCCTGTTG	926	False	NA	23	True	AATAAA	-28	NA	38429687	38450902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_38429852_38432806_38432980_38433481_38433644_38434708_38434861_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
transcript_27033.known	chr18	+	2822	8	FSM	ENSMUSG00000060450.15	ENSMUST00000236649.2	2822	8	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_3	44.1310663864829	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAAGTAGACACGGTGT	985	False	NA	16	True	AATAAA	-21	NA	38429746	38450895	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_38429852_38432806_38432980_38433481_38433644_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
transcript_27034.nic	chr18	+	2671	7	NIC	ENSMUSG00000060450.15	novel	2822	8	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	95.4668354281562	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAAGTAGACACGGTGT	963	False	NA	16	True	AATAAA	-21	NA	38429724	38450895	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_38429852_38433481_38433644_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
transcript_27035.nnic	chr18	+	2529	6	NIC	ENSMUSG00000060450.15	novel	2822	8	NA	NA	17	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	90.4486594704421	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTGAAGTAGACACGGTGT	943	False	NA	16	True	AATAAA	-21	NA	38429704	38450895	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_38429852_38440917_38441449_38442537_38442767_38446264_38446438_38447725_38447857_38449577
transcript_27039.known	chr18	+	618	4	FSM	ENSMUSG00000060450.15	ENSMUST00000237416.2	618	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	98.2694707876708	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAAAGGATCAGAAATGAAA	991	False	NA	NA	False	GATAAA	-9	NA	38429752	38449867	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_38429852_38432806_38432980_38433481_38433538_38449577
transcript_27044.known	chr18	-	2289	7	FSM	ENSMUSG00000052102.16	ENSMUST00000063814.15	2289	7	0	0	0	0	multi-exon	FALSE	canonical	3	1055	junction_1	137.188434886716	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAATGTGTCTTTTGT	NA	False	NA	-30	True	ATTAAA	-13	NA	38472056	38460610	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_38462027_38463538_38463714_38465020_38465206_38466206_38466390_38468068_38468171_38471143_38471276_38471960
transcript_27045.known	chr18	-	1929	5	FSM	ENSMUSG00000052102.16	ENSMUST00000237487.2	1929	5	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	550.877028019866	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCATTCTCCTGAGTT	NA	False	NA	-7	True	AATAAA	-17	NA	38472033	38460587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_38462027_38466206_38466390_38468068_38468171_38471143_38471276_38471960
transcript_27046.known	chr18	-	2085	6	FSM	ENSMUSG00000052102.16	ENSMUST00000235590.2	2085	6	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	488.205448556241	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTTTGTGAATTTTG	NA	False	NA	-22	True	AATAAA	-2	NA	38472029	38460602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_38462027_38463538_38463714_38466206_38466390_38468068_38468171_38471143_38471276_38471960
transcript_27048.known	chr18	+	838	8	FSM	ENSMUSG00000024425.5	ENSMUST00000236480.2	838	8	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	228.987121997758	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGCTTTAAAAAATAAAGTAC	9144	False	NA	-22	True	NA	NA	NA	38552036	38597427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585425_38589107_38589175_38593597_38593704_38597329
transcript_27050.known	chr18	+	1392	8	FSM	ENSMUSG00000024425.5	ENSMUST00000025293.5	1392	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	234.910230357323	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGTTCTCAATTAGT	9129	False	NA	NA	False	NA	NA	NA	38552021	38597892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597313
transcript_27052.known	chr18	+	1796	8	FSM	ENSMUSG00000024425.5	ENSMUST00000236085.2	1796	8	0	0	0	0	multi-exon	FALSE	canonical	3	612	junction_4	51.8734724387826	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTAGTGTTTCATTTGGGG	9067	False	NA	44	True	AATAAA	-29	NA	38551959	38598250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_38552230_38575969_38576058_38580743_38580875_38584607_38584696_38585357_38585483_38589107_38589175_38593597_38593704_38597329
transcript_27054.nnic	chr18	+	871	5	NNC	ENSMUSG00000036452.19	novel	607	5	NA	NA	-5245	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	11.5758369027902	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGACTTTGAGCGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	39419242	39440426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_39419308_39419579_39419740_39429837_39429977_39439754_39439906_39440070
transcript_27057.known	chr18	-	3328	6	FSM	ENSMUSG00000024487.6	ENSMUST00000025364.6	3328	6	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_2	22.8962879087419	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTTGTGTCTTTCTTGCC	NA	False	NA	NA	False	NA	NA	NA	40352482	40336948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_40339454_40340739_40340922_40343800_40343947_40345095_40345269_40351798_40351919_40352280
transcript_27060.known	chr18	-	426	2	FSM	ENSMUSG00000024487.6	ENSMUST00000237176.2	426	2	0	0	0	0	multi-exon	FALSE	canonical	3	292	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTATGATTTATTTCCT	NA	False	NA	NA	False	NA	NA	NA	40352396	40351608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_40351919_40352280
transcript_27066.known	chr18	-	868	7	FSM	ENSMUSG00000056671.8	ENSMUST00000235606.2	868	7	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_2	31.5722275988812	444	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATGCTTTCTCCAAATGT	NA	False	NA	-14	True	AATAAA	-23	NA	42084307	42008664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_42008919_42014277_42014351_42045434_42045541_42065665_42065827_42068232_42068307_42070698_42070757_42084165
transcript_27076.known	chr18	-	3980	32	FSM	ENSMUSG00000024493.10	ENSMUST00000097590.5	3980	32	0	0	0	0	multi-exon	FALSE	canonical	1	536	junction_20	328.950941881023	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTTTTTAATCTTTATAC	NA	False	NA	41	True	AATAAA	-17	NA	42395259	42335362	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_42335784_42343084_42343218_42344227_42344324_42345572_42345678_42347824_42347936_42349916_42350028_42350532_42350674_42351568_42351710_42352922_42353014_42354543_42354728_42358818_42358883_42360300_42360359_42361070_42361284_42361722_42361862_42362693_42362777_42362855_42362922_42363006_42363093_42366864_42366943_42367645_42367787_42368549_42368604_42369647_42369725_42369803_42369892_42374967_42375194_42375768_42375837_42376031_42376096_42376841_42376955_42377813_42377976_42379004_42379143_42383893_42383975_42384357_42384446_42390134_42390260_42395025
transcript_27089.known	chr18	-	452	2	FSM	ENSMUSG00000024493.10	ENSMUST00000237520.2	452	2	0	0	0	0	multi-exon	FALSE	canonical	3	1504	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGTGTGCGTCATGACAT	NA	False	NA	NA	False	AATAAA	-33	NA	42395156	42389938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_42390260_42395025
transcript_27090.known	chr18	-	414	2	FSM	ENSMUSG00000117662.2	ENSMUST00000236263.2	414	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTAACTGAGTTTTTATT	NA	False	NA	NA	False	TTTAAA	-22	NA	42408262	42407446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_42407614_42408015
transcript_27091.nic	chr18	+	478	3	ISM	ENSMUSG00000024491.17	ENSMUST00000236240.2	6301	21	-31	49342	-12	-7143	5prime_fragment	FALSE	canonical	3	108	junction_1	4	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAATTAAAGAAGAGGT	NA	False	NA	NA	False	AAGAAA	-3	NA	42408405	42425154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr18_+_42408658_42421172_42421292_42425047
transcript_27092.known	chr18	+	4417	22	FSM	ENSMUSG00000024498.17	ENSMUST00000237602.2	4417	22	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_6	86.5887404766016	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTCTCCCTTTCTTTTGTG	NA	False	NA	NA	False	TATAAA	-25	NA	42644551	42708858	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_42644651_42652432_42652659_42655978_42656132_42656957_42657418_42663712_42663956_42668149_42668213_42669242_42669444_42669926_42670040_42671032_42671122_42681461_42681623_42682902_42682960_42683106_42683174_42685556_42685693_42686472_42686563_42693998_42694118_42697147_42697299_42700935_42701101_42701492_42701676_42704079_42704260_42704888_42704973_42706324_42706426_42707582
transcript_27093.known	chr18	-	2106	14	FSM	ENSMUSG00000024501.21	ENSMUST00000025379.14	2106	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.11223541811477	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAGCCAAAATGGTACAC	NA	False	NA	NA	False	AAGAAA	-10	NA	43526442	43457352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_43457486_43458789_43458953_43461389_43461570_43462755_43462927_43465936_43466079_43466945_43467103_43475306_43475428_43478170_43478240_43486945_43487027_43487807_43487870_43491298_43491464_43494026_43494212_43496567_43496657_43526054
transcript_27094.known	chr18	-	2379	1	FSM	ENSMUSG00000043424.11	ENSMUST00000057110.11	2379	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGGTACAGGCGTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	43610861	43608482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_43608500_43610900
transcript_27095.known	chr18	+	8616	11	FSM	ENSMUSG00000024472.10	ENSMUST00000025350.10	8616	11	0	0	0	0	multi-exon	FALSE	canonical	2	46	junction_10	33.3472637558166	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTGGTTTTTTTGTTCT	NA	False	NA	15	True	AATAAA	-20	NA	44513593	44558036	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_44513754_44528939_44529092_44532690_44532819_44533383_44533483_44538276_44538430_44538523_44538637_44538719_44538828_44543249_44543386_44545582_44545694_44548443_44548496_44550632
transcript_27099.known	chr18	+	398	2	FSM	ENSMUSG00000024472.10	ENSMUST00000202306.2	398	2	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	0	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCCCCTTTTTGTTTTTC	NA	False	NA	13	True	AATAAA	-14	NA	44513568	44529152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_44513754_44528939
transcript_271.nnic	chr1	+	1669	12	NIC	ENSMUSG00000025911.15	novel	2022	13	NA	NA	-7	-163	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	26.0923344558392	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCTGTTTCATAAAAGC	NA	False	NA	NA	False	AATAAA	-23	NA	9618272	9646963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_9618377_9620131_9620170_9623147_9623202_9623542_9623698_9625762_9625841_9627224_9627331_9628357_9628511_9630333_9630433_9633733_9633813_9634021_9634119_9637005_9637164_9646415
transcript_27100.known	chr18	+	7215	30	FSM	ENSMUSG00000034653.12	ENSMUST00000037763.11	7215	30	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	9.69634080312122	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATGAAGTTATTCAGATCT	NA	False	NA	30	True	AATAAA	-32	NA	44960812	45022784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_44961986_44963218_44963310_44966088_44966286_44967525_44967726_44970407_44970575_44973251_44973355_44974329_44974487_44977352_44977461_44978746_44978896_44980810_44980947_44983374_44983502_44983702_44983769_44987669_44987849_44988058_44988156_44988237_44988326_44988410_44988492_44990075_44990159_44991254_44991361_44992997_44993118_44993443_44993717_44995671_44995799_44997331_44997538_44997927_44998124_45004516_45004627_45005907_45006201_45010684_45010863_45018189_45018394_45019306_45019490_45020674_45020763_45020855
transcript_27102.known	chr18	-	7477	9	FSM	ENSMUSG00000024477.5	ENSMUST00000236216.2	7477	9	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_2	12.5642100826116	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTACATGAGAAAATCC	NA	False	NA	NA	False	AATAAA	-9	NA	46414060	46368417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_46374769_46379628_46379738_46381937_46382123_46387345_46387392_46391151_46391285_46392670_46392823_46395956_46396025_46407656_46407776_46413746
transcript_27106.known	chr18	-	1845	3	FSM	ENSMUSG00000024477.5	ENSMUST00000237757.2	1845	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	63.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAACCCAAGGAAA	NA	False	NA	NA	False	AAAAAG	-36	NA	46413894	46394450	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_46396025_46407652_46407776_46413746
transcript_27107.known	chr18	-	5726	3	FSM	ENSMUSG00000033319.6	ENSMUST00000036226.6	5726	3	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	21.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAGTGTGCTCTCATTAA	NA	False	NA	-3	True	AATAAA	-18	NA	46659038	46634812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_46639457_46657168_46657897_46658684
transcript_27109.known	chr18	+	726	5	FSM	ENSMUSG00000057561.11	ENSMUST00000235849.2	726	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	803.50855627056	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCTAAAATCTCTCCAGAAC	NA	False	NA	NA	False	AAAAAG	-10	NA	46730776	46749523	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_46730868_46731707_46731768_46740570_46740810_46748859_46748995_46749322
transcript_27116.known	chr18	+	1905	4	FSM	ENSMUSG00000057561.11	ENSMUST00000235455.2	1905	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	698.014804045492	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTCTTTTTAATATGTT	NA	False	NA	17	True	AATAAA	-18	NA	46730821	46742245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_46730868_46731707_46731768_46732343_46732468_46740570
transcript_27118.known	chr18	+	2012	4	FSM	ENSMUSG00000057561.11	ENSMUST00000238168.2	2012	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	796.694141785639	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGAGAGGCTTTTTTT	NA	False	NA	27	True	AATAAA	-21	NA	46730767	46742316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_46730868_46731117_46731224_46731707_46731768_46740570
transcript_27120.known	chr18	+	2865	3	FSM	ENSMUSG00000057561.11	ENSMUST00000078079.11	2865	3	0	0	0	0	multi-exon	FALSE	canonical	3	1498	junction_1	106	1155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAAATGTTTTTTTTTTCT	NA	False	NA	20	True	ATTAAA	-17	NA	46730770	46743278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_46730868_46731707_46731768_46740570
transcript_27122.known	chr18	+	2165	3	FSM	ENSMUSG00000057561.11	ENSMUST00000237478.2	2165	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	841.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGAGAGGCTTTTTTT	NA	False	NA	27	True	AATAAA	-21	NA	46730864	46742316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_46731224_46731707_46731768_46740570
transcript_27124.known	chr18	-	1595	5	FSM	ENSMUSG00000033022.9	ENSMUST00000035804.9	1595	5	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	18.3166590840142	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGATGCACATGTTTTT	2577	False	NA	8	True	AATAAA	-30	NA	46861462	46846259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_46847029_46848663_46848834_46853353_46853509_46856384_46856463_46861039
transcript_27125.known	chr18	-	857	5	FSM	ENSMUSG00000033022.9	ENSMUST00000234064.2	857	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	79.0296621528904	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAGCCCTTGGAAGTTTCGC	2632	False	NA	NA	False	NA	NA	NA	46861407	46846991	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_46847029_46848663_46848883_46853353_46853509_46856384_46856463_46861039
transcript_27132.known	chr18	-	4765	4	FSM	ENSMUSG00000032905.6	ENSMUST00000035648.6	4765	4	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	11.8977121983832	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTTGTAGCTCCTTTTT	NA	False	NA	NA	False	NA	NA	NA	46874646	46863210	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_46867577_46868321_46868385_46870461_46870599_46874447
transcript_27134.known	chr18	+	1520	6	FSM	ENSMUSG00000024480.10	ENSMUST00000025357.9	1520	6	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_4	49.1064150595419	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTTTGCCTCCCATTC	NA	False	NA	NA	False	TATAAA	-13	NA	46874942	46923893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_46875149_46887437_46887530_46891069_46891182_46912254_46912327_46913727_46913836_46922963
transcript_27137.known	chr18	+	2257	5	FSM	ENSMUSG00000073568.3	ENSMUST00000234910.2	2257	5	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_1	19.1441897190766	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCAGGGTTTCTTTTTTC	NA	False	NA	26	True	AATAAA	-22	NA	47054881	47067299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_47054960_47059048_47059157_47059378_47059483_47061585_47061726_47065472
transcript_27152.known	chr18	+	1610	7	FSM	ENSMUSG00000042705.10	ENSMUST00000049388.9	1610	7	0	0	0	0	multi-exon	FALSE	canonical	3	1216	junction_3	103.11913282973	703	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCGTACAATGTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	47091882	47221062	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47219318_47219379_47220094
transcript_27154.known	chr18	+	792	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234961.2	792	6	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_5	518.443593846042	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAACTTTATAAATATTT	NA	False	NA	-11	True	TTTAAA	-1	NA	47091927	47168874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47100806_47100963_47123545_47123657_47168619
transcript_27156.known	chr18	+	600	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234280.2	600	6	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	477.712298355401	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTAGACAAATAGCAGTGAT	NA	False	NA	NA	False	NA	NA	NA	47091941	47220267	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_47091996_47093482_47093574_47096726_47096838_47123545_47123657_47219318_47219379_47220094
transcript_27157.known	chr18	+	528	6	FSM	ENSMUSG00000042705.10	ENSMUST00000234701.2	528	6	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	502.986441169143	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCCATCACATTCCGGCCA	NA	False	NA	NA	False	NA	NA	NA	47091946	47220155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_47091996_47093482_47093574_47100806_47100963_47123545_47123657_47219318_47219379_47220094
transcript_27159.known	chr18	+	494	5	FSM	ENSMUSG00000042705.10	ENSMUST00000234085.2	494	5	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_2	523.690271057235	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAGCAGTGATGGGAGATC	NA	False	NA	NA	False	NA	NA	NA	47091944	47220275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_47091996_47093482_47093574_47123545_47123657_47219318_47219379_47220094
transcript_27160.known	chr18	+	515	1	FSM	ENSMUSG00000117621.2	ENSMUST00000234633.2	515	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5376	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAATAAAATGATGTAAATG	NA	False	NA	NA	False	NA	NA	NA	47245205	47245720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_47245200_47245700
transcript_27161.known	chr18	+	1747	1	FSM	ENSMUSG00000059040.6	ENSMUST00000235307.2	1747	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13431	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	AATAAA	-30	NA	48179713	48181460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_48179700_48181500
transcript_27162.known	chr18	+	1002	2	FSM	ENSMUSG00000062210.14	ENSMUST00000148989.3	1002	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGCAAGATGTGAGAAAAAC	NA	False	NA	NA	False	AAAAAG	-40	NA	50112493	50224068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_50112694_50223266
transcript_27163.known	chr18	+	2684	24	FSM	ENSMUSG00000024507.7	ENSMUST00000025385.7	2684	24	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_3	18.279183363144	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTGCTCCTCTTTGCAT	NA	False	NA	14	True	AATAAA	-23	NA	50261267	50329336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_50261477_50263192_50263247_50272514_50272623_50273406_50273467_50275536_50275559_50275659_50275707_50277807_50277893_50279456_50279645_50288193_50288286_50291451_50291477_50293201_50293331_50295168_50295270_50297681_50297919_50299950_50300003_50303786_50303859_50305094_50305199_50306730_50306797_50310238_50310309_50310973_50311081_50312113_50312201_50314998_50315086_50316225_50316365_50324778_50324907_50328921
transcript_27168.known	chr18	+	875	1	FSM	ENSMUSG00000085939.4	ENSMUST00000145417.2	875	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	238	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCACCAAAGCAAACGAAAAT	NA	False	NA	NA	False	ATTAAA	-34	NA	50267792	50268667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_50267800_50268700
transcript_27173.nnic	chr18	+	2651	9	NNC	ENSMUSG00000024528.9	novel	2656	8	NA	NA	-54	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_8	194.53691005822	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATGTGGCCTGCATATA	NA	False	NA	4	True	ATTAAA	-15	NA	52598710	52625005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515_52624796_52624856
transcript_27175.known	chr18	+	2656	8	FSM	ENSMUSG00000024528.9	ENSMUST00000025406.9	2656	8	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_5	82.8179710360657	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTATGTGGCCTGCATA	NA	False	NA	2	True	ATTAAA	-13	NA	52598764	52625003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704_52616777_52620583_52620666_52621322_52622044_52623089_52623128_52623515
transcript_27181.known	chr18	+	537	4	FSM	ENSMUSG00000024528.9	ENSMUST00000238100.2	537	4	0	0	0	0	multi-exon	FALSE	canonical	3	567	junction_3	20.1163283594862	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTAATGTTTTCCCTCT	NA	False	NA	NA	False	NA	NA	NA	52598793	52617015	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_52598858_52608667_52608757_52609371_52609445_52616704
transcript_27184.known	chr18	+	2067	15	FSM	ENSMUSG00000034484.9	ENSMUST00000037850.7	2067	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	254.699312515598	376	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTTAGGGATCTTTTTTT	NA	False	NA	38	True	AATAAA	-18	NA	53309387	53353937	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_53309560_53322726_53322845_53327501_53327666_53330926_53330994_53331257_53331302_53332828_53332971_53336112_53336192_53342659_53342736_53343401_53343516_53343770_53343865_53345824_53346031_53349452_53349597_53351173_53351255_53351360_53351433_53353443
transcript_27192.known	chr18	+	1977	7	FSM	ENSMUSG00000024535.17	ENSMUST00000165032.9	1977	7	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_3	2.70801280154532	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTATTTGAGTTTGTCTTT	NA	False	NA	NA	False	AATAAA	-14	NA	53378733	53523992	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_53378925_53460483_53460568_53473201_53473307_53516141_53516237_53517688_53517722_53518249_53518315_53522588
transcript_27199.known	chr18	-	1403	5	FSM	ENSMUSG00000024538.9	ENSMUST00000025419.9	1403	5	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_3	12.8354976529934	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTGCAAGACTTTG	NA	False	NA	-11	True	ATTAAA	-20	NA	53551187	53539403	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_53540138_53542196_53542382_53544058_53544153_53544577_53544692_53550911
transcript_27203.nic	chr18	-	1757	4	NIC	ENSMUSG00000024538.9	novel	1403	5	NA	NA	71	0	intron_retention	FALSE	canonical	3	375	junction_3	11.7756811551038	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTTTGCAAGACTTTG	NA	False	NA	-11	True	ATTAAA	-20	NA	53551116	53539403	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_-_53540138_53542196_53542382_53544058_53544692_53550911
transcript_27209.known	chr18	-	4554	21	FSM	ENSMUSG00000048799.9	ENSMUST00000049811.8	4554	21	0	0	0	0	multi-exon	FALSE	canonical	1	72	junction_13	46.6927189184781	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTGGTCGGTCTCTTT	NA	False	NA	-1	True	AATAAA	-24	NA	53877619	53814794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_53816537_53818954_53819101_53830666_53830766_53836193_53836317_53839891_53840054_53842128_53842222_53846453_53846544_53847835_53847989_53848071_53848169_53851518_53851702_53852287_53852438_53854694_53854873_53856154_53856378_53857425_53857654_53860618_53860817_53864162_53864312_53868714_53868857_53871549_53871665_53873123_53873281_53877353_53877420_53877559
transcript_27213.known	chr18	-	474	2	FSM	ENSMUSG00000048799.9	ENSMUST00000235928.2	474	2	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATTTGTAAGAACTTTGC	NA	False	NA	NA	False	NA	NA	NA	53877612	53876998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_53877420_53877559
transcript_27215.known	chr18	+	2605	14	FSM	ENSMUSG00000001700.11	ENSMUST00000070166.6	2605	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	2.64910390118809	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGTTTCCTGCATTT	2611	False	NA	NA	False	AATAAA	-26	NA	56565203	56636864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_56565430_56602604_56602725_56607090_56607203_56609674_56609742_56611920_56612025_56615692_56615789_56618283_56618356_56618447_56618529_56621822_56621935_56622686_56622810_56623742_56623831_56624966_56625072_56630391_56630486_56635659
transcript_27217.known	chr18	-	4131	20	FSM	ENSMUSG00000053644.14	ENSMUST00000174518.8	4131	20	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_19	109.003545140448	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTTTTTTCTCTGGTT	2854	False	NA	NA	False	ATTAAA	-14	NA	56706023	56657793	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104_56695277_56695554_56695748_56705916
transcript_27222.known	chr18	-	1914	18	FSM	ENSMUSG00000053644.14	ENSMUST00000066208.13	1914	18	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_7	37.2351547251364	551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATAGGTTTGGTGAGTTTTT	NA	False	NA	-5	True	ATTAAA	-30	NA	56695381	56659815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675296_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104
transcript_27223.known	chr18	-	1789	18	FSM	ENSMUSG00000053644.14	ENSMUST00000174704.8	1789	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	101.074812129723	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAAAGATAGGTTTGGTGA	NA	False	NA	-11	True	ATTAAA	-24	NA	56695290	56659821	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_56660080_56661348_56661425_56664561_56664636_56664782_56664881_56665052_56665170_56665559_56665667_56667261_56667347_56670275_56670371_56671772_56671815_56675324_56675395_56678036_56678115_56679975_56680021_56681518_56681652_56683367_56683492_56684231_56684313_56692293_56692360_56693847_56693902_56695104
transcript_27229.known	chr18	+	1386	5	FSM	ENSMUSG00000008301.12	ENSMUST00000130163.8	1386	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	188.72913791993	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTACCATTTCTACTGAG	NA	False	NA	15	True	AATAAA	-16	NA	56695514	56720261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_56695796_56708533_56709121_56713251_56713373_56717362_56717447_56719948
transcript_27231.known	chr18	+	1942	5	FSM	ENSMUSG00000008301.12	ENSMUST00000008445.7	1942	5	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_1	34.4818792991333	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGATGTGTCTGTCCTTTA	NA	False	NA	NA	False	NA	NA	NA	56705893	56720784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_56706208_56708533_56709121_56713251_56713373_56717362_56717447_56719948
transcript_27235.known	chr18	+	2843	11	FSM	ENSMUSG00000024590.9	ENSMUST00000025486.9	2843	11	0	0	0	0	multi-exon	FALSE	canonical	3	1085	junction_1	118.73230394463	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACTGTTCTTTTTAACCC	NA	False	NA	20	True	AATAAA	-19	NA	56840884	56886496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_56841547_56861472_56861630_56862358_56862485_56864041_56864213_56866283_56866410_56872892_56873114_56873758_56873985_56876282_56876388_56881048_56881169_56882770_56882882_56885678
transcript_27238.nnic	chr18	-	1224	6	NNC	ENSMUSG00000024592.16	novel	726	6	NA	NA	6	517	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	44.1017006474807	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACATGTGTTTTTGTAC	NA	False	NA	NA	False	TATAAA	-4	NA	57108434	57090168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_57090994_57091189_57091260_57091594_57091652_57095472_57095591_57106455_57106557_57108381
transcript_27239.nnic	chr18	-	1233	6	NNC	ENSMUSG00000024592.16	novel	2400	5	NA	NA	-27	517	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	42.9958137497129	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACATGTGTTTTTGTAC	NA	False	NA	NA	False	TATAAA	-4	NA	57108467	57090168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_57090994_57091189_57091260_57091594_57091652_57095472_57095591_57106455_57106557_57108405
transcript_27241.nic	chr18	-	1154	5	NIC	ENSMUSG00000024592.16	novel	726	6	NA	NA	6	517	combination_of_known_junctions	FALSE	canonical	3	31	junction_4	31.2329953734828	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAACATGTGTTTTTGTAC	NA	False	NA	NA	False	TATAAA	-4	NA	57108434	57090168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_-_57090994_57091594_57091652_57095472_57095591_57106455_57106557_57108381
transcript_27242.known	chr18	-	2400	5	FSM	ENSMUSG00000024592.16	ENSMUST00000025488.15	2400	5	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_4	15.0228991875736	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTTCTGTTGGTAGTT	NA	False	NA	NA	False	NA	NA	NA	57108440	57088904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_57090994_57091594_57091652_57095472_57095591_57106455_57106557_57108405
transcript_27246.known	chr18	+	5030	9	FSM	ENSMUSG00000024594.10	ENSMUST00000025490.10	5030	9	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_4	197.841121547064	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTGTGCAATGATTTAAATG	NA	False	NA	12	True	AATAAA	-22	NA	57487812	57526028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_57487964_57495504_57495622_57496147_57496538_57498260_57498422_57504438_57504542_57507598_57507763_57514699_57514804_57517245_57517349_57522291
transcript_27258.nic	chr18	+	1019	5	NIC	ENSMUSG00000024594.10	novel	523	5	NA	NA	-70	370	combination_of_known_junctions	FALSE	canonical	3	294	junction_1	276.069284781918	598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATAGATCCTCTTTTTAC	NA	False	NA	NA	False	AATAAA	-29	NA	57506893	57522677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_57507156_57507598_57507763_57514699_57514804_57517245_57517349_57522291
transcript_27260.known	chr18	+	523	5	FSM	ENSMUSG00000024594.10	ENSMUST00000238057.2	523	5	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	350.033123432626	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAGGACTACAATCTGAGG	NA	False	NA	NA	False	NA	NA	NA	57506963	57522307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_57507100_57507598_57507763_57514699_57514804_57517245_57517349_57522291
transcript_27263.known	chr18	+	3377	5	FSM	ENSMUSG00000024601.10	ENSMUST00000025503.10	3377	5	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_3	47.2175814713121	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGAAGGGTCCTGTGTATT	NA	False	NA	NA	False	AATAAA	-18	NA	58792537	58813440	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_58792870_58804279_58804400_58804519_58804724_58806321_58806439_58810836
transcript_27265.known	chr18	-	1990	2	FSM	ENSMUSG00000038059.8	ENSMUST00000042710.8	1990	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTTTTGTTTGTTTGTT	NA	False	NA	2	True	GATAAA	-15	NA	60635059	60607262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_60608658_60634464
transcript_27267.known	chr18	+	2948	14	FSM	ENSMUSG00000024603.9	ENSMUST00000223984.2	2948	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	65.0224358184413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATACAACGAGAACAATAA	NA	False	NA	NA	False	AGTAAA	-17	NA	60659256	60691011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_60659438_60667664_60667736_60671335_60671515_60674643_60674688_60677110_60677219_60678428_60678450_60678819_60678894_60679292_60679406_60679838_60679949_60683257_60683332_60684959_60685015_60685916_60686025_60688178_60688277_60689299
transcript_27268.known	chr18	+	3738	13	FSM	ENSMUSG00000024603.9	ENSMUST00000025505.7	3738	13	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_9	21.4333592534835	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGGTTTCACAAGTACT	NA	False	NA	34	True	AATAAA	-24	NA	60659272	60691838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_60659438_60667664_60667736_60671335_60671515_60674643_60674688_60677110_60677219_60678819_60678894_60679292_60679406_60679838_60679949_60683257_60683332_60684959_60685015_60685916_60686025_60688178_60688277_60689299
transcript_27270.nnic	chr18	+	504	3	NNC	ENSMUSG00000024603.9	novel	1724	9	NA	NA	-17	-4904	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	96.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTAGCAGTAAATGTTT	NA	False	NA	NA	False	NA	NA	NA	60659239	60671136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_60659438_60667664_60667736_60670901
transcript_27271.known	chr18	+	1530	2	FSM	ENSMUSG00000024603.9	ENSMUST00000223590.2	1530	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTTACAAAGTTTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	60659285	60661050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_60659438_60659672
transcript_27274.known	chr18	+	2210	11	FSM	ENSMUSG00000024604.8	ENSMUST00000025506.7	2210	11	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_10	72.8288404411329	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTTTTAAGACTGGATTA	NA	False	NA	35	True	ATTAAA	-45	NA	60693807	60705882	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_60693952_60694322_60694377_60696837_60696868_60697434_60697568_60698689_60698791_60699424_60699598_60700442_60700644_60702428_60702594_60703852_60703942_60704071_60704204_60704894
transcript_27277.known	chr18	+	602	5	FSM	ENSMUSG00000024608.12	ENSMUST00000118551.8	602	5	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_1	11592.6756914657	807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTATTTTGGTTCTGGTGT	NA	False	NA	63	True	AATAAA	-13	NA	60907752	60911613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_60907854_60909472_60909624_60910001_60910164_60910884_60910962_60911502
transcript_2728.known	chr1	+	1066	9	FSM	ENSMUSG00000053332.14	ENSMUST00000159890.8	1066	9	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_5	979.227469743369	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862757	160866109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863815_160864118_160864150_160864389_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_27280.known	chr18	+	755	6	FSM	ENSMUSG00000024608.12	ENSMUST00000235966.2	755	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10470.3724556484	8092	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGGTTCTGGTGTTGTG	NA	False	NA	67	True	AATAAA	-17	NA	60880220	60911617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_60880294_60907581_60907759_60909472_60909624_60910001_60910164_60910884_60910962_60911502
transcript_27281.known	chr18	+	597	5	FSM	ENSMUSG00000024608.12	ENSMUST00000025511.11	597	5	0	0	0	0	multi-exon	FALSE	canonical	3	20921	junction_1	2863.01274883644	34445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTGGTGTTGTGT	NA	False	NA	68	True	AATAAA	-18	NA	60907667	60911618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_60907759_60909472_60909624_60910001_60910164_60910884_60910962_60911502
transcript_27282.known	chr18	+	1410	9	FSM	ENSMUSG00000024610.16	ENSMUST00000097563.9	1410	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	11.7020297384685	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACACTCTTGCTTCTGCC	NA	False	NA	1	True	AATAAA	-11	NA	60936919	60945718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_60937083_60940979_60941150_60941303_60941384_60942099_60942163_60943053_60943147_60943399_60943491_60944365_60944558_60944930_60944994_60945223
transcript_27283.known	chr18	+	1224	8	FSM	ENSMUSG00000024610.16	ENSMUST00000050487.16	1224	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	5.45108115095397	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTGCTTCTGCCTCTTCA	NA	False	NA	7	True	AATAAA	-17	NA	60936919	60945724	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_60937083_60940979_60941150_60941303_60941384_60942099_60942163_60943053_60943147_60943399_60943491_60944930_60944994_60945223
transcript_27284.known	chr18	-	4595	26	FSM	ENSMUSG00000024613.17	ENSMUST00000175934.8	4595	26	0	0	0	0	multi-exon	FALSE	canonical	2	549	junction_9	234.649375878139	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	-18	True	AATAAA	-17	NA	60982001	60946826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60960411_60960520_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
transcript_27285.known	chr18	-	4529	25	FSM	ENSMUSG00000024613.17	ENSMUST00000176630.8	4529	25	0	0	0	0	multi-exon	FALSE	canonical	2	677	junction_9	198.19802369656	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGCCTTCCCCATGCAT	NA	False	NA	-18	True	AATAAA	-17	NA	60982043	60946826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_60947261_60947594_60947641_60948029_60948125_60949072_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954714_60954837_60955875_60956063_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
transcript_27293.nic	chr18	-	494	4	ISM	ENSMUSG00000024613.17	ENSMUST00000177172.8	3229	20	-68	21548	-15	-895	5prime_fragment	FALSE	canonical	3	1086	junction_1	85.7684220574345	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAAGGTGAGTTTATTTCC	NA	False	NA	NA	False	AGTAAA	-2	NA	60982058	60972649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr18_-_60972706_60976297_60976444_60978882_60978939_60981822
transcript_27294.known	chr18	-	4064	23	FSM	ENSMUSG00000024613.17	ENSMUST00000163446.9	4064	23	0	0	0	0	multi-exon	FALSE	canonical	2	104	junction_4	297.096601286295	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTGCTTTCCAGTACGC	NA	False	NA	4	True	AAAAAG	-21	NA	60982031	60949068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_60949601_60951101_60951283_60951933_60952017_60952459_60952683_60954704_60954837_60955875_60956063_60960411_60960520_60961436_60961632_60961727_60961908_60962085_60962188_60964584_60964753_60964845_60965068_60965237_60965382_60965498_60965697_60965792_60966003_60966491_60966705_60968726_60968979_60970968_60971043_60971746_60971934_60972643_60972706_60976297_60976444_60978882_60978939_60981822
transcript_27295.known	chr18	-	3410	12	FSM	ENSMUSG00000024622.9	ENSMUST00000237443.2	3410	12	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_5	21.5206992420732	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAGAAAAAAAAA	5846	False	NA	NA	False	NA	NA	NA	61310100	61282364	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_61283591_61285256_61285356_61288099_61288198_61288331_61288505_61290414_61290591_61290686_61290834_61295968_61296101_61298556_61298656_61300267_61300766_61304279_61304455_61305222_61305359_61309649
transcript_27296.known	chr18	-	7814	4	FSM	ENSMUSG00000034320.15	ENSMUST00000146409.8	7814	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	1.4142135623731	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTAGTGCTGGAAGTT	8715	False	NA	-2	True	AATAAA	-29	NA	61344684	61325990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_61332731_61334752_61335476_61337381_61337518_61344469
transcript_27298.known	chr18	-	965	1	FSM	ENSMUSG00000091957.4	ENSMUST00000170335.4	965	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23157	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGACCTGCAGAGATGG	7423	False	NA	NA	False	NA	NA	NA	61393043	61392078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_61392100_61393000
transcript_27299.known	chr18	-	879	1	FSM	ENSMUSG00000091957.4	ENSMUST00000076842.7	879	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	890	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGGTTTTTATATGAGAA	7434	False	NA	NA	False	NA	NA	NA	61393032	61392153	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_61392200_61393000
transcript_27300.known	chr18	-	3656	12	FSM	ENSMUSG00000033871.15	ENSMUST00000075299.13	3656	12	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	7.10022697809696	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGGCTCTGATTACTGT	3293	False	NA	NA	False	AAAAAG	-37	NA	61533502	61431206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_61431855_61432656_61432812_61435689_61435812_61437778_61437855_61440277_61441086_61442103_61442166_61442716_61442754_61443477_61444580_61445224_61445342_61448807_61449021_61456205_61456380_61533360
transcript_27302.known	chr18	+	1222	11	FSM	ENSMUSG00000024576.15	ENSMUST00000167187.8	1222	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	819.69914602859	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTGTGGACAACCATTTAC	843	False	NA	NA	False	NA	NA	NA	61688759	61720602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
transcript_27303.known	chr18	+	2259	11	FSM	ENSMUSG00000024576.15	ENSMUST00000170862.8	2259	11	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_5	708.334701959462	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGTGTGTTGCTTAGATAA	493	False	NA	-31	True	NA	NA	NA	61688409	61721253	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61704944_61705029_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
transcript_27305.known	chr18	+	1484	10	FSM	ENSMUSG00000024576.15	ENSMUST00000115246.9	1484	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	613.012254927549	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTGTATTGTAACTTAT	472	False	NA	25	True	ATTAAA	-16	NA	61688388	61715187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61715106
transcript_27306.known	chr18	+	4083	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165123.8	4083	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	613.012254927549	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGAGAGGCTGGTTGTCT	428	False	NA	13	True	AATAAA	-16	NA	61688344	61723132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713523_61720496
transcript_27307.nic	chr18	+	1686	10	NIC	ENSMUSG00000024576.15	novel	1484	10	NA	NA	-120	0	combination_of_known_junctions	TRUE	canonical	2	37	junction_9	601.591408035572	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTATTGTAACTTATTC	308	False	NA	27	True	ATTAAA	-18	NA	61688224	61715189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61715106
transcript_27308.known	chr18	+	2323	10	FSM	ENSMUSG00000024576.15	ENSMUST00000165721.8	2323	10	0	0	0	0	multi-exon	FALSE	canonical	3	816	junction_9	364.192494210831	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGTGAAATTTTTTTA	467	False	NA	27	True	ATTAAA	-20	NA	61688383	61721375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_61688945_61689573_61689681_61701334_61701462_61702534_61702634_61708480_61708621_61709577_61709657_61710248_61710324_61711737_61711845_61713409_61713559_61720496
transcript_27315.nnic	chr18	+	947	3	NNC	ENSMUSG00000024576.15	novel	3204	9	NA	NA	-35	-278	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	887.5	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACCACTGGTCATTTGTA	393	False	NA	NA	False	AATAAA	-17	NA	61688309	61691031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_61688945_61689573_61689681_61690826
transcript_27316.known	chr18	+	2275	2	FSM	ENSMUSG00000024576.15	ENSMUST00000165381.2	2275	2	0	0	0	0	multi-exon	FALSE	canonical	3	1813	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACCAGTC	489	False	NA	NA	False	NA	NA	NA	61688405	61691309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_61688945_61689573
transcript_27321.known	chr18	+	588	3	FSM	ENSMUSG00000098098.8	ENSMUST00000183087.2	588	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	11.5	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAATGACTTTCTTAATAG	NA	False	NA	17	True	AATAAA	-17	NA	61772723	61780543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_61772840_61778233_61778437_61780274
transcript_27322.known	chr18	+	483	3	FSM	ENSMUSG00000098098.8	ENSMUST00000183083.8	483	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	32.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTGTGCGCAGGGATCA	NA	False	NA	NA	False	NA	NA	NA	61772612	61780363	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_61772804_61778233_61778437_61780274
transcript_27323.known	chr18	+	693	3	FSM	ENSMUSG00000024578.4	ENSMUST00000025471.4	693	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATTGATTGGGCTTGTTC	NA	False	NA	NA	False	AGTAAA	-21	NA	61821005	61825609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_61821076_61823188_61823479_61825276
transcript_27325.known	chr18	-	2017	6	FSM	ENSMUSG00000024579.8	ENSMUST00000025472.7	2017	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	12.1061967603372	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTGACTTATTCTTTTT	NA	False	NA	-1	True	TATAAA	-16	NA	61840706	61829907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_61831048_61831434_61831576_61832363_61832576_61835266_61835442_61836582_61836790_61840564
transcript_27326.known	chr18	-	4038	4	FSM	ENSMUSG00000024580.9	ENSMUST00000062991.9	4038	4	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	10.9645894689324	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTCGAGTTCTCTCATGA	NA	False	NA	-2	True	ATTAAA	-14	NA	61859394	61845494	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_61849199_61851824_61851907_61852772_61852927_61859296
transcript_27329.nnic	chr18	-	1827	7	NNC	ENSMUSG00000033032.16	novel	2842	16	NA	NA	47601	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	12.0749971244533	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCAGAGGGTAGCTGGC	NA	False	NA	1	True	AATAAA	-21	NA	61872081	61863331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_61864382_61866774_61866904_61868638_61868818_61869853_61870019_61870566_61870679_61871754_61871828_61871962
transcript_27330.nnic	chr18	-	1715	5	NNC	ENSMUSG00000033032.16	novel	2842	16	NA	NA	49237	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	5.2618912949623	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCAGAGGGTAGCTGGC	NA	False	NA	1	True	AATAAA	-21	NA	61870445	61863331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_61864382_61866774_61866904_61868638_61868818_61869853_61870019_61870253
transcript_27331.nnic	chr18	+	1027	3	NNC	ENSMUSG00000098702.2	novel	423	2	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	1.5	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACTACACCCGATCTCT	NA	False	NA	3	True	AATAAA	-17	NA	61859477	61868980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_61860074_61867419_61867539_61868668
transcript_27332.known	chr18	+	890	2	FSM	ENSMUSG00000098702.2	ENSMUST00000184678.2	890	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCGATCTCTCAGTTTGC	NA	False	NA	11	True	AATAAA	-25	NA	61859503	61868988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_61860074_61868668
transcript_27333.known	chr18	+	1865	1	FSM	ENSMUSG00000098702.2	ENSMUST00000184181.2	1865	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACTTGGTCAGACTTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	61859460	61861325	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_61859500_61861300
transcript_27334.known	chr18	-	2144	1	FSM	ENSMUSG00000045730.5	ENSMUST00000053640.5	2144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCATTGCACCCGTTTCTT	NA	False	NA	NA	False	AATAAA	-15	NA	62313030	62310886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_62310900_62313000
transcript_27336.known	chr18	-	4254	22	FSM	ENSMUSG00000042211.8	ENSMUST00000048688.8	4254	22	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_21	37.2590368590547	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGTTTCCAGAGCATTTC	NA	False	NA	-48	True	AATAAA	-16	NA	62681766	62637225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_62637952_62638545_62638660_62639008_62639113_62639674_62639821_62640904_62641072_62643780_62643884_62644084_62644186_62647865_62648616_62650034_62650215_62651562_62651683_62652824_62653039_62653753_62653897_62655420_62655592_62659202_62659334_62660247_62660342_62662622_62662761_62663759_62663898_62666579_62666746_62666971_62667136_62669186_62669321_62673951_62674118_62681682
transcript_27341.known	chr18	-	809	2	FSM	ENSMUSG00000041789.8	ENSMUST00000048109.7	809	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTTGCACTAGAAGCTGT	NA	False	NA	NA	False	AATAAA	-18	NA	62889418	62887860	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_62888246_62888994
transcript_27342.known	chr18	-	2101	3	FSM	ENSMUSG00000041789.8	ENSMUST00000067450.3	2101	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	4	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTTACTTGGGTAACCCT	NA	False	NA	NA	False	NA	NA	NA	62889386	62884744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_62886405_62888196_62888246_62888994
transcript_27343.known	chr18	+	1129	13	FSM	ENSMUSG00000024581.14	ENSMUST00000150267.2	1129	13	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_10	86.248671487353	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACGAGTACTCGGGAGGCC	NA	False	NA	NA	False	NA	NA	NA	63110971	63130003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63125411_63125562_63127382_63127463_63128033_63128164_63129887
transcript_27347.known	chr18	+	3567	12	FSM	ENSMUSG00000024581.14	ENSMUST00000025474.14	3567	12	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_8	19.1691039293584	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTCAGTTTTATTTGCT	NA	False	NA	6	True	AATAAA	-18	NA	63110901	63132521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_63111096_63113536_63113605_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
transcript_27353.known	chr18	+	1191	11	FSM	ENSMUSG00000024581.14	ENSMUST00000236925.2	1191	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	72.5303384798389	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATCATAAGTAAAGCAGGAAA	NA	False	NA	NA	False	GATAAA	-5	NA	63110979	63130291	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_63111096_63115689_63115775_63116444_63116463_63117110_63117142_63119249_63119360_63119481_63119549_63120024_63120096_63124871_63124951_63127382_63127463_63128033_63128164_63129887
transcript_27360.known	chr18	-	4343	8	FSM	ENSMUSG00000024583.4	ENSMUST00000237004.2	4343	8	0	0	0	0	multi-exon	FALSE	canonical	3	853	junction_1	53.8088074120031	703	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTATTTGTTTGTTTATT	NA	False	NA	NA	False	AATAAA	-16	NA	63825508	63794164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_63797404_63804652_63804758_63807119_63807293_63808514_63808585_63809949_63810073_63812423_63812598_63815281_63815379_63825146
transcript_27365.known	chr18	-	6571	11	FSM	ENSMUSG00000024588.11	ENSMUST00000236586.3	6571	11	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_4	29.1315979650963	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTGTTGCTGTTGCTTATA	NA	False	NA	NA	False	NA	NA	NA	64622171	64585984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595286_64597156_64597256_64600798_64600906_64603752_64603888_64608127_64608277_64611721_64611842_64616404_64616529_64621971
transcript_27367.known	chr18	-	2059	10	FSM	ENSMUSG00000024588.11	ENSMUST00000025484.9	2059	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_9	95.9785212597583	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGCTGTGTACGCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	64622134	64590335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_64591289_64591725_64591786_64594591_64594757_64595177_64595286_64597156_64597256_64600798_64600906_64603752_64603888_64608127_64608277_64611721_64611842_64621971
transcript_2737.known	chr1	+	346	8	FSM	ENSMUSG00000053332.14	ENSMUST00000159663.8	346	8	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_6	1912.24889508	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160862765_160863321_160863375_160863552_160863585_160863777_160863815_160864118_160864150_160864389_160864423_160865794_160865843_160866026
transcript_27374.known	chr18	-	2687	15	FSM	ENSMUSG00000024587.11	ENSMUST00000025483.11	2687	15	0	0	0	0	multi-exon	FALSE	canonical	3	2259	junction_14	785.439045946889	1165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAAAACACTTTGCTGA	NA	False	NA	NA	False	AATAAA	-20	NA	64649679	64632728	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
transcript_27376.known	chr18	-	2745	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237400.2	2745	15	0	0	0	0	multi-exon	FALSE	canonical	3	3478	junction_14	514.735973533014	1544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTGACTTATTTTCTC	NA	False	NA	NA	False	AATAAA	-31	NA	64649723	64632717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
transcript_27380.known	chr18	-	2103	15	FSM	ENSMUSG00000024587.11	ENSMUST00000237369.2	2103	15	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_12	1341.18505510642	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTCTGACATCCAGTA	NA	False	NA	-10	True	AATAAA	-26	NA	64649626	64633283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_64633721_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644970_64645054_64645121_64648396_64648480_64649486
transcript_27407.known	chr18	-	2268	14	FSM	ENSMUSG00000024587.11	ENSMUST00000237585.2	2268	14	0	0	0	0	multi-exon	FALSE	canonical	3	3478	junction_13	534.16599817797	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATTATGGTCTGACATC	NA	False	NA	-15	True	AATAAA	-21	NA	64649508	64633288	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_64633721_64634373_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648480_64649486
transcript_27448.known	chr18	-	1784	15	FSM	ENSMUSG00000024587.11	ENSMUST00000236186.2	1784	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1471.48717116323	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATCTAATACTGTTCTC	NA	False	NA	NA	False	AATAAA	-15	NA	64649586	64633973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_64634156_64634373_64634506_64634814_64634947_64636578_64636693_64637408_64637545_64637918_64638119_64638227_64638450_64640842_64640930_64642315_64642387_64643523_64643603_64644681_64644772_64644855_64644949_64645054_64645121_64648396_64648477_64649486
transcript_27449.known	chr18	+	737	6	FSM	ENSMUSG00000024516.14	ENSMUST00000126432.9	737	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	146.338511677548	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTTTTGTGGCCTCTGA	NA	False	NA	NA	False	AATAAA	-21	NA	65933616	65950736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_65933783_65942515_65942626_65945735_65945813_65947908_65948029_65949891_65949950_65950530
transcript_27451.known	chr18	+	860	6	FSM	ENSMUSG00000024516.14	ENSMUST00000025394.14	860	6	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_3	14.5244621242922	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGAGTCTGCCCAGTCTC	NA	False	NA	NA	False	AATAAA	-40	NA	65933585	65950755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_65933783_65942515_65942626_65945735_65945886_65947908_65948029_65949891_65949950_65950530
transcript_27452.known	chr18	+	2829	5	FSM	ENSMUSG00000024516.14	ENSMUST00000139538.9	2829	5	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_1	12.6565200588471	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTTTTGTGGCCTCTGA	NA	False	NA	NA	False	AATAAA	-21	NA	65933620	65950736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_65933783_65942515_65942626_65945735_65948029_65949891_65949950_65950530
transcript_27453.known	chr18	+	821	7	FSM	ENSMUSG00000024516.14	ENSMUST00000153193.3	821	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	174.951818764164	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGCTTCCTTTTGTGGCC	NA	False	NA	NA	False	AATAAA	-16	NA	65933642	65950731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_65933783_65934521_65934564_65942515_65942626_65945735_65945886_65947908_65948029_65949891_65949950_65950530
transcript_27454.known	chr18	-	3581	14	FSM	ENSMUSG00000041891.17	ENSMUST00000048260.15	3581	14	0	0	0	0	multi-exon	FALSE	canonical	3	538	junction_1	125.2370060817	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATGTCTGTATCCTGCTG	NA	False	NA	-3	True	AATAAA	-34	NA	66135710	66113808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_66115782_66116895_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
transcript_27455.known	chr18	-	4676	13	FSM	ENSMUSG00000041891.17	ENSMUST00000236866.2	4676	13	0	0	0	0	multi-exon	FALSE	canonical	3	864	junction_5	66.5663307452716	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGGTTTTTTCCTCCAT	NA	False	NA	-22	True	AATAAA	-15	NA	66135710	66113827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
transcript_27458.nic	chr18	-	989	8	ISM	ENSMUSG00000041891.17	ENSMUST00000120461.9	1741	14	-63	10574	-45	0	5prime_fragment	FALSE	canonical	3	865	junction_5	52.4878994801348	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAATTAGACAAGAAGAAG	NA	False	NA	-11	True	AAAAAG	-40	NA	66135755	66126208	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr18_-_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
transcript_27459.known	chr18	-	1741	14	FSM	ENSMUSG00000041891.17	ENSMUST00000120461.9	1741	14	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	258.280362323832	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTGTCTGACAACCTG	NA	False	NA	NA	False	NA	NA	NA	66135692	66115634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_66115782_66116891_66116959_66117223_66117346_66120825_66120977_66124402_66124474_66124564_66124759_66126145_66126279_66126649_66126709_66127855_66127980_66129752_66129853_66130670_66130733_66131445_66131554_66131636_66131792_66135444
transcript_27460.known	chr18	-	6572	11	FSM	ENSMUSG00000046318.17	ENSMUST00000130300.3	6572	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	3.55527776692624	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGCTCTCCTGTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	66425738	66189925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_66194592_66198939_66198976_66199653_66199690_66199799_66199940_66204271_66204393_66209378_66209483_66216165_66216319_66217808_66217944_66227068_66227122_66424202_66424284_66424691
transcript_27461.known	chr18	+	2727	3	FSM	ENSMUSG00000024521.9	ENSMUST00000025399.9	2727	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_2	7	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTCTTTCTGTGTGTTTT	NA	False	NA	22	True	AATAAA	-34	NA	66591603	66598631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_66591884_66593913_66594070_66596340
transcript_27463.known	chr18	+	2524	1	FSM	ENSMUSG00000109901.3	ENSMUST00000210564.3	2524	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTATTTCCTCGCTTTT	NA	False	NA	85	True	CATAAA	-20	NA	67338436	67340960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_67338400_67341000
transcript_27465.known	chr18	-	2494	11	FSM	ENSMUSG00000062526.5	ENSMUST00000073054.5	2494	11	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	12.1016527796826	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGGATCTTTTCTAA	NA	False	NA	1	True	GATAAA	-23	NA	67378901	67358113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_67358956_67359853_67359995_67360667_67360791_67360874_67360950_67361083_67361193_67362000_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378452
transcript_27468.nnic	chr18	-	2130	10	NNC	ENSMUSG00000062526.5	novel	2494	11	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	16.5492157883652	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGGATCTTTTCTAA	NA	False	NA	1	True	GATAAA	-23	NA	67378373	67358113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_67358956_67359853_67359995_67360667_67360791_67360874_67360947_67362000_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378176
transcript_27470.known	chr18	-	2511	9	FSM	ENSMUSG00000062526.5	ENSMUST00000236244.2	2511	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_8	12.4899959967968	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGTGTATGGTGATACG	NA	False	NA	NA	False	NA	NA	NA	67378348	67358761	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_67358956_67359853_67359995_67360667_67360791_67360874_67362076_67362745_67362850_67366671_67366781_67370420_67370804_67377034_67377119_67378176
transcript_27482.known	chr18	+	5054	8	FSM	ENSMUSG00000024525.8	ENSMUST00000025403.8	5054	8	0	0	0	0	multi-exon	FALSE	canonical	3	959	junction_6	106.526800307122	950	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTGGTCGCCACATCTT	NA	False	NA	NA	False	NA	NA	NA	67422255	67455542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_67422577_67435245_67435380_67439740_67439846_67442121_67442168_67443716_67443826_67448689_67448799_67449951_67450104_67451464
transcript_27484.known	chr18	+	1115	5	FSM	ENSMUSG00000024526.10	ENSMUST00000025404.10	1115	5	0	0	0	0	multi-exon	FALSE	canonical	1	47	junction_1	40.4042077016738	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGCAACTGGTTTGT	6208	False	NA	28	True	AATAAA	-26	NA	67476673	67500855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_67476911_67491779_67491925_67493165_67493313_67499444_67499627_67500451
transcript_27487.known	chr18	+	1758	4	FSM	ENSMUSG00000001473.8	ENSMUST00000001513.8	1758	4	0	0	0	0	multi-exon	FALSE	canonical	3	606	junction_3	34.2928563989645	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCGGTCTCTTGAACTTC	NA	False	NA	12	True	AATAAA	-14	NA	67523786	67535819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_67523885_67524394_67524504_67526015_67526127_67534379
transcript_27491.known	chr18	+	1059	7	FSM	ENSMUSG00000024537.6	ENSMUST00000025418.4	1059	7	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	27.1871088733041	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGGTTTTATCTGGAAAG	NA	False	NA	26	True	AATAAA	-32	NA	67774668	67787232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_67774806_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786222_67786344_67786955
transcript_27492.known	chr18	+	1300	7	FSM	ENSMUSG00000024537.6	ENSMUST00000235799.2	1300	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	156.039168871864	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCGGTTTTATCTGGAAAG	NA	False	NA	26	True	AATAAA	-32	NA	67774670	67787232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_67775049_67777378_67777551_67779062_67779122_67781197_67781317_67781842_67782017_67786222_67786344_67786955
transcript_27498.known	chr18	+	795	3	FSM	ENSMUSG00000024537.6	ENSMUST00000236522.2	795	3	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_2	23.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	67774677	67779557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_67774806_67777378_67777551_67779062
transcript_27501.known	chr18	-	1497	10	FSM	ENSMUSG00000024539.18	ENSMUST00000120934.8	1497	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	167.715440958197	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTTGGTTTGTGTGTGTG	NA	False	NA	-14	True	ATTAAA	-19	NA	67857643	67798580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_67798945_67805736_67805839_67808789_67808900_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
transcript_27502.known	chr18	-	1568	10	FSM	ENSMUSG00000024539.18	ENSMUST00000025420.14	1568	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	132.404915801473	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGTTGGTTTGTGTGTGT	NA	False	NA	-15	True	ATTAAA	-18	NA	67857658	67798581	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_67798945_67805736_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
transcript_27507.known	chr18	-	2667	9	FSM	ENSMUSG00000024539.18	ENSMUST00000122412.2	2667	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	140.12890271104	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATTGTCCCTTACCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	67857665	67804281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_67805839_67808789_67808957_67810779_67810933_67813909_67814120_67814512_67814648_67821960_67822060_67828693_67828795_67844906_67844998_67857511
transcript_27511.known	chr18	+	3542	9	FSM	ENSMUSG00000079614.5	ENSMUST00000025421.9	3542	9	0	0	0	0	multi-exon	FALSE	canonical	3	1509	junction_8	173.331285043987	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGTTGTCTTATAAAAAAG	NA	False	NA	19	True	AATAAA	-21	NA	67907945	67928557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933_67925085_67926219
transcript_27517.known	chr18	+	1684	8	FSM	ENSMUSG00000079614.5	ENSMUST00000237700.2	1684	8	0	0	0	0	multi-exon	FALSE	canonical	3	1621	junction_6	144.078210053585	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGCTTTGTGAGACCAGTG	NA	False	NA	NA	False	AATAAA	-11	NA	67908044	67925663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_67908191_67912274_67912326_67916984_67917132_67917956_67918169_67920225_67920325_67921761_67921903_67922409_67922568_67924933
transcript_27521.known	chr18	+	1425	4	FSM	ENSMUSG00000024542.10	ENSMUST00000224387.2	1425	4	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	11.1455023315337	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACCAAAAAAAAAAAAAAAAA	113	False	NA	NA	False	NA	NA	NA	67933182	67938447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_67933257_67933724_67933896_67936058_67936227_67937435
transcript_27525.known	chr18	-	9651	4	FSM	ENSMUSG00000038121.7	ENSMUST00000042852.7	9651	4	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_3	16.3367343397905	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGCTGTGGATACTGTTG	NA	False	NA	NA	False	AATAAA	-14	NA	68433404	68393257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_68402024_68405633_68405746_68408832_68409346_68433144
transcript_27533.nnic	chr18	+	2072	12	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	-41	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	327.063064154123	338	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	88	True	AATAAA	-18	NA	68433384	68454978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388_68454695_68454726
transcript_27534.nnic	chr18	+	2071	12	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	-41	1	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_11	327.063064154123	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	88	True	AATAAA	-18	NA	68433384	68454978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388_68454707_68454739
transcript_27545.known	chr18	+	5008	11	FSM	ENSMUSG00000009535.14	ENSMUST00000009679.11	5008	11	0	0	0	0	multi-exon	FALSE	canonical	3	765	junction_7	139.06832852954	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTTGATTCATTTCTAG	NA	False	NA	NA	False	NA	NA	NA	68433425	68457923	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296_68453331_68454388
transcript_27548.nnic	chr18	+	1907	11	NNC	ENSMUSG00000009535.14	novel	5008	11	NA	NA	-41	1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	430.6471989924	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGCAATTCTGAGACTCT	NA	False	NA	88	True	AATAAA	-18	NA	68433384	68454978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68451064_68451183_68452188_68452291_68453296_68453331_68454388_68454695_68454726
transcript_27554.nic	chr18	+	1586	10	ISM	ENSMUSG00000009535.14	ENSMUST00000009679.11	5008	11	-41	4521	-41	1087	5prime_fragment	FALSE	canonical	3	765	junction_7	145.735681591328	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTTTTTCTGATACATT	NA	False	NA	12	True	ATTAAA	-13	NA	68433384	68453402	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68447058_68447224_68451064_68451183_68452188_68452291_68453296
transcript_27556.known	chr18	+	1852	10	FSM	ENSMUSG00000009535.14	ENSMUST00000025427.14	1852	10	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	337.084266125157	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTGCAATTCTGAGACTC	NA	False	NA	87	True	AATAAA	-17	NA	68433470	68454977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_68433497_68438850_68439271_68440716_68440859_68442391_68442518_68444678_68444792_68446735_68446918_68451064_68451183_68452188_68452291_68453296_68453331_68454388
transcript_27560.known	chr18	+	2986	20	FSM	ENSMUSG00000053477.19	ENSMUST00000202116.4	2986	20	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_17	23.6466368624176	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCTCCCACACTGTGGAG	3190	False	NA	NA	False	NA	NA	NA	69478789	69816461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_69479437_69480349_69480442_69482142_69482216_69594932_69594995_69598421_69598519_69653035_69653098_69697104_69697235_69697705_69697756_69766647_69766754_69769901_69770036_69775953_69776087_69784292_69784361_69785464_69785544_69788031_69788109_69790817_69791022_69808769_69808906_69811037_69811189_69814639_69814870_69815753_69815895_69816147
transcript_27564.nic	chr18	+	1258	4	ISM	ENSMUSG00000053477.19	ENSMUST00000114978.9	2437	13	84952	-328	-1759	140	3prime_fragment	FALSE	canonical	3	57	junction_1	39.4067112163511	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTGTTGATTTGTTTCA	NA	False	NA	NA	False	NA	NA	NA	69811010	69816844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr18_+_69811201_69814639_69814870_69815753_69815895_69816147
transcript_27569.known	chr18	+	1618	11	FSM	ENSMUSG00000038903.14	ENSMUST00000043929.11	1618	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	8.64869932417586	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCATGTCCTTCCA	NA	False	NA	3	True	AATAAA	-14	NA	70058536	70102555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_70058692_70071912_70072042_70073170_70073258_70076798_70076934_70079494_70079621_70080121_70080251_70089052_70089136_70093471_70093578_70094530_70094615_70099860_70099938_70102048
transcript_27571.nic	chr18	-	3247	9	NIC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_5	57.5298835389052	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTGTTACGTCTCCT	NA	False	NA	-2	True	AATAAA	-18	NA	70605575	70585282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600401_70600557_70600829_70601589_70602519_70602849_70604743_70605051_70605361
transcript_27573.known	chr18	-	2291	9	FSM	ENSMUSG00000044906.7	ENSMUST00000067556.4	2291	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_5	54.5590276672889	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAACAAAAGGGGAAGACAC	NA	False	NA	NA	False	NA	NA	NA	70605551	70586210	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70600557_70600829_70601589_70602519_70602849_70604743_70605051_70605361
transcript_27578.nic	chr18	-	3512	8	NIC	ENSMUSG00000044906.7	novel	1715	9	NA	NA	8	0	intron_retention	FALSE	canonical	3	82	junction_4	46.2782180878624	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTGTTACGTCTCCT	NA	False	NA	-2	True	AATAAA	-18	NA	70605567	70585282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600401_70601589_70602519_70602849_70604743_70605051_70605361
transcript_27581.nic	chr18	-	3814	8	NIC	ENSMUSG00000044906.7	novel	2291	9	NA	NA	-293	0	intron_retention	FALSE	canonical	3	98	junction_4	41.1701298496463	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTTGTTACGTCTCCT	NA	False	NA	-2	True	AATAAA	-18	NA	70605873	70585282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_-_70586460_70589544_70589616_70591387_70591520_70597032_70597136_70600405_70601589_70602519_70602849_70604743_70605051_70605361
transcript_27588.known	chr18	-	3317	6	FSM	ENSMUSG00000044906.7	ENSMUST00000212683.2	3317	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	79.1722173492697	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATGTTGTTACGTCTCC	NA	False	NA	-3	True	AATAAA	-17	NA	70605580	70585283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_70586460_70597032_70597136_70600405_70601589_70602519_70602849_70604743_70605051_70605361
transcript_27589.known	chr18	-	4393	4	FSM	ENSMUSG00000044906.7	ENSMUST00000237800.2	4393	4	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_3	21.483844059096	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATTAGGTAAATTACTGA	NA	False	NA	NA	False	AATAAA	-21	NA	70605575	70598045	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_70601589_70602519_70602849_70604743_70605051_70605361
transcript_27594.nnic	chr18	-	2500	10	NNC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	-44	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_6	108.067651422387	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGGCTCTCACTGTAAG	NA	False	NA	-17	True	AATAAA	-18	NA	70663383	70641755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658414_70658600_70659627_70659793_70661772_70661899_70663258
transcript_27597.known	chr18	-	2736	10	FSM	ENSMUSG00000038425.19	ENSMUST00000161542.8	2736	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_9	94.1501296524877	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCTCACTGTAAGTTGTG	NA	False	NA	-12	True	AATAAA	-23	NA	70663209	70641750	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70662821
transcript_27598.known	chr18	-	2591	10	FSM	ENSMUSG00000038425.19	ENSMUST00000043286.15	2591	10	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_9	76.3322820564839	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAGGCTCTCACTGTAAGT	NA	False	NA	-16	True	AATAAA	-19	NA	70663505	70641754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70661772_70661899_70663258
transcript_27600.nnic	chr18	-	2363	9	NNC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_6	112.236357745608	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGGCTCTCACTGTAAG	NA	False	NA	-17	True	AATAAA	-18	NA	70663372	70641755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658414_70658600_70659627_70659793_70663258
transcript_27603.nnic	chr18	-	2331	9	NIC	ENSMUSG00000038425.19	novel	2778	10	NA	NA	-33	0	combination_of_known_splicesites	FALSE	canonical	3	116	junction_8	75.0961883187156	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTAGGCTCTCACTGTAAG	NA	False	NA	-17	True	AATAAA	-18	NA	70663372	70641755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_-_70642816_70649864_70650068_70650447_70650576_70654920_70655013_70655772_70655952_70656233_70656471_70658446_70658600_70659627_70659793_70663258
transcript_27607.known	chr18	-	4971	4	FSM	ENSMUSG00000036941.3	ENSMUST00000041138.3	4971	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	4.32049379893857	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTTGTCCTGCGGTTCT	NA	False	NA	NA	False	NA	NA	NA	73887550	73868108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_73872372_73875407_73875873_73880237_73880403_73887472
transcript_27608.known	chr18	-	2638	16	FSM	ENSMUSG00000024556.5	ENSMUST00000025439.5	2638	16	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_8	47.5095312074909	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAATGCCTTCTTTTGTA	371	False	NA	NA	False	AATAAA	-16	NA	73948509	73902973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_73903880_73906200_73906300_73908449_73908521_73914112_73914216_73918765_73918909_73921424_73921540_73924154_73924269_73924679_73924778_73924871_73924982_73927516_73927621_73927851_73928014_73929384_73929461_73930899_73931050_73934799_73934934_73938122_73938241_73948374
transcript_27617.known	chr18	-	715	4	FSM	ENSMUSG00000024556.5	ENSMUST00000237619.2	715	4	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_1	22.8375908439475	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATCTTTGTTTTTGTAG	360	False	NA	NA	False	AATAAA	-13	NA	73948520	73930732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_73931050_73934799_73934934_73938122_73938241_73948374
transcript_27625.nnic	chr18	-	1154	7	NNC	ENSMUSG00000036223.17	novel	2605	7	NA	NA	-1	-298	at_least_one_novel_splicesite	FALSE	canonical	3	85	junction_5	150.093766988802	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATTTTCAAAACGTAC	6725	False	NA	-19	True	AGTAAA	-16	NA	74340890	74329847	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339833_74339956_74340664
transcript_27626.known	chr18	-	2630	7	FSM	ENSMUSG00000036223.17	ENSMUST00000040188.16	2630	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	177.375699826354	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGGCATGGTGGCTTCC	6765	False	NA	-8	True	NA	NA	NA	74340850	74328369	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339859_74339956_74340600
transcript_27627.known	chr18	-	2605	7	FSM	ENSMUSG00000036223.17	ENSMUST00000177604.2	2605	7	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_6	32.9768437274131	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAAGGCATGGTGGCTTCC	6726	False	NA	-8	True	NA	NA	NA	74340889	74328369	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_74330123_74330584_74330755_74332970_74333109_74335660_74335759_74337334_74337460_74339859_74339956_74340664
transcript_2763.known	chr1	+	1614	7	FSM	ENSMUSG00000053332.14	ENSMUST00000162163.8	1614	7	0	0	0	0	multi-exon	FALSE	canonical	3	3085	junction_3	1089.57866474462	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862753	160866109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160862765_160863321_160863375_160863552_160864886_160865074_160865118_160865564_160865608_160865794_160865843_160866026
transcript_27633.known	chr18	+	2620	15	FSM	ENSMUSG00000024560.8	ENSMUST00000025444.8	2620	15	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_6	27.3663729300567	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGCTCTCTCTCAATAGT	NA	False	NA	14	True	AATAAA	-17	NA	74349201	74354564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_74349554_74350237_74350357_74350459_74350561_74350831_74351068_74351156_74351349_74351699_74351727_74351802_74352049_74352201_74352310_74352453_74352639_74352908_74353117_74353191_74353303_74353427_74353478_74353579_74353677_74353898_74354052_74354129
transcript_27634.nnic	chr18	+	2642	15	NNC	ENSMUSG00000024560.8	novel	2620	15	NA	NA	-3	0	at_least_one_novel_splicesite	TRUE	canonical	3	34	junction_8	60.669605408377	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGCTCTCTCTCAATAGT	NA	False	NA	14	True	AATAAA	-17	NA	74349191	74354564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_74349554_74350237_74350357_74350459_74350561_74350831_74351068_74351156_74351349_74351699_74351727_74351802_74352049_74352201_74352322_74352453_74352639_74352908_74353117_74353191_74353303_74353427_74353478_74353579_74353677_74353898_74354052_74354129
transcript_27636.known	chr18	+	2838	16	FSM	ENSMUSG00000024561.12	ENSMUST00000224047.2	2838	16	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_11	21.6794833886788	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74401361	74415756	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74408974_74409143_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74414949
transcript_27638.known	chr18	+	2833	15	FSM	ENSMUSG00000024561.12	ENSMUST00000097530.5	2833	15	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_10	20.6853245819645	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGCATAAGGTTGCCATG	NA	False	NA	NA	False	NA	NA	NA	74401245	74415803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_74401505_74402473_74402610_74406279_74406395_74406483_74406729_74406805_74406889_74407086_74407128_74407485_74407633_74407715_74407845_74408218_74408330_74408413_74408489_74409477_74409787_74409872_74410011_74410371_74410501_74410587_74410650_74414949
transcript_27639.known	chr18	+	1516	10	FSM	ENSMUSG00000036880.11	ENSMUST00000041053.11	1516	10	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_8	17.7325814376939	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAACCTTTTCTTGTTGGT	NA	False	NA	13	True	AATAAA	-17	NA	74912267	74939279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_74912337_74920189_74920357_74925421_74925551_74926357_74926475_74928201_74928350_74931382_74931559_74932115_74932246_74934367_74934439_74937071_74937227_74938925
transcript_27641.nic	chr18	+	2359	9	NIC	ENSMUSG00000036880.11	novel	1516	10	NA	NA	-286	0	intron_retention	FALSE	canonical	3	191	junction_7	16.7779617355625	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAACCTTTTCTTGTTGGT	NA	False	NA	13	True	AATAAA	-17	NA	74911981	74939279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_74912337_74920189_74920357_74925421_74925551_74926357_74926475_74928201_74928350_74931382_74932246_74934367_74934439_74937071_74937227_74938925
transcript_27643.known	chr18	+	775	7	FSM	ENSMUSG00000062328.9	ENSMUST00000079716.6	775	7	0	0	0	0	multi-exon	FALSE	canonical	3	6761	junction_1	2088.63605148325	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGACTGTCTAGTAGC	NA	False	NA	21	True	ATTAAA	-37	NA	75133547	75136452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_75133615_75134261_75134315_75134420_75134462_75134736_75134872_75135094_75135194_75135731_75135924_75136264
transcript_27646.nic	chr18	+	911	6	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	-20	-106	intron_retention	FALSE	canonical	3	6761	junction_1	2106.83161168614	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	33	True	AATAAA	-33	NA	75133527	75136345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_75133615_75134261_75134315_75134420_75134462_75134736_75135194_75135731_75135924_75136264
transcript_27647.nic	chr18	+	898	6	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	45	-106	intron_retention	FALSE	canonical	3	6761	junction_1	1972.2719285129	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	33	True	AATAAA	-33	NA	75133592	75136345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_75133615_75134261_75134315_75134420_75134872_75135094_75135194_75135731_75135924_75136264
transcript_27650.nic	chr18	+	1186	5	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	-20	-106	intron_retention	FALSE	canonical	3	6761	junction_1	1793.50557568132	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	33	True	AATAAA	-33	NA	75133527	75136345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_75133615_75134261_75134315_75134420_75135194_75135731_75135924_75136264
transcript_27654.nic	chr18	+	1661	4	NIC	ENSMUSG00000062328.9	novel	775	7	NA	NA	43	-106	intron_retention	FALSE	canonical	3	6761	junction_1	1869.49244448861	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTGGTGGTCTTTAA	NA	False	NA	33	True	AATAAA	-33	NA	75133590	75136345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_75133615_75134261_75134315_75134420_75135924_75136264
transcript_27656.known	chr18	+	524	3	FSM	ENSMUSG00000036299.6	ENSMUST00000236421.2	524	3	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	354	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAAGGTCCGTGTGAGCA	NA	False	NA	NA	False	ATTAAA	-43	NA	75138939	75142664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_75138972_75141721_75141898_75142348
transcript_27657.known	chr18	+	979	3	FSM	ENSMUSG00000036299.6	ENSMUST00000040284.6	979	3	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	315	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTCCTGCTTTTTGTCTTT	NA	False	NA	26	True	ATTAAA	-17	NA	75138938	75143004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_75139086_75141721_75141898_75142348
transcript_27658.known	chr18	+	1266	3	FSM	ENSMUSG00000036299.6	ENSMUST00000237263.2	1266	3	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_1	205.5	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCGATGTGTGTGTGTGT	NA	False	NA	NA	False	NA	NA	NA	75138970	75143223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_75139186_75141721_75141898_75142348
transcript_27663.known	chr18	+	2456	17	FSM	ENSMUSG00000035765.11	ENSMUST00000039608.9	2456	17	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_13	17.5886149255705	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGACTTATTTTTAA	NA	False	NA	18	True	AATAAA	-18	NA	75151855	75420035	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75363060_75363244_75376355_75376470_75419690
transcript_27664.nnic	chr18	+	2281	16	NIC	ENSMUSG00000035765.11	novel	2456	17	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_14	49.9165525875157	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACATGTGACTTATTTTTAA	NA	False	NA	18	True	AATAAA	-18	NA	75151847	75420035	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75247860_75248044_75252181_75252361_75256528_75256655_75258494_75258609_75259895_75259991_75332233_75332337_75376355_75376470_75419690
transcript_27669.known	chr18	+	1571	9	FSM	ENSMUSG00000035765.11	ENSMUST00000236220.2	1571	9	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_8	64.1424196612507	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTTTGTGTTATCTGT	NA	False	NA	NA	False	NA	NA	NA	75151851	75239490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_75152056_75176149_75176341_75186051_75186105_75188351_75188446_75189700_75189835_75196171_75196245_75213273_75213400_75215435_75215579_75238937
transcript_27677.known	chr18	+	8089	11	FSM	ENSMUSG00000024563.17	ENSMUST00000168423.9	8089	11	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_5	13.3850663054017	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGGAGTTGAGTATGGAA	NA	False	NA	10	True	AATAAA	-13	NA	76374650	76444034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_76375051_76395510_76395799_76419930_76420021_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
transcript_27688.known	chr18	+	1645	10	FSM	ENSMUSG00000024563.17	ENSMUST00000091831.13	1645	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	75.1282031834933	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCATCAAAGACTCGCTGT	NA	False	NA	NA	False	NA	NA	NA	76374771	76437801	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_76375051_76395510_76395799_76420998_76421193_76422109_76422245_76425980_76426056_76431518_76431573_76432853_76433067_76435149_76435288_76435453_76435599_76437677
transcript_27693.known	chr18	+	1538	8	FSM	ENSMUSG00000025421.16	ENSMUST00000145634.9	1538	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	170.606361581991	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAATTAGACATTGTT	NA	False	NA	19	True	NA	NA	NA	77031839	77059101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_77031882_77033038_77033054_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
transcript_27694.known	chr18	+	1640	8	FSM	ENSMUSG00000025421.16	ENSMUST00000026485.15	1640	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	170.606361581991	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAATTAGACATTGTT	NA	False	NA	19	True	NA	NA	NA	77032079	77059101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_77032224_77033038_77033054_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
transcript_27697.known	chr18	+	5477	7	FSM	ENSMUSG00000025421.16	ENSMUST00000097522.11	5477	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	128.264050562372	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATATATATAAAATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	77031787	77063003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_77031882_77038808_77038920_77042673_77042883_77044534_77044620_77052746_77052964_77054839_77054904_77058306
transcript_27700.known	chr18	+	1704	5	FSM	ENSMUSG00000025421.16	ENSMUST00000097521.12	1704	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	173.436587835439	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATGAAAATGCTATGTTTT	NA	False	NA	NA	False	NA	NA	NA	77031822	77049749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_77031882_77038808_77038920_77042673_77042883_77044534_77044620_77048509
transcript_27701.known	chr18	+	1503	4	FSM	ENSMUSG00000090000.3	ENSMUST00000136800.2	1503	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	763.929461548789	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATATTAAGCGTCTGATTT	NA	False	NA	8	True	AATAAA	-10	NA	77017740	77029301	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_77017913_77018319_77018456_77027263_77027366_77028208
transcript_27703.known	chr18	+	1402	3	FSM	ENSMUSG00000090000.3	ENSMUST00000026487.6	1402	3	0	0	0	0	multi-exon	FALSE	canonical	3	1641	junction_2	78	950	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCGTCTGATTTATGCCTT	NA	False	NA	15	True	AATAAA	-17	NA	77017712	77029308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_77017913_77027263_77027366_77028208
transcript_27705.known	chr18	+	335	2	FSM	ENSMUSG00000090000.3	ENSMUST00000128679.2	335	2	0	0	0	0	multi-exon	FALSE	canonical	3	1797	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGGTTCTCTTTGTGTGG	NA	False	NA	NA	False	NA	NA	NA	77017758	77027444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_77017913_77027263
transcript_27706.nnic	chr18	-	1938	16	NNC	ENSMUSG00000025420.14	novel	1942	16	NA	NA	14048	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	8.22732574345327	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTGTTTCTCCTCATT	NA	False	NA	NA	False	TATAAA	-14	NA	77120891	77064844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_77065222_77066125_77066229_77067694_77067858_77082089_77082201_77085294_77085387_77090126_77090246_77090432_77090497_77092418_77092518_77095203_77095282_77095480_77095580_77098642_77098742_77099679_77099801_77103697_77103741_77105156_77105324_77106880_77106952_77120759
transcript_27708.nnic	chr18	-	1684	13	NNC	ENSMUSG00000025420.14	novel	1674	14	NA	NA	13996	-858	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	7.91754381105656	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCTTTGTCAGACTTTA	NA	False	NA	NA	False	NA	NA	NA	77120943	77081752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_77082201_77085294_77085387_77090126_77090246_77090432_77090497_77092418_77092518_77095203_77095282_77095480_77095580_77098642_77098742_77099679_77099801_77103697_77103741_77105156_77105324_77106880_77106952_77120759
transcript_27710.nnic	chr18	-	1591	6	NNC	ENSMUSG00000025420.14	novel	1515	6	NA	NA	13996	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	3.26190128606002	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTATTTCTGCTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	77120943	77097736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_77098742_77099679_77099801_77103697_77103741_77105156_77105324_77106880_77106952_77120759
transcript_27711.nnic	chr18	-	1122	6	NNC	ENSMUSG00000025420.14	novel	1674	14	NA	NA	13996	23	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	3.26190128606002	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACTGAGCCATGGTCCTA	NA	False	NA	NA	False	GATAAA	-19	NA	77120943	77098205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_-_77098742_77099679_77099801_77103697_77103741_77105156_77105324_77106880_77106952_77120759
transcript_27713.nnic	chr18	+	2411	15	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26827	0	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	341.46650267483	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTTCTAATTAAAGATG	6258	False	NA	13	True	AATAAA	-26	NA	77126076	77240813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_77126175_77126529_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
transcript_27723.nnic	chr18	+	1969	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26827	-136	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	376.676732685662	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATTGGAAAAGAGCTTGA	6258	False	NA	7	True	AATAAA	-17	NA	77126076	77234497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_77126175_77126529_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
transcript_27730.nnic	chr18	+	2670	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26731	0	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	216.509206932155	89	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTTTCTAATTAAAGATG	6354	False	NA	13	True	AATAAA	-26	NA	77126172	77240813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
transcript_27731.nnic	chr18	+	2768	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26731	98	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	216.509206932155	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATACTTTCTATGGAGAT	6354	False	NA	111	True	AATAGA	-20	NA	77126172	77240911	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
transcript_27732.nnic	chr18	+	2988	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26731	99	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	216.509206932155	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTATGTTTAAGAATACT	6354	False	NA	17	True	AGTAAA	-25	NA	77126172	77241131	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
transcript_27733.nnic	chr18	+	2981	14	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26657	166	at_least_one_novel_splicesite	FALSE	canonical	3	706	junction_12	216.509206932155	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTGTAGAATTTTCTG	6428	False	NA	44	True	TATAAA	-27	NA	77126246	77241198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
transcript_27740.known	chr18	+	3060	14	FSM	ENSMUSG00000025423.17	ENSMUST00000114777.10	3060	14	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_1	299.077338556217	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATCATAATTCTCATCAAT	7899	False	NA	NA	False	CATAAA	-17	NA	77152903	77241496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_77153116_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77237756_77237795_77240310
transcript_27742.nnic	chr18	+	2228	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26731	-136	at_least_one_novel_splicesite	FALSE	canonical	3	417	junction_12	260.606810582959	109	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATTGGAAAAGAGCTTGA	6354	False	NA	7	True	AATAAA	-17	NA	77126172	77234497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
transcript_27743.nnic	chr18	+	2364	13	NNC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-26731	0	at_least_one_novel_splicesite	FALSE	canonical	3	417	junction_12	260.606810582959	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATGTAGCATTTATGCT	6354	False	NA	19	True	ATTAAA	-31	NA	77126172	77234633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_77126678_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
transcript_27749.nic	chr18	+	1950	13	NIC	ENSMUSG00000025423.17	novel	3060	14	NA	NA	-15	-136	combination_of_known_junctions	FALSE	canonical	3	372	junction_1	338.465163150754	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGATTGGAAAAGAGCTTGA	7884	False	NA	7	True	AATAAA	-17	NA	77152888	77234497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_77153116_77184944_77185420_77193500_77193586_77207607_77207659_77207751_77207843_77214552_77214688_77216651_77216758_77217745_77217820_77220786_77220948_77221629_77221764_77223475_77223648_77232698_77232839_77234398
transcript_27758.known	chr18	-	1606	5	FSM	ENSMUSG00000047466.11	ENSMUST00000237203.2	1606	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	65.6291665343999	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAACTTAGCACAGAGA	NA	False	NA	-7	True	ATTAAA	-15	NA	77802186	77722682	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_77723025_77730763_77730891_77740824_77740993_77761595_77762381_77802002
transcript_27760.known	chr18	-	1269	2	FSM	ENSMUSG00000097666.3	ENSMUST00000180530.3	1269	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACTGGATTCTTCTTTAT	NA	False	NA	NA	False	NA	NA	NA	77820439	77817195	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_77818179_77820153
transcript_27778.known	chr18	+	2471	12	FSM	ENSMUSG00000025428.16	ENSMUST00000026495.15	2471	12	0	0	0	0	multi-exon	FALSE	canonical	3	5078	junction_4	224.265707226978	3971	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTTGGTTGATGAGTC	NA	False	NA	20	True	ATTAAA	-22	NA	77861428	77870569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_77861811_77863476_77863556_77865218_77865389_77866161_77866336_77866431_77866599_77866778_77866928_77867526_77867679_77867778_77868004_77868684_77868793_77868911_77869057_77869498_77869650_77870000
transcript_278.known	chr1	+	264	4	FSM	ENSMUSG00000097893.9	ENSMUST00000209020.2	264	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0.942809041582063	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGGGACTCCTGAGGAG	NA	False	NA	NA	False	NA	NA	NA	9818850	9840976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_9818871_9820582_9820631_9822673_9822790_9840896
transcript_27821.known	chr18	-	1003	9	FSM	ENSMUSG00000041840.9	ENSMUST00000048192.9	1003	9	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_6	88.5180066427165	652	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTCTTGTTATCTGTTGCT	NA	False	NA	-1	True	AATACA	-19	NA	77855480	77845267	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77855419
transcript_27840.known	chr18	-	6882	3	FSM	ENSMUSG00000041840.9	ENSMUST00000236575.2	6882	3	0	0	0	0	multi-exon	FALSE	canonical	3	1297	junction_2	61	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTCTTGTTATCTGTTGC	NA	False	NA	-2	True	AATACA	-18	NA	77855486	77845268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_77851909_77854563_77854739_77855419
transcript_27841.known	chr18	-	1226	10	FSM	ENSMUSG00000041840.9	ENSMUST00000236234.2	1226	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	557.188732792236	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTTATCTGTTGCTC	NA	False	NA	0	True	AATACA	-20	NA	77861586	77845266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_77845454_77846169_77846218_77847136_77847209_77848167_77848234_77848606_77848731_77849681_77849817_77851772_77851909_77854563_77854739_77856043_77856198_77861457
transcript_27848.nic	chr18	+	3010	15	NIC	ENSMUSG00000025429.10	novel	1056	14	NA	NA	2	878	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	7.97860659923186	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAATTTGTATTCTTGTGT	2212	False	NA	NA	False	AATAAA	-20	NA	77877615	77971457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_77877687_77922824_77922926_77934078_77934157_77935803_77935839_77942497_77942605_77949546_77949610_77958046_77958146_77959267_77959314_77959468_77959549_77961060_77961160_77961972_77962070_77963537_77963620_77965294_77965330_77967055_77967117_77969501
transcript_27856.known	chr18	-	1377	6	FSM	ENSMUSG00000024570.8	ENSMUST00000025462.7	1377	6	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_3	30.0026665481587	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATTTTGTGTATACGCAC	NA	False	NA	-3	True	AATAAA	-20	NA	80243873	80235479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_80236098_80236446_80236515_80238233_80238319_80240464_80240578_80240878_80241099_80243600
transcript_27860.nnic	chr18	+	810	5	NIC	ENSMUSG00000057130.13	novel	4078	4	NA	NA	13	193	combination_of_known_splicesites	FALSE	canonical	3	288	junction_3	1074.60606154069	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGCTGTGCTTACTGCG	NA	False	NA	13	True	AATAAA	-21	NA	80250022	80265746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr18_+_80250117_80250368_80250559_80253276_80253346_80261918_80262023_80265393
transcript_27864.known	chr18	+	1683	4	FSM	ENSMUSG00000024571.16	ENSMUST00000125127.8	1683	4	0	0	0	0	multi-exon	FALSE	canonical	3	1096	junction_3	900.996608699993	1118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACACGTTTGTTGTGGG	NA	False	NA	NA	False	AATAAA	-12	NA	80250012	80255947	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_80250117_80250368_80250559_80253276_80253346_80254627
transcript_27866.known	chr18	+	4078	4	FSM	ENSMUSG00000057130.13	ENSMUST00000145963.9	4078	4	0	0	0	0	multi-exon	FALSE	canonical	3	2407	junction_2	310.116465577406	1432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTGGTCATGATGTTTT	NA	False	NA	7	True	NA	NA	NA	80250009	80269070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_80250117_80250368_80250559_80261918_80262023_80265393
transcript_27868.known	chr18	+	1650	4	FSM	ENSMUSG00000024571.16	ENSMUST00000025463.14	1650	4	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	503.796475661441	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAAAAGGAGTACACGTT	NA	False	NA	NA	False	AATAAA	-3	NA	80250081	80255938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_80250162_80250368_80250559_80253276_80253346_80254627
transcript_27871.known	chr18	+	1755	4	FSM	ENSMUSG00000024571.16	ENSMUST00000127234.8	1755	4	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	451.424658411813	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTGTGGGAATTCATTG	NA	False	NA	NA	False	AATAAA	-21	NA	80250109	80255956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_80250277_80250368_80250559_80253276_80253346_80254627
transcript_27872.known	chr18	+	517	4	FSM	ENSMUSG00000057130.13	ENSMUST00000025464.8	517	4	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	1036.43309265748	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGCACTGGCAACAACAACA	NA	False	NA	NA	False	NA	NA	NA	80250077	80265417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_80250277_80250368_80250559_80261918_80262023_80265393
transcript_27877.known	chr18	+	968	3	FSM	ENSMUSG00000024571.16	ENSMUST00000145116.8	968	3	0	0	0	0	multi-exon	FALSE	canonical	3	1244	junction_2	916.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTCCTGTACGAGACT	NA	False	NA	NA	False	TTTAAA	-12	NA	80250044	80253982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_80250117_80250368_80250559_80253276
transcript_27881.known	chr18	+	419	3	FSM	ENSMUSG00000057130.13	ENSMUST00000126360.2	419	3	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	1149	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGGGAGAAGTCAGTTGT	NA	False	NA	NA	False	NA	NA	NA	80250108	80262094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_80250162_80250368_80250559_80261918
transcript_27883.known	chr18	-	1104	4	FSM	ENSMUSG00000078963.4	ENSMUST00000237192.2	1104	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	16.9901932498329	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAACCTTATGTGTATG	NA	False	NA	NA	False	AATACA	-14	NA	80280048	80272972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_80273777_80276629_80276725_80278663_80278731_80279910
transcript_27888.known	chr18	+	1989	6	FSM	ENSMUSG00000034006.18	ENSMUST00000091798.10	1989	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	14.1279864099595	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGGTGTAAGTAAGTCAG	NA	False	NA	14	True	AATAAA	-14	NA	80299520	80335939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_80299619_80299996_80300334_80306634_80306769_80315676_80315731_80326490_80326708_80334790
transcript_27889.known	chr18	+	1864	5	FSM	ENSMUSG00000034006.18	ENSMUST00000129043.8	1864	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	11.0989864402116	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGCTTCATGTGGTGTAAG	NA	False	NA	6	True	AATAAA	-39	NA	80299498	80335931	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_80299534_80299996_80300334_80306634_80306769_80326490_80326708_80334790
transcript_2789.known	chr1	+	2556	4	FSM	ENSMUSG00000053332.14	ENSMUST00000161229.8	2556	4	0	0	0	0	multi-exon	FALSE	canonical	3	4541	junction_3	423.601489872524	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTGCATTTTGT	NA	False	NA	22	True	ATTAAA	-18	NA	160862735	160866109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160865118_160865564_160865608_160865794_160865843_160866026
transcript_27890.known	chr18	+	1911	5	FSM	ENSMUSG00000034006.18	ENSMUST00000070135.8	1911	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	7.26291952316697	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACATGCTTCATGTGGTG	NA	False	NA	2	True	AATAAA	-35	NA	80299532	80335927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_80299619_80299996_80300334_80306634_80306769_80326490_80326708_80334790
transcript_27891.nnic	chr18	-	1030	4	Intergenic	novelGene_10	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAGGTAGCTAGGAGTAG	NA	False	NA	NA	False	NA	NA	NA	82266504	82257611	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Intergenic_chr18_-_82257734_82259456_82259616_82265077_82265124_82265801
transcript_27892.known	chr18	+	4797	4	FSM	ENSMUSG00000041607.18	ENSMUST00000091789.11	4797	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4.02768199119819	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGACTTTTTAAGTTGT	NA	False	NA	35	True	ATTAAA	-35	NA	82493270	82576828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_82493520_82518851_82518928_82540174_82540263_82572444
transcript_27894.nnic	chr18	-	421	3	Antisense	novelGene_ENSMUSG00000097738.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	20	junction_2	4.5	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTTCCTATATTTTC	NA	False	NA	-14	True	AATAAA	-17	NA	82884010	82873436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr18_-_82873610_82875076_82875202_82883887
transcript_27898.known	chr18	+	3430	2	FSM	ENSMUSG00000049090.4	ENSMUST00000060223.4	3430	2	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACACTTCTTTCTGTCCC	4254	False	NA	NA	False	NA	NA	NA	84106187	84115653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_84106499_84112534
transcript_27899.known	chr18	-	7909	9	FSM	ENSMUSG00000048410.18	ENSMUST00000125763.3	7909	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	5.699506557589	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGGTGGTGTACTAAGTGC	NA	False	NA	NA	False	AATAAA	-20	NA	84607629	84225825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_84228207_84333930_84334110_84361070_84361192_84369024_84369109_84372649_84372817_84450484_84450560_84570994_84571110_84576451_84581172_84607562
transcript_27901.known	chr18	-	2124	12	FSM	ENSMUSG00000024644.18	ENSMUST00000025546.17	2124	12	0	0	0	0	multi-exon	FALSE	canonical	3	418	junction_11	64.2627612178223	810	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCGTGGTCTGACTTTCT	NA	False	NA	2	True	AATAAA	-25	NA	84703827	84685589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832_84696996_84699059_84699204_84699962_84700053_84703727
transcript_27906.known	chr18	-	2152	11	FSM	ENSMUSG00000024644.18	ENSMUST00000168419.3	2152	11	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_9	38.6638073655454	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTGCCGTGGTCTGACT	NA	False	NA	-2	True	AATAAA	-21	NA	84700184	84685593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_84686226_84686662_84686811_84687055_84687198_84687921_84688087_84688877_84689039_84690198_84690284_84693101_84693303_84695443_84695533_84696832_84696996_84699059_84699204_84699962
transcript_2791.known	chr1	-	3619	17	FSM	ENSMUSG00000026709.11	ENSMUST00000035430.4	3619	17	0	0	0	0	multi-exon	TRUE	canonical	3	321	junction_5	41.9044672439586	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCCCTGCATGTCCTGAAC	NA	False	NA	NA	False	NA	NA	NA	160898228	160868170	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
transcript_27910.known	chr18	+	833	5	FSM	ENSMUSG00000024646.15	ENSMUST00000160180.9	833	5	0	0	0	0	multi-exon	FALSE	canonical	3	946	junction_4	54.2425110038243	844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTCTGTCTGTTTGGTGT	NA	False	NA	19	True	AATATA	-24	NA	84869462	84897996	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_84869733_84889629_84889759_84891264_84891295_84895951_84895987_84897627
transcript_27911.known	chr18	+	676	5	FSM	ENSMUSG00000024646.15	ENSMUST00000163083.2	676	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	445.209150287817	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACCATATGTGTCTGTCT	NA	False	NA	10	True	AATATA	-15	NA	84870003	84897987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_84870126_84889629_84889759_84891264_84891295_84895951_84895987_84897627
transcript_27912.nnic	chr18	+	2103	11	NNC	ENSMUSG00000034391.13	novel	1910	10	NA	NA	-620	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	245.728081423349	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGGTGTCTTATTT	180	False	NA	26	True	AATAAA	-15	NA	84952286	84999598	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr18_+_84952762_84953188_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
transcript_27918.known	chr18	+	1437	10	FSM	ENSMUSG00000034391.13	ENSMUST00000037718.10	1437	10	0	0	0	0	multi-exon	FALSE	canonical	3	723	junction_3	71.0602248487546	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGAGTTAGCAGTAGGG	1176	False	NA	-12	True	NA	NA	NA	84953282	84999501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_84953306_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
transcript_2792.nic	chr1	-	2170	17	NIC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_16	96.678510409501	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTATTTAGAGTCTTCC	NA	False	NA	-16	True	AATGAA	-26	NA	160898233	160869074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160898112
transcript_27920.known	chr18	+	1557	10	FSM	ENSMUSG00000034391.13	ENSMUST00000223789.3	1557	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	268.357187805569	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGAGTTAGCAGTAGGG	NA	False	NA	-12	True	NA	NA	NA	84970240	84999501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_84970384_84975444_84975556_84976396_84976502_84977193_84977437_84978134_84978345_84980718_84980846_84982233_84982317_84983555_84983711_84995491_84995617_84999246
transcript_27922.known	chr18	-	2418	6	FSM	ENSMUSG00000024645.6	ENSMUST00000025547.4	2418	6	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_4	6.15142259969188	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	84969649	84964315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_84965871_84965958_84966065_84966147_84966222_84967318_84967417_84967514_84967578_84969127
transcript_27925.known	chr18	-	1236	3	FSM	ENSMUSG00000024645.6	ENSMUST00000235548.2	1236	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	30.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCATTTTTATTTACTT	NA	False	NA	NA	False	AATAAA	-22	NA	84969638	84965404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_84965871_84967318_84967578_84969127
transcript_27926.known	chr18	+	1866	1	FSM	ENSMUSG00000069324.7	ENSMUST00000091776.7	1866	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	AATAAA	-22	NA	87774409	87776275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_87774400_87776300
transcript_27927.known	chr18	-	1004	4	FSM	ENSMUSG00000056153.16	ENSMUST00000145120.3	1004	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	77.821733611005	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCAGCCAGAGCCGCGCCC	NA	False	NA	NA	False	NA	NA	NA	88912434	88888373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_88889043_88905115_88905177_88905332_88905458_88912285
transcript_27928.known	chr18	-	2814	4	FSM	ENSMUSG00000056153.16	ENSMUST00000125362.8	2814	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_2	64.5652125115891	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGAAATTGTTGCCTTTT	NA	False	NA	-5	True	ATTAAA	-25	NA	88912476	88886618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_-_88889043_88905115_88905190_88905332_88905458_88912285
transcript_2793.nnic	chr1	-	2558	16	NIC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	2	15	junction_7	102.476143565222	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTATTTAGAGTCTTCC	NA	False	NA	-16	True	AATGAA	-26	NA	160898251	160869074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160877507_160877571_160878900_160879009_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
transcript_27930.known	chr18	+	4611	16	FSM	ENSMUSG00000024614.8	ENSMUST00000025515.7	4611	16	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_13	15.4033185457622	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTACCTTTAATATGTGT	4742	False	NA	25	True	AATAAA	-25	NA	90528277	90561391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653_90541754_90542404_90542483_90545999_90546067_90548183_90548283_90551106_90551165_90551344_90551399_90552505_90552563_90555198_90555329_90556622_90556692_90558062
transcript_27937.known	chr18	+	1776	11	FSM	ENSMUSG00000024614.8	ENSMUST00000236213.2	1776	11	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_10	65.2935678302235	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACAACTATTGTTACCACA	4790	False	NA	NA	False	AATAAA	-22	NA	90528325	90550032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_90528502_90529402_90529458_90532328_90532369_90535517_90535642_90537228_90537275_90539080_90539162_90541653_90541754_90542404_90542483_90545999_90546067_90548183_90548283_90549122
transcript_27939.known	chr18	+	2003	4	FSM	ENSMUSG00000110277.3	ENSMUST00000211710.2	2003	4	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_2	1.63299316185545	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATAAGTGTTGTCTTGGTC	NA	False	NA	3	True	NA	NA	NA	90597900	90610646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_90598024_90607079_90607207_90607397_90607459_90608954
transcript_27940.known	chr18	+	1929	3	FSM	ENSMUSG00000110277.3	ENSMUST00000209969.3	1929	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	46.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGTCTTGGTCATAGTA	NA	False	NA	9	True	NA	NA	NA	90597919	90610652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr18_+_90598024_90607079_90607207_90608954
transcript_27941.known	chr19	-	5569	15	FSM	ENSMUSG00000024831.15	ENSMUST00000025751.11	5569	15	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	8.84936294259626	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATAGCTGAGGAGTACTC	NA	False	NA	NA	False	NA	NA	NA	3333017	3309075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_3311636_3311974_3312145_3314810_3315666_3316335_3316460_3317241_3317337_3318297_3318417_3318659_3318843_3321525_3321701_3322887_3323036_3324355_3324557_3326755_3326920_3329532_3329631_3329806_3329997_3331418_3331589_3332700
transcript_27948.known	chr19	+	802	7	FSM	ENSMUSG00000024829.13	ENSMUST00000025743.7	802	7	0	0	0	0	multi-exon	FALSE	canonical	3	1715	junction_6	72.3058703625708	1030	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGACTTGCTGTTAAA	7371	False	NA	13	True	NA	NA	NA	3333059	3341201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_3333172_3334759_3334818_3335309_3335396_3336874_3337039_3337702_3337756_3338983_3339088_3340976
transcript_27952.known	chr19	+	678	2	FSM	ENSMUSG00000024829.13	ENSMUST00000155870.2	678	2	0	0	0	0	multi-exon	FALSE	canonical	3	1903	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCTGAGCTCACCACCCTG	7371	False	NA	NA	False	NA	NA	NA	3333059	3335325	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_3333172_3334759
transcript_27953.known	chr19	+	4317	19	FSM	ENSMUSG00000024900.6	ENSMUST00000025835.6	4317	19	0	0	0	0	multi-exon	TRUE	canonical	3	230	junction_1	37.3718386086055	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCATCTGTCCCTGTCTCC	NA	False	NA	18	True	AATAAA	-20	NA	3373284	3435733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_3373375_3399188_3399343_3402484_3402625_3406316_3406489_3408175_3408278_3412084_3412223_3414477_3414556_3415674_3415783_3416329_3416418_3418854_3419051_3420706_3420896_3421571_3421678_3425092_3425210_3426410_3426576_3428367_3428503_3430016_3430170_3431609_3431724_3431931_3432025_3433754
transcript_27958.known	chr19	-	4841	23	FSM	ENSMUSG00000024908.16	ENSMUST00000025846.16	4841	23	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_9	88.0225482945391	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCGTGAGCCTTTTTG	NA	False	NA	NA	False	AATAAA	-24	NA	3625720	3504927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_3507052_3509360_3509481_3514544_3514696_3516492_3516600_3517140_3517295_3519640_3519763_3520970_3521102_3521978_3522034_3523768_3523867_3534830_3534917_3536975_3537092_3540773_3540839_3542365_3542516_3543885_3544039_3546521_3546652_3557241_3557356_3561928_3562042_3564653_3564720_3568244_3568383_3571733_3571921_3576701_3576935_3594107_3594256_3625640
transcript_27959.known	chr19	-	571	3	FSM	ENSMUSG00000118249.2	ENSMUST00000236650.2	571	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGACTTTGGTGGTATC	NA	False	NA	NA	False	NA	NA	NA	3758176	3739685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_3740001_3756645_3756786_3758060
transcript_2796.nic	chr1	-	2675	16	NIC	ENSMUSG00000026709.11	novel	3619	17	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	101.925768195399	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTATTTAGAGTCTTCC	NA	False	NA	-16	True	AATGAA	-26	NA	160898251	160869074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_160869501_160871182_160871259_160872528_160872640_160872827_160873047_160874346_160874500_160878900_160879009_160881510_160881691_160884030_160884101_160885016_160885124_160887614_160887662_160888305_160888430_160890351_160890448_160890816_160890919_160892794_160892862_160896649_160896750_160897562
transcript_27961.known	chr19	+	2193	4	FSM	ENSMUSG00000035372.3	ENSMUST00000237955.2	2193	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	122.806984962402	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTCCAGCTTGTGTGGG	NA	False	NA	3	True	ATTAAA	-15	NA	3758370	3767873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_3758437_3764046_3764626_3765637_3765803_3766490
transcript_27962.known	chr19	+	1882	4	FSM	ENSMUSG00000035372.3	ENSMUST00000039048.2	1882	4	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	53.9897109539298	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGTGTGGGTCTGTGTG	NA	False	NA	11	True	ATTAAA	-23	NA	3758332	3767881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_3758437_3764403_3764626_3765637_3765803_3766490
transcript_27963.known	chr19	+	772	4	FSM	ENSMUSG00000035372.3	ENSMUST00000237320.2	772	4	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	87.4541149530554	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAACTCTGGCTGTACCTA	NA	False	NA	NA	False	NA	NA	NA	3758292	3766734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_3758437_3764406_3764626_3765637_3765803_3766490
transcript_27964.known	chr19	+	1643	3	FSM	ENSMUSG00000035372.3	ENSMUST00000235295.2	1643	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	146.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGCTTGTGTGGGTCTGT	NA	False	NA	8	True	ATTAAA	-20	NA	3758346	3767878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_3758437_3765637_3765803_3766490
transcript_27967.known	chr19	+	2319	12	FSM	ENSMUSG00000024843.16	ENSMUST00000025760.13	2319	12	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	51.157187679149	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTCTCAGACTGTTACCC	6023	False	NA	1	True	AATAAA	-12	NA	3902075	3944364	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_3902414_3914647_3914760_3925734_3925789_3934471_3934586_3935859_3935994_3936361_3936467_3937388_3937448_3939022_3939111_3939879_3939989_3942106_3942214_3942709_3942792_3943347
transcript_27968.known	chr19	+	1721	10	FSM	ENSMUSG00000045098.20	ENSMUST00000237440.2	1721	10	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	94.5832966226067	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTTAGAATTGACCAAA	NA	False	NA	4	True	AATAAA	-14	NA	3818145	3855463	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_3818341_3832219_3832280_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916
transcript_27969.known	chr19	+	2975	10	FSM	ENSMUSG00000045098.20	ENSMUST00000113970.8	2975	10	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_9	36.6093828625975	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTCTTGAGTCTGG	NA	False	NA	56	True	AATAAA	-15	NA	3818032	3858835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916_3855054_3857224
transcript_27970.known	chr19	+	1283	9	FSM	ENSMUSG00000045098.20	ENSMUST00000005518.16	1283	9	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_4	20.1242235875077	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATCAGACTCTCTGCCTA	NA	False	NA	NA	False	NA	NA	NA	3818117	3855057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_3818341_3836388_3836628_3843067_3843216_3846639_3846709_3852074_3852241_3852787_3852898_3854394_3854562_3854813_3854834_3854916
transcript_27973.known	chr19	-	2688	20	FSM	ENSMUSG00000001750.17	ENSMUST00000001801.11	2688	20	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_12	8.58007741992203	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTCTCTGTCCTCTCTG	NA	False	NA	0	True	AATAAA	-20	NA	3957133	3946049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_3946193_3946269_3946448_3946603_3946722_3946794_3946903_3947037_3947170_3947467_3947682_3947757_3947877_3948547_3948639_3948717_3948876_3948979_3949120_3951890_3952036_3952343_3952557_3952630_3952725_3952881_3952965_3953045_3953173_3953339_3953429_3953508_3953730_3954216_3954296_3954584_3954706_3957018
transcript_27980.known	chr19	-	1005	7	FSM	ENSMUSG00000059734.8	ENSMUST00000236801.2	1005	7	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_6	705.446824517782	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGTGTTGTTCCATTT	NA	False	NA	-1	True	CATAAA	-22	NA	3962488	3958862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962202
transcript_27981.known	chr19	-	977	7	FSM	ENSMUSG00000059734.8	ENSMUST00000235847.2	977	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	709.089557108268	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCTACCTGTTGTGTTGT	NA	False	NA	-8	True	CATAAA	-15	NA	3962734	3958869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962469
transcript_27983.known	chr19	-	780	7	FSM	ENSMUSG00000059734.8	ENSMUST00000237341.2	780	7	0	0	0	0	multi-exon	FALSE	canonical	3	1174	junction_6	307.096076171611	1094	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACCTGTTGTGTTGTTCC	NA	False	NA	-5	True	CATAAA	-18	NA	3962774	3958866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_3959075_3959152_3959282_3960897_3961071_3961160_3961257_3961565_3961617_3961688_3961747_3962709
transcript_27990.known	chr19	-	1924	10	FSM	ENSMUSG00000024885.10	ENSMUST00000051803.8	1924	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_9	3.58322566591047	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACAGGTGTCTTGTCTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	3979808	3963490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_3964085_3965293_3965394_3968041_3968209_3968602_3968990_3970796_3970879_3971182_3971269_3971472_3971594_3971696_3971808_3973738_3973902_3979695
transcript_27991.known	chr19	+	2266	11	FSM	ENSMUSG00000036908.18	ENSMUST00000162708.7	2266	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_5	6.90579466824782	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGTGTAGGTTGTGTTCT	5185	False	NA	NA	False	AATAAA	-20	NA	3985185	3999340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_3985353_3985761_3985904_3986268_3986423_3991519_3991682_3991884_3992018_3992348_3992443_3992693_3992819_3993528_3993712_3994022_3994297_3997006_3997126_3998627
transcript_27992.known	chr19	+	2142	10	FSM	ENSMUSG00000075296.6	ENSMUST00000143380.3	2142	10	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_3	1.85259244450367	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAATTCAGGGAGAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	4022327	4031646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4022614_4027498_4027662_4028060_4028172_4028413_4028535_4028652_4028739_4028850_4028933_4029229_4029617_4030005_4030173_4030691_4030792_4031007
transcript_27993.known	chr19	+	1284	8	FSM	ENSMUSG00000024866.11	ENSMUST00000236510.2	1284	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	10.3332236114429	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGACAGTTCTTGTTCTT	NA	False	NA	3	True	TATAAA	-17	NA	4036569	4040005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4036612_4036822_4036952_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038716_4039652
transcript_27994.known	chr19	+	1142	7	FSM	ENSMUSG00000024866.11	ENSMUST00000235612.2	1142	7	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	13.4752860204648	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGACAGTTCTTGTTCTT	NA	False	NA	3	True	TATAAA	-17	NA	4036582	4040005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4036612_4037050_4037306_4037730_4037924_4038137_4038232_4038397_4038506_4038605_4038716_4039652
transcript_27995.known	chr19	+	787	4	FSM	ENSMUSG00000110949.2	ENSMUST00000025802.10	787	4	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	10.4243305140746	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGGCATCTTCCGTGT	3513	False	NA	9	True	ATTAAA	-18	NA	4050579	4052103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4050848_4051195_4051329_4051627_4051706_4051795
transcript_27996.nnic	chr19	+	619	3	NIC	ENSMUSG00000110949.2	novel	787	4	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	39.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGGCATCTTCCGTGT	3548	False	NA	9	True	ATTAAA	-18	NA	4050614	4052103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_4050848_4051627_4051706_4051795
transcript_27997.known	chr19	+	1082	3	FSM	ENSMUSG00000110949.2	ENSMUST00000122924.2	1082	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	4	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTCTGGCATCTTCCGT	3564	False	NA	7	True	ATTAAA	-16	NA	4050630	4052101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4051329_4051627_4051706_4051795
transcript_28.known	ERCC-00078	+	977	1	FSM	ERCC-00078A	DQ883673	977	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00078_+_0_1000
transcript_280.known	chr1	+	3680	17	FSM	ENSMUSG00000025915.15	ENSMUST00000171265.8	3680	17	0	0	0	0	multi-exon	TRUE	canonical	3	97	junction_4	18.6899036915657	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGTTGGACTATTTCATG	9814	False	NA	NA	False	ATTAAA	-14	NA	9918496	9971068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_9918611_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
transcript_2800.known	chr1	+	1914	6	FSM	ENSMUSG00000026708.17	ENSMUST00000192850.6	1914	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	49.9095181303126	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGTTTCCAATTGAAG	NA	False	NA	6	True	AATAAA	-12	NA	160898461	160913894	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160898927_160902326_160902501_160905798_160906051_160907437_160907581_160910477_160911021_160913557
transcript_28002.known	chr19	-	1661	10	FSM	ENSMUSG00000037916.15	ENSMUST00000042497.14	1661	10	0	0	0	0	multi-exon	FALSE	canonical	3	1250	junction_6	107.070877644232	1639	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAACTTTGCTTTTC	6426	False	NA	3	True	AATAAA	-30	NA	4062806	4057496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4057666_4057769_4057916_4058047_4058130_4058342_4058510_4058593_4058807_4059343_4059534_4059825_4060010_4061101_4061273_4061345_4061429_4062550
transcript_2801.known	chr1	+	1756	6	FSM	ENSMUSG00000026708.17	ENSMUST00000192150.6	1756	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	51.3754805330325	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGTGTTTCCAATTGAAG	NA	False	NA	6	True	AATAAA	-12	NA	160898519	160913894	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160898927_160902326_160902501_160905898_160906051_160907437_160907581_160910477_160911021_160913557
transcript_28012.known	chr19	-	821	7	FSM	ENSMUSG00000060803.7	ENSMUST00000169613.4	821	7	0	0	0	0	multi-exon	FALSE	canonical	3	1999	junction_6	828.939215034626	1136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCTGTT	NA	False	NA	NA	False	AATAAA	-16	NA	4087985	4085406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4085662_4085823_4085932_4086687_4086792_4087103_4087192_4087289_4087397_4087584_4087621_4087862
transcript_28015.known	chr19	-	423	2	FSM	ENSMUSG00000060803.7	ENSMUST00000236211.2	423	2	0	0	0	0	multi-exon	FALSE	canonical	3	4470	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCTG	NA	False	NA	NA	False	AATAAA	-14	NA	4085993	4085408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4085662_4085823
transcript_28016.nic	chr19	-	945	8	NIC	ENSMUSG00000038155.12	novel	797	7	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_6	1378.94109033426	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCCGTT	NA	False	NA	NA	False	AATAAA	-16	NA	4096065	4090284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092566_4092672_4095923
transcript_2802.known	chr1	+	1910	5	FSM	ENSMUSG00000026708.17	ENSMUST00000111620.10	1910	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_2	18.1710621593786	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAAGTTATTTATTCTGTT	NA	False	NA	20	True	AATAAA	-26	NA	160898336	160913908	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160898927_160902326_160902501_160905798_160906051_160910477_160911021_160913557
transcript_28020.known	chr19	-	797	7	FSM	ENSMUSG00000038155.12	ENSMUST00000042700.12	797	7	0	0	0	0	multi-exon	FALSE	canonical	3	1174	junction_6	961.706469424706	1571	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTGTCTTTGGTGCCGTT	NA	False	NA	NA	False	AATAAA	-16	NA	4092263	4090284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4090540_4090707_4090816_4090981_4091086_4091397_4091486_4091583_4091691_4091902_4091939_4092164
transcript_28028.known	chr19	-	429	2	FSM	ENSMUSG00000038155.12	ENSMUST00000237565.2	429	2	0	0	0	0	multi-exon	FALSE	canonical	3	3855	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGGTGTCTTTGGTGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	4090883	4090286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4090540_4090707
transcript_28030.known	chr19	-	708	7	FSM	ENSMUSG00000058216.14	ENSMUST00000189808.7	708	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	28.8236978119664	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTGCAGGGCTTGTCCT	9073	False	NA	NA	False	NA	NA	NA	4109446	4107476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734_4108842_4109258_4109295_4109423
transcript_28032.nnic	chr19	-	785	6	NNC	ENSMUSG00000058216.14	novel	708	7	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	27.9828518918283	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTGCAGGGCTTGTCCT	9047	False	NA	NA	False	NA	NA	NA	4109472	4107476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734_4108842_4109336
transcript_28033.nic	chr19	-	692	6	NIC	ENSMUSG00000058216.14	novel	708	7	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_5	25.7029181222678	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTGCAGGGCTTGTCCT	9053	False	NA	NA	False	NA	NA	NA	4109466	4107476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734_4108842_4109423
transcript_28034.nic	chr19	-	1102	5	ISM	ENSMUSG00000058216.14	ENSMUST00000076451.7	685	6	1	-1	1	0	intron_retention	FALSE	canonical	3	57	junction_3	9.36416040016402	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTGCAGGGCTTGTCCT	9225	False	NA	NA	False	NA	NA	NA	4109294	4107476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_-_4107719_4107887_4107996_4108085_4108190_4108528_4108617_4108734
transcript_28036.known	chr19	+	843	4	FSM	ENSMUSG00000024856.11	ENSMUST00000174799.2	843	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	272.140078309356	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTCTCAGCCTTTCTGTG	7096	False	NA	27	True	AATAAA	-16	NA	4147401	4149010	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4147508_4147816_4147908_4148004_4148138_4148497
transcript_28037.known	chr19	+	1080	4	FSM	ENSMUSG00000024856.11	ENSMUST00000025779.11	1080	4	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_3	36.1754981536767	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCCTTTCTGTGTGTGGTT	6876	False	NA	34	True	AATAAA	-23	NA	4147181	4149017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4147508_4147816_4147918_4148004_4148138_4148497
transcript_28039.known	chr19	+	1089	4	FSM	ENSMUSG00000024856.11	ENSMUST00000172914.2	1089	4	0	0	0	0	multi-exon	TRUE	canonical	3	90	junction_1	272.960721635102	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTTTCTGTGTGTGGTTCC	7095	False	NA	36	True	AATAAA	-25	NA	4147400	4149019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4147734_4147816_4147918_4148004_4148138_4148497
transcript_2804.known	chr1	+	1997	5	FSM	ENSMUSG00000026708.17	ENSMUST00000143486.7	1997	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	42.0200844834943	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGTCTTGTCTTTGTTG	NA	False	NA	12	True	NA	NA	NA	160898535	160914294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160898927_160902326_160902501_160905898_160906051_160910477_160911021_160913557
transcript_28040.known	chr19	+	669	3	FSM	ENSMUSG00000024856.11	ENSMUST00000174514.2	669	3	0	0	0	0	multi-exon	FALSE	canonical	3	655	junction_1	26.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTACTTCCCCATCCTC	7095	False	NA	NA	False	NA	NA	NA	4147400	4148465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4147508_4147816_4147918_4148004
transcript_28043.known	chr19	-	1378	7	FSM	ENSMUSG00000024847.16	ENSMUST00000117831.8	1378	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	105.801307490346	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATCTTGAAGGCTGGTCA	9616	False	NA	-3	True	TATAAA	-35	NA	4175858	4164445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4164797_4165080_4165223_4165319_4165497_4165981_4166171_4168086_4168267_4171335_4171546_4175729
transcript_28045.known	chr19	-	1261	6	FSM	ENSMUSG00000024847.16	ENSMUST00000025767.14	1261	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_5	15.3310143173894	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCTTTGCAGAACTAATC	3902	False	NA	-21	True	TATAAA	-17	NA	4171575	4164463	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4164797_4165080_4165223_4165319_4165497_4165981_4166171_4168086_4168267_4171335
transcript_28049.known	chr19	+	938	7	FSM	ENSMUSG00000024845.20	ENSMUST00000140267.10	938	7	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_2	70.8411760364142	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	4370	False	NA	NA	False	AATAAA	-16	NA	4175958	4181726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
transcript_28051.known	chr19	+	1488	7	FSM	ENSMUSG00000024845.20	ENSMUST00000139987.10	1488	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	239.625691907655	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAATCTGAGCTCACAG	4371	False	NA	NA	False	AATAAA	-28	NA	4175959	4182304	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4176200_4177055_4177121_4177575_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
transcript_28052.known	chr19	+	937	7	FSM	ENSMUSG00000024845.20	ENSMUST00000148807.11	937	7	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_2	194.337907321815	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTGCACTTTCCTGGGCC	4390	False	NA	NA	False	AATAAA	-24	NA	4175978	4181734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4176200_4177055_4177132_4177548_4177639_4177758_4177836_4181029_4181075_4181227_4181282_4181360
transcript_28056.known	chr19	+	1472	6	FSM	ENSMUSG00000024845.20	ENSMUST00000150627.11	1472	6	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_4	186.716255318063	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAATCTGAGCTCACAGCA	4371	False	NA	NA	False	AATAAA	-30	NA	4175959	4182306	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4176200_4177055_4177121_4177548_4177639_4177758_4177836_4181227_4181282_4181360
transcript_28057.known	chr19	+	1615	6	FSM	ENSMUSG00000024845.20	ENSMUST00000130619.11	1615	6	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_2	76.3952878127964	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAACCGAGAATCTTT	4371	False	NA	NA	False	AATAAA	-8	NA	4175959	4182284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4176200_4177055_4177121_4177548_4177836_4181029_4181075_4181227_4181282_4181360
transcript_28061.known	chr19	+	874	6	FSM	ENSMUSG00000024845.20	ENSMUST00000140405.10	874	6	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_2	248.896283620306	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGGACAGTTGCACTTT	4400	False	NA	NA	False	AATAAA	-16	NA	4175988	4181726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4176200_4177055_4177132_4177548_4177639_4177758_4177836_4181227_4181282_4181360
transcript_28063.known	chr19	+	1012	5	FSM	ENSMUSG00000024845.20	ENSMUST00000139718.10	1012	5	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_3	207.505421615918	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACAAGGACAGTTGCACTT	4370	False	NA	NA	False	AATAAA	-15	NA	4175958	4181725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4176200_4177055_4177121_4177548_4177836_4181227_4181282_4181360
transcript_28069.known	chr19	-	4586	15	FSM	ENSMUSG00000024830.18	ENSMUST00000025749.15	4586	15	0	0	0	0	multi-exon	FALSE	canonical	2	38	junction_6	17.8245416691225	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCTCTGCTGCTTTTTCTGG	2749	False	NA	NA	False	AATATA	-7	NA	4213353	4203989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208717_4208827_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
transcript_2807.known	chr1	+	4883	4	FSM	ENSMUSG00000026708.17	ENSMUST00000028035.14	4883	4	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_2	20.7417989148054	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATGCTGGTCTTGTCTTT	NA	False	NA	8	True	NA	NA	NA	160898282	160914290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_160898927_160902326_160902501_160905798_160906051_160910477
transcript_28070.known	chr19	-	1979	15	FSM	ENSMUSG00000024830.18	ENSMUST00000130469.8	1979	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	32.5877935079116	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGTGGCTTTTGCCGGA	2803	False	NA	-2	True	AGTAAA	-14	NA	4213299	4206793	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4209564_4209705_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
transcript_28073.known	chr19	-	1418	14	FSM	ENSMUSG00000024830.18	ENSMUST00000137431.8	1418	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	27.2692036454243	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGAACCCGGCTCGTTC	2818	False	NA	NA	False	AATAGA	-16	NA	4213284	4206984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4207199_4207480_4207594_4207680_4207789_4207877_4207956_4208064_4208128_4208823_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
transcript_28075.known	chr19	-	1409	14	FSM	ENSMUSG00000024830.18	ENSMUST00000118483.2	1409	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	28.2558052892566	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGAACCCGGCTCGTTC	2818	False	NA	NA	False	AATAGA	-16	NA	4213284	4206984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4207199_4207680_4207789_4207877_4207956_4208064_4208128_4208608_4208717_4208827_4208919_4209001_4209093_4209225_4209327_4209401_4209460_4211066_4211215_4212258_4212328_4212601_4212723_4212820_4212862_4213166
transcript_2808.nic	chr1	+	1522	4	ISM	ENSMUSG00000026708.17	ENSMUST00000143486.7	1997	5	-247	3259	6	-5	5prime_fragment	FALSE	canonical	3	21	junction_2	48.0832611206852	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAATTAGATTTTTTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	160898288	160911035	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_160898927_160902326_160902501_160905898_160906051_160910477
transcript_28081.nic	chr19	+	1920	11	NIC	ENSMUSG00000024835.16	novel	1888	11	NA	NA	-39	0	combination_of_known_junctions	TRUE	canonical	3	402	junction_1	75.9439925208044	368	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3536	False	NA	18	True	AATAAA	-19	NA	4198578	4204034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_4198729_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
transcript_28086.known	chr19	+	1888	11	FSM	ENSMUSG00000024835.16	ENSMUST00000008893.9	1888	11	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	114.751906302248	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTGACCTACTGTTGTGG	3575	False	NA	18	True	AATAAA	-19	NA	4198617	4204034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4198736_4199340_4199544_4199861_4199985_4200088_4200219_4200438_4200621_4200705_4200826_4201393_4201499_4201578_4201725_4202520_4202579_4203225_4203490_4203595
transcript_28098.known	chr19	+	927	2	FSM	ENSMUSG00000045826.10	ENSMUST00000061086.9	927	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCCACTCTTGTGTCCCG	388	False	NA	NA	False	NA	NA	NA	4204604	4206750	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4204703_4205921
transcript_28099.known	chr19	-	878	2	FSM	ENSMUSG00000040247.7	ENSMUST00000238094.2	878	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTCCTCCACTCTCCA	NA	False	NA	NA	False	AATAAA	-35	NA	4235531	4234375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4235073_4235350
transcript_28106.known	chr19	-	2081	11	FSM	ENSMUSG00000024824.8	ENSMUST00000025740.8	2081	11	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_4	40.0660704337224	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGTGTGTTCCCCGTGAC	5998	False	NA	0	True	AATAAA	-15	NA	4251635	4245194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247403_4247475_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
transcript_2811.known	chr1	-	4072	12	FSM	ENSMUSG00000026705.17	ENSMUST00000111611.8	4072	12	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	12.7525722571391	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTGTTGGATTTTTT	NA	False	NA	3	True	AATAAA	-37	NA	160959081	160915944	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_160918082_160921250_160921358_160923098_160923308_160925832_160925967_160926711_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
transcript_28114.known	chr19	-	2101	10	FSM	ENSMUSG00000024824.8	ENSMUST00000237467.2	2101	10	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_3	31.4889751429854	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATAAAGGAAAGACAC	6027	False	NA	-24	True	NA	NA	NA	4251606	4245218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4246082_4246179_4246382_4247111_4247250_4247337_4247586_4247669_4247780_4250270_4250371_4250463_4250579_4250927_4251057_4251327_4251399_4251481
transcript_2812.known	chr1	-	4182	8	FSM	ENSMUSG00000026705.17	ENSMUST00000148952.8	4182	8	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_4	11.5387545750335	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAGAACAAAACATG	NA	False	NA	NA	False	NA	NA	NA	160959081	160924014	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_160926856_160929020_160929205_160930548_160930665_160932970_160933066_160934276_160934436_160936791_160937366_160957958_160958023_160958932
transcript_28122.known	chr19	+	1473	7	FSM	ENSMUSG00000040385.8	ENSMUST00000046094.6	1473	7	0	0	0	0	multi-exon	TRUE	canonical	3	3675	junction_3	183.825475806689	2857	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATAGCCTCTGTCTCTCTT	3277	False	NA	31	True	AATAAA	-20	NA	4242063	4245419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4242271_4242743_4242876_4243020_4243252_4243765_4243871_4244465_4244690_4244770_4244906_4244980
transcript_28131.known	chr19	+	835	3	FSM	ENSMUSG00000118245.2	ENSMUST00000236928.2	835	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTAGCGACTCGAGAACT	NA	False	NA	NA	False	AATAAA	-43	NA	4251777	4253239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4251798_4252125_4252238_4252536
transcript_28132.known	chr19	+	913	4	FSM	ENSMUSG00000024854.5	ENSMUST00000025773.5	913	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	2.16024689946929	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGACCTTACATCTCTTA	NA	False	NA	6	True	AATAAA	-18	NA	4281952	4283688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4282243_4282516_4282607_4282801_4282914_4283267
transcript_28133.known	chr19	+	646	3	FSM	ENSMUSG00000040663.10	ENSMUST00000126457.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCAGCCTCCAGCAGCTT	2131	False	NA	NA	False	NA	NA	NA	4264647	4272567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4264687_4270231_4270399_4272127
transcript_28136.known	chr19	-	2139	15	FSM	ENSMUSG00000005986.17	ENSMUST00000056888.13	2139	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	4.70128076340124	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTGCTGTCCTGCGTGGT	860	False	NA	-5	True	AATAAA	-17	NA	4333163	4320207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4320578_4320821_4320914_4320993_4321158_4321246_4321364_4321469_4321628_4322597_4322729_4322827_4322890_4323048_4323131_4323563_4323631_4330564_4330755_4330964_4331109_4331190_4331237_4331945_4332071_4332196_4332333_4332908
transcript_28137.known	chr19	-	1344	5	FSM	ENSMUSG00000041845.12	ENSMUST00000048197.10	1344	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	4.02336923485777	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACACATTCAAAGAGCTTAGC	9148	False	NA	NA	False	NA	NA	NA	4489460	4475486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4476285_4476654_4476790_4482082_4482193_4482795_4482884_4489247
transcript_28138.known	chr19	+	4061	21	FSM	ENSMUSG00000024892.18	ENSMUST00000224726.3	4061	21	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_8	10.9748576300561	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGGTCATGTACAGTCTAC	1701	False	NA	10	True	AATAAA	-25	NA	4560513	4671707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4560610_4565681_4565719_4651627_4651764_4651892_4652078_4652237_4652404_4652501_4652648_4652785_4652904_4653087_4653240_4654492_4654612_4657559_4657723_4659891_4660075_4667607_4667753_4667992_4668083_4668169_4668549_4668985_4669227_4669347_4669598_4669807_4670053_4670141_4670322_4670394_4670644_4670847_4670989_4671067
transcript_28140.known	chr19	-	1455	8	FSM	ENSMUSG00000024889.6	ENSMUST00000225476.2	1455	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	109.573011722592	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTTGGAACCTTGGGAC	NA	False	NA	-9	True	ATTAAA	-21	NA	4675669	4672618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674687_4674792_4675040_4675125_4675220_4675324_4675460
transcript_28141.nnic	chr19	-	1453	8	NNC	ENSMUSG00000024889.6	novel	1455	8	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_6	122.002007343807	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTTGGAACCTTGGGAC	NA	False	NA	-9	True	ATTAAA	-21	NA	4675681	4672618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675125_4675209_4675324_4675460
transcript_28142.known	chr19	-	1425	8	FSM	ENSMUSG00000024889.6	ENSMUST00000025823.6	1425	8	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_6	48.136286113662	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATGGTCTTGGAACCTTG	NA	False	NA	-13	True	ATTAAA	-17	NA	4675668	4672622	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4673271_4673528_4673592_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675125_4675220_4675324_4675460
transcript_28144.nic	chr19	-	1455	8	NIC	ENSMUSG00000024889.6	novel	1455	8	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_2	121.7077463032	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTTGGAACCTTGGGAC	NA	False	NA	-9	True	ATTAAA	-21	NA	4675681	4672618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_4673271_4673528_4673605_4673853_4673926_4674041_4674210_4674712_4674792_4675040_4675125_4675220_4675324_4675460
transcript_28149.nic	chr19	-	2156	5	Fusion	ENSMUSG00000006456.11_ENSMUSG00000094936.9	novel	1411	4	NA	NA	22	1	multi-exon	FALSE	canonical	3	35	junction_4	22.3760474615156	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGTGTGCTTTGAGAAA	7787	False	NA	-3	True	AATAAA	-17	NA	4861640	4835179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr19_-_4835596_4837388_4838071_4842425_4842849_4843843_4844038_4861199
transcript_28151.known	chr19	+	1783	4	FSM	ENSMUSG00000033760.18	ENSMUST00000036744.8	1783	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	20.1163283594862	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTCTTAACTGAGTGGC	NA	False	NA	NA	False	AATAAA	-17	NA	4806598	4815968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4806690_4807273_4807698_4812004_4812676_4815371
transcript_28153.known	chr19	-	2610	4	FSM	ENSMUSG00000094936.9	ENSMUST00000180248.8	2610	4	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_3	29.8923996285938	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTGTCTTGGGTGAC	NA	False	NA	NA	False	AATAAA	-13	NA	4843929	4834320	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4835596_4837388_4838071_4842425_4842849_4843699
transcript_28155.known	chr19	-	1018	3	FSM	ENSMUSG00000094936.9	ENSMUST00000178615.8	1018	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTATGTGTGCTTTGAGAA	NA	False	NA	-4	True	AATAAA	-16	NA	4843879	4835180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4835596_4842425_4842849_4843699
transcript_28157.known	chr19	-	3165	3	FSM	ENSMUSG00000006456.11	ENSMUST00000006625.8	3165	3	0	0	0	0	multi-exon	FALSE	canonical	3	363	junction_1	19	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGCAGGATGGTTCTGGCT	7765	False	NA	NA	False	AATAAA	-17	NA	4861662	4850596	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4851834_4852578_4854044_4861199
transcript_28158.known	chr19	+	4194	2	FSM	ENSMUSG00000033760.18	ENSMUST00000182065.2	4194	2	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATGAGAACAGTTCCTAAA	NA	False	NA	NA	False	AATAAA	-18	NA	4806592	4811370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4806690_4807273
transcript_2816.known	chr1	-	959	6	FSM	ENSMUSG00000026701.16	ENSMUST00000051925.5	959	6	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_5	839.164012574419	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGATCGCTCGCTATACTA	NA	False	NA	-54	True	NA	NA	NA	161078736	161069167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161076928_161077040_161078591
transcript_28160.known	chr19	-	456	2	FSM	ENSMUSG00000096370.9	ENSMUST00000178404.2	456	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTATGTGTGCTTTGAGAA	8187	False	NA	-4	True	AATAAA	-16	NA	4861240	4835180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4835596_4861199
transcript_28161.known	chr19	+	1211	3	FSM	ENSMUSG00000033760.18	ENSMUST00000183008.2	1211	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	39	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTAGACTTG	NA	False	NA	NA	False	NA	NA	NA	4806591	4810729	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4806690_4807273_4807698_4810040
transcript_28162.known	chr19	-	1067	8	FSM	ENSMUSG00000034108.7	ENSMUST00000037246.7	1067	8	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_5	30.737864703499	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889360	4875393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884200_4884339_4888858_4888932_4889224
transcript_28163.known	chr19	-	870	8	FSM	ENSMUSG00000034108.7	ENSMUST00000236178.2	870	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	202.991002112841	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889301	4875393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883476_4884267_4884339_4888858_4888932_4889224
transcript_28164.known	chr19	-	984	8	FSM	ENSMUSG00000034108.7	ENSMUST00000236451.2	984	8	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	206.828727330078	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGTGTCTCTGTGTTCTT	NA	False	NA	-7	True	ATTAAA	-20	NA	4889298	4875393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4884221_4884339_4888858_4888932_4889224
transcript_28165.known	chr19	-	840	7	FSM	ENSMUSG00000034108.7	ENSMUST00000235245.2	840	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	223.397814074653	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTGCTGTAGCCTGAACAAA	NA	False	NA	-51	True	NA	NA	NA	4889315	4875437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4875693_4875797_4875902_4875971_4876050_4882860_4882922_4883368_4883547_4888858_4888932_4889224
transcript_28166.known	chr19	+	1980	14	FSM	ENSMUSG00000083282.4	ENSMUST00000119694.3	1980	14	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_8	8.77530154238379	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGTAAGTGCTTAGTC	NA	False	NA	10	True	AATAAA	-21	NA	4905157	4910946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4905515_4905725_4905825_4906097_4906183_4906274_4906337_4906539_4906616_4907997_4908112_4908214_4908361_4908443_4908541_4908619_4908701_4909430_4909551_4909629_4909695_4909785_4909877_4910277_4910337_4910418
transcript_28168.nic	chr19	+	1946	14	NIC	ENSMUSG00000083282.4	novel	1980	14	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_2	27.6749945879631	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTGTGTGGTGTAAGTG	NA	False	NA	3	True	AATAAA	-14	NA	4905196	4910939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_4905515_4905725_4905837_4906097_4906183_4906274_4906337_4906539_4906616_4907997_4908112_4908214_4908361_4908443_4908541_4908619_4908701_4909430_4909551_4909629_4909695_4909785_4909877_4910277_4910337_4910418
transcript_28174.known	chr19	+	2558	3	FSM	ENSMUSG00000006463.14	ENSMUST00000006632.8	2558	3	0	0	0	0	multi-exon	TRUE	canonical	3	97	junction_1	34	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTCTTTTTGTTTGTTT	NA	False	NA	22	True	NA	NA	NA	4928699	4935425	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4929058_4930148_4930427_4933503
transcript_28177.known	chr19	+	2314	3	FSM	ENSMUSG00000006463.14	ENSMUST00000162134.2	2314	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	74.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCATGTCTTTTTGTTTGT	NA	False	NA	20	True	NA	NA	NA	4928717	4935423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_4928834_4930148_4930427_4933503
transcript_28181.known	chr19	-	2683	18	FSM	ENSMUSG00000063904.5	ENSMUST00000025851.4	2683	18	0	0	0	0	multi-exon	TRUE	canonical	3	495	junction_17	96.7659038009169	505	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCAGTGTATGTTTCTTT	NA	False	NA	-5	True	AATAAA	-17	NA	4978315	4957256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_4957826_4959873_4960037_4963800_4963981_4964607_4964729_4964837_4964963_4965046_4965110_4966306_4966400_4966725_4966839_4966919_4967115_4967899_4967959_4968047_4968179_4968272_4968404_4971168_4971263_4972349_4972425_4973094_4973233_4973711_4973802_4976812_4977088_4978247
transcript_28187.known	chr19	+	3045	5	FSM	ENSMUSG00000024902.6	ENSMUST00000025836.6	3045	5	0	0	0	0	multi-exon	FALSE	canonical	3	572	junction_2	14.5859521458148	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTATATATAGGTATATGT	3543	False	NA	NA	False	ATTAAA	-22	NA	5012174	5017027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5012544_5012906_5013003_5013353_5013448_5013533_5013694_5014701
transcript_28188.known	chr19	+	813	5	FSM	ENSMUSG00000024902.6	ENSMUST00000236917.2	813	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	253.71871728353	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTCTCAGCTTCTCTCC	3744	False	NA	10	True	AATAAA	-13	NA	5012375	5014972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5012544_5012906_5013003_5013353_5013448_5013533_5013718_5014701
transcript_2819.known	chr1	-	913	5	FSM	ENSMUSG00000026701.16	ENSMUST00000156678.8	913	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	765.536209137099	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAATGGCACCAAAACCTT	NA	False	NA	-20	True	ATTAAA	-2	NA	161078739	161069133	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078563
transcript_28190.known	chr19	+	2619	12	FSM	ENSMUSG00000024891.7	ENSMUST00000236152.2	2619	12	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	10.4311992290135	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGAGTGTTCACTTCT	4058	False	NA	21	True	ATTAAA	-22	NA	5073887	5082000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077052_5077188_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
transcript_28192.nnic	chr19	+	2290	11	NIC	ENSMUSG00000024891.7	novel	2619	12	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_4	23.4795655837156	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGACGGATTCCTGGAGTGT	4244	False	NA	13	True	ATTAAA	-14	NA	5074073	5081992	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_5074306_5074538_5074621_5076055_5076217_5076385_5076526_5077370_5077469_5077707_5077793_5078868_5079000_5079239_5079349_5079436_5079523_5080315_5080519_5081029
transcript_28196.known	chr19	+	1388	10	FSM	ENSMUSG00000080268.5	ENSMUST00000116567.4	1388	10	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_4	16.1528195757556	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGCTGATGTGTGGCTG	2730	False	NA	8	True	AATAAA	-19	NA	5091381	5099945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5091519_5095920_5096067_5096163_5096255_5096421_5096550_5096677_5096758_5096842_5096940_5097419_5097513_5098536_5098602_5099020_5099061_5099434
transcript_2820.known	chr1	-	2387	5	FSM	ENSMUSG00000026701.16	ENSMUST00000071718.12	2387	5	0	0	0	0	multi-exon	FALSE	canonical	3	1689	junction_3	62.8823305865805	1197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAATGTGAGTCTTGTGTT	NA	False	NA	NA	False	NA	NA	NA	161078789	161067681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161074826_161074984_161078591
transcript_28205.known	chr19	+	2032	2	FSM	ENSMUSG00000047379.8	ENSMUST00000053705.8	2032	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTGGCTCTGTTACTCTC	202	False	NA	9	True	AATAAA	-16	NA	5088853	5091159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5090061_5090334
transcript_28210.known	chr19	+	1488	8	FSM	ENSMUSG00000024875.6	ENSMUST00000025811.6	1488	8	0	0	0	0	multi-exon	FALSE	canonical	3	484	junction_7	32.2509294281512	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTATTCATATTTTGTC	NA	False	NA	NA	False	GGGGCT	-14	NA	5138572	5142909	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5140031_5140111_5141395_5141454_5141568_5141725_5142156_5142251_5142329
transcript_28212.known	chr19	+	1018	7	FSM	ENSMUSG00000024875.6	ENSMUST00000238093.2	1018	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	209.84657093537	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTTGACCCTGGTTCC	NA	False	NA	26	True	NA	NA	NA	5138572	5142533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5138777_5139446_5139659_5139799_5139905_5140031_5140111_5141395_5141454_5141568_5141725_5142329
transcript_28213.known	chr19	-	1913	6	FSM	ENSMUSG00000024870.7	ENSMUST00000025804.7	1913	6	0	0	0	0	multi-exon	FALSE	canonical	3	994	junction_1	78.6628247649422	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGGTGACTGAGTGTGG	1501	False	NA	0	True	AATAAA	-43	NA	5157100	5149232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5150601_5150694_5150827_5154668_5154765_5154860_5154957_5155205_5155279_5156952
transcript_28215.known	chr19	-	757	5	FSM	ENSMUSG00000024870.7	ENSMUST00000236149.2	757	5	0	0	0	0	multi-exon	FALSE	canonical	3	1015	junction_3	67.2434941090958	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGCTAGGAGGGGCACT	1568	False	NA	NA	False	NA	NA	NA	5157033	5150415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5150827_5154668_5154765_5154860_5154957_5155205_5155279_5156952
transcript_28216.known	chr19	-	3169	16	FSM	ENSMUSG00000024862.17	ENSMUST00000116563.8	3169	16	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_15	16.0036107036992	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCTTGTTTTGAGGAGT	NA	False	NA	-1	True	AATAAA	-18	NA	5168588	5157773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160293_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5167221_5167461_5168149
transcript_28217.nic	chr19	-	2942	16	NIC	ENSMUSG00000024862.17	novel	2940	16	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_15	17.0507738501479	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCTTGTTTTGAGGAGT	NA	False	NA	-1	True	AATAAA	-18	NA	5168324	5157773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160293_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5167221_5167498_5168149
transcript_28219.known	chr19	-	2940	16	FSM	ENSMUSG00000024862.17	ENSMUST00000025798.13	2940	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	25.1779444929265	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCTTGTTTTGAGGAGT	NA	False	NA	-1	True	AATAAA	-18	NA	5168328	5157773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5158717_5159130_5159189_5159328_5159454_5159520_5159671_5159760_5159870_5160224_5160287_5160394_5160445_5161165_5161266_5161392_5161567_5161646_5161749_5161853_5161942_5162745_5162969_5163808_5163879_5163968_5164200_5167221_5167498_5168149
transcript_28220.known	chr19	-	4869	24	FSM	ENSMUSG00000024855.11	ENSMUST00000025786.9	4869	24	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_19	9.30455099331212	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTTGTTATCTTCGAT	NA	False	NA	NA	False	AATAAA	-25	NA	5323147	5183185	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5185054_5185147_5185268_5186720_5186948_5188957_5189094_5189307_5189351_5191187_5191231_5191634_5191738_5192271_5192383_5192543_5192699_5193378_5193486_5193802_5193908_5194827_5194964_5195098_5195215_5197154_5197236_5202301_5202396_5202687_5202849_5203691_5203752_5205716_5205798_5205883_5205976_5206384_5206530_5209995_5210122_5210745_5210836_5217951_5218040_5322566
transcript_28221.known	chr19	-	3222	21	FSM	ENSMUSG00000024853.11	ENSMUST00000025774.11	3222	21	0	0	0	0	multi-exon	TRUE	canonical	3	1448	junction_15	340.757138589935	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACTGGCTAACTACTTGGA	3866	False	NA	-25	True	AATAAA	-18	NA	5345483	5323959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5324556_5324819_5325006_5325091_5325192_5329296_5329399_5329497_5329641_5329869_5329978_5333670_5333779_5333885_5333976_5334602_5334753_5336216_5336445_5336604_5336686_5336838_5336977_5337096_5337313_5337562_5337655_5337937_5338035_5338331_5338442_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
transcript_28222.known	chr19	-	933	9	FSM	ENSMUSG00000024853.11	ENSMUST00000235182.2	933	9	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_4	555.172045405746	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CGTCGGAACCGAAAGAAGAA	3918	False	NA	NA	False	NA	NA	NA	5345431	5337300	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5337313_5337562_5337655_5337937_5338035_5338331_5338439_5341332_5341451_5343107_5343348_5344326_5344405_5345068_5345116_5345289
transcript_28223.known	chr19	-	405	2	FSM	ENSMUSG00000118263.2	ENSMUST00000235637.2	405	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAGTTCTTTACTCTTTA	9200	False	NA	-3	True	NA	NA	NA	5357444	5355905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5356162_5357295
transcript_28227.nnic	chr19	-	836	3	NNC	ENSMUSG00000024844.16	novel	758	3	NA	NA	11	0	at_least_one_novel_splicesite	FALSE	canonical	3	746	junction_2	2648	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTGGTGTTCTGTGTCA	8997	False	NA	-9	True	AATAAA	-14	NA	5416380	5414668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_5415187_5415845_5415985_5416201
transcript_28228.known	chr19	-	758	3	FSM	ENSMUSG00000024844.16	ENSMUST00000170010.3	758	3	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_2	2345.5	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTGGTGTTCTGTGTCA	8986	False	NA	-9	True	AATAAA	-14	NA	5416391	5414668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5415187_5415845_5415985_5416290
transcript_28230.known	chr19	-	732	3	FSM	ENSMUSG00000024844.16	ENSMUST00000237167.2	732	3	0	0	0	0	multi-exon	FALSE	canonical	3	736	junction_2	2653	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATCTGTTGGATGCCCTT	8743	False	NA	-107	True	NA	NA	NA	5416634	5414766	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5415187_5415845_5415985_5416461
transcript_28231.known	chr19	-	1261	3	FSM	ENSMUSG00000024844.16	ENSMUST00000025762.16	1261	3	0	0	0	0	multi-exon	FALSE	canonical	3	4588	junction_2	727	2592	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGTTCTGTGTCAGAG	8181	False	NA	-6	True	AATAAA	-17	NA	5417196	5414665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5415187_5415845_5415985_5416595
transcript_28233.known	chr19	-	743	2	FSM	ENSMUSG00000024844.16	ENSMUST00000237704.2	743	2	0	0	0	0	multi-exon	FALSE	canonical	3	1029	junction_1	0	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTGTTCTGTGTCAG	8558	False	NA	-8	True	AATAAA	-15	NA	5416819	5414667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5415187_5416595
transcript_28234.known	chr19	+	2556	6	FSM	ENSMUSG00000024841.9	ENSMUST00000025759.9	2556	6	0	0	0	0	multi-exon	TRUE	canonical	3	703	junction_2	59.7581793564697	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTTTTATGAAGAGTT	1792	False	NA	23	True	AATAAA	-40	NA	5416768	5421554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5417239_5418085_5418305_5418449_5418559_5418644_5418754_5418922_5418971_5419953
transcript_28235.known	chr19	-	5091	20	FSM	ENSMUSG00000039148.6	ENSMUST00000044207.5	5091	20	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_1	46.7672968579718	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATTTGGTTGTTTTTTTT	9040	False	NA	NA	False	AATAAA	-23	NA	5438731	5427550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5430164_5430247_5430370_5430465_5430556_5431008_5431145_5431237_5431329_5431693_5431782_5431988_5432100_5432213_5432388_5432742_5432886_5432967_5433102_5433182_5433308_5433647_5433855_5433962_5434106_5434191_5434292_5434397_5434476_5434645_5434752_5434850_5434978_5435490_5435547_5435839_5435898_5438342
transcript_28236.nic	chr19	-	1652	7	ISM	ENSMUSG00000039330.6	ENSMUST00000235569.2	1726	8	1246	0	1246	0	3prime_fragment	TRUE	canonical	3	8	junction_6	13.7234592334926	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTACAGTGTGAGACTTCT	6230	False	NA	NA	False	ATTAAA	-13	NA	5451308	5440076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_-_5440226_5440636_5440756_5440941_5441042_5444310_5444482_5449940_5450089_5450261_5450966_5451047
transcript_28238.known	chr19	-	992	7	FSM	ENSMUSG00000024914.17	ENSMUST00000025853.16	992	7	0	0	0	0	multi-exon	TRUE	canonical	3	999	junction_1	76.7282361469506	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGATTTTGGTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	5475007	5472838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5473054_5473358_5473448_5473587_5473682_5473799_5473920_5474209_5474304_5474388_5474462_5474700
transcript_28239.known	chr19	-	734	6	FSM	ENSMUSG00000024914.17	ENSMUST00000136579.3	734	6	0	0	0	0	multi-exon	FALSE	canonical	3	999	junction_1	82.8700187039921	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTTCTTAAATTTATTAAA	NA	False	NA	NA	False	NA	NA	NA	5474542	5472870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5473054_5473358_5473448_5473587_5473682_5473799_5473920_5474209_5474304_5474388
transcript_2824.known	chr1	-	874	4	FSM	ENSMUSG00000026701.16	ENSMUST00000156318.8	874	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	851.560267326329	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCGTAGAAAGATCGTGGCA	NA	False	NA	-91	True	NA	NA	NA	161078691	161069204	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161078326
transcript_28243.known	chr19	+	1529	2	FSM	ENSMUSG00000047423.11	ENSMUST00000054477.8	1529	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACACTGTCCTGATGGTT	260	False	NA	34	True	AATAAA	-35	NA	5475184	5477341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5475337_5475964
transcript_28244.known	chr19	+	1528	2	FSM	ENSMUSG00000047423.11	ENSMUST00000159759.3	1528	2	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAACACTGTCCTGATGGTT	247	False	NA	34	True	AATAAA	-35	NA	5475171	5477341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5475337_5475978
transcript_28245.known	chr19	-	4165	2	FSM	ENSMUSG00000095098.3	ENSMUST00000236881.2	4165	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCTGGCTAGAGTCATATA	5331	False	NA	NA	False	NA	NA	NA	5507532	5503212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5507213_5507367
transcript_28246.known	chr19	+	1209	10	FSM	ENSMUSG00000024911.8	ENSMUST00000225141.2	1209	10	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_5	12.1837779216647	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGGTCCTTGTTCCAGG	NA	False	NA	17	True	AATAAA	-17	NA	5510643	5515079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513333_5513631_5513741_5513814_5513879_5514156_5514244_5514361_5514460_5514952
transcript_28247.known	chr19	+	1215	10	FSM	ENSMUSG00000024911.8	ENSMUST00000025847.7	1215	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	35.2423706830007	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGGTCCTTGTTCCA	NA	False	NA	15	True	AATAAA	-15	NA	5510656	5515077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5510807_5510988_5511188_5511417_5511545_5512559_5512661_5513198_5513354_5513631_5513741_5513814_5513879_5514156_5514244_5514361_5514460_5514952
transcript_28249.known	chr19	-	1241	10	FSM	ENSMUSG00000024910.6	ENSMUST00000025844.6	1241	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.15470053837925	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGTGTGGATTCAGCT	NA	False	NA	NA	False	CATAAA	-17	NA	5518535	5515267	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5515480_5515557_5515759_5515832_5515898_5516047_5516174_5516258_5516340_5516416_5516514_5516608_5516764_5517050_5517165_5517865_5517951_5518430
transcript_28257.known	chr19	-	2067	16	FSM	ENSMUSG00000024906.11	ENSMUST00000124334.8	2067	16	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_15	11.5573930163049	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGGTCCTTCTGAAAT	NA	False	NA	2	True	AATAAA	-39	NA	5538430	5532859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5533058_5533135_5533220_5533482_5533587_5533662_5533792_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789_5537920_5538015
transcript_28258.nic	chr19	-	1743	15	ISM	ENSMUSG00000024906.11	ENSMUST00000124334.8	2067	16	420	0	34	0	3prime_fragment	FALSE	canonical	3	83	junction_4	10.1992896911541	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCAAGGTCCTTCTGAAAT	NA	False	NA	2	True	AATAAA	-39	NA	5538010	5532859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_-_5533058_5533135_5533220_5533482_5533587_5533662_5533792_5533957_5534054_5534140_5534258_5534886_5534985_5535066_5535189_5535285_5535382_5535515_5535654_5536056_5536143_5536307_5536377_5536514_5536617_5537052_5537136_5537789
transcript_2826.known	chr1	-	1294	4	FSM	ENSMUSG00000026701.16	ENSMUST00000192639.6	1294	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	831.771736849854	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAACCGTTGTCATGTTT	NA	False	NA	-11	True	AATAAA	-10	NA	161078756	161068584	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_161069420_161071144_161071292_161071765_161071913_161078591
transcript_28265.known	chr19	+	2634	11	FSM	ENSMUSG00000024909.16	ENSMUST00000166303.9	2634	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	23.5805004187782	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTTTAGCCCAGGAGCT	NA	False	NA	NA	False	ATTAAA	-16	NA	5523981	5532545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5524482_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
transcript_28266.nic	chr19	+	1845	11	NIC	ENSMUSG00000024909.16	novel	2634	11	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	23.0008695487801	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGGCTGAGGTGGGTGA	NA	False	NA	10	True	AATAAA	-15	NA	5523976	5531881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_5524352_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
transcript_28267.known	chr19	+	2215	11	FSM	ENSMUSG00000024909.16	ENSMUST00000235523.2	2215	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	23.8706933288499	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTTTAGCCCAGGAGCT	NA	False	NA	NA	False	ATTAAA	-16	NA	5524342	5532545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5524424_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
transcript_28268.known	chr19	+	1557	11	FSM	ENSMUSG00000024909.16	ENSMUST00000165485.8	1557	11	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	7.8873316146844	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGGCTGAGGTGGGTGA	NA	False	NA	10	True	AATAAA	-15	NA	5524715	5531881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5524803_5525088_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
transcript_28270.known	chr19	+	1781	10	FSM	ENSMUSG00000024909.16	ENSMUST00000070118.14	1781	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	6.34209919681348	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGGCTGAGGTGGGTGA	NA	False	NA	10	True	AATAAA	-15	NA	5524777	5531881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5525207_5525435_5525485_5526093_5526301_5527589_5527713_5527954_5528072_5528228_5528349_5530057_5530178_5530261_5530389_5530573_5530770_5531588
transcript_28271.known	chr19	-	1872	12	FSM	ENSMUSG00000056185.6	ENSMUST00000237111.2	1872	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	3.10691045284274	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTCGGCTTGCCTTTAC	117	False	NA	-4	True	AATAAA	-17	NA	5560491	5545305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5546011_5546085_5546246_5546343_5546431_5547013_5547054_5547317_5547394_5547474_5547581_5547702_5547808_5547932_5548057_5548207_5548330_5548423_5548535_5548747_5548853_5560360
transcript_28283.known	chr19	+	2354	4	FSM	ENSMUSG00000056201.9	ENSMUST00000209469.2	2354	4	0	0	0	0	multi-exon	FALSE	canonical	3	6173	junction_3	71.2850303749361	6178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	5540482	5545229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408
transcript_28288.known	chr19	+	1148	6	FSM	ENSMUSG00000056201.9	ENSMUST00000116560.3	1148	6	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_4	3070.36039578418	6224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATGGCTTTTGGGTTTGG	NA	False	NA	12	True	NA	NA	NA	5540512	5544057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5540631_5542524_5542833_5543182_5543260_5543408_5543519_5543520_5543527_5543528
transcript_28289.known	chr19	-	1703	13	FSM	ENSMUSG00000056185.6	ENSMUST00000070172.6	1703	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.3124344857253	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCGGCTTGCCTTTACTTTC	42	False	NA	0	True	AATAAA	-21	NA	5560566	5545301	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5545677_5545924_5546011_5546085_5546246_5546343_5546431_5547013_5547054_5547317_5547394_5547474_5547581_5547702_5547808_5547932_5548057_5548207_5548330_5548423_5548535_5548747_5548853_5560360
transcript_2829.known	chr1	-	2558	1	FSM	ENSMUSG00000026701.16	ENSMUST00000194613.2	2558	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAACAAAAACAA	NA	False	NA	NA	False	ATTAAA	-30	NA	161078732	161076174	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_161076200_161078700
transcript_28290.known	chr19	-	2154	14	FSM	ENSMUSG00000024926.11	ENSMUST00000113641.4	2154	14	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_10	96.4922046702747	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATCAGGAGTTCTTACCA	3440	False	NA	-3	True	AATAAA	-18	NA	5660265	5653041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5658829_5658986_5659263_5659401_5659490_5659560_5659879_5659947_5660045
transcript_28294.known	chr19	-	1386	13	FSM	ENSMUSG00000024926.11	ENSMUST00000236229.2	1386	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	61.0948147463342	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACACTACCCATTGCCAT	3648	False	NA	NA	False	NA	NA	NA	5660057	5653445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879_5659947_5660045
transcript_2830.known	chr1	-	798	3	FSM	ENSMUSG00000040323.14	ENSMUST00000151268.2	798	3	0	0	0	0	multi-exon	FALSE	non_canonical	3	106	junction_1	98.5	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAACATGGGGGGGCCCCT	NA	False	NA	NA	False	NA	NA	NA	161555058	161553810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_161553876_161554208_161554584_161554700
transcript_28302.known	chr19	-	1905	12	FSM	ENSMUSG00000024926.11	ENSMUST00000235701.2	1905	12	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	58.4797768251612	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTATCAGGAGTTCTTA	3629	False	NA	-6	True	AATAAA	-15	NA	5660076	5653044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490_5659560_5659879
transcript_28303.known	chr19	-	1960	11	FSM	ENSMUSG00000024926.11	ENSMUST00000236964.2	1960	11	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	57.9537746829316	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTATCAGGAGTTCTTAC	3895	False	NA	-5	True	AATAAA	-16	NA	5659810	5653043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5653581_5653661_5653744_5653857_5654018_5655399_5655494_5655570_5655712_5657578_5657669_5657743_5657993_5658282_5658358_5658665_5658741_5659263_5659401_5659490
transcript_28304.known	chr19	+	2716	11	FSM	ENSMUSG00000024927.9	ENSMUST00000025867.6	2716	11	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_5	8.59069263796581	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGAGAGTAGCTGTCTTT	NA	False	NA	10	True	AATAAA	-16	NA	5687510	5698158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5687870_5688459_5688487_5688578_5688731_5688882_5689032_5689886_5689979_5690330_5690463_5691208_5691314_5691491_5691705_5695352_5695434_5695540_5695616_5696827
transcript_28305.nic	chr19	-	1843	9	ISM	ENSMUSG00000056917.14	ENSMUST00000236006.2	3513	16	6572	-3	-226	0	3prime_fragment	TRUE	canonical	3	60	junction_4	8.95038406997152	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTATTTGTGTTTGTGTGT	NA	False	NA	-3	True	AAAAAG	-24	NA	5705091	5701215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_-_5701591_5701663_5701743_5701933_5701989_5702072_5702175_5702288_5702398_5702482_5702595_5702682_5702902_5704026_5704302_5704574
transcript_28309.known	chr19	-	705	4	FSM	ENSMUSG00000079478.10	ENSMUST00000159693.2	705	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	231.015631986717	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGGTTTGTTCTTTCTTGG	NA	False	NA	-1	True	AAAACA	-13	NA	5781760	5780334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5780741_5781268_5781354_5781466_5781624_5781703
transcript_2831.known	chr1	-	6327	24	FSM	ENSMUSG00000040297.13	ENSMUST00000048377.11	6327	24	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_17	25.1317135224534	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAAATCTTCGTGTATCT	418	False	NA	NA	False	AATAAA	-14	NA	161704251	161643682	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_161646379_161647963_161648020_161655225_161655318_161655724_161655880_161656804_161656910_161660984_161661073_161661604_161662763_161665287_161665379_161666322_161666392_161671570_161671637_161672357_161672450_161672871_161672928_161673128_161673150_161674773_161674880_161676210_161676319_161679843_161679912_161680379_161680517_161681283_161681408_161684389_161684541_161684912_161685051_161686918_161687074_161689760_161689872_161691482_161691595_161703879
transcript_28313.known	chr19	-	2586	17	FSM	ENSMUSG00000024941.10	ENSMUST00000025890.10	2586	17	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	68.5770552007011	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGGTCCCAGCTCAGTC	9907	False	NA	-11	True	AATAAA	-13	NA	5821429	5808454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809371_5809692_5809782_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
transcript_28314.known	chr19	-	2395	17	FSM	ENSMUSG00000024941.10	ENSMUST00000236773.2	2395	17	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	63.7916224417439	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGGAAAGGAGAAGAGAAA	9910	False	NA	NA	False	AAAAAG	-3	NA	5821426	5808690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5808725_5808827_5808889_5808967_5809175_5809298_5809368_5809692_5809833_5810008_5810174_5810560_5810637_5810740_5810930_5811680_5811837_5814696_5814811_5815337_5815446_5816185_5816345_5819496_5819653_5819748_5819840_5820230_5820581_5820750_5820892_5821247
transcript_28316.known	chr19	-	3004	2	FSM	ENSMUSG00000092274.4	ENSMUST00000174287.2	3004	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCTTAGAATTGTCATGG	10003	False	NA	-12	True	AATAAA	-15	NA	5895504	5892334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5894787_5894952
transcript_28317.known	chr19	-	4504	11	FSM	ENSMUSG00000024816.13	ENSMUST00000025728.13	4504	11	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	18.6118241986109	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAGTTTAAATTATTTTA	4335	False	NA	NA	False	NA	NA	NA	5925302	5899729	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5902771_5906612_5906818_5912278_5912423_5913251_5913376_5915096_5915322_5919464_5919632_5919763_5919823_5920038_5920141_5923196_5923365_5924737_5924823_5925118
transcript_28319.known	chr19	+	2480	6	FSM	ENSMUSG00000024818.16	ENSMUST00000025732.14	2480	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	2.63818119165458	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGATGATCCCTTTCTGT	2866	False	NA	NA	False	AATAAA	-17	NA	5927844	5935794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5928720_5929876_5929921_5930112_5930185_5930467_5930654_5934372_5934632_5934750
transcript_2832.known	chr1	+	3290	2	FSM	ENSMUSG00000026698.9	ENSMUST00000111594.3	3290	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	AAAAAG	-8	NA	161796754	161801004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_161796849_161797808
transcript_28320.known	chr19	-	3314	11	FSM	ENSMUSG00000024826.16	ENSMUST00000136983.8	3314	11	0	0	0	0	multi-exon	FALSE	canonical	3	642	junction_2	68.1739686390634	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTATGAGTGCTCTGTCT	1272	False	NA	NA	False	NA	NA	NA	5962899	5946543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5948660_5951244_5951327_5952131_5952245_5952390_5952520_5952658_5952797_5954267_5954347_5954481_5954575_5955416_5955581_5956551_5956660_5957028_5957190_5962768
transcript_28321.known	chr19	+	410	2	FSM	ENSMUSG00000110156.3	ENSMUST00000210917.2	410	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTAAGCTCACACTACACAG	9355	False	NA	0	True	NA	NA	NA	5962980	5964854	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5963101_5964564
transcript_28323.known	chr19	+	647	2	FSM	ENSMUSG00000110156.3	ENSMUST00000209642.2	647	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCAGAGCCTGGCTGTTCC	9224	False	NA	NA	False	NA	NA	NA	5962849	5964621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_5963101_5964225
transcript_28324.nic	chr19	-	2400	18	NIC	ENSMUSG00000024833.16	novel	2421	18	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_17	91.7598792094124	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAATCTTTTTTTTTTCC	1618	False	NA	0	True	AATAAA	-21	NA	6014238	5990569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011215_6013853
transcript_28325.known	chr19	-	2421	18	FSM	ENSMUSG00000024833.16	ENSMUST00000025752.15	2421	18	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_17	37.0964328301216	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTAATCTTTTTTTTTTCC	1626	False	NA	0	True	AATAAA	-21	NA	6014230	5990569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5991046_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
transcript_28328.known	chr19	-	2391	18	FSM	ENSMUSG00000024833.16	ENSMUST00000165143.3	2391	18	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	92.2413338358681	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	1626	False	NA	NA	False	NA	NA	NA	6014230	5991134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5991581_5992023_5992151_5992377_5992438_5993250_5993358_5993582_5993692_5996497_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
transcript_2833.known	chr1	+	2196	2	FSM	ENSMUSG00000026698.9	ENSMUST00000028021.7	2196	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGATGTGACTACATATGAT	NA	False	NA	NA	False	AAAACA	-10	NA	161796756	161799899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_161796849_161797795
transcript_28332.known	chr19	-	1703	13	FSM	ENSMUSG00000024833.16	ENSMUST00000238075.2	1703	13	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_12	34.8746764222345	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCGTTTCACATGCTCTTC	1659	False	NA	NA	False	GATAAA	-14	NA	6014197	5996303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_5996572_5997731_5997771_5998429_5998555_6000473_6000517_6001169_6001233_6001658_6001815_6003092_6003182_6003718_6003913_6006035_6006143_6008845_6008904_6009060_6009153_6011118_6011244_6013853
transcript_28333.known	chr19	-	1897	10	FSM	ENSMUSG00000037451.9	ENSMUST00000041827.8	1897	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	2.68512132746546	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGAGATGCTGGGTCTT	8724	False	NA	NA	False	AATAAA	-19	NA	6036171	6020261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6020582_6021426_6021634_6021746_6021856_6022883_6023099_6030387_6030504_6031657_6031782_6032860_6033030_6034825_6034981_6035607_6035712_6035793
transcript_28335.known	chr19	-	3062	22	FSM	ENSMUSG00000024942.20	ENSMUST00000025891.11	3062	22	0	0	0	0	multi-exon	TRUE	canonical	2	82	junction_11	40.0795693849892	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGTCTCTGGGTGTTAT	2594	False	NA	-6	True	AATAAA	-14	NA	6065236	6038572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6039418_6040021_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6046808_6046821_6047720_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326_6061461_6063618_6063738_6064025_6064096_6064230_6064499_6065135
transcript_28336.known	chr19	-	3122	22	FSM	ENSMUSG00000024942.20	ENSMUST00000164843.10	3122	22	0	0	0	0	multi-exon	FALSE	canonical	2	39	junction_21	51.1945734794372	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTGTCTCTGGGTGTTA	1903	False	NA	-7	True	AATAAA	-13	NA	6065927	6038573	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6039418_6040021_6040081_6040367_6040485_6041568_6041648_6041885_6041955_6042379_6042445_6043903_6043962_6044050_6044117_6044589_6044630_6044708_6044918_6046808_6046821_6047720_6047897_6057281_6057443_6057529_6057605_6058705_6058792_6059116_6059201_6061044_6061214_6061326_6061461_6063618_6063738_6064025_6064096_6064230_6064499_6065765
transcript_28337.known	chr19	+	3464	16	FSM	ENSMUSG00000024807.19	ENSMUST00000138532.8	3464	16	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_11	13.9593059362642	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTAGAACGTGTCACCTA	739	False	NA	13	True	AATAAA	-16	NA	6096605	6103742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6097159_6097946_6098096_6098304_6098398_6098484_6098638_6098724_6098774_6099179_6099284_6099800_6099928_6100021_6100122_6100199_6100266_6100354_6100472_6100551_6100716_6100970_6101100_6101184_6101341_6101422_6101610_6102357_6102510_6102577
transcript_2834.known	chr1	+	704	2	FSM	ENSMUSG00000026698.9	ENSMUST00000160881.2	704	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTCTGTCAGTACAGACA	NA	False	NA	NA	False	NA	NA	NA	161796867	161798441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_161796939_161797808
transcript_28341.known	chr19	-	1764	4	FSM	ENSMUSG00000007338.11	ENSMUST00000007482.8	1764	4	0	0	0	0	multi-exon	FALSE	canonical	3	907	junction_2	10.0332779621949	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGAAACTCCTGTAACAC	NA	False	NA	0	True	ATTAAA	-42	NA	6107815	6103651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6105013_6105105_6105231_6106958_6107110_6107688
transcript_28345.known	chr19	-	1311	3	FSM	ENSMUSG00000007338.11	ENSMUST00000235520.2	1311	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	445.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACGGTGTTCAGAACCT	NA	False	NA	-15	True	ATTAAA	-15	NA	6107788	6103926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6105013_6105105_6105231_6107688
transcript_28349.known	chr19	+	508	5	FSM	ENSMUSG00000038274.14	ENSMUST00000043074.14	508	5	0	0	0	0	multi-exon	FALSE	canonical	3	1236	junction_1	5677.26170790109	14957	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTCTTATGTTTTCTTC	1081	False	NA	1	True	AATAAA	-13	NA	6107972	6109546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6108032_6108275_6108356_6108457_6108603_6109173_6109230_6109378
transcript_2835.known	chr1	-	4541	8	FSM	ENSMUSG00000026694.20	ENSMUST00000028017.16	4541	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_6	17.6704526812185	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGCTTTTTTGTGGTCC	NA	False	NA	NA	False	NA	NA	NA	162376120	162359695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162371754_162371955_162373336_162374097_162375672
transcript_28350.known	chr19	+	450	5	FSM	ENSMUSG00000038274.14	ENSMUST00000237859.2	450	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	6192.96432958402	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTGCCATGCTAATAAAGC	1080	False	NA	-29	True	NA	NA	NA	6107971	6109516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6108032_6108304_6108356_6108457_6108603_6109173_6109230_6109378
transcript_28351.known	chr19	+	503	5	FSM	ENSMUSG00000038274.14	ENSMUST00000236217.2	503	5	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	6188.20864628852	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTATGTTTTCTTCATT	1107	False	NA	4	True	AATAAA	-16	NA	6107998	6109549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6108032_6108257_6108356_6108457_6108603_6109173_6109230_6109378
transcript_28357.known	chr19	+	472	4	FSM	ENSMUSG00000038274.14	ENSMUST00000237840.2	472	4	0	0	0	0	multi-exon	FALSE	canonical	3	14010	junction_2	399.82023738453	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTTCTTATGTTTTCTTC	1361	False	NA	1	True	AATAAA	-13	NA	6108252	6109546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6108356_6108457_6108603_6109173_6109230_6109378
transcript_28358.known	chr19	+	1281	1	FSM	ENSMUSG00000075227.7	ENSMUST00000162726.5	1281	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	60	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGCAGTGCCTTTTCCG	2533	False	NA	11	True	AATAAA	-22	NA	6111221	6112502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6111200_6112500
transcript_2836.nic	chr1	-	2560	8	NIC	ENSMUSG00000026694.20	novel	2482	8	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_6	30.8399422959306	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAAAGTTGGTTTATCT	NA	False	NA	-11	True	NA	NA	NA	162376151	162361247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162371754_162371955_162373796_162374097_162375672
transcript_28363.known	chr19	-	1471	10	FSM	ENSMUSG00000024799.17	ENSMUST00000025713.12	1471	10	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_3	30.8704981223334	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTTCTTCTATCC	9961	False	NA	0	True	AATAAA	-15	NA	6117872	6112850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
transcript_28366.known	chr19	-	1498	10	FSM	ENSMUSG00000024799.17	ENSMUST00000113543.9	1498	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	72.9870612582197	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTTTTTCTTCTATC	9961	False	NA	-1	True	AATAAA	-14	NA	6117872	6112851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6113132_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
transcript_28367.known	chr19	-	2675	10	FSM	ENSMUSG00000024797.15	ENSMUST00000025711.13	2675	10	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_7	16.3026923475166	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAACAAGAGCAGCAGCTTT	987	False	NA	NA	False	TTTAAA	-7	NA	6127261	6117871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6118406_6118884_6118973_6119055_6119178_6119494_6119714_6119887_6120104_6120468_6121187_6121295_6121516_6121591_6121739_6126392_6126523_6126980
transcript_28373.nic	chr19	-	1292	9	NIC	ENSMUSG00000024799.17	novel	1471	10	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_8	79.8254932649965	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTTTTCTTCTATCC	9943	False	NA	0	True	AATAAA	-15	NA	6117890	6112850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_6113104_6113353_6113477_6113556_6113638_6113851_6114021_6114108_6114229_6116340_6116445_6116528_6116724_6116997_6117053_6117698
transcript_28383.nic	chr19	-	1289	8	NIC	ENSMUSG00000024792.10	novel	1287	8	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_7	201.730978669866	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGAAGCAGCTTTTTC	6656	False	NA	NA	False	AATAAA	-18	NA	6134757	6130791	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134675
transcript_28384.known	chr19	-	922	8	FSM	ENSMUSG00000024792.10	ENSMUST00000160977.8	922	8	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_7	88.3658905474556	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGGCTGCTGCTCCTGTTG	6468	False	NA	NA	False	NA	NA	NA	6134945	6131197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134824
transcript_28385.known	chr19	-	1287	8	FSM	ENSMUSG00000024792.10	ENSMUST00000025707.9	1287	8	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_7	142.172789382555	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGAAGCAGCTTTTTC	6440	False	NA	NA	False	AATAAA	-18	NA	6134973	6130791	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134091_6134381_6134492_6134893
transcript_2839.known	chr1	-	2482	8	FSM	ENSMUSG00000026694.20	ENSMUST00000159817.9	2482	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	33.4651814181089	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAAAGTTGGTTTATCT	NA	False	NA	-11	True	NA	NA	NA	162376091	162361247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_162362120_162363410_162363543_162364687_162364901_162366400_162366569_162369826_162370023_162371754_162371955_162373814_162374097_162375672
transcript_28392.known	chr19	-	1443	5	FSM	ENSMUSG00000024799.17	ENSMUST00000160354.8	1443	5	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_4	26.5988721565408	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAAACAGGATTGAATGAA	4068	False	NA	NA	False	AATATA	-18	NA	6117806	6115556	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6116445_6116528_6116724_6116997_6117053_6117152_6117350_6117698
transcript_28393.known	chr19	-	732	5	FSM	ENSMUSG00000024799.17	ENSMUST00000161528.2	732	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	104.193329920874	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTATGGTTTTGCTTTAA	9948	False	NA	-68	True	NA	NA	NA	6117885	6116216	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6116445_6116528_6116594_6116997_6117053_6117152_6117350_6117698
transcript_28395.known	chr19	-	718	4	FSM	ENSMUSG00000024799.17	ENSMUST00000160417.8	718	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	116.793264645983	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGAGAGAGCGCGCGCA	9953	False	NA	-10	True	TATAAA	-13	NA	6117880	6116158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6116445_6116528_6116724_6116997_6117053_6117698
transcript_28396.nic	chr19	-	1233	4	Fusion	ENSMUSG00000024799.17_ENSMUSG00000024797.15	novel	1443	5	NA	NA	-27	0	multi-exon	FALSE	canonical	3	213	junction_3	30.6847772609735	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGAGAGAGCGCGCGCA	9909	False	NA	-10	True	TATAAA	-13	NA	6117924	6116158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr19_-_6116445_6116528_6117053_6117152_6117350_6117698
transcript_28399.known	chr19	-	840	2	FSM	ENSMUSG00000024797.15	ENSMUST00000160590.2	840	2	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGGTAACTTTTGTTTC	1018	False	NA	1	True	ATTAAA	-20	NA	6127230	6125932	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6126523_6126980
transcript_2840.known	chr1	+	600	8	FSM	ENSMUSG00000026696.16	ENSMUST00000194810.6	600	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_5	110.137391007592	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATGATCACCTTTCCAAC	NA	False	NA	NA	False	ACTAAA	-38	NA	162398337	162422298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387_162409439_162415764_162415820_162417033_162417114_162420194_162420247_162422114
transcript_28400.known	chr19	-	1357	8	FSM	ENSMUSG00000024792.10	ENSMUST00000237738.2	1357	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	215.875247420772	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGAAGCAGCTTTTTC	6427	False	NA	NA	False	AATAAA	-18	NA	6134986	6130791	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6131245_6131876_6131995_6132210_6132358_6132428_6132502_6132614_6132809_6133978_6134079_6134381_6134492_6134824
transcript_28404.known	chr19	+	2024	6	FSM	ENSMUSG00000024791.11	ENSMUST00000025704.3	2024	6	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_5	42.0218990527558	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGCTTTTTATT	NA	False	NA	35	True	AATAAA	-20	NA	6135012	6141807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6135239_6135427_6135520_6136431_6136498_6136581_6136618_6140080_6140555_6140677
transcript_28407.known	chr19	+	1735	5	FSM	ENSMUSG00000024791.11	ENSMUST00000152528.2	1735	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	197.768014350147	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGCTTTTTATT	NA	False	NA	35	True	AATAAA	-20	NA	6135856	6141807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6135886_6136431_6136498_6136581_6136618_6140080_6140555_6140677
transcript_28408.known	chr19	+	1794	5	FSM	ENSMUSG00000024791.11	ENSMUST00000156961.8	1794	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	194.824921403808	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCAGACTGCTTTTTATT	NA	False	NA	35	True	AATAAA	-20	NA	6135780	6141807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6135869_6136431_6136498_6136581_6136618_6140080_6140555_6140677
transcript_28409.known	chr19	-	1442	2	FSM	ENSMUSG00000024790.9	ENSMUST00000113533.3	1442	2	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAACAGGAACTTTTAGAC	NA	False	NA	-9	True	AATAAA	-25	NA	6168680	6166029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6166618_6167826
transcript_2841.known	chr1	+	1461	8	FSM	ENSMUSG00000026696.16	ENSMUST00000135241.8	1461	8	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_7	26.2336440784092	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAAGTGAAGGCTGCAGGT	NA	False	NA	116	True	AATAAA	-21	NA	162398158	162422934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_162398350_162401866_162401986_162405440_162405488_162409387_162409439_162415764_162415866_162417033_162417114_162420194_162420247_162422114
transcript_28411.known	chr19	-	1635	8	FSM	ENSMUSG00000024787.15	ENSMUST00000025702.14	1635	8	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_5	6.49018096662888	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGTCCATTTGCTTATTA	NA	False	NA	1	True	NA	NA	NA	6178334	6169428	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6169985_6170515_6170774_6171408_6171553_6171812_6171961_6172069_6172186_6173859_6173981_6174182_6174219_6178078
transcript_28416.known	chr19	-	1286	5	FSM	ENSMUSG00000024944.7	ENSMUST00000025893.7	1286	5	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_1	48.4890451545501	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGCTGAGCCATTTGTGA	NA	False	NA	-8	True	AATAAA	-18	NA	6191578	6184412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6184832_6186008_6186090_6187507_6187671_6187759_6187871_6191066
transcript_28420.known	chr19	-	2305	4	FSM	ENSMUSG00000024944.7	ENSMUST00000134821.2	2305	4	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_1	55.8091987638836	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTTGTGAGTCACTGAC	NA	False	NA	1	True	AATAAA	-27	NA	6191170	6184403	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6184832_6186008_6187671_6187759_6187871_6191066
transcript_28423.known	chr19	+	1562	11	FSM	ENSMUSG00000024786.10	ENSMUST00000113528.2	1562	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	3.41906419945575	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACTGCCCTGAGGTTTA	8117	False	NA	10	True	AATAAA	-26	NA	6234496	6274255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6234613_6245693_6245811_6256247_6256294_6261633_6261710_6262157_6262284_6263026_6263059_6263328_6263427_6265175_6265240_6271702_6271776_6272677_6272787_6273550
transcript_28426.nnic	chr19	+	1576	10	NIC	ENSMUSG00000024786.10	novel	1562	11	NA	NA	-52	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	4.54062594260057	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACTGCCCTGAGGTTTA	7986	False	NA	10	True	AATAAA	-26	NA	6234365	6274255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_6234613_6256247_6256294_6261633_6261710_6262157_6262284_6263026_6263059_6263328_6263427_6265175_6265240_6271702_6271776_6272677_6272787_6273550
transcript_28427.known	chr19	+	1239	6	FSM	ENSMUSG00000024786.10	ENSMUST00000025699.9	1239	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	6.96850055607374	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAATTCTACTGCCCTGA	8038	False	NA	4	True	AATAAA	-20	NA	6234417	6274249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6234613_6245693_6245811_6256247_6256294_6271702_6271776_6272677_6272787_6273550
transcript_28428.known	chr19	-	2742	14	FSM	ENSMUSG00000024777.11	ENSMUST00000025695.10	2742	14	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_11	13.4199357135648	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTGCTTGCTTTATTGAG	NA	False	NA	0	True	AATAAA	-14	NA	6285902	6277794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6278562_6278971_6279074_6279251_6279380_6280185_6280306_6280415_6280467_6280531_6280586_6280936_6281046_6281145_6281206_6282299_6282431_6282557_6282651_6282796_6282899_6283806_6284004_6284662_6285130_6285541
transcript_28430.known	chr19	+	609	4	FSM	ENSMUSG00000024784.14	ENSMUST00000025698.14	609	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2.05480466765633	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCGCTCTTTATTAAATC	239	False	NA	NA	False	AATAAA	-16	NA	6276409	6277798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6276456_6276807_6276918_6277000_6277186_6277530
transcript_28431.known	chr19	+	3353	5	FSM	ENSMUSG00000024772.10	ENSMUST00000025684.4	3353	5	0	0	0	0	multi-exon	FALSE	canonical	3	357	junction_1	38.2687862363049	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCATGCTCCCTTGTCTTT	NA	False	NA	16	True	ATTAAA	-24	NA	6326754	6350126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6327409_6331247_6331346_6344243_6344657_6347562_6347728_6348103
transcript_28434.known	chr19	+	2639	10	FSM	ENSMUSG00000024947.18	ENSMUST00000079327.12	2639	10	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	99.9901229690114	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGATGTATGTATGTGTT	588	False	NA	21	True	GATAAA	-21	NA	6385042	6390919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6385113_6385474_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
transcript_28435.known	chr19	+	2663	10	FSM	ENSMUSG00000024947.18	ENSMUST00000113504.10	2663	10	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_1	106.997403914508	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATGTATGTATGTGTTTC	554	False	NA	23	True	GATAAA	-23	NA	6385008	6390921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6385101_6385474_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
transcript_28437.known	chr19	+	2975	9	FSM	ENSMUSG00000024947.18	ENSMUST00000056391.15	2975	9	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_3	26.9153766460735	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGATGTATGTATGTGTT	614	False	NA	21	True	GATAAA	-21	NA	6385068	6390919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389368_6389534_6389716
transcript_28438.known	chr19	+	2738	8	FSM	ENSMUSG00000024947.18	ENSMUST00000078137.12	2738	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	138.784225416615	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGATGTATGTATGTGTT	686	False	NA	21	True	GATAAA	-21	NA	6385140	6390919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6385936_6386754_6386964_6387182_6387312_6387508_6387550_6387630_6387719_6388312_6388450_6388855_6388992_6389716
transcript_2844.known	chr1	-	1342	5	FSM	ENSMUSG00000040225.16	ENSMUST00000182288.2	1342	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	1.78535710713571	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACACATGTAAATGTTTTA	3473	False	NA	NA	False	AATAAA	-19	NA	162568066	162547460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_162548176_162548998_162549109_162550678_162550857_162552272_162552439_162567893
transcript_28440.known	chr19	+	4353	13	FSM	ENSMUSG00000024949.18	ENSMUST00000131252.8	4353	13	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_12	157.964724437663	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCCATCCTCTGGTCT	602	False	NA	22	True	AATAAA	-14	NA	6413719	6428060	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6425687
transcript_28442.known	chr19	+	2649	13	FSM	ENSMUSG00000024949.18	ENSMUST00000113487.8	2649	13	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_12	242.538814190407	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCGGGTCCGTTTCTTTTC	834	False	NA	15	True	AATAAA	-15	NA	6413951	6427226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6414149_6415693_6415823_6418393_6418470_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424314_6424578_6424639_6424748_6424929_6426325
transcript_28448.known	chr19	+	3221	12	FSM	ENSMUSG00000024949.18	ENSMUST00000113485.9	3221	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	431.203485933256	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGTTTCTTTTCTTTTAA	834	False	NA	21	True	AATAAA	-21	NA	6413951	6427232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6414149_6415693_6415823_6421296_6421450_6421647_6421738_6422054_6422239_6422330_6422447_6422547_6422656_6423602_6423784_6424039_6424318_6424578_6424639_6424748_6424929_6425687
transcript_2845.nic	chr1	-	729	5	NIC	ENSMUSG00000040225.16	novel	670	6	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	13.8270568090248	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAGAAAAGGAAGC	3418	False	NA	NA	False	NA	NA	NA	162568121	162548113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_162548176_162549013_162549109_162550678_162550857_162552272_162552439_162567893
transcript_28454.known	chr19	+	2874	20	FSM	ENSMUSG00000032648.15	ENSMUST00000035269.15	2874	20	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_8	7.04005162408672	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTCTCTGTTGCAAAATA	NA	False	NA	14	True	AATAAA	-24	NA	6434428	6448489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6434752_6435714_6435817_6435895_6435975_6436053_6436158_6436403_6436536_6438092_6438205_6438296_6438380_6438766_6438911_6439189_6439283_6439485_6439633_6439802_6439967_6440360_6440476_6440969_6441072_6441362_6441511_6442708_6442768_6442877_6443020_6443745_6443954_6447607_6447743_6447895_6447963_6448074
transcript_28455.nic	chr19	+	1556	9	ISM	ENSMUSG00000032648.15	ENSMUST00000113483.2	2583	18	5751	-11	-2545	0	3prime_fragment	FALSE	canonical	2	12	junction_2	5.3619026473818	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTCTCTGTTGCAAAATA	NA	False	NA	14	True	AATAAA	-24	NA	6440195	6448489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_6440476_6440969_6441072_6441362_6441511_6442708_6442768_6442877_6443020_6443745_6443954_6447607_6447743_6447895_6447963_6448074
transcript_28456.known	chr19	+	919	7	FSM	ENSMUSG00000032946.17	ENSMUST00000149205.2	919	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_2	53.7297765572209	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATCATCAGCCTAAAACCCT	NA	False	NA	20	True	AATAAA	-22	NA	6458434	6465241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6458601_6458868_6458985_6463114_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
transcript_28458.known	chr19	+	573	5	FSM	ENSMUSG00000032946.17	ENSMUST00000113475.8	573	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	121.807994401024	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAATGAGTGAGGGTCATG	NA	False	NA	9	True	NA	NA	NA	6449485	6453663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6449548_6451750_6451894_6452501_6452605_6453053_6453117_6453461
transcript_2846.known	chr1	-	2538	5	FSM	ENSMUSG00000040124.6	ENSMUST00000045138.6	2538	5	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	10.1827059272082	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATGGTCTGTCATTTAA	NA	False	NA	-1	True	AATAAA	-18	NA	163231238	163212476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_163214267_163219978_163220120_163222159_163222262_163224380_163224739_163231091
transcript_28460.known	chr19	+	453	5	FSM	ENSMUSG00000032946.17	ENSMUST00000150713.8	453	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	119.445332684036	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCTGAACAGATCAAGGAG	NA	False	NA	NA	False	NA	NA	NA	6449897	6453508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6449995_6451750_6451894_6452501_6452605_6453053_6453117_6453461
transcript_28463.nic	chr19	+	779	5	ISM	ENSMUSG00000032946.17	ENSMUST00000149205.2	919	7	4542	-4	4542	0	3prime_fragment	FALSE	canonical	3	149	junction_1	9.57535900110278	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAGCCTAAAACCCTCTGA	NA	False	NA	24	True	AATAAA	-26	NA	6462976	6465245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_6463257_6463457_6463495_6463894_6464072_6464821_6464885_6465023
transcript_28465.known	chr19	+	535	4	FSM	ENSMUSG00000032946.17	ENSMUST00000113471.3	535	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	116.70761186258	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6451731	6453668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6451894_6452501_6452605_6453053_6453117_6453461
transcript_28466.nic	chr19	+	464	3	ISM	ENSMUSG00000032946.17	ENSMUST00000113467.2	409	4	1040	-26	-32	0	3prime_fragment	FALSE	canonical	3	21	junction_1	111.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGAGGGTCATGTCACT	NA	False	NA	14	True	NA	NA	NA	6451692	6453668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_6451894_6453060_6453117_6453461
transcript_28468.known	chr19	+	1933	4	FSM	ENSMUSG00000033768.18	ENSMUST00000140435.2	1933	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.29983164553722	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCTTGGCCCAGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	6523138	6532726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6523221_6523347_6523787_6531139_6531527_6531701
transcript_28469.known	chr19	-	3140	17	FSM	ENSMUSG00000118668.1	ENSMUST00000239527.1	3140	17	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_16	8.80961832317383	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGATCTGTGGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	6818004	6806577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6807508_6807682_6807847_6807954_6808115_6808358_6808554_6808641_6808816_6809135_6809230_6809318_6809453_6809623_6809753_6812468_6812634_6814694_6814846_6814947_6815052_6815123_6815205_6815422_6815531_6816619_6816736_6816827_6817047_6817701_6817774_6817860
transcript_28471.nic	chr19	-	1762	5	ISM	ENSMUSG00000118668.1	ENSMUST00000239527.1	3140	17	9050	0	7999	0	3prime_fragment	FALSE	canonical	3	46	junction_1	7.08431365765238	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGATCTGTGGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	6808954	6806577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_-_6807508_6807682_6807847_6807954_6808115_6808358_6808554_6808641
transcript_28474.known	chr19	+	957	5	FSM	ENSMUSG00000038812.17	ENSMUST00000088257.14	957	5	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_1	358.400875417458	352	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATACATTAAAATAGAGTCT	9265	False	NA	37	True	ATTAAA	-37	NA	6887065	6888417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6887224_6887321_6887631_6887730_6887833_6887951_6888042_6888119
transcript_28476.known	chr19	+	985	4	FSM	ENSMUSG00000038812.17	ENSMUST00000116551.10	985	4	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_1	23.6971634495683	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTCTCTTTGCAGCAA	9314	False	NA	16	True	ATTAAA	-16	NA	6887114	6888396	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6887631_6887730_6887833_6887951_6888042_6888119
transcript_28478.known	chr19	+	646	3	FSM	ENSMUSG00000038812.17	ENSMUST00000174786.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_1	28.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGTTTCTCTTTGCAGCAA	9731	False	NA	16	True	ATTAAA	-16	NA	6887531	6888396	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6887631_6887730_6887833_6887951
transcript_2848.known	chr1	+	4012	21	FSM	ENSMUSG00000026585.14	ENSMUST00000077642.12	4012	21	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_19	53.7530231707948	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAACTCTCATTTTTATG	NA	False	NA	18	True	ATTAAA	-25	NA	163607151	163744678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_163607472_163610553_163610686_163621517_163621673_163623553_163623610_163624820_163624963_163641937_163642038_163643393_163643519_163645401_163645501_163653256_163653436_163656701_163656865_163676229_163676331_163683604_163683714_163685040_163685154_163689523_163689690_163690279_163690406_163693007_163693107_163696269_163696356_163710951_163711142_163715774_163715875_163739640_163739707_163743293
transcript_28480.known	chr19	-	1262	6	FSM	ENSMUSG00000024953.18	ENSMUST00000025904.12	1262	6	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_5	11.3912246927185	542	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGTACAGGGTTGTCT	NA	False	NA	-9	True	AATAAA	-21	NA	6887474	6884073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6884320_6884433_6884496_6884609_6884649_6884909_6885042_6885349_6885485_6886826
transcript_28481.known	chr19	-	784	5	FSM	ENSMUSG00000050623.6	ENSMUST00000057716.6	784	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	4.76969600708473	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTGCGTGGCTGCTTGC	7390	False	NA	1	True	ATTAAA	-22	NA	6902748	6899790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6900029_6900668_6900736_6900890_6900968_6902161_6902475_6902659
transcript_28482.known	chr19	-	806	5	FSM	ENSMUSG00000050623.6	ENSMUST00000237380.2	806	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_4	16.5529453572468	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTGCGTGGCTGCTTGC	7411	False	NA	1	True	ATTAAA	-22	NA	6902727	6899790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6900029_6900668_6900736_6900890_6900968_6902161_6902518_6902659
transcript_28487.nnic	chr19	-	890	3	NNC	ENSMUSG00000024957.10	novel	600	2	NA	NA	275	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	0.5	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTGTGTTAAGTTAGTT	NA	False	NA	NA	False	TTTAAA	-4	NA	6911606	6906084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_6906560_6910070_6910337_6911457
transcript_28488.nic	chr19	-	930	3	NIC	ENSMUSG00000024957.10	novel	600	2	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	1.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATTGTGTTAAGTTAGTT	9915	False	NA	NA	False	TTTAAA	-4	NA	6911904	6906084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_6906560_6910070_6910337_6911715
transcript_28489.known	chr19	-	1858	7	FSM	ENSMUSG00000024958.14	ENSMUST00000166115.9	1858	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	2.47767812455308	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTCTGTTCCTTCTCACC	6813	False	NA	1	True	AATAAA	-32	NA	6918561	6915424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6915898_6916123_6916243_6916379_6916509_6916628_6916779_6916896_6917123_6917719_6917770_6917850
transcript_2849.known	chr1	+	3946	20	FSM	ENSMUSG00000026585.14	ENSMUST00000027877.7	3946	20	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_2	20.2454468052323	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCAACTCTCATTTTTATG	NA	False	NA	18	True	ATTAAA	-25	NA	163607151	163744678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_163607472_163610553_163610686_163621517_163621673_163623553_163623610_163624820_163624963_163641937_163642038_163643393_163643519_163645401_163645501_163653256_163653436_163656701_163656865_163676229_163676331_163683604_163683714_163685040_163685154_163689523_163689690_163690279_163690406_163693007_163693107_163696269_163696356_163710951_163711142_163715774_163715875_163743293
transcript_28491.known	chr19	+	1452	4	FSM	ENSMUSG00000024959.15	ENSMUST00000025910.13	1452	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	43.6526695123626	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTATCCTTCGTTTGGG	8681	False	NA	16	True	AATAAA	-21	NA	6919228	6929267	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6919809_6920234_6920415_6928007_6928199_6928766
transcript_28493.known	chr19	+	990	4	FSM	ENSMUSG00000024959.15	ENSMUST00000113423.10	990	4	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	15.9234278833282	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCGCGCCTCTATCCTTCG	9321	False	NA	10	True	AATAAA	-15	NA	6919868	6929261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6919993_6920234_6920415_6928007_6928199_6928766
transcript_28494.known	chr19	-	1717	8	FSM	ENSMUSG00000024958.14	ENSMUST00000025909.11	1717	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	9.66584561373558	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTCCTGTCACTCGTCT	6527	False	NA	-12	True	AATAAA	-19	NA	6918847	6915437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6915898_6916123_6916243_6916379_6916509_6916628_6916779_6916896_6917123_6917719_6917770_6917850_6918276_6918689
transcript_28495.known	chr19	-	4257	31	FSM	ENSMUSG00000024960.10	ENSMUST00000025912.10	4257	31	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_24	50.7714377272191	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGTGTACAGTGTAGTTT	4311	False	NA	-8	True	AATAAA	-16	NA	6947182	6931080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6931668_6931748_6931836_6932072_6932131_6932208_6932299_6932391_6932469_6932574_6932726_6933081_6933275_6933390_6933427_6933514_6933669_6934994_6935087_6935265_6935371_6935453_6935554_6936163_6936326_6936418_6936574_6937155_6937281_6937500_6937586_6937659_6937757_6939242_6939452_6940060_6940248_6940329_6940415_6940581_6940823_6941740_6941888_6941964_6942132_6942664_6942766_6942876_6942953_6943053_6943108_6943188_6943269_6943510_6943652_6943753_6943823_6943999_6944078_6946914
transcript_28496.known	chr19	-	4558	30	FSM	ENSMUSG00000024960.10	ENSMUST00000237726.2	4558	30	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_23	51.3241082764095	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCTGTGTACAGTGTAGTT	4365	False	NA	-9	True	AATAAA	-15	NA	6947128	6931081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6931668_6931748_6931836_6932072_6932131_6932208_6932299_6932391_6932469_6932574_6933275_6933390_6933427_6933514_6933669_6934994_6935087_6935265_6935371_6935453_6935554_6936163_6936326_6936418_6936574_6937155_6937281_6937500_6937586_6937659_6937757_6939242_6939452_6940060_6940248_6940329_6940415_6940581_6940823_6941740_6941888_6941964_6942132_6942664_6942766_6942876_6942953_6943053_6943108_6943188_6943269_6943510_6943652_6943753_6943823_6943999_6944078_6946914
transcript_28497.known	chr19	+	999	4	FSM	ENSMUSG00000056612.8	ENSMUST00000070850.8	999	4	0	0	0	0	multi-exon	FALSE	canonical	3	3100	junction_3	78.5295415043848	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCTTGGCTGGTCTTTTA	1580	False	NA	NA	False	AATAAA	-29	NA	6952335	6954692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6952875_6953911_6953996_6954225_6954259_6954349
transcript_2850.nic	chr1	+	584	3	ISM	ENSMUSG00000026585.14	ENSMUST00000077642.12	4012	21	17	123012	17	-123012	5prime_fragment	FALSE	canonical	3	150	junction_2	5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGGTAAGCAGAAGGAG	NA	False	NA	8	True	NA	NA	NA	163607168	163621666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_163607472_163610553_163610686_163621517
transcript_28503.known	chr19	-	664	6	FSM	ENSMUSG00000056629.17	ENSMUST00000177752.9	664	6	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_5	164.60571071503	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAGAGTGAGTCTGTATT	NA	False	NA	-6	True	TTTAAA	-32	NA	6957869	6955111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956510_6957761
transcript_28504.known	chr19	-	1526	6	FSM	ENSMUSG00000056629.17	ENSMUST00000238181.2	1526	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_5	269.092103191454	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCCAAGAGTGAGTCTGT	NA	False	NA	-9	True	TTTAAA	-29	NA	6957618	6955114	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956546_6956681
transcript_28508.known	chr19	-	642	6	FSM	ENSMUSG00000056629.17	ENSMUST00000070878.9	642	6	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_5	200.859752065963	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTGAGTCTGTATTTCT	NA	False	NA	-3	True	TTTAAA	-35	NA	6957808	6955108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6955303_6955378_6955415_6955757_6955805_6955925_6956039_6956340_6956546_6957761
transcript_28509.nnic	chr19	-	944	7	NNC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_6	72.0819364026491	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9931	False	NA	-4	True	AATAAA	-17	NA	6969954	6965278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969526_6969641_6969853
transcript_2851.known	chr1	-	3179	24	FSM	ENSMUSG00000041406.15	ENSMUST00000045876.8	3179	24	0	0	0	0	multi-exon	TRUE	canonical	2	170	junction_8	40.7878461455702	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTAAGCTTACCAGCTTGAA	NA	False	NA	NA	False	AATAGA	-29	NA	163822365	163781322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_163781909_163782905_163783026_163784396_163784478_163785061_163785167_163786856_163786971_163788145_163788242_163789532_163789656_163792038_163792225_163792303_163792394_163793976_163794029_163794642_163794726_163795722_163795910_163799415_163799531_163799775_163799922_163804312_163804378_163805648_163805730_163810233_163810373_163811892_163811978_163813573_163813737_163814455_163814597_163815174_163815280_163817273_163817363_163818288_163818329_163822178
transcript_28510.nnic	chr19	-	903	7	NNC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_6	60.0194412947449	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9909	False	NA	-4	True	AATAAA	-17	NA	6969976	6965278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969526_6969641_6969916
transcript_28512.known	chr19	-	840	6	FSM	ENSMUSG00000024963.13	ENSMUST00000179118.2	840	6	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_3	69.5097115516961	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9507	False	NA	-4	True	AATAAA	-17	NA	6969640	6965278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6965477_6965556_6965644_6966790_6966953_6967048_6967234_6968085_6968180_6969526
transcript_28514.nnic	chr19	-	783	6	NIC	ENSMUSG00000024963.13	novel	1074	6	NA	NA	-30	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_5	77.5035483058679	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9915	False	NA	-4	True	AATAAA	-17	NA	6969970	6965278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_6965477_6965556_6965644_6966790_6966956_6967048_6967234_6968085_6968180_6969916
transcript_28520.nnic	chr19	-	618	5	NIC	ENSMUSG00000024963.13	novel	840	6	NA	NA	-30	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	103.976860406535	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCGATTCGGTCCTTCAG	9915	False	NA	-4	True	AATAAA	-17	NA	6969970	6965278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_6965477_6965556_6965644_6967048_6967234_6968085_6968180_6969916
transcript_28525.known	chr19	-	1000	6	FSM	ENSMUSG00000037349.10	ENSMUST00000041686.10	1000	6	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	17.04582060213	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTTAGCTTCTGCTGCT	7045	False	NA	-3	True	AATAAA	-17	NA	6973405	6970385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6970571_6970800_6970895_6971029_6971128_6972038_6972138_6972609_6973104_6973375
transcript_28528.known	chr19	-	1073	6	FSM	ENSMUSG00000037349.10	ENSMUST00000180765.2	1073	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	58.0427428710946	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTTAGCTTCTGCTGCT	6965	False	NA	-3	True	AATAAA	-17	NA	6973485	6970385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6970571_6970800_6970895_6971029_6971128_6972038_6972138_6972609_6973104_6973382
transcript_28529.nic	chr19	-	1919	10	ISM	ENSMUSG00000024965.10	ENSMUST00000040772.9	2587	15	5277	21	5153	0	intron_retention	FALSE	canonical	3	13	junction_3	4.57043640026736	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATCTTTCTTCTTCCTCCT	7875	False	NA	-8	True	AATAAA	-17	NA	6991560	6976346	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_-_6976889_6977006_6977149_6979124_6979250_6979580_6979821_6979937_6980045_6980189_6980315_6980398_6980449_6980536_6980672_6980835_6980944_6991215
transcript_28531.known	chr19	+	1103	7	FSM	ENSMUSG00000047656.10	ENSMUST00000088223.7	1103	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	9.59166304662544	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGTGGTTCCTCATCCG	NA	False	NA	38	True	ATTAAA	-44	NA	6973539	6976414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876_6975934_6976025_6976137_6976259
transcript_28532.nnic	chr19	+	1110	7	NNC	ENSMUSG00000047656.10	novel	1103	7	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_5	14.8174071805952	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGTGGTTCCTCATCCG	NA	False	NA	38	True	ATTAAA	-44	NA	6973484	6976414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_6973893_6974063_6974146_6975300_6975471_6975559_6975735_6975876_6975934_6976073_6976137_6976259
transcript_28534.nnic	chr19	+	900	7	NNC	ENSMUSG00000047656.10	novel	1103	7	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	15.5848929700813	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTGTGGTTCCTCATCCG	NA	False	NA	38	True	ATTAAA	-44	NA	6973493	6976414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_6973745_6973823_6973893_6974063_6974146_6975559_6975735_6975876_6975934_6976025_6976137_6976259
transcript_28535.known	chr19	+	972	6	FSM	ENSMUSG00000047656.10	ENSMUST00000237234.2	972	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	13.8650640099496	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGATTTGTGGTTCCTCATC	NA	False	NA	36	True	ATTAAA	-42	NA	6973498	6976412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_6973893_6974063_6974146_6975559_6975735_6975876_6975934_6976025_6976137_6976259
transcript_28541.nnic	chr19	-	770	3	NNC	ENSMUSG00000024965.10	novel	2988	14	NA	NA	19369	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	9.5	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATCTTTCTTCTTCCTCCT	8108	False	NA	-8	True	AATAAA	-17	NA	6977344	6976346	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_6976889_6977006_6977149_6977258
transcript_28545.known	chr19	-	2108	14	FSM	ENSMUSG00000024966.10	ENSMUST00000025918.9	2108	14	0	0	0	0	multi-exon	FALSE	canonical	3	2912	junction_9	209.620169317304	1803	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACGGTCTCCAGTGACTTT	3763	False	NA	-8	True	AATAAA	-29	NA	7017335	6998069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_6998540_6999017_6999191_6999394_6999499_6999639_6999677_7002682_7002808_7003659_7003757_7005995_7006117_7006269_7006373_7006475_7006603_7009848_7010018_7011530_7011673_7012014_7012157_7012863_7013074_7017247
transcript_28566.known	chr19	+	1228	11	FSM	ENSMUSG00000036278.8	ENSMUST00000040261.7	1228	11	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_9	10.4383906805599	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACTGTCTGGGTCTGGC	8532	False	NA	6	True	AATAAA	-16	NA	7034177	7175422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_7034551_7042832_7042935_7043454_7043572_7162940_7162971_7173778_7173896_7174153_7174276_7174369_7174401_7174515_7174590_7174896_7174979_7175066_7175102_7175277
transcript_28576.known	chr19	-	1713	7	FSM	ENSMUSG00000024767.12	ENSMUST00000025679.11	1713	7	0	0	0	0	multi-exon	TRUE	canonical	3	1089	junction_1	76.373351955305	509	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTGGCCCATGCATC	NA	False	NA	2	True	AATAAA	-26	NA	7183681	7175566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_7176605_7176736_7176932_7177027_7177113_7177307_7177427_7181422_7181522_7181754_7181817_7183566
transcript_28586.known	chr19	-	550	2	FSM	ENSMUSG00000035885.6	ENSMUST00000039758.6	550	2	0	0	0	0	multi-exon	FALSE	canonical	3	12296	junction_1	0	9146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATCATGTCCTTCTGCAC	7366	False	NA	NA	False	AATAAA	-26	NA	7194981	7192517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_7192850_7194763
transcript_28587.known	chr19	-	3231	8	FSM	ENSMUSG00000024764.11	ENSMUST00000025675.11	3231	8	0	0	0	0	multi-exon	TRUE	canonical	3	441	junction_1	30.7431757816732	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTGGGATGGCATCCAG	NA	False	NA	-20	True	AATAAA	-16	NA	7218548	7203037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_7205457_7205716_7205795_7207086_7207171_7207312_7207472_7207552_7207649_7211468_7211522_7212427_7212524_7218302
transcript_28589.nic	chr19	+	2346	13	NIC	ENSMUSG00000024968.15	novel	2823	12	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	300.802676184904	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTCTTCCATGTGTGCTG	NA	False	NA	22	True	AATAAA	-17	NA	7244694	7252590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_7244790_7246215_7246454_7247129_7247187_7247465_7247547_7247918_7247972_7248062_7248225_7248334_7248460_7248557_7248628_7248703_7248920_7250464_7250543_7251197_7251256_7251384_7251615_7251707
transcript_28591.nic	chr19	-	2731	19	NIC	ENSMUSG00000024969.16	novel	2660	19	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	110.626498734355	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	3858	False	NA	NA	False	AAGAAA	-13	NA	7319227	7254123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_7254816_7255406_7255452_7257350_7257378_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7319131
transcript_28592.nic	chr19	-	2704	18	NIC	ENSMUSG00000024969.16	novel	3018	18	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	83.0892712064523	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAGAAAAAGAAAAAAA	3858	False	NA	NA	False	AAGAAA	-13	NA	7319227	7254123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_7254816_7255406_7255452_7258362_7258621_7259162_7259325_7260090_7260189_7260397_7260571_7260800_7260934_7261829_7261943_7262024_7262125_7262233_7262354_7263096_7263334_7263933_7263991_7264198_7264270_7264365_7264432_7264694_7264744_7267680_7267735_7267967_7268148_7319131
transcript_28594.known	chr19	-	2898	8	FSM	ENSMUSG00000024758.16	ENSMUST00000025667.14	2898	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	306.474621914362	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAGTCTGCAACTTTAT	8960	False	NA	-18	True	AATAAA	-17	NA	7460646	7403265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_7405241_7407115_7407175_7408350_7408398_7409330_7409401_7409816_7409956_7412295_7412504_7445175_7445233_7460303
transcript_28596.known	chr19	-	2762	7	FSM	ENSMUSG00000024758.16	ENSMUST00000088169.7	2762	7	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_1	35.2735343029618	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATCAGTCTGCAACTTTAT	9039	False	NA	-18	True	AATAAA	-17	NA	7460567	7403265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_7405241_7407115_7407175_7408350_7408398_7409330_7409401_7409816_7409956_7412295_7412504_7460303
transcript_286.known	chr1	+	2728	17	FSM	ENSMUSG00000025915.15	ENSMUST00000097826.6	2728	17	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	27.8654692226777	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGGTGTGAATGTGTG	9939	False	NA	NA	False	AATAAA	-11	NA	9918621	9970078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_9918774_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094_9959251_9961585_9961676_9968944
transcript_2860.known	chr1	+	4368	14	FSM	ENSMUSG00000026584.15	ENSMUST00000027876.11	4368	14	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_8	12.9505203112215	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTGTTCTTGTCTGT	NA	False	NA	NA	False	AATAAA	-30	NA	163757333	163782695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_163757756_163761047_163761263_163762200_163762387_163763986_163764101_163766308_163766366_163767449_163767553_163768675_163768788_163771392_163771471_163772364_163772505_163773732_163773918_163776710_163776883_163778136_163778296_163779505_163780186_163780950
transcript_28601.known	chr19	+	4368	13	FSM	ENSMUSG00000024759.15	ENSMUST00000025668.9	4368	13	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_6	6.18409698788397	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAAATAGTTCTGAGGAG	NA	False	NA	NA	False	NA	NA	NA	7471802	7513965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_7472027_7486712_7486928_7487347_7487492_7494242_7494348_7495910_7495962_7498151_7498209_7498474_7498568_7499433_7499573_7506306_7506435_7506972_7507030_7507884_7507957_7509380_7509813_7511314
transcript_28602.known	chr19	+	3523	5	FSM	ENSMUSG00000060675.14	ENSMUST00000025925.11	3523	5	0	0	0	0	multi-exon	TRUE	canonical	3	141	junction_1	31.8825971338597	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGTTGCTGTAGTCATGG	NA	False	NA	NA	False	NA	NA	NA	7534823	7565910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_7534930_7535296_7535361_7552301_7552405_7556318_7556588_7562929
transcript_28603.known	chr19	+	1901	5	FSM	ENSMUSG00000060675.14	ENSMUST00000136756.2	1901	5	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	71.8135606971274	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAGAAGGAGAAAAAACA	NA	False	NA	NA	False	NA	NA	NA	7534849	7564076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_7535168_7535296_7535361_7552301_7552405_7556318_7556588_7562929
transcript_28604.known	chr19	-	2470	10	FSM	ENSMUSG00000024972.17	ENSMUST00000159983.8	2470	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	5.03322295684717	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACTCATATGTTAGTGGT	NA	False	NA	NA	False	ATTAAA	-17	NA	7584558	7574024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_7575537_7576124_7576276_7578012_7578102_7578610_7578638_7579407_7579447_7580373_7580494_7581333_7581548_7581668_7581758_7584026_7584189_7584491
transcript_28605.known	chr19	-	2757	9	FSM	ENSMUSG00000024972.17	ENSMUST00000099729.10	2757	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	5.3253521010352	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTACTCATATGTTAGTGG	NA	False	NA	NA	False	ATTAAA	-16	NA	7584543	7574025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_7575537_7576124_7576276_7578012_7578102_7578610_7578638_7579407_7579447_7580373_7580494_7581333_7581548_7581668_7581758_7584026
transcript_28613.known	chr19	-	2813	10	FSM	ENSMUSG00000010095.14	ENSMUST00000170157.8	2813	10	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_9	923.220423635268	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATATGGATGAGTGATCAAA	9029	False	NA	NA	False	AATAAA	-17	NA	8700733	8684245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705_8691117_8700347
transcript_28617.known	chr19	-	1393	8	FSM	ENSMUSG00000010095.14	ENSMUST00000206598.2	1393	8	0	0	0	0	multi-exon	FALSE	canonical	3	2940	junction_7	103.964868477534	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCACCCCTGCCTCATGA	NA	False	NA	12	True	AATAAA	-2	NA	8690349	8684950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093
transcript_2862.known	chr1	+	4336	14	FSM	ENSMUSG00000026584.15	ENSMUST00000162234.2	4336	14	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	30.7224644598249	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAATGGTTACAATTATTT	NA	False	NA	NA	False	AATAAA	-13	NA	163757373	163782678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_163757756_163761047_163761263_163762261_163762387_163763986_163764101_163766308_163766366_163767449_163767553_163768589_163768788_163771392_163771471_163772364_163772505_163773732_163773918_163776710_163776883_163778136_163778296_163779505_163780186_163780950
transcript_28623.known	chr19	-	1819	9	FSM	ENSMUSG00000010095.14	ENSMUST00000010239.6	1819	9	0	0	0	0	multi-exon	FALSE	canonical	3	2610	junction_8	198.183902915953	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATACTGGGTGTTTTTGTCT	NA	False	NA	-18	True	TTTAAA	-26	NA	8691243	8684980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_8685459_8685557_8685642_8686368_8686510_8686593_8686775_8686913_8686973_8687078_8687148_8689197_8689293_8690093_8690268_8690705
transcript_28625.known	chr19	+	605	10	FSM	ENSMUSG00000108414.2	ENSMUST00000206155.2	605	10	0	0	0	0	multi-exon	FALSE	canonical	3	444	junction_1	203.637719952995	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8700838	8703807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8700871_8701504_8701554_8701766_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
transcript_28639.known	chr19	+	744	8	FSM	ENSMUSG00000108414.2	ENSMUST00000206135.2	744	8	0	0	0	0	multi-exon	FALSE	canonical	3	781	junction_1	116.047316176794	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTGTGATGGCTTATTT	NA	False	NA	26	True	AATAAA	-15	NA	8701521	8703807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8701554_8701766_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
transcript_28640.known	chr19	+	495	9	FSM	ENSMUSG00000108414.2	ENSMUST00000205825.2	495	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	343.013825340904	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTTACCACATTGTTAAC	NA	False	NA	31	True	AATAAA	-39	NA	8701510	8703709	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8701554_8701740_8701848_8702035_8702086_8702377_8702411_8702585_8702621_8702848_8702888_8703145_8703191_8703430_8703467_8703602
transcript_28645.known	chr19	+	1078	11	FSM	ENSMUSG00000042729.12	ENSMUST00000210512.2	1078	11	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_5	341.044410597799	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGATCCTGGACCTTTTG	963	False	NA	22	True	AATAAA	-15	NA	8713190	8717982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715211_8715227_8715516_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
transcript_28646.known	chr19	+	1204	11	FSM	ENSMUSG00000042729.12	ENSMUST00000049424.11	1204	11	0	0	0	0	multi-exon	FALSE	canonical	3	1012	junction_8	78.6635875103596	593	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGGACCTTTTGTGATGG	975	False	NA	28	True	AATAAA	-21	NA	8713202	8717988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8713270_8713350_8713458_8713539_8713662_8715017_8715094_8715211_8715359_8715516_8715619_8716629_8716731_8716810_8716867_8717182_8717329_8717459_8717517_8717765
transcript_28664.known	chr19	+	2251	11	FSM	ENSMUSG00000010110.18	ENSMUST00000176381.8	2251	11	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	18.8417090519942	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGGAAGCAGGTGAATT	6549	False	NA	NA	False	ATTAAA	-19	NA	8718776	8733433	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
transcript_28665.nic	chr19	+	2018	11	NIC	ENSMUSG00000010110.18	novel	2112	10	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	55.2485293921929	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6934	False	NA	12	True	NA	NA	NA	8719161	8733006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_8719519_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
transcript_28667.nnic	chr19	+	1983	11	NNC	ENSMUSG00000010110.18	novel	2112	10	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	2	19	junction_1	54.6512579910106	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6936	False	NA	12	True	NA	NA	NA	8719163	8733006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_8719486_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
transcript_28668.known	chr19	+	995	10	FSM	ENSMUSG00000010110.18	ENSMUST00000177373.8	995	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	63.2129460095784	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGTGGCTACTATTGCC	6615	False	NA	NA	False	NA	NA	NA	8718842	8732487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8718940_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
transcript_28670.known	chr19	+	1720	11	FSM	ENSMUSG00000010110.18	ENSMUST00000175872.8	1720	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	60.8157874239905	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTATTTCCTCCCAATTA	6624	False	NA	-28	True	NA	NA	NA	8718851	8732966	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8718940_8719617_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726264_8727029_8727137_8727269_8727392_8732272
transcript_28671.known	chr19	+	2112	10	FSM	ENSMUSG00000010110.18	ENSMUST00000073430.14	2112	10	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_5	5.51764845241562	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTTGATGTCATTTCT	6939	False	NA	12	True	NA	NA	NA	8719166	8733006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8719862_8720217_8720289_8720443_8720500_8720716_8720788_8725824_8725942_8726018_8726076_8726170_8726253_8727029_8727137_8727269_8727392_8732272
transcript_28675.known	chr19	+	2326	21	FSM	ENSMUSG00000010097.16	ENSMUST00000010241.14	2326	21	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_4	71.7857924661976	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGGCTTGTTTCCCTCA	8569	False	NA	47	True	GATAAA	-26	NA	8734436	8748286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8742396_8744160_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364_8746548_8747623_8747685_8747937
transcript_28676.known	chr19	+	4042	20	FSM	ENSMUSG00000010097.16	ENSMUST00000184970.9	4042	20	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_4	65.017278760312	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTTTGTGTCCCATTACT	8603	False	NA	32	True	GATAAA	-11	NA	8734470	8748271	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8734624_8739675_8739860_8740046_8740201_8740896_8740981_8741060_8741166_8741279_8741361_8741443_8741514_8741624_8741714_8741862_8741971_8742285_8744198_8744443_8744513_8744591_8744648_8744730_8744839_8744936_8744996_8745093_8745210_8745337_8745381_8745952_8746026_8746364_8746548_8747623_8747685_8747937
transcript_28679.known	chr19	+	748	2	FSM	ENSMUSG00000117924.2	ENSMUST00000010248.4	748	2	0	0	0	0	multi-exon	FALSE	canonical	3	838	junction_1	0	248	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCATTCTGTCCTCTCTCTC	6519	False	NA	NA	False	AATAAA	-38	NA	8748359	8749839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8748680_8749411
transcript_2868.known	chr1	+	1419	2	FSM	ENSMUSG00000041396.14	ENSMUST00000111490.2	1419	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGACTGTTCAATTTCT	NA	False	NA	9	True	AATAAA	-16	NA	163822457	163824812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_163822547_163823482
transcript_28681.nnic	chr19	-	807	5	NNC	ENSMUSG00000118346.2	novel	818	5	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	97.0090201991547	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATGGATTTCTTGATGT	5061	False	NA	-4	True	AATATA	-17	NA	8751844	8749888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_8750148_8750391_8750471_8750653_8750789_8750868_8751057_8751698
transcript_28683.known	chr19	-	775	5	FSM	ENSMUSG00000118346.2	ENSMUST00000237634.2	775	5	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_4	80.9073544246751	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATGGATTTCTTGATGT	5074	False	NA	-4	True	AATATA	-17	NA	8751831	8749888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8750987_8751698
transcript_28684.known	chr19	-	818	5	FSM	ENSMUSG00000118346.2	ENSMUST00000010249.7	818	5	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	40.2833712591188	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAATATATTACTTTTC	5074	False	NA	-31	True	NA	NA	NA	8751831	8749915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8751057_8751698
transcript_28685.nnic	chr19	-	856	5	NNC	ENSMUSG00000118346.2	novel	818	5	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_4	105.570770102335	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5075	False	NA	-5	True	AATATA	-16	NA	8751830	8749889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_8750199_8750391_8750471_8750653_8750789_8750868_8751070_8751698
transcript_28687.nnic	chr19	-	655	4	NIC	ENSMUSG00000118346.2	novel	775	5	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_3	106.565577097965	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5075	False	NA	-5	True	AATATA	-16	NA	8751830	8749889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_8750199_8750391_8750471_8750653_8750789_8751698
transcript_28689.nnic	chr19	-	638	4	NIC	ENSMUSG00000118346.2	novel	775	5	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	101.226917807908	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5075	False	NA	-5	True	AATATA	-16	NA	8751830	8749889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_8750199_8750391_8750471_8750868_8750987_8751698
transcript_2869.known	chr1	+	1513	2	FSM	ENSMUSG00000041396.14	ENSMUST00000045694.14	1513	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGACTGTTCAATTTCT	NA	False	NA	9	True	AATAAA	-16	NA	163822457	163824812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_163822641_163823482
transcript_28690.nnic	chr19	-	722	4	NIC	ENSMUSG00000118346.2	novel	818	5	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	96.6885032807245	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCATGGATTTCTTGATG	5061	False	NA	-5	True	AATATA	-16	NA	8751844	8749889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_8750199_8750391_8750471_8750868_8751057_8751698
transcript_28695.nnic	chr19	-	2233	13	NIC	ENSMUSG00000003680.17	novel	2065	12	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_11	69.7284415110187	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTGTCTATGCTCGTG	9928	False	NA	-3	True	AATAAA	-14	NA	8763653	8751855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8762996_8763192_8763573
transcript_28697.known	chr19	-	2065	12	FSM	ENSMUSG00000003680.17	ENSMUST00000176610.9	2065	12	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_4	26.5722156514676	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTGTCTATGCTCGTG	9901	False	NA	-3	True	AATAAA	-14	NA	8763680	8751855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8763573
transcript_28698.known	chr19	-	2006	11	FSM	ENSMUSG00000003680.17	ENSMUST00000177056.8	2006	11	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_10	58.7504042539283	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGACGTGTCTATGCTCG	9901	False	NA	-5	True	AATAAA	-12	NA	8763680	8751857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8756214_8756290_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8763573
transcript_28699.nic	chr19	-	1992	11	NIC	ENSMUSG00000003680.17	novel	2065	12	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_4	60.2213417319807	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTGTCTATGCTCGTG	9899	False	NA	-3	True	AATAAA	-14	NA	8763682	8751855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_8752655_8752753_8752883_8755450_8755584_8755876_8756098_8759364_8759460_8759719_8759771_8759907_8760059_8760667_8760755_8761198_8761359_8762485_8762543_8763573
transcript_28702.known	chr19	-	890	8	FSM	ENSMUSG00000071662.5	ENSMUST00000096261.5	890	8	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_5	79.6292429106959	1341	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGTTTGGTTTTATGT	NA	False	NA	-1	True	ATTAAA	-17	NA	8775941	8770490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_8770769_8770989_8771024_8771499_8771572_8771665_8771732_8771843_8771895_8774599_8774760_8775587_8775698_8775822
transcript_2871.known	chr1	+	1909	6	FSM	ENSMUSG00000026578.7	ENSMUST00000027867.7	1909	6	0	0	0	0	multi-exon	FALSE	canonical	2	28	junction_1	8.97552226892675	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGTGTCATCTTGTAG	NA	False	NA	20	True	AATAAA	-20	NA	164103153	164115416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_164103331_164105742_164105884_164107435_164108384_164109959_164110107_164113809_164113965_164115075
transcript_28712.nnic	chr19	+	1946	2	NNC	ENSMUSG00000071661.8	novel	2004	2	NA	NA	-86	10	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTGTTGGCTGGTTTCTT	5342	False	NA	22	True	CATAAA	-27	NA	8779832	8782220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_8779896_8780337
transcript_28713.known	chr19	+	2004	2	FSM	ENSMUSG00000071661.8	ENSMUST00000172175.3	2004	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGAACTGGTGTTGG	5428	False	NA	12	True	CATAAA	-17	NA	8779918	8782210	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8780050_8780337
transcript_28719.nnic	chr19	-	1192	5	NNC	ENSMUSG00000071660.11	novel	3509	4	NA	NA	-29	1007	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	101.019800039398	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCCTCTTCAGCTGTCAC	1856	False	NA	-11	True	AATAAA	-15	NA	8796726	8787492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_8787707_8788998_8789203_8793217_8793401_8795799_8796049_8796384
transcript_28721.known	chr19	-	3509	4	FSM	ENSMUSG00000071660.11	ENSMUST00000096751.11	3509	4	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_3	24.7116706571342	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAATGCATCTTAGAAATT	1885	False	NA	-13	True	AATAAA	-11	NA	8796697	8786438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_8789203_8793217_8793401_8795799_8796049_8796384
transcript_28726.known	chr19	-	600	2	FSM	ENSMUSG00000071660.11	ENSMUST00000148090.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAACCCTGTATCAAAAAGC	1986	False	NA	NA	False	NA	NA	NA	8796596	8795660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_8796049_8796384
transcript_28727.known	chr19	+	5118	14	FSM	ENSMUSG00000071659.5	ENSMUST00000096753.5	5118	14	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	16.0266050992067	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCCTATCTCCTGTGGCT	NA	False	NA	15	True	AATAAA	-18	NA	8797373	8811507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8798178_8800167_8800304_8800593_8800671_8800893_8801034_8801584_8801676_8801769_8801883_8802223_8802488_8802634_8802758_8803335_8803465_8804007_8804177_8807113_8807315_8808251_8808326_8808588_8808697_8808818
transcript_28729.known	chr19	+	1684	12	FSM	ENSMUSG00000071657.13	ENSMUST00000159634.8	1684	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	50.3060057535483	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGTGTGGACATCCG	NA	False	NA	14	True	AATAAA	-14	NA	8815092	8826031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8815229_8816939_8817149_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
transcript_28732.known	chr19	+	1795	11	FSM	ENSMUSG00000071657.13	ENSMUST00000160556.8	1795	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	47.8256207487158	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTTGTGTGGACATCC	NA	False	NA	13	True	AATAAA	-13	NA	8816691	8826030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8817149_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
transcript_28733.nnic	chr19	+	1395	11	NNC	ENSMUSG00000071657.13	novel	1388	11	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_6	67.9826448441071	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTTGTGTGGACATCCG	NA	False	NA	14	True	AATAAA	-14	NA	8817866	8826031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_8817933_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825516_8825827
transcript_28734.known	chr19	+	1388	11	FSM	ENSMUSG00000071657.13	ENSMUST00000086058.13	1388	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	60.1671837466239	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTTGTGTGGACATCC	NA	False	NA	13	True	AATAAA	-13	NA	8817882	8826030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8817933_8818471_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
transcript_28735.nic	chr19	+	1203	4	ISM	ENSMUSG00000071657.13	ENSMUST00000171649.8	1962	12	120	5276	-100	3164	5prime_fragment	FALSE	canonical	3	57	junction_1	48.787521173167	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTAATGTCATTTTTTAT	NA	False	NA	NA	False	AATAAA	-18	NA	8814950	8820771	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_8815229_8816939_8817149_8818471_8818789_8820372
transcript_28737.known	chr19	-	1643	3	FSM	ENSMUSG00000071658.6	ENSMUST00000096259.6	1643	3	0	0	0	0	multi-exon	TRUE	canonical	3	189	junction_2	8	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTGGGGCTTTTTTATT	4762	False	NA	NA	False	AATAAA	-14	NA	8816558	8814296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_8815636_8815917_8816018_8816354
transcript_28738.known	chr19	+	1911	10	FSM	ENSMUSG00000071657.13	ENSMUST00000162071.8	1911	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	49.7082848250361	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCTTGTGTGGACATCC	NA	False	NA	13	True	AATAAA	-13	NA	8817898	8826030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8818789_8820372_8820455_8822534_8822679_8823553_8823689_8823829_8823928_8824769_8824912_8825030_8825098_8825277_8825347_8825444_8825526_8825827
transcript_28739.known	chr19	+	1033	10	FSM	ENSMUSG00000071655.13	ENSMUST00000166407.9	1033	10	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	323.787653323045	962	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTATATGCCTGGCTC	5912	False	NA	25	True	AATAAA	-13	NA	8848922	8853020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8848950_8849034_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
transcript_2874.known	chr1	+	1740	14	FSM	ENSMUSG00000026575.16	ENSMUST00000193683.6	1740	14	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	20.0017750691572	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTTGGTTTTATTTCA	NA	False	NA	NA	False	AATAAA	-20	NA	164135240	164264869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_164135324_164135628_164135820_164140421_164140508_164155861_164155970_164160180_164160348_164168297_164168409_164170782_164170834_164172787_164172996_164175342_164175449_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
transcript_28748.known	chr19	+	1291	9	FSM	ENSMUSG00000071655.13	ENSMUST00000238036.2	1291	9	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_4	107.257575490032	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGAGGGGCTGGAGAG	5946	False	NA	3	True	ATTAAA	-16	NA	8848956	8853227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8849121_8849222_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
transcript_28749.known	chr19	+	1127	8	FSM	ENSMUSG00000071655.13	ENSMUST00000096255.7	1127	8	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_3	101.556257657457	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCCTGGCTCCTTCCAGA	6013	False	NA	33	True	AATAAA	-21	NA	8849023	8853028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8849277_8849371_8849479_8849581_8849652_8850877_8851070_8851158_8851211_8851502_8851620_8852523_8852717_8852885
transcript_28750.known	chr19	-	821	2	FSM	ENSMUSG00000071654.7	ENSMUST00000096253.7	821	2	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_1	0	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTGGAAAGACCATCTC	NA	False	NA	-8	True	AATGAA	-25	NA	8858287	8857377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_8857981_8858069
transcript_28753.known	chr19	+	500	5	FSM	ENSMUSG00000071653.10	ENSMUST00000185488.7	500	5	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_2	1592.05511839258	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGTCAACAGCACTGAGAAAG	NA	False	NA	NA	False	NA	NA	NA	8866278	8867910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8866329_8866487_8866613_8867000_8867092_8867366_8867465_8867774
transcript_28755.known	chr19	+	806	4	FSM	ENSMUSG00000071653.10	ENSMUST00000096251.10	806	4	0	0	0	0	multi-exon	FALSE	canonical	3	2965	junction_2	196.086715511276	839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCCCAACATTTGCCAGGC	NA	False	NA	NA	False	NA	NA	NA	8866216	8868245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8866329_8866487_8866613_8867366_8867465_8867774
transcript_2876.nic	chr1	+	1805	14	NIC	ENSMUSG00000026575.16	novel	1740	14	NA	NA	-68	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_2	27.275061761302	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTTGGTTTTATTTCA	NA	False	NA	NA	False	AATAAA	-20	NA	164135172	164264869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_164135324_164135628_164135820_164140424_164140508_164155861_164155970_164160180_164160348_164168297_164168409_164170782_164170834_164172787_164172996_164175342_164175449_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
transcript_28760.known	chr19	+	3274	2	FSM	ENSMUSG00000071652.9	ENSMUST00000096249.7	3274	2	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCCAGTGTTTCTATCTG	NA	False	NA	20	True	AATAAA	-21	NA	8870368	8875252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8870513_8872122
transcript_28761.known	chr19	-	148	1	FSM	ENSMUSG00000070167.3	ENSMUST00000093658.3	148	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCGTGCAGAAATGTAGCT	NA	False	NA	-9	True	NA	NA	NA	8866049	8865901	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_8865900_8866000
transcript_28762.known	chr19	+	784	3	FSM	ENSMUSG00000071653.10	ENSMUST00000186647.7	784	3	0	0	0	0	multi-exon	FALSE	canonical	3	2965	junction_1	112.5	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGGATGAAGTGCAGCAGGG	NA	False	NA	32	True	AATAAA	-21	NA	8866262	8868110	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8866613_8867366_8867465_8867774
transcript_28763.known	chr19	+	830	4	FSM	ENSMUSG00000071653.10	ENSMUST00000190843.2	830	4	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	1438.49141657347	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCGTGTGGGATGAAGTGCAG	NA	False	NA	27	True	AATAAA	-16	NA	8866302	8868105	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8866613_8867000_8867092_8867366_8867465_8867774
transcript_28764.known	chr19	+	3860	25	FSM	ENSMUSG00000071650.7	ENSMUST00000096246.5	3860	25	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_6	273.686404967234	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATGTCTGAATTATACT	1893	False	NA	-56	True	GATAAA	-42	NA	8875464	8894036	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8885214_8885281_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
transcript_28766.known	chr19	+	3788	24	FSM	ENSMUSG00000071650.7	ENSMUST00000235274.2	3788	24	0	0	0	0	multi-exon	FALSE	canonical	3	708	junction_5	142.157557894544	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGATGTCTGAATTATACT	1899	False	NA	-56	True	GATAAA	-42	NA	8875470	8894036	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8875524_8879627_8879733_8879885_8879995_8882298_8882427_8884578_8884759_8886041_8886112_8886284_8886373_8886454_8886552_8886796_8886978_8887829_8887984_8888071_8888308_8888398_8888526_8888640_8888721_8888959_8889104_8889227_8889325_8889837_8889940_8890074_8890319_8891664_8891730_8891905_8891983_8892065_8892141_8892288_8892403_8892521_8892635_8892767_8892869_8892988
transcript_28769.known	chr19	+	1603	5	FSM	ENSMUSG00000071649.7	ENSMUST00000096243.7	1603	5	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_3	18.060661671157	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGGCTTCATGGTTTCCTTC	4712	False	NA	19	True	AATAAA	-16	NA	8897737	8904600	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8898013_8899169_8899345_8902901_8903263_8903445_8903737_8904099
transcript_28770.known	chr19	+	909	5	FSM	ENSMUSG00000071649.7	ENSMUST00000237071.2	909	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	75.1644031440415	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATTGAGGTGTGATGGC	4822	False	NA	NA	False	NA	NA	NA	8897847	8904182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8898013_8899169_8899345_8903067_8903263_8903445_8903737_8904099
transcript_28771.known	chr19	-	1517	3	FSM	ENSMUSG00000071648.5	ENSMUST00000096242.5	1517	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGTTCTCCCGCTCTCT	NA	False	NA	NA	False	AATAAA	-16	NA	8906720	8904754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_8905252_8905341_8905589_8905947
transcript_28773.known	chr19	+	3135	18	FSM	ENSMUSG00000071646.10	ENSMUST00000096240.3	3135	18	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_3	72.954410564141	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTCAGCTATTCTGTGTG	3469	False	NA	20	True	AATAAA	-24	NA	8919238	8929667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8919747_8920828_8920897_8921376_8921471_8923119_8923238_8923369_8923434_8923630_8923749_8924011_8924115_8924400_8924501_8924615_8924805_8924888_8924964_8925090_8925150_8925388_8925487_8925620_8925761_8926314_8926544_8927663_8927754_8928275_8928395_8928499_8928649_8928853
transcript_28779.known	chr19	+	2753	9	FSM	ENSMUSG00000071645.7	ENSMUST00000096239.7	2753	9	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_7	18.3234822018087	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTTCTTTTGCATAC	1357	False	NA	11	True	AATAAA	-26	NA	8931210	8943574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8931386_8932750_8932942_8936450_8936767_8937106_8937208_8939707_8940187_8941383_8941494_8941627_8941739_8941924_8942018_8942397
transcript_2878.nnic	chr1	+	1652	13	NIC	ENSMUSG00000026575.16	novel	1740	14	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	36.5509537799251	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTTGGTTTTATTTCA	NA	False	NA	NA	False	AATAAA	-20	NA	164135242	164264869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_164135324_164135628_164135820_164155861_164155970_164160180_164160348_164168297_164168409_164170782_164170834_164172787_164172996_164175342_164175449_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
transcript_28781.known	chr19	+	1858	5	FSM	ENSMUSG00000071645.7	ENSMUST00000236564.2	1858	5	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	17.1955662890176	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTGTCCGCATCTCA	1440	False	NA	NA	False	AATAAA	-24	NA	8931293	8940865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8931386_8932750_8932942_8936450_8936767_8937106_8937208_8939707
transcript_28787.known	chr19	+	1864	10	FSM	ENSMUSG00000071644.11	ENSMUST00000052248.8	1864	10	0	0	0	0	multi-exon	FALSE	canonical	3	5201	junction_1	1272.81743475733	220	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTTTTCTGTCATAGC	843	False	NA	NA	False	AAGAAA	-37	NA	8944404	8955843	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8944590_8945579_8945739_8946525_8946590_8946727_8946871_8947207_8947352_8949870_8950001_8950267_8950473_8954681_8954855_8954948_8955074_8955307
transcript_28790.nic	chr19	+	1168	7	NIC	ENSMUSG00000069833.14	novel	989	6	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	26.9222130508537	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGTTCTGTGATCACC	NA	False	NA	13	True	AATAAA	-14	NA	8966612	9054278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_9014522_9014623_9022988_9023081_9053939
transcript_28791.nnic	chr19	+	1972	7	NNC	ENSMUSG00000069833.14	novel	1188	7	NA	NA	-35	942	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	27.7533781727558	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAATTGTTATCTTAATTT	NA	False	NA	NA	False	AATAAA	-21	NA	8966612	9055220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_9014522_9014623_9053939_9054625_9054670
transcript_28792.known	chr19	+	830	6	FSM	ENSMUSG00000069833.14	ENSMUST00000092955.11	830	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	17.6703140888893	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGAGGTGGCTTTTTG	NA	False	NA	NA	False	NA	NA	NA	8966658	9054078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_9014522_9014623_9053939
transcript_28794.nnic	chr19	+	976	5	NIC	ENSMUSG00000069833.14	novel	830	6	NA	NA	-35	0	combination_of_known_splicesites	FALSE	canonical	1	5	junction_4	30.5563004959697	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTGTTCTGTGATCACC	NA	False	NA	13	True	AATAAA	-14	NA	8966612	9054278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_8966794_8977025_8977137_8977463_8977621_8978039_8978228_9053939
transcript_28796.known	chr19	-	4195	7	FSM	ENSMUSG00000024654.9	ENSMUST00000049948.6	4195	7	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_3	31.0344790336311	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTGCTCCTTGTCACAG	NA	False	NA	NA	False	NA	NA	NA	9113000	9087231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_9090573_9091547_9091659_9093865_9093985_9095892_9096051_9096551_9096695_9112150_9112352_9112878
transcript_28800.nnic	chr19	+	2526	2	NNC	ENSMUSG00000100141.2	novel	1112	2	NA	NA	-298	1075	intron_retention	FALSE	canonical	3	11	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGGCCTATGATCCATC	NA	False	NA	NA	False	NA	NA	NA	9584169	9586815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_9584206_9584325
transcript_28802.nic	chr19	-	3129	19	NIC	ENSMUSG00000024660.10	novel	3236	18	NA	NA	13	-60	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	145.134516148908	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGAATGACTTTTAGTTTC	NA	False	NA	-26	True	AATAAA	-18	NA	9876902	9849765	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855161_9855491_9855613_9855682_9855793_9860555_9860568_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636_9871374_9872202_9872317_9872684_9872836_9876702
transcript_28804.known	chr19	-	3236	18	FSM	ENSMUSG00000024660.10	ENSMUST00000025562.9	3236	18	0	0	0	0	multi-exon	FALSE	canonical	3	363	junction_14	47.6890156590894	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGCAGCAGTATGTCTTG	NA	False	NA	-3	True	NA	NA	NA	9876915	9849659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855161_9855491_9855613_9855682_9855793_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636_9871374_9872202_9872317_9872684_9872836_9876702
transcript_28806.known	chr19	-	3449	17	FSM	ENSMUSG00000024660.10	ENSMUST00000238129.2	3449	17	0	0	0	0	multi-exon	FALSE	canonical	3	363	junction_13	49.1273854382665	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACTAGAGGCTTCATTG	NA	False	NA	-31	True	AATAAA	-33	NA	9876825	9849687	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_9850238_9851583_9851735_9852179_9852288_9852461_9852541_9853953_9854181_9855040_9855613_9855682_9855793_9861062_9861198_9861268_9861384_9861801_9861854_9862836_9862952_9863070_9863129_9864038_9864091_9870636_9871374_9872202_9872317_9872684_9872836_9876702
transcript_28809.known	chr19	+	929	4	FSM	ENSMUSG00000024661.8	ENSMUST00000025563.8	929	4	0	0	0	0	multi-exon	FALSE	canonical	3	5325	junction_2	217.148694574836	5271	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTGTGATTGAGGAT	4869	False	NA	23	True	AATAAA	-21	NA	9960009	9962462	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_9960348_9961544_9961692_9961923_9962050_9962144
transcript_2881.known	chr1	+	687	6	FSM	ENSMUSG00000026575.16	ENSMUST00000192710.2	687	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	52.9550752997293	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAACAAGTGACTTTGGTT	7384	False	NA	NA	False	AATAAA	-12	NA	164200837	164264861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_164200904_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
transcript_28811.known	chr19	+	2305	10	FSM	ENSMUSG00000024663.21	ENSMUST00000149967.9	2305	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	15.1787700993327	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCGGCAGTGGCCTTCAC	818	False	NA	8	True	AATAAA	-23	NA	9992407	10012825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_9992650_10003893_10004150_10004747_10004844_10004923_10005002_10005648_10005868_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
transcript_28812.known	chr19	+	5146	10	FSM	ENSMUSG00000024663.21	ENSMUST00000113161.10	5146	10	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	9.36897954837013	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATTAGGGATTTTTTTT	3967	False	NA	NA	False	NA	NA	NA	9995556	10015741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_9995724_10003893_10004150_10004747_10004844_10004923_10005002_10005648_10005868_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
transcript_28814.known	chr19	+	2004	9	FSM	ENSMUSG00000024663.21	ENSMUST00000117641.8	2004	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	8.51377560192891	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGCTAGGCGGCAGTGGC	3968	False	NA	2	True	AATAAA	-17	NA	9995557	10012819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_9995724_10003893_10004150_10004747_10004844_10004923_10005002_10007513_10007643_10007732_10007846_10009716_10009817_10011107_10011175_10011820
transcript_28815.known	chr19	-	3150	12	FSM	ENSMUSG00000024665.9	ENSMUST00000025567.9	3150	12	0	0	0	0	multi-exon	TRUE	canonical	3	359	junction_1	25.8738196920081	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCCTGTAGTTCAGCAAG	9871	False	NA	-4	True	AATAAA	-25	NA	10079110	10040128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10041679_10042049_10042176_10042965_10043046_10043615_10043713_10043878_10043977_10047635_10047713_10047927_10047989_10059928_10060055_10066065_10066168_10066271_10066470_10069104_10069216_10078586
transcript_28817.known	chr19	+	3460	12	FSM	ENSMUSG00000010663.6	ENSMUST00000010807.6	3460	12	0	0	0	0	multi-exon	TRUE	canonical	3	652	junction_7	60.0436480355873	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTTGTTATTCATTTGA	NA	False	NA	18	True	AATAAA	-19	NA	10160251	10174238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118_10164248_10168803_10168865_10170275_10170353_10171064_10171163_10171359_10171457_10171681_10171762_10171852_10171979_10172234
transcript_28819.known	chr19	+	1310	5	FSM	ENSMUSG00000010663.6	ENSMUST00000237221.2	1310	5	0	0	0	0	multi-exon	FALSE	canonical	3	747	junction_1	26.688012290165	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAAAAAATCACA	NA	False	NA	NA	False	NA	NA	NA	10160348	10164737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_10160629_10162290_10162402_10163048_10163247_10163741_10163844_10164118
transcript_2882.nnic	chr1	+	1494	6	NNC	ENSMUSG00000026575.16	novel	2536	16	NA	NA	4049	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	56.5133612520084	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTTGGTTTTATTTCA	NA	False	NA	NA	False	AATAAA	-20	NA	164204886	164264869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_164205752_164206927_164206993_164208209_164208279_164213268_164213371_164230538_164230647_164264584
transcript_28824.known	chr19	+	981	5	FSM	ENSMUSG00000036372.15	ENSMUST00000153854.8	981	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	1802.63896829066	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATGTCCATTCTTAGGG	3977	False	NA	33	True	AATAAA	-22	NA	10181377	10185188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_10181629_10183113_10183489_10183787_10183898_10184527_10184665_10185080
transcript_28829.known	chr19	+	606	4	FSM	ENSMUSG00000036372.15	ENSMUST00000040372.14	606	4	0	0	0	0	multi-exon	FALSE	canonical	3	2797	junction_1	495.826806679734	2229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATGTCCATTCTTAGGG	3977	False	NA	33	True	AATAAA	-22	NA	10181377	10185188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_10181629_10183787_10183898_10184527_10184665_10185080
transcript_28834.known	chr19	+	1026	3	FSM	ENSMUSG00000036372.15	ENSMUST00000127878.2	1026	3	0	0	0	0	multi-exon	FALSE	canonical	3	2797	junction_1	181	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGCCTCATGTCCATTC	4181	False	NA	27	True	AATAAA	-16	NA	10181581	10185182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_10181629_10183787_10184665_10185080
transcript_28835.known	chr19	-	2373	3	FSM	ENSMUSG00000024742.16	ENSMUST00000156291.2	2373	3	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_2	414.5	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTCTGAATGTTTGAAAA	1929	False	NA	NA	False	AATAAA	-20	NA	10181533	10176495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10178462_10181051_10181384_10181458
transcript_28838.known	chr19	-	2152	2	FSM	ENSMUSG00000024742.16	ENSMUST00000142241.2	2152	2	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACCAGAATGTGTCTGAA	2204	False	NA	NA	False	AATAAA	-10	NA	10181258	10176505	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10178462_10181062
transcript_28839.known	chr19	-	2100	2	FSM	ENSMUSG00000024742.16	ENSMUST00000116542.9	2100	2	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	0	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	2155	False	NA	NA	False	AATAAA	-14	NA	10181307	10176501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10178462_10181167
transcript_28840.known	chr19	-	2341	2	FSM	ENSMUSG00000024742.16	ENSMUST00000025651.6	2341	2	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_1	0	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAATGTGTCTGAATGTT	2030	False	NA	NA	False	AATAAA	-14	NA	10181432	10176501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10178462_10181051
transcript_28841.nnic	chr19	+	630	3	Antisense	novelGene_ENSMUSG00000035735.11_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	1	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACACTGACTGCGTCGGGC	NA	False	NA	NA	False	NA	NA	NA	10229364	10231576	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr19_+_10229452_10230717_10230922_10231237
transcript_28844.known	chr19	+	3315	11	FSM	ENSMUSG00000034820.5	ENSMUST00000236206.2	3315	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	86.2092802429066	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAATGTAAAGTGAC	NA	False	NA	NA	False	TTTAAA	-5	NA	10502629	10524766	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_10502692_10503315_10503425_10509144_10509364_10509494_10509561_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
transcript_28849.nic	chr19	+	3576	10	NIC	ENSMUSG00000034820.5	novel	3500	10	NA	NA	-23	80	combination_of_known_junctions	FALSE	canonical	3	71	junction_5	59.2792096047006	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCTGCATTGAATAGATT	NA	False	NA	16	True	AATAAA	-21	NA	10502606	10525097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_10502692_10503315_10503425_10509144_10509364_10510183_10510288_10510656_10510803_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
transcript_28850.known	chr19	+	3500	10	FSM	ENSMUSG00000034820.5	ENSMUST00000038379.5	3500	10	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_5	38.5749230894635	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTTATACTGCATTGT	NA	False	NA	16	True	AATAAA	-16	NA	10502629	10525017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_10502692_10503315_10503425_10509144_10509364_10510183_10510288_10510656_10510830_10512467_10512883_10514162_10514282_10516983_10517153_10518044_10518213_10523055
transcript_28852.nic	chr19	-	939	6	NIC	ENSMUSG00000024667.13	novel	876	6	NA	NA	-49	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	28.4717403753266	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACAGGGCTGGTTGATT	NA	False	NA	-10	True	AATAAA	-10	NA	10533169	10527831	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_10528184_10528321_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533062
transcript_28853.known	chr19	-	876	6	FSM	ENSMUSG00000024667.13	ENSMUST00000236561.2	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	26.7686383665662	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATACAGGGCTGGTTGATT	NA	False	NA	-10	True	AATAAA	-10	NA	10533120	10527831	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10528184_10528321_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533076
transcript_28855.known	chr19	-	2025	5	FSM	ENSMUSG00000024668.9	ENSMUST00000235853.2	2025	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	101.25802437338	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTATTGTTTGATCTAC	NA	False	NA	NA	False	AATAAA	-17	NA	10502520	10479004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10498312_10498423_10502422
transcript_2886.known	chr1	-	3948	9	FSM	ENSMUSG00000026577.14	ENSMUST00000027866.11	3948	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_8	81.786975582913	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGACTTAGTTCTTTCTC	NA	False	NA	NA	False	AATAAA	-13	NA	164135053	164117368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164131472_164131494_164134007_164134086_164134715_164134924_164135010
transcript_28862.known	chr19	-	999	5	FSM	ENSMUSG00000024667.13	ENSMUST00000059582.9	999	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	20.6079474960511	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTTTTAATAAAAGTAT	NA	False	NA	-34	True	NA	NA	NA	10533115	10527855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533062
transcript_28863.known	chr19	-	927	5	FSM	ENSMUSG00000024667.13	ENSMUST00000154383.2	927	5	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_4	15.1224171348366	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAACCCATTTAGTAGTTT	NA	False	NA	-92	True	NA	NA	NA	10533115	10527913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10528405_10529136_10529339_10531892_10531986_10532426_10532529_10533076
transcript_28864.known	chr19	-	2981	4	FSM	ENSMUSG00000024668.9	ENSMUST00000025570.8	2981	4	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	14.7196014438797	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGCTCCCCAGGACCCAC	NA	False	NA	NA	False	AATAAA	-16	NA	10502479	10477897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10480494_10494343_10494454_10494532_10494751_10502422
transcript_28865.known	chr19	-	997	4	FSM	ENSMUSG00000024668.9	ENSMUST00000235243.2	997	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	80.2426874480715	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCATTGAGGCAAACTTTC	NA	False	NA	0	True	NA	NA	NA	10502456	10479707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10480494_10494343_10494454_10494683_10494751_10502422
transcript_28872.known	chr19	-	1228	3	FSM	ENSMUSG00000024668.9	ENSMUST00000235446.2	1228	3	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGGCATTGAGGCAAAC	NA	False	NA	-4	True	NA	NA	NA	10502461	10479711	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10480494_10494343_10494751_10502422
transcript_28875.known	chr19	+	4459	27	FSM	ENSMUSG00000024740.11	ENSMUST00000025649.10	4459	27	0	0	0	0	multi-exon	FALSE	canonical	3	2606	junction_4	266.254060724097	324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTCTTATTGGTCTCTGC	370	False	NA	56	True	AATAAA	-16	NA	10582690	10607183	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_10583131_10584208_10584358_10585156_10585274_10585614_10585837_10588065_10588181_10589007_10589106_10590236_10590396_10591471_10591556_10592215_10592333_10592851_10592955_10596412_10596489_10596583_10596693_10598904_10599084_10599184_10599349_10599425_10599534_10599653_10599862_10600702_10600799_10600890_10601003_10602087_10602212_10602530_10602696_10603259_10603355_10603955_10604127_10604489_10604600_10604852_10605023_10605125_10605229_10605788_10605913_10606442
transcript_28879.known	chr19	-	2437	18	FSM	ENSMUSG00000034371.10	ENSMUST00000236950.2	2437	18	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_17	12.9229818620786	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTTTGTCCCTGTTTACA	9789	False	NA	-23	True	AATAAA	-17	NA	10582748	10569560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582582
transcript_2888.known	chr1	-	1602	8	FSM	ENSMUSG00000026577.14	ENSMUST00000086032.4	1602	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_7	61.8978750747997	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACATACCCATGAAGCTA	NA	False	NA	-24	True	AATAAA	-19	NA	164135058	164119698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_164119981_164123278_164123499_164125807_164125937_164127113_164127314_164129852_164130290_164134007_164134086_164134715_164134924_164135010
transcript_28880.known	chr19	-	2516	18	FSM	ENSMUSG00000034371.10	ENSMUST00000236607.2	2516	18	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_17	13.858404068355	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGACTTTGTCCCTGTTTAC	9519	False	NA	-24	True	AATAAA	-16	NA	10583018	10569561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10570154_10570510_10570601_10570689_10570724_10570827_10570932_10571033_10571141_10571794_10571933_10572066_10572187_10572657_10572775_10573375_10573466_10573561_10573647_10573721_10573757_10574295_10574386_10574673_10574753_10576395_10576578_10576671_10576783_10577934_10578125_10581531_10581638_10582772
transcript_28883.known	chr19	+	2634	9	FSM	ENSMUSG00000034445.9	ENSMUST00000237581.2	2634	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	28.8693176226942	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATCAGAGGTCTCTTTT	NA	False	NA	7	True	ATTAAA	-10	NA	10554854	10567186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_10554928_10555097_10555448_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
transcript_28886.nic	chr19	+	2337	8	NIC	ENSMUSG00000034445.9	novel	3130	8	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	27.7319531315376	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTCTCTTTTGTTCAGA	NA	False	NA	14	True	ATTAAA	-17	NA	10554808	10567193	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_10554928_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
transcript_28887.known	chr19	+	3130	8	FSM	ENSMUSG00000034445.9	ENSMUST00000237814.2	3130	8	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	19.4768308196049	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTCTCTTTTGTTCAGA	NA	False	NA	14	True	ATTAAA	-17	NA	10554535	10567193	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_10555448_10556345_10556439_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
transcript_28890.known	chr19	+	1474	7	FSM	ENSMUSG00000034445.9	ENSMUST00000168445.2	1474	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	29.6516816086748	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCGGGCAGGGGCTCCTGGG	NA	False	NA	NA	False	NA	NA	NA	10554817	10565912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_10555448_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
transcript_28891.nic	chr19	+	2244	7	NIC	ENSMUSG00000034445.9	novel	3130	8	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	29.2845237853262	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTCTCTTTTGTTCAGA	NA	False	NA	14	True	ATTAAA	-17	NA	10554808	10567193	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_10554928_10557826_10557927_10559661_10559861_10562545_10562755_10564054_10564210_10565185_10565343_10565888
transcript_28893.known	chr19	-	1260	5	FSM	ENSMUSG00000024666.7	ENSMUST00000235990.2	1260	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	58.8175143983491	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTGGTGTCTTCATG	1765	False	NA	-6	True	AATAAA	-13	NA	10554471	10547843	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10548633_10548892_10548969_10552200_10552300_10552603_10552876_10554447
transcript_28894.nic	chr19	-	1438	5	NIC	ENSMUSG00000024666.7	novel	1529	5	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_4	52.1464284491278	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTGGTGTCTTCATG	1775	False	NA	-6	True	AATAAA	-13	NA	10554461	10547843	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554332
transcript_28895.known	chr19	-	1590	5	FSM	ENSMUSG00000024666.7	ENSMUST00000025568.3	1590	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_4	27.5896266738062	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTTGGTGTCTTCATGGT	1510	False	NA	-4	True	AATAAA	-15	NA	10554726	10547841	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10548633_10548892_10548969_10552200_10552373_10552603_10552876_10554447
transcript_28896.known	chr19	-	1593	4	FSM	ENSMUSG00000024666.7	ENSMUST00000236185.2	1593	4	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	28.0158685192676	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTGGTGTCTTCATG	1765	False	NA	-6	True	AATAAA	-13	NA	10554471	10547843	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10548969_10552200_10552373_10552603_10552876_10554447
transcript_28897.known	chr19	-	1417	9	FSM	ENSMUSG00000024738.7	ENSMUST00000025647.7	1417	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	4.3283224232952	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATACTAACGTCTGCTCT	NA	False	NA	NA	False	AATAAA	-20	NA	10655435	10646319	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10646626_10646718_10646818_10646891_10647037_10649151_10649269_10651001_10651202_10652190_10652310_10652407_10652526_10653988_10654149_10655282
transcript_28899.known	chr19	+	2690	5	FSM	ENSMUSG00000048832.10	ENSMUST00000235927.2	2690	5	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_1	43.0145324280062	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGGTGTCCATGATGAG	NA	False	NA	16	True	AATAAA	-19	NA	10666114	10691990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_10666348_10683573_10683673_10687633_10687806_10688634_10688718_10689887
transcript_28900.nic	chr19	+	2601	5	NIC	ENSMUSG00000048832.10	novel	2690	5	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	46.3923485070545	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGGTGTCCATGATGAG	NA	False	NA	16	True	AATAAA	-19	NA	10666116	10691990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_10666261_10683573_10683673_10687633_10687806_10688634_10688718_10689887
transcript_28901.nic	chr19	+	2539	4	NIC	ENSMUSG00000048832.10	novel	2686	5	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_2	51.9893151415643	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGGTGTCCATGATGAG	NA	False	NA	16	True	AATAAA	-19	NA	10666089	10691990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_10666344_10683573_10683673_10688634_10688718_10689887
transcript_28902.known	chr19	-	2173	9	FSM	ENSMUSG00000024670.18	ENSMUST00000025572.8	2173	9	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_4	1.11102430216445	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTAGGCGTGTCTTGA	8156	False	NA	NA	False	ATTAAA	-13	NA	10776108	10766709	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10767608_10767932_10768035_10768279_10768535_10768745_10768818_10770191_10770309_10771505_10771602_10771927_10772069_10773689_10773753_10775679
transcript_28903.known	chr19	-	3657	11	FSM	ENSMUSG00000024736.16	ENSMUST00000025645.14	3657	11	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_8	9.57131129992124	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGTGACACTCTCTGTC	NA	False	NA	1	True	AATAAA	-27	NA	10847304	10835185	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10836516_10836927_10837120_10837487_10837762_10838893_10839097_10840586_10840731_10840828_10841025_10841318_10841469_10842619_10842952_10843832_10844052_10844293_10844509_10846902
transcript_28904.known	chr19	-	3895	10	FSM	ENSMUSG00000024736.16	ENSMUST00000120524.2	3895	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_7	10.088497300281	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATAGCTGGTACTGCTGTG	NA	False	NA	-11	True	AATAAA	-15	NA	10847142	10835197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10837120_10837487_10837762_10838893_10839097_10840586_10840731_10840828_10841025_10841318_10841469_10842619_10842952_10843832_10844052_10844293_10844509_10846902
transcript_28905.known	chr19	-	2188	4	FSM	ENSMUSG00000034659.15	ENSMUST00000038128.15	2188	4	0	0	0	0	multi-exon	TRUE	canonical	3	149	junction_2	8.28653526310404	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGCTGACAAACTCTC	NA	False	NA	-3	True	AATAAA	-17	NA	10859365	10848023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10849514_10849950_10850054_10851605_10851851_10859015
transcript_28906.known	chr19	+	6035	16	FSM	ENSMUSG00000024735.14	ENSMUST00000179297.3	6035	16	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	36.1106940146852	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATGTGTGGTATGTGCCC	NA	False	NA	NA	False	AATAAA	-22	NA	10872777	10886923	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876289_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
transcript_28908.known	chr19	+	2134	16	FSM	ENSMUSG00000024735.14	ENSMUST00000025642.14	2134	16	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	13.7346277707115	458	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTCAGCTTCTTGTGTCTG	NA	False	NA	15	True	ATTAAA	-21	NA	10872594	10882896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_10872833_10874866_10875017_10875180_10875258_10876346_10876489_10876568_10876643_10876733_10876797_10877538_10877581_10877687_10877763_10878053_10878130_10878290_10878401_10879707_10879864_10880065_10880136_10880331_10880418_10880654_10880826_10881001_10881108_10882398
transcript_2891.known	chr1	-	2580	6	FSM	ENSMUSG00000026576.13	ENSMUST00000027863.13	2580	6	0	0	0	0	multi-exon	FALSE	canonical	3	1015	junction_5	105.155123508082	270	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACGTGTGTGACTCGATT	NA	False	NA	-16	True	AATAAA	-16	NA	164285924	164264677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_164266109_164266867_164266952_164269025_164269211_164270763_164270920_164281057_164281187_164285329
transcript_28912.nnic	chr19	-	1613	5	NNC	ENSMUSG00000024732.8	novel	3003	4	NA	NA	-49	-1319	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	114.6799895361	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCTTCAGCTGTGAATT	NA	False	NA	-95	True	AAAACA	-7	NA	10926679	10920163	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641_10926169_10926288
transcript_28915.known	chr19	-	3003	4	FSM	ENSMUSG00000024732.8	ENSMUST00000025639.7	3003	4	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_1	21.483844059096	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTCACCTTGCTCCGGGAG	NA	False	NA	NA	False	ATTAAA	-22	NA	10926630	10918844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10920654_10920841_10920917_10922646_10922777_10925641
transcript_28916.known	chr19	-	407	4	FSM	ENSMUSG00000024731.16	ENSMUST00000190246.2	407	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAAAGAAACCGGGGTGT	6037	False	NA	NA	False	AATAAA	-13	NA	10943220	10939663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_10939767_10941399_10941494_10942025_10942137_10943121
transcript_28918.known	chr19	+	1162	4	FSM	ENSMUSG00000024683.7	ENSMUST00000167199.3	1162	4	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_3	22.4499443206436	448	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCTTATCTCCGGACCT	161	False	NA	NA	False	NA	NA	NA	11747754	11752324	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_11747889_11748165_11748232_11750238_11750388_11751511
transcript_28923.known	chr19	-	2810	11	FSM	ENSMUSG00000041488.17	ENSMUST00000069285.6	2810	11	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_5	58.7316779940774	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGGGGCCATCTCTCTG	7137	False	NA	-8	True	AATAAA	-25	NA	11796306	11754848	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_11756538_11758930_11759045_11760389_11760501_11762753_11762889_11763048_11763123_11763888_11763998_11765532_11765601_11766920_11766996_11769109_11769210_11780857_11780942_11796055
transcript_28926.known	chr19	+	4216	19	FSM	ENSMUSG00000046139.9	ENSMUST00000061618.9	4216	19	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_1	27.8366043764299	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGATAGATGTCCATCTCT	NA	False	NA	21	True	AATAAA	-11	NA	11889762	11922455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_11889942_11891711_11891824_11897541_11897760_11898168_11898250_11898732_11898928_11899830_11899933_11900750_11900841_11901164_11901383_11902500_11902591_11907238_11907420_11908896_11909021_11909501_11909600_11911043_11911104_11913042_11913192_11914583_11914744_11917047_11917204_11919992_11920085_11920188_11920339_11920694
transcript_28927.known	chr19	+	3267	4	FSM	ENSMUSG00000024691.14	ENSMUST00000025595.5	3267	4	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	5.90668171555645	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTTTTCTTTAGTTATT	NA	False	NA	4	True	AATAAA	-13	NA	12550886	12567126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_12550945_12554453_12554535_12561286_12561487_12564198
transcript_2893.known	chr1	-	5535	8	FSM	ENSMUSG00000040848.12	ENSMUST00000043338.10	5535	8	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	7.62380803664362	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTGTTGTCTCTTACTC	NA	False	NA	NA	False	AATAAA	-26	NA	165022007	165001905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_165006865_165009620_165009651_165011395_165011452_165011538_165011575_165012576_165012659_165015537_165015624_165015816_165015904_165021808
transcript_28937.known	chr19	-	2617	9	FSM	ENSMUSG00000024640.10	ENSMUST00000025542.10	2617	9	0	0	0	0	multi-exon	TRUE	canonical	3	2829	junction_2	225.154079188008	2229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAAAGGTGGAGTGGGTG	NA	False	NA	NA	False	TTTAAA	-44	NA	15902423	15882041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15902227
transcript_2894.known	chr1	-	3798	7	FSM	ENSMUSG00000040848.12	ENSMUST00000192185.6	3798	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	27.3780122645081	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCATGGCTGTGGATTTCC	NA	False	NA	NA	False	AATGAA	-18	NA	165021890	165003439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_165006865_165009620_165009651_165011395_165011452_165011538_165011575_165012576_165012659_165015816_165015904_165021808
transcript_28954.known	chr19	-	2291	9	FSM	ENSMUSG00000024640.10	ENSMUST00000162053.8	2291	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	1098.17038181696	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCATTGCCTGTGAATTAT	NA	False	NA	-14	True	ATTAAA	-20	NA	15901986	15882490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_15883516_15884293_15884432_15886664_15886794_15892227_15892398_15894440_15894614_15895569_15895776_15896818_15896889_15898299_15898361_15901667
transcript_28955.known	chr19	-	1572	3	FSM	ENSMUSG00000024640.10	ENSMUST00000161707.2	1572	3	0	0	0	0	multi-exon	FALSE	canonical	3	2829	junction_2	366	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATTCATTGCCTGTGAAT	NA	False	NA	-17	True	ATTAAA	-17	NA	15887076	15882493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_15883516_15884293_15884432_15886664
transcript_28956.known	chr19	-	2548	15	FSM	ENSMUSG00000041491.9	ENSMUST00000047704.8	2548	15	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_1	15.9123876785558	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATATTGAGTGATAAAAT	175	False	NA	NA	False	AATAAA	-16	NA	15962353	15933137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_15933768_15936895_15937065_15938306_15938474_15939735_15939814_15946435_15946565_15947896_15947943_15948259_15948396_15951719_15951832_15952251_15952317_15953612_15953727_15956144_15956320_15958455_15958560_15958828_15958902_15958991_15959165_15961976
transcript_2896.known	chr1	-	4380	7	FSM	ENSMUSG00000040843.11	ENSMUST00000043235.8	4380	7	0	0	0	0	multi-exon	FALSE	canonical	3	508	junction_2	54.8414381041684	419	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTTCGTCATGTTTACT	NA	False	NA	NA	False	NA	NA	NA	165064512	165039854	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_165043450_165045351_165045415_165047667_165047764_165050097_165050230_165055073_165055174_165055836_165056017_165064298
transcript_28960.nic	chr19	-	550	5	ISM	ENSMUSG00000046230.12	ENSMUST00000225764.2	2591	6	-37	7303	-37	-7303	5prime_fragment	FALSE	canonical	3	36	junction_2	3.49106001094224	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAATAGAAAAAGCAAAACAG	NA	False	NA	NA	False	ACTAAA	-3	NA	16758334	16736986	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_-_16737053_16737304_16737401_16739512_16739556_16743860_16743905_16758033
transcript_28962.nic	chr19	+	1172	8	ISM	ENSMUSG00000039126.11	ENSMUST00000223920.2	1803	9	-7	13092	-7	-1639	5prime_fragment	FALSE	canonical	3	57	junction_3	14.2427926635594	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTATTCTTTCAGATCCT	NA	False	NA	14	True	AATAAA	-26	NA	17114122	17185856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_17114256_17145626_17145707_17156153_17156355_17170619_17170794_17176476_17176580_17177144_17177277_17179005_17179093_17185594
transcript_28964.nnic	chr19	-	2214	4	NNC	ENSMUSG00000038843.19	novel	4606	3	NA	NA	13	55	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	19.3964487013015	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATCCTTGTAAATAATTT	8047	False	NA	NA	False	AATAGA	-19	NA	17334018	17305977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_17307853_17310473_17310621_17313610_17313705_17333920
transcript_28965.known	chr19	-	4606	3	FSM	ENSMUSG00000038843.19	ENSMUST00000174236.8	4606	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	7	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTATGTCTGCACACATTA	8034	False	NA	2	True	AATAAA	-21	NA	17334031	17303504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_17307853_17310473_17310621_17333920
transcript_28967.known	chr19	+	2482	4	FSM	ENSMUSG00000024712.10	ENSMUST00000025617.4	2482	4	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_3	47.0744091837593	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGAATCCTGTATCTGTTT	1324	False	NA	19	True	AATAAA	-34	NA	17371406	17378713	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_17371757_17372561_17372714_17375941_17376045_17376836
transcript_28970.known	chr19	-	2726	10	FSM	ENSMUSG00000024725.14	ENSMUST00000025631.7	2726	10	0	0	0	0	multi-exon	FALSE	canonical	3	989	junction_2	42.8315679128904	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTAATTTTGTGTCACTG	NA	False	NA	NA	False	TTTAAA	-4	NA	18609153	18556691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_18558693_18562005_18562108_18563910_18563990_18567068_18567119_18567764_18567873_18569946_18570001_18571219_18571284_18573714_18573766_18581529_18581577_18608983
transcript_28977.known	chr19	-	2816	9	FSM	ENSMUSG00000024725.14	ENSMUST00000156908.8	2816	9	0	0	0	0	multi-exon	FALSE	canonical	3	1071	junction_2	24.446050294475	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATTGTAATAGTTTTTTT	NA	False	NA	-2	True	AATAAA	-34	NA	18609104	18558355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_18558693_18562005_18563990_18567068_18567119_18567764_18567873_18569946_18570001_18571219_18571284_18573714_18573766_18581529_18581577_18608983
transcript_28983.nnic	chr19	+	1925	10	NNC	ENSMUSG00000037847.15	novel	1768	10	NA	NA	-38	-3	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_8	32.8389260136259	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGTGTTTGGTAGGTTTTA	NA	False	NA	NA	False	NA	NA	NA	18609275	18629555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_18609446_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418_18622503_18625715_18625900_18628599
transcript_28984.known	chr19	+	1940	9	FSM	ENSMUSG00000037847.15	ENSMUST00000237347.2	1940	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_8	10.6880482315528	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTCTCAATTCATACAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	18609313	18629792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_18609446_18613442_18613507_18616881_18616973_18617249_18617299_18618487_18618636_18618766_18618839_18619537_18619645_18622418_18622503_18628599
transcript_2899.known	chr1	+	1025	5	FSM	ENSMUSG00000026568.7	ENSMUST00000027853.6	1025	5	0	0	0	0	multi-exon	FALSE	canonical	3	408	junction_4	28.8704000665041	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACCCCCCACTTCATCTT	NA	False	NA	107	True	AATAAA	-16	NA	165288605	165308783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_165289081_165302522_165302564_165305789_165305875_165307035_165307148_165308471
transcript_28991.known	chr19	+	1341	2	FSM	ENSMUSG00000037847.15	ENSMUST00000162446.2	1341	2	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	18609325	18614663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_18609446_18613442
transcript_28993.nic	chr19	+	1435	8	NIC	ENSMUSG00000024726.11	novel	1714	8	NA	NA	-98	129	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	433.244145714536	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAGACATTATCTCCCA	NA	False	NA	NA	False	NA	NA	NA	18648594	18681715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_18648800_18655051_18655248_18656467_18656632_18667593_18667735_18668780_18668960_18671012_18671127_18680724_18680829_18681383
transcript_28994.known	chr19	+	1714	8	FSM	ENSMUSG00000024726.11	ENSMUST00000235736.2	1714	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	444.181981459245	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGGTGCCTTCTTATTC	NA	False	NA	NA	False	AATAAA	-45	NA	18648242	18681586	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_18648856_18655051_18655248_18656467_18656632_18667593_18667735_18668780_18668960_18671012_18671127_18680724_18680829_18681383
transcript_28997.known	chr19	+	1677	2	FSM	ENSMUSG00000047044.8	ENSMUST00000062753.3	1677	2	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTATGTATCAGTGACTAA	9314	False	NA	26	True	AATAAA	-19	NA	18690556	18695792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_18691024_18694582
transcript_28998.known	chr19	-	1674	13	FSM	ENSMUSG00000024659.16	ENSMUST00000025561.8	1674	13	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	3.1446603773522	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTGTCATTGTCTCTC	7005	False	NA	2	True	AATAAA	-23	NA	20368308	20350791	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_20351135_20352588_20352712_20354015_20354075_20354970_20355067_20355759_20355854_20357012_20357070_20357703_20357784_20359413_20359505_20360225_20360340_20361120_20361216_20361838_20361948_20362056_20362137_20367975
transcript_29.known	ERCC-00079	+	628	1	FSM	ERCC-00079A	DQ883652	628	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	43	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	628	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00079_+_0_600
transcript_290.nic	chr1	+	1493	15	ISM	ENSMUSG00000025915.15	ENSMUST00000171265.8	3680	17	36	11755	-13	11	5prime_fragment	FALSE	canonical	3	97	junction_4	18.9797152728047	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGTATTTAGTGAAACAT	9850	False	NA	NA	False	ATTAAA	-20	NA	9918532	9959313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_9918611_9935355_9935574_9938607_9938692_9941854_9941928_9942482_9942559_9947390_9947479_9949250_9949301_9950556_9950615_9951802_9951887_9951984_9952117_9954631_9954745_9954849_9954887_9955891_9955979_9956271_9956368_9959094
transcript_2900.nnic	chr1	+	1252	4	NIC	ENSMUSG00000026568.7	novel	1025	5	NA	NA	37	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	205.825708360793	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGTCTTTACATTTGCC	NA	False	NA	12	True	AATAAA	-17	NA	165288242	165308688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_165289081_165305789_165305875_165307035_165307148_165308471
transcript_29002.nnic	chr19	-	1362	4	NNC	ENSMUSG00000035171.10	novel	1614	4	NA	NA	-138279	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	88.3377357393518	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	NA	False	NA	NA	False	AATAAA	-21	NA	21768619	21574675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_21575699_21576118_21576233_21581652_21581683_21768424
transcript_29003.known	chr19	-	1614	4	FSM	ENSMUSG00000035171.10	ENSMUST00000038830.10	1614	4	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	6.94422221866655	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	453	False	NA	NA	False	AATAAA	-21	NA	21630340	21574675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_21575699_21576118_21576233_21596472_21596580_21629970
transcript_29004.known	chr19	-	942	3	FSM	ENSMUSG00000035171.10	ENSMUST00000179553.2	942	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	89.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAACCCAACCTTCATAC	629	False	NA	NA	False	AATATA	-43	NA	21630164	21575064	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_21575699_21576118_21576233_21629970
transcript_29005.nnic	chr19	-	1300	3	NNC	ENSMUSG00000035171.10	novel	1614	4	NA	NA	-138243	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	97	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	NA	False	NA	NA	False	AATAAA	-21	NA	21768583	21574675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_21575699_21576118_21576233_21768420
transcript_29006.nnic	chr19	-	1782	3	NNC	ENSMUSG00000035171.10	novel	1614	4	NA	NA	-138279	0	intron_retention	FALSE	non_canonical	0	0	junction_2	7	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTGTCTTGTTGTTGT	NA	False	NA	NA	False	AATAAA	-21	NA	21768619	21574675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_21576233_21581652_21581683_21768424
transcript_29007.known	chr19	-	962	3	FSM	ENSMUSG00000035171.10	ENSMUST00000179768.8	962	3	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_2	1.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACCAGACGCTCCAGAAAA	512	False	NA	NA	False	AATAAA	-1	NA	21630281	21575688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_21576233_21596472_21596580_21629970
transcript_29008.known	chr19	+	2259	4	FSM	ENSMUSG00000047368.5	ENSMUST00000052556.5	2259	4	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_3	15.3260852434302	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCGGCTGTGCTTGTGTGC	NA	False	NA	12	True	AGTAAA	-15	NA	21630888	21663001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_21630958_21655716_21656187_21658231_21658412_21661461
transcript_29009.known	chr19	+	1954	2	FSM	ENSMUSG00000047368.5	ENSMUST00000236549.2	1954	2	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTCGGCTGTGCTTGTGTGC	4437	False	NA	12	True	AGTAAA	-15	NA	21657997	21663001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_21658412_21661461
transcript_2902.known	chr1	-	2285	6	FSM	ENSMUSG00000026566.16	ENSMUST00000111435.9	2285	6	0	0	0	0	multi-exon	TRUE	canonical	3	372	junction_2	205.630737002035	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTGTCTGCTTGTTTT	NA	False	NA	-1	True	AATACA	-19	NA	165462098	165419808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_165421247_165429318_165429425_165432178_165432312_165433177_165433392_165436006_165436174_165461871
transcript_29027.known	chr19	+	414	2	FSM	ENSMUSG00000044387.6	ENSMUST00000142712.2	414	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAGAAAGAAACATCGCTAG	NA	False	NA	NA	False	NA	NA	NA	23112263	23113081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_23112319_23112722
transcript_29029.nnic	chr19	+	1644	2	Fusion	ENSMUSG00000044387.6_ENSMUSG00000033863.3	novel	414	2	NA	NA	-80	720	multi-exon	FALSE	canonical	3	42	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCCCCTGTAAGTAGTA	NA	False	NA	31	True	NA	NA	NA	23112183	23143555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr19_+_23112319_23142046
transcript_29030.known	chr19	+	4486	2	FSM	ENSMUSG00000033863.3	ENSMUST00000036884.3	4486	2	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCCATTACGTTCTTCCA	NA	False	NA	NA	False	AATAAA	-29	NA	23118589	23145498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_23119624_23142046
transcript_29036.known	chr19	-	3448	24	FSM	ENSMUSG00000024943.10	ENSMUST00000223934.2	3448	24	0	0	0	0	multi-exon	FALSE	canonical	2	185	junction_5	71.1727842464471	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTTATTTTTGGAAACCT	NA	False	NA	4	True	AATAAA	-29	NA	23251261	23186086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_23186333_23187614_23187711_23187787_23187968_23191114_23191235_23191429_23191535_23192005_23192105_23195768_23195895_23205537_23205661_23206278_23206403_23208921_23209092_23209182_23209357_23211326_23211460_23213237_23213333_23216248_23216363_23219999_23220155_23221218_23221475_23232040_23232113_23234851_23235014_23237010_23237152_23238696_23238832_23240967_23241131_23243029_23243083_23246090_23246233_23250997
transcript_29037.nnic	chr19	+	851	2	Genic_Genomic	ENSMUSG00000051255.7	novel	633	1	NA	NA	-27	260	multi-exon	FALSE	canonical	3	409	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGAAACAGCGGAT	NA	False	NA	NA	False	NA	NA	NA	23653184	23654104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr19_+_23653644_23653712
transcript_29038.known	chr19	+	633	1	FSM	ENSMUSG00000051255.7	ENSMUST00000056396.7	633	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAAGTTCGTGCTTTCTG	NA	False	NA	NA	False	AAAAAG	-26	NA	23653211	23653844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_23653200_23653800
transcript_29041.known	chr19	+	12574	7	FSM	ENSMUSG00000074925.5	ENSMUST00000237333.2	12574	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	3.54338193757822	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTTAAGATTTATTCATTT	NA	False	NA	19	True	AATAAA	-26	NA	23664792	23709032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_23664910_23671684_23671855_23680441_23680509_23683070_23683176_23686117_23686332_23695176_23695467_23697421
transcript_29046.known	chr19	-	4668	23	FSM	ENSMUSG00000024812.12	ENSMUST00000233027.2	4668	23	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_22	83.9099280958925	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATAAAAATGTGTGTATGA	NA	False	NA	NA	False	ATTAAA	-16	NA	24151553	24071868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_24072955_24073947_24074034_24075364_24075680_24076816_24076928_24078065_24078279_24079260_24079362_24086008_24086220_24087094_24087175_24088384_24088481_24088789_24088984_24090109_24090321_24091439_24091549_24097308_24097460_24098200_24098268_24099388_24099523_24099626_24099736_24101931_24102086_24103068_24103173_24108218_24108838_24109969_24110073_24112213_24112339_24116142_24116197_24151318
transcript_29047.nic	chr19	-	595	5	ISM	ENSMUSG00000024812.12	ENSMUST00000232956.2	4728	24	66	38023	62	0	5prime_fragment	TRUE	canonical	0	0	junction_4	166.67408316832	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATTAAAAAACAAAATCTT	NA	False	NA	NA	False	NA	NA	NA	24202328	24109891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_-_24110073_24112213_24112339_24116142_24116197_24171072_24171194_24202214
transcript_29049.known	chr19	-	1114	5	FSM	ENSMUSG00000059363.11	ENSMUST00000081333.11	1114	5	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_4	29.2018835008977	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAAATGTCTTACACTGTG	NA	False	NA	NA	False	AAGAAA	-45	NA	24257969	24238816	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_24239418_24244665_24244764_24249710_24249832_24254544_24254640_24257770
transcript_2905.known	chr1	-	2171	5	FSM	ENSMUSG00000026566.16	ENSMUST00000068705.13	2171	5	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_1	201.827896981562	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTGTTGTCTGCTTGTTTT	NA	False	NA	-1	True	AATACA	-19	NA	165462090	165419808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_165421247_165432178_165432312_165433177_165433392_165436006_165436174_165461871
transcript_29050.known	chr19	-	1072	5	FSM	ENSMUSG00000059363.11	ENSMUST00000123684.2	1072	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	173.887894920837	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGAAAGTCTTACA	NA	False	NA	NA	False	NA	NA	NA	24257932	24238864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_24239418_24244665_24244764_24249667_24249832_24254544_24254640_24257770
transcript_29054.known	chr19	-	2573	15	FSM	ENSMUSG00000024867.15	ENSMUST00000025800.15	2573	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_9	5.473498303048	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGTCATACATTGATTC	NA	False	NA	0	True	AATAAA	-16	NA	24533236	24272157	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_24272919_24281395_24281511_24323600_24323746_24327497_24327654_24332481_24332567_24335393_24335443_24335574_24335659_24337303_24337516_24356165_24356466_24359051_24359205_24367707_24367826_24374379_24374511_24416416_24416486_24420965_24421053_24533128
transcript_29055.known	chr19	+	946	1	FSM	ENSMUSG00000058927.7	ENSMUST00000073080.7	946	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	373	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTATAGTTGATCTGCAAA	NA	False	NA	NA	False	AATAAA	-16	NA	24853049	24853995	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_24853000_24854000
transcript_29060.nic	chr19	-	1496	15	NIC	ENSMUSG00000024878.10	novel	1929	15	NA	NA	-2	-511	combination_of_known_junctions	FALSE	canonical	3	7	junction_14	49.7256247331498	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATCCTCTGGAGGTTTTT	NA	False	NA	-32	True	AGTAAA	-32	NA	24938976	24897790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_24898067_24898384_24898515_24899960_24900027_24900119_24900189_24905690_24905740_24909027_24909085_24915759_24915805_24918112_24918200_24920046_24920094_24925432_24925471_24926565_24926626_24930623_24930716_24932699_24932797_24935267_24935355_24938680
transcript_29061.known	chr19	-	1929	15	FSM	ENSMUSG00000024878.10	ENSMUST00000025815.10	1929	15	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_14	17.2858618647773	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATAGTGTGATGGTACTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	24938965	24897279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_24898067_24898384_24898515_24899960_24900027_24900119_24900189_24905690_24905740_24909027_24909085_24915759_24915805_24918112_24918200_24920046_24920094_24925432_24925471_24926565_24926626_24930623_24930716_24932699_24932797_24935267_24935355_24938747
transcript_29067.known	chr19	+	2340	5	FSM	ENSMUSG00000024837.16	ENSMUST00000025755.11	2340	5	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	4.08503365959205	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTGTGTGTATATTTG	NA	False	NA	12	True	AATAAA	-20	NA	25482981	25581693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_25483566_25487043_25487228_25523182_25523467_25537230_25537376_25580550
transcript_29068.known	chr19	+	1130	4	FSM	ENSMUSG00000024837.16	ENSMUST00000087525.5	1130	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	61.5304802516606	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTGTAGGATCCCAGACT	NA	False	NA	NA	False	AAAACA	-7	NA	25483069	25580855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_25483566_25487043_25487228_25537230_25537376_25580550
transcript_29069.known	chr19	-	503	3	FSM	ENSMUSG00000118001.2	ENSMUST00000237584.2	503	3	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	2.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTTCACGTGTATGCAGA	NA	False	NA	NA	False	NA	NA	NA	26461850	26460956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_26461343_26461656_26461733_26461809
transcript_29072.nnic	chr19	+	2042	9	NNC	ENSMUSG00000024921.18	novel	876	7	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	7.69740215917033	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGTGGTGTTGGTACTTT	NA	False	NA	17	True	AATAAA	-18	NA	26693290	26755675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_26693393_26693514_26693593_26698128_26698348_26729223_26729442_26748337_26748444_26748907_26749010_26751572_26751706_26753500_26753644_26754734
transcript_29077.known	chr19	-	2179	18	FSM	ENSMUSG00000041360.9	ENSMUST00000235859.2	2179	18	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	491.227662003022	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGCTCTGTGGTTGAATG	NA	False	NA	67	True	NA	NA	NA	27407220	27367376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_27367714_27371637_27371729_27373694_27373783_27376281_27376501_27377078_27377222_27389581_27389663_27393285_27393340_27394134_27394234_27396194_27396274_27397417_27397518_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436_27404529_27407191
transcript_2908.known	chr1	-	643	3	FSM	ENSMUSG00000026566.16	ENSMUST00000194437.6	643	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	400.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAACGTTGCATGGTGAAG	NA	False	NA	NA	False	NA	NA	NA	165462082	165420981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_165421247_165436006_165436174_165461871
transcript_2909.nic	chr1	-	2000	2	ISM	ENSMUSG00000040723.15	ENSMUST00000040357.11	2622	7	52008	0	52008	0	3prime_fragment	FALSE	canonical	3	37	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGGTTGGTTCTTATTCT	NA	False	NA	-2	True	AATAAA	-11	NA	165483609	165476515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_165477780_165482873
transcript_29091.known	chr19	-	1721	11	FSM	ENSMUSG00000041360.9	ENSMUST00000235297.2	1721	11	0	0	0	0	multi-exon	FALSE	canonical	3	1425	junction_3	83.6366546437625	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAATGTGGTTTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	27404509	27392740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_27393340_27394134_27394234_27396194_27396274_27397417_27397522_27398696_27398872_27399754_27399822_27400053_27400148_27400905_27400982_27401608_27401745_27403195_27403415_27404436
transcript_29092.known	chr19	+	3800	12	FSM	ENSMUSG00000024935.12	ENSMUST00000025875.5	3800	12	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_8	5.75246982529323	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGCCTCTCATCTGT	NA	False	NA	17	True	AATAAA	-27	NA	28812473	28891360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_28812733_28856412_28856554_28870234_28870328_28871853_28871969_28873483_28873527_28874906_28875003_28878841_28879027_28880085_28880194_28882011_28882135_28882732_28882928_28886830_28886966_28889053
transcript_29095.known	chr19	+	4079	7	FSM	ENSMUSG00000024780.8	ENSMUST00000225310.2	4079	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	62.7147421974203	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGTATCTGTAACATTTCT	3821	False	NA	NA	False	ATTAAA	-28	NA	28967751	28993171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28990187
transcript_29096.known	chr19	+	5179	7	FSM	ENSMUSG00000024780.8	ENSMUST00000050148.5	5179	7	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_6	22.9449825064702	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTAGTTATGATTTTGTC	3969	False	NA	11	True	AATAAA	-22	NA	28967899	28997637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288_28989454_28993405
transcript_29098.known	chr19	-	2809	5	FSM	ENSMUSG00000024782.8	ENSMUST00000025696.5	2809	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	7.58287544405155	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCGGGCTGTCTCCATGTT	NA	False	NA	-1	True	AATAAA	-16	NA	29025361	28998232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_29000347_29003611_29003731_29004570_29004744_29015271_29015392_29025078
transcript_29099.known	chr19	+	4163	6	FSM	ENSMUSG00000024780.8	ENSMUST00000225210.2	4163	6	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_5	18.3019124683734	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAAGTAG	3836	False	NA	NA	False	ATTAAA	-27	NA	28967766	28992536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_28968070_28972440_28972723_28976660_28976752_28984371_28984488_28984972_28985096_28989288
transcript_2910.nic	chr1	-	900	2	ISM	ENSMUSG00000040723.15	ENSMUST00000040357.11	2622	7	52146	962	52146	-962	3prime_fragment	FALSE	canonical	3	37	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTGTGGTGTCTGCTCC	NA	False	NA	NA	False	AATATA	-11	NA	165483471	165477477	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_165477780_165482873
transcript_29100.known	chr19	+	618	2	FSM	ENSMUSG00000118038.2	ENSMUST00000235636.2	618	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	29044746	29046903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_29044983_29046521
transcript_29101.known	chr19	+	1884	9	FSM	ENSMUSG00000024785.8	ENSMUST00000235900.2	1884	9	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_8	128.02514401476	471	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAATCTGGGATTTTATCT	NA	False	NA	113	True	NA	NA	NA	29078774	29121329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_29079041_29093122_29093195_29095624_29095801_29098669_29098745_29099165_29099291_29105398_29105525_29108049_29108207_29111799_29111904_29120546
transcript_29105.known	chr19	-	708	2	FSM	ENSMUSG00000050957.5	ENSMUST00000052380.5	708	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACTGCTTATATGTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	29302756	29298743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_29299140_29302444
transcript_29106.known	chr19	-	745	2	FSM	ENSMUSG00000039097.6	ENSMUST00000044143.6	745	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATATGGATTTGTCCTTT	NA	False	NA	NA	False	NA	NA	NA	29312070	29309106	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_29309567_29311785
transcript_29108.known	chr19	-	1020	6	FSM	ENSMUSG00000016495.13	ENSMUST00000143467.8	1020	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	10.1390334845093	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAATGTCCTGCTGCTTG	NA	False	NA	1	True	AATAAA	-21	NA	29339370	29325998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_29326406_29327759_29327870_29328443_29328575_29335716_29335804_29338216_29338328_29339196
transcript_29111.nnic	chr19	-	814	5	NIC	ENSMUSG00000016495.13	novel	1020	6	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	17.2825779327044	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAATGTCCTGCTGCTTG	NA	False	NA	1	True	AATAAA	-21	NA	29339295	29325998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_29326406_29327759_29327870_29335716_29335804_29338216_29338328_29339196
transcript_29113.nnic	chr19	-	708	5	NIC	ENSMUSG00000016495.13	novel	1012	7	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_2	17.2825779327044	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCAAATCATGGCAGTATTC	NA	False	NA	-105	True	AATAAA	-15	NA	29339295	29326104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_29326406_29327759_29327870_29335716_29335804_29338216_29338328_29339196
transcript_29114.known	chr19	-	604	4	FSM	ENSMUSG00000016495.13	ENSMUST00000152936.8	604	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	25.1042271783503	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAAATTTCTCGTGTGTA	NA	False	NA	-77	True	AATAAA	-43	NA	29339273	29326076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_29326406_29335716_29335804_29338216_29338328_29339196
transcript_29116.nnic	chr19	-	504	3	NIC	ENSMUSG00000016495.13	novel	604	4	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCAAATTTCTCGTGTGTA	NA	False	NA	-77	True	AATAAA	-43	NA	29339284	29326076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_29326406_29335716_29335804_29339196
transcript_29117.known	chr19	-	7058	15	FSM	ENSMUSG00000046324.13	ENSMUST00000159692.8	7058	15	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_6	30.8387014999672	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCTAAATGTTTAAGCT	NA	False	NA	NA	False	NA	NA	NA	29625815	29585613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_29590080_29590168_29590333_29593122_29593239_29593916_29594120_29595217_29595371_29600468_29600660_29601040_29601216_29604246_29604468_29606003_29606217_29608742_29608836_29609790_29609938_29614690_29614797_29617256_29617385_29623366_29623669_29625435
transcript_29119.nnic	chr19	+	700	4	NNC	ENSMUSG00000024806.5	novel	906	5	NA	NA	5831	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	19.7709101684492	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAACATCTCAATGTATA	NA	False	NA	4	True	NA	NA	NA	29681164	29685826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_29681401_29682019_29682117_29684207_29684322_29685573
transcript_2912.known	chr1	+	2163	4	FSM	ENSMUSG00000040713.13	ENSMUST00000111432.10	2163	4	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_1	24.0554914035583	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTGGACTGATTTCTG	NA	False	NA	NA	False	ATTAAA	-18	NA	165591314	165602877	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_165591708_165597381_165597502_165598200_165598386_165601412
transcript_29120.known	chr19	-	4575	1	FSM	ENSMUSG00000074909.6	ENSMUST00000099525.5	4575	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTCCTTCTACTGTGTT	NA	False	NA	-1	True	AATAAA	-21	NA	29790374	29785799	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_29785800_29790400
transcript_29121.known	chr19	+	2229	1	FSM	ENSMUSG00000024815.6	ENSMUST00000025727.6	2229	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTCTTTTGCATGTTTA	NA	False	NA	NA	False	ATTAAA	-10	NA	29981189	29983418	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_29981200_29983400
transcript_29122.nnic	chr19	+	743	3	NNC	ENSMUSG00000024863.7	novel	1089	6	NA	NA	4983	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0.5	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTTGTGCTCTGTGGGG	NA	False	NA	NA	False	AATAAA	-22	NA	30215324	30217087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_30215462_30215786_30215856_30216550
transcript_29123.nnic	chr19	+	723	3	NNC	ENSMUSG00000024863.7	novel	1089	6	NA	NA	5086	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	0.5	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTTGTGCTCTGTGGGG	NA	False	NA	NA	False	AATAAA	-22	NA	30215427	30217087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_30215545_30215786_30215856_30216550
transcript_29128.known	chr19	-	3262	6	FSM	ENSMUSG00000040451.19	ENSMUST00000151289.9	3262	6	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_5	43.4069118920017	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGCTATTATATTGTGT	8019	False	NA	-2	True	AATAAA	-17	NA	32188413	32100127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_32101925_32102625_32102793_32106940_32107095_32120145_32120264_32136923_32137764_32188227
transcript_29135.known	chr19	-	714	1	FSM	ENSMUSG00000062456.5	ENSMUST00000078034.5	714	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16829	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATGTTAGTAAAAATGTG	NA	False	NA	NA	False	AATAAA	-35	NA	32443978	32443264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_32443300_32444000
transcript_29136.known	chr19	+	2613	5	FSM	ENSMUSG00000024896.10	ENSMUST00000025827.10	2613	5	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_4	28.9687331445474	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCTGCACTCATTGAAAT	NA	False	NA	23	True	AATAAA	-30	NA	32463168	32492764	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_32463960_32468737_32468936_32471270_32471369_32475783_32475918_32491372
transcript_29137.known	chr19	+	2047	12	FSM	ENSMUSG00000024899.8	ENSMUST00000235594.2	2047	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.445361771415123	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATTTAAAACCAAGTTCA	NA	False	NA	NA	False	AGTAAA	-12	NA	32573189	32643110	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_32573276_32611285_32611401_32614433_32614670_32615653_32615793_32616318_32616438_32616617_32616732_32618699_32618812_32629295_32629502_32637978_32638115_32640454_32640724_32641820_32642051_32642825
transcript_2914.known	chr1	-	13022	17	FSM	ENSMUSG00000026565.19	ENSMUST00000160260.9	13022	17	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	5.36153837531729	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACATTGTCTGTGTCTCT	9645	False	NA	-9	True	ATTAAA	-17	NA	165830247	165692722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_165703618_165704545_165704635_165707698_165708045_165710615_165710688_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230_165759297_165830130
transcript_29141.known	chr19	-	3771	10	FSM	ENSMUSG00000013662.7	ENSMUST00000235412.2	3771	10	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_2	45.0335951413833	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAGCCTCTCTTAAAG	NA	False	NA	NA	False	AATAAA	-21	NA	32689731	32649037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_32651765_32654116_32654251_32661401_32661453_32664632_32664723_32673191_32673299_32675839_32676041_32678919_32679041_32679939_32680039_32684234_32684410_32689665
transcript_29149.known	chr19	-	1597	7	FSM	ENSMUSG00000071573.15	ENSMUST00000096114.13	1597	7	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_4	3.8151743807532	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTCGTTTTATAGCCTC	NA	False	NA	NA	False	AATAAA	-15	NA	33369665	33115146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_33115675_33145721_33145898_33179874_33180049_33359766_33359926_33367316_33367460_33368479_33368586_33369354
transcript_2915.known	chr1	-	2591	16	FSM	ENSMUSG00000026565.19	ENSMUST00000160908.8	2591	16	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_7	5.03940031705713	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAACAAAAACAGACAGAC	9701	False	NA	22	True	NA	NA	NA	165830191	165703025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_165703618_165704545_165704635_165707698_165708045_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230_165759297_165830130
transcript_29151.known	chr19	-	1378	5	FSM	ENSMUSG00000071573.15	ENSMUST00000163093.2	1378	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	8.20060973342836	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTCGTTTTATAGCCTC	NA	False	NA	NA	False	AATAAA	-15	NA	33369695	33115146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_33115675_33145721_33145898_33179874_33180049_33359766_33359926_33369354
transcript_29154.known	chr19	-	2839	11	FSM	ENSMUSG00000024766.16	ENSMUST00000112508.9	2839	11	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	12.3109707172099	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCTGTTTCTTAAAAGT	NA	False	NA	-1	True	NA	NA	NA	33567708	33532559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_33533880_33534506_33534579_33535664_33535737_33536911_33537056_33556761_33556899_33557864_33557975_33559452_33559652_33560446_33560565_33562269_33562376_33565600_33565744_33567290
transcript_2916.known	chr1	-	2201	17	FSM	ENSMUSG00000026565.19	ENSMUST00000184643.8	2201	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.71635131600484	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAACAAAAACAGACAGAC	9705	False	NA	22	True	NA	NA	NA	165830187	165703025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_165703086_165703471_165703618_165704545_165704635_165707698_165708045_165719378_165719485_165722473_165722654_165724005_165724152_165725193_165725336_165729708_165729883_165734253_165734349_165736448_165736576_165738856_165739046_165740795_165740919_165742678_165742733_165744490_165744592_165759230_165759297_165830130
transcript_29161.known	chr19	-	1550	4	FSM	ENSMUSG00000087303.4	ENSMUST00000238164.2	1550	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	8.25967446224258	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCTTCTGTTTCTTAAA	NA	False	NA	NA	False	NA	NA	NA	33708256	33697069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_33698425_33699077_33699150_33700229_33700302_33708205
transcript_29162.known	chr19	+	1481	9	FSM	ENSMUSG00000024778.14	ENSMUST00000025691.13	1481	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	3.55096817783545	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTCTGTTGTCTTGCTTG	NA	False	NA	NA	False	ATTAAA	-22	NA	34268065	34305172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_34268145_34284524_34284679_34292578_34292717_34293968_34294078_34295989_34296052_34296182_34296237_34296709_34296790_34297960_34297986_34304392
transcript_29163.known	chr19	-	2969	10	FSM	ENSMUSG00000024781.17	ENSMUST00000049572.15	2969	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_9	6.37704215656966	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATCGGTGTGGTGTTTGC	5915	False	NA	-2	True	AATAAA	-20	NA	34504874	34469717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_34471614_34472459_34472532_34477496_34477569_34478902_34479050_34484408_34484546_34486388_34486499_34488222_34488422_34500821_34500940_34502137_34502247_34504765
transcript_29165.known	chr19	-	2760	7	FSM	ENSMUSG00000033610.17	ENSMUST00000112460.3	2760	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_6	45.38232646698	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTTAGTGTACATGTTA	815	False	NA	-12	True	AATAAA	-18	NA	34855317	34788293	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_34789788_34791091_34791218_34798499_34798624_34799112_34799290_34804519_34804774_34818156_34818510_34855085
transcript_29168.nic	chr19	+	2544	19	ISM	ENSMUSG00000024795.12	ENSMUST00000223907.2	5423	32	-57	25842	-26	12961	5prime_fragment	FALSE	canonical	3	103	junction_1	63.1094727878118	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAGGAAAAAGCAGAATTAA	NA	False	NA	NA	False	AAAAAG	-40	NA	34899734	34927303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918732_34918842_34919907_34919943_34924983_34925126_34927140
transcript_29169.nic	chr19	+	2323	18	ISM	ENSMUSG00000024795.12	ENSMUST00000223907.2	5423	32	-57	28078	-26	10725	5prime_fragment	FALSE	canonical	3	103	junction_1	63.9679309792933	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGGAAAAGATTAAATGA	NA	False	NA	NA	False	AATGAA	-43	NA	34899734	34925067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918732_34918842_34919907_34919943_34924983
transcript_29172.nic	chr19	+	1866	14	ISM	ENSMUSG00000024795.12	ENSMUST00000087341.7	5564	32	-26	35898	-26	2895	5prime_fragment	FALSE	canonical	3	103	junction_1	63.9200684286946	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAGAAAAATTAACATTGG	NA	False	NA	NA	False	AATAAA	-18	NA	34899734	34917237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187
transcript_29176.known	chr19	+	573	4	FSM	ENSMUSG00000024795.12	ENSMUST00000225151.2	573	4	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	99.267315869827	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCGGTGTACTTTATAAG	9226	False	NA	2	True	AATAAA	-13	NA	34947480	34953134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_34947518_34950258_34950410_34951827_34951971_34952892
transcript_29177.known	chr19	+	5423	32	FSM	ENSMUSG00000024795.12	ENSMUST00000223907.2	5423	32	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	62.1311593110583	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTATAAGGCTCTTAAACT	NA	False	NA	13	True	AATAAA	-24	NA	34899791	34953145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_34899834_34902024_34902173_34906260_34906348_34906426_34906544_34907083_34907223_34908954_34909140_34911813_34911851_34912307_34912533_34913025_34913138_34914176_34914249_34914337_34914485_34914713_34914874_34915652_34915941_34917187_34917328_34917492_34917632_34918732_34918842_34919907_34919943_34924983_34925126_34927140_34928375_34928890_34929030_34930270_34930391_34932111_34932173_34933350_34933477_34934816_34934945_34936815_34936972_34943446_34943624_34945515_34945627_34947319_34947518_34949796_34949899_34950258_34950410_34951827_34951971_34952892
transcript_2918.nnic	chr1	+	2329	8	NNC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	26	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	4	junction_7	69.1452183776275	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	10	True	AATAAA	-19	NA	165957934	165994079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715_165992854_165992911
transcript_29182.nic	chr19	+	974	11	NIC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	-25	137	combination_of_known_junctions	FALSE	canonical	3	67	junction_7	297.230701644362	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAAAGACTAACAGCTTA	NA	False	NA	20	True	AATAAA	-16	NA	36061090	36082015	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077640_36078208_36078239_36078633_36078672_36079220_36079301_36081735
transcript_29183.nic	chr19	+	1136	11	NIC	ENSMUSG00000024800.9	novel	1145	11	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_7	297.230701644362	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTTTTAAATTTTACTA	NA	False	NA	NA	False	AATAAA	-26	NA	36061090	36082177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077640_36078208_36078239_36078633_36078672_36079220_36079301_36081735
transcript_29184.known	chr19	+	1145	11	FSM	ENSMUSG00000024800.9	ENSMUST00000025714.9	1145	11	0	0	0	0	multi-exon	FALSE	canonical	3	930	junction_4	72.6416547168359	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGATTTTTAAATTTTACTA	NA	False	NA	NA	False	AATAAA	-26	NA	36061130	36082177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_36061219_36062465_36062522_36064358_36064416_36064723_36064799_36066538_36066611_36071775_36071866_36077571_36077689_36078208_36078239_36078633_36078672_36079220_36079301_36081735
transcript_2919.known	chr1	+	2515	7	FSM	ENSMUSG00000000544.15	ENSMUST00000060833.14	2515	7	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_6	19.1398362932741	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	10	True	AATAAA	-19	NA	165957806	165994079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
transcript_29196.known	chr19	+	1626	10	FSM	ENSMUSG00000024805.17	ENSMUST00000225411.2	1626	10	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_8	28.4843470118477	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAACCCAAAATGCC	NA	False	NA	-6	True	AATAAA	-6	NA	36387147	36433592	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_36387310_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36427963_36428024_36433020
transcript_29198.nnic	chr19	+	1463	9	NNC	ENSMUSG00000024805.17	novel	430	5	NA	NA	-113	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	39.2037944592102	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGCCAGCTTATTCTTG	NA	False	NA	6	True	AATAAA	-18	NA	36387034	36433604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_36387082_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36433020
transcript_29199.known	chr19	+	1566	9	FSM	ENSMUSG00000024805.17	ENSMUST00000062389.6	1566	9	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_8	19.6580136331217	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAACCCAAAATGCC	NA	False	NA	-6	True	AATAAA	-6	NA	36387147	36433592	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_36387310_36389355_36389637_36411969_36412067_36414554_36414611_36414702_36414763_36417398_36417548_36420243_36420343_36422387_36422478_36433020
transcript_292.known	chr1	+	2553	15	FSM	ENSMUSG00000046101.17	ENSMUST00000171802.8	2553	15	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_12	9.43857694220254	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGGTAAATGTATGATT	NA	False	NA	NA	False	NA	NA	NA	9978862	10011179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_9978916_9981899_9982038_9982134_9982266_9982338_9982399_9985698_9985895_9986540_9986664_9986774_9986880_9989244_9989371_9990659_9990898_9994281_9994488_10001005_10001173_10002226_10002407_10004147_10004291_10007220_10007331_10010602
transcript_29201.known	chr19	-	2725	2	FSM	ENSMUSG00000067279.4	ENSMUST00000087321.4	2725	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGAGAATGTTTTCTTTCC	NA	False	NA	1	True	AATAAA	-17	NA	36714053	36709130	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_36711755_36713952
transcript_29202.known	chr19	+	1809	6	FSM	ENSMUSG00000023307.15	ENSMUST00000024078.15	1809	6	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_3	49.1747902893342	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAGTGTACTTTTGACTCG	NA	False	NA	25	True	ATTAAA	-33	NA	37184941	37199550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_37185304_37188069_37188273_37194581_37194713_37197701_37197886_37198037_37198205_37198788
transcript_29206.known	chr19	+	1293	5	FSM	ENSMUSG00000023307.15	ENSMUST00000112391.8	1293	5	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_3	54.8475158963467	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATACTGTTTCCTGTCATC	NA	False	NA	12	True	AATAAA	-20	NA	37184966	37198475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_37185304_37188069_37188273_37194581_37194713_37197701_37197886_37198037
transcript_2921.nic	chr1	+	2170	6	NIC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	11	0	intron_retention	FALSE	canonical	3	10	junction_1	77.1974092829546	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	10	True	AATAAA	-19	NA	165957996	165994079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_165958174_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
transcript_29210.known	chr19	+	1033	4	FSM	ENSMUSG00000023307.15	ENSMUST00000128530.2	1033	4	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	327.21484617229	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAACAAACCCAGAAATGTA	NA	False	NA	-7	True	NA	NA	NA	37194588	37199376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_37194713_37197701_37197886_37198067_37198205_37198788
transcript_29211.known	chr19	-	5059	25	FSM	ENSMUSG00000056999.17	ENSMUST00000131070.3	5059	25	0	0	0	0	multi-exon	TRUE	canonical	3	707	junction_13	63.1947496940125	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCGCTTTGTGTTGTGTG	NA	False	NA	-2	True	AATAAA	-18	NA	37340010	37246141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_37248237_37248903_37248972_37249553_37249627_37253913_37253976_37255139_37255413_37257983_37258152_37261519_37261632_37262604_37262697_37264511_37264633_37265496_37265608_37268068_37268214_37273281_37273365_37275450_37275574_37281292_37281396_37287186_37287291_37289481_37289563_37290908_37291001_37291378_37291472_37292232_37292396_37292803_37292917_37295375_37295499_37302546_37302717_37306379_37306588_37307826_37308012_37339912
transcript_29213.known	chr19	-	642	1	FSM	ENSMUSG00000080885.2	ENSMUST00000121321.2	642	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGGCTTCAATAGTTCTC	NA	False	NA	NA	False	AATATA	-45	NA	37273195	37272553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_37272600_37273200
transcript_29214.known	chr19	+	4819	22	FSM	ENSMUSG00000012443.5	ENSMUST00000012587.4	4819	22	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_17	34.0452546631592	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGTGCTGCCTGTACAT	NA	False	NA	8	True	ATTAAA	-15	NA	37364850	37410307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_37365116_37372687_37372821_37372989_37373088_37373179_37373259_37375464_37375651_37375758_37375884_37378759_37378851_37379096_37379340_37382132_37382229_37386566_37386656_37390652_37390741_37391908_37392098_37392561_37392770_37395441_37395615_37397923_37398050_37398173_37398333_37398974_37399082_37399778_37400059_37401568_37401792_37404937_37405081_37406348_37406466_37408706
transcript_29216.nic	chr19	+	2249	15	ISM	ENSMUSG00000012443.5	ENSMUST00000012587.4	4819	22	-60	12258	-60	3830	5prime_fragment	TRUE	canonical	3	286	junction_7	24.9089157056796	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACACATGTTTTCTTCTTT	NA	False	NA	NA	False	NA	NA	NA	37364790	37398049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_37365116_37372687_37372821_37372989_37373088_37373179_37373259_37375464_37375651_37375758_37375884_37378759_37378851_37379096_37379340_37382132_37382229_37386566_37386656_37390652_37390741_37391908_37392098_37392561_37392770_37395441_37395615_37397923
transcript_29218.nnic	chr19	+	1880	7	NNC	ENSMUSG00000012443.5	novel	4819	22	NA	NA	-60	-16223	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_6	128.029618968945	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTTCCCAAGGCAGTTG	NA	False	NA	NA	False	AATAAA	-11	NA	37364790	37377996	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_37365116_37372687_37372821_37372989_37373088_37373179_37373259_37375464_37375651_37375758_37375884_37377062
transcript_2922.nnic	chr1	+	2506	6	NNC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	21483	0	intron_retention	FALSE	canonical	2	8	junction_1	77.9717897704035	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	10	True	AATAAA	-19	NA	165979518	165994079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_165980032_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715
transcript_29221.known	chr19	-	1748	1	FSM	ENSMUSG00000102353.2	ENSMUST00000192635.2	1748	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTATTTCTAAGTCCAT	NA	False	NA	NA	False	AGTAAA	-2	NA	37423104	37421356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_37421400_37423100
transcript_29224.known	chr19	+	1802	4	FSM	ENSMUSG00000024986.13	ENSMUST00000025944.9	1802	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	4.18993502999218	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTGTGCACGCGTGT	NA	False	NA	79	True	NA	NA	NA	37423257	37429179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_37423682_37425636_37425816_37426014_37426066_37428031
transcript_29227.known	chr19	+	3543	22	FSM	ENSMUSG00000053799.9	ENSMUST00000066439.8	3543	22	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_16	11.2298193902402	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCGGAGATTCTCATTTC	1869	False	NA	29	True	ATTAAA	-34	NA	37538865	37672507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_37539014_37558830_37559003_37560040_37560089_37560305_37560397_37562159_37562206_37565383_37565589_37566867_37567024_37570640_37570710_37574258_37574343_37576085_37576133_37576264_37576386_37578298_37578371_37579315_37579414_37582109_37582216_37585542_37585653_37587013_37587126_37588006_37588142_37597373_37597554_37628069_37628212_37641830_37641905_37670107_37670221_37671293
transcript_29229.known	chr19	+	2692	22	FSM	ENSMUSG00000053799.9	ENSMUST00000238817.2	2692	22	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	21.0093381678108	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCTGCTTGCATTTTTT	1910	False	NA	NA	False	AATAAA	-38	NA	37538906	37671703	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_37539014_37558830_37559003_37560046_37560089_37560305_37560397_37562159_37562206_37565383_37565589_37566867_37567024_37570640_37570710_37574258_37574343_37576085_37576133_37576264_37576386_37578298_37578371_37579315_37579414_37582109_37582216_37585542_37585653_37587013_37587126_37588006_37588142_37597373_37597554_37628069_37628212_37641830_37641905_37670107_37670221_37671293
transcript_2923.nnic	chr1	+	1944	5	NNC	ENSMUSG00000000544.15	novel	2515	7	NA	NA	24505	0	intron_retention	FALSE	canonical	3	12	junction_1	75.0083328704218	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTTTGTTCACCCATC	NA	False	NA	10	True	AATAAA	-19	NA	165982540	165994079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_165982709_165985081_165985238_165991341_165991462_165992148_165992285_165992715
transcript_29234.nnic	chr19	+	2498	10	NNC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	-58	0	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_2	90.951078967938	58	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTAGTATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	38043400	38062871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_38043530_38045857_38045901_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_29238.known	chr19	+	2442	10	FSM	ENSMUSG00000024989.16	ENSMUST00000236044.2	2442	10	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	104.602716958317	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTAGTATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	38043484	38062871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_38043530_38045857_38045929_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_29242.nic	chr19	+	2588	10	NIC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	-58	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_2	84.0640555296898	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTAGTATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	38043400	38062871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_38043530_38045857_38045991_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_29245.nnic	chr19	+	2565	10	NNC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_3	125.402463204587	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTAGTATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	38043458	38062871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_38043530_38045857_38046015_38046236_38046432_38048517_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_29246.nic	chr19	+	2612	10	NIC	ENSMUSG00000024989.16	novel	2442	10	NA	NA	-58	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_2	88.367917758024	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTAGTATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	38043400	38062871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_38043530_38045857_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_29248.nnic	chr19	+	2621	10	NNC	ENSMUSG00000024989.16	novel	2757	10	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_2	109.160432391962	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGTCTAGTATGTGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	38043513	38062871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_38043766_38045857_38045901_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_2925.known	chr1	+	787	4	FSM	ENSMUSG00000000544.15	ENSMUST00000027847.7	787	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	86.0736119067085	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGTTTTCTTTCTCGGTG	NA	False	NA	NA	False	AATAAA	-20	NA	165957985	165981705	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165981478
transcript_29250.known	chr19	+	2683	10	FSM	ENSMUSG00000024989.16	ENSMUST00000237408.2	2683	10	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_9	135.940982110929	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043536	38062869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_38043766_38045857_38045991_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061748
transcript_29252.known	chr19	+	2757	10	FSM	ENSMUSG00000024989.16	ENSMUST00000169673.3	2757	10	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	107.147988119351	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTGTCTAGTATGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	38043489	38062869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_38043766_38045857_38046015_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061745
transcript_29255.known	chr19	+	1440	9	FSM	ENSMUSG00000024989.16	ENSMUST00000116506.8	1440	9	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_8	149.494512859168	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAACCATTCTTGCCTTTG	NA	False	NA	NA	False	NA	NA	NA	38043487	38061946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_38043530_38046236_38046432_38048528_38048805_38051050_38051120_38057527_38057679_38058087_38058399_38059518_38059591_38060212_38060339_38061748
transcript_29256.known	chr19	+	1401	3	FSM	ENSMUSG00000054200.8	ENSMUST00000067098.8	1401	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATAAATCTCTATCTTGTGA	NA	False	NA	NA	False	NA	NA	NA	38085518	38102711	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_38086142_38095829_38095959_38102062
transcript_29257.known	chr19	-	937	6	FSM	ENSMUSG00000024990.14	ENSMUST00000112335.4	937	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_5	4.31740662898458	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTCCTATGAGTTGAAGA	5209	False	NA	-5	True	ATTAAA	-13	NA	38113276	38105077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_38105358_38106719_38106933_38112476_38112584_38112743_38112881_38112966_38113096_38113205
transcript_29258.known	chr19	-	1402	14	FSM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_2	36.3583414649629	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCAGAGTCTTTCCT	NA	False	NA	-7	True	AATAAA	-20	NA	38212586	38176928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_38177249_38178276_38178356_38184144_38184184_38188007_38188127_38189994_38190038_38193143_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
transcript_29260.nnic	chr19	-	1456	14	NNC	ENSMUSG00000054237.7	novel	1402	14	NA	NA	9	0	at_least_one_novel_splicesite	TRUE	canonical	3	4	junction_13	98.2574206360984	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCAGAGTCTTTCCT	NA	False	NA	-7	True	AATAAA	-20	NA	38212577	38176928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_38177249_38178276_38178356_38184144_38184184_38188007_38188127_38189994_38190038_38193143_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210425_38212409
transcript_29262.nic	chr19	-	1019	9	ISM	ENSMUSG00000054237.7	ENSMUST00000067167.6	1402	14	-64	16062	-46	0	5prime_fragment	FALSE	canonical	3	315	junction_8	31.196954979613	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGTCTTTAGCATTATGG	NA	False	NA	NA	False	AATAAA	-10	NA	38212650	38192990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_-_38193258_38195710_38195757_38201808_38201894_38202821_38202906_38204278_38204356_38207905_38207952_38208079_38208176_38210284_38210362_38212409
transcript_29264.known	chr19	+	3474	3	FSM	ENSMUSG00000044026.4	ENSMUST00000054098.4	3474	3	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_1	3	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGTGTCTCACGACTCGT	NA	False	NA	35	True	AATAAA	-36	NA	38384427	38394058	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_38384750_38388881_38389063_38391087
transcript_29266.known	chr19	-	3977	21	FSM	ENSMUSG00000024999.8	ENSMUST00000025963.8	3977	21	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	18.6711006638602	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTAGTCTTACGAGGTT	2288	False	NA	NA	False	AATAAA	-17	NA	38807681	38776571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_38778142_38778731_38778817_38781144_38781243_38782548_38782678_38783415_38783598_38783929_38784002_38784081_38784146_38784240_38784314_38787341_38787443_38787753_38787835_38792842_38792975_38795530_38795660_38795969_38796146_38798451_38798546_38798741_38798904_38800787_38800919_38802524_38802579_38803129_38803288_38804026_38804160_38806381_38806590_38807536
transcript_2927.known	chr1	+	2227	8	FSM	ENSMUSG00000000544.15	ENSMUST00000166860.2	2227	8	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_7	70.4990953770301	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTTCTTTGTTCACCCAT	NA	False	NA	9	True	AATAAA	-18	NA	165958035	165994078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_165958174_165974207_165974363_165980136_165980354_165985081_165985238_165991341_165991462_165992148_165992285_165992715_165992866_165992923
transcript_29275.known	chr19	+	5868	22	FSM	ENSMUSG00000025001.12	ENSMUST00000025965.12	5868	22	0	0	0	0	multi-exon	TRUE	canonical	3	1554	junction_5	143.18806117019	398	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGATGACTTCATCCCA	NA	False	NA	NA	False	AAGAAA	-5	NA	38919358	38959495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_38919520_38919834_38919957_38923857_38923981_38926849_38926907_38928914_38928952_38929040_38929106_38930897_38930937_38932157_38932386_38933834_38934018_38935168_38935313_38938631_38938829_38940278_38940376_38941986_38942149_38943134_38943275_38943357_38943497_38945478_38945563_38945641_38945762_38947487_38947605_38948112_38948273_38953040_38953138_38953850_38953928_38956176
transcript_2928.known	chr1	-	1546	12	FSM	ENSMUSG00000040629.9	ENSMUST00000038782.4	1546	12	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_10	4.55453638177285	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGCACTCTTGCTTGTT	NA	False	NA	-7	True	ATTAAA	-22	NA	166066313	166028953	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_166029305_166029843_166029920_166032358_166032492_166033421_166033485_166053158_166053301_166053405_166053461_166054134_166054260_166061733_166061776_166062969_166063126_166064441_166064542_166065831_166065925_166066103
transcript_2929.nnic	chr1	-	1195	7	NNC	ENSMUSG00000026558.14	novel	4731	7	NA	NA	11030	144	at_least_one_novel_splicesite	FALSE	canonical	2	45	junction_6	361.009541271265	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGGATCTATTTTTGTGT	NA	False	NA	-28	True	TATAAA	-29	NA	167101140	167053651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057_167065218_167100931
transcript_29293.known	chr19	-	2571	7	FSM	ENSMUSG00000055044.13	ENSMUST00000068439.13	2571	7	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_3	18.3938395484285	354	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGCTGTTCCTGGAAGTG	NA	False	NA	NA	False	NA	NA	NA	40260060	40209616	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_40211216_40211494_40211613_40218950_40219103_40231849_40232044_40238062_40238148_40240353_40240506_40259789
transcript_29298.nic	chr19	-	2591	23	NIC	ENSMUSG00000025006.19	novel	2582	24	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	16.9725105892581	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCCCAGTCTTTACCCAC	9857	False	NA	NA	False	NA	NA	NA	40502226	40283196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_40283561_40284975_40285089_40287906_40287966_40300112_40300308_40302807_40302934_40303060_40303176_40306465_40306513_40313190_40313277_40315893_40316067_40325429_40325480_40338342_40338458_40340720_40340851_40340961_40341010_40351645_40351710_40353437_40353611_40358133_40358164_40361919_40362062_40370964_40371078_40381831_40381961_40386985_40387055_40390701_40390755_40439757_40439843_40502114
transcript_2930.known	chr1	-	4731	7	FSM	ENSMUSG00000026558.14	ENSMUST00000053686.9	4731	7	0	0	0	0	multi-exon	FALSE	canonical	3	994	junction_5	17.625738755203	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTTTGTGGGTGCCTGGT	NA	False	NA	0	True	AATAAA	-32	NA	167112889	167050451	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_167054091_167055300_167055350_167057461_167057560_167062260_167062404_167064171_167064269_167065057_167065218_167112344
transcript_29300.known	chr19	-	3427	19	FSM	ENSMUSG00000025007.14	ENSMUST00000176939.8	3427	19	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_12	241.939820085925	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	-11	True	AATAAA	-18	NA	40576813	40538700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562660_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40574570_40574637_40576753
transcript_29301.nic	chr19	-	3410	18	NIC	ENSMUSG00000025007.14	novel	3527	19	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	88	junction_17	265.434357090177	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCACAGTTCGTTTTCTC	NA	False	NA	-11	True	AATAAA	-18	NA	40576856	40538700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_40539774_40541967_40542064_40543034_40543222_40545862_40545985_40546094_40546291_40551345_40551484_40553279_40553501_40555015_40555110_40556765_40556840_40557476_40557622_40558911_40559037_40562214_40562306_40562654_40562814_40566021_40566127_40566215_40566366_40568305_40568521_40573933_40574050_40576753
transcript_29307.known	chr19	-	2743	14	FSM	ENSMUSG00000025008.16	ENSMUST00000025981.15	2743	14	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_10	4.39337855732112	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGACTTTTTTTCTTG	NA	False	NA	-1	True	CATAAA	-17	NA	40600677	40584889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_40585987_40591248_40591387_40593749_40593904_40594146_40594242_40594669_40594778_40595721_40595848_40596069_40596151_40596663_40596700_40597135_40597252_40597345_40597455_40597645_40597777_40599737_40599857_40600094_40600219_40600368
transcript_29309.known	chr19	-	1686	12	FSM	ENSMUSG00000025008.16	ENSMUST00000135795.8	1686	12	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	4.71501908359634	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAGTTCTCAACCCATG	NA	False	NA	NA	False	AATAAA	-15	NA	40600647	40593541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_40593904_40594146_40594242_40594669_40594778_40595721_40595848_40596069_40596151_40596663_40596700_40597135_40597252_40597345_40597455_40597645_40597777_40599737_40599857_40600094_40600219_40600368
transcript_29310.nnic	chr19	-	626	3	NNC	ENSMUSG00000061132.14	novel	1701	17	NA	NA	58642	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_2	6.5	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTGATGCATTTTCAG	NA	False	NA	NA	False	AATAAA	-16	NA	40923949	40917370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_40917737_40922870_40923027_40923845
transcript_29311.nic	chr19	+	639	5	ISM	ENSMUSG00000025019.18	ENSMUST00000067795.13	4833	8	-3	16118	-3	-13025	5prime_fragment	FALSE	canonical	3	83	junction_3	9.51314879522022	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATTGTCCTCTTTAATTT	NA	False	NA	NA	False	ATTAAA	-22	NA	41471072	41534582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_41471223_41471965_41472040_41516459_41516526_41516999_41517080_41534313
transcript_29312.known	chr19	-	5103	12	FSM	ENSMUSG00000025154.16	ENSMUST00000026150.15	5103	12	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	42.9826026693522	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGGGTTCTGACTGGTC	4527	False	NA	NA	False	ATTAAA	-17	NA	41790486	41755026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_41758636_41761488_41761568_41762504_41762616_41767548_41767648_41769596_41769789_41770769_41770836_41772764_41772852_41773210_41773438_41774996_41775207_41776744_41776826_41780185_41780452_41790410
transcript_29315.known	chr19	-	4340	34	FSM	ENSMUSG00000035049.5	ENSMUST00000038677.5	4340	34	0	0	0	0	multi-exon	TRUE	canonical	3	269	junction_16	39.9184430265499	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGATGAGTGGCTTGGC	NA	False	NA	-8	True	AATAAA	-20	NA	41884612	41851289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_41851752_41853610_41853694_41853959_41854028_41855144_41855212_41857208_41857259_41859248_41859375_41859573_41859744_41859860_41860029_41860171_41860264_41861347_41861506_41862181_41862290_41862674_41862781_41862967_41863049_41863155_41863315_41864973_41865068_41865539_41865608_41865774_41865930_41866222_41866386_41866467_41866533_41868540_41868663_41868797_41868941_41870597_41870713_41871861_41871960_41872151_41872264_41874085_41874178_41874525_41874625_41875238_41875367_41875449_41875589_41878204_41878322_41878507_41878614_41879522_41879600_41880976_41881061_41883586_41883817_41884377
transcript_2932.known	chr1	+	1573	7	FSM	ENSMUSG00000052428.11	ENSMUST00000195015.6	1573	7	0	0	0	0	multi-exon	FALSE	canonical	3	491	junction_3	23.6108496717552	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTGTCTCCTGTTCAAA	NA	False	NA	15	True	AATAAA	-22	NA	167135946	167158354	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_167136503_167136874_167136953_167141675_167141736_167143811_167143859_167146830_167146899_167153444_167153590_167157735
transcript_29320.known	chr19	+	1775	4	FSM	ENSMUSG00000011752.8	ENSMUST00000011896.8	1775	4	0	0	0	0	multi-exon	FALSE	canonical	3	5418	junction_2	350.959003620398	5607	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTACTGTTTGTCTTGTGT	4060	False	NA	0	True	AATAAA	-17	NA	41900361	41907099	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_41900626_41904043_41904319_41905081_41905263_41906044
transcript_29322.known	chr19	+	617	4	FSM	ENSMUSG00000011752.8	ENSMUST00000237510.2	617	4	0	0	0	0	multi-exon	FALSE	canonical	2	120	junction_1	2583.95063592339	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTGCGCAAAGCCATGGAAG	4175	False	NA	NA	False	NA	NA	NA	41900476	41906162	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_41900561_41904084_41904319_41905081_41905263_41906044
transcript_29328.known	chr19	-	1018	8	FSM	ENSMUSG00000034321.15	ENSMUST00000075280.12	1018	8	0	0	0	0	multi-exon	FALSE	canonical	3	822	junction_7	62.4257926808842	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTGGAAAAAATTCTTT	NA	False	NA	-33	True	TATAAA	-22	NA	41921735	41912004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921487_41921604_41921690
transcript_29333.nnic	chr19	-	1075	8	NNC	ENSMUSG00000034321.15	novel	1018	8	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_6	317.627107772364	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTGGAAAAAATTCTTT	NA	False	NA	-33	True	TATAAA	-22	NA	41921753	41912004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41916463_41916553_41919794_41919870_41921448_41921604_41921690
transcript_2934.known	chr1	+	1122	7	FSM	ENSMUSG00000052428.11	ENSMUST00000193446.6	1122	7	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	167.36951800001	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTGTCTCCTGTTCAAA	NA	False	NA	15	True	AATAAA	-22	NA	167136238	167158354	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_167136344_167136874_167136953_167141675_167141736_167143811_167143859_167146830_167146899_167153444_167153590_167157735
transcript_29342.nnic	chr19	-	947	7	NIC	ENSMUSG00000034321.15	novel	1018	8	NA	NA	-16	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_4	328.565569305935	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGACTGGAAAAAATTCTTT	NA	False	NA	-33	True	TATAAA	-22	NA	41921753	41912004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_41912528_41913149_41913235_41913627_41913679_41914970_41915005_41919794_41919870_41921487_41921604_41921690
transcript_29346.known	chr19	-	2296	6	FSM	ENSMUSG00000034321.15	ENSMUST00000112123.4	2296	6	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_3	310.084246616948	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGAGTCCGTTCTCT	NA	False	NA	NA	False	NA	NA	NA	41921862	41910730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_41912528_41913149_41913235_41913627_41913679_41919794_41919870_41921487_41921604_41921690
transcript_29349.known	chr19	-	1504	2	FSM	ENSMUSG00000034321.15	ENSMUST00000237177.2	1504	2	0	0	0	0	multi-exon	FALSE	canonical	3	822	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	41921737	41920146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_41921604_41921690
transcript_29350.known	chr19	-	6607	31	FSM	ENSMUSG00000025159.9	ENSMUST00000171561.8	6607	31	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_15	35.2197703317643	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACCTTGTCCCATAACAAG	NA	False	NA	NA	False	AATAAA	-16	NA	41969596	41929524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_41933020_41933095_41933197_41933767_41933828_41933897_41934063_41934171_41934255_41935355_41935543_41936128_41936186_41936654_41936756_41937893_41938021_41938207_41938277_41938419_41938523_41939190_41939291_41940845_41941002_41942107_41942258_41942355_41942457_41942904_41942987_41943171_41943298_41943556_41943636_41943857_41944013_41944261_41944401_41944947_41945026_41945579_41945655_41946296_41946384_41951238_41951301_41951388_41951518_41951839_41951910_41952301_41952377_41952756_41952843_41954652_41954754_41958141_41958191_41969437
transcript_29356.nic	chr19	+	1934	12	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	-55	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_8	134.380796050282	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4074	False	NA	18	True	AATAAA	-24	NA	41921863	41932543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41928295_41928344_41929088_41929175_41929954_41930079_41930374_41930446_41932020
transcript_29361.nic	chr19	+	1974	11	NIC	ENSMUSG00000025157.9	novel	1821	11	NA	NA	-55	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	121.95691862293	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4074	False	NA	18	True	AATAAA	-24	NA	41921863	41932543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927158_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
transcript_29365.known	chr19	+	1821	11	FSM	ENSMUSG00000025157.9	ENSMUST00000026154.9	1821	11	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_7	37.0513157661101	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTAGCTTCTCTGTGCCTCG	4139	False	NA	18	True	AATAAA	-24	NA	41921928	41932543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_41922105_41923176_41923323_41926041_41926290_41926461_41926657_41926802_41926892_41927246_41927276_41928038_41928173_41929088_41929175_41929954_41930079_41930374_41930446_41932020
transcript_29376.nnic	chr19	+	1390	3	NNC	ENSMUSG00000025171.3	novel	1529	3	NA	NA	-273	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	51	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTAGCACATGACTTCC	NA	False	NA	10	True	AATAAA	-16	NA	41969928	42023082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_41970036_42020327_42020556_42022027
transcript_29377.known	chr19	+	1529	3	FSM	ENSMUSG00000025171.3	ENSMUST00000026170.3	1529	3	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	5.5	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTAGCACATGACTTCC	NA	False	NA	10	True	AATAAA	-16	NA	41970201	42023082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_41970448_42020327_42020556_42022027
transcript_29378.known	chr19	+	1668	7	FSM	ENSMUSG00000025176.15	ENSMUST00000081714.5	1668	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	1.5723301886761	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGATCAGATATTTCCA	NA	False	NA	NA	False	NA	NA	NA	42034270	42059392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_42034550_42048326_42048456_42048605_42048734_42049366_42049502_42049741_42049839_42051630_42051765_42058626
transcript_29379.nnic	chr19	-	1921	6	NNC	ENSMUSG00000049670.10	novel	1800	5	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_4	34.0258725090188	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTGTGTTATGAACTTT	4134	False	NA	-3	True	AATAAA	-21	NA	42074802	42063380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42067100_42067216_42074635
transcript_2938.known	chr1	+	2835	11	FSM	ENSMUSG00000026687.15	ENSMUST00000028004.11	2835	11	0	0	0	0	multi-exon	FALSE	canonical	3	593	junction_2	45.3586816386896	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTTGCCGTCTTAATT	NA	False	NA	6	True	ATTAAA	-18	NA	167177559	167196101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_167177986_167180088_167180235_167181995_167182126_167183240_167183376_167184098_167184296_167184878_167185020_167188971_167189161_167189372_167189461_167192076_167192219_167193343_167193457_167194973
transcript_29380.nnic	chr19	-	1904	6	NNC	ENSMUSG00000049670.10	novel	1800	5	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_4	36.2745089560148	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTGTGTTATGAACTTT	4134	False	NA	-3	True	AATAAA	-21	NA	42074802	42063380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42067117_42067216_42074635
transcript_29381.known	chr19	-	1800	5	FSM	ENSMUSG00000049670.10	ENSMUST00000051772.10	1800	5	0	0	0	0	multi-exon	FALSE	canonical	2	63	junction_4	19.0574788468989	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTGTGTTATGAACTTT	4140	False	NA	-3	True	AATAAA	-21	NA	42074796	42063380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_42064695_42064893_42065004_42066403_42066519_42066922_42067023_42074635
transcript_29382.known	chr19	-	1044	3	FSM	ENSMUSG00000018821.4	ENSMUST00000018965.4	1044	3	0	0	0	0	multi-exon	FALSE	canonical	3	851	junction_1	12	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTGTCAGAGTGTGCTAC	NA	False	NA	-5	True	AATAAA	-15	NA	42117498	42111711	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_42112288_42113186_42113466_42117309
transcript_29384.known	chr19	+	5611	13	FSM	ENSMUSG00000018820.14	ENSMUST00000169536.8	5611	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_9	59.023300483792	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGGCTGACTTCAGTTTC	NA	False	NA	NA	False	ATTAAA	-11	NA	42159005	42183029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_42159225_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174058_42174080_42174243_42174389_42177635_42177683_42177960_42178043_42178821
transcript_29386.nic	chr19	+	2605	12	NIC	ENSMUSG00000018820.14	novel	5611	13	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	125	junction_1	17.7223769463382	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTTTGTCAGGTCTCCT	NA	False	NA	7	True	AATAAA	-14	NA	42159117	42180156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_42159225_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174243_42174389_42177635_42177683_42177960_42178043_42178821
transcript_29388.known	chr19	+	2573	12	FSM	ENSMUSG00000018820.14	ENSMUST00000099443.11	2573	12	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	33.3877792261314	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTTTGTCAGGTCTCCT	NA	False	NA	7	True	AATAAA	-14	NA	42159032	42180156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_42159108_42159984_42160183_42165827_42165899_42167727_42167930_42169940_42170037_42171097_42171211_42171866_42172004_42172556_42172629_42174243_42174389_42177635_42177683_42177960_42178043_42178821
transcript_29397.nnic	chr19	-	1333	10	NNC	ENSMUSG00000042401.9	novel	2618	15	NA	NA	-19286	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_9	18.8325958557674	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACCTTTGTGGAAAACTAT	2405	False	NA	-17	True	AATAAA	-17	NA	42295679	42271970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_42272120_42272561_42272706_42275611_42275655_42276291_42276438_42286092_42286262_42286721_42286823_42287595_42287679_42290563_42290701_42293108_42293255_42295464
transcript_29404.known	chr19	+	950	6	FSM	ENSMUSG00000025184.11	ENSMUST00000160107.2	950	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	35.4942248823664	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTCCGTGGCAGGGCAGG	NA	False	NA	NA	False	AAAACA	-29	NA	42507236	42579449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_42507297_42564464_42564641_42570358_42570430_42571263_42571360_42571841_42571983_42579043
transcript_29405.known	chr19	+	4112	7	FSM	ENSMUSG00000025184.11	ENSMUST00000026188.10	4112	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	8.08290376865476	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTACATGTTACCTTAT	NA	False	NA	NA	False	NA	NA	NA	42507197	42580782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_42507297_42550990_42552781_42564464_42564641_42570358_42570430_42571263_42571360_42571841_42571983_42579043
transcript_29406.known	chr19	-	3738	15	FSM	ENSMUSG00000025185.15	ENSMUST00000026190.14	3738	15	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_12	2.28124563181019	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAAATAGATGCTCGCA	NA	False	NA	NA	False	NA	NA	NA	42601252	42582420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_42583844_42585936_42586049_42586383_42586521_42587139_42587256_42588315_42588560_42590611_42590775_42591625_42591794_42592293_42592449_42592570_42592755_42593245_42593466_42593684_42593724_42595008_42595215_42595992_42596172_42596690_42596987_42601156
transcript_29407.known	chr19	-	3119	16	FSM	ENSMUSG00000060224.5	ENSMUST00000076505.4	3119	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	3.5863940416834	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTCGGTCCAGCCTTGGC	NA	False	NA	NA	False	AATAAA	-18	NA	42741214	42714296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_42715429_42716095_42716217_42718060_42718168_42719757_42719913_42722159_42722317_42722521_42722595_42723861_42723997_42724334_42724477_42726527_42726626_42726709_42726772_42728773_42728928_42730946_42731103_42735785_42735860_42735935_42736030_42737822_42737843_42740775
transcript_29410.known	chr19	-	2847	20	FSM	ENSMUSG00000025188.16	ENSMUST00000162004.8	2847	20	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_19	17.2102848848348	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTATTTGTGTGTGTACA	NA	False	NA	88	True	NA	NA	NA	42768417	42743543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_42744236_42744696_42744780_42746231_42746346_42748144_42748290_42748802_42748869_42748948_42749084_42749450_42749513_42750534_42750715_42750831_42751000_42752233_42752284_42754351_42754422_42754568_42754656_42755148_42755273_42755556_42755718_42758044_42758154_42759192_42759336_42759555_42759694_42766560_42766723_42766992_42767086_42768352
transcript_29414.known	chr19	-	2058	9	FSM	ENSMUSG00000025190.14	ENSMUST00000026196.14	2058	9	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_5	49.6934351801121	592	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTTTGTGATCCATTCA	8317	False	NA	-3	True	NA	NA	NA	43513044	43488190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_43488997_43491346_43491490_43492960_43493127_43493214_43493366_43495360_43495466_43495760_43495874_43496308_43496433_43504119_43504302_43512776
transcript_29420.known	chr19	+	1829	9	FSM	ENSMUSG00000025192.14	ENSMUST00000144314.2	1829	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	3.11247489949718	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACATAAACAATGGTTATT	2807	False	NA	NA	False	ATTAAA	-33	NA	43678278	43711013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_43678344_43678617_43678721_43679456_43679640_43692637_43692844_43693318_43693470_43700173_43700278_43704712_43704770_43705888_43706023_43710187
transcript_29421.known	chr19	+	1233	9	FSM	ENSMUSG00000025193.15	ENSMUST00000112047.10	1233	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	5.45435605731786	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATAGTCTCAGGTTCTTTC	9274	False	NA	16	True	AATAAA	-19	NA	43741536	43757077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_43741660_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751311_43751446_43753398_43753427_43755639_43755746_43756613
transcript_29422.known	chr19	+	1298	9	FSM	ENSMUSG00000025193.15	ENSMUST00000026199.14	1298	9	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	8.4400459121974	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGTTATAGTCTCAGG	9172	False	NA	9	True	AATAAA	-12	NA	43741434	43757070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_43741660_43744058_43744131_43747166_43747227_43748288_43748499_43749127_43749164_43751341_43751446_43753398_43753427_43755639_43755746_43756613
transcript_29423.known	chr19	-	4798	9	FSM	ENSMUSG00000040018.10	ENSMUST00000045562.6	4798	9	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_3	36.2782217728488	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTTTTGAACATACTAAT	NA	False	NA	NA	False	NA	NA	NA	43741439	43721692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_43725292_43726475_43726590_43728275_43728431_43730271_43730354_43732055_43732224_43735174_43735362_43737228_43737352_43739782_43739974_43741260
transcript_29429.known	chr19	-	3901	14	FSM	ENSMUSG00000025195.10	ENSMUST00000212592.2	3901	14	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_13	13.2052526755398	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGAGTGTGTTTCCTTC	NA	False	NA	-6	True	AATAAA	-14	NA	43868207	43835260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_43836718_43838214_43838766_43840662_43840862_43842571_43842752_43843235_43843569_43844940_43845070_43855027_43855133_43855965_43856097_43857243_43857444_43858027_43858046_43858600_43858749_43862596_43862697_43863265_43863460_43868051
transcript_29431.known	chr19	-	1828	9	FSM	ENSMUSG00000025196.5	ENSMUST00000026210.5	1828	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	10.3191266587827	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGCCACTTGCATGCCT	5862	False	NA	3	True	ATTAAA	-22	NA	43974995	43944745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_43945076_43948424_43948544_43952169_43952270_43954613_43954754_43956891_43957004_43958440_43958624_43962371_43962528_43969241_43969439_43974504
transcript_29433.nnic	chr19	-	1481	8	NNC	ENSMUSG00000025196.5	novel	1828	9	NA	NA	-7128	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	14.6231574803076	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGCCACTTGCATGCCT	4423	False	NA	3	True	ATTAAA	-22	NA	43964260	43944745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_43945076_43948424_43948544_43952169_43952270_43954613_43954754_43956891_43957004_43958440_43958624_43962371_43962528_43963919
transcript_29436.nnic	chr19	-	1048	3	NNC	ENSMUSG00000025197.10	novel	1916	9	NA	NA	21622	0	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_2	6.5	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTTGTATGTTTGACT	9573	False	NA	NA	False	AATAAA	-18	NA	43996016	43993460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_43994062_43995462_43995605_43995711
transcript_29437.nnic	chr19	-	981	3	NNC	ENSMUSG00000025197.10	novel	1916	9	NA	NA	21495	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	7	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTTTGTATGTTTGACT	9446	False	NA	NA	False	AATAAA	-18	NA	43996143	43993460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_43994062_43995462_43995605_43995905
transcript_29438.known	chr19	-	3228	12	FSM	ENSMUSG00000025198.17	ENSMUST00000071698.13	3228	12	0	0	0	0	multi-exon	TRUE	canonical	3	64	junction_11	39.5783562189201	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTGTGTTCTATTTTC	NA	False	NA	-2	True	AATAAA	-19	NA	44058214	44023382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058027
transcript_29439.known	chr19	-	3136	12	FSM	ENSMUSG00000025198.17	ENSMUST00000112028.10	3136	12	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_11	27.8217466521579	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTGTGTGTTCTATTTTC	NA	False	NA	-2	True	AATAAA	-19	NA	44058224	44023382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_44025588_44027611_44027692_44029185_44029276_44036073_44036166_44037560_44037620_44044560_44044635_44047489_44047616_44050281_44050344_44051457_44051505_44056038_44056121_44057710_44057835_44058129
transcript_29440.known	chr19	-	2083	2	FSM	ENSMUSG00000025198.17	ENSMUST00000170577.2	2083	2	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	44058183	44054510	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_44056121_44057710
transcript_29441.nnic	chr19	-	3381	21	NNC	ENSMUSG00000025199.17	novel	3502	21	NA	NA	103	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_20	66.1814739938603	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAATCTCTACTCATTT	NA	False	NA	-1	True	ATTAAA	-15	NA	44095618	44061773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_44062980_44063869_44063970_44065684_44065819_44066731_44066880_44067327_44067425_44070384_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095546
transcript_29442.known	chr19	-	3502	21	FSM	ENSMUSG00000025199.17	ENSMUST00000026217.11	3502	21	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_2	31.5901883501824	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAATCTCTACTCATTT	NA	False	NA	-1	True	ATTAAA	-15	NA	44095919	44061773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_44062980_44063869_44063970_44065684_44065819_44066731_44066880_44067327_44067425_44070384_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095726
transcript_29445.known	chr19	-	3481	21	FSM	ENSMUSG00000025199.17	ENSMUST00000119591.2	3481	21	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_2	45.2515193115104	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTGAATCTCTACTCATT	NA	False	NA	-2	True	ATTAAA	-14	NA	44095916	44061774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_44062980_44063869_44063970_44065701_44065819_44066731_44066880_44067327_44067425_44070384_44070435_44071024_44071135_44072855_44072918_44075346_44075499_44076354_44076479_44077113_44077217_44079371_44079567_44084662_44084799_44085347_44085456_44085641_44085767_44085880_44085971_44087023_44087113_44088588_44088659_44090175_44090291_44092096_44092192_44095726
transcript_29447.known	chr19	-	3581	14	FSM	ENSMUSG00000025200.8	ENSMUST00000026218.7	3581	14	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_12	11.4813973542901	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACTCACTGTAGAAACCAG	NA	False	NA	NA	False	AAAAAG	-2	NA	44124315	44097075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_44099100_44101387_44101486_44102112_44102233_44102962_44103173_44109311_44109392_44110287_44110400_44111582_44111724_44113246_44113332_44115804_44115924_44117636_44117852_44119850_44119953_44120524_44120604_44121438_44121524_44124204
transcript_29454.known	chr19	-	885	5	FSM	ENSMUSG00000057506.6	ENSMUST00000079033.6	885	5	0	0	0	0	multi-exon	FALSE	canonical	3	1199	junction_4	51.0165414351071	499	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACAAAACAAATGTGGGT	963	False	NA	NA	False	ATTAAA	-5	NA	44134885	44127697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_44128153_44130562_44130668_44131459_44131580_44134379_44134497_44134797
transcript_29461.nic	chr19	-	799	3	ISM	ENSMUSG00000057506.6	ENSMUST00000237867.2	683	5	-62	834	-15	-834	5prime_fragment	FALSE	canonical	3	1199	junction_2	45	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGGAAAGAAAATAC	948	False	NA	NA	False	NA	NA	NA	44134900	44131000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_-_44131580_44134379_44134497_44134797
transcript_29462.known	chr19	-	683	5	FSM	ENSMUSG00000057506.6	ENSMUST00000237867.2	683	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	551.264625656318	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATATGTAGTAAGTAGCA	1010	False	NA	NA	False	AATAAA	-17	NA	44134838	44130166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_44130467_44130562_44130668_44131459_44131580_44134379_44134497_44134797
transcript_29463.known	chr19	+	3489	6	FSM	ENSMUSG00000025202.9	ENSMUST00000026220.7	3489	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	132.355581673007	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTGGCTCCAGAGTCT	NA	False	NA	NA	False	NA	NA	NA	44191707	44232455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_44191987_44203840_44204124_44222661_44222793_44224209_44224416_44226814_44227048_44230098
transcript_29465.known	chr19	+	655	3	FSM	ENSMUSG00000025202.9	ENSMUST00000237324.2	655	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	4	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGCAGAAATTCTCCTGT	NA	False	NA	7	True	ATTAAA	-25	NA	44226253	44230457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_44226317_44226814_44227048_44230098
transcript_29467.known	chr19	+	5455	6	FSM	ENSMUSG00000025203.7	ENSMUST00000026221.7	5455	6	0	0	0	0	multi-exon	FALSE	canonical	3	2597	junction_1	100.817458805507	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTCGTGGTGTTTTGGCT	1067	False	NA	22	True	AATAAA	-23	NA	44282112	44295303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_44282851_44283342_44283626_44286478_44286610_44288047_44288254_44289650_44289884_44291439
transcript_29471.known	chr19	-	4832	6	FSM	ENSMUSG00000037071.4	ENSMUST00000041331.4	4832	6	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_3	163.124001912655	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGAGCTTTTGTGTGTGGT	-4	True	NA	-5	True	AATAAA	-22	NA	44396148	44382893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_44386558_44388580_44388814_44390131_44390338_44391603_44391735_44394925_44395200_44395824
transcript_29473.known	chr19	-	2142	5	FSM	ENSMUSG00000025204.11	ENSMUST00000171415.8	2142	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	2269.24749366392	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGTTTCTGGATTTTGTAA	1988	False	NA	NA	False	AATAAA	-16	NA	44543865	44537010	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_44538660_44541136_44541293_44542107_44542208_44543369_44543497_44543755
transcript_29478.known	chr19	-	603	5	FSM	ENSMUSG00000025204.11	ENSMUST00000168083.2	603	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_4	2211.89753096747	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTGCTCTGGTTTCTGTGT	1995	False	NA	-20	True	AATAAA	-16	NA	44543858	44538691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_44538852_44541136_44541293_44542107_44542208_44543369_44543454_44543755
transcript_29482.known	chr19	-	680	5	FSM	ENSMUSG00000025204.11	ENSMUST00000026222.11	680	5	0	0	0	0	multi-exon	FALSE	canonical	3	4404	junction_1	502.944517317765	2975	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCTCTTTCTCCAGG	1974	False	NA	-7	True	AATAAA	-29	NA	44543879	44538678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_44538852_44541136_44541293_44542107_44542208_44543369_44543497_44543755
transcript_29486.known	chr19	-	341	2	FSM	ENSMUSG00000025204.11	ENSMUST00000164543.2	341	2	0	0	0	0	multi-exon	FALSE	canonical	3	4404	junction_1	0	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGCTCTGGTTTCTGT	4534	False	NA	-22	True	AATAAA	-14	NA	44541319	44538693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_44538852_44541136
transcript_29487.known	chr19	+	6194	8	FSM	ENSMUSG00000036450.5	ENSMUST00000040455.5	6194	8	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_5	13.1583759310508	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTATGTGACTTATTTAAA	NA	False	NA	11	True	NA	NA	NA	44551288	44564713	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_44551494_44551728_44551980_44554316_44554466_44556773_44556920_44557842_44557950_44558331_44558396_44558665_44558777_44559552
transcript_29492.known	chr19	+	892	1	FSM	ENSMUSG00000036097.9	ENSMUST00000236356.2	892	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAACTTGGTACTGTCTTT	1055	False	NA	NA	False	AATAAA	-16	NA	44919601	44920493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_44919600_44920500
transcript_29493.known	chr19	+	3488	5	FSM	ENSMUSG00000025209.6	ENSMUST00000026227.3	3488	5	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	30.3593066455741	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTGCGTTTTTTCTTA	2553	False	NA	26	True	AATGAA	-19	NA	44994996	45001201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_44996815_44997718_44997960_44998570_44998679_44998856_44998999_45000022
transcript_29494.known	chr19	-	1398	3	FSM	ENSMUSG00000025208.10	ENSMUST00000097715.4	1398	3	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_1	27.5	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGACAGTGTAGGGTC	NA	False	NA	NA	False	NA	NA	NA	44994881	44993267	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_44994380_44994501_44994609_44994702
transcript_29497.known	chr19	-	515	2	FSM	ENSMUSG00000025208.10	ENSMUST00000235259.2	515	2	0	0	0	0	multi-exon	FALSE	canonical	3	515	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCGAGCATCCAGGGCCAG	NA	False	NA	NA	False	NA	NA	NA	44994859	44994250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_44994609_44994702
transcript_29499.known	chr19	+	2195	5	FSM	ENSMUSG00000025209.6	ENSMUST00000236685.2	2195	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	67.8122407829147	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTGCGTTTTTTCTTA	1658	False	NA	26	True	AATGAA	-19	NA	44994101	45001201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_44994627_44997718_44997960_44998570_44998679_44998856_44998999_45000022
transcript_2950.known	chr1	-	1097	6	FSM	ENSMUSG00000026688.6	ENSMUST00000028005.3	1097	6	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_1	22.7912263820971	219	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCTTTCTTAAGCAATAG	4956	False	NA	NA	False	AATAAA	-16	NA	167221410	167199534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_167200212_167201361_167201435_167203020_167203079_167204829_167204904_167205860_167205985_167221319
transcript_29500.known	chr19	+	2798	5	FSM	ENSMUSG00000035342.15	ENSMUST00000179108.9	2798	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	54.407605166925	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATCCATCTCTGCTTGCT	1587	False	NA	NA	False	GATAAA	-23	NA	45003638	45015550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_45003753_45009825_45010276_45011980_45012644_45013157_45013419_45014240
transcript_29501.known	chr19	+	2694	5	FSM	ENSMUSG00000035342.15	ENSMUST00000178087.3	2694	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	34.0954542424646	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTTTGACATCCATCT	5	True	NA	NA	False	GATAAA	-14	NA	45006650	45015541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_45006670_45009825_45010276_45011980_45012644_45013157_45013419_45014240
transcript_29503.known	chr19	+	2867	11	FSM	ENSMUSG00000025212.18	ENSMUST00000062213.13	2867	11	0	0	0	0	multi-exon	TRUE	canonical	3	75	junction_2	13.7767920794356	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATCTTCAGTTATTCC	NA	False	NA	7	True	AATAAA	-18	NA	45036112	45044821	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_45036330_45037542_45037707_45038182_45038354_45038666_45038766_45039088_45039165_45039314_45039401_45040534_45040663_45040849_45040900_45042108_45042159_45042740_45042789_45043043
transcript_29508.nic	chr19	+	2362	16	NIC	ENSMUSG00000025217.16	novel	2978	15	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	3	157	junction_2	153.826684580046	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATCTCTCTTGCTTTGCC	NA	False	NA	17	True	TATAAA	-19	NA	45352127	45517732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_45352326_45394983_45395026_45411571_45411680_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
transcript_29512.known	chr19	+	2978	15	FSM	ENSMUSG00000025217.16	ENSMUST00000065601.13	2978	15	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_1	116.411041625118	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGCTCTGTGGCTCGAA	NA	False	NA	NA	False	NA	NA	NA	45352189	45518452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_45352326_45411571_45411680_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
transcript_29518.nnic	chr19	+	2254	15	NIC	ENSMUSG00000025217.16	novel	2978	15	NA	NA	-45	0	combination_of_known_splicesites	FALSE	canonical	3	79	junction_2	163.999393353781	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATCTCTCTTGCTTTGCC	NA	False	NA	17	True	TATAAA	-19	NA	45352127	45517732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_45352326_45394983_45395026_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
transcript_2952.nnic	chr1	-	2218	16	NNC	ENSMUSG00000026683.15	novel	2068	15	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_14	59.6642457609432	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTTATCCAGGATGTT	NA	False	NA	-9	True	AATAAA	-26	NA	169359025	169325879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_169326490_169332033_169332170_169333550_169333727_169334812_169334954_169337968_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169356304_169356381_169357215_169357338_169358890
transcript_29522.nnic	chr19	+	2243	14	NIC	ENSMUSG00000025217.16	novel	2978	15	NA	NA	-46	0	combination_of_known_splicesites	FALSE	canonical	3	92	junction_2	165.00869620261	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAATCTCTCTTGCTTTGCC	NA	False	NA	17	True	TATAAA	-19	NA	45352126	45517732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_45352326_45411571_45411680_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
transcript_29524.known	chr19	+	2064	14	FSM	ENSMUSG00000025217.16	ENSMUST00000111936.4	2064	14	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	132.758623339525	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGAATCTCTCTTGCTT	NA	False	NA	13	True	TATAAA	-15	NA	45352271	45517728	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_45352326_45444971_45445050_45459453_45459544_45491370_45491603_45496122_45496310_45501083_45501181_45501825_45501964_45502446_45502566_45504296_45504547_45505453_45505573_45507247_45507359_45507880_45507960_45515702_45515896_45517411
transcript_2953.known	chr1	-	2068	15	FSM	ENSMUSG00000026683.15	ENSMUST00000028000.13	2068	15	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_14	29.0531708199618	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACTGTTATCCAGGATGTT	NA	False	NA	-9	True	AATAAA	-26	NA	169358997	169325879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_169326490_169332033_169332170_169333550_169333727_169334812_169334954_169337968_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169356304_169356381_169358890
transcript_29534.known	chr19	-	2324	9	FSM	ENSMUSG00000025218.7	ENSMUST00000026239.7	2324	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	11.9973955507018	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCTGCTGTCTGTGAGCT	NA	False	NA	2	True	AATAAA	-19	NA	45548970	45540713	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_45541610_45541947_45542117_45543529_45543659_45544360_45544535_45546153_45546472_45546694_45546855_45547063_45547359_45548018_45548156_45548924
transcript_2954.known	chr1	-	2405	14	FSM	ENSMUSG00000026683.15	ENSMUST00000111368.8	2405	14	0	0	0	0	multi-exon	TRUE	canonical	3	65	junction_13	32.5556419455247	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTTGGGCAAATGGAT	NA	False	NA	NA	False	NA	NA	NA	169359033	169325502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_169326490_169332033_169332170_169333550_169333727_169334812_169334954_169337968_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169358890
transcript_29540.known	chr19	+	687	7	FSM	ENSMUSG00000041035.10	ENSMUST00000235805.2	687	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	211.143447815829	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGCAGTGCTGGGGACTGT	3712	False	NA	NA	False	NA	NA	NA	45549073	45565982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_45549147_45549425_45549524_45553349_45553431_45560323_45560449_45560843_45560978_45565431_45565535_45565909
transcript_29541.nnic	chr19	+	849	6	NNC	ENSMUSG00000041035.10	novel	1353	6	NA	NA	-40	211	at_least_one_novel_splicesite	FALSE	canonical	3	68	junction_3	159.454570332744	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGACTGACTGCCCCTTT	3652	False	NA	13	True	AGTAAA	-20	NA	45549013	45566193	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_45549147_45553349_45553431_45560323_45560438_45560843_45560978_45565431_45565535_45565909
transcript_29542.known	chr19	+	1353	6	FSM	ENSMUSG00000041035.10	ENSMUST00000047057.9	1353	6	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_3	22.5601418435257	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAATGGTAGCATGTTTCC	3692	False	NA	NA	False	ATTAAA	-19	NA	45549053	45566726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_45549147_45553349_45553431_45560323_45560449_45560843_45560978_45565431_45565535_45565909
transcript_29544.known	chr19	-	5057	16	FSM	ENSMUSG00000025220.9	ENSMUST00000026243.5	5057	16	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_7	84.8678973464054	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGCTGTGCTGCTTTTT	5476	False	NA	-12	True	AATAAA	-13	NA	45771990	45738697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_45740720_45743045_45743206_45746343_45746537_45746787_45746874_45749542_45749648_45750623_45750710_45753888_45754064_45755832_45756447_45758489_45758649_45760120_45760406_45762100_45762200_45764486_45764659_45765325_45765457_45767025_45767124_45767470_45767523_45771370
transcript_29548.known	chr19	-	888	6	FSM	ENSMUSG00000056209.8	ENSMUST00000070215.8	888	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_3	39.9229257444892	788	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTGTGTGGCTTTTTCAA	4887	False	NA	0	True	AATAAA	-27	NA	45738030	45736172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_45736491_45736602_45736720_45736984_45737079_45737188_45737309_45737495_45737582_45737877
transcript_2955.known	chr1	-	1271	11	FSM	ENSMUSG00000026683.15	ENSMUST00000192248.2	1271	11	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_10	33.1324614238061	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAAAGTGTGGGTTTTT	NA	False	NA	-3	True	AATACA	-15	NA	169358980	169337685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169356304_169356381_169358890
transcript_29550.known	chr19	-	1005	8	FSM	ENSMUSG00000025221.17	ENSMUST00000086993.11	1005	8	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_7	6.66394502268034	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAGAGACCACACTAGACG	NA	False	NA	NA	False	NA	NA	NA	45800730	45781787	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_45782157_45782439_45782503_45782637_45782743_45782918_45783027_45783178_45783250_45783416_45783487_45784018_45784144_45800636
transcript_29553.known	chr19	-	3676	26	FSM	ENSMUSG00000039901.11	ENSMUST00000045396.9	3676	26	0	0	0	0	multi-exon	TRUE	canonical	3	159	junction_20	17.3221707646588	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTGTCTCGTTAGTGTC	6647	False	NA	-3	True	ATTAAA	-17	NA	45986927	45805802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_45807418_45808712_45808830_45834546_45834626_45874390_45874467_45879646_45879774_45880504_45880588_45910055_45910145_45920789_45920851_45922224_45922295_45924800_45924867_45928883_45928943_45934440_45934543_45939100_45939195_45941063_45941140_45941862_45941910_45945118_45945180_45946845_45946890_45948751_45948809_45953602_45953690_45953800_45953876_45954680_45954774_45961261_45961370_45963405_45963553_45963657_45963715_45967038_45967152_45986854
transcript_29559.known	chr19	-	1942	21	FSM	ENSMUSG00000039901.11	ENSMUST00000235131.2	1942	21	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	43.8	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGCTTGCCTGTGTAT	6647	False	NA	NA	False	AATAAA	-10	NA	45986927	45906882	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_45907246_45910055_45910145_45920789_45920851_45922224_45922295_45924800_45924867_45928883_45928943_45934440_45934543_45939100_45939195_45941063_45941140_45941862_45941910_45945118_45945180_45946845_45946890_45948751_45948809_45953602_45953690_45953800_45953876_45954680_45954774_45961261_45961370_45963405_45963553_45963657_45963715_45967038_45967152_45986854
transcript_2956.nic	chr1	-	1306	10	ISM	ENSMUSG00000026683.15	ENSMUST00000111368.8	2405	14	-58	12183	-58	0	5prime_fragment	FALSE	canonical	3	65	junction_9	38.1284379142101	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAAAGTGTGGGTTTTT	NA	False	NA	-3	True	AATACA	-15	NA	169359091	169337685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_169338107_169339735_169339799_169341013_169341111_169342480_169342555_169344129_169344228_169349939_169350002_169350423_169350501_169351472_169351548_169352880_169353019_169358890
transcript_29562.nic	chr19	-	2056	20	ISM	ENSMUSG00000039901.11	ENSMUST00000235131.2	1942	21	-133	2829	-133	0	5prime_fragment	FALSE	canonical	3	159	junction_14	18.7022151946125	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAGGAAAAAGAAAA	6514	False	NA	NA	False	NA	NA	NA	45987060	45909711	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_-_45910145_45920789_45920851_45922224_45922295_45924800_45924867_45928883_45928943_45934440_45934543_45939100_45939195_45941063_45941140_45941862_45941910_45945118_45945180_45946845_45946890_45948751_45948809_45953602_45953690_45953800_45953876_45954680_45954774_45961261_45961370_45963405_45963553_45963657_45963715_45967038_45967152_45986854
transcript_29564.known	chr19	+	2666	1	FSM	ENSMUSG00000074811.4	ENSMUST00000099393.4	2666	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGCGTGTTAAGTTTTG	NA	False	NA	25	True	AATATA	-14	NA	45991946	45994612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_45991900_45994600
transcript_29565.known	chr19	+	5246	14	FSM	ENSMUSG00000055491.15	ENSMUST00000111899.8	5246	14	0	0	0	0	multi-exon	TRUE	canonical	3	236	junction_7	80.0611452719015	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCAGCGTGTCCTTTCTG	NA	False	NA	5	True	AATAAA	-17	NA	46044977	46061350	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46045183_46049841_46050016_46050582_46050730_46050840_46050943_46051050_46053920_46054102_46054157_46055667_46055726_46056459_46056528_46057477_46058208_46059715_46059851_46059957_46060025_46060140_46060263_46060621_46060774_46060987
transcript_29566.known	chr19	-	2295	11	FSM	ENSMUSG00000025223.16	ENSMUST00000056931.14	2295	11	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_10	244.379806858095	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCACTCATGTTCCCCTAT	8088	False	NA	-31	True	ATTAAA	-20	NA	46028060	46021032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_46021781_46022470_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46027493
transcript_29567.known	chr19	-	1718	11	FSM	ENSMUSG00000025223.16	ENSMUST00000026252.14	1718	11	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_1	132.738992010637	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAGGGTAAAATTCTGGGC	7018	False	NA	-126	True	GGGGCT	-35	NA	46033353	46021127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_46021781_46022470_46022620_46022827_46022952_46023049_46023134_46023262_46023386_46023859_46024033_46024173_46024277_46024362_46024439_46024545_46024591_46024701_46024805_46033268
transcript_2957.known	chr1	+	723	4	FSM	ENSMUSG00000026678.11	ENSMUST00000152809.3	723	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGTCCAACTTATTTCTT	NA	False	NA	NA	False	AATAAA	-45	NA	169483090	169511515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_169483191_169504395_169504507_169510323_169510386_169511065
transcript_29572.known	chr19	+	2398	13	FSM	ENSMUSG00000015176.12	ENSMUST00000223683.2	2398	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	313.587042674491	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGTTGTGATTTTCAG	47	False	NA	14	True	ATTAAA	-14	NA	46064470	46072900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46064589_46067141_46067198_46067311_46067461_46067569_46067698_46068346_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
transcript_29576.known	chr19	+	3523	13	FSM	ENSMUSG00000015176.12	ENSMUST00000223728.2	3523	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	265.145819419344	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTCAGAGTTATGTCGT	244	False	NA	13	True	AATAAA	-16	NA	46064408	46073969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178_46071803_46071958_46072066_46072189_46072283_46072450
transcript_29582.nic	chr19	+	1800	10	ISM	ENSMUSG00000015176.12	ENSMUST00000223728.2	3523	13	-30	2201	-1	-14	5prime_fragment	FALSE	canonical	3	421	junction_4	162.914277239274	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGAAGAAAAAGGCAGC	214	False	NA	47	True	NA	NA	NA	46064378	46071768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068349_46068525_46069742_46069862_46069979_46070116_46070686_46070816_46070954_46071066_46071178
transcript_29584.nnic	chr19	+	613	5	NNC	ENSMUSG00000015176.12	novel	1854	9	NA	NA	-8	-214	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	404.493124169002	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTCAGCTCTTGCTCATT	20	False	NA	NA	False	AATAAA	-29	NA	46064443	46068170	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_46064589_46067141_46067198_46067314_46067461_46067569_46067698_46068032
transcript_29585.known	chr19	+	2979	23	FSM	ENSMUSG00000025225.16	ENSMUST00000073116.13	2979	23	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_13	7.7085334275273	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGCAACCCCAATGTGCTG	NA	False	NA	23	True	AATAAA	-28	NA	46293182	46300461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46293260_46294368_46294464_46294721_46294804_46294924_46294966_46295209_46295309_46295380_46295533_46295802_46295910_46295998_46296158_46296394_46296500_46296611_46296698_46296783_46296923_46297067_46297194_46297303_46297514_46297593_46297736_46298093_46298209_46298281_46298496_46298646_46298817_46298935_46299039_46299162_46299315_46299447_46299518_46299720_46299894_46300019_46300132_46300211
transcript_29586.known	chr19	+	3141	22	FSM	ENSMUSG00000025225.16	ENSMUST00000111881.4	3141	22	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_12	7.7415743094745	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCAATGTGCTGCCCAT	NA	False	NA	28	True	AATAAA	-33	NA	46294134	46300466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46294464_46294721_46294804_46294924_46294966_46295209_46295309_46295380_46295533_46295802_46295910_46295998_46296158_46296394_46296500_46296611_46296698_46296783_46296923_46297067_46297194_46297303_46297514_46297593_46297736_46298093_46298209_46298281_46298496_46298646_46298817_46298935_46299039_46299162_46299315_46299447_46299518_46299720_46299894_46300019_46300132_46300211
transcript_29587.known	chr19	-	1764	2	FSM	ENSMUSG00000118087.2	ENSMUST00000235942.2	1764	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTGAAAATGACATTTCG	NA	False	NA	NA	False	AATAAA	-17	NA	46294050	46292029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_46293290_46293546
transcript_2960.known	chr1	+	1731	4	FSM	ENSMUSG00000070532.6	ENSMUST00000094348.4	1731	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTCTGGTCTCCTTTTG	NA	False	NA	NA	False	GATAAA	-14	NA	169756216	169762222	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_169756573_169757487_169757730_169760563_169760685_169761210
transcript_29601.nic	chr19	-	1162	10	NIC	ENSMUSG00000036748.17	novel	1164	10	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	122	junction_9	349.700542086801	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5806	False	NA	-6	True	AGTAAA	-15	NA	46327115	46318982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326851_46327007
transcript_29602.nnic	chr19	-	1219	10	NIC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	3	123	junction_9	349.486642921081	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5807	False	NA	-6	True	AGTAAA	-15	NA	46327114	46318982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46326958
transcript_29603.nic	chr19	-	1231	10	NIC	ENSMUSG00000036748.17	novel	1167	10	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	89	junction_9	356.842566524722	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5805	False	NA	-6	True	AGTAAA	-15	NA	46327116	46318982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326870_46326958
transcript_29609.known	chr19	-	1164	10	FSM	ENSMUSG00000036748.17	ENSMUST00000236061.2	1164	10	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_9	336.647010794011	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5858	False	NA	-6	True	AGTAAA	-15	NA	46327063	46318982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326851_46327007
transcript_29610.nnic	chr19	-	1273	10	NIC	ENSMUSG00000036748.17	novel	1941	10	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	3	123	junction_9	336.420298561116	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5807	False	NA	-6	True	AGTAAA	-15	NA	46327114	46318982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326860_46326958
transcript_29611.nic	chr19	-	1285	10	NIC	ENSMUSG00000036748.17	novel	1167	10	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	89	junction_9	344.205723727706	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5805	False	NA	-6	True	AGTAAA	-15	NA	46327116	46318982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326870_46326958
transcript_29612.known	chr19	-	1167	10	FSM	ENSMUSG00000036748.17	ENSMUST00000236046.2	1167	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	358.309542707226	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATATGCTCATTCTGCTC	5874	False	NA	-6	True	AGTAAA	-15	NA	46327047	46318982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321141_46326751_46326870_46327007
transcript_2962.known	chr1	-	1446	8	FSM	ENSMUSG00000026675.13	ENSMUST00000111353.4	1446	8	0	0	0	0	multi-exon	TRUE	canonical	3	56	junction_5	6.15115718331742	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATACTTCTCTGTGATCTT	NA	False	NA	NA	False	AATAAA	-24	NA	169796810	169783069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_169783603_169786991_169787049_169787255_169787361_169788573_169788769_169791959_169792075_169793255_169793349_169794798_169795003_169796666
transcript_29623.known	chr19	-	999	9	FSM	ENSMUSG00000036748.17	ENSMUST00000236980.2	999	9	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_8	339.490035752156	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTATATGCTCATTCTGC	-2	True	NA	-8	True	AGTAAA	-13	NA	46327056	46318984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320059_46320195_46320258_46320351_46320496_46321056_46321138_46327007
transcript_29624.known	chr19	-	1050	9	FSM	ENSMUSG00000036748.17	ENSMUST00000235977.2	1050	9	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_5	355.205486303351	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTCATTCTGCTCATTT	5844	False	NA	-2	True	AGTAAA	-19	NA	46327077	46318978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320080_46320195_46320258_46320351_46320496_46321056_46321141_46327007
transcript_29627.known	chr19	-	1790	9	FSM	ENSMUSG00000036748.17	ENSMUST00000235485.2	1790	9	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_8	321.93700859019	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTGGCTCCCAAGTCTG	5862	False	NA	NA	False	NA	NA	NA	46327059	46318250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_46319274_46319358_46319420_46319490_46319553_46319728_46319906_46319984_46320113_46320195_46320258_46320351_46320496_46321056_46321138_46327007
transcript_2964.known	chr1	-	2283	11	FSM	ENSMUSG00000026670.16	ENSMUST00000027981.8	2283	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_3	76.9519330491444	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCTTGTTTCTACCTTA	NA	False	NA	-5	True	AATAAA	-15	NA	170002515	169969571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_169970142_169970965_169971033_169975564_169975613_169976839_169977029_169977880_169978022_169978511_169978706_169984492_169984666_169986319_169986496_169988935_169989141_169994194_169994518_170002318
transcript_29647.known	chr19	+	1348	4	FSM	ENSMUSG00000025226.12	ENSMUST00000026256.9	1348	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	4.08248290463863	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCGTGGTGCATAGGGGAC	6313	False	NA	9	True	AATAAA	-18	NA	46316622	46318885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46316966_46317113_46317268_46317526_46318033_46318540
transcript_29649.known	chr19	+	1243	5	FSM	ENSMUSG00000025226.12	ENSMUST00000177667.2	1243	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.8004237212059	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCGTGGTGCATAGGGGA	6316	False	NA	8	True	AATAAA	-17	NA	46316625	46318884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46316741_46316841_46316966_46317113_46317268_46317526_46318033_46318540
transcript_2965.known	chr1	-	2311	10	FSM	ENSMUSG00000026670.16	ENSMUST00000111350.10	2311	10	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_2	66.4981202741852	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAATGCATAAAAACAAGTG	NA	False	NA	60	True	AATACA	-22	NA	170002526	169969506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_169970142_169970965_169971033_169976839_169977029_169977880_169978022_169978511_169978706_169984492_169984666_169986319_169986496_169988935_169989141_169994194_169994518_170002318
transcript_29650.nnic	chr19	+	2451	10	NNC	ENSMUSG00000025227.15	novel	2278	9	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	82.6896622735489	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTTGGGTCTGTGCCG	4216	False	NA	13	True	AGTAAA	-13	NA	46345336	46363691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_46345424_46350784_46350976_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884
transcript_29651.known	chr19	+	2278	9	FSM	ENSMUSG00000025227.15	ENSMUST00000086969.13	2278	9	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	30.2561977122044	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTTGGGTCTGTGCCG	4198	False	NA	13	True	AGTAAA	-13	NA	46345318	46363691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46345424_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360374_46360547_46360620_46360815_46362884
transcript_29653.nnic	chr19	+	2279	9	NNC	ENSMUSG00000025227.15	novel	2278	9	NA	NA	18	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_7	100.850136341008	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTTGGGTCTGTGCCG	4216	False	NA	13	True	AGTAAA	-13	NA	46345336	46363691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_46345424_46350784_46350976_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360620_46360815_46362884
transcript_29655.known	chr19	+	2051	8	FSM	ENSMUSG00000025227.15	ENSMUST00000142994.8	2051	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_6	80.873294701764	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCTTTGGGTCTGTGCCG	4253	False	NA	13	True	AGTAAA	-13	NA	46345373	46363691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46345424_46354749_46354993_46355648_46355732_46356147_46356601_46356704_46356829_46357675_46357773_46360620_46360815_46362884
transcript_29656.known	chr19	-	2757	11	FSM	ENSMUSG00000025228.6	ENSMUST00000040270.6	2757	11	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_3	19.222122671547	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGACCTCTTTCTGT	NA	False	NA	-2	True	AATAAA	-19	NA	46384186	46365249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_46366909_46367046_46367088_46367851_46367914_46368020_46368196_46368687_46368781_46369355_46369573_46370732_46370858_46372658_46372785_46373451_46373528_46375890_46375956_46384068
transcript_29659.known	chr19	+	1747	12	FSM	ENSMUSG00000025231.18	ENSMUST00000111867.9	1747	12	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	20.0218888484042	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGATGACTGCAGAGTGCCA	NA	False	NA	NA	False	AATAAA	-13	NA	46385356	46474487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441597_46441755_46443173_46443286_46462010_46462146_46463946_46464086_46472038_46472108_46474293
transcript_2966.known	chr1	-	7246	16	FSM	ENSMUSG00000026663.7	ENSMUST00000027974.7	7246	16	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_10	11.1705963234835	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGTCTGTACAAAGACA	NA	False	NA	2	True	AATAAA	-18	NA	170695340	170532242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_170537657_170574674_170574760_170614914_170615030_170616176_170616245_170621525_170621626_170622225_170622340_170627182_170627315_170642991_170643084_170646815_170647002_170662388_170662610_170668249_170668454_170669254_170669382_170676685_170676787_170680473_170680562_170682681_170682759_170695218
transcript_29660.known	chr19	+	4522	12	FSM	ENSMUSG00000025231.18	ENSMUST00000039922.13	4522	12	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_6	14.4473967456865	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTGTGTGCTTCTTTCT	NA	False	NA	19	True	ATTAAA	-19	NA	46385334	46477243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46385724_46389562_46389698_46413437_46413575_46438267_46438411_46439017_46439104_46439329_46439403_46441600_46441755_46443173_46443286_46462010_46462146_46463946_46464086_46472038_46472108_46474293
transcript_29663.known	chr19	+	3580	6	FSM	ENSMUSG00000025034.10	ENSMUST00000026008.9	3580	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	429.31275312993	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTGGCCCAATGGGACAC	NA	False	NA	NA	False	AATAAA	-21	NA	46490140	46505287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46491453_46501161_46501258_46501546_46501781_46502891_46502924_46503060_46503177_46503497
transcript_29666.known	chr19	-	843	6	FSM	ENSMUSG00000025035.10	ENSMUST00000026009.10	843	6	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	35.3870032639103	285	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATTAAATGTCTCAGAGCA	NA	False	NA	-21	True	AATAAA	-35	NA	46561532	46519534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_46519826_46530790_46530977_46531920_46531972_46540011_46540129_46546676_46546821_46561478
transcript_29670.known	chr19	+	3205	12	FSM	ENSMUSG00000025036.8	ENSMUST00000026011.8	3205	12	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_10	6.85384611817119	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAACACTGTCTGCAAAC	NA	False	NA	15	True	AATAAA	-15	NA	46561805	46585334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738_46580787_46583110
transcript_29671.nic	chr19	+	1394	11	ISM	ENSMUSG00000025036.8	ENSMUST00000026011.8	3205	12	-68	4203	-66	2142	5prime_fragment	FALSE	canonical	3	36	junction_10	6.8622153857191	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCTCATGCTCTGGTC	NA	False	NA	NA	False	TTTAAA	-27	NA	46561737	46581131	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_46561899_46570922_46571103_46571245_46571417_46574143_46574243_46576373_46576450_46576662_46576749_46578579_46578641_46578922_46578990_46579559_46579610_46579931_46579982_46580738
transcript_29674.known	chr19	+	3911	5	FSM	ENSMUSG00000047731.18	ENSMUST00000099376.11	3911	5	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	18.7666592658363	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACAATCTCCTGCCGCTC	NA	False	NA	17	True	AATAAA	-18	NA	46587552	46645821	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46587733_46595150_46595199_46632791_46632895_46640912_46641075_46642403
transcript_29676.known	chr19	+	3900	4	FSM	ENSMUSG00000047731.18	ENSMUST00000138302.9	3900	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	42.0898509804389	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTGCCGCTCCTTGTTC	NA	False	NA	24	True	AATAAA	-25	NA	46587522	46645828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46587733_46632791_46632895_46640912_46641075_46642403
transcript_29682.known	chr19	+	2176	5	FSM	ENSMUSG00000062376.8	ENSMUST00000074912.8	2176	5	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	5.33853912601566	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTTAGACCAATCATTT	9071	False	NA	NA	False	AATAAA	-18	NA	46678344	46691821	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46678525_46687994_46688058_46688176_46688221_46689213_46689235_46689953
transcript_29686.known	chr19	+	1736	11	FSM	ENSMUSG00000003559.9	ENSMUST00000003655.9	1736	11	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_6	16.3612346722367	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGGATGTCTGTAGTTT	5974	False	NA	30	True	AATAAA	-40	NA	46695896	46729534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46695976_46696194_46696239_46696508_46696637_46697406_46697558_46697985_46698123_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
transcript_29687.known	chr19	+	1719	9	FSM	ENSMUSG00000003559.9	ENSMUST00000237219.2	1719	9	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_4	13.865424623862	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTCTGTAGTTTGTCT	6484	False	NA	34	True	AATAAA	-44	NA	46696406	46729538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46696637_46697406_46697558_46697985_46698123_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
transcript_29688.known	chr19	+	1659	10	FSM	ENSMUSG00000003559.9	ENSMUST00000236063.2	1659	10	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	56.2713882519569	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAACAAATAAAAA	6191	False	NA	-27	True	NA	NA	NA	46696113	46729477	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46696239_46696508_46696637_46697406_46697558_46697985_46698101_46700659_46700730_46703627_46703710_46708327_46708460_46708752_46708896_46713342_46713478_46728899
transcript_29696.known	chr19	+	4955	8	FSM	ENSMUSG00000064105.14	ENSMUST00000099373.12	4955	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	39.1240830889495	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAGATGAAGGACTTGAG	NA	False	NA	NA	False	NA	NA	NA	46750034	46868631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_46751833_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46860094_46860161_46865646_46865832_46866271
transcript_29698.nnic	chr19	+	1397	8	NNC	ENSMUSG00000064105.14	novel	4955	8	NA	NA	-46175	-68	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	43.6507474747231	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTATCGTTTCTTTCAT	NA	False	NA	16	True	AATAGA	-22	NA	46807923	46866733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_46808062_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46860094_46860161_46865646_46865832_46866271
transcript_29699.nnic	chr19	+	1465	8	NNC	ENSMUSG00000064105.14	novel	4955	8	NA	NA	-46175	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	43.6507474747231	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGATCATGTTTTTGTTT	NA	False	NA	29	True	TTTAAA	-25	NA	46807923	46866801	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_46808062_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46860094_46860161_46865646_46865832_46866271
transcript_29704.nnic	chr19	+	1616	7	NNC	ENSMUSG00000064105.14	novel	4955	8	NA	NA	-46175	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	48.9605850546017	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACGTGCCAAGTCTGTCG	NA	False	NA	13	True	AAGAAA	-15	NA	46807923	46867018	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_46808062_46842339_46842484_46845274_46845413_46847381_46847552_46856976_46857071_46865646_46865832_46866271
transcript_29705.known	chr19	-	2788	19	FSM	ENSMUSG00000025041.18	ENSMUST00000235596.2	2788	19	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_16	45.187572037748	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTGGCCCTTGTGTAGT	7192	False	NA	NA	False	AGTAAA	-17	NA	46950747	46876266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46897928_46897988_46912700_46912775_46939284_46939405_46950710
transcript_29708.known	chr19	-	3728	18	FSM	ENSMUSG00000025041.18	ENSMUST00000168536.9	3728	18	0	0	0	0	multi-exon	TRUE	canonical	3	118	junction_5	15.8666589126981	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCTAAGTCTGAATAATTT	7192	False	NA	NA	False	AGTAAA	-14	NA	46950747	46875267	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46939284_46939405_46950710
transcript_29712.nnic	chr19	-	1914	17	NNC	ENSMUSG00000025041.18	novel	2920	17	NA	NA	2700	346	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	37.5860990759882	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTTCAGTTTTGTGTAT	NA	False	NA	-25	True	TTTAAA	-15	NA	46914964	46877100	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_46877491_46878208_46878386_46878507_46878569_46878684_46878737_46879947_46880119_46880673_46880741_46880943_46881052_46881957_46882000_46882959_46883044_46884946_46885001_46886014_46886109_46887060_46887119_46887241_46887334_46892316_46892413_46893413_46893532_46912700_46912775_46914788
transcript_29716.known	chr19	-	2159	10	FSM	ENSMUSG00000025050.9	ENSMUST00000026032.7	2159	10	0	0	0	0	multi-exon	FALSE	canonical	3	486	junction_3	49.2396507895471	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGAGGTGTGTTGACATA	NA	False	NA	-19	True	AATAAA	-17	NA	47039343	47022055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_47023125_47025676_47025764_47028482_47028582_47031204_47031233_47034248_47034358_47036385_47036446_47036546_47036603_47037238_47037336_47037428_47037529_47038889
transcript_2972.known	chr1	-	1374	6	FSM	ENSMUSG00000026659.14	ENSMUST00000027970.14	1374	6	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_3	62.7917191992702	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTGTGTTAGATGGTTT	NA	False	NA	-2	True	ATTAAA	-16	NA	170713109	170701756	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708598_170712635
transcript_29721.known	chr19	-	425	5	FSM	ENSMUSG00000071528.5	ENSMUST00000237720.2	425	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2533.27548590752	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAATTATGAACCTGGAA	NA	False	NA	-22	True	NA	NA	NA	47079073	47071924	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_47072009_47073207_47073298_47074393_47074487_47074572_47074669_47079011
transcript_29723.known	chr19	-	362	4	FSM	ENSMUSG00000071528.5	ENSMUST00000096014.5	362	4	0	0	0	0	multi-exon	FALSE	canonical	3	3669	junction_3	1157.30270696804	3979	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGCTGGTTGTCTTTATT	NA	False	NA	-4	True	AATAAA	-13	NA	47079082	47071906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_47072009_47074393_47074487_47074572_47074669_47079011
transcript_29726.known	chr19	-	352	3	FSM	ENSMUSG00000071528.5	ENSMUST00000236170.2	352	3	0	0	0	0	multi-exon	FALSE	canonical	3	3669	junction_2	1312	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTCATTGTATACACGA	NA	False	NA	NA	False	AATAAA	-16	NA	47079086	47074305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_47074487_47074572_47074669_47079011
transcript_29727.known	chr19	+	3260	11	FSM	ENSMUSG00000025049.7	ENSMUST00000026027.7	3260	11	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_3	39.3161544406367	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTGTACAAATTGAGTA	NA	False	NA	15	True	AATAAA	-27	NA	47056184	47071918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_47056766_47059419_47059658_47063251_47063568_47064174_47064339_47064435_47064572_47065712_47065834_47067206_47067337_47068979_47069145_47070247_47070426_47070582_47070761_47070865
transcript_29729.nic	chr19	+	316	3	ISM	ENSMUSG00000025047.10	ENSMUST00000072141.4	6761	36	-31	38049	-31	-34665	5prime_fragment	FALSE	canonical	3	191	junction_2	3.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTGAAAATTGAAAAGAGAAA	NA	False	NA	NA	False	ATTAAA	-40	NA	47079175	47082255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_47079307_47081220_47081340_47082189
transcript_2973.known	chr1	-	911	6	FSM	ENSMUSG00000026659.14	ENSMUST00000166393.2	911	6	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	89.0002247188174	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACAGTGCTCCTGTGGTCG	NA	False	NA	NA	False	NA	NA	NA	170712965	170702088	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_170702140_170707228_170707416_170707698_170707796_170708141_170708261_170708483_170708611_170712635
transcript_29731.known	chr19	-	2458	3	FSM	ENSMUSG00000033033.11	ENSMUST00000035822.2	2458	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	1	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAACAAAACAA	5329	False	NA	NA	False	NA	NA	NA	47126733	47120261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_47121613_47123787_47124505_47126343
transcript_29732.nic	chr19	+	966	3	ISM	ENSMUSG00000006435.17	ENSMUST00000111807.5	3606	6	24458	1640	24458	-1640	3prime_fragment	FALSE	canonical	3	77	junction_1	18.5	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCCTGGAGGATTGGGCT	1471	False	NA	NA	False	ATTAAA	-14	NA	47241807	47246234	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_47242248_47245150_47245298_47245855
transcript_29733.nic	chr19	+	2488	3	ISM	ENSMUSG00000006435.17	ENSMUST00000111807.5	3606	6	24576	0	24576	0	3prime_fragment	FALSE	canonical	3	77	junction_1	18.5	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGAGGGCTGTGCTGTGC	1589	False	NA	34	True	AATAAA	-16	NA	47241925	47247874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_47242248_47245150_47245298_47245855
transcript_29734.known	chr19	-	1992	10	FSM	ENSMUSG00000042694.18	ENSMUST00000049369.16	1992	10	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_2	7.26907877057606	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCATTTCCTTATGACTT	NA	False	NA	-10	True	AATAAA	-27	NA	47525558	47489471	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_47490157_47496244_47496318_47498773_47498897_47502249_47502422_47504529_47504654_47505465_47505634_47513125_47513195_47517075_47517172_47524634_47524811_47525252
transcript_29737.known	chr19	-	558	5	FSM	ENSMUSG00000042694.18	ENSMUST00000182431.8	558	5	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_1	57.4429064376099	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGCAGGCCAGTCTCCACC	NA	False	NA	NA	False	NA	NA	NA	47525403	47510570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_47510637_47513125_47513195_47517075_47517172_47524634_47524811_47525252
transcript_29738.known	chr19	-	690	2	FSM	ENSMUSG00000042694.18	ENSMUST00000182714.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGCCTGGGCTACATAAGA	NA	False	NA	NA	False	NA	NA	NA	47525485	47524353	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_47524811_47525252
transcript_2974.known	chr1	-	846	5	FSM	ENSMUSG00000026659.14	ENSMUST00000171447.8	846	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	122.748727080976	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTGTGTTAGATGGTTT	NA	False	NA	-2	True	ATTAAA	-16	NA	170712768	170701756	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_170702140_170707698_170707796_170708141_170708261_170708483_170708598_170712635
transcript_29752.nnic	chr19	+	1535	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	-34	-59	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	786.61442270022	714	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTCCAATTTGTTTTC	NA	False	NA	9	True	ATTAAA	-15	NA	47720086	47723968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_47720261_47721068_47721144_47721240_47721428_47721957_47722351_47723262
transcript_29764.nnic	chr19	+	1525	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	24	-59	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	786.61442270022	520	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTCCAATTTGTTTTC	NA	False	NA	9	True	ATTAAA	-15	NA	47720144	47723968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_47720261_47721068_47721192_47721240_47721428_47721957_47722351_47723262
transcript_29765.nnic	chr19	+	1453	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	48	-59	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	786.61442270022	72	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTCCAATTTGTTTTC	NA	False	NA	9	True	ATTAAA	-15	NA	47720168	47723968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_47720261_47721068_47721192_47721288_47721428_47721957_47722351_47723262
transcript_29785.nnic	chr19	+	1486	5	NNC	ENSMUSG00000025066.11	novel	1657	4	NA	NA	63	-59	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	786.61442270022	93	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTCCAATTTGTTTTC	NA	False	NA	9	True	ATTAAA	-15	NA	47720183	47723968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_47720261_47721068_47721336_47721384_47721428_47721957_47722351_47723262
transcript_29788.known	chr19	+	1182	6	FSM	ENSMUSG00000025068.9	ENSMUST00000026050.8	1182	6	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_4	32.103582354622	316	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGTCCAAACCACCTCAG	8468	False	NA	21	True	ATTAAA	-30	NA	47843408	47853229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_47843562_47843653_47843763_47846297_47846521_47847870_47847970_47851817_47851922_47852735
transcript_2979.known	chr1	-	336	1	FSM	ENSMUSG00000089838.2	ENSMUST00000159266.2	336	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTAGTTAAGATCTGTG	8626	False	NA	NA	False	AAGAAA	-29	NA	170753213	170752877	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_170752900_170753200
transcript_29790.known	chr19	+	1351	9	FSM	ENSMUSG00000025069.16	ENSMUST00000056159.11	1351	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	0.992156741649222	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACTCCTGAAGCCTGTA	96	False	NA	NA	False	AATAAA	-36	NA	47854205	47874763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_47854369_47858124_47858200_47858647_47858763_47860092_47860243_47860454_47860564_47863268_47863492_47864834_47864937_47873094_47873202_47874456
transcript_29792.known	chr19	-	4078	21	FSM	ENSMUSG00000025027.19	ENSMUST00000183108.8	4078	21	0	0	0	0	multi-exon	FALSE	canonical	3	790	junction_19	199.189727395767	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	9945	False	NA	-3	True	AATAAA	-14	NA	53028645	52979613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53020439_53020529_53026944
transcript_29793.nic	chr19	-	2598	20	NIC	ENSMUSG00000025027.19	novel	4078	21	NA	NA	-182	0	combination_of_known_junctions	FALSE	canonical	3	690	junction_19	186.942819408855	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGCTTTGTCTGCCTC	4877	False	NA	-3	True	AATAAA	-14	NA	53027254	52979613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_52980151_52983851_52983951_52984679_52984757_52985330_52985505_52986304_52986375_52987582_52987644_52988819_52988892_52990904_52990983_52991109_52991169_52992194_52992246_52993194_52993285_52994585_52994797_52996301_52996384_52998498_52998595_53000196_53000341_53000619_53000713_53001829_53001935_53003041_53003106_53013689_53013815_53026944
transcript_29805.known	chr19	+	4054	15	FSM	ENSMUSG00000025026.16	ENSMUST00000237430.2	4054	15	0	0	0	0	multi-exon	TRUE	canonical	3	178	junction_5	22.1124214791929	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTTGGTATAATGGGGT	151	False	NA	8	True	AATAAA	-17	NA	53131404	53235518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_53131521_53205231_53205447_53215021_53215161_53219610_53219763_53220554_53220636_53221456_53221607_53222003_53222148_53222255_53222355_53223209_53223393_53225024_53225283_53226833_53226954_53227837_53227925_53230934_53231059_53232740_53232837_53233428
transcript_29808.known	chr19	+	2340	6	FSM	ENSMUSG00000025025.15	ENSMUST00000111737.3	2340	6	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	29.7859027058103	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGCTTTATGAT	4414	False	NA	NA	False	TTTAAA	-25	NA	53317843	53361585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_53318152_53319781_53319915_53334881_53334912_53357972_53358088_53358620_53358793_53360003
transcript_29809.nic	chr19	-	2275	7	NIC	ENSMUSG00000025024.8	novel	1948	6	NA	NA	-143	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_5	104.802459682755	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCAGTGTGTTAACAAAG	NA	False	NA	-8	True	AATAAA	-17	NA	53379152	53367826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_53369033_53369671_53369826_53371987_53372150_53372884_53373028_53374803_53374988_53377733_53377854_53378846
transcript_29815.known	chr19	-	1948	6	FSM	ENSMUSG00000025024.8	ENSMUST00000025997.7	1948	6	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_4	26.9102211064867	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCAGTGTGTTAACAAAG	NA	False	NA	-8	True	AATAAA	-17	NA	53379009	53367826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_53369033_53369671_53369826_53371987_53372150_53372884_53373028_53377733_53377854_53378846
transcript_29816.known	chr19	-	1478	6	FSM	ENSMUSG00000025024.8	ENSMUST00000236962.2	1478	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	83.1903840596977	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTAGGATGTGCGCCCCT	NA	False	NA	-8	True	ATTAAA	-16	NA	53379005	53368309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_53369033_53369671_53369826_53371987_53372167_53372884_53373028_53377733_53377854_53378846
transcript_29819.nic	chr19	-	625	4	ISM	ENSMUSG00000025024.8	ENSMUST00000025997.7	1948	6	-37	4161	-37	910	5prime_fragment	FALSE	canonical	3	184	junction_2	11.8133634311129	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGACGCTTCCCAGAC	NA	False	NA	2	True	NA	NA	NA	53379046	53371987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_-_53372150_53372884_53373028_53377733_53377854_53378846
transcript_2982.nic	chr1	-	1673	5	ISM	ENSMUSG00000026656.16	ENSMUST00000081103.12	1462	7	7434	0	-7063	0	3prime_fragment	FALSE	canonical	3	38	junction_2	18.6346451535842	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTTCTATTTACTTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	170796262	170788126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_170788670_170788764_170788803_170793270_170793394_170794014_170794270_170795548
transcript_29821.nic	chr19	-	881	3	ISM	ENSMUSG00000025024.8	ENSMUST00000236962.2	1478	6	-35	4151	-31	437	5prime_fragment	FALSE	canonical	3	184	junction_1	12	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGTGAATTGCTGACA	NA	False	NA	NA	False	NA	NA	NA	53379040	53372460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_-_53373028_53377733_53377854_53378846
transcript_29822.known	chr19	-	901	1	FSM	ENSMUSG00000071497.5	ENSMUST00000095978.5	901	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	540	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53577499	53576598	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_53576600_53577500
transcript_29823.known	chr19	+	4851	29	FSM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	0	0	0	0	multi-exon	FALSE	non_canonical	3	891	junction_13	92.0610586535271	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGTGTGTAATTCATCA	NA	False	NA	NA	False	CATAAA	-14	NA	53588828	53634264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379_53613594_53616281_53616386_53616483_53616584_53617097_53617259_53617674_53617817_53619917_53620069_53622389_53622543_53624101_53624254_53624811_53624971_53627128_53627237_53627757_53627867_53629192_53629441_53629528_53629742_53629955_53630148_53630291_53630470_53632274_53632382_53633137
transcript_29828.nic	chr19	+	1523	14	ISM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	-2	17909	-2	-8571	5prime_fragment	FALSE	canonical	3	891	junction_13	80.6219903341749	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAGAAAGATGAACTACAAA	NA	False	NA	NA	False	AGTAAA	-4	NA	53588826	53616355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379_53613594_53616281
transcript_29829.nic	chr19	+	1557	13	ISM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	-251	20812	-251	-11474	5prime_fragment	FALSE	canonical	3	969	junction_6	66.6481224208321	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAAGGGATAAATGGAT	NA	False	NA	NA	False	NA	NA	NA	53588577	53613452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379
transcript_29830.nic	chr19	+	1421	13	ISM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	-2	20699	-2	-11361	5prime_fragment	FALSE	canonical	3	969	junction_6	66.6481224208321	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGAGAAAAATCTGGAGC	NA	False	NA	NA	False	NA	NA	NA	53588826	53613565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897_53612020_53613379
transcript_29831.nic	chr19	+	1126	12	ISM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	25	22327	25	-12989	5prime_fragment	FALSE	canonical	3	969	junction_6	67.9389614237577	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAGAAGAAAAGCAGAAAGAA	NA	False	NA	NA	False	ATTAAA	-27	NA	53588853	53611937	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897
transcript_29832.nic	chr19	+	1213	12	ISM	ENSMUSG00000024974.11	ENSMUST00000025930.10	4851	29	0	22265	0	-12927	5prime_fragment	FALSE	canonical	3	969	junction_6	67.9389614237577	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAGCGAGGAATTGCGAG	NA	False	NA	NA	False	AAGAAA	-3	NA	53588828	53611999	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_53588986_53589913_53589990_53602245_53602285_53603536_53603605_53606499_53606572_53606897_53606978_53607201_53607281_53609019_53609138_53610161_53610338_53611034_53611116_53611482_53611648_53611897
transcript_29834.known	chr19	+	2381	12	FSM	ENSMUSG00000024975.14	ENSMUST00000025931.14	2381	12	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_5	6.73954654285478	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGGAGTGCATTTATTGTG	468	False	NA	22	True	AATAAA	-27	NA	53891729	53918291	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_53891920_53895879_53895987_53897542_53897846_53899358_53899454_53901242_53901357_53908045_53908268_53909648_53909747_53910447_53910563_53914636_53914745_53914965_53915077_53915624_53915765_53917513
transcript_29835.known	chr19	+	1733	13	FSM	ENSMUSG00000024975.14	ENSMUST00000165617.3	1733	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_12	33.2949779329489	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTAGTGGGAGTGCATT	585	False	NA	15	True	AATAAA	-20	NA	53891846	53918284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_53891920_53895879_53895987_53897542_53897846_53899358_53899454_53901242_53901357_53908045_53908268_53909648_53909747_53910447_53910563_53914636_53914745_53914965_53915077_53915624_53915765_53917513_53917624_53918147
transcript_29838.known	chr19	+	3664	9	FSM	ENSMUSG00000024976.15	ENSMUST00000169861.9	3664	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	127.929668177479	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTTGGATTTTTGCTTTTC	3358	False	NA	NA	False	ATTAAA	-20	NA	53932736	54021298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_53932834_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
transcript_29840.nnic	chr19	+	2222	9	NNC	ENSMUSG00000024976.15	novel	3965	9	NA	NA	-48	-1416	at_least_one_novel_splicesite	FALSE	canonical	3	220	junction_1	61.2775448267961	69	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTATATAAGTTTTCTTT	3877	False	NA	NA	False	AATAGA	-45	NA	53933255	54019882	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_53933327_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
transcript_29841.nnic	chr19	+	3902	9	NNC	ENSMUSG00000024976.15	novel	3965	9	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	canonical	3	220	junction_1	61.2775448267961	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCTTGTGTGTGTGGTGT	3877	False	NA	21	True	TATAAA	-24	NA	53933255	54021562	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_53933327_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
transcript_29842.known	chr19	+	3965	9	FSM	ENSMUSG00000024976.15	ENSMUST00000025932.9	3965	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	123.021784148174	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCTTGTGTGTGTGGTGT	3932	False	NA	21	True	TATAAA	-24	NA	53933310	54021562	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_53933445_53975884_53976815_53991439_53991578_54005979_54006111_54014780_54014970_54016148_54016272_54017899_54018038_54018291_54018410_54019498
transcript_29846.known	chr19	-	838	5	FSM	ENSMUSG00000084957.4	ENSMUST00000236885.2	838	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	83.9315197050548	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGCTGACTGCTACGGA	NA	False	NA	NA	False	AATACA	-21	NA	53932611	53919390	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_53919934_53920560_53920637_53921921_53922002_53931896_53932011_53932586
transcript_29847.known	chr19	-	787	5	FSM	ENSMUSG00000084957.4	ENSMUST00000235348.2	787	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	83.3261663584735	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CATGAATCTGAAAATAAACT	NA	False	NA	NA	False	ATTAAA	-34	NA	53932905	53919474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_53919934_53920560_53920637_53921921_53922002_53931896_53932011_53932847
transcript_2985.known	chr1	-	1462	7	FSM	ENSMUSG00000026656.16	ENSMUST00000081103.12	1462	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_6	22.7943706500823	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATCTTTCTATTTACTTTT	NA	False	NA	NA	False	AGTAAA	-17	NA	170803696	170788126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_170788670_170788764_170788803_170793270_170793394_170794014_170794270_170795548_170795804_170797042_170797064_170803469
transcript_29851.known	chr19	-	662	4	FSM	ENSMUSG00000084957.4	ENSMUST00000236370.2	662	4	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_3	45.8427263102398	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTGTTATGAATGTAAGA	NA	False	NA	NA	False	TATAAA	-31	NA	53932659	53919534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_53919934_53920560_53920637_53931896_53932011_53932586
transcript_29852.known	chr19	-	2043	4	FSM	ENSMUSG00000084957.4	ENSMUST00000135402.4	2043	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	53.0806514236172	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGAATCAACAGTGTTTC	NA	False	NA	NA	False	AATAAA	-12	NA	53933058	53918291	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_53919934_53920560_53920637_53931896_53932011_53932847
transcript_29855.known	chr19	-	986	1	FSM	ENSMUSG00000084957.4	ENSMUST00000236900.2	986	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAAAAAAAAGAACAA	NA	False	NA	NA	False	NA	NA	NA	53932909	53931923	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_53931900_53932900
transcript_29856.known	chr19	+	4243	22	FSM	ENSMUSG00000024981.7	ENSMUST00000043150.6	4243	22	0	0	0	0	multi-exon	TRUE	canonical	3	56	junction_1	11.2473730871055	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACGTGACTTGTCTCATCTG	NA	False	NA	NA	False	AATATA	-16	NA	55241800	55286152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_55242599_55257075_55257261_55261200_55261310_55266338_55266404_55266512_55266615_55267895_55267996_55268872_55269052_55269767_55269801_55269881_55269934_55270904_55270979_55271739_55271818_55272834_55272970_55276259_55276395_55277236_55277333_55279577_55279651_55279849_55279939_55280204_55280322_55282018_55282163_55282633_55282736_55283264_55283337_55283804_55283955_55284797
transcript_2986.nnic	chr1	-	1673	5	NNC	ENSMUSG00000059498.14	novel	1347	5	NA	NA	205	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	75.648446778503	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGATCTCCTTTTGGTGA	NA	False	NA	-8	True	AATAAA	-23	NA	170886767	170878743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_170879422_170881507_170881763_170885259_170885518_170886154_170886176_170886306
transcript_29860.nic	chr19	-	1717	11	ISM	ENSMUSG00000024982.11	ENSMUST00000225963.2	2647	18	-26	18261	-4	7360	5prime_fragment	FALSE	canonical	3	11	junction_1	160.521182402822	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGCCTTGGTCATGAT	7435	False	NA	NA	False	NA	NA	NA	55304468	55277983	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_-_55278117_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304227
transcript_29864.known	chr19	-	2263	11	FSM	ENSMUSG00000024982.11	ENSMUST00000076891.7	2263	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_10	157.939355450122	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTATAGTTTTCACCA	7441	False	NA	-26	True	AATAAA	-19	NA	55304462	55286751	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304111
transcript_29865.known	chr19	-	2168	11	FSM	ENSMUSG00000024982.11	ENSMUST00000224897.2	2168	11	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_6	59.8815497461447	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGCATTGTTTTTAGTT	7439	False	NA	-7	True	AATAAA	-38	NA	55304464	55286732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_55287321_55290989_55291037_55291122_55291269_55292128_55292171_55292841_55293010_55297335_55297390_55298174_55298337_55300056_55300217_55301620_55301713_55302732_55303205_55304227
transcript_2987.nnic	chr1	-	1248	4	NNC	ENSMUSG00000059498.14	novel	1347	5	NA	NA	-532	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	74.9681413816711	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGATCTCCTTTTGGTGA	NA	False	NA	-8	True	AATAAA	-23	NA	170886155	170878743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_170879422_170881507_170881763_170885259_170885518_170886098
transcript_29870.known	chr19	+	3405	8	FSM	ENSMUSG00000024983.11	ENSMUST00000095950.3	3405	8	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_7	16.8219972606327	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGTTTTAAATGTTCCG	NA	False	NA	45	True	ATTAAA	-15	NA	55304782	55614993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942_55487014_55487674_55487737_55612248
transcript_29874.nnic	chr19	+	891	8	NNC	ENSMUSG00000024983.11	novel	3405	8	NA	NA	-17	-2598	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_7	37.8940520883353	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAAAATGGTCACATGAAT	NA	False	NA	NA	False	GATAAA	-31	NA	55304709	55612395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_55304977_55310370_55310430_55316777_55316889_55369373_55369452_55380215_55380301_55486942_55487014_55487674_55487748_55612248
transcript_29878.known	chr19	+	1599	4	FSM	ENSMUSG00000024983.11	ENSMUST00000226069.2	1599	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	51.1620519091597	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATCATGCATCTTTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	55304758	55355935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_55304977_55310370_55310430_55316777_55316889_55354724
transcript_29879.nic	chr19	+	556	3	ISM	ENSMUSG00000024983.11	ENSMUST00000225051.2	2919	4	-79	4063	-17	-4063	5prime_fragment	FALSE	canonical	3	111	junction_2	1.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGAGCAGCAGATCTT	NA	False	NA	NA	False	ATTAAA	-23	NA	55304709	55317007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_55304977_55310370_55310430_55316777
transcript_2988.known	chr1	-	1298	3	FSM	ENSMUSG00000059498.14	ENSMUST00000168817.2	1298	3	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	7.5	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGATCTCCTTTTGGTGAC	NA	False	NA	-7	True	AATAAA	-24	NA	170885623	170878742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_170879422_170881507_170881763_170885259
transcript_29880.known	chr19	+	2350	7	FSM	ENSMUSG00000025076.13	ENSMUST00000026062.10	2350	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	6.36177822799744	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGACTGGTCCGGTCTG	NA	False	NA	14	True	ATTAAA	-15	NA	56385560	56430776	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_56385750_56392847_56392958_56421673_56421811_56422233_56422363_56424658_56424835_56425150_56425281_56429297
transcript_29881.known	chr19	+	1341	1	FSM	ENSMUSG00000025076.13	ENSMUST00000235178.3	1341	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	56385691	56387032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_56385700_56387000
transcript_29882.known	chr19	+	8591	11	FSM	ENSMUSG00000025078.10	ENSMUST00000071423.7	8591	11	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	12.4338248338956	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGTTTCTGTCTTGAAT	NA	False	NA	17	True	ATTAAA	-17	NA	56536692	56591935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_56537293_56540190_56540344_56558847_56559304_56563189_56563312_56564586_56564717_56576601_56576702_56580007_56580240_56580824_56580948_56582091_56582299_56583231_56583452_56585687
transcript_29887.known	chr19	-	5927	17	FSM	ENSMUSG00000025085.17	ENSMUST00000111529.8	5927	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	24.9621588609639	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTGCTGAGCACCTGGTA	NA	False	NA	NA	False	NA	NA	NA	57107441	57021321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_57025770_57027838_57027920_57028918_57028994_57029846_57029855_57030346_57030408_57031428_57031494_57032227_57032331_57033312_57033405_57035356_57035498_57037893_57037942_57049684_57049815_57052197_57052234_57056522_57056679_57057291_57057370_57068244_57068304_57071947_57072036_57107183
transcript_29889.known	chr19	-	717	2	FSM	ENSMUSG00000025085.17	ENSMUST00000150425.2	717	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTATGTGCACAAGTGTGG	NA	False	NA	NA	False	AATAAA	-31	NA	57107456	57104453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_57104898_57107183
transcript_2989.known	chr1	+	793	6	FSM	ENSMUSG00000026649.15	ENSMUST00000151340.8	793	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.40908153700972	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTAGGTCCTAGTCTAGCT	NA	False	NA	NA	False	NA	NA	NA	170941557	170954348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_170941666_170950614_170950763_170952602_170952666_170952838_170952920_170953602_170953780_170954132
transcript_29891.known	chr19	+	3789	8	FSM	ENSMUSG00000025086.14	ENSMUST00000026073.14	3789	8	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_6	27.9131305507436	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGAGTTCTTTGCAGTAAG	NA	False	NA	18	True	AATAAA	-18	NA	57441343	57479437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57472012_57472086_57473504_57473645_57475696_57475754_57476440
transcript_29894.nnic	chr19	+	755	5	NNC	ENSMUSG00000025086.14	novel	2513	6	NA	NA	-6	-9808	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	89.3602260516389	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTAGATGTTGGATTAT	NA	False	NA	NA	False	ATTAAA	-19	NA	57441337	57462250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57462023
transcript_29898.known	chr19	+	1564	7	FSM	ENSMUSG00000025086.14	ENSMUST00000026072.5	1564	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	76.8803182442251	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAAGTTGTACAAGCCTAT	NA	False	NA	NA	False	AATAAA	-27	NA	57441365	57474634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_57441629_57446521_57446621_57452801_57452858_57461130_57461213_57472012_57472086_57473504_57473645_57473783
transcript_29900.known	chr19	+	1009	9	FSM	ENSMUSG00000025090.10	ENSMUST00000069419.8	1009	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	14.1686273153048	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAGAGGTCCTTGTACAG	NA	False	NA	NA	False	AATACA	-14	NA	58500452	58541460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_58500498_58500742_58500868_58501047_58501134_58514279_58514397_58515703_58515870_58524992_58525095_58525693_58525797_58539859_58539948_58541283
transcript_29904.known	chr19	+	855	7	FSM	ENSMUSG00000025090.10	ENSMUST00000235305.2	855	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	14.1273965518539	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTAAGTTGGTCTGTCC	NA	False	NA	NA	False	ACTAAA	-5	NA	58500423	58541517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_58500459_58500742_58500868_58501047_58501134_58514279_58514397_58515703_58515870_58539855_58539948_58541283
transcript_2991.known	chr1	-	3171	6	FSM	ENSMUSG00000058076.13	ENSMUST00000111336.10	3171	6	0	0	0	0	multi-exon	TRUE	canonical	3	578	junction_5	147.434866975217	722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGTGACCATACTTGTGA	456	False	NA	NA	False	AATAAA	-16	NA	170978172	170954733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_170957475_170963561_170963726_170966262_170966325_170971126_170971229_170973324_170973382_170978127
transcript_29912.nic	chr19	+	886	5	ISM	ENSMUSG00000025090.10	ENSMUST00000069419.8	1009	9	-37	25281	-8	-25281	5prime_fragment	FALSE	canonical	0	0	junction_1	16.7089048115069	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGGTTTTGTTATGAGC	NA	False	NA	NA	False	AATAAA	-20	NA	58500415	58516179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_+_58500498_58500742_58500868_58501047_58501134_58514279_58514397_58515703
transcript_29913.nnic	chr19	+	619	5	NIC	ENSMUSG00000025090.10	novel	855	7	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	20.017180121086	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATTTAAGTTGGTCTGTCC	NA	False	NA	NA	False	ACTAAA	-5	NA	58500415	58541517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_58500498_58500742_58500868_58501047_58501134_58539855_58539948_58541283
transcript_29915.nic	chr19	+	1131	4	NIC	ENSMUSG00000025090.10	novel	1009	9	NA	NA	-8	-25281	intron_retention	FALSE	canonical	3	27	junction_2	7.36357401145817	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGGTTTTGTTATGAGC	NA	False	NA	NA	False	AATAAA	-20	NA	58500415	58516179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_58500868_58501047_58501134_58514279_58514397_58515703
transcript_29916.known	chr19	-	1400	7	FSM	ENSMUSG00000025092.8	ENSMUST00000235263.2	1400	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.35889894354067	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTCTGTCAGGTGTTTT	NA	False	NA	NA	False	NA	NA	NA	58849399	58808150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_58808810_58809431_58809549_58810495_58810601_58813682_58813870_58815987_58816113_58816684_58816771_58849278
transcript_29917.known	chr19	-	612	3	FSM	ENSMUSG00000025092.8	ENSMUST00000237786.2	612	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGCATATGCATGTGTA	NA	False	NA	NA	False	AATAAA	-15	NA	58932086	58917075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_58917395_58920321_58920416_58931887
transcript_29918.known	chr19	-	1510	7	FSM	ENSMUSG00000025092.8	ENSMUST00000236429.2	1510	7	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_2	2.54405625374562	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTGTTCGCTCCACTGT	NA	False	NA	NA	False	CATAAA	-12	NA	58849444	58797329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_58798054_58809431_58809549_58810495_58810601_58813682_58813870_58815987_58816113_58816684_58816771_58849278
transcript_29919.known	chr19	+	396	1	FSM	ENSMUSG00000067038.7	ENSMUST00000086764.7	396	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAAATTTTGGCTGAAA	NA	False	NA	NA	False	AAGAAA	-1	NA	59310802	59311198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_59310800_59311200
transcript_29923.nnic	chr19	-	1683	9	NIC	ENSMUSG00000057858.9	novel	725	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	13	junction_8	105.606507256892	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9769	False	NA	NA	False	AGTAAA	-14	NA	60215133	60187330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60213296_60213332_60214741
transcript_29925.known	chr19	-	2035	8	FSM	ENSMUSG00000057858.9	ENSMUST00000065286.2	2035	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_7	81.0915330641484	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTGGGAAGTCATTGTC	9773	False	NA	NA	False	AATGAA	-25	NA	60215129	60187017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214663
transcript_29927.known	chr19	-	951	8	FSM	ENSMUSG00000057858.9	ENSMUST00000238054.2	951	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_7	86.2054972440971	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATATTTGTGTAAGAAAT	9784	False	NA	NA	False	NA	NA	NA	60215118	60187678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60215075
transcript_29930.nnic	chr19	-	1648	8	NIC	ENSMUSG00000057858.9	novel	2035	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	98	junction_7	67.6669515090684	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9769	False	NA	NA	False	AGTAAA	-14	NA	60215133	60187330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60208921_60209010_60209485_60209737_60214741
transcript_29937.known	chr19	-	1598	7	FSM	ENSMUSG00000057858.9	ENSMUST00000235293.2	1598	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	113.09533834582	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCAGTTGATTTATTTT	9793	False	NA	NA	False	NA	NA	NA	60215109	60187346	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60214663
transcript_29938.nnic	chr19	-	1560	7	NIC	ENSMUSG00000057858.9	novel	725	8	NA	NA	0	0	intron_retention	FALSE	canonical	3	31	junction_5	103.870779764517	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9769	False	NA	NA	False	AGTAAA	-14	NA	60215133	60187330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60214741
transcript_29939.nic	chr19	-	1239	7	NIC	ENSMUSG00000057858.9	novel	951	8	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	116.899885942345	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9756	False	NA	NA	False	AGTAAA	-14	NA	60215146	60187330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60209485_60209737_60215075
transcript_29943.nnic	chr19	-	1306	6	NIC	ENSMUSG00000057858.9	novel	1598	7	NA	NA	-1	0	intron_retention	FALSE	canonical	2	3	junction_5	111.662706397436	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9772	False	NA	NA	False	AGTAAA	-14	NA	60215130	60187330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_-_60187920_60188401_60188509_60201104_60201195_60208471_60208572_60208761_60208793_60214741
transcript_29948.known	chr19	-	1146	4	FSM	ENSMUSG00000057858.9	ENSMUST00000235995.2	1146	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	128.380510808906	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTGTGTGTGTGTGT	9801	False	NA	NA	False	AGTAAA	-14	NA	60215101	60187330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_60187920_60188401_60188509_60201104_60201195_60214741
transcript_2995.known	chr1	-	815	5	FSM	ENSMUSG00000058076.13	ENSMUST00000081560.5	815	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	383.770113479411	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGAGGTGGAGGAGGAGG	468	False	NA	NA	False	NA	NA	NA	170978160	170956975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_170957475_170963561_170963726_170966262_170966325_170973324_170973382_170978127
transcript_29951.known	chr19	-	5125	22	FSM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	309.066534016512	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAGTGTTTTGTCAATGG	8754	False	NA	-31	True	AATAAA	-17	NA	60779081	60749554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_60750743_60751502_60751703_60752469_60752672_60754771_60755434_60756012_60756102_60757145_60757331_60758303_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
transcript_29954.nic	chr19	-	2623	16	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	-68	8793	-53	876	5prime_fragment	FALSE	canonical	0	0	junction_11	338.891618203946	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAGAAGAGCAGAGGA	8686	False	NA	23	True	NA	NA	NA	60779149	60758347	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_-_60758458_60759452_60759576_60760081_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
transcript_29955.nic	chr19	-	2378	14	ISM	ENSMUSG00000024991.9	ENSMUST00000025955.8	5125	22	-68	10539	-53	-870	5prime_fragment	FALSE	canonical	0	0	junction_9	360.439508174748	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAGAAAGAGTAAGCTT	8686	False	NA	NA	False	NA	NA	NA	60779149	60760093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_-_60760196_60760530_60760636_60761129_60761478_60761944_60762131_60762338_60762456_60763730_60763830_60764188_60764294_60765063_60765236_60766376_60766586_60767795_60767996_60769791_60769956_60770322_60770460_60770605_60770797_60778906
transcript_29957.known	chr19	+	2307	9	FSM	ENSMUSG00000024993.16	ENSMUST00000025957.9	2307	9	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_1	50.1458809375207	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACTACTTGATGTC	NA	False	NA	NA	False	ATTAAA	-13	NA	60800048	60824665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_60800112_60803049_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
transcript_29960.nic	chr19	+	2388	9	NIC	ENSMUSG00000024993.16	novel	2307	9	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	138	junction_1	88.7623230881211	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACTACTTGATGTC	NA	False	NA	NA	False	ATTAAA	-13	NA	60799987	60824665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr19_+_60800112_60803029_60803247_60805968_60806049_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
transcript_29964.known	chr19	+	2267	8	FSM	ENSMUSG00000024993.16	ENSMUST00000119633.8	2267	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	141.985771060601	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACTACTTGATGTC	NA	False	NA	NA	False	ATTAAA	-13	NA	60800028	60824665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_+_60800112_60803029_60803247_60809644_60809794_60810732_60810845_60814268_60814370_60819224_60819333_60821021_60821117_60823263
transcript_29967.known	chr19	-	1309	14	FSM	ENSMUSG00000063698.10	ENSMUST00000135808.8	1309	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_12	6.9961950774782	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATCAAAAGGTATACCTTA	NA	False	NA	NA	False	AATAAA	-30	NA	60849917	60827185	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_60827489_60830556_60830675_60832646_60832733_60839396_60839513_60840449_60840529_60842124_60842191_60842301_60842359_60842444_60842499_60844264_60844291_60845647_60845703_60845787_60845815_60847101_60847177_60848466_60848533_60849736
transcript_29969.nnic	chr19	-	1015	5	NNC	ENSMUSG00000063698.10	novel	1218	13	NA	NA	9843	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	13.7204227340122	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTGAAAGAAATCATCAAAAG	NA	False	NA	NA	False	AATAAA	-20	NA	60840019	60827195	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr19_-_60827489_60830556_60830675_60832646_60832733_60839396_60839513_60839617
transcript_29971.known	chr19	-	1478	7	FSM	ENSMUSG00000024997.8	ENSMUST00000025961.7	1478	7	0	0	0	0	multi-exon	FALSE	canonical	3	658	junction_4	52.5148127251308	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGGCACCGTTTCTCC	1447	False	NA	-1	True	AATAAA	-34	NA	60862994	60852488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_60853158_60853603_60853770_60855953_60856058_60858441_60858578_60859857_60860000_60861565_60861702_60862869
transcript_29976.known	chr19	-	1849	12	FSM	ENSMUSG00000059326.8	ENSMUST00000076046.7	1849	12	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_11	40.804310256849	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTTGTTTTCTTTTG	9819	False	NA	-2	True	NA	NA	NA	61216856	61212839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr19_-_61213472_61213570_61213653_61213761_61213859_61213960_61214091_61214229_61214260_61214365_61214494_61214652_61214823_61214962_61215093_61215243_61215365_61215467_61215623_61215709_61215804_61216776
transcript_29979.nic	chr19	-	1435	8	ISM	ENSMUSG00000059326.8	ENSMUST00000237386.2	1771	11	686	-9	-7	0	3prime_fragment	FALSE	canonical	3	89	junction_6	20.6861878398834	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCTTTTGTTTTCTTTTG	9864	False	NA	-2	True	NA	NA	NA	61215128	61212839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr19_-_61213472_61213570_61213653_61213761_61213859_61213960_61214091_61214229_61214260_61214365_61214494_61214652_61214823_61214962
transcript_29987.known	chr2	+	4461	14	FSM	ENSMUSG00000026643.17	ENSMUST00000081932.13	4461	14	0	0	0	0	multi-exon	TRUE	canonical	3	230	junction_10	26.4695873268632	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGAGTGTTTTCTGTAC	987	False	NA	21	True	AATAAA	-21	NA	3285248	3329914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_3285444_3305848_3305985_3306433_3306477_3308019_3308070_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
transcript_29988.known	chr2	+	1676	13	FSM	ENSMUSG00000026643.17	ENSMUST00000091504.5	1676	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	77.5622957513651	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGTAGTTGTTAACAAT	1043	False	NA	10	True	AATAAA	-19	NA	3285304	3327235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_3285444_3305848_3305985_3306433_3306477_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
transcript_29989.known	chr2	+	2162	12	FSM	ENSMUSG00000026643.17	ENSMUST00000102989.10	2162	12	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_2	78.3416969921083	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACAGCTGACTGATGAGA	1032	False	NA	NA	False	NA	NA	NA	3285293	3327753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_3285444_3305848_3305985_3310503_3310649_3313492_3313612_3313698_3313791_3313897_3314015_3315730_3315902_3317176_3317286_3323607_3323779_3325867_3326036_3326300_3326439_3327107
transcript_2999.known	chr1	-	4712	10	FSM	ENSMUSG00000005674.10	ENSMUST00000005817.9	4712	10	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_9	16.1314048434171	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGAGGCTAGATGTCAGT	9509	False	NA	NA	False	CATAAA	-16	NA	171050083	171043579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472_171049723_171049943
transcript_29991.known	chr2	+	2450	2	FSM	ENSMUSG00000026643.17	ENSMUST00000155761.2	2450	2	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAAATAAAATTA	1056	False	NA	NA	False	NA	NA	NA	3285317	3308172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_3285444_3305848
transcript_29994.known	chr2	-	1042	2	FSM	ENSMUSG00000049950.7	ENSMUST00000062672.7	1042	2	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	0	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTAGGATCCTGCATGGA	2317	False	NA	-15	True	AATAAA	-18	NA	3333680	3329985	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_3330911_3333563
transcript_29995.known	chr2	+	531	4	FSM	ENSMUSG00000026644.8	ENSMUST00000115089.2	531	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	7.54247233265651	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGTCTGTGTATGGAT	1038	False	NA	NA	False	AATAAA	-16	NA	3337204	3342030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_3337259_3341369_3341488_3341591_3341655_3341734
transcript_29996.known	chr2	+	534	4	FSM	ENSMUSG00000026644.8	ENSMUST00000228935.2	534	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	3.77123616632825	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGTCTGTGTATGGAT	1038	False	NA	NA	False	AATAAA	-16	NA	3337204	3342030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_3337259_3341369_3341491_3341591_3341655_3341734
transcript_29997.known	chr2	+	2469	14	FSM	ENSMUSG00000026648.19	ENSMUST00000102988.10	2469	14	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	4.46419019339905	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAAACAGGCTCAAAACCA	1021	False	NA	NA	False	NA	NA	NA	3425186	3455129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_3425364_3426400_3426453_3430304_3430390_3434783_3434844_3437474_3437531_3438025_3438128_3438712_3438786_3438988_3439130_3441794_3441897_3444690_3444828_3445237_3445293_3448110_3448200_3451315_3451411_3453884
transcript_3.known	ERCC-00004	+	507	1	FSM	ERCC-00004A	DQ516752	507	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	666	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	GATAAA	-39	NA	0	507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00004_+_0_500
transcript_30.known	ERCC-00081	+	517	1	FSM	ERCC-00081A	DQ854991	517	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00081_+_0_500
transcript_3000.nic	chr1	-	1408	10	NIC	ENSMUSG00000005674.10	novel	4712	10	NA	NA	0	-852	combination_of_known_junctions	FALSE	canonical	2	13	junction_9	36.8945778745768	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTGTTATTTTTGTT	9509	False	NA	-12	True	AGTAAA	-41	NA	171050083	171046783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048373_171048476_171048736_171048830_171049140_171049209_171049472_171049623_171049943
transcript_30012.known	chr2	-	1795	14	FSM	ENSMUSG00000109865.2	ENSMUST00000027961.12	1795	14	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_5	73.9537677425134	1204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGGAGTCTTTGTTTTCTT	3942	False	NA	-5	True	ATTAAA	-20	NA	3513851	3489886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_3490107_3490734_3490806_3491973_3492148_3492557_3492771_3495534_3495638_3497600_3497757_3499058_3499221_3500243_3500349_3502084_3502176_3503530_3503637_3503773_3503823_3512051_3512135_3512210_3512292_3513670
transcript_3002.known	chr1	-	2753	9	FSM	ENSMUSG00000005674.10	ENSMUST00000111326.8	2753	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	42.2327997532723	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAGTGTTTCACAGATCC	9575	False	NA	NA	False	AGTAAA	-16	NA	171050017	171045370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_171047230_171047362_171047466_171047677_171047755_171047869_171047993_171048115_171048222_171048736_171048830_171049140_171049209_171049472_171049723_171049943
transcript_30023.known	chr2	-	4314	5	FSM	ENSMUSG00000051396.16	ENSMUST00000124331.8	4314	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	532.771702983557	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGGGTTTGTCTACTTC	3999	False	NA	NA	False	AATAAA	-19	NA	3513794	3505563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_3508787_3509329_3510133_3512051_3512135_3512210_3512292_3513670
transcript_30024.known	chr2	+	3156	4	FSM	ENSMUSG00000026655.16	ENSMUST00000027965.11	3156	4	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	8.49836585598797	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATGTTTGTCTCGTTTGT	944	False	NA	19	True	AATAAA	-25	NA	3714494	3783179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_3714674_3773832_3774017_3779454_3779606_3780537
transcript_30029.known	chr2	-	1579	10	FSM	ENSMUSG00000039449.15	ENSMUST00000152362.7	1579	10	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	16.2305914484172	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTATGGGTCATTGAAT	NA	False	NA	NA	False	NA	NA	NA	4656924	4628838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_4629338_4638243_4638400_4640441_4640514_4640638_4640780_4641958_4642028_4643659_4643807_4648461_4648576_4650379_4650485_4653051_4653130_4656726
transcript_3003.nnic	chr1	+	679	5	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3278	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	60.9631035955356	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCATGCCTCTTGTGTCTT	NA	False	NA	11	True	AATAAA	-17	NA	171049344	171053942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_171049548_171050883_171050916_171052855_171052936_171053234_171053368_171053711
transcript_30037.known	chr2	+	5319	9	FSM	ENSMUSG00000026662.14	ENSMUST00000027973.14	5319	9	0	0	0	0	multi-exon	FALSE	canonical	3	382	junction_1	74.2242169039189	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCATGTCTCTGTTTACT	4092	False	NA	NA	False	AATAAA	-17	NA	4886374	4915368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_4886672_4889142_4889417_4893993_4894098_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
transcript_30043.nic	chr2	+	1312	8	NIC	ENSMUSG00000026662.14	novel	5319	9	NA	NA	226	-1257	combination_of_known_junctions	FALSE	canonical	3	91	junction_2	174.392707205693	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCATTGTGTCTACACATC	4318	False	NA	20	True	ATTAAA	-20	NA	4886600	4911691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_4886672_4889142_4889417_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
transcript_30045.nic	chr2	+	2932	8	NIC	ENSMUSG00000026662.14	novel	5319	9	NA	NA	226	363	combination_of_known_junctions	FALSE	canonical	3	91	junction_2	174.392707205693	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTTGGACTTGCTTCTA	4318	False	NA	23	True	AATAAA	-32	NA	4886600	4913311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_4886672_4889142_4889417_4896397_4896506_4897995_4898151_4901499_4901591_4904274_4904375_4910282_4910496_4911391
transcript_3005.nnic	chr1	+	658	4	NNC	ENSMUSG00000005681.13	novel	518	4	NA	NA	-3289	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	24.4176620957499	70	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCATGCCTCTTGTGTCTT	NA	False	NA	11	True	AATAAA	-17	NA	171049333	171053942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_171049548_171052855_171052936_171053234_171053368_171053711
transcript_30052.known	chr2	+	1438	9	FSM	ENSMUSG00000026664.8	ENSMUST00000027975.8	1438	9	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_4	31.960669188864	627	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCATATTAAGTCAATTTCT	991	False	NA	9	True	AATAAA	-20	NA	4923829	4943541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_4923956_4927638_4927698_4930408_4930520_4932160_4932330_4933481_4933564_4935523_4935706_4940779_4940930_4942486_4942622_4943117
transcript_30055.known	chr2	-	3494	20	FSM	ENSMUSG00000026669.15	ENSMUST00000027980.8	3494	20	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_19	72.612354435182	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	NA	False	NA	0	True	AATAAA	-38	NA	5017602	4995534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074_5006192_5008818_5008987_5009756_5009923_5011154_5011390_5011877_5012013_5012138_5012244_5013290_5013624_5015499_5015587_5017515
transcript_30059.known	chr2	-	2356	12	FSM	ENSMUSG00000026669.15	ENSMUST00000150091.8	2356	12	0	0	0	0	multi-exon	FALSE	canonical	3	627	junction_5	75.7261268056919	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCTGTGAAACGTGACTC	6372	False	NA	0	True	AATAAA	-38	NA	5006369	4995534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_4996288_4996905_4996949_4997688_4997835_4998553_4998668_4999380_4999494_5000531_5000677_5001914_5002144_5003344_5003454_5003540_5003652_5004490_5004592_5005670_5005868_5006074
transcript_30060.known	chr2	-	2411	15	FSM	ENSMUSG00000026672.12	ENSMUST00000027986.5	2411	15	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	40.4028817925511	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTGTTATCTGATTTA	NA	False	NA	-2	True	AGTAAA	-15	NA	5068749	5025454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_5026040_5026133_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797_5051011_5057798_5058002_5059350_5059528_5068717
transcript_30061.known	chr2	-	2614	14	FSM	ENSMUSG00000026672.12	ENSMUST00000114996.8	2614	14	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_13	32.625179951441	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTTATCTGATTTATT	NA	False	NA	0	True	AGTAAA	-17	NA	5068856	5025452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_5026293_5028877_5028961_5031924_5032056_5036070_5036230_5037941_5038036_5038964_5039115_5039778_5039895_5041481_5041582_5044949_5045085_5047257_5047332_5050797_5051011_5057798_5058002_5059350_5059528_5068717
transcript_30065.known	chr2	-	1295	11	FSM	ENSMUSG00000039145.17	ENSMUST00000114987.4	1295	11	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	6.22976725086901	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGCACCTGCATAGGACTG	1177	False	NA	NA	False	NA	NA	NA	5680857	5303697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_5303913_5306306_5306425_5308101_5308190_5315802_5315882_5317899_5318013_5343992_5344069_5359479_5359607_5366799_5366939_5449880_5449956_5570459_5570592_5680724
transcript_30073.known	chr2	-	1827	13	FSM	ENSMUSG00000039128.14	ENSMUST00000043864.9	1827	13	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_5	82.7531050105607	1230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTGCTCTCTGGTTC	NA	False	NA	NA	False	AATAAA	-14	NA	5849975	5799104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
transcript_30083.nnic	chr2	-	1241	12	NIC	ENSMUSG00000039128.14	novel	1827	13	NA	NA	-41	0	combination_of_known_splicesites	FALSE	canonical	3	91	junction_9	296.801433468727	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGAAGCCTACTGTGATGG	NA	False	NA	-7	True	AATAAA	-15	NA	5849793	5799475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_5799692_5800359_5800498_5803171_5803301_5808757_5808787_5809721_5809845_5812241_5812318_5815606_5815656_5826086_5826194_5827912_5828009_5838466_5838525_5846763_5846836_5849645
transcript_30086.known	chr2	-	2448	12	FSM	ENSMUSG00000025816.16	ENSMUST00000102981.10	2448	12	0	0	0	0	multi-exon	TRUE	canonical	3	221	junction_3	37.3630833845388	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGTGTTCTCTAAGAGT	NA	False	NA	-17	True	AATAAA	-10	NA	5900243	5875797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_5876833_5878553_5878631_5879037_5879230_5881174_5881373_5881651_5881813_5882665_5882820_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
transcript_30089.nnic	chr2	+	1705	11	NNC	ENSMUSG00000025817.13	novel	4764	10	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_2	256.400955536441	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAAGACTTGGGGGTTT	1672	False	NA	NA	False	NA	NA	NA	5849799	5873547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_5850197_5852931_5853002_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869260_5871043_5871053_5871164_5871219_5872899
transcript_30099.known	chr2	-	2110	11	FSM	ENSMUSG00000025816.16	ENSMUST00000193792.6	2110	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	89.7356673792534	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAACTGTTGCAGTTGT	NA	False	NA	-59	True	AATAAA	-9	NA	5900145	5875839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_5876833_5878553_5878631_5879037_5879230_5881651_5881813_5882665_5882820_5887391_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900067
transcript_30101.known	chr2	+	1590	10	FSM	ENSMUSG00000025817.13	ENSMUST00000179748.8	1590	10	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	225.953780917937	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGAAGACTTGGGGGTTT	1717	False	NA	NA	False	NA	NA	NA	5849844	5873547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_5850197_5859626_5859730_5860790_5860859_5865837_5865888_5867111_5867220_5868389_5868486_5869157_5869259_5871042_5871053_5871164_5871219_5872899
transcript_3012.known	chr1	-	1623	13	FSM	ENSMUSG00000013593.13	ENSMUST00000013737.13	1623	13	0	0	0	0	multi-exon	FALSE	canonical	3	1142	junction_12	107.460457843804	1952	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTAATGTGTCTTTCTT	NA	False	NA	-1	True	ATTAAA	-28	NA	171074691	171062421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066083_171066162_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
transcript_30131.known	chr2	-	562	5	FSM	ENSMUSG00000039128.14	ENSMUST00000150876.2	562	5	0	0	0	0	multi-exon	FALSE	canonical	3	1033	junction_1	96.4507646418627	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCCTCTCAGTTGAGCAAG	NA	False	NA	NA	False	TTTAAA	-5	NA	5849662	5827626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_5828009_5837891_5837925_5838466_5838525_5846763_5846836_5849645
transcript_30136.known	chr2	+	1677	3	FSM	ENSMUSG00000025817.13	ENSMUST00000138549.8	1677	3	0	0	0	0	multi-exon	FALSE	canonical	3	607	junction_1	40	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAGAAAAAAAAAAAAAA	1936	False	NA	NA	False	NA	NA	NA	5850063	5862231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_5850197_5859626_5859730_5860790
transcript_30138.known	chr2	-	1303	6	FSM	ENSMUSG00000025816.16	ENSMUST00000194565.2	1303	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	114.035783857524	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	5900145	5886618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_5887502_5887628_5887761_5891309_5891389_5896100_5896167_5897964_5898033_5900070
transcript_30139.nic	chr2	-	1249	3	ISM	ENSMUSG00000025815.14	ENSMUST00000026924.7	3852	18	-55	33000	-6	-5296	5prime_fragment	FALSE	canonical	3	50	junction_2	4	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTGGATAGCATTAGACCT	NA	False	NA	NA	False	AATAAA	-19	NA	5947609	5934988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_5935798_5937197_5937354_5947325
transcript_30140.known	chr2	+	5174	22	FSM	ENSMUSG00000043241.15	ENSMUST00000060092.13	5174	22	0	0	0	0	multi-exon	TRUE	canonical	3	171	junction_5	24.2975694686972	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGATTTGTTTTATTTGGT	1678	False	NA	17	True	AATAAA	-21	NA	5956279	6061514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_5956365_5962281_5962662_5965743_5966524_5978279_5978441_5980718_5980914_5984584_5984735_5987802_5987907_5993197_5993284_6008355_6008465_6015125_6015240_6023712_6023830_6028093_6028280_6030925_6031130_6032023_6032300_6034172_6034357_6038922_6039063_6044919_6045022_6045273_6045373_6051708_6051877_6055148_6055291_6056319_6056441_6060243
transcript_30141.nic	chr2	+	308	2	ISM	ENSMUSG00000043241.15	ENSMUST00000060092.13	5174	22	-35	99045	-35	-97844	5prime_fragment	FALSE	canonical	3	197	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGACTGGAAGAAGATA	1643	False	NA	-9	True	NA	NA	NA	5956244	5962469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_5956365_5962281
transcript_30142.known	chr2	-	4398	4	FSM	ENSMUSG00000045319.14	ENSMUST00000114942.9	4398	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	5.90668171555645	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAATGTG	NA	False	NA	NA	False	ATTAAA	-43	NA	6135022	6102417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_6106172_6107623_6107877_6118703_6118925_6134852
transcript_30143.known	chr2	-	2061	4	FSM	ENSMUSG00000045319.14	ENSMUST00000054254.12	2061	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	15.3260852434302	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAAATGCTTGTTAAAT	NA	False	NA	NA	False	NA	NA	NA	6134957	6104835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_6106172_6107623_6107877_6118703_6118925_6134706
transcript_30144.known	chr2	-	1851	5	FSM	ENSMUSG00000039063.6	ENSMUST00000042658.5	1851	5	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	2.1650635094611	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCGTCTATCCACCTAACT	NA	False	NA	NA	False	CATAAA	-22	NA	6217844	6193275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_6194463_6200393_6200595_6211225_6211324_6213278_6213401_6217601
transcript_30146.known	chr2	-	4792	7	FSM	ENSMUSG00000025782.13	ENSMUST00000026888.11	4792	7	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_4	19.5078331845327	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTTCCATTTTCTT	NA	False	NA	0	True	AATAAA	-20	NA	10053407	9919362	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_9921278_9922913_9923021_9925862_9926113_9945737_9945821_9955924_9957757_10047237_10047481_10053045
transcript_30149.nic	chr2	-	1134	3	ISM	ENSMUSG00000025782.13	ENSMUST00000026888.11	4792	7	-17	37882	-17	-36356	5prime_fragment	FALSE	canonical	3	137	junction_1	7	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGAAGTCACCTGGACG	NA	False	NA	NA	False	NA	NA	NA	10053424	9957244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_9957757_10047237_10047481_10053045
transcript_30153.known	chr2	-	1166	10	FSM	ENSMUSG00000025781.15	ENSMUST00000114897.9	1166	10	0	0	0	0	multi-exon	FALSE	canonical	3	3857	junction_2	289.314942238504	1598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGTCTCATTATTAATAAT	9504	False	NA	-2	True	AATAAA	-19	NA	10085321	10060840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_10060973_10061580_10061618_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
transcript_30154.known	chr2	-	1060	9	FSM	ENSMUSG00000025781.15	ENSMUST00000026887.14	1060	9	0	0	0	0	multi-exon	TRUE	canonical	3	78	junction_1	1503.84357564209	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAATTGTAACTTTCAGAA	9587	False	NA	12	True	AATAAA	-33	NA	10085238	10060826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_10060973_10063806_10063904_10064311_10064468_10068096_10068162_10068253_10068398_10068917_10069123_10073420_10073553_10074503_10074539_10085158
transcript_30155.known	chr2	+	1472	5	FSM	ENSMUSG00000037262.8	ENSMUST00000042512.8	1472	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	5.40832691319598	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAAGACACAGTGGCATC	4825	False	NA	NA	False	NA	NA	NA	10085434	10097617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_10085556_10090540_10090636_10094923_10094968_10095051_10095175_10096528
transcript_30157.known	chr2	+	1901	6	FSM	ENSMUSG00000061186.16	ENSMUST00000114864.9	1901	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	9.3936148526539	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAGAAAAAAATAATG	4689	False	NA	NA	False	AATATA	-9	NA	10377246	10443948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_10377428_10384995_10385047_10398075_10398218_10406799_10406895_10409248_10409490_10442757
transcript_30159.nnic	chr2	-	714	5	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8789	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	256.084336693988	34	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTGTGTTCATTCTGT	NA	False	NA	-13	True	AATAAA	-14	NA	10370063	10344093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_10344284_10346331_10346540_10350061_10350197_10351924_10352011_10369968
transcript_30163.nnic	chr2	-	639	4	NNC	ENSMUSG00000086748.2	novel	1020	4	NA	NA	8778	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	241.59608164593	266	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTTTGTGTTCATTCTGT	NA	False	NA	-13	True	AATAAA	-14	NA	10370074	10344093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_10344284_10346331_10346540_10350061_10350197_10369968
transcript_30165.known	chr2	-	1599	12	FSM	ENSMUSG00000037197.12	ENSMUST00000040314.12	1599	12	0	0	0	0	multi-exon	FALSE	canonical	3	1239	junction_6	93.4948621914506	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGCTCTCTGGTTGTTTCT	NA	False	NA	-24	True	TATAAA	-18	NA	11608073	11590247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_11590540_11590644_11590718_11591677_11591777_11592531_11592606_11593738_11593903_11595499_11595642_11598218_11598276_11600141_11600240_11601439_11601607_11602862_11602980_11605429_11605568_11607895
transcript_30167.nic	chr2	-	3564	21	NIC	ENSMUSG00000058594.16	novel	3567	21	NA	NA	-1	0	intron_retention	FALSE	canonical	3	88	junction_20	47.1269296687149	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCAGTACTGTCATTT	NA	False	NA	-2	True	ATTAAA	-35	NA	11782362	11747385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782214
transcript_30168.known	chr2	-	3567	21	FSM	ENSMUSG00000058594.16	ENSMUST00000071564.14	3567	21	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_20	31.6521721213569	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCAGTACTGTCATTT	NA	False	NA	-2	True	ATTAAA	-35	NA	11782393	11747385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_11747845_11748436_11748569_11751870_11751978_11753174_11753301_11753747_11753946_11754341_11754418_11756261_11756384_11756477_11756578_11760451_11760589_11761227_11761315_11761412_11761501_11762250_11762474_11763090_11763260_11764739_11764835_11765291_11765385_11767641_11767833_11768680_11768817_11768913_11769045_11771932_11772523_11774586_11774743_11782242
transcript_3017.known	chr1	-	1545	12	FSM	ENSMUSG00000013593.13	ENSMUST00000111318.8	1545	12	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_7	412.075336127544	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTAATGTGTCTTTCTT	NA	False	NA	-1	True	ATTAAA	-28	NA	171074691	171062421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065634_171065855_171065942_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
transcript_30170.nic	chr2	+	2253	7	NIC	ENSMUSG00000047909.12	novel	1618	7	NA	NA	-94	0	intron_retention	FALSE	canonical	3	24	junction_3	18.9560896108172	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGGCCTATTCAATT	4059	False	NA	33	True	AATAAA	-35	NA	11782592	11795136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_11783714_11784487_11784635_11786287_11786331_11788451_11788561_11789101_11789264_11791034_11791114_11794544
transcript_30171.known	chr2	+	1485	7	FSM	ENSMUSG00000047909.12	ENSMUST00000156067.8	1485	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	24.8439574589521	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGGCCTATTCAATT	4841	False	NA	33	True	AATAAA	-35	NA	11783374	11795136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_11783714_11784487_11784635_11786287_11786345_11788451_11788561_11789101_11789264_11791034_11791114_11794544
transcript_30172.known	chr2	+	1618	7	FSM	ENSMUSG00000047909.12	ENSMUST00000056108.12	1618	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	18.7742435858871	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGGCCTATTCAATT	4768	False	NA	33	True	AATAAA	-35	NA	11783301	11795136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_11783714_11784487_11784709_11786287_11786331_11788451_11788561_11789101_11789264_11791034_11791114_11794544
transcript_30174.known	chr2	-	2316	15	FSM	ENSMUSG00000026767.13	ENSMUST00000129489.8	2316	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	43.9893887946924	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	12424255	12352073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408978_12410670_12410732_12414811_12414892_12423969
transcript_30184.known	chr2	-	2257	14	FSM	ENSMUSG00000026767.13	ENSMUST00000155530.8	2257	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	44.4355793262468	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	12424246	12352073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12408808_12408980_12410670_12410732_12414811_12414892_12423969
transcript_30188.known	chr2	-	1984	12	FSM	ENSMUSG00000026767.13	ENSMUST00000154899.7	1984	12	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_9	46.6171323098428	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	12424259	12352073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12410670_12410732_12414811_12414892_12423969
transcript_3019.known	chr1	-	1845	12	FSM	ENSMUSG00000013593.13	ENSMUST00000136976.7	1845	12	0	0	0	0	multi-exon	FALSE	canonical	3	1142	junction_11	112.190068946623	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTAATGTGTCTTTCTT	NA	False	NA	-1	True	ATTAAA	-28	NA	171074691	171062421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_171062657_171062841_171062900_171063925_171064010_171064174_171064271_171064708_171064839_171065513_171065942_171066083_171066162_171066278_171066467_171066842_171066964_171068515_171068707_171073659_171073767_171074562
transcript_30190.known	chr2	-	1843	10	FSM	ENSMUSG00000026767.13	ENSMUST00000194533.6	1843	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	51.3963057710725	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	12424259	12352073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12423969
transcript_30193.nic	chr2	-	1720	8	NIC	ENSMUSG00000026767.13	novel	2344	15	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_7	51.1843407175855	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTGCACTTTTACATTTG	NA	False	NA	-22	True	AATAAA	-19	NA	12424290	12352073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12423969
transcript_30195.nic	chr2	-	1463	8	NIC	ENSMUSG00000026767.13	novel	2344	15	NA	NA	-9	112	combination_of_known_junctions	FALSE	canonical	3	20	junction_7	51.1843407175855	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTATGTGGGAACTTCTAT	NA	False	NA	-2	True	AATAAA	-23	NA	12424290	12352330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12423969
transcript_30196.nic	chr2	-	1382	8	NIC	ENSMUSG00000026767.13	novel	2344	15	NA	NA	-9	31	combination_of_known_junctions	FALSE	canonical	3	20	junction_7	51.1843407175855	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCCTGGCTATTTGGTAAC	NA	False	NA	-83	True	AATAAA	-13	NA	12424290	12352411	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12423969
transcript_30197.nic	chr2	-	1065	8	NIC	ENSMUSG00000026767.13	novel	2344	15	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_7	51.1843407175855	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATACGTTTAAATTATTTGT	NA	False	NA	-3	True	ATTAAA	-22	NA	12424290	12352728	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_12353015_12355739_12355812_12360087_12360176_12361715_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12423969
transcript_30198.known	chr2	-	1324	12	FSM	ENSMUSG00000026767.13	ENSMUST00000130225.7	1324	12	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_8	26.1641354428361	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCCAATCTGAGGACAGAAG	NA	False	NA	NA	False	AATAAA	-21	NA	12424242	12361595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_12361789_12369257_12369331_12386913_12386995_12391419_12391491_12400989_12401070_12402303_12402378_12404833_12404949_12405835_12405888_12408808_12408980_12410670_12410732_12414811_12414892_12423969
transcript_30199.known	chr2	+	1232	6	FSM	ENSMUSG00000026730.13	ENSMUST00000154269.7	1232	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	7.33212111192934	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAGATGCTCCTTAGAGG	4712	False	NA	NA	False	NA	NA	NA	12928851	13005791	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_12929010_12979179_12979265_12982970_12983429_12985103_12985370_12999560_12999702_13005667
transcript_30200.nnic	chr2	+	1433	5	NIC	ENSMUSG00000026730.13	novel	1232	6	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_2	19.9562020434751	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATGTGTTTTCCACTTAT	4687	False	NA	NA	False	AATAAA	-39	NA	12928826	13006425	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_12929010_12979179_12979265_12985103_12985370_12999560_12999702_13005667
transcript_30201.known	chr2	+	3571	5	FSM	ENSMUSG00000026730.13	ENSMUST00000134794.8	3571	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	18.3490462967425	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAGTCTAAATGTATTCT	4763	False	NA	NA	False	AATAAA	-17	NA	12928902	13008266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_12929010_12982970_12983429_12985103_12985370_12999560_12999702_13005667
transcript_30205.known	chr2	-	1546	9	FSM	ENSMUSG00000026727.11	ENSMUST00000028059.9	1546	9	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_5	20.3588893361106	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCACACGTTTCTTCTTG	7043	False	NA	-7	True	AATAAA	-12	NA	13276226	13081822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13246555_13246607_13275721_13275834_13276010
transcript_30207.known	chr2	-	1604	8	FSM	ENSMUSG00000026727.11	ENSMUST00000114791.9	1604	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	120.515389820858	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCAGTTTGTCAGGGTTTT	7125	False	NA	NA	False	ATTAAA	-21	NA	13276144	13081631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_13082419_13174808_13174942_13221580_13221696_13221999_13222083_13223819_13223939_13229115_13229237_13275721_13275834_13276010
transcript_30214.nnic	chr2	-	1594	12	NNC	ENSMUSG00000026723.11	novel	3788	11	NA	NA	-32	-2158	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	11.4437178262115	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAAGAATGCTTGAATTTT	8997	False	NA	NA	False	ATTAAA	-28	NA	13549511	13515982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_13516121_13516188_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530506_13538194_13538305_13549379
transcript_30216.known	chr2	-	3788	11	FSM	ENSMUSG00000026723.11	ENSMUST00000124488.7	3788	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_8	5.37028863283902	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCATTGTGAAACTTACT	9029	False	NA	NA	False	ATTAAA	-23	NA	13549479	13513824	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530506_13538194_13538305_13549379
transcript_3022.known	chr1	-	1821	13	FSM	ENSMUSG00000062729.13	ENSMUST00000073120.11	1821	13	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_8	32.2076595444831	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5189	False	NA	-15	True	AGTAAA	-16	NA	171108760	171104564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171107149_171107442_171107576_171107713_171107830_171107961_171108097_171108247_171108343_171108446
transcript_30224.nic	chr2	-	1653	10	NIC	ENSMUSG00000026723.11	novel	3788	11	NA	NA	-72	-2097	combination_of_known_junctions	FALSE	canonical	3	4	junction_9	11.4998658070539	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATGATCCTTAGAAAATTA	8957	False	NA	NA	False	TATAAA	-18	NA	13549551	13515921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_13516502_13520825_13520956_13521469_13521528_13524566_13524911_13526073_13526158_13526888_13526959_13527634_13527701_13528236_13528309_13530428_13530506_13549379
transcript_30228.nic	chr2	+	2003	10	NIC	ENSMUSG00000026728.10	novel	2193	9	NA	NA	-118	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	86.9850278020786	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGGTGTGTTATTTTA	186	False	NA	14	True	AATAAA	-14	NA	13578619	13587637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_13578872_13579204_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
transcript_30229.known	chr2	+	2193	9	FSM	ENSMUSG00000026728.10	ENSMUST00000028062.8	2193	9	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	35.7786161694384	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGGTGTGTTATTTTA	10	False	NA	14	True	AATAAA	-14	NA	13578762	13587637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_13579806_13580351_13580413_13583223_13583320_13583399_13583562_13584231_13584358_13584828_13585050_13585450_13585495_13586423_13586510_13587283
transcript_3023.nnic	chr1	-	1838	13	NNC	ENSMUSG00000062729.13	novel	1821	13	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_10	36.6727267719335	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5188	False	NA	-15	True	AGTAAA	-16	NA	171108761	171104564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171107149_171107442_171107576_171107713_171107846_171107961_171108097_171108247_171108343_171108446
transcript_30230.known	chr2	-	871	6	FSM	ENSMUSG00000063275.16	ENSMUST00000091429.12	871	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	43.3340512761039	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTGCATTGTTTCTTGA	NA	False	NA	-2	True	AATAAA	-19	NA	14060831	14031641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_14031818_14040589_14040769_14049593_14049683_14049758_14049778_14049948_14050067_14060541
transcript_30231.known	chr2	-	801	2	FSM	ENSMUSG00000086657.3	ENSMUST00000152524.2	801	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAAATGGCATATTATAAT	NA	False	NA	NA	False	AATAAA	-16	NA	14078745	14075142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_14075592_14078393
transcript_30233.known	chr2	+	5000	14	FSM	ENSMUSG00000026718.18	ENSMUST00000102960.11	5000	14	0	0	0	0	multi-exon	TRUE	canonical	3	181	junction_8	24.7443735759998	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATCTTTGTTTCTTTTTTC	4682	False	NA	NA	False	TATAAA	-17	NA	14078908	14154445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_14079148_14107211_14107297_14120627_14120704_14120788_14120885_14122199_14122347_14133356_14133448_14133789_14133983_14135834_14135930_14139163_14139253_14142297_14142386_14142946_14143002_14143766_14143921_14146512_14146689_14151029
transcript_30235.nic	chr2	+	1192	9	NIC	ENSMUSG00000026718.18	novel	3981	13	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_8	77.975957833168	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGAAATAATCTACGTCTGC	4678	False	NA	NA	False	AATAAA	-10	NA	14078904	14136201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_14079148_14107211_14107297_14120627_14120704_14120788_14120885_14122199_14122347_14133356_14133448_14133789_14133983_14135834_14135930_14136035
transcript_30236.known	chr2	-	2897	11	FSM	ENSMUSG00000026707.16	ENSMUST00000028034.15	2897	11	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	8.53287759199674	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAATTTTGAAAAATATCAT	978	False	NA	NA	False	NA	NA	NA	15054091	14999941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_15001358_15002977_15003104_15014220_15014370_15017950_15018096_15034839_15034960_15041085_15041168_15042884_15043039_15044543_15044654_15047037_15047118_15051958_15052115_15053732
transcript_30238.known	chr2	+	3608	6	FSM	ENSMUSG00000017418.15	ENSMUST00000239125.2	3608	6	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_3	13.7346277707115	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAATCTTCTCAACATGTTA	4741	False	NA	NA	False	AAGAAA	-15	NA	15060133	15083977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_15060386_15072949_15073011_15074630_15074779_15077934_15078019_15079772_15079925_15081066
transcript_30242.known	chr2	+	2146	14	FSM	ENSMUSG00000026748.14	ENSMUST00000114702.2	2146	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_10	16.8132801836092	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGACTATCAGCAGAAGGAT	511	False	NA	NA	False	NA	NA	NA	16361927	16756668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_16362049_16516832_16517045_16552927_16553075_16570146_16570217_16643397_16643521_16654919_16655039_16665584_16665685_16674304_16674401_16674633_16674716_16708127_16708189_16716892_16717041_16718480_16718520_16734063_16734225_16756001
transcript_30250.nic	chr2	+	994	8	ISM	ENSMUSG00000026743.17	ENSMUST00000114680.9	3543	23	-117	84741	-66	0	5prime_fragment	FALSE	canonical	3	88	junction_1	45.5299856340493	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGATCCATCACTTA	4576	False	NA	NA	False	NA	NA	NA	18069380	18131040	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_18069676_18069845_18070006_18075935_18076016_18106268_18106324_18114592_18114703_18127055_18127160_18128529_18128624_18130944
transcript_30252.known	chr2	+	825	7	FSM	ENSMUSG00000026743.17	ENSMUST00000154041.8	825	7	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	71.9639184283037	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTGGATCCATCACTTA	4690	False	NA	NA	False	NA	NA	NA	18069494	18131040	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_18069676_18069845_18070006_18075935_18076016_18114592_18114703_18127055_18127160_18128529_18128624_18130944
transcript_30254.known	chr2	+	935	8	FSM	ENSMUSG00000051154.12	ENSMUST00000061158.5	935	8	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_2	22.7909756576714	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTTTGGAGTTTGTGTG	60	False	NA	37	True	AATAAA	-31	NA	18677233	18681042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_18677415_18678705_18678818_18678935_18679000_18679091_18679127_18679466_18679528_18679619_18679677_18679760_18679821_18680677
transcript_3026.nic	chr1	-	1954	12	NIC	ENSMUSG00000062729.13	novel	1821	13	NA	NA	-1	0	intron_retention	FALSE	canonical	3	37	junction_8	30.7939030135824	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTCTTTACTATTCAT	5188	False	NA	-15	True	AGTAAA	-16	NA	171108761	171104564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_171104773_171104858_171104902_171105019_171105170_171105266_171105378_171105454_171105574_171105707_171105769_171106696_171106888_171107003_171107149_171107442_171107576_171107713_171108097_171108247_171108343_171108446
transcript_30261.known	chr2	+	1196	5	FSM	ENSMUSG00000023094.15	ENSMUST00000023856.9	1196	5	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	15.0996688705415	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTTGTCTCAGTCTGT	4784	False	NA	19	True	AATAAA	-20	NA	19376446	19399787	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_19376591_19382972_19383074_19388051_19388129_19398018_19398167_19399061
transcript_30266.nnic	chr2	+	987	4	NNC	ENSMUSG00000036617.18	novel	3074	4	NA	NA	-215	5912	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	82.3097132110718	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGAGATGCCTTGGTTGT	4581	False	NA	NA	False	NA	NA	NA	20524386	20673039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_20524739_20534769_20535054_20666708_20666908_20672887
transcript_30269.known	chr2	+	3074	4	FSM	ENSMUSG00000036617.18	ENSMUST00000146613.8	3074	4	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_1	5.31245915016974	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACTGTCAGGTAGGCCT	4816	False	NA	NA	False	AATACA	-18	NA	20524621	20716689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_20524739_20534769_20535054_20666708_20666908_20714215
transcript_30270.known	chr2	+	3899	3	FSM	ENSMUSG00000048550.18	ENSMUST00000054591.10	3899	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	4.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAAAAGAAAAAAATTATCC	4784	False	NA	NA	False	NA	NA	NA	21210534	21219820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_21210657_21214695_21214853_21216200
transcript_30272.known	chr2	-	3023	11	FSM	ENSMUSG00000058835.15	ENSMUST00000091394.13	3023	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_8	121.126545397778	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGATATTGTTAAAGTAT	NA	False	NA	-2	True	AATAAA	-21	NA	22930149	22830375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843621_22847029_22847131_22850718_22850860_22852412_22852514_22853225_22853241_22861094_22861272_22884534_22884703_22929960
transcript_30273.known	chr2	-	3067	11	FSM	ENSMUSG00000058835.15	ENSMUST00000123948.8	3067	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_8	119.179906024464	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGACCTTTAATCCTAT	NA	False	NA	54	True	TTTAAA	-19	NA	22930134	22830319	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22853225_22853241_22861094_22861272_22884534_22884703_22929960
transcript_30274.known	chr2	-	2239	11	FSM	ENSMUSG00000058835.15	ENSMUST00000178908.2	2239	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	121.89257565578	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGATTTTGGCCTCTCCT	NA	False	NA	-5	True	TATAAA	-31	NA	22930231	22831244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861038_22861054_22861094_22861272_22884534_22884703_22929960
transcript_30275.known	chr2	-	3403	10	FSM	ENSMUSG00000058835.15	ENSMUST00000140164.8	3403	10	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	62.0443887296789	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTCTTAAAATGATTTT	NA	False	NA	-9	True	AATAAA	-25	NA	22930253	22830084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843621_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
transcript_30276.known	chr2	-	3360	10	FSM	ENSMUSG00000058835.15	ENSMUST00000126112.8	3360	10	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	54.5400521080666	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTTCTTAAAATGATTTT	NA	False	NA	-9	True	AATAAA	-25	NA	22930207	22830084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_22832060_22836587_22836774_22840195_22840283_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
transcript_30278.known	chr2	-	3027	10	FSM	ENSMUSG00000058835.15	ENSMUST00000078977.14	3027	10	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_7	139.976188451227	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATTTGGATATTGTTAA	NA	False	NA	-7	True	AATAAA	-16	NA	22930242	22830380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_22832060_22836587_22836774_22843446_22843624_22847029_22847131_22850718_22850860_22852412_22852514_22853225_22853241_22861094_22861272_22884534_22884703_22929960
transcript_30283.known	chr2	-	3303	9	FSM	ENSMUSG00000058835.15	ENSMUST00000149719.8	3303	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	106.193220122567	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGGTTGAAATTATTTC	NA	False	NA	-22	True	AATAAA	-12	NA	22930253	22830097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_22832060_22836587_22836774_22843446_22843621_22847029_22847131_22850718_22850860_22852412_22852514_22861094_22861272_22884534_22884703_22929960
transcript_30293.nic	chr2	+	1746	12	NIC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	-39	0	intron_retention	FALSE	canonical	3	18	junction_1	98.1149604012836	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	5569	False	NA	19	True	AATAAA	-21	NA	22785494	22830278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_22785775_22789930_22789996_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22819755_22819870_22825570_22825652_22829834
transcript_30298.known	chr2	+	1642	11	FSM	ENSMUSG00000026784.15	ENSMUST00000053729.14	1642	11	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_4	19.641792178923	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	5608	False	NA	19	True	AATAAA	-21	NA	22785533	22830278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22819755_22819870_22825570_22825652_22829834
transcript_30300.nnic	chr2	+	1569	10	NIC	ENSMUSG00000026784.15	novel	1642	11	NA	NA	-41	0	intron_retention	FALSE	canonical	3	31	junction_8	77.9635875755748	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGTCTTTGTTTCAC	5567	False	NA	19	True	AATAAA	-21	NA	22785492	22830278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426_22805537_22819551_22819633_22825570_22825652_22829834
transcript_30303.known	chr2	+	1538	7	FSM	ENSMUSG00000026784.15	ENSMUST00000152170.8	1538	7	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_4	18.6696426199206	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTCTGGTCCTCTTTAC	5681	False	NA	NA	False	ATTAAA	-17	NA	22785606	22806225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_22785775_22791292_22791358_22791764_22791886_22796806_22796938_22802611_22802754_22805213_22805326_22805426
transcript_30305.known	chr2	+	3630	13	FSM	ENSMUSG00000026781.18	ENSMUST00000028121.15	3630	13	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	26.6993289553627	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTAACTGTATTGACTGTG	NA	False	NA	NA	False	AATAAA	-20	NA	22958179	23004525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_22958299_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989573_22989777_23000256_23000299_23000665_23000776_23002516
transcript_30308.known	chr2	+	1986	13	FSM	ENSMUSG00000026781.18	ENSMUST00000227809.2	1986	13	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	25.6850583457041	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAGAAAGAATGCAAAAAC	NA	False	NA	NA	False	ATTAAA	-2	NA	22958212	23002917	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_22958299_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989576_22989777_23000256_23000299_23000665_23000776_23002516
transcript_3031.nic	chr1	+	2118	9	NIC	ENSMUSG00000052423.16	novel	2098	9	NA	NA	-14	0	combination_of_known_junctions	FALSE	non_canonical	1	46	junction_1	80.4478674359986	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTTGTGATTTCTGC	NA	False	NA	14	True	AATAAA	-14	NA	171097883	171104467	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_171097985_171098152_171098260_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
transcript_30310.known	chr2	+	3630	13	FSM	ENSMUSG00000026781.18	ENSMUST00000114529.10	3630	13	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	26.0302975182553	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATTTTAGAAATCGACAGCT	NA	False	NA	NA	False	ATTAAA	-11	NA	22959079	23004427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_22959297_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989573_22989777_23000256_23000299_23000665_23000776_23002516
transcript_30312.known	chr2	+	3725	13	FSM	ENSMUSG00000026781.18	ENSMUST00000114526.9	3725	13	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	24.981103969912	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTAACTGTATTGACTGTG	NA	False	NA	NA	False	AATAAA	-20	NA	22959079	23004525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_22959297_22959462_22959632_22965501_22965623_22968155_22968229_22970350_22970466_22977496_22977632_22979602_22979801_22980487_22980595_22984300_22984530_22989576_22989777_23000256_23000299_23000665_23000776_23002516
transcript_30315.known	chr2	-	5590	12	FSM	ENSMUSG00000026779.7	ENSMUST00000028119.7	5590	12	0	0	0	0	multi-exon	TRUE	canonical	3	112	junction_2	17.5310821963508	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGTGGCTGTGAAGAA	NA	False	NA	NA	False	NA	NA	NA	23046036	23005617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_23008605_23010468_23010571_23010904_23011019_23021691_23021831_23022636_23023744_23026882_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045690
transcript_30320.known	chr2	-	1201	7	FSM	ENSMUSG00000026779.7	ENSMUST00000136207.2	1201	7	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_4	13.2759180473518	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTAGTTGTGATACTGG	NA	False	NA	NA	False	TATAAA	-16	NA	23045909	23026695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_23027056_23029919_23030068_23030510_23030618_23035375_23035465_23036053_23036194_23040999_23041138_23045690
transcript_30322.known	chr2	+	4707	19	FSM	ENSMUSG00000026775.10	ENSMUST00000028117.4	4707	19	0	0	0	0	multi-exon	TRUE	canonical	3	665	junction_5	65.7463325738674	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACATTCCAACTGAAGCAT	7073	False	NA	24	True	AATAAA	-26	NA	23046380	23089272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_23046744_23050203_23050336_23052512_23052676_23054510_23054610_23058296_23058407_23062967_23063119_23065180_23065265_23071037_23071121_23073224_23073316_23076189_23076343_23076877_23077011_23077791_23077855_23081024_23081138_23082418_23082575_23083099_23083252_23084528_23084656_23084746_23084821_23085333_23085421_23086899
transcript_30334.known	chr2	-	2560	12	FSM	ENSMUSG00000026976.16	ENSMUST00000028355.11	2560	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.899954085146515	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGTTTTATCTTGGGA	NA	False	NA	NA	False	AATAAA	-14	NA	24365611	24310571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_24311637_24312980_24313068_24319538_24319641_24325774_24325982_24326459_24326581_24330651_24330828_24331089_24331216_24331603_24331693_24332951_24333150_24334577_24334744_24365084_24365193_24365496
transcript_30336.nic	chr2	-	1412	3	ISM	ENSMUSG00000004113.19	ENSMUST00000100348.10	7182	47	154665	0	-848	0	3prime_fragment	FALSE	canonical	2	6	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGGTTCTCTCTATCCTC	NA	False	NA	NA	False	AATAAA	-17	NA	24498394	24496386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_24497113_24497453_24497699_24497953
transcript_3034.nic	chr1	+	1997	9	NIC	ENSMUSG00000052423.16	novel	2098	9	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_3	91.0706284978862	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGCTTGTGATTTCTGC	NA	False	NA	14	True	AATAAA	-14	NA	171097883	171104467	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_171097985_171098152_171098260_171098772_171098944_171099397_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
transcript_30343.known	chr2	-	1574	8	FSM	ENSMUSG00000026972.16	ENSMUST00000102935.10	1574	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	27.9642629082191	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCGAGTGGCTGGCCT	9406	False	NA	-31	True	AATAAA	-17	NA	24825175	24815363	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_24815689_24815767_24816207_24816283_24816458_24816556_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
transcript_30348.nic	chr2	-	1514	7	NIC	ENSMUSG00000026972.16	novel	1666	8	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_6	24.8445164976097	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCGAGTGGCTGGCCT	9358	False	NA	-31	True	AATAAA	-17	NA	24825223	24815363	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_24815689_24815767_24816207_24816283_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24825039
transcript_30351.nic	chr2	-	1789	7	NIC	ENSMUSG00000026972.16	novel	1666	8	NA	NA	-46	0	intron_retention	FALSE	canonical	3	75	junction_2	4.41273409829124	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGCGAGTGGCTGGCCT	9271	False	NA	-31	True	AATAAA	-17	NA	24825310	24815363	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_24815689_24815767_24816461_24816556_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
transcript_30359.known	chr2	-	1590	7	FSM	ENSMUSG00000026972.16	ENSMUST00000155953.8	1590	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	30.4940795711051	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGGGCGAGTGGCTGG	9424	False	NA	-34	True	AATAAA	-14	NA	24825157	24815366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_24815689_24815767_24816461_24816599_24816740_24816889_24817045_24817137_24817189_24817740_24817852_24825039
transcript_30360.nic	chr2	+	1838	9	NIC	ENSMUSG00000026975.11	novel	1666	9	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	33.0924368247489	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTGTATGCATCTGT	NA	False	NA	34	True	ATTAAA	-37	NA	24852422	24862173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_24852823_24853034_24853169_24853467_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_30363.known	chr2	+	1666	9	FSM	ENSMUSG00000026975.11	ENSMUST00000028351.9	1666	9	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	22.9945645751338	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTATGCATCTGTCT	NA	False	NA	36	True	ATTAAA	-39	NA	24852411	24862175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_24852638_24853034_24853169_24853467_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_30364.nnic	chr2	+	1339	9	NNC	ENSMUSG00000026975.11	novel	1666	9	NA	NA	0	-24	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	40.470475349321	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTAATTTTAGAAAT	NA	False	NA	10	True	ATTAAA	-13	NA	24852433	24862149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_24852638_24853034_24853169_24853467_24853556_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861813
transcript_30365.nnic	chr2	+	1753	8	NIC	ENSMUSG00000026975.11	novel	1554	8	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_2	44.442120120628	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTGTATGCATCTGT	NA	False	NA	34	True	ATTAAA	-37	NA	24852422	24862173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_24852823_24853034_24853169_24855568_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_30368.known	chr2	+	1554	8	FSM	ENSMUSG00000026975.11	ENSMUST00000126909.8	1554	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	38.473950901346	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTGTATGCATCTGT	NA	False	NA	34	True	ATTAAA	-37	NA	24852433	24862173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_24852638_24853034_24853169_24855571_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_3037.known	chr1	+	1998	8	FSM	ENSMUSG00000052423.16	ENSMUST00000064272.10	1998	8	0	0	0	0	multi-exon	FALSE	non_canonical	1	74	junction_2	53.1005976368228	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCTTGTGATTTCTGCA	NA	False	NA	15	True	AATAAA	-15	NA	171097897	171104468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171097985_171098772_171098944_171099276_171099572_171100090_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
transcript_30373.nic	chr2	+	1423	7	NIC	ENSMUSG00000026975.11	novel	1554	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	41.9076365356005	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTATGTGTATGCATCTGT	NA	False	NA	34	True	ATTAAA	-37	NA	24852433	24862173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_24852638_24855568_24855667_24856513_24856687_24858896_24858967_24859061_24859128_24859517_24859691_24861534
transcript_30374.known	chr2	-	776	2	FSM	ENSMUSG00000036850.5	ENSMUST00000045604.4	776	2	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	0	260	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGTGTTTTGAATCAAGT	NA	False	NA	-3	True	ATTAAA	-21	NA	24865110	24864128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_24864694_24864899
transcript_30375.known	chr2	+	483	1	FSM	ENSMUSG00000084383.2	ENSMUST00000121309.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1461	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	24875995	24876478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_24876000_24876500
transcript_30376.known	chr2	-	3255	2	FSM	ENSMUSG00000059555.7	ENSMUST00000081869.7	3255	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACCCACCTTCTTTTCTT	8262	False	NA	NA	False	AATAAA	-17	NA	25086898	25082977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25085938_25086603
transcript_30378.known	chr2	-	2637	13	FSM	ENSMUSG00000013465.20	ENSMUST00000059849.15	2637	13	0	0	0	0	multi-exon	TRUE	canonical	3	539	junction_7	54.5501807716732	297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGAGGAATCTGTTTGTC	NA	False	NA	NA	False	AATAAA	-20	NA	25101501	25089723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25090479_25090670_25090780_25091056_25091199_25093152_25093260_25093359_25093503_25093898_25093995_25094209_25094313_25095138_25095252_25096171_25096358_25099865_25100097_25100449_25100550_25100720_25100885_25101113
transcript_30388.known	chr2	-	1234	6	FSM	ENSMUSG00000036770.12	ENSMUST00000114363.2	1234	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.4	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTGGCTTTCTCTGTTC	NA	False	NA	NA	False	NA	NA	NA	25104649	25102773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25103185_25103300_25103596_25103842_25103932_25104019_25104155_25104247_25104409_25104506
transcript_30390.known	chr2	-	1598	4	FSM	ENSMUSG00000036752.5	ENSMUST00000043584.5	1598	4	0	0	0	0	multi-exon	FALSE	canonical	3	1343	junction_2	25.8499946271217	2120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCGCCTGTCCAATTCCT	NA	False	NA	-24	True	ATTAAA	-18	NA	25114714	25112171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25113381_25113945_25114057_25114135_25114245_25114545
transcript_30391.nic	chr2	-	1177	5	ISM	ENSMUSG00000006469.14	ENSMUST00000006638.8	2183	13	2993	0	1675	0	3prime_fragment	FALSE	canonical	2	3	junction_2	0.866025403784439	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGAGTGTTGGCTTTCTCTC	NA	False	NA	NA	False	AATAAA	-15	NA	25121383	25118909	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_25119528_25120584_25120710_25120784_25120902_25120987_25121156_25121234
transcript_30395.known	chr2	-	2336	14	FSM	ENSMUSG00000006471.19	ENSMUST00000114349.9	2336	14	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_3	18.4333117547694	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTAGCCGCTCACTTCTC	NA	False	NA	-6	True	CATAAA	-16	NA	25145421	25137240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25137867_25137971_25138067_25138133_25138253_25138347_25138498_25138643_25138759_25138916_25139025_25139111_25139333_25139416_25139539_25139805_25140016_25140107_25140210_25140291_25140391_25141732_25141831_25144875_25144954_25145228
transcript_30401.known	chr2	+	854	1	FSM	ENSMUSG00000078201.6	ENSMUST00000104998.5	854	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGCTCTGAATTGCCAG	NA	False	NA	6	True	ATTAAA	-16	NA	25145450	25146304	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_25145400_25146300
transcript_30403.known	chr2	-	862	3	FSM	ENSMUSG00000026966.7	ENSMUST00000028342.7	862	3	0	0	0	0	multi-exon	FALSE	canonical	3	707	junction_2	68	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCTGCTAGCTACCA	NA	False	NA	-6	True	AATAAA	-16	NA	25162428	25161050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25161594_25161940_25162141_25162309
transcript_30404.known	chr2	-	845	3	FSM	ENSMUSG00000026966.7	ENSMUST00000133697.2	845	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	398.5	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTCTGCTAGCTACCA	NA	False	NA	-6	True	AATAAA	-16	NA	25162422	25161050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25161594_25161940_25162141_25162320
transcript_30407.known	chr2	-	1006	2	FSM	ENSMUSG00000026966.7	ENSMUST00000141470.2	1006	2	0	0	0	0	multi-exon	FALSE	canonical	3	843	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATCCCCATGGCCTCTGG	NA	False	NA	-53	True	AAGAAA	-32	NA	25162450	25161097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25161594_25161940
transcript_30408.known	chr2	+	3004	13	FSM	ENSMUSG00000026965.13	ENSMUST00000028341.11	3004	13	0	0	0	0	multi-exon	TRUE	canonical	3	410	junction_2	48.8355374929182	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGTGTGTGGCATCTGTG	NA	False	NA	18	True	ATTAAA	-19	NA	25162489	25175927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_25162690_25162926_25163550_25163811_25163945_25164677_25164853_25166327_25166448_25167647_25167766_25168335_25168518_25169183_25169326_25170138_25170215_25170294_25170499_25174573_25174704_25174948_25175185_25175262
transcript_30409.known	chr2	+	3755	13	FSM	ENSMUSG00000036646.14	ENSMUST00000042390.5	3755	13	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_8	34.4394597647653	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGCAGTGTTACTTT	3965	False	NA	33	True	ATTAAA	-21	NA	25222740	25242224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_25222989_25223446_25223556_25224388_25224505_25228124_25228280_25231618_25231729_25233235_25233422_25234979_25235129_25235417_25235607_25238047_25238239_25238582_25238704_25239181_25239380_25239462_25239595_25240373
transcript_3041.known	chr1	+	2805	6	FSM	ENSMUSG00000052423.16	ENSMUST00000129985.4	2805	6	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	25.5029410068721	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTGATTTCTGCAT	NA	False	NA	16	True	AATAAA	-16	NA	171097943	171104469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171097985_171098772_171100327_171101522_171101714_171101835_171101959_171103454_171103560_171103678
transcript_30412.known	chr2	-	1682	13	FSM	ENSMUSG00000026958.14	ENSMUST00000028332.8	1682	13	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_10	27.0014145719977	233	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTCTAGTAGGATCCATG	9001	False	NA	-17	True	AATAAA	-17	NA	25246371	25242301	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25242579_25242697_25242769_25243164_25243230_25243371_25243529_25243619_25243739_25244244_25244306_25244479_25244647_25244752_25244835_25244904_25245041_25245569_25245734_25245825_25245966_25246040_25246155_25246242
transcript_3043.known	chr1	-	2219	13	FSM	ENSMUSG00000053483.16	ENSMUST00000065941.12	2219	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	116.920794652714	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCATGTTTGTATTTGTG	NA	False	NA	NA	False	AATAAA	-20	NA	171115564	171109518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113114_171113175_171113922_171114544_171115334
transcript_3044.nic	chr1	-	1966	13	NIC	ENSMUSG00000053483.16	novel	2219	13	NA	NA	-12	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_3	150.066721272017	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGTTCATGTTTGTATT	NA	False	NA	NA	False	AATAAA	-16	NA	171115576	171109522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113114_171113175_171114183_171114544_171115334
transcript_30441.known	chr2	-	3349	9	FSM	ENSMUSG00000026956.16	ENSMUST00000102925.4	3349	9	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_3	36.5288841192829	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGGAGTCCACGTGGTGA	NA	False	NA	NA	False	GATAAA	-18	NA	25255694	25249900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25251752_25252082_25252150_25252674_25252861_25253255_25253397_25253817_25254012_25254112_25254286_25254523_25254700_25254892_25255098_25255338
transcript_30451.known	chr2	+	3121	7	FSM	ENSMUSG00000026955.14	ENSMUST00000028329.13	3121	7	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_3	10.077477638554	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTAGGCCCTATTTAAAT	6657	False	NA	NA	False	AATAGA	-14	NA	25262332	25268225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_25263011_25263427_25263530_25264963_25265077_25265696_25265844_25265979_25266088_25266175_25266287_25266363
transcript_30458.nic	chr2	+	2337	6	NIC	ENSMUSG00000026955.14	novel	3121	7	NA	NA	-6	0	intron_retention	FALSE	canonical	3	105	junction_2	6.41872261435249	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCTGTATTTCTCATAA	6651	False	NA	6	True	AGTAAA	-15	NA	25262326	25266815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_25263011_25263427_25263530_25264963_25265844_25265979_25266088_25266175_25266287_25266363
transcript_30460.known	chr2	+	1600	6	FSM	ENSMUSG00000026955.14	ENSMUST00000114293.9	1600	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	40.9536323175369	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGCTGTATTTCTCATAA	6666	False	NA	6	True	AGTAAA	-15	NA	25262341	25266815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_25263011_25264963_25265077_25265696_25265844_25265979_25266088_25266175_25266287_25266363
transcript_30466.known	chr2	+	1935	9	FSM	ENSMUSG00000015085.9	ENSMUST00000028328.3	1935	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.69096865730859	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGTGTCCATAGGGTGG	NA	False	NA	NA	False	AATAAA	-19	NA	25285885	25291333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_25286102_25287407_25287526_25288012_25288164_25288302_25288463_25288543_25288772_25289293_25289549_25289628_25289749_25290575_25290711_25290781
transcript_30468.known	chr2	+	1485	9	FSM	ENSMUSG00000015094.17	ENSMUST00000071442.12	1485	9	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	4.24264068711928	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTTCTGGGTTCACTGA	3126	False	NA	12	True	ATTAAA	-20	NA	25293082	25299506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_25293378_25296226_25296374_25297607_25297749_25297852_25298027_25298125_25298193_25298271_25298360_25298618_25298699_25298916_25299014_25299110
transcript_3047.nnic	chr1	-	2167	12	NIC	ENSMUSG00000053483.16	novel	2219	13	NA	NA	-12	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_3	156.020077114485	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGTTCATGTTTGTATT	NA	False	NA	NA	False	AATAAA	-16	NA	171115576	171109522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112310_171112499_171112612_171112827_171112949_171113922_171114544_171115334
transcript_30471.known	chr2	-	981	7	FSM	ENSMUSG00000047617.12	ENSMUST00000114261.9	981	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_6	3.94405318873308	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAGTTGTGAAGATTGGC	5236	False	NA	-4	True	AATAAA	-32	NA	25351106	25349493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25349714_25349786_25349872_25350020_25350087_25350178_25350370_25350456_25350507_25350666_25350728_25350798
transcript_30473.known	chr2	-	917	6	FSM	ENSMUSG00000047617.12	ENSMUST00000125710.8	917	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	2.82842712474619	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCTCCGTCAAATAAACT	5322	False	NA	-53	True	NA	NA	NA	25351020	25349542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25349714_25349786_25349872_25350020_25350087_25350178_25350370_25350456_25350507_25350666
transcript_30477.known	chr2	+	808	6	FSM	ENSMUSG00000015093.16	ENSMUST00000114265.9	808	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.46969384566991	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTGTGTCCTGAACGTC	572	False	NA	NA	False	CATAAA	-16	NA	25346849	25348788	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_25346927_25347672_25347783_25347860_25347987_25348126_25348234_25348315_25348492_25348576
transcript_30478.known	chr2	-	896	6	FSM	ENSMUSG00000047617.12	ENSMUST00000135915.8	896	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	6.01331855134916	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGAGTTGTGAAGATTG	5258	False	NA	-6	True	AATAAA	-30	NA	25351084	25349495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25349714_25349786_25349872_25350020_25350087_25350178_25350370_25350456_25350507_25350798
transcript_30479.known	chr2	-	775	7	FSM	ENSMUSG00000015090.14	ENSMUST00000114259.3	775	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.71558280160133	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCTTTTGTCTGTCTG	5892	False	NA	1	True	AATAAA	-19	NA	25359761	25356720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25356844_25357331_25357358_25357829_25357932_25358083_25358201_25358844_25358922_25358999_25359140_25359571
transcript_30480.known	chr2	-	901	7	FSM	ENSMUSG00000015090.14	ENSMUST00000015234.13	901	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	3.09569593683445	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCTTTTGTCTGTCTG	5799	False	NA	1	True	AATAAA	-19	NA	25359854	25356720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25356844_25357298_25357358_25357829_25357932_25358083_25358201_25358844_25358922_25358999_25359140_25359571
transcript_30481.known	chr2	-	645	6	FSM	ENSMUSG00000015090.14	ENSMUST00000137417.2	645	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.57681974534503	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCTTTGCTTTTGTCTGT	6484	False	NA	-2	True	AATAAA	-16	NA	25359169	25356723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25356844_25357298_25357358_25357829_25357932_25358083_25358201_25358844_25358922_25358999
transcript_30483.known	chr2	+	2388	9	FSM	ENSMUSG00000015095.13	ENSMUST00000015239.10	2388	9	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	35.5176012703561	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCCATCTAGTCTGTTTG	NA	False	NA	16	True	AATAAA	-16	NA	25390761	25395483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_25390899_25391947_25392164_25392412_25392571_25392882_25393058_25393136_25393286_25393448_25393879_25394191_25394340_25394428_25394642_25394721
transcript_30487.known	chr2	-	1150	7	FSM	ENSMUSG00000015083.12	ENSMUST00000040042.11	1150	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	2.38047614284762	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTTTGTCGTTTTTTGTC	NA	False	NA	-1	True	ATTAAA	-19	NA	25390625	25388662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25388836_25388916_25388956_25389025_25389128_25389409_25389518_25389600_25389672_25389850_25389988_25390105
transcript_30489.known	chr2	-	868	6	FSM	ENSMUSG00000015083.12	ENSMUST00000149062.8	868	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	1.72046505340853	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGGTCTTTTGTCGTTTT	NA	False	NA	-6	True	ATTAAA	-14	NA	25390267	25388667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25388956_25389025_25389128_25389409_25389518_25389600_25389672_25389850_25389988_25390105
transcript_30490.known	chr2	-	2151	11	FSM	ENSMUSG00000026942.14	ENSMUST00000114234.2	2151	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	38.6141165896619	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTGAGTGGTGTTCATC	NA	False	NA	-18	True	ATTAAA	-13	NA	25436922	25408877	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25409641_25410339_25410489_25414351_25414530_25414878_25415161_25417485_25417561_25418243_25418319_25420298_25420461_25426687_25426787_25427082_25427162_25428856_25429097_25436873
transcript_30491.known	chr2	-	3044	11	FSM	ENSMUSG00000026942.14	ENSMUST00000028311.13	3044	11	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_10	20.6164982477626	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTCTTGGTTGTATTTGAC	NA	False	NA	NA	False	NA	NA	NA	25436952	25407993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25409641_25410339_25410489_25414351_25414530_25414878_25415161_25417485_25417561_25418243_25418319_25420298_25420461_25426687_25426787_25427082_25427162_25428877_25429097_25436873
transcript_30494.known	chr2	+	722	5	FSM	ENSMUSG00000015092.10	ENSMUST00000015236.4	722	5	0	0	0	0	multi-exon	FALSE	canonical	3	2396	junction_4	232.166965781095	1410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCTCCTGGATTTTTCCT	NA	False	NA	17	True	NA	NA	NA	25447858	25452094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_25448042_25450162_25450215_25450551_25450713_25450980_25451075_25451862
transcript_30499.known	chr2	+	765	4	FSM	ENSMUSG00000015092.10	ENSMUST00000153008.8	765	4	0	0	0	0	multi-exon	FALSE	canonical	3	2578	junction_3	170.755836080515	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGTCTTCTCATCTTTT	NA	False	NA	NA	False	NA	NA	NA	25447882	25451373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_25448042_25450162_25450215_25450551_25450713_25450980
transcript_3050.nnic	chr1	-	1707	10	NNC	ENSMUSG00000053483.16	novel	2219	13	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	171.193270318868	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGATGTTCATGTTTGTATT	NA	False	NA	NA	False	AATAAA	-16	NA	171115576	171109522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_171109877_171110070_171110186_171110268_171110377_171110588_171110668_171110927_171111015_171111210_171111315_171111534_171111600_171112150_171112173_171114012_171114544_171115334
transcript_30501.known	chr2	+	910	3	FSM	ENSMUSG00000015092.10	ENSMUST00000134689.8	910	3	0	0	0	0	multi-exon	FALSE	canonical	3	2865	junction_1	60	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGATCCCTAGGGGGG	NA	False	NA	NA	False	NA	NA	NA	25447908	25451276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_25448042_25450162_25450215_25450551
transcript_30502.known	chr2	-	937	3	FSM	ENSMUSG00000036504.7	ENSMUST00000039156.7	937	3	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_2	2.5	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGACTTGTGTCTTGC	5200	False	NA	-8	True	ATTAAA	-20	NA	25465236	25463441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25463712_25464199_25464325_25464694
transcript_30504.known	chr2	-	656	3	FSM	ENSMUSG00000036504.7	ENSMUST00000147096.2	656	3	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	365.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCACCTGCCAGGCCTTA	5546	False	NA	-80	True	GGGGCT	-34	NA	25464890	25463513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25463712_25464199_25464462_25464694
transcript_30505.known	chr2	-	3230	15	FSM	ENSMUSG00000015087.15	ENSMUST00000058137.9	3230	15	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_7	28.5093074669466	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGGTGTGTGACTCTTTT	3218	False	NA	-6	True	CATAAA	-15	NA	25498533	25473029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25474001_25474114_25474174_25474787_25474957_25475319_25475549_25475635_25475846_25476879_25477031_25477286_25477640_25478620_25478725_25482309_25482416_25482778_25482920_25486444_25486537_25488156_25488210_25491362_25491411_25492432_25492568_25498124
transcript_30508.known	chr2	-	795	5	FSM	ENSMUSG00000026939.13	ENSMUST00000142087.2	795	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	9.85837207656518	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGTTCTGTGGGTGAAGC	NA	False	NA	31	True	ATTAAA	-14	NA	25512017	25510078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25510543_25511077_25511186_25511386_25511471_25511619_25511687_25511945
transcript_30511.known	chr2	-	583	4	FSM	ENSMUSG00000026939.13	ENSMUST00000128149.2	583	4	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_2	21.7460085737335	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCACCAAATCCAGGACCTG	NA	False	NA	NA	False	NA	NA	NA	25511792	25510338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25510543_25511077_25511186_25511372_25511471_25511619
transcript_30512.known	chr2	-	975	4	FSM	ENSMUSG00000026939.13	ENSMUST00000150165.8	975	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	9.10433352249844	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGAGCTCTGAAGCAAT	NA	False	NA	-6	True	AATAAA	-18	NA	25511975	25510115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25510543_25511077_25511186_25511386_25511471_25511619
transcript_30513.nic	chr2	-	1045	4	NIC	ENSMUSG00000026939.13	novel	975	4	NA	NA	0	0	intron_retention	FALSE	canonical	0	0	junction_3	19.4307888557196	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTGAGCTCTGAAGCAAT	NA	False	NA	-6	True	AATAAA	-18	NA	25511975	25510115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_25510543_25511077_25511186_25511386_25511541_25511619
transcript_30517.known	chr2	-	2190	14	FSM	ENSMUSG00000015087.15	ENSMUST00000146012.8	2190	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	89.6567418599781	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAAGAGGTACCTACTCTG	3274	False	NA	NA	False	NA	NA	NA	25498477	25474122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25474174_25474787_25474957_25475319_25475549_25475635_25475846_25476879_25477031_25477286_25477640_25478620_25478725_25482309_25482416_25482778_25482920_25486444_25486537_25488156_25488205_25491362_25491411_25492432_25492568_25498124
transcript_30518.known	chr2	+	983	1	FSM	ENSMUSG00000049086.9	ENSMUST00000061483.9	983	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGATTCTTTTTTATTGTT	NA	False	NA	27	True	TATAAA	-23	NA	25596750	25597733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_25596800_25597700
transcript_30519.known	chr2	-	1289	8	FSM	ENSMUSG00000059625.7	ENSMUST00000076989.7	1289	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.18529407725405	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCTGGCTTTTGAGTAA	NA	False	NA	NA	False	ATTAAA	-32	NA	25737260	25733006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25733372_25733935_25734013_25734497_25734685_25735273_25735408_25735664_25735790_25736220_25736369_25736729_25736865_25737142
transcript_3052.known	chr1	-	2706	2	FSM	ENSMUSG00000053483.16	ENSMUST00000153164.2	2706	2	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	171115532	171112035	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_171114544_171115334
transcript_30522.known	chr2	-	1852	10	FSM	ENSMUSG00000036352.17	ENSMUST00000036509.14	1852	10	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_2	68.2632884002073	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTGTGTTACTTCATGGC	NA	False	NA	-3	True	AATAAA	-20	NA	25911759	25888554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_25889080_25895337_25895477_25896538_25896626_25897730_25897966_25898872_25898982_25899172_25899276_25900533_25900642_25904903_25904978_25906307_25906429_25911408
transcript_30525.known	chr2	+	977	4	FSM	ENSMUSG00000026930.16	ENSMUST00000147873.8	977	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	7.25718035235908	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCCTGCCCTAGGCCGGG	NA	False	NA	NA	False	NA	NA	NA	26232300	26237287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_26232443_26234613_26234771_26235162_26235372_26236818
transcript_30526.known	chr2	-	2916	3	FSM	ENSMUSG00000075467.5	ENSMUST00000028295.9	2916	3	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_2	24.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGCGGGGCGGCCACCAT	NA	False	NA	NA	False	AATAAA	-18	NA	26242122	26238132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_26240571_26241346_26241487_26241784
transcript_30527.known	chr2	-	2766	2	FSM	ENSMUSG00000075467.5	ENSMUST00000125848.2	2766	2	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGCGGGGCGGCCACCAT	NA	False	NA	NA	False	AATAAA	-18	NA	26242112	26238132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_26240571_26241784
transcript_30528.known	chr2	-	1880	13	FSM	ENSMUSG00000026928.15	ENSMUST00000028294.7	1880	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	11.0789465002569	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGTTGGTTGGATATGCA	NA	False	NA	NA	False	AATAAA	-17	NA	26250930	26242198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_26242424_26242496_26242574_26242952_26243027_26244368_26244418_26244841_26244884_26245344_26245537_26246769_26246896_26247196_26247341_26247476_26247657_26247722_26248028_26248825_26248964_26249375_26249572_26250798
transcript_30529.known	chr2	-	1955	8	FSM	ENSMUSG00000026927.18	ENSMUST00000077983.13	1955	8	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_7	82.5556089640708	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGACTGTCTTGTCATTT	NA	False	NA	-3	True	AATAAA	-13	NA	26279309	26272813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_26273707_26274693_26274834_26275094_26275158_26275509_26275622_26276001_26276076_26276915_26277324_26277567_26277684_26279160
transcript_3053.known	chr1	-	822	7	FSM	ENSMUSG00000062963.11	ENSMUST00000144576.8	822	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	228.930423685645	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATAGGCGGTTTGTATCC	7366	False	NA	NA	False	AATGAA	-32	NA	171122514	171116266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117427_171117521_171117721_171117790_171122206_171122401_171122493
transcript_30530.known	chr2	+	3135	13	FSM	ENSMUSG00000026926.15	ENSMUST00000076431.13	3135	13	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_8	105.114619979018	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGATGCCCCTAGGTGT	644	False	NA	19	True	AATAAA	-16	NA	26279350	26287134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529_26283593_26285036_26285182_26285430
transcript_30536.known	chr2	+	1638	11	FSM	ENSMUSG00000026926.15	ENSMUST00000114093.2	1638	11	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_8	100.774054200474	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTGCCTGGCTGTCTTTT	653	False	NA	NA	False	NA	NA	NA	26279359	26283953	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_26279445_26279947_26280151_26280242_26280323_26280506_26280590_26281095_26281191_26281877_26281979_26282423_26282688_26282917_26283011_26283097_26283217_26283308_26283400_26283529
transcript_3054.known	chr1	-	1007	7	FSM	ENSMUSG00000062963.11	ENSMUST00000080001.9	1007	7	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_6	130.826539101718	397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGGTTCTCATTGATG	7283	False	NA	0	True	AATAAA	-18	NA	171122597	171116135	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_171116545_171116743_171116835_171117090_171117168_171117456_171117521_171117721_171117790_171122206_171122401_171122493
transcript_30544.nic	chr2	+	1139	9	NIC	ENSMUSG00000026921.21	novel	1163	9	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	104.879692982007	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTGTCAATGGGGGAA	165	False	NA	12	True	AATAAA	-12	NA	26476634	26482693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482262_26482429
transcript_30545.known	chr2	+	1163	9	FSM	ENSMUSG00000026921.21	ENSMUST00000239075.2	1163	9	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	46.4239970273995	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGTTGTCAATGGGGGAA	172	False	NA	12	True	AATAAA	-12	NA	26476641	26482693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_26476694_26479056_26479182_26479341_26479459_26480391_26480508_26480668_26480765_26480910_26481076_26481675_26481741_26482129_26482293_26482429
transcript_30564.nic	chr2	-	1386	6	NIC	ENSMUSG00000026922.14	novel	1273	6	NA	NA	64	0	combination_of_known_junctions	FALSE	canonical	3	216	junction_5	206.37577377202	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAGAGTTCTTTCTCC	9951	False	NA	1	True	TATAAA	-45	NA	26493874	26483068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26493673
transcript_30566.known	chr2	-	1489	6	FSM	ENSMUSG00000026922.14	ENSMUST00000028286.12	1489	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	292.487674954006	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAGAGTTCTTTCTCC	9481	False	NA	1	True	TATAAA	-45	NA	26494344	26483068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494040
transcript_30567.known	chr2	-	1273	6	FSM	ENSMUSG00000026922.14	ENSMUST00000131940.8	1273	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	210.357219985433	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTAGAGTTCTTTCTCC	9602	False	NA	1	True	TATAAA	-45	NA	26494223	26483068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_26483775_26484791_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494135
transcript_30570.known	chr2	-	1145	5	FSM	ENSMUSG00000026922.14	ENSMUST00000140386.8	1145	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	320.696897396903	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAACATTGCATCATTTCA	9396	False	NA	NA	False	NA	NA	NA	26494429	26484514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_26484865_26486091_26486188_26486302_26486479_26487215_26487350_26494040
transcript_30571.nnic	chr2	-	1702	7	NNC	ENSMUSG00000015787.16	novel	1811	6	NA	NA	34	-206	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	1.7950549357115	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGGAAGTTTTTAGTTTC	NA	False	NA	NA	False	AATAAA	-16	NA	26746776	26732720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_26733887_26735967_26736103_26736585_26736622_26738262_26738320_26738932_26739003_26746433_26746565_26746669
transcript_30572.known	chr2	-	2971	5	FSM	ENSMUSG00000036160.14	ENSMUST00000047632.14	2971	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	26.2154534578367	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTGTTTTTATTTGTGT	NA	False	NA	NA	False	TTTAAA	-3	NA	26792891	26780446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_26782738_26782878_26783080_26789348_26789438_26789740_26789945_26792705
transcript_30573.known	chr2	-	973	4	FSM	ENSMUSG00000015776.13	ENSMUST00000015920.12	973	4	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	17.7951304200522	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTCCTGACTGCCAGTG	NA	False	NA	NA	False	NA	NA	NA	26800581	26795599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_26796006_26798104_26798314_26799004_26799086_26800304
transcript_30575.known	chr2	-	3506	3	FSM	ENSMUSG00000015776.13	ENSMUST00000102899.10	3506	3	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	2.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTCTGTCTTTCTTGAT	NA	False	NA	-4	True	AATAAA	-18	NA	26800689	26795273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_26798314_26799004_26799086_26800304
transcript_30579.known	chr2	+	914	8	FSM	ENSMUSG00000062647.17	ENSMUST00000102898.5	914	8	0	0	0	0	multi-exon	FALSE	canonical	3	2861	junction_1	795.089880684786	825	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTGGTTATTTGGGT	NA	False	NA	6	True	AATATA	-19	NA	26800775	26803330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_26800843_26801017_26801139_26801433_26801584_26802030_26802172_26802377_26802458_26802682_26802814_26802999_26803070_26803176
transcript_30588.nnic	chr2	-	1120	9	NNC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_4	108.788498932562	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	-5	True	AATAAA	-19	NA	26806525	26803394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804224_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
transcript_30591.known	chr2	-	1173	9	FSM	ENSMUSG00000015790.17	ENSMUST00000015934.13	1173	9	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_4	27.1834048639974	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	-5	True	AATAAA	-19	NA	26806542	26803394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
transcript_30593.known	chr2	-	1151	9	FSM	ENSMUSG00000015790.17	ENSMUST00000167661.7	1151	9	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_7	110.059571937201	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	-5	True	AATAAA	-19	NA	26806480	26803394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_26803518_26803588_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805782_26805966_26806019_26806268
transcript_30596.nic	chr2	-	1230	8	NIC	ENSMUSG00000015790.17	novel	1173	9	NA	NA	16	0	intron_retention	FALSE	canonical	3	328	junction_3	29.0460577254084	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGCTCAGTCTGAAACCGT	NA	False	NA	-3	True	AATAAA	-21	NA	26806526	26803392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_26803671_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
transcript_3060.nic	chr1	-	1690	7	NIC	ENSMUSG00000013997.11	novel	1335	7	NA	NA	2	0	intron_retention	FALSE	canonical	3	10	junction_6	48.6646689087679	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCTGGACATGTCTTT	901	False	NA	-10	True	AATATA	-8	NA	171173191	171169811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171172758
transcript_30606.nic	chr2	+	1330	6	NIC	ENSMUSG00000014873.16	novel	1203	6	NA	NA	-20	0	combination_of_known_junctions	TRUE	canonical	3	27	junction_5	113.91821627817	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAAACTTTTGCCAAACCA	NA	False	NA	20	True	CATAAA	-44	NA	26806358	26810178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_26806516_26806716_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809614
transcript_30608.known	chr2	+	1203	6	FSM	ENSMUSG00000014873.16	ENSMUST00000015017.8	1203	6	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_5	33.4388995034227	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATATGTGTATCATTGTT	NA	False	NA	37	True	CATAAA	-32	NA	26806378	26810195	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_26806516_26806716_26806872_26807439_26807544_26808884_26809068_26809203_26809371_26809738
transcript_30611.nic	chr2	+	1156	6	NIC	ENSMUSG00000014873.16	novel	1203	6	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_3	115.994827470883	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGCCAAACCAATATGT	NA	False	NA	26	True	CATAAA	-21	NA	26806358	26810184	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_26806516_26806716_26806872_26807439_26807544_26808940_26809068_26809203_26809371_26809738
transcript_30612.known	chr2	-	3281	6	FSM	ENSMUSG00000014867.10	ENSMUST00000015011.10	3281	6	0	0	0	0	multi-exon	TRUE	canonical	3	778	junction_1	38.262252939418	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGTGGTCCTATATGG	NA	False	NA	-2	True	AATAAA	-18	NA	26823940	26810051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_26812184_26814356_26814544_26814964_26815009_26815619_26815697_26816780_26816968_26823286
transcript_30619.known	chr2	+	2519	5	FSM	ENSMUSG00000014873.16	ENSMUST00000126947.8	2519	5	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_4	33.741665637606	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTTGCCAAACCAATATGT	NA	False	NA	26	True	CATAAA	-21	NA	26806392	26810184	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_26806516_26806716_26806872_26807439_26809068_26809203_26809371_26809738
transcript_3062.known	chr1	-	3041	7	FSM	ENSMUSG00000013997.11	ENSMUST00000111289.8	3041	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_6	46.1904270986484	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTCTTGACTTGGTTCA	878	False	NA	2	True	ATTAAA	-23	NA	171173214	171168138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173103
transcript_30621.known	chr2	-	975	9	FSM	ENSMUSG00000015790.17	ENSMUST00000183520.8	975	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	113.594055192162	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGGCTCAGTCTGAAACC	NA	False	NA	-5	True	AATAAA	-19	NA	26806312	26803394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_26803518_26803588_26803703_26803924_26804088_26804186_26804260_26804718_26804908_26805443_26805527_26805607_26805742_26805966_26806019_26806268
transcript_30622.known	chr2	-	2278	8	FSM	ENSMUSG00000052406.15	ENSMUST00000114020.10	2278	8	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_5	23.9344342497821	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGAGTGTGTGGAAGTT	NA	False	NA	-9	True	AATAAA	-11	NA	26854398	26843577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_26844609_26845506_26845582_26846300_26846376_26848490_26848580_26850235_26850430_26850614_26850753_26852394_26852736_26854063
transcript_30623.nnic	chr2	-	2069	7	NIC	ENSMUSG00000052406.15	novel	2281	8	NA	NA	18	0	combination_of_known_splicesites	FALSE	canonical	3	43	junction_4	59.1629106789042	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGTGTGTGGAAGTTCAT	NA	False	NA	-6	True	AATAAA	-14	NA	26854380	26843574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_26844609_26845506_26845582_26846300_26846376_26848490_26848580_26850614_26850753_26852394_26852736_26854063
transcript_3063.known	chr1	-	1335	7	FSM	ENSMUSG00000013997.11	ENSMUST00000111295.8	1335	7	0	0	0	0	multi-exon	TRUE	canonical	3	74	junction_6	27.0025718939676	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGTCTGGACATGTCTTT	879	False	NA	-10	True	AATATA	-8	NA	171173213	171169811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_171170366_171171005_171171132_171171261_171171396_171171631_171171736_171171855_171172108_171172481_171172569_171173135
transcript_30631.known	chr2	+	2194	3	FSM	ENSMUSG00000015488.15	ENSMUST00000114004.8	2194	3	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	8	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGTTTCCCATTCAGATT	NA	False	NA	NA	False	ATTAAA	-18	NA	26899937	26907436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_26900118_26904104_26904178_26905495
transcript_30632.known	chr2	+	1898	1	FSM	ENSMUSG00000109946.2	ENSMUST00000209765.2	1898	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTTTCTCATTTTTCTT	NA	False	NA	3	True	AATAAA	-15	NA	27332335	27334233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_27332300_27334200
transcript_30633.known	chr2	-	5272	12	FSM	ENSMUSG00000026918.17	ENSMUST00000077737.13	5272	12	0	0	0	0	multi-exon	TRUE	canonical	3	192	junction_7	30.2258714644446	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTGTGTGGTGCTCT	NA	False	NA	-6	True	AATAAA	-14	NA	27365698	27335590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_27338593_27339212_27339339_27340268_27340562_27342844_27343087_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900_27354206_27365588
transcript_30635.known	chr2	-	5289	13	FSM	ENSMUSG00000026918.17	ENSMUST00000113941.9	5289	13	0	0	0	0	multi-exon	FALSE	canonical	2	24	junction_5	87.0507514805779	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATAATAAAAAGGGAAAGAAG	NA	False	NA	5	True	NA	NA	NA	27365685	27335611	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_27338593_27339212_27339339_27340268_27340562_27342844_27343087_27343411_27343463_27344324_27344517_27346920_27347050_27349468_27349841_27351540_27351756_27352432_27352581_27353466_27353605_27353900_27354206_27365588
transcript_30637.known	chr2	+	2890	14	FSM	ENSMUSG00000026917.16	ENSMUST00000113952.10	2890	14	0	0	0	0	multi-exon	FALSE	canonical	3	1324	junction_4	114.959164347413	289	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTCCATATAAGTTTG	NA	False	NA	33	True	AATAAA	-19	NA	27405168	27426547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_27405293_27408640_27408805_27409360_27409470_27409754_27409829_27410338_27410429_27410584_27410675_27410839_27410924_27415117_27415174_27418285_27418333_27421650_27421727_27423004_27423039_27423348_27423424_27423779_27423868_27424768
transcript_3064.known	chr1	+	2563	6	FSM	ENSMUSG00000013973.13	ENSMUST00000111300.8	2563	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	69.9674209900579	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCACTTTTCTGAAACTGA	1192	False	NA	NA	False	AATAAA	-17	NA	171156712	171169899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171157095_171158820_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
transcript_30642.nnic	chr2	-	964	4	NNC	ENSMUSG00000026831.17	novel	812	3	NA	NA	-194	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	63.8957484240279	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCCACGCCTCTTATT	NA	False	NA	0	True	ATTAAA	-19	NA	28356538	28352012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_28352447_28355148_28355228_28356045_28356125_28356166
transcript_30643.known	chr2	-	812	3	FSM	ENSMUSG00000026831.17	ENSMUST00000086370.11	812	3	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	7	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGCCACGCCTCTTATT	NA	False	NA	0	True	ATTAAA	-19	NA	28356344	28352012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_28352447_28355148_28355228_28356045
transcript_30644.nnic	chr2	+	2179	5	NNC	ENSMUSG00000035772.12	novel	2429	4	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	280.38321989734	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTGGTGTCAGACTCTC	NA	False	NA	15	True	NA	NA	NA	28358073	28361177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_28358155_28358254_28358372_28358832_28358963_28359232_28359341_28359434
transcript_30646.known	chr2	+	2080	4	FSM	ENSMUSG00000035772.12	ENSMUST00000038600.4	2080	4	0	0	0	0	multi-exon	FALSE	canonical	3	508	junction_2	49.4592986426438	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTCTCTAGAACTTTGAAC	NA	False	NA	28	True	NA	NA	NA	28358077	28361190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_28358155_28358254_28358372_28358832_28358963_28359434
transcript_30649.known	chr2	+	2504	3	FSM	ENSMUSG00000035772.12	ENSMUST00000146332.2	2504	3	0	0	0	0	multi-exon	FALSE	canonical	3	604	junction_2	8	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCTGGTGTCAGACTCTC	NA	False	NA	15	True	NA	NA	NA	28358101	28361177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_28358155_28358254_28358963_28359434
transcript_30650.known	chr2	-	2739	12	FSM	ENSMUSG00000026816.15	ENSMUST00000028157.9	2739	12	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_7	20.5992858738452	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGGTGTTTGATGCCCT	NA	False	NA	-49	True	AATAAA	-22	NA	28473291	28456322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_28457190_28457619_28457797_28458496_28458640_28459303_28459387_28460430_28460529_28460624_28460706_28461124_28461240_28462207_28462313_28463388_28463585_28467887_28468087_28469529_28469750_28472836
transcript_30651.known	chr2	-	2667	12	FSM	ENSMUSG00000026816.15	ENSMUST00000113889.9	2667	12	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_2	52.8098100077803	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGGTGTTTGATGCCCT	NA	False	NA	-49	True	AATAAA	-22	NA	28473201	28456322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_28457190_28457619_28457815_28458496_28458640_28459303_28459387_28460430_28460529_28460624_28460706_28461124_28461240_28462207_28462313_28463388_28463585_28467887_28468087_28469529_28469750_28472836
transcript_30652.known	chr2	+	7674	23	FSM	ENSMUSG00000026812.17	ENSMUST00000028155.12	7674	23	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	11.5017066645932	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCGCAGTGTTGATGGAG	3452	False	NA	8	True	AATAAA	-16	NA	28531248	28581179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_28531303_28542180_28542244_28548616_28548803_28551593_28551698_28552472_28552626_28553511_28553657_28555019_28555175_28555567_28555642_28560880_28561057_28561777_28561894_28562404_28562517_28562796_28562916_28565199_28565261_28565674_28565780_28566011_28566571_28568173_28568218_28568963_28569131_28570034_28570218_28571202_28571314_28571923_28572047_28575734_28575923_28575996_28576159_28576665
transcript_30653.known	chr2	+	7702	23	FSM	ENSMUSG00000026812.17	ENSMUST00000113869.8	7702	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	14.4709026944897	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCCGCAGTGTTGATGGAG	3456	False	NA	8	True	AATAAA	-16	NA	28531252	28581179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_28531332_28542180_28542244_28548616_28548803_28551593_28551698_28552472_28552626_28553511_28553657_28555019_28555175_28555567_28555642_28560880_28561057_28561777_28561894_28562404_28562517_28562793_28562916_28565199_28565261_28565674_28565780_28566011_28566571_28568173_28568218_28568963_28569131_28570034_28570218_28571202_28571314_28571923_28572047_28575734_28575923_28575996_28576159_28576665
transcript_30659.known	chr2	-	699	5	FSM	ENSMUSG00000026809.16	ENSMUST00000124840.2	699	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	1.22474487139159	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCCTGGCTTGGTTTC	NA	False	NA	NA	False	AATAAA	-14	NA	28589695	28582095	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_28582165_28582923_28583072_28583635_28583839_28585918_28586096_28589593
transcript_30661.known	chr2	-	6941	5	FSM	ENSMUSG00000035666.15	ENSMUST00000037117.6	6941	5	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_4	18.8215302247187	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAAGGGGATTTTTTTTT	NA	False	NA	-5	True	AATAAA	-19	NA	28730298	28712316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_28716810_28717489_28717579_28720513_28720645_28723561_28725386_28729894
transcript_30663.known	chr2	+	3271	20	FSM	ENSMUSG00000026806.16	ENSMUST00000113853.3	3271	20	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_10	16.137738156191	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGAGGACTCAGCAGAGAAA	NA	False	NA	18	True	AATAAA	-19	NA	28730470	28795583	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_28730873_28734849_28735107_28735209_28735286_28736005_28736050_28737452_28737524_28738297_28738363_28744782_28744828_28746206_28746249_28747131_28747197_28748747_28748868_28748999_28749107_28749880_28750090_28750727_28750905_28753727_28753788_28764142_28764194_28765701_28765842_28771154_28771237_28776902_28777015_28782390_28782554_28794600
transcript_30666.known	chr2	-	1042	6	FSM	ENSMUSG00000079502.9	ENSMUST00000157048.4	1042	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	3.07245829914744	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGCTGTCTGTATAAAGG	NA	False	NA	NA	False	NA	NA	NA	28945078	28845381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_28845637_28846006_28846109_28852643_28852750_28874307_28874534_28875813_28875914_28944825
transcript_30669.known	chr2	+	4160	12	FSM	ENSMUSG00000026803.18	ENSMUST00000100237.4	4160	12	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	12.4628373193903	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTGTGAAATGACTTGAA	NA	False	NA	21	True	AATAAA	-23	NA	28950273	28977668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_28950316_28954630_28955921_28957014_28957242_28959903_28960090_28961309_28961389_28963900_28964032_28964585_28964821_28969400_28969491_28971023_28971090_28973544_28973631_28974648_28974827_28976118
transcript_30673.nic	chr2	+	1721	4	ISM	ENSMUSG00000043535.14	ENSMUST00000061578.9	10970	26	121	51310	121	712	5prime_fragment	FALSE	canonical	3	157	junction_1	22.939534045447	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTAATACTTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	29015124	29021173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_29015562_29015863_29015976_29016885_29017076_29020191
transcript_30674.nnic	chr2	+	1332	4	NNC	ENSMUSG00000043535.14	novel	10970	26	NA	NA	157	712	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	94.7886537982732	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTAATACTTTGTTTTCA	NA	False	NA	NA	False	NA	NA	NA	29015160	29021173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_29015209_29015863_29015976_29016885_29017076_29020191
transcript_30675.known	chr2	+	1254	8	FSM	ENSMUSG00000026799.16	ENSMUST00000028139.11	1254	8	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_3	14.0393034305954	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGTGTTCTGCTTCTT	NA	False	NA	32	True	AATAAA	-20	NA	29236830	29414805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_29237060_29239857_29240003_29303399_29303531_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
transcript_3068.nic	chr1	+	1636	6	NIC	ENSMUSG00000013973.13	novel	849	5	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	78.1756995491566	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGAGAAGCTGTGGC	1636	False	NA	18	True	NA	NA	NA	171157156	171169250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_171157261_171158820_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
transcript_30680.nnic	chr2	+	1020	6	NNC	ENSMUSG00000026799.16	novel	1254	8	NA	NA	-35281	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	71.1910106684826	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGTGTTCTGCTTCTT	4419	False	NA	32	True	AATAAA	-20	NA	29351241	29414805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_29351513_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
transcript_30681.nnic	chr2	+	865	6	NNC	ENSMUSG00000026799.16	novel	1254	8	NA	NA	-34404	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	71.9844427636972	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCTGTGTTCTGCTTCTT	5296	False	NA	32	True	AATAAA	-20	NA	29352118	29414805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_29352235_29361304_29361399_29390230_29390339_29399434_29399477_29412785_29412864_29414378
transcript_30686.nnic	chr2	-	2397	10	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	-17	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	69.5021093915612	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGCATGTGATGTTTTA	NA	False	NA	-6	True	TATAAA	-23	NA	29677700	29666121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_29666232_29666386_29666544_29666585_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_3069.nic	chr1	+	2285	6	NIC	ENSMUSG00000013973.13	novel	849	5	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_1	78.1756995491566	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCACTTTTCTGAAACTGA	1636	False	NA	NA	False	AATAAA	-17	NA	171157156	171169899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_171157261_171158820_171158854_171165819_171166209_171166390_171166499_171167760_171167908_171168395
transcript_30692.nnic	chr2	-	2335	9	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	72.7169168763363	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGCATGTGATGTTTTA	NA	False	NA	-6	True	TATAAA	-23	NA	29677700	29666121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_29666232_29666386_29666544_29666585_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29674964_29675040_29676487_29676620_29677514
transcript_30693.nnic	chr2	-	2260	9	NNC	ENSMUSG00000039826.14	novel	3408	8	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	81.6692070183126	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGCATGTGATGTTTTA	NA	False	NA	-6	True	TATAAA	-23	NA	29677700	29666121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_29666232_29666386_29666544_29666585_29667969_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_30697.known	chr2	-	3408	8	FSM	ENSMUSG00000039826.14	ENSMUST00000048044.12	3408	8	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_2	23.9267589931935	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGGCATGTGATGTTTTA	NA	False	NA	-6	True	TATAAA	-23	NA	29678514	29666121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_30699.known	chr2	+	860	7	FSM	ENSMUSG00000026798.11	ENSMUST00000176348.8	860	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	47.2666784203088	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGCCTTTCTCTCCACAC	NA	False	NA	NA	False	AAAACA	-43	NA	29678231	29686614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_29678370_29678448_29678581_29679914_29680012_29680468_29680543_29685392_29685523_29685947_29686042_29686419
transcript_30700.known	chr2	+	1991	7	FSM	ENSMUSG00000026798.11	ENSMUST00000028137.10	1991	7	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	15.3884877605162	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAACTAAAATGAAGCCGG	NA	False	NA	NA	False	NA	NA	NA	29678270	29687755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_29678370_29678448_29678581_29679914_29680012_29680468_29680572_29685392_29685523_29685947_29686042_29686419
transcript_30701.known	chr2	-	3930	7	FSM	ENSMUSG00000039826.14	ENSMUST00000156846.8	3930	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_4	39.677869566464	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGACTGGTGTTTTATTTT	NA	False	NA	NA	False	NA	NA	NA	29677672	29664695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_29667969_29668743_29668881_29669834_29669908_29672131_29672214_29674964_29675040_29676487_29676620_29677514
transcript_30703.known	chr2	-	744	7	FSM	ENSMUSG00000039826.14	ENSMUST00000177467.8	744	7	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	60.8041025662651	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGCGGAACTGCAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	29677634	29667768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_29667969_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_30704.nic	chr2	-	1051	7	ISM	ENSMUSG00000039826.14	ENSMUST00000048044.12	3408	8	814	2318	-17	166	5prime_fragment	FALSE	canonical	3	126	junction_1	24.0791518861349	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAAGAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	29677700	29668439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_29668881_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_30705.known	chr2	-	806	6	FSM	ENSMUSG00000039826.14	ENSMUST00000177133.8	806	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	43.1879612855249	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTAAGAAACAGAGGCTGGG	NA	False	NA	NA	False	NA	NA	NA	29677683	29668605	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_29668881_29669834_29669908_29672131_29672214_29674964_29675040_29676487_29676620_29677514
transcript_30706.known	chr2	-	1035	7	FSM	ENSMUSG00000039826.14	ENSMUST00000113807.10	1035	7	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	64.3810272259356	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGGTCTCTTCTTCTTC	NA	False	NA	NA	False	NA	NA	NA	29677660	29651235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_29651701_29669834_29669908_29672131_29672214_29673323_29673386_29674964_29675040_29676487_29676620_29677514
transcript_30708.known	chr2	+	681	6	FSM	ENSMUSG00000069020.10	ENSMUST00000147325.2	681	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	146.238708965855	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGGTGTTCCTGTGCTGTG	NA	False	NA	NA	False	NA	NA	NA	29717372	29733433	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_29717448_29722703_29722775_29731413_29731496_29732473_29732559_29732732_29732782_29733114
transcript_3071.known	chr1	+	1618	5	FSM	ENSMUSG00000013973.13	ENSMUST00000064950.11	1618	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	61.0184398358398	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAGAGAAGCTGTGGC	1455	False	NA	18	True	NA	NA	NA	171156975	171169250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171157095_171165819_171166209_171166390_171166499_171167760_171167908_171168395
transcript_30711.known	chr2	+	2196	5	FSM	ENSMUSG00000069020.10	ENSMUST00000091142.4	2196	5	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	41.2158949921023	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTGTTGTTGTTGTT	NA	False	NA	14	True	AATAAA	-24	NA	29717353	29735014	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_29717448_29722703_29722775_29731413_29731496_29732732_29732782_29733114
transcript_30717.known	chr2	+	497	4	FSM	ENSMUSG00000069020.10	ENSMUST00000156944.8	497	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	149.455307329278	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCAGCCGCCTGAGTCCA	NA	False	NA	NA	False	NA	NA	NA	29717353	29733386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_29717448_29731413_29731496_29732732_29732782_29733114
transcript_30719.known	chr2	+	986	2	FSM	ENSMUSG00000069020.10	ENSMUST00000130542.2	986	2	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	29717406	29723648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_29717448_29722703
transcript_30721.nic	chr2	+	3790	21	NIC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	561	junction_4	193.045616370846	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7183	False	NA	14	True	AATAAA	-14	NA	29779786	29821758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
transcript_30722.known	chr2	+	3807	21	FSM	ENSMUSG00000026790.20	ENSMUST00000113759.9	3807	21	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	298.874656001475	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCAGACTCCTTTGATTT	7225	False	NA	13	True	AATAAA	-13	NA	29779828	29821757	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802577_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
transcript_30724.nic	chr2	+	3693	20	NIC	ENSMUSG00000026790.20	novel	3959	22	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	268.155761574078	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGACTCCTTTGATTTC	7183	False	NA	14	True	AATAAA	-14	NA	29779786	29821758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_29779934_29782197_29782289_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224_29812384_29813550_29813652_29815951_29816115_29816715_29816842_29820481
transcript_30729.nic	chr2	+	2291	17	NIC	ENSMUSG00000026790.20	novel	2305	17	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	561	junction_4	172.1394783308	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7183	False	NA	13	True	AATAAA	-17	NA	29779786	29812551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
transcript_30730.known	chr2	+	2305	17	FSM	ENSMUSG00000026790.20	ENSMUST00000113755.8	2305	17	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_4	168.994082736645	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7226	False	NA	13	True	AATAAA	-17	NA	29779829	29812551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_29779934_29782197_29782289_29783012_29783167_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
transcript_30731.nic	chr2	+	2254	17	ISM	ENSMUSG00000026790.20	ENSMUST00000113757.8	3082	21	-20	8556	-10	0	5prime_fragment	FALSE	canonical	3	101	junction_2	297.263712625255	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7183	False	NA	13	True	AATAAA	-17	NA	29779786	29812551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_29779934_29782197_29782289_29783049_29783167_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
transcript_30734.nic	chr2	+	2137	16	NIC	ENSMUSG00000026790.20	novel	2364	17	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	233	junction_2	278.954476572791	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7183	False	NA	13	True	AATAAA	-17	NA	29779786	29812551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_29779934_29782197_29782289_29783455_29783525_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
transcript_30735.known	chr2	+	2249	16	FSM	ENSMUSG00000026790.20	ENSMUST00000113767.8	2249	16	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	277.041625432393	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCGTGTTGCACAAAGT	7128	False	NA	13	True	AATAAA	-17	NA	29779731	29812551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_29779934_29782197_29782289_29783455_29783582_29791088_29791260_29792192_29792354_29793332_29793463_29793987_29794120_29802580_29802653_29804242_29804315_29804405_29804523_29804745_29804932_29805219_29805330_29807621_29807758_29810786_29810898_29811015_29811121_29812224
transcript_30736.nic	chr2	+	439	2	ISM	ENSMUSG00000026790.20	ENSMUST00000153216.8	828	5	-50	9016	-10	-100	5prime_fragment	FALSE	canonical	3	1240	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATAAAAGCATGAGAGAG	7183	False	NA	NA	False	NA	NA	NA	29779786	29782489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_29779934_29782197
transcript_3074.known	chr1	+	849	5	FSM	ENSMUSG00000013973.13	ENSMUST00000129116.8	849	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	84.8038177206663	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTCAAGTCCCGGGACCT	1657	False	NA	NA	False	NA	NA	NA	171157177	171168517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171157261_171165819_171166209_171166390_171166499_171167760_171167908_171168395
transcript_30741.known	chr2	+	4030	16	FSM	ENSMUSG00000019715.15	ENSMUST00000019859.9	4030	16	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_9	44.6713430387859	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTGGTGCTGCATGCAGGT	NA	False	NA	NA	False	AATAAA	-13	NA	29825437	29850383	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_29825611_29826021_29826250_29828506_29828618_29829146_29829296_29829494_29829556_29830093_29830349_29832549_29832779_29833736_29833850_29834000_29834071_29838901_29839045_29839167_29839359_29840613_29840744_29842566_29842672_29845617_29845701_29847761_29847826_29848458
transcript_30751.known	chr2	+	860	3	FSM	ENSMUSG00000019715.15	ENSMUST00000154490.8	860	3	0	0	0	0	multi-exon	FALSE	canonical	3	530	junction_2	57.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGATAGGAAGACAAAAAA	NA	False	NA	NA	False	AATAAA	-41	NA	29825439	29828967	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_29825611_29826021_29826250_29828506
transcript_30754.nnic	chr2	-	1768	9	NNC	ENSMUSG00000039715.9	novel	1814	9	NA	NA	-26	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_5	58.4549773329868	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAGAGCCCCAAGGAGCA	NA	False	NA	0	True	NA	NA	NA	29938919	29921557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_29921985_29922084_29922243_29922413_29922647_29922761_29922930_29923285_29923324_29923817_29923976_29924774_29924885_29928186_29928439_29938695
transcript_30756.known	chr2	-	1814	9	FSM	ENSMUSG00000039715.9	ENSMUST00000113711.3	1814	9	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_3	11.9973955507018	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAGAGCCCCAAGGAGCA	NA	False	NA	0	True	NA	NA	NA	29938893	29921557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_29921985_29922084_29922243_29922413_29922647_29922761_29922930_29923285_29923396_29923817_29923976_29924774_29924885_29928186_29928439_29938695
transcript_30766.known	chr2	+	2824	8	FSM	ENSMUSG00000054766.14	ENSMUST00000102866.10	2824	8	0	0	0	0	multi-exon	FALSE	canonical	3	11761	junction_1	1825.6496299752	1431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTCATTCTCCTTGTT	NA	False	NA	19	True	AATAAA	-24	NA	29951864	29962589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_29952293_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
transcript_3077.known	chr1	+	885	4	FSM	ENSMUSG00000006412.11	ENSMUST00000006579.5	885	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	957.822994550083	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGTTAATGGCTCACTAT	NA	False	NA	NA	False	NA	NA	NA	171173297	171185970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171173355_171184097_171184187_171184272_171184397_171185355
transcript_30774.known	chr2	+	2834	8	FSM	ENSMUSG00000054766.14	ENSMUST00000067996.7	2834	8	0	0	0	0	multi-exon	FALSE	canonical	3	3891	junction_1	4471.27957761808	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGGTCATTCTCCTTGTT	NA	False	NA	19	True	AATAAA	-24	NA	29956467	29962589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_29956906_29958280_29958339_29958971_29959115_29959338_29959443_29959529_29959644_29960196_29960368_29960452_29960600_29960930
transcript_3078.known	chr1	+	1735	4	FSM	ENSMUSG00000006412.11	ENSMUST00000135941.8	1735	4	0	0	0	0	multi-exon	FALSE	canonical	3	1860	junction_3	112.860779527503	2056	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGCTCTATTTTTTGT	NA	False	NA	5	True	NA	NA	NA	171173237	171186822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171173355_171184097_171184187_171184272_171184397_171185417
transcript_3079.known	chr1	-	1558	4	FSM	ENSMUSG00000045259.5	ENSMUST00000061878.5	1558	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	1.88561808316413	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGAACTGAGGTTCCTTT	7871	False	NA	NA	False	AATAAA	-26	NA	171188366	171186013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_171186549_171187022_171187222_171187309_171187470_171187702
transcript_30803.nic	chr2	+	3064	22	NIC	ENSMUSG00000026785.15	novel	3460	21	NA	NA	-39	0	combination_of_known_junctions	TRUE	canonical	3	77	junction_7	19.7860437769826	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGGTTGTGTAGTGTCTAG	1279	False	NA	24	True	AATAAA	-26	NA	29967656	29981034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_29967812_29969545_29969775_29969937_29970084_29970586_29970699_29970767_29970896_29971064_29971249_29972827_29972975_29973052_29973163_29973250_29973395_29974702_29974779_29974861_29975025_29975194_29975292_29975371_29975440_29976448_29976513_29976643_29976736_29977036_29977214_29978531_29978595_29978707_29978785_29979850_29979994_29980079_29980188_29980342_29980424_29980534
transcript_30807.known	chr2	-	1187	5	FSM	ENSMUSG00000015335.17	ENSMUST00000081838.7	1187	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	253.22754095872	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCCATGCTGCCGTGGAC	NA	False	NA	-10	True	ATTAAA	-9	NA	29983647	29980962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_29981579_29981678_29981846_29981999_29982078_29982416_29982554_29983458
transcript_30808.known	chr2	-	1165	5	FSM	ENSMUSG00000015335.17	ENSMUST00000102865.11	1165	5	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_1	34.0917878674616	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGTGGACTCTTTCC	NA	False	NA	-3	True	ATTAAA	-16	NA	29983660	29980955	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_29981579_29981678_29981846_29981999_29982078_29982416_29982554_29983500
transcript_30811.known	chr2	-	846	4	FSM	ENSMUSG00000015335.17	ENSMUST00000137001.2	846	4	0	0	0	0	multi-exon	FALSE	canonical	3	619	junction_3	30.9443945740671	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACTTTTTCTGTGGTTGG	NA	False	NA	NA	False	NA	NA	NA	29983628	29981342	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_29981846_29981999_29982078_29982416_29982554_29983500
transcript_30812.known	chr2	+	3595	12	FSM	ENSMUSG00000039678.13	ENSMUST00000044556.12	3595	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	5.33195574495097	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCGGTGCTGTGCTGGCT	2697	False	NA	20	True	AATAAA	-19	NA	30023757	30042025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30036663_30036875_30037373_30037538_30038634_30038796_30038942_30039001_30039711
transcript_30813.nnic	chr2	+	1413	8	NNC	ENSMUSG00000039678.13	novel	3595	12	NA	NA	-2	1613	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	5.03862631101383	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGCCCCTTTGGCTAGAA	2721	False	NA	NA	False	NA	NA	NA	30023781	30034149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_30023925_30024808_30024883_30026684_30026726_30027132_30027195_30027293_30027394_30030486_30030570_30032273_30032434_30033399
transcript_30820.known	chr2	-	1805	12	FSM	ENSMUSG00000039660.17	ENSMUST00000100220.5	1805	12	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	38.9436974393538	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCTCTCTAGACCCTGAT	NA	False	NA	-28	True	AATAAA	-15	NA	30068462	30063482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067734_30067931_30067978_30068401
transcript_30822.known	chr2	-	2010	11	FSM	ENSMUSG00000039660.17	ENSMUST00000144093.8	2010	11	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_5	40.8044115262063	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTCTCTAGACCCTG	NA	False	NA	-30	True	AATAAA	-13	NA	30068471	30063484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30064198_30064933_30065082_30065198_30065302_30065725_30065825_30065930_30066004_30066373_30066505_30066626_30066677_30066750_30066841_30067334_30067495_30067604_30067978_30068401
transcript_30834.known	chr2	+	1063	3	FSM	ENSMUSG00000015337.6	ENSMUST00000015481.6	1063	3	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	35	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTCCTGTCCTGCTGCTT	NA	False	NA	34	True	NA	NA	NA	30061504	30064081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_30062079_30062853_30062964_30063702
transcript_30837.known	chr2	-	2026	14	FSM	ENSMUSG00000039648.15	ENSMUST00000113663.9	2026	14	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_13	49.789616559678	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTCAAGGCAGCTTCTCTC	NA	False	NA	-10	True	AATAAA	-18	NA	30095813	30075142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30087968_30088172_30095644
transcript_30838.known	chr2	-	1876	13	FSM	ENSMUSG00000039648.15	ENSMUST00000044038.10	1876	13	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_12	20.7811011899434	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCAGCTTCTCTCTTCCTTT	NA	False	NA	-3	True	AATAAA	-25	NA	30095859	30075135	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30075582_30075678_30075766_30076203_30076284_30076368_30076556_30076657_30076748_30076844_30076922_30077198_30077320_30077700_30077830_30078064_30078152_30078226_30078377_30081936_30082085_30084065_30084125_30095644
transcript_3084.known	chr1	+	1115	10	FSM	ENSMUSG00000026641.14	ENSMUST00000001284.13	1115	10	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	49.4805111903093	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGGGACTCAGGGGCTT	6737	False	NA	NA	False	NA	NA	NA	171238880	171245689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243368_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
transcript_30843.known	chr2	+	5710	44	FSM	ENSMUSG00000052533.15	ENSMUST00000064447.12	5710	44	0	0	0	0	multi-exon	TRUE	canonical	3	896	junction_14	107.189702087653	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTCATGTGGCAACTTTC	4848	False	NA	18	True	ATTAAA	-19	NA	30176408	30234278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_30176483_30186659_30186715_30188427_30188502_30190811_30190897_30191020_30191102_30192012_30192058_30194068_30194162_30194293_30194414_30197532_30197745_30199230_30199346_30199889_30200091_30202611_30202702_30205127_30205194_30206499_30206620_30207192_30207320_30211893_30212047_30212183_30212311_30212497_30212586_30212682_30212760_30213531_30213647_30215239_30215361_30215484_30215552_30216461_30216591_30217459_30217600_30219318_30219426_30220568_30220776_30220858_30221029_30222396_30222467_30222831_30222900_30223281_30223478_30226335_30226414_30226653_30226740_30226943_30227090_30227235_30227418_30229510_30229712_30229827_30229921_30230600_30230760_30231703_30231842_30232384_30232460_30232544_30232803_30232933_30233066_30233286_30233361_30233472_30233603_30233713
transcript_30846.known	chr2	+	1325	12	FSM	ENSMUSG00000079484.13	ENSMUST00000113645.8	1325	12	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_1	18.5338644710542	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	9917	False	NA	NA	False	AATAAA	-17	NA	30156732	30172160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_30156803_30156874_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
transcript_3085.known	chr1	+	2167	10	FSM	ENSMUSG00000026641.14	ENSMUST00000161241.8	2167	10	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	10.3363197596069	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACCCCCTGGATGTGAGG	6737	False	NA	NA	False	NA	NA	NA	171238880	171246710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171239009_171242004_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
transcript_30850.nic	chr2	+	1409	11	ISM	ENSMUSG00000079484.13	ENSMUST00000091132.13	1353	12	180	1	-12	0	3prime_fragment	FALSE	canonical	2	39	junction_2	15.9185426468631	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	9905	False	NA	NA	False	AATAAA	-17	NA	30156720	30172160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
transcript_30852.known	chr2	+	1183	10	FSM	ENSMUSG00000079484.13	ENSMUST00000127689.8	1183	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	25.1837690233655	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGGATGTTACTGTGTA	NA	False	NA	NA	False	NA	NA	NA	30156874	30172110	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30169966_30170096_30170182_30170300_30171021_30171149_30171781
transcript_30854.nic	chr2	+	1427	10	NIC	ENSMUSG00000079484.13	novel	1678	12	NA	NA	2	0	intron_retention	FALSE	canonical	2	39	junction_2	16.779617264871	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATATGTACGGGTACTT	NA	False	NA	NA	False	AATAAA	-17	NA	30156832	30172160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_30156954_30159700_30159860_30164481_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169966_30170096_30170182_30170300_30171021_30171149_30171781
transcript_30861.nic	chr2	+	720	8	NIC	ENSMUSG00000079484.13	novel	751	9	NA	NA	-41	0	intron_retention	FALSE	canonical	2	21	junction_7	22.4844617549134	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTTATGTATATGTGT	9974	False	NA	NA	False	NA	NA	NA	30156789	30169538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_30156954_30159700_30159860_30164481_30164558_30164687_30164736_30167014_30167071_30167159_30167223_30167634_30167657_30169406
transcript_30866.known	chr2	+	534	7	FSM	ENSMUSG00000052533.15	ENSMUST00000113634.3	534	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_6	456.698539033743	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTACTTGTTTCTTGTGTAT	4878	False	NA	NA	False	NA	NA	NA	30176438	30193821	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_30176483_30186659_30186715_30188427_30188502_30190811_30190897_30191020_30191102_30192012_30192058_30193671
transcript_30869.known	chr2	-	2104	1	FSM	ENSMUSG00000075419.5	ENSMUST00000100219.5	2104	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	2248	False	NA	24	True	AATAAA	-44	NA	30176346	30174242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30174200_30176300
transcript_3087.nic	chr1	+	1811	10	NIC	ENSMUSG00000026641.14	novel	2167	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	55.998015837865	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGTTTAGAGCCACAGTTG	6758	False	NA	49	True	GATAAA	-1	NA	171238901	171246311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_171239009_171241940_171242098_171243072_171243123_171243282_171243399_171243702_171243805_171244377_171244574_171244809_171244898_171245040_171245100_171245208_171245433_171245599
transcript_30870.known	chr2	-	1851	13	FSM	ENSMUSG00000026860.17	ENSMUST00000113621.10	1851	13	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_7	147.537824716993	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGATCTCAGTCCATG	NA	False	NA	-12	True	AATAAA	-14	NA	30249344	30234822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30239237_30239250_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_30873.known	chr2	-	1749	12	FSM	ENSMUSG00000026860.17	ENSMUST00000100215.11	1749	12	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	118.792269553979	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGATCTCAGTCCATGAG	NA	False	NA	-10	True	AATAAA	-16	NA	30249252	30234820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30235440_30235710_30235952_30236070_30236086_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_30878.nnic	chr2	-	1846	11	NNC	ENSMUSG00000026860.17	novel	1810	11	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	104.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGATCTCAGTCCATGAG	NA	False	NA	-10	True	AATAAA	-16	NA	30249318	30234820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_30235440_30235710_30235952_30236318_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_30879.known	chr2	-	1810	11	FSM	ENSMUSG00000026860.17	ENSMUST00000028214.15	1810	11	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_5	55.8	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGATCTCAGTCCATGAG	NA	False	NA	-10	True	AATAAA	-16	NA	30249328	30234820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30238566_30238630_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_3088.known	chr1	+	551	4	FSM	ENSMUSG00000103711.2	ENSMUST00000171362.2	551	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	12.7279220613579	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGAGTTGTATTTAATTTG	NA	False	NA	NA	False	AATAAA	-18	NA	171246600	171247920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171246704_171246905_171247029_171247505_171247669_171247758
transcript_30883.known	chr2	-	1694	10	FSM	ENSMUSG00000026860.17	ENSMUST00000113620.10	1694	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	106.475639131188	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAGGATCTCAGTCCATG	NA	False	NA	-12	True	AATAAA	-14	NA	30249277	30234822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30235440_30235710_30235952_30236364_30236466_30236622_30236713_30237092_30237117_30240299_30240393_30240595_30240730_30244864_30244994_30245272_30245415_30249154
transcript_3089.known	chr1	+	2518	10	FSM	ENSMUSG00000038235.5	ENSMUST00000043839.5	2518	10	0	0	0	0	multi-exon	FALSE	canonical	1	67	junction_8	70.6616000978966	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTATGTTTTTTTTT	NA	False	NA	23	True	ATTAAA	-23	NA	171265102	171292171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171265270_171287930_171288000_171288105_171288214_171288396_171288544_171288768_171288975_171289130_171289234_171289372_171289481_171290170_171290184_171290456_171290509_171290626
transcript_30891.known	chr2	+	3381	16	FSM	ENSMUSG00000026858.19	ENSMUST00000077977.14	3381	16	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_1	8.28385310240484	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTGTGTCTTGCTGGGT	NA	False	NA	6	True	GATAAA	-16	NA	30254244	30275533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_30254318_30257563_30257800_30258888_30259100_30260306_30260420_30261126_30261245_30261544_30261682_30265684_30265803_30266657_30266759_30267490_30267607_30267982_30268056_30268185_30268273_30271649_30271749_30271950_30272086_30272977_30273032_30273601_30273719_30273940
transcript_30893.known	chr2	-	3833	14	FSM	ENSMUSG00000026853.16	ENSMUST00000028207.13	3833	14	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_2	7.8897731722819	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTCTAGAATACATTCT	NA	False	NA	NA	False	ACTAAA	-16	NA	30305825	30291112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30292806_30293500_30293639_30294539_30294603_30294949_30295086_30295177_30295301_30295396_30295517_30296379_30296481_30296967_30297147_30297717_30297893_30298067_30298234_30298752_30298807_30299968_30300088_30302994_30303259_30305323
transcript_30895.known	chr2	+	2251	8	FSM	ENSMUSG00000026856.15	ENSMUST00000028209.15	2251	8	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_6	27.7995742149158	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTGAGCATACATTACTTG	NA	False	NA	9	True	AATAAA	-16	NA	30282265	30290541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287030_30287160_30287479_30287570_30289153
transcript_30897.known	chr2	+	1958	7	FSM	ENSMUSG00000026856.15	ENSMUST00000113612.10	1958	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	126.441027096957	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGGCTGAGCATACATTACT	NA	False	NA	7	True	AATAAA	-14	NA	30282427	30290539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_30282525_30285670_30285772_30285988_30286074_30286164_30286265_30286443_30286543_30287479_30287570_30289153
transcript_3090.known	chr1	+	1273	1	FSM	ENSMUSG00000060244.2	ENSMUST00000081527.2	1273	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAACCTTGCCTTTGATG	1407	False	NA	NA	False	AATAAA	-11	NA	171331045	171332318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171331000_171332300
transcript_30902.known	chr2	+	989	3	FSM	ENSMUSG00000039515.12	ENSMUST00000131476.8	989	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	219	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTGAGATCTGACTTT	9369	False	NA	NA	False	NA	NA	NA	30331864	30337143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_30331991_30333301_30333410_30336388
transcript_30903.known	chr2	+	2586	10	FSM	ENSMUSG00000039515.12	ENSMUST00000042055.10	2586	10	0	0	0	0	multi-exon	TRUE	canonical	3	440	junction_4	51.3501655905104	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCTGTGTGAGACATCTTT	NA	False	NA	17	True	ATTAAA	-20	NA	30306050	30337817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_30306345_30316410_30316509_30318327_30318415_30321972_30322099_30325575_30325694_30327581_30327682_30328240_30328366_30329675_30329777_30333301_30333410_30336388
transcript_30911.known	chr2	+	1192	4	FSM	ENSMUSG00000026857.10	ENSMUST00000138889.8	1192	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_2	216.499422632025	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATGCCCCAGGCAGTCT	NA	False	NA	11	True	AATAAA	-17	NA	30697952	30713029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_30698096_30709640_30709781_30710460_30710714_30712373
transcript_30914.known	chr2	+	1387	4	FSM	ENSMUSG00000026857.10	ENSMUST00000041830.10	1387	4	0	0	0	0	multi-exon	FALSE	canonical	3	480	junction_2	33.3466640010661	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTGTGTGGATGTATGT	NA	False	NA	27	True	AATAAA	-33	NA	30697837	30713045	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_30698096_30709640_30709845_30710460_30710714_30712373
transcript_30916.known	chr2	+	837	4	FSM	ENSMUSG00000026857.10	ENSMUST00000129712.3	837	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	226.212780855155	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGAGGAGCGCCAGGAGAA	NA	False	NA	NA	False	NA	NA	NA	30698124	30712564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_30698378_30709640_30709781_30710460_30710714_30712373
transcript_30920.known	chr2	-	4147	6	FSM	ENSMUSG00000039483.11	ENSMUST00000041726.4	4147	6	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_2	13.3356664625357	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTGTCTTTGTATGACA	NA	False	NA	-19	True	ATTAAA	-19	NA	30720345	30713108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30714517_30714652_30714740_30715463_30715573_30715666_30715774_30716934_30717111_30718085
transcript_30923.known	chr2	-	3647	3	FSM	ENSMUSG00000050737.14	ENSMUST00000102852.6	3647	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	10.5	182	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTGTGGTCATGATGTC	8411	False	NA	NA	False	NA	NA	NA	30793309	30779482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30782839_30790878_30790962_30793101
transcript_30926.known	chr2	+	3039	5	FSM	ENSMUSG00000026848.15	ENSMUST00000028199.12	3039	5	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_2	34.4990941910074	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTGAGCTTTTCCTTG	NA	False	NA	13	True	AATAAA	-18	NA	30842970	30849027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_30843236_30843763_30844030_30845789_30845966_30846459_30846588_30846823
transcript_30928.known	chr2	-	1401	5	FSM	ENSMUSG00000026849.19	ENSMUST00000028200.9	1401	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	220.841996685413	412	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGTGGCTTTGTGTGTCTT	NA	False	NA	-8	True	TTTAAA	-30	NA	30857945	30850638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30851210_30853486_30853615_30853705_30853882_30857101_30857368_30857685
transcript_3093.nnic	chr1	+	856	7	NNC	ENSMUSG00000015314.11	novel	5729	9	NA	NA	-5227	100	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	1.15470053837925	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTTCTGTGATTTCTTT	2023	False	NA	NA	False	AATAAA	-15	NA	171764968	171776525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_171765192_171765568_171765683_171766018_171766049_171766962_171767037_171769191_171769264_171775565_171775643_171776259
transcript_30931.known	chr2	-	1605	4	FSM	ENSMUSG00000026849.19	ENSMUST00000137694.8	1605	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	239.033238042095	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGATAACGTTTTATT	NA	False	NA	-61	True	NA	NA	NA	30857884	30850691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30851210_30853486_30853615_30853705_30853882_30857101
transcript_30934.known	chr2	-	1984	9	FSM	ENSMUSG00000026851.10	ENSMUST00000028205.10	1984	9	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_7	16.1240309786356	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30871953	30862188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30863314_30863703_30863803_30863912_30864050_30865902_30866101_30867903_30867982_30868906_30868978_30870010_30870063_30871494_30871555_30871789
transcript_30939.known	chr2	-	1064	2	FSM	ENSMUSG00000026851.10	ENSMUST00000156325.2	1064	2	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGCTGCCTCACACCT	NA	False	NA	NA	False	NA	NA	NA	30872213	30870914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30871555_30871789
transcript_3094.known	chr1	-	5698	8	FSM	ENSMUSG00000026556.16	ENSMUST00000027837.13	5698	8	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	8.90768986749708	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGGGGTTTTCTGTTGCTT	NA	False	NA	-7	True	AATAAA	-15	NA	171854862	171828526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_171832430_171833656_171833889_171835477_171835614_171836073_171836211_171837007_171837616_171840394_171840516_171840649_171840913_171854564
transcript_30940.known	chr2	+	5088	25	FSM	ENSMUSG00000026854.17	ENSMUST00000102849.11	5088	25	0	0	0	0	multi-exon	TRUE	canonical	1	7	junction_21	9.09889721645187	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTGGTGAACCTATCTA	NA	False	NA	NA	False	AATAAA	-17	NA	30872290	30913598	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_30872411_30886059_30886160_30888784_30888881_30890068_30890123_30892567_30892631_30892927_30893060_30894415_30894513_30894943_30895014_30896395_30896510_30897790_30897870_30900177_30900626_30900990_30901135_30901392_30901509_30901634_30901808_30902318_30902414_30906299_30906334_30906504_30906551_30907140_30907322_30907396_30907524_30907693_30907864_30907944_30908027_30908726_30908836_30909796_30909900_30910840_30910913_30911335
transcript_30944.nnic	chr2	+	1690	4	NNC	ENSMUSG00000026854.17	novel	622	2	NA	NA	-627	-944	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_1	12.5521135891752	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCCTAGCTTGTACTGTGA	7573	False	NA	17	True	AATAAA	-17	NA	30909203	30912650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_30909404_30909796_30909900_30910840_30910913_30911335
transcript_30947.known	chr2	-	1859	15	FSM	ENSMUSG00000075415.14	ENSMUST00000100208.9	1859	15	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_6	25.508001945768	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAACAAAAAGCATTGGAG	4974	False	NA	10	True	NA	NA	NA	31031814	30923010	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30923201_30926129_30926267_30926553_30926676_30927167_30927301_30930416_30930527_30942996_30943180_30944035_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
transcript_30948.known	chr2	-	1910	9	FSM	ENSMUSG00000075415.14	ENSMUST00000113552.9	1910	9	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_4	13.559475469206	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTTTTGTGTCTTCTT	4837	False	NA	-13	True	NA	NA	NA	31031951	30943246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_30944231_30945439_30945587_30948900_30949030_30972985_30973091_30974034_30974098_30986038_30986187_30987105_30987163_30995253_30995370_31031790
transcript_30950.known	chr2	+	6134	18	FSM	ENSMUSG00000000194.14	ENSMUST00000056433.7	6134	18	0	0	0	0	multi-exon	FALSE	canonical	1	139	junction_14	88.5769073297929	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAGTAGCCCCACCTGGC	NA	False	NA	15	True	ATTAAA	-30	NA	31042327	31108787	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_31042494_31057032_31057156_31058175_31058227_31058808_31058892_31061953_31062094_31064213_31064252_31066909_31066967_31067796_31067908_31068265_31068400_31073591_31073668_31074809_31074884_31075500_31075619_31078694_31078826_31081858_31081903_31097690_31097741_31099078_31099163_31100460_31100583_31104255
transcript_30959.known	chr2	+	1534	14	FSM	ENSMUSG00000000194.14	ENSMUST00000172422.8	1534	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	124.164616823819	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTCTTTTTTTTTTT	NA	False	NA	NA	False	ACTAAA	-16	NA	31042362	31082125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_31042494_31057032_31057154_31058173_31058227_31058808_31058892_31061953_31062094_31064213_31064252_31066909_31066967_31067796_31067908_31068265_31068400_31073591_31073668_31074809_31074884_31075500_31075619_31078694_31078826_31081858
transcript_30962.known	chr2	+	1696	16	FSM	ENSMUSG00000076441.10	ENSMUST00000102840.5	1696	16	0	0	0	0	multi-exon	FALSE	canonical	3	2348	junction_1	252.729068811291	2770	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTCTCTGCGTGTGTGCC	NA	False	NA	27	True	ATTAAA	-22	NA	31360218	31410684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_31360352_31364718_31364783_31366897_31367008_31368946_31369016_31370986_31371176_31376500_31376558_31378589_31378665_31382325_31382397_31383156_31383188_31388158_31388250_31390844_31390930_31391499_31391565_31400121_31400254_31404690_31404848_31408737_31408804_31410383
transcript_30972.known	chr2	+	3268	19	FSM	ENSMUSG00000026843.16	ENSMUST00000113482.8	3268	19	0	0	0	0	multi-exon	TRUE	canonical	3	465	junction_18	67.3624112131124	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTTTTGTTTGCTGGCC	493	False	NA	36	True	AATAAA	-37	NA	31462662	31507538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505638_31506190
transcript_30974.nnic	chr2	+	3325	19	NNC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	-2	0	intron_retention	FALSE	canonical	3	154	junction_18	127.170586318894	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTAGTCTGTTTTGTTTG	491	False	NA	30	True	AATAAA	-31	NA	31462660	31507532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509_31505699_31506190
transcript_30975.known	chr2	+	3648	18	FSM	ENSMUSG00000026843.16	ENSMUST00000055244.13	3648	18	0	0	0	0	multi-exon	FALSE	canonical	3	582	junction_10	50.5976051514182	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTAGTCTGTTTTGTTT	659	False	NA	29	True	AATAAA	-30	NA	31462828	31507531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31504722_31504795_31505509
transcript_30976.nic	chr2	+	3138	18	NIC	ENSMUSG00000026843.16	novel	3268	19	NA	NA	58	0	intron_retention	FALSE	canonical	3	48	junction_16	158.982817726256	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGTTTTGTTTGCTGGCC	551	False	NA	36	True	AATAAA	-37	NA	31462720	31507538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_31462966_31473166_31473273_31482474_31482509_31484854_31484905_31485261_31485334_31486605_31486664_31488549_31488713_31490464_31490564_31493222_31493328_31494625_31494729_31495254_31495356_31498096_31498239_31501590_31501752_31502496_31502571_31502848_31502921_31503042_31503120_31505509_31505638_31506190
transcript_30978.known	chr2	+	1686	9	FSM	ENSMUSG00000039356.16	ENSMUST00000038474.14	1686	9	0	0	0	0	multi-exon	FALSE	canonical	3	842	junction_6	46.6797600679352	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGGAGTCTCACCGCGT	NA	False	NA	NA	False	AATAAA	-16	NA	31560726	31571361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_31560874_31562483_31562586_31564526_31564573_31564706_31564797_31565850_31565917_31566679_31566749_31568462_31568640_31569862_31569992_31570501
transcript_30979.nic	chr2	+	1732	9	NIC	ENSMUSG00000039356.16	novel	1686	9	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_2	302.080054579908	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGGAGTCTCACCGCGT	NA	False	NA	NA	False	AATAAA	-16	NA	31560693	31571361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_31560874_31562483_31562599_31564526_31564573_31564706_31564797_31565850_31565917_31566679_31566749_31568462_31568640_31569862_31569992_31570501
transcript_3098.known	chr1	+	4622	33	FSM	ENSMUSG00000026553.18	ENSMUST00000135192.8	4622	33	0	0	0	0	multi-exon	FALSE	canonical	1	295	junction_11	137.915678495956	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTCCTGCTTGCCGTTTCC	2764	False	NA	10	True	AATAAA	-15	NA	171910095	171949892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811_171919922_171925240_171925351_171927234_171927335_171928945_171929082_171929776_171929860_171931675_171931827_171932752_171932820_171933683_171933760_171935878_171935962_171937352_171937493_171938055_171938142_171938243_171938383_171939431_171939595_171939690_171939838_171940592_171940783_171940900_171940997_171942311_171942401_171942589_171942714_171944492_171944583_171944753_171944864_171945581_171945660_171945819_171945889_171946407_171946545_171946753_171946941_171947024_171947136_171947443_171947606_171948796_171948992_171949266
transcript_30983.known	chr2	+	3117	6	FSM	ENSMUSG00000001864.14	ENSMUST00000001920.13	3117	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	6.46838465151849	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGTCTTTGTGTTTCTT	NA	False	NA	4	True	AATAAA	-14	NA	31840150	31863454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_31840394_31840540_31840603_31852226_31852294_31855082_31855125_31859641_31859805_31860914
transcript_30986.known	chr2	+	6605	36	FSM	ENSMUSG00000001855.16	ENSMUST00000065398.13	6605	36	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_30	27.3468425219141	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGGGTATTTATTTGGG	NA	False	NA	32	True	ATTAAA	-26	NA	31864447	31942383	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701_31869901_31870521_31870593_31872622_31872687_31873134_31873239_31878165_31878273_31879084_31879152_31880246_31880374_31881275_31881438_31884534_31884989_31886387_31886564_31887964_31888063_31892603_31892691_31892892_31893043_31894324_31894484_31896700_31896805_31900194_31900378_31901023_31901098_31901196_31901281_31907037_31907350_31908206_31908369_31910269_31910370_31915254_31915331_31916859_31916939_31920718_31920810_31921261_31921321_31923214_31924982_31928113_31928185_31929334_31929489_31932428_31932582_31937414_31937587_31941020_31941161_31941785_31941811_31942130
transcript_30987.known	chr2	+	738	4	FSM	ENSMUSG00000001855.16	ENSMUST00000130975.2	738	4	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	1.88561808316413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAAGTGGAAGGCTTTTAA	NA	False	NA	NA	False	ATTAAA	-16	NA	31864497	31869968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_31864621_31866511_31866708_31867775_31867928_31869701
transcript_30988.known	chr2	+	1947	2	FSM	ENSMUSG00000051373.6	ENSMUST00000057423.6	1947	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCCTGTGTGGTTCTTA	NA	False	NA	NA	False	AATACA	-22	NA	31985539	32000832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_31986275_31999620
transcript_30990.known	chr2	+	2918	20	FSM	ENSMUSG00000039254.17	ENSMUST00000036473.16	2918	20	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_15	17.3977423950124	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTATGTTATTTATTGA	NA	False	NA	17	True	AATAAA	-18	NA	32126601	32145017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32126754_32127371_32127524_32130438_32130546_32130676_32130728_32131664_32131812_32132904_32133017_32133476_32133543_32133630_32133725_32134245_32134402_32135558_32135690_32136026_32136123_32137548_32137642_32138626_32138724_32140481_32140575_32140800_32140922_32141273_32141372_32141921_32142036_32142887_32143015_32143727_32143906_32144284
transcript_30994.known	chr2	-	2005	7	FSM	ENSMUSG00000002550.17	ENSMUST00000002625.15	2005	7	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_2	20.9741904889478	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTGTCCTGTTTTATTT	NA	False	NA	NA	False	AATAAA	-17	NA	32150171	32145013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_32146224_32146629_32146679_32148101_32148197_32148288_32148432_32148582_32148680_32149591_32149752_32149920
transcript_30995.nic	chr2	-	2398	6	NIC	ENSMUSG00000002550.17	novel	2005	7	NA	NA	13	0	intron_retention	FALSE	canonical	3	135	junction_1	19.2831532691103	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATTTGTCCTGTTTTATTT	NA	False	NA	NA	False	AATAAA	-17	NA	32150158	32145013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_32146679_32148101_32148197_32148288_32148432_32148582_32148680_32149591_32149752_32149920
transcript_30996.known	chr2	+	318	1	FSM	ENSMUSG00000066068.6	ENSMUST00000118269.2	318	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACCCTCCCCCAATAAAA	NA	False	NA	NA	False	NA	NA	NA	32161856	32162174	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32161900_32162200
transcript_31.known	ERCC-00084	+	978	1	FSM	ERCC-00084A	DQ883682	978	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00084_+_0_1000
transcript_310.known	chr1	-	400	4	FSM	ENSMUSG00000098234.8	ENSMUST00000182742.2	400	4	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	223.143202649977	679	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	-15	True	AATAAA	-12	NA	10014342	10012249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_10012375_10012547_10012617_10012834_10012943_10014244
transcript_31000.known	chr2	-	919	6	FSM	ENSMUSG00000044627.12	ENSMUST00000140406.8	919	6	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	1714.39027062102	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32177947	32168827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_32169144_32170238_32170523_32170720_32170816_32171697_32171823_32177608_32177658_32177897
transcript_31004.known	chr2	-	768	5	FSM	ENSMUSG00000044627.12	ENSMUST00000183946.8	768	5	0	0	0	0	multi-exon	FALSE	canonical	3	3309	junction_1	124.51380445557	2519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178080	32168827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32177897
transcript_31005.known	chr2	-	522	5	FSM	ENSMUSG00000044627.12	ENSMUST00000113400.3	522	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	1473.86522026269	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATTGGGAGGGGTGGGT	NA	False	NA	-114	True	NA	NA	NA	32178081	32168929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_32169144_32170720_32170816_32171697_32171823_32177608_32177658_32178042
transcript_31008.known	chr2	-	580	4	FSM	ENSMUSG00000044627.12	ENSMUST00000113397.9	580	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	1606.82426612938	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTCTGATCCTTGTCT	NA	False	NA	-12	True	AATAAA	-14	NA	32178017	32168827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_32169144_32170720_32170816_32177608_32177658_32177897
transcript_31012.known	chr2	-	680	2	FSM	ENSMUSG00000039195.5	ENSMUST00000048792.5	680	2	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_1	0	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTTCTTCTTTGTGCCCA	NA	False	NA	3	True	ATTAAA	-21	NA	32271950	32269112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_32269546_32271703
transcript_31013.known	chr2	-	2618	2	FSM	ENSMUSG00000039195.5	ENSMUST00000146423.2	2618	2	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTATTTTGATGTCTGA	NA	False	NA	NA	False	AATAAA	-18	NA	32271874	32267108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_32269546_32271693
transcript_31014.known	chr2	+	4650	2	FSM	ENSMUSG00000039164.3	ENSMUST00000048431.3	4650	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATACACACTCCTCTTGT	NA	False	NA	NA	False	ATTAAA	-18	NA	32340468	32346965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32342962_32344808
transcript_31016.known	chr2	+	869	4	FSM	ENSMUSG00000026810.13	ENSMUST00000028151.7	869	4	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	58.5965490072202	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCATCCTTGCTCTG	4773	False	NA	23	True	AATAAA	-24	NA	32460869	32463591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32460925_32461217_32461308_32462308_32462412_32462970
transcript_31018.known	chr2	+	1412	3	FSM	ENSMUSG00000026810.13	ENSMUST00000140592.8	1412	3	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	64.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCGTTGGTGTTTGTCTCTC	4773	False	NA	7	True	AATAAA	-8	NA	32460869	32463575	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32460925_32461217_32461308_32462308
transcript_31019.nic	chr2	+	1900	3	NIC	ENSMUSG00000026810.13	novel	869	4	NA	NA	-30	0	intron_retention	FALSE	canonical	3	274	junction_1	59.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCATCCTTGCTCTG	4743	False	NA	23	True	AATAAA	-24	NA	32460839	32463591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_32460925_32461217_32462412_32462970
transcript_31022.known	chr2	+	3626	6	FSM	ENSMUSG00000079442.13	ENSMUST00000102818.11	3626	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	7.22218803410712	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTCAACCACTTCCTCCA	NA	False	NA	16	True	AATAAA	-18	NA	32477106	32489710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32477240_32477592_32477694_32479456_32479643_32484001_32484415_32485705_32485814_32487025
transcript_31023.known	chr2	+	2063	7	FSM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	98.788775790685	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAGAAGTGAGTGTATTGA	NA	False	NA	13	True	AATAAA	-17	NA	32515448	32525066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32515551_32518462_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
transcript_31026.nic	chr2	+	930	6	ISM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	2854	1191	-99	463	3prime_fragment	FALSE	canonical	3	200	junction_1	44.5268458348444	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTAGGATTGCTCCTTTC	NA	False	NA	NA	False	ACTAAA	-15	NA	32518302	32523875	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
transcript_31027.nic	chr2	+	2209	6	ISM	ENSMUSG00000026817.15	ENSMUST00000113277.8	2063	7	2770	-4	-183	0	3prime_fragment	FALSE	canonical	3	200	junction_1	44.5268458348444	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGTGAGTGTATTGAAACA	NA	False	NA	17	True	AATAAA	-21	NA	32518218	32525070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_32518501_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
transcript_31028.known	chr2	+	2034	6	FSM	ENSMUSG00000026817.15	ENSMUST00000068271.5	2034	6	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	85.0895998345274	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATAAGAAGTGAGTGTATT	NA	False	NA	11	True	AATAAA	-15	NA	32519515	32525064	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32519629_32519860_32519897_32520246_32520411_32521087_32521205_32523305_32523498_32523652
transcript_31030.known	chr2	+	3403	15	FSM	ENSMUSG00000026814.17	ENSMUST00000167841.8	3403	15	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	47.9038684475993	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTAGTTCCAGCAACACAG	582	False	NA	NA	False	AATAAA	-24	NA	32536633	32572681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32537037_32547530_32547683_32559434_32559576_32561353_32561520_32562229_32562396_32562848_32562970_32563261_32563437_32563603_32563747_32567564_32567703_32567934_32567974_32568467_32568585_32568902_32569155_32570292_32570348_32571207_32571310_32571448
transcript_31031.known	chr2	-	2273	15	FSM	ENSMUSG00000009566.13	ENSMUST00000028148.11	2273	15	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_8	41.2442327446381	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTATTCTCCTAGCTCCC	NA	False	NA	-13	True	AATAAA	-20	NA	32584197	32572620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_32573481_32574761_32574829_32575325_32575402_32575730_32575882_32576565_32576656_32576749_32576898_32577156_32577235_32577424_32577528_32577613_32577676_32577771_32577850_32577931_32578047_32581201_32581267_32582462_32582517_32582604_32582734_32584000
transcript_31038.known	chr2	-	1733	7	FSM	ENSMUSG00000009555.17	ENSMUST00000009699.16	1733	7	0	0	0	0	multi-exon	FALSE	canonical	3	1063	junction_2	88.3259430870807	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGCGTTTCCTGTGTTC	NA	False	NA	NA	False	ATTAAA	-25	NA	32602796	32597449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_32598302_32599478_32599628_32599784_32599957_32600054_32600222_32600488_32600580_32602042_32602125_32602576
transcript_31039.nic	chr2	-	1857	6	NIC	ENSMUSG00000009555.17	novel	1733	7	NA	NA	6	0	intron_retention	FALSE	canonical	3	1092	junction_4	84.0514128376198	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGCGTTTCCTGTGTTC	NA	False	NA	NA	False	ATTAAA	-25	NA	32602763	32597449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_32598302_32599478_32599957_32600054_32600222_32600488_32600580_32602042_32602125_32602576
transcript_3104.known	chr1	-	2901	17	FSM	ENSMUSG00000003458.13	ENSMUST00000003550.11	2901	17	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_8	31.8580224394108	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTGTTTGGTATTCTTC	8996	False	NA	50	True	ATTAAA	-21	NA	171910362	171893579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_171894364_171894897_171895111_171895355_171895511_171895752_171895841_171896128_171896225_171896328_171896432_171897542_171897716_171898817_171898896_171899031_171899137_171899687_171899841_171900032_171900143_171900343_171900495_171901839_171901986_171902481_171902604_171902971_171903096_171908778_171908884_171910167
transcript_31041.known	chr2	+	3107	11	FSM	ENSMUSG00000059013.13	ENSMUST00000113242.5	3107	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	3.98622628559895	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAATCTTTAAACTGG	1545	False	NA	NA	False	NA	NA	NA	32617717	32645524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32617819_32627530_32627571_32634762_32634892_32635846_32636302_32637033_32637159_32639164_32639698_32640963_32641080_32641525_32641698_32642625_32642738_32643000_32643208_32644407
transcript_31044.known	chr2	+	1536	5	FSM	ENSMUSG00000009563.17	ENSMUST00000009707.14	1536	5	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_1	20.9105236663265	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTGACCAAAGTTTCTTAC	589	False	NA	9	True	AATAAA	-20	NA	32647245	32652256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32647463_32648682_32648949_32649538_32649715_32650600_32650729_32651507
transcript_31045.known	chr2	+	915	5	FSM	ENSMUSG00000009563.17	ENSMUST00000156617.8	915	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	95.4214336509361	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTCTGAGAAGCCCAGG	610	False	NA	NA	False	NA	NA	NA	32647266	32651742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32647463_32648768_32648949_32649538_32649715_32650600_32650729_32651507
transcript_31048.known	chr2	+	952	5	FSM	ENSMUSG00000053746.9	ENSMUST00000066352.6	952	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	3.34477204006491	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAAGCTTCCTGTGGGGT	8191	False	NA	6	True	ATTAAA	-16	NA	32665797	32667609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32665908_32666315_32666536_32666718_32666819_32666994_32667041_32667133
transcript_31050.known	chr2	+	908	4	FSM	ENSMUSG00000053746.9	ENSMUST00000138214.2	908	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	3.85861230093008	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGCCACATCAGTCTGT	8270	False	NA	NA	False	NA	NA	NA	32665876	32667461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32665908_32666315_32666819_32666994_32667041_32667133
transcript_31051.known	chr2	+	3714	14	FSM	ENSMUSG00000026796.17	ENSMUST00000028135.15	3714	14	0	0	0	0	multi-exon	TRUE	canonical	3	292	junction_12	30.0169577319103	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTCATGTGCTGCTGGG	8857	False	NA	19	True	AATAAA	-19	NA	32766125	32815266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32766417_32795780_32795912_32799860_32799990_32801352_32801459_32802431_32802600_32809004_32809121_32809507_32809613_32809714_32809878_32810964_32811153_32812080_32812237_32812569_32812687_32812867_32812976_32813058_32813171_32813442
transcript_31055.known	chr2	+	1242	7	FSM	ENSMUSG00000038900.18	ENSMUST00000126610.2	1242	7	0	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_6	1457.06650690885	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCAATTGTTGGGGCTGCA	5641	False	NA	24	True	AATAAA	-25	NA	32851570	32854508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
transcript_31060.known	chr2	+	729	7	FSM	ENSMUSG00000038900.18	ENSMUST00000102811.10	729	7	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_1	2477.85254246943	732	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGGGCTTGGCTGCTTTTT	5822	False	NA	22	True	AATAAA	-21	NA	32851751	32854055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853079_32853508_32853596_32853752_32853866_32854002
transcript_31065.nic	chr2	+	1322	6	NIC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	-101	0	intron_retention	FALSE	canonical	3	2580	junction_5	1481.81753262674	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5540	False	NA	24	True	AATAAA	-23	NA	32851469	32854057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853596_32853752_32853866_32854002
transcript_31070.nic	chr2	+	1230	6	NIC	ENSMUSG00000038900.18	novel	729	7	NA	NA	-49	0	intron_retention	FALSE	canonical	3	310	junction_1	2525.09163398083	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5753	False	NA	24	True	AATAAA	-23	NA	32851682	32854057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853596_32853752_32853866_32854002
transcript_31073.nic	chr2	+	1479	5	NIC	ENSMUSG00000038900.18	novel	1242	7	NA	NA	-101	0	intron_retention	FALSE	canonical	3	2580	junction_4	1523.82780769351	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5540	False	NA	24	True	AATAAA	-23	NA	32851469	32854057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996_32853866_32854002
transcript_31075.nic	chr2	+	1387	5	NIC	ENSMUSG00000038900.18	novel	729	7	NA	NA	-49	0	intron_retention	FALSE	canonical	3	310	junction_1	2554.7315416693	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5753	False	NA	24	True	AATAAA	-23	NA	32851682	32854057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_32851973_32852060_32852135_32852585_32852685_32852996_32853866_32854002
transcript_31077.known	chr2	+	600	4	FSM	ENSMUSG00000038900.18	ENSMUST00000125415.3	600	4	0	0	0	0	multi-exon	FALSE	canonical	3	5241	junction_1	528.984771887517	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGTTGGCTGGTGCAATC	5822	False	NA	NA	False	NA	NA	NA	32851751	32853323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32851852_32852060_32852135_32852585_32852685_32852996
transcript_31084.known	chr2	+	1417	4	FSM	ENSMUSG00000038900.18	ENSMUST00000154340.8	1417	4	0	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_3	1756.95310757636	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCTTGGCTGCTTTTTGG	5811	False	NA	24	True	AATAAA	-23	NA	32851740	32854057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_32852135_32852585_32852685_32852996_32853866_32854002
transcript_31085.known	chr2	-	2108	10	FSM	ENSMUSG00000026791.15	ENSMUST00000028129.13	2108	10	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_4	8.32666399786453	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACTTCAGTGGAGCCAGA	3950	False	NA	-13	True	AATAAA	-15	NA	32872094	32863001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_32863745_32864849_32864996_32865325_32865497_32865931_32866041_32866148_32866293_32866872_32867073_32870013_32870114_32871372_32871580_32871732_32871896_32871969
transcript_31088.nic	chr2	-	2158	8	NIC	ENSMUSG00000026791.15	novel	2108	10	NA	NA	-5	0	intron_retention	FALSE	canonical	2	6	junction_3	62.0269855689885	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACTTCAGTGGAGCCAGA	3944	False	NA	-13	True	AATAAA	-15	NA	32872100	32863001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_32863745_32864849_32864996_32865325_32865497_32866148_32866293_32866872_32867073_32870013_32870114_32871372_32871896_32871969
transcript_3109.nic	chr1	+	946	6	ISM	ENSMUSG00000026553.18	ENSMUST00000027833.12	4351	33	-29	29633	-2	-863	5prime_fragment	FALSE	canonical	3	862	junction_4	74.9415772452115	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGAGACTTTGCAGGTA	3038	False	NA	NA	False	AATAAA	-7	NA	171910369	171920264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730_171918808_171919811
transcript_31096.known	chr2	-	6035	18	FSM	ENSMUSG00000038831.17	ENSMUST00000131298.7	6035	18	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_6	7.39259893617541	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTCTATTTATTAGTGTC	NA	False	NA	NA	False	ATTAAA	-19	NA	33261441	33023428	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_33027722_33031006_33031099_33033055_33033162_33033311_33033405_33035409_33035516_33036581_33036666_33048921_33049049_33058192_33058261_33062429_33062524_33064422_33064561_33150489_33150617_33163572_33163666_33166157_33166248_33174836_33174921_33214664_33214716_33226524_33226633_33230724_33230846_33261281
transcript_31098.known	chr2	-	4998	3	FSM	ENSMUSG00000026788.14	ENSMUST00000028125.12	4998	3	0	0	0	0	multi-exon	TRUE	canonical	3	44	junction_1	8.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGTTGTTTTCACTCAT	NA	False	NA	-1	True	AATAAA	-25	NA	33358544	33340298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_33345136_33354925_33354987_33358444
transcript_31099.known	chr2	-	487	3	FSM	ENSMUSG00000026788.14	ENSMUST00000126442.2	487	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCCGATGTAATGAACCC	NA	False	NA	NA	False	AAAACA	-15	NA	33358571	33344899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_33345136_33354925_33355050_33358444
transcript_3110.known	chr1	+	2973	5	FSM	ENSMUSG00000026553.18	ENSMUST00000138407.8	2973	5	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_4	82.5753443831753	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAAACAAAACCAAAGA	2878	False	NA	NA	False	NA	NA	NA	171910209	171921127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171910517_171915118_171915233_171916663_171916738_171918505_171918587_171918730
transcript_31102.known	chr2	-	1828	4	FSM	ENSMUSG00000026788.14	ENSMUST00000113156.2	1828	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	10.6770782520313	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGTTCTCATCCTGGCC	NA	False	NA	NA	False	ATTAAA	-20	NA	33358517	33343533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_33345136_33352277_33352370_33354925_33354987_33358444
transcript_31103.known	chr2	-	4998	10	FSM	ENSMUSG00000038740.10	ENSMUST00000041555.10	4998	10	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	24.5990063033268	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCAGTTTGCTGTTATTT	3749	False	NA	-1	True	AATAAA	-20	NA	33777958	33619964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_33623544_33642320_33642381_33645001_33645058_33692756_33692852_33715059_33715183_33717693_33717824_33724548_33724646_33730170_33730279_33764349_33764473_33777331
transcript_31104.known	chr2	-	520	3	FSM	ENSMUSG00000038740.10	ENSMUST00000146892.2	520	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	8	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAAGCTGAAGTGTGTTTT	4213	False	NA	-5	True	AATAAA	-15	NA	33777494	33763625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_33763860_33764349_33764473_33777331
transcript_31107.nnic	chr2	-	1672	3	NNC	ENSMUSG00000087461.3	novel	2668	4	NA	NA	80959	-903	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	1	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTGTTTACCCTCAAGA	NA	False	NA	NA	False	NA	NA	NA	33916782	33909203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_33910509_33915810_33915970_33916574
transcript_31108.nnic	chr2	-	731	3	NNC	ENSMUSG00000087461.3	novel	2668	4	NA	NA	80959	-1844	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	1	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTCTGAGCAGAATCTGT	NA	False	NA	NA	False	NA	NA	NA	33916782	33910144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_33910509_33915810_33915970_33916574
transcript_31109.known	chr2	-	2587	9	FSM	ENSMUSG00000038718.16	ENSMUST00000040638.15	2587	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	7.22733526273688	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGCGGGTTCTTGTGATGC	832	False	NA	NA	False	NA	NA	NA	34262056	34061734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_34062986_34065876_34065967_34066760_34066874_34068188_34068355_34094791_34094928_34103263_34103455_34114416_34114659_34260835_34260910_34261732
transcript_31113.known	chr2	+	3111	12	FSM	ENSMUSG00000038696.15	ENSMUST00000147337.8	3111	12	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_6	16.5988150527989	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTTTGTATATTGCTTTG	NA	False	NA	NA	False	AATAAA	-14	NA	34297194	34514961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_34297267_34322014_34322343_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
transcript_31118.known	chr2	+	1630	11	FSM	ENSMUSG00000038696.15	ENSMUST00000124443.8	1630	11	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	60.6699266523374	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAACAAAGAAAACTGA	NA	False	NA	NA	False	NA	NA	NA	34296873	34513487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_34297267_34325144_34325235_34334269_34334419_34387712_34387886_34408684_34408862_34423799_34423910_34453066_34453175_34471203_34471345_34487434_34487573_34509856_34509955_34513434
transcript_31122.known	chr2	+	798	1	FSM	ENSMUSG00000081992.2	ENSMUST00000119822.2	798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATCCAGATTTTTAATGG	NA	False	NA	NA	False	NA	NA	NA	34455010	34455808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_34455000_34455800
transcript_31123.known	chr2	-	5758	26	FSM	ENSMUSG00000026867.20	ENSMUST00000113099.10	5758	26	0	0	0	0	multi-exon	FALSE	canonical	2	81	junction_18	31.5772069695849	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	5780	False	NA	NA	False	NA	NA	NA	34644573	34566996	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_34568190_34568444_34568643_34571646_34571720_34574193_34574408_34578869_34579058_34580473_34580634_34581117_34581228_34583384_34583515_34585497_34585621_34589837_34589919_34590774_34590863_34594177_34594543_34594647_34594726_34596031_34596152_34596709_34596845_34599123_34599265_34602176_34602351_34605216_34605343_34607264_34607395_34610579_34610741_34615054_34615245_34615390_34615526_34617227_34617315_34618342_34619187_34620474_34620693_34644277
transcript_31126.known	chr2	+	3672	9	FSM	ENSMUSG00000026864.14	ENSMUST00000028222.13	3672	9	0	0	0	0	multi-exon	FALSE	canonical	3	1920	junction_1	305.196632312678	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTACATTGCAACTCTTT	NA	False	NA	NA	False	AATGAA	-16	NA	34661981	34667559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_34662159_34662240_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
transcript_3113.known	chr1	+	1917	8	FSM	ENSMUSG00000003464.14	ENSMUST00000075895.9	1917	8	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_6	20.1666526114529	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGTTATTTTTCATC	NA	False	NA	24	True	AATAAA	-14	NA	171954321	171962850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
transcript_31131.known	chr2	+	2613	8	FSM	ENSMUSG00000026864.14	ENSMUST00000100171.3	2613	8	0	0	0	0	multi-exon	FALSE	canonical	3	2314	junction_3	220.40537791135	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTCAGGTGTGTCTTTCTT	NA	False	NA	18	True	ACTAAA	-14	NA	34662106	34666543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_34662459_34662570_34662803_34663181_34663320_34663832_34663946_34664039_34664431_34664546_34664785_34665077_34665246_34665562
transcript_3114.nnic	chr1	+	1875	8	NNC	ENSMUSG00000003464.14	novel	1917	8	NA	NA	-11	-1	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_7	148.836302352481	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGGGTTATTTTTCAT	NA	False	NA	23	True	AATAAA	-13	NA	171954310	171962849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961825
transcript_31143.known	chr2	-	1431	8	FSM	ENSMUSG00000070953.14	ENSMUST00000118108.2	1431	8	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_7	117.809081109381	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCCCACATTTGTATTA	2821	False	NA	-42	True	NA	NA	NA	34689740	34669248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689434
transcript_31144.known	chr2	-	2968	8	FSM	ENSMUSG00000070953.14	ENSMUST00000145903.8	2968	8	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_7	62.9123134503371	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTAGTCACACACAAGAAAA	2637	False	NA	NA	False	AATAAA	-10	NA	34689924	34667567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_34669542_34670608_34670759_34674557_34674708_34675578_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689762
transcript_31148.known	chr2	-	600	5	FSM	ENSMUSG00000070953.14	ENSMUST00000144113.2	600	5	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_4	53.1812937037075	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCTCTCAAACAGGAGACA	2795	False	NA	NA	False	GGGGCT	-33	NA	34689766	34675514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_34675741_34680514_34680668_34685183_34685342_34687386_34687446_34689762
transcript_31149.known	chr2	-	1923	8	FSM	ENSMUSG00000035949.16	ENSMUST00000113080.9	1923	8	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_7	72.0294724259395	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGCCTTTGTTCTTTGAAA	9201	False	NA	-6	True	ATTAAA	-12	NA	34716242	34695352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34713080_34715973_34716083_34716183
transcript_3115.nnic	chr1	+	1887	8	NNC	ENSMUSG00000003464.14	novel	1917	8	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	80	junction_2	126.880950146994	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGTTATTTTTCATC	NA	False	NA	24	True	AATAAA	-14	NA	171954301	171962850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_171954416_171956197_171956308_171956771_171956888_171957468_171957555_171958178_171958341_171960696_171960874_171961566_171961612_171961773
transcript_31150.known	chr2	-	1838	8	FSM	ENSMUSG00000035949.16	ENSMUST00000091020.10	1838	8	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_6	107.582336764329	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTTGTTCTTTGAAATT	9196	False	NA	-4	True	ATTAAA	-14	NA	34716247	34695350	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_34696012_34697289_34697460_34698525_34698613_34700994_34701129_34702826_34703022_34712569_34712988_34715973_34716083_34716183
transcript_31155.known	chr2	-	1930	4	FSM	ENSMUSG00000035949.16	ENSMUST00000131534.8	1930	4	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_3	100.641277151409	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCCAGCTCCAATATGTT	9120	False	NA	NA	False	NA	NA	NA	34716323	34701850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_34703022_34712569_34713080_34715973_34716083_34716183
transcript_31160.nnic	chr2	-	2011	10	NNC	ENSMUSG00000026869.13	novel	4397	10	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_6	175.514974212571	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGCGTTGGTATTCCG	NA	False	NA	-14	True	AATAAA	-14	NA	34760987	34742113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753548_34755538_34755668_34755993_34756108_34756904_34757050_34760761
transcript_31161.known	chr2	-	4397	10	FSM	ENSMUSG00000026869.13	ENSMUST00000028225.12	4397	10	0	0	0	0	multi-exon	FALSE	canonical	3	516	junction_4	38.498997902623	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCCAAGAGAAAGCTAGCT	NA	False	NA	NA	False	NA	NA	NA	34760974	34739745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753579_34755538_34755668_34755993_34756108_34756904_34757050_34760761
transcript_31164.nnic	chr2	-	1876	9	NIC	ENSMUSG00000026869.13	novel	4397	10	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	3	104	junction_8	158.265945089271	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGCGTTGGTATTCCG	NA	False	NA	-14	True	AATAAA	-14	NA	34760966	34742113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753579_34755538_34755668_34755993_34756108_34760761
transcript_31166.nnic	chr2	-	1690	9	NIC	ENSMUSG00000026869.13	novel	4397	10	NA	NA	8	155	combination_of_known_splicesites	FALSE	canonical	3	104	junction_8	158.265945089271	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGATTCTCTCAACCAC	NA	False	NA	-21	True	AATAAA	-16	NA	34760966	34742299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_34742846_34744263_34744405_34746459_34746570_34747649_34747842_34750643_34750787_34753468_34753579_34755538_34755668_34755993_34756108_34760761
transcript_31167.nic	chr2	-	884	2	ISM	ENSMUSG00000026869.13	ENSMUST00000143456.2	3406	8	-42	14278	-13	559	5prime_fragment	FALSE	canonical	3	588	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAATTCAAAG	NA	False	NA	NA	False	ATTAAA	-37	NA	34760987	34756391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_34757050_34760761
transcript_31171.known	chr2	-	3081	8	FSM	ENSMUSG00000026878.18	ENSMUST00000028238.15	3081	8	0	0	0	0	multi-exon	FALSE	canonical	3	853	junction_1	102.482054178141	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGCATTATTTTTGA	9552	False	NA	NA	False	AATAAA	-26	NA	35091132	35070216	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_35072460_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
transcript_31172.nic	chr2	-	3107	8	NIC	ENSMUSG00000026878.18	novel	3081	8	NA	NA	-53	-10	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	365.068235165059	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATTGAACATAGTTGCA	9637	False	NA	NA	False	AATAAA	-16	NA	35091047	35070226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_35072581_35073404_35073436_35073755_35073844_35076685_35076753_35079911_35080090_35081523_35081578_35082632_35082692_35090771
transcript_31179.known	chr2	+	2607	18	FSM	ENSMUSG00000026879.15	ENSMUST00000201185.4	2607	18	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	7.49855810822468	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTCCCCAGGTGTCTCA	NA	False	NA	NA	False	AATAAA	-15	NA	35146391	35197902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_35146486_35156831_35156916_35173916_35174122_35174685_35174841_35180344_35180507_35182598_35182749_35183489_35183580_35184946_35185080_35186136_35186226_35186377_35186594_35188806_35188941_35191477_35191569_35192502_35192674_35193179_35193355_35194275_35194401_35194592_35194671_35196557_35196619_35197508
transcript_31181.known	chr2	-	2787	7	FSM	ENSMUSG00000026880.12	ENSMUST00000028241.7	2787	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	5.5876848714134	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGTGAGTCTTGTTTCT	NA	False	NA	0	True	AATAAA	-20	NA	35226988	35203997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_35206068_35210342_35210478_35211494_35211699_35213675_35213759_35215325_35215399_35216432_35216537_35226870
transcript_31183.known	chr2	-	3606	9	FSM	ENSMUSG00000035778.18	ENSMUST00000102794.8	3606	9	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_8	26.0836994117016	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTCTGGTCTGGTATGG	NA	False	NA	-3	True	AATAAA	-13	NA	35351461	35290194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35306483_35306520_35312191_35312281_35313243_35313425_35322525_35322645_35351206
transcript_31186.known	chr2	-	3391	8	FSM	ENSMUSG00000035778.18	ENSMUST00000113002.9	3391	8	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_7	27.2381784880513	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGGTCTGGTATGGATTA	NA	False	NA	1	True	AATAAA	-17	NA	35351278	35290190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_35292815_35297956_35298095_35303337_35303440_35304230_35304297_35312191_35312281_35313243_35313425_35322525_35322645_35351206
transcript_31187.known	chr2	-	3340	8	FSM	ENSMUSG00000035778.18	ENSMUST00000113001.9	3340	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	33.733045628092	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATATTCTGGTCTGGTATGG	NA	False	NA	-3	True	AATAAA	-13	NA	35351261	35290194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_35292815_35297956_35298095_35303337_35303440_35306483_35306520_35312191_35312281_35313243_35313425_35322525_35322645_35351206
transcript_3119.known	chr1	+	855	5	FSM	ENSMUSG00000003464.14	ENSMUST00000147799.8	855	5	0	0	0	0	multi-exon	FALSE	canonical	3	412	junction_2	19.600701518058	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGAGTTTGACTGATTCATT	NA	False	NA	NA	False	TATAAA	-14	NA	171954322	171958578	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957468_171957555_171958178
transcript_31194.known	chr2	-	861	4	FSM	ENSMUSG00000026895.8	ENSMUST00000070112.6	861	4	0	0	0	0	multi-exon	FALSE	canonical	3	1222	junction_2	59.9184631163235	937	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTGTGTTTTATTATGCT	NA	False	NA	-1	True	ATTAAA	-15	NA	35939418	35926337	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_35926654_35929723_35929890_35934361_35934526_35939203
transcript_31195.known	chr2	+	714	5	FSM	ENSMUSG00000026894.5	ENSMUST00000028256.5	714	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTGAGTGAGTGAGTGCTT	NA	False	NA	NA	False	AATAAA	-26	NA	35939469	35969730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_35939588_35942948_35943097_35944972_35945085_35947030_35947163_35969526
transcript_3120.known	chr1	+	642	4	FSM	ENSMUSG00000003464.14	ENSMUST00000127662.2	642	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	205.496147571352	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACACATTTTCTGACAAATT	NA	False	NA	NA	False	NA	NA	NA	171954339	171957762	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171954416_171956197_171956308_171956721_171956888_171957472
transcript_31200.known	chr2	+	2623	7	FSM	ENSMUSG00000026887.10	ENSMUST00000028250.9	2623	7	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_1	20.1941960858945	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTCCAGGGTCTGTTCTT	NA	False	NA	NA	False	NA	NA	NA	36026400	36080659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_36026712_36031457_36031670_36037914_36038071_36043604_36043724_36049610_36049703_36067126_36067287_36079086
transcript_31204.known	chr2	-	2617	6	FSM	ENSMUSG00000026889.13	ENSMUST00000028251.10	2617	6	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_3	16.6300932047899	219	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTGGTCTTATTGTCT	NA	False	NA	-23	True	AATAAA	-16	NA	36026785	36006090	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_36007987_36010824_36010911_36012863_36012951_36017136_36017264_36024146_36024276_36026493
transcript_31208.known	chr2	-	567	1	FSM	ENSMUSG00000083716.5	ENSMUST00000120418.2	567	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGATCTTAACTGTTAA	NA	False	NA	NA	False	NA	NA	NA	36698404	36697837	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_36697800_36698400
transcript_31209.known	chr2	-	2858	4	FSM	ENSMUSG00000009030.15	ENSMUST00000009174.15	2858	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	14.3527000944073	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCTGTATATTAGATATTT	NA	False	NA	-7	True	AATAAA	-20	NA	37249344	37240085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_37242395_37245647_37245830_37247215_37247393_37249154
transcript_31211.known	chr2	-	5267	2	FSM	ENSMUSG00000050714.10	ENSMUST00000067043.5	5267	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGGTGTCATTGACTTC	NA	False	NA	2	True	AATAAA	-14	NA	37333133	37322179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_37327012_37332698
transcript_31215.nic	chr2	+	1581	10	ISM	ENSMUSG00000035437.16	ENSMUST00000133434.8	1594	11	6	3510	0	-1867	5prime_fragment	FALSE	canonical	3	116	junction_1	50.2610469400128	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTCACCTGGGTGCCGA	1545	False	NA	NA	False	NA	NA	NA	37333296	37382091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_37333469_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921
transcript_31216.nic	chr2	+	1603	10	ISM	ENSMUSG00000035437.16	ENSMUST00000066055.10	4247	19	-137	52883	-137	-1867	5prime_fragment	FALSE	canonical	3	120	junction_1	49.1884760166394	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTTCACCTGGGTGCCGA	NA	False	NA	NA	False	NA	NA	NA	37342119	37382091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_37342314_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921
transcript_31218.known	chr2	+	1594	11	FSM	ENSMUSG00000035437.16	ENSMUST00000133434.8	1594	11	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	48.2323542863087	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGGAGAAAAAGAATAAT	1539	False	NA	NA	False	GATAAA	-3	NA	37333290	37385601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_37333469_37359388_37359589_37362306_37362527_37363590_37363796_37365303_37365479_37373739_37373898_37377077_37377189_37377523_37377591_37379742_37379846_37381921_37382092_37385594
transcript_3122.known	chr1	+	2754	14	FSM	ENSMUSG00000026554.16	ENSMUST00000191689.6	2754	14	0	0	0	0	multi-exon	TRUE	canonical	3	418	junction_1	55.9704063816991	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATTCTCTATGAATCCA	NA	False	NA	56	True	TTTAAA	-6	NA	171975684	172023074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171975736_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
transcript_31223.known	chr2	+	10338	10	FSM	ENSMUSG00000026749.12	ENSMUST00000054234.10	10338	10	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	27.0760246548697	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAAAAATCAAA	NA	False	NA	NA	False	NA	NA	NA	38401654	38484618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_38401806_38440564_38440684_38447827_38447969_38448864_38448928_38450892_38451004_38458858_38458968_38459639_38459748_38467250_38467346_38472394_38472509_38475291
transcript_31229.known	chr2	+	1513	10	FSM	ENSMUSG00000026749.12	ENSMUST00000112895.8	1513	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	94.3328752769929	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGCTGTGTGCTTCATTT	NA	False	NA	-57	True	NA	NA	NA	38401825	38475778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_38401992_38440564_38440684_38447827_38447969_38448864_38448928_38450892_38451004_38458858_38458968_38459639_38459748_38467250_38467346_38472394_38472509_38475291
transcript_31239.known	chr2	-	1160	8	FSM	ENSMUSG00000026750.7	ENSMUST00000028083.6	1160	8	0	0	0	0	multi-exon	FALSE	canonical	3	1531	junction_5	118.933011500129	2340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGGTTGTAATGTTGG	2213	False	NA	-18	True	AATAAA	-24	NA	38534099	38478047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_38478301_38480708_38480861_38503443_38503503_38523862_38523979_38530084_38530226_38532189_38532288_38533369_38533464_38533852
transcript_3124.known	chr1	+	2859	14	FSM	ENSMUSG00000026554.16	ENSMUST00000192704.6	2859	14	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_1	115.931269170995	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGTATCAAGTTAAAATTA	NA	False	NA	15	True	ATTAAA	-17	NA	171975708	172023033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_171975906_171976815_171976889_171993414_171993486_171999895_172000549_172001509_172001651_172003049_172003145_172007473_172007585_172013862_172013936_172014421_172014480_172014919_172015028_172016505_172016637_172020084_172020205_172021351_172021469_172022122
transcript_31245.known	chr2	+	1339	4	FSM	ENSMUSG00000026755.15	ENSMUST00000112862.7	1339	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	449.53704580997	567	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGGCTTCAAAAGTCATC	NA	False	NA	8	True	AATAAA	-19	NA	38898087	38905889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_38898357_38903126_38903200_38903734_38903912_38905069
transcript_31247.known	chr2	+	752	4	FSM	ENSMUSG00000026755.15	ENSMUST00000090993.8	752	4	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_1	241.831897537663	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTCTGTTTGAAATGGGG	NA	False	NA	NA	False	NA	NA	NA	38898168	38905405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_38898337_38903128_38903200_38903734_38903912_38905069
transcript_31251.known	chr2	-	541	3	FSM	ENSMUSG00000062997.7	ENSMUST00000152441.2	541	3	0	0	0	0	multi-exon	FALSE	canonical	3	39700	junction_1	236.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAGATGACAACGACAATAA	NA	False	NA	-48	True	NA	NA	NA	38895055	38891630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_38891778_38894118_38894201_38894743
transcript_31260.known	chr2	-	1494	9	FSM	ENSMUSG00000026754.17	ENSMUST00000136261.2	1494	9	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_8	8.4400459121974	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGAGCTCCAGGCGATCA	NA	False	NA	NA	False	NA	NA	NA	38955497	38937083	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_38937779_38938321_38938451_38940170_38940204_38942015_38942114_38942967_38943043_38946071_38946163_38953253_38953517_38954686_38954736_38955436
transcript_31261.nic	chr2	-	1003	4	ISM	ENSMUSG00000026754.17	ENSMUST00000136261.2	1494	9	-83	8532	-27	-8532	5prime_fragment	FALSE	canonical	3	34	junction_3	10.6770782520313	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAAGTTTGAAGACTTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	38955580	38945615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_38946163_38953253_38953517_38954686_38954736_38955436
transcript_31262.known	chr2	-	10709	18	FSM	ENSMUSG00000035236.18	ENSMUST00000038874.12	10709	18	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	3.37403068228235	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTATTTCTTTAGT	NA	False	NA	NA	False	AATAAA	-16	NA	39080746	38956225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_38965169_38970088_38970190_38970385_38970560_38973549_38973623_38984714_38984797_38989387_38989488_38992332_38992412_38993214_38993317_38993675_38993778_38996931_38997085_38997219_38997319_38998318_38998416_39011122_39011222_39013015_39013103_39015101_39015198_39022966_39023099_39080000_39080046_39080601
transcript_31264.known	chr2	-	4115	7	FSM	ENSMUSG00000026753.6	ENSMUST00000028087.6	4115	7	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_2	25.493463214453	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATCTCATGCAGTATAC	NA	False	NA	NA	False	AATAAA	-29	NA	39116463	39084365	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_39087602_39089674_39089885_39090053_39090134_39094844_39094987_39096663_39096730_39100969_39101066_39116178
transcript_31268.known	chr2	-	1358	5	FSM	ENSMUSG00000026753.6	ENSMUST00000204257.3	1358	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	182.956791347028	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATAATTGTACTGATCTTT	NA	False	NA	48	True	TTTAAA	-41	NA	39116294	39086745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_39087602_39089674_39089885_39090053_39090134_39100969_39101066_39116178
transcript_31270.known	chr2	-	357	1	FSM	ENSMUSG00000083240.4	ENSMUST00000118708.2	357	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGGAAGTGCCTGCTCT	NA	False	NA	NA	False	CATAAA	-8	NA	40017872	40017515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_40017500_40017900
transcript_31271.nic	chr2	-	2553	11	NIC	ENSMUSG00000036890.14	novel	2564	11	NA	NA	-6	0	combination_of_known_junctions	TRUE	canonical	3	29	junction_10	9.30644937664198	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTCATTTGCGTCTAAGT	NA	False	NA	-6	True	AATAAA	-25	NA	44817282	44454426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_44455547_44460430_44460523_44461224_44461296_44465454_44465600_44481892_44482003_44525013_44525329_44642058_44642233_44646279_44646448_44715362_44715556_44750302_44750339_44817153
transcript_31284.known	chr2	-	1477	14	FSM	ENSMUSG00000026761.13	ENSMUST00000154784.8	1477	14	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	114.388107132055	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTGCACTTAGTATGTT	NA	False	NA	NA	False	TATAAA	-12	NA	48839243	48795327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800255_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
transcript_31288.nic	chr2	-	1672	14	NIC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	0	110	combination_of_known_junctions	FALSE	canonical	3	25	junction_13	125.016069972941	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCATGGTCCATAAAATGAT	NA	False	NA	-39	True	AATAAA	-15	NA	48839253	48795217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839105
transcript_31289.known	chr2	-	4066	14	FSM	ENSMUSG00000026761.13	ENSMUST00000028098.11	4066	14	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_6	44.7134201423734	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGATGAAGCATTTTTT	NA	False	NA	NA	False	AGTAAA	-18	NA	48839288	48792835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
transcript_31299.nnic	chr2	-	1600	13	NIC	ENSMUSG00000026761.13	novel	4066	14	NA	NA	-7	110	combination_of_known_splicesites	FALSE	canonical	3	21	junction_10	129.063587902329	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCATGGTCCATAAAATGAT	NA	False	NA	-39	True	AATAAA	-15	NA	48839295	48795217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_48795612_48799277_48799346_48799430_48799527_48800197_48800307_48802573_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48827463_48827541_48830344_48830413_48839128
transcript_3130.known	chr1	-	2501	4	FSM	ENSMUSG00000013698.13	ENSMUST00000013842.12	2501	4	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_1	8.37987005998436	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGACTGATTCTAGAATCT	NA	False	NA	-4	True	AATAAA	-20	NA	172034371	172024294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_172026258_172026677_172026834_172027974_172028149_172034163
transcript_31305.known	chr2	-	2133	10	FSM	ENSMUSG00000026761.13	ENSMUST00000141441.8	2133	10	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_2	49.1515670473473	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTTTTTTTACTGCAG	NA	False	NA	NA	False	AATAAA	-15	NA	48839246	48801415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_48802661_48807176_48807351_48817107_48817260_48819692_48819742_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
transcript_31307.known	chr2	-	1153	7	FSM	ENSMUSG00000026761.13	ENSMUST00000090976.10	1153	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	170.808290847436	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGACAGACTTTGGGTT	NA	False	NA	NA	False	NA	NA	NA	48839246	48821969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_48822610_48823091_48823178_48823561_48823635_48826783_48826875_48827463_48827541_48830344_48830413_48839128
transcript_31311.known	chr2	-	647	4	FSM	ENSMUSG00000026761.13	ENSMUST00000123809.2	647	4	0	0	0	0	multi-exon	FALSE	canonical	3	457	junction_3	31.4572019664107	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGTCCCAACTCAGGACTT	NA	False	NA	NA	False	NA	NA	NA	48839244	48826488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_48826875_48827463_48827541_48830344_48830413_48839128
transcript_31312.known	chr2	+	5686	11	FSM	ENSMUSG00000052155.6	ENSMUST00000063886.4	5686	11	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_9	8.77268487978452	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCACATGCAGTTTTTCT	NA	False	NA	15	True	AATAAA	-18	NA	48704120	48793281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_48704839_48760300_48760509_48763068_48763179_48763330_48763486_48780309_48780454_48782140_48782285_48783518_48783665_48784677_48784793_48786983_48787123_48788489_48788621_48789605
transcript_31314.nic	chr2	+	2701	9	ISM	ENSMUSG00000026764.16	ENSMUST00000028102.14	6856	26	81055	34331	-226	4863	internal_fragment	FALSE	canonical	3	18	junction_8	5.02493781056044	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATGATGTTATTATTTCA	NA	False	NA	NA	False	AATAAA	-23	NA	49590364	49630459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_49590618_49590968_49591118_49600731_49600881_49612988_49613162_49617902_49617972_49620128_49620336_49622715_49622863_49625444_49625634_49629094
transcript_31315.nic	chr2	+	717	3	ISM	ENSMUSG00000026764.16	ENSMUST00000146247.2	729	7	-226	19217	-226	-19217	5prime_fragment	FALSE	canonical	3	34	junction_1	0	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGCCCCAGCTCATTCCA	NA	False	NA	NA	False	ACTAAA	-20	NA	49590364	49601046	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_49590618_49590968_49591118_49600731
transcript_31316.known	chr2	-	1351	9	FSM	ENSMUSG00000026766.17	ENSMUST00000147345.8	1351	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	284.132011572086	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186707	50169892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_50170415_50170584_50170671_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182911_50186263_50186322_50186654
transcript_31323.nic	chr2	-	1290	8	NIC	ENSMUSG00000026766.17	novel	1351	9	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_6	203.005881085012	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186732	50169892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182911_50186263_50186322_50186654
transcript_31325.known	chr2	-	803	8	FSM	ENSMUSG00000026766.17	ENSMUST00000134480.8	803	8	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_6	199.415574689068	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTTAGGATTCTCAGTTG	NA	False	NA	NA	False	NA	NA	NA	50186699	50170361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182926_50186263_50186322_50186654
transcript_31326.known	chr2	-	1342	8	FSM	ENSMUSG00000026766.17	ENSMUST00000102769.11	1342	8	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_7	76.2190720146573	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186729	50169892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263_50186322_50186654
transcript_31327.nic	chr2	-	1371	8	NIC	ENSMUSG00000026766.17	novel	1342	8	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_7	208.37515226541	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGTGTTTTTTATTGCA	NA	False	NA	0	True	AATAAA	-20	NA	50186793	50169892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_50170415_50171114_50171202_50177806_50177938_50178938_50179045_50181296_50181515_50182820_50182966_50186263_50186322_50186689
transcript_3133.nnic	chr1	-	1513	11	NNC	ENSMUSG00000007122.12	novel	1847	11	NA	NA	364	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	2.13541565040626	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGTGTCTGTTGTTGAT	5759	False	NA	NA	False	AATAAA	-19	NA	172046918	172037461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_172038071_172039514_172039590_172040594_172040696_172040903_172040959_172041372_172041419_172042578_172042710_172043043_172043118_172043475_172043588_172044360_172044462_172045456_172045542_172046794
transcript_31331.known	chr2	-	2828	5	FSM	ENSMUSG00000017144.9	ENSMUST00000017288.9	2828	5	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_2	50.2792203599061	265	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGGGATGTTTTCTGC	NA	False	NA	-9	True	AATAAA	-16	NA	51039123	51020449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_51022558_51024094_51024230_51027147_51027258_51038235_51038324_51038736
transcript_31336.known	chr2	-	2057	5	FSM	ENSMUSG00000036249.17	ENSMUST00000102767.8	2057	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	2.77263412660235	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGAGCTGCATCATTATT	NA	False	NA	NA	False	ATTAAA	-1	NA	51825019	51814459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_51815947_51816692_51816773_51819671_51819862_51822411_51822536_51824843
transcript_31337.known	chr2	-	2106	5	FSM	ENSMUSG00000036249.17	ENSMUST00000102768.8	2106	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	13.0455931256497	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGAGCTGCATCATTATT	NA	False	NA	NA	False	ATTAAA	-1	NA	51825175	51814459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_51815947_51816692_51816773_51819671_51819862_51822411_51822532_51824946
transcript_31339.known	chr2	-	1162	9	FSM	ENSMUSG00000026946.10	ENSMUST00000145481.8	1162	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.57087047515039	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTGTCTTCTTACTCTTT	8642	False	NA	NA	False	CATAAA	-17	NA	51863016	51838512	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_51838789_51839995_51840103_51842453_51842641_51842787_51842895_51845937_51846101_51848908_51849005_51850582_51850673_51862599_51862640_51862920
transcript_3134.known	chr1	-	990	5	FSM	ENSMUSG00000007122.12	ENSMUST00000170638.2	990	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCAAGTGTCTGTTGTTGAT	NA	False	NA	NA	False	AATAAA	-19	NA	172041522	172037461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_172038071_172039514_172039590_172040594_172040696_172040903_172040959_172041372
transcript_31340.known	chr2	-	1130	8	FSM	ENSMUSG00000026946.10	ENSMUST00000112705.9	1130	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	2.91372543633873	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCAGTGTCTTCTTACT	8630	False	NA	NA	False	CATAAA	-13	NA	51863028	51838516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_51838789_51839995_51840103_51842453_51842641_51842787_51842895_51845937_51846101_51848908_51849005_51850582_51850673_51862920
transcript_31343.nnic	chr2	+	3088	26	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	-6	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_16	121.215748151798	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAAAAAAAAGTGAAA	NA	False	NA	46	True	AAAAAG	-27	NA	51962837	51997737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649
transcript_31349.nnic	chr2	+	771	8	NNC	ENSMUSG00000036202.17	novel	8509	36	NA	NA	-6	4244	at_least_one_novel_splicesite	TRUE	canonical	3	241	junction_1	114.273927963665	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTATTTAAGAATAAAAATGA	NA	False	NA	NA	False	GATAAA	-45	NA	51962837	51971261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968342_51968533_51971237
transcript_3135.known	chr1	-	6227	23	FSM	ENSMUSG00000007097.15	ENSMUST00000085913.11	6227	23	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_19	23.4067518690196	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCAGGGCCTGGGTTCTTG	NA	False	NA	0	True	AATAAA	-28	NA	172125631	172099275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_172102297_172103484_172103577_172103687_172103790_172105823_172105955_172106101_172106248_172106437_172106562_172106879_172107035_172107234_172107404_172107502_172107654_172108135_172108273_172112066_172112243_172112335_172112526_172113220_172113356_172113530_172113641_172113764_172113964_172114766_172115036_172116867_172116986_172117819_172117955_172118177_172118292_172118759_172118964_172120893_172120954_172121138_172121244_172125447
transcript_31350.known	chr2	+	8509	36	FSM	ENSMUSG00000036202.17	ENSMUST00000112693.10	8509	36	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	157.508991644857	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTAGTTAGTGCCTGCCTT	NA	False	NA	24	True	ATTAAA	-19	NA	51962843	52012395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_51962879_51963148_51963266_51964258_51964338_51966092_51966190_51966992_51967121_51967204_51967300_51968321_51968533_51971237_51971331_51972676_51972816_51975038_51975191_51978659_51978778_51979535_51979701_51980185_51980297_51982053_51982117_51982291_51982393_51983514_51983602_51984600_51984675_51985833_51986015_51987928_51988037_51988368_51988519_51988864_51988965_51993444_51993710_51994557_51994601_51995446_51995650_51996912_51997013_51997649_51997770_51998451_51998604_51999203_51999288_51999362_51999415_51999922_52003013_52006259_52006407_52006679_52006758_52006846_52006963_52009028_52009183_52010271_52010381_52011003
transcript_31351.known	chr2	+	2784	6	FSM	ENSMUSG00000036202.17	ENSMUST00000152178.2	2784	6	0	0	0	0	multi-exon	FALSE	canonical	3	196	junction_2	215.141441846986	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTAGTTAGTGCCTGCC	NA	False	NA	22	True	ATTAAA	-17	NA	52002144	52012393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_52003013_52006259_52006407_52006846_52006963_52009028_52009183_52010271_52010381_52011003
transcript_31353.known	chr2	-	5239	6	FSM	ENSMUSG00000036093.8	ENSMUST00000036541.8	5239	6	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_4	32.5059994462561	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTTGGGGGTTTTTG	4755	False	NA	-3	True	AATAAA	-22	NA	52314913	52287962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_52292445_52294917_52295070_52302073_52302158_52306075_52306224_52306647_52306709_52314601
transcript_31356.known	chr2	-	4717	14	FSM	ENSMUSG00000055371.18	ENSMUST00000102759.8	4717	14	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_4	18.080359738789	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTTGAATTTGAGAGATG	NA	False	NA	NA	False	TATAAA	-12	NA	52632212	52581675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_52584950_52590016_52590184_52593113_52593265_52596410_52596466_52597929_52598018_52598154_52598238_52599607_52599703_52604829_52605017_52605699_52605770_52606436_52606584_52609708_52609808_52609913_52609990_52610895_52610981_52632072
transcript_31361.known	chr2	-	3565	26	FSM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_25	70.0256410181299	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTTGAGTAATAGTTGAAA	NA	False	NA	NA	False	AATATA	-37	NA	53081199	53028486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
transcript_31362.known	chr2	-	3251	26	FSM	ENSMUSG00000061136.17	ENSMUST00000209364.3	3251	26	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_25	95.4321874421833	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTATACCAAATATATGTTT	NA	False	NA	-39	True	NA	NA	NA	53081714	53029189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081160
transcript_31370.nnic	chr2	-	3452	26	NNC	ENSMUSG00000061136.17	novel	3251	26	NA	NA	79	262	at_least_one_novel_splicesite	FALSE	canonical	3	206	junction_9	120.929824278381	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCAGACGTCTCTACTTT	NA	False	NA	0	True	ATTAAA	-19	NA	53081635	53028921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035940_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081160
transcript_31373.nnic	chr2	-	3245	26	NNC	ENSMUSG00000061136.17	novel	3251	26	NA	NA	24	0	at_least_one_novel_splicesite	FALSE	canonical	3	206	junction_9	120.929824278381	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATATATGTTTATAGTA	NA	False	NA	-33	True	AATAAA	-6	NA	53081690	53029183	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_53029283_53030472_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035940_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081160
transcript_31374.nic	chr2	-	2783	25	ISM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	-98	2070	-1	-1367	5prime_fragment	FALSE	canonical	3	422	junction_24	68.5136720946184	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATCGGGACAGTGAAAAAGA	NA	False	NA	21	True	GATAAA	-10	NA	53081297	53030556	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_53030605_53031630_53031693_53031778_53031876_53031954_53032042_53034795_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
transcript_31381.nic	chr2	-	2382	21	ISM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	-33	6351	5	492	5prime_fragment	FALSE	canonical	3	422	junction_20	66.9779068051548	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAGAAAAAGAATATTTAA	NA	False	NA	NA	False	NA	NA	NA	53081232	53034837	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_53034892_53035244_53035383_53035631_53035749_53035835_53035928_53036105_53036221_53040649_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
transcript_31383.nic	chr2	-	1855	16	ISM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	-98	12239	-1	2336	5prime_fragment	FALSE	canonical	3	422	junction_15	67.6055881976894	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAGAAGAAGAAGAAAAAC	NA	False	NA	NA	False	NA	NA	NA	53081297	53040725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_53040784_53041690_53041842_53042457_53042567_53042969_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
transcript_31385.nic	chr2	-	1445	13	ISM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	-98	14575	-1	0	5prime_fragment	FALSE	canonical	3	422	junction_12	58.5355423842833	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGCAAGATCAAAATA	NA	False	NA	9	True	TATAAA	-25	NA	53081297	53043061	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_53043135_53043475_53043541_53043975_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
transcript_31387.nic	chr2	-	1245	11	ISM	ENSMUSG00000061136.17	ENSMUST00000239398.2	3565	26	-98	15551	-1	0	5prime_fragment	FALSE	canonical	3	422	junction_10	57.2751254909145	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATATACTTGGAATACAAAG	NA	False	NA	NA	False	AAAAAG	-31	NA	53081297	53044037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_53044085_53046634_53046998_53047904_53047930_53049274_53049329_53049569_53049691_53050787_53050899_53065027_53065045_53066397_53066429_53067364_53067446_53079980_53080113_53081034
transcript_31393.known	chr2	+	582	4	FSM	ENSMUSG00000026960.7	ENSMUST00000155517.2	582	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	228.30583776057	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAAGATGTTTACTTCAT	NA	False	NA	NA	False	NA	NA	NA	53081737	53107546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_53081893_53084295_53084350_53092930_53093064_53107306
transcript_31396.known	chr2	+	2548	4	FSM	ENSMUSG00000026960.7	ENSMUST00000028336.7	2548	4	0	0	0	0	multi-exon	FALSE	canonical	3	497	junction_2	8.2192186706253	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTGTGTAATGGCAAGG	NA	False	NA	24	True	ATTAAA	-17	NA	53082099	53109232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_53082535_53084295_53084350_53092930_53093064_53107306
transcript_314.known	chr1	-	559	3	FSM	ENSMUSG00000098234.8	ENSMUST00000182498.8	559	3	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_2	159	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGCTGTGGGCAGTAATT	NA	False	NA	-15	True	AATAAA	-12	NA	10014328	10012249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_10012617_10012834_10012943_10014244
transcript_3140.known	chr1	+	2278	7	FSM	ENSMUSG00000038034.16	ENSMUST00000039506.15	2278	7	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_3	44.2329691017408	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGTTGTGTCTTCTCTT	3743	False	NA	19	True	AATAAA	-19	NA	172139933	172147408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120_172146535_172146859_172146991_172147150
transcript_31401.known	chr2	-	684	1	FSM	ENSMUSG00000083287.5	ENSMUST00000121574.2	684	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTGTAAATGATTTGAAAA	NA	False	NA	NA	False	AATACA	-11	NA	53586816	53586132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_53586100_53586800
transcript_31402.known	chr2	-	1460	1	FSM	ENSMUSG00000075334.3	ENSMUST00000100089.3	1460	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGTAGTCATTCTGTT	NA	False	NA	NA	False	AATAAA	-29	NA	53975564	53974104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_53974100_53975600
transcript_31403.known	chr2	-	1097	3	FSM	ENSMUSG00000084938.2	ENSMUST00000126549.2	1097	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCGGGTTGTCTCTTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	57071766	57017490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_57018390_57018994_57019093_57071666
transcript_31404.known	chr2	+	5745	17	FSM	ENSMUSG00000026827.13	ENSMUST00000169687.8	5745	17	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_1	44.6148447828747	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATTTGTTGGCATTTTGA	NA	False	NA	NA	False	AATAAA	-15	NA	57127689	57260731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_57128001_57157984_57158095_57179856_57180029_57194372_57194498_57195819_57195918_57196943_57197108_57228858_57229024_57230075_57230221_57235242_57235437_57245471_57245607_57245771_57245948_57246530_57246663_57247666_57247826_57254042_57254156_57254261_57254341_57254516_57254616_57257363
transcript_31406.known	chr2	+	5620	17	FSM	ENSMUSG00000026827.13	ENSMUST00000028167.3	5620	17	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_2	27.9815089612766	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATTTGTTGGCATTTTGA	NA	False	NA	NA	False	AATAAA	-15	NA	57128393	57260731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_57128580_57157984_57158095_57179856_57180029_57194372_57194498_57195819_57195918_57196943_57197108_57228858_57229024_57230075_57230221_57235242_57235437_57245471_57245607_57245771_57245948_57246530_57246663_57247666_57247826_57254042_57254156_57254261_57254341_57254516_57254616_57257363
transcript_31408.known	chr2	-	2394	11	FSM	ENSMUSG00000026836.16	ENSMUST00000056376.12	2394	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	11.677328461596	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAATCAGCAATATCGGCTG	NA	False	NA	NA	False	NA	NA	NA	58457169	58337160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_58337686_58338325_58338457_58348896_58349095_58352892_58353169_58358525_58358673_58364184_58364285_58367616_58367829_58369676_58369941_58390495_58390570_58427789_58427886_58456798
transcript_3141.nic	chr1	+	2482	6	ISM	ENSMUSG00000038034.16	ENSMUST00000039506.15	2278	7	-48	4	-48	2	intron_retention	FALSE	canonical	3	675	junction_3	48.3553513067582	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGAGGCCTGTTGTGTCTTC	3695	False	NA	15	True	AATAAA	-15	NA	172139885	172147404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_172140161_172143717_172144096_172144921_172145384_172145603_172146012_172146120_172146535_172146859
transcript_31411.known	chr2	-	463	3	FSM	ENSMUSG00000087455.8	ENSMUST00000155111.2	463	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTATTAGTAGCGACAGG	NA	False	NA	NA	False	NA	NA	NA	59217815	59214136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_59214299_59215031_59215155_59217637
transcript_31414.known	chr2	-	2072	11	FSM	ENSMUSG00000026988.16	ENSMUST00000028368.14	2072	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_10	21.0228447171167	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712928	59682707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712744
transcript_31415.nic	chr2	-	2017	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	17.6150503831241	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712950	59682707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712821
transcript_31417.nnic	chr2	-	2066	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-27	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_10	20.6164982477626	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712962	59682707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712821
transcript_31419.nic	chr2	-	2020	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_10	14.3488675511345	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712950	59682707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712821
transcript_31421.nnic	chr2	-	2069	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-27	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_10	18.0765040867973	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCAATGCCTAAGTGTGTT	NA	False	NA	0	True	AATAAA	-20	NA	59712962	59682707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712821
transcript_31423.nic	chr2	-	1888	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-15	-129	combination_of_known_junctions	FALSE	canonical	3	22	junction_3	17.6150503831241	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTCAATTATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	59712950	59682836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_59683306_59688953_59689095_59691904_59692082_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712821
transcript_31425.nic	chr2	-	1964	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-11	-129	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	18.5580171354593	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTCAATTATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	59712946	59682836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708895_59712744
transcript_31427.nic	chr2	-	2005	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-15	-129	combination_of_known_junctions	FALSE	canonical	3	9	junction_10	19.790149064623	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTCAATTATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	59712950	59682836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712744
transcript_31428.nnic	chr2	-	1940	11	NIC	ENSMUSG00000026988.16	novel	2072	11	NA	NA	-27	-129	combination_of_known_splicesites	FALSE	canonical	3	16	junction_10	18.0765040867973	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGTCAATTATCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	59712962	59682836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_59683306_59688953_59689095_59691904_59692085_59692963_59693071_59693160_59693202_59694645_59694680_59703559_59703654_59704582_59704673_59707010_59707196_59708473_59708932_59712821
transcript_31431.nnic	chr2	-	2996	16	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39354	-11963	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_12	34.6288255006657	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGAATTCTTAATATAATTC	1524	False	NA	0	True	NA	NA	NA	59881060	59767028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_59767096_59773105_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59790164_59790450_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59814125_59814315_59831849_59831901_59836386_59836534_59880905
transcript_31438.nnic	chr2	-	2456	13	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39354	10701	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_5	33.5446427251142	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCCGTGCGCTGGGCAG	1524	False	NA	NA	False	TATAAA	-9	NA	59881060	59773104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_59773168_59773281_59773375_59778430_59778642_59787973_59788083_59788775_59788837_59792364_59792975_59798970_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59831849_59831901_59836386_59836534_59880905
transcript_31439.nnic	chr2	-	1466	8	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39354	10016	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_4	38.7940664514141	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTTTGACCAGTGAATTG	1524	False	NA	NA	False	AATAAA	-20	NA	59881060	59799002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59814125_59814315_59831849_59831901_59836386_59836534_59880905
transcript_3144.known	chr1	+	1313	4	FSM	ENSMUSG00000026548.5	ENSMUST00000027830.5	1313	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCATCCTGTCTTTTTATT	NA	False	NA	NA	False	NA	NA	NA	172302924	172306142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_172303107_172303699_172304042_172304772_172305046_172305626
transcript_31440.nnic	chr2	-	1271	7	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39354	10016	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_4	42.5819471398646	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTTTGACCAGTGAATTG	1524	False	NA	NA	False	AATAAA	-20	NA	59881060	59799002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_59799367_59799561_59799763_59807702_59807897_59808886_59809046_59831849_59831901_59836386_59836534_59880905
transcript_31441.nnic	chr2	-	1277	7	NNC	ENSMUSG00000026987.17	novel	7895	35	NA	NA	39354	10016	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_4	34.7407061912487	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTTTGACCAGTGAATTG	1524	False	NA	NA	False	AATAAA	-20	NA	59881060	59799002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_59799367_59799561_59799763_59807702_59807897_59808886_59809052_59831849_59831901_59836386_59836534_59880905
transcript_31445.known	chr2	-	406	2	FSM	ENSMUSG00000026987.17	ENSMUST00000134908.2	406	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCCTTTAATTGACTTCTG	9203	False	NA	NA	False	AATAAA	-16	NA	60040092	60036937	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_60037308_60040056
transcript_31446.known	chr2	-	693	3	FSM	ENSMUSG00000026987.17	ENSMUST00000151756.2	693	3	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	9.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCATCTCTTATTATTGAC	9150	False	NA	NA	False	ATTAAA	-18	NA	60040145	60036469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_60036905_60037138_60037308_60040056
transcript_31455.known	chr2	+	2271	11	FSM	ENSMUSG00000026977.18	ENSMUST00000102747.8	2271	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	141.271405457722	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGATCTGTGAACATGTT	NA	False	NA	NA	False	AAGAAA	-11	NA	60040416	60078317	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_60040429_60055113_60055215_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
transcript_31457.known	chr2	+	3594	10	FSM	ENSMUSG00000026977.18	ENSMUST00000102748.11	3594	10	0	0	0	0	multi-exon	FALSE	canonical	3	327	junction_5	27.2519112479596	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGAACTTTTTCCTTTTA	NA	False	NA	27	True	AATAAA	-24	NA	60040230	60079555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_60040429_60059261_60059427_60060027_60060224_60062543_60062712_60064242_60065342_60067097_60067271_60071286_60071397_60073900_60074015_60075555_60075605_60078233
transcript_31469.known	chr2	-	1354	6	FSM	ENSMUSG00000060703.13	ENSMUST00000074606.11	1354	6	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	6.41872261435249	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTGCCTGGTCTTCTT	3932	False	NA	-4	True	AATAAA	-15	NA	60114832	60082336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_60082836_60085414_60085442_60087376_60087548_60088226_60088344_60102445_60102557_60114403
transcript_3147.known	chr1	+	1586	5	FSM	ENSMUSG00000026547.16	ENSMUST00000111230.8	1586	5	0	0	0	0	multi-exon	FALSE	canonical	3	984	junction_4	118.904373342615	598	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTGTTTCTAGGGCC	NA	False	NA	29	True	AATAAA	-26	NA	172327613	172334947	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_172327900_172332686_172332895_172333327_172333503_172333752_172333856_172334133
transcript_31472.known	chr2	-	6901	35	FSM	ENSMUSG00000026980.16	ENSMUST00000112533.8	6901	35	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_19	109.794243708662	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAATCTCCTTGGCTCAG	NA	False	NA	-11	True	AATAAA	-20	NA	60213647	60122446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_60124283_60129390_60129559_60131298_60131422_60133921_60134072_60136673_60136843_60138482_60138710_60141952_60142148_60144500_60144618_60146432_60146601_60148651_60148818_60152041_60152269_60154162_60154293_60158130_60158292_60158733_60158840_60160319_60160460_60161069_60161153_60161420_60161489_60162662_60162839_60163268_60163301_60164789_60164909_60168638_60168708_60170496_60170579_60178696_60178840_60180201_60180402_60182399_60182570_60182697_60182787_60183265_60183377_60184748_60184907_60185712_60185905_60187620_60187762_60188811_60188923_60195354_60195520_60199102_60199274_60206201_60206574_60213481
transcript_31473.nic	chr2	-	2166	6	ISM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	-92	62497	-20	-62497	5prime_fragment	FALSE	canonical	3	533	junction_4	45.5174691739336	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAATGGAACAACGAAAGTG	NA	False	NA	NA	False	AAAAAG	-8	NA	60213667	60186600	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_60187762_60188811_60188923_60195354_60195520_60199102_60199274_60206201_60206574_60213481
transcript_31474.nic	chr2	-	1549	2	ISM	ENSMUSG00000026980.16	ENSMUST00000028362.9	5172	35	-92	81107	-20	-81107	5prime_fragment	FALSE	canonical	3	663	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTACTTTACTCTAAGAATT	NA	False	NA	NA	False	NA	NA	NA	60213667	60205210	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_60206574_60213481
transcript_31476.nnic	chr2	+	1450	6	NNC	ENSMUSG00000087283.2	novel	566	3	NA	NA	-27278	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	82.7342734300604	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGTGGTATACCCTTAT	2608	False	NA	NA	False	NA	NA	NA	60214590	60242923	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_60214668_60221003_60221204_60224249_60224969_60241980_60242062_60242190_60242353_60242712
transcript_31477.nnic	chr2	+	619	5	NNC	ENSMUSG00000087283.2	novel	566	3	NA	NA	-27304	-5	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_4	64.9398760393027	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAGTGTGGTGGTATACC	2582	False	NA	NA	False	NA	NA	NA	60214564	60242918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_60214668_60241980_60242062_60242190_60242353_60242508_60242576_60242712
transcript_31479.nnic	chr2	+	557	4	NNC	ENSMUSG00000087283.2	novel	566	3	NA	NA	-27304	0	at_least_one_novel_splicesite	FALSE	canonical	3	54	junction_1	58.0344725141876	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGTGGTATACCCTTAT	2582	False	NA	NA	False	NA	NA	NA	60214564	60242923	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_60214668_60241980_60242062_60242190_60242353_60242712
transcript_31480.nnic	chr2	+	741	4	NNC	ENSMUSG00000087283.2	novel	566	3	NA	NA	-113	-5	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_3	74.2473344078201	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAAGTGTGGTGGTATACC	9233	False	NA	NA	False	NA	NA	NA	60241755	60242918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_60242062_60242190_60242353_60242508_60242576_60242712
transcript_31481.known	chr2	+	566	3	FSM	ENSMUSG00000087283.2	ENSMUST00000131457.2	566	3	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_2	3	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGGTGGTATACCCTTAT	9346	False	NA	NA	False	NA	NA	NA	60241868	60242923	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_60242062_60242190_60242353_60242712
transcript_31483.known	chr2	-	4436	14	FSM	ENSMUSG00000026970.17	ENSMUST00000028347.13	4436	14	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_13	80.5716264093541	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTCCTGTCGGTTTTTTG	NA	False	NA	0	True	AATAAA	-17	NA	60793536	60580536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_60583327_60584073_60584159_60585759_60585841_60586779_60586891_60589147_60589199_60592396_60592491_60592613_60592664_60593579_60593687_60610074_60610155_60612204_60612363_60623032_60623125_60628027_60628087_60672640_60672817_60793034
transcript_31487.known	chr2	+	2039	8	FSM	ENSMUSG00000064289.16	ENSMUST00000112495.8	2039	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	9.53190132434987	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTCTGATGGGATTTA	NA	False	NA	NA	False	AATAAA	-30	NA	61423420	61484515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_61423553_61443994_61444143_61457249_61457359_61458064_61458184_61474058_61474130_61474650_61474767_61480081_61480633_61483722
transcript_31501.known	chr2	+	1541	12	FSM	ENSMUSG00000026914.16	ENSMUST00000028278.14	1541	12	0	0	0	0	multi-exon	FALSE	canonical	3	1717	junction_5	150.997564426748	2050	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCCGAGGTCTTTTTG	8547	False	NA	31	True	AATAAA	-17	NA	61542037	61630720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_61542218_61550787_61550916_61553053_61553106_61590979_61591052_61591318_61591439_61594180_61594252_61595192_61595344_61607016_61607125_61614176_61614252_61615777_61615904_61627738_61627802_61630325
transcript_3151.known	chr1	+	1559	1	FSM	ENSMUSG00000104351.2	ENSMUST00000195877.2	1559	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	172340815	172342374	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_172340800_172342400
transcript_31518.known	chr2	+	540	2	FSM	ENSMUSG00000026914.16	ENSMUST00000135265.2	540	2	0	0	0	0	multi-exon	FALSE	canonical	3	2185	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTCCCTCTGCTCCCCA	8595	False	NA	NA	False	AAAACA	-21	NA	61542085	61551195	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_61542218_61550787
transcript_31519.known	chr2	-	5268	26	FSM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_12	33.8302586451833	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACCAAAACACAAGCATGTT	NA	False	NA	NA	False	AATAAA	-18	NA	62242575	62160416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959_62187059_62187303_62187352_62189127_62189250_62189620_62189675_62190628_62190697_62190952_62191061_62193005_62193051_62195271_62195408_62203098_62203212_62204709_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
transcript_3152.known	chr1	+	1908	12	FSM	ENSMUSG00000026546.17	ENSMUST00000085894.12	1908	12	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_1	6.26415751889171	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACAGCTCCACTTCACTGC	5422	False	NA	6	True	ATTAAA	-19	NA	172348610	172373437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_172348749_172355356_172355483_172357376_172357520_172359647_172359793_172360097_172360269_172361512_172361692_172362777_172362908_172366045_172366193_172368053_172368168_172368751_172368946_172372658_172372884_172373241
transcript_31524.nic	chr2	-	1873	9	ISM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	55463	1559	939	-1559	3prime_fragment	FALSE	canonical	3	241	junction_6	20.4110111214511	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAATGGGTTATGTCTTGA	NA	False	NA	-3	True	AGTAAA	-20	NA	62187112	62161975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959
transcript_31525.nic	chr2	-	1846	9	ISM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	55407	1642	883	-1642	3prime_fragment	FALSE	canonical	3	241	junction_6	20.4110111214511	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAATGTTTTGTGTTATT	NA	False	NA	-39	True	ATTAAA	-39	NA	62187168	62162058	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_62163064_62164599_62164674_62164940_62165014_62175399_62175465_62178161_62178262_62178844_62178900_62182465_62182661_62184882_62184953_62186959
transcript_31526.nic	chr2	-	1198	9	ISM	ENSMUSG00000035000.9	ENSMUST00000047812.8	5268	26	109	44182	-101	0	5prime_fragment	FALSE	canonical	3	219	junction_8	22.5596431709369	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGCTTTCTCTGATTTCT	NA	False	NA	NA	False	AATGAA	-21	NA	62242466	62204598	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_62204871_62208547_62208669_62209440_62209514_62209620_62209674_62215517_62215587_62216774_62216867_62217408_62217505_62241558_62241644_62242129
transcript_31530.known	chr2	+	3330	8	FSM	ENSMUSG00000026893.5	ENSMUST00000028257.3	3330	8	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_6	22.3332825667003	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGCTCCAATTCCCAGACT	NA	False	NA	NA	False	TTTAAA	-18	NA	62494628	62524453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_62494804_62502620_62502795_62509499_62509570_62516308_62516353_62516620_62516769_62520304_62520419_62520734_62520794_62521907
transcript_31537.known	chr2	-	1986	14	FSM	ENSMUSG00000026888.15	ENSMUST00000028252.14	1986	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	3.05182068075037	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCGTGTTCTTGTGTGAT	NA	False	NA	NA	False	ATTAAA	-17	NA	64853126	64742819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_64743198_64745059_64745154_64747172_64747261_64747378_64747452_64747542_64747660_64753880_64753962_64760243_64760340_64760529_64760641_64763563_64763702_64766760_64766836_64768712_64768835_64783905_64784063_64851430_64851564_64852803
transcript_31541.known	chr2	+	10672	7	FSM	ENSMUSG00000044647.17	ENSMUST00000122912.8	10672	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	4.6696419087073	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTATTGCGTTTTTATT	5603	False	NA	11	True	AGTAAA	-19	NA	65676110	65861890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_65676229_65690874_65691037_65708308_65708397_65779302_65779474_65832646_65832907_65849783_65850081_65852314
transcript_31542.known	chr2	+	4495	6	FSM	ENSMUSG00000044647.17	ENSMUST00000053910.10	4495	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	3.18747549010185	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAGAGAAGAGAATTTTG	5678	False	NA	NA	False	NA	NA	NA	65676185	65855950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_65676229_65708308_65708397_65779302_65779474_65832646_65832907_65849783_65850081_65852314
transcript_31546.known	chr2	-	3536	18	FSM	ENSMUSG00000027030.16	ENSMUST00000102715.4	3536	18	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_11	9.06874933675377	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGAGTCTCCTCCATTTCG	NA	False	NA	NA	False	AATAAA	-19	NA	68302612	68040788	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_68042338_68051247_68051313_68093578_68093648_68097382_68097436_68137384_68137453_68139335_68139399_68144707_68144738_68144824_68144948_68189157_68189224_68189329_68189379_68196417_68196552_68198740_68198843_68199339_68199450_68221257_68221314_68222454_68222597_68228767_68228877_68240372_68240486_68301977
transcript_3155.nnic	chr1	+	2552	9	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	-92	-326	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	39.9591588374931	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTGAGATATCATTCTTC	NA	False	NA	11	True	NA	NA	NA	173246669	173293272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_173247122_173248136_173248253_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
transcript_31552.known	chr2	-	1527	7	FSM	ENSMUSG00000005233.17	ENSMUST00000112320.8	1527	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	307.891214554751	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	-10	True	NA	NA	NA	69036479	69024238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036173
transcript_31554.known	chr2	-	1352	7	FSM	ENSMUSG00000005233.17	ENSMUST00000005365.15	1352	7	0	0	0	0	multi-exon	FALSE	canonical	3	811	junction_6	34.6121365997536	685	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTAACTCTCTCTTC	NA	False	NA	-10	True	NA	NA	NA	69036538	69024238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_69024890_69027478_69027578_69030328_69030434_69032915_69033063_69035199_69035266_69035369_69035523_69036407
transcript_31559.known	chr2	+	1468	12	FSM	ENSMUSG00000063145.11	ENSMUST00000074963.9	1468	12	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_4	9.81144550053239	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATGTTTTGAAAGTATTA	NA	False	NA	6	True	AATAAA	-20	NA	69477551	69497915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_69477687_69479365_69479449_69483125_69483192_69484406_69484457_69484589_69484718_69485842_69485979_69487240_69487337_69491379_69491443_69493369_69493505_69495369_69495454_69497284_69497309_69497447
transcript_3156.nic	chr1	+	2572	9	NIC	ENSMUSG00000037860.16	novel	2839	12	NA	NA	-88	-326	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	38.1966539764938	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTGAGATATCATTCTTC	NA	False	NA	11	True	NA	NA	NA	173246673	173293272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_173247122_173255324_173255465_173280393_173280515_173281789_173281880_173282899_173283182_173287263_173287416_173289472_173289887_173291424_173291614_173292536
transcript_31561.known	chr2	+	1124	11	FSM	ENSMUSG00000063145.11	ENSMUST00000134659.8	1124	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	27.5109069279804	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATAGGCTTGGGATATTT	NA	False	NA	NA	False	ATTAAA	-18	NA	69477514	69497662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_69477687_69479365_69479449_69483125_69483192_69484406_69484457_69485842_69485979_69487240_69487337_69491379_69491443_69493369_69493505_69495369_69495454_69497284_69497309_69497447
transcript_31566.known	chr2	-	2865	14	FSM	ENSMUSG00000027086.17	ENSMUST00000073152.13	2865	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	59.5439273976854	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTATGGCCCACCATATA	7965	False	NA	NA	False	NA	NA	NA	69542950	69517158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_69517485_69520406_69520522_69521578_69521709_69524212_69524327_69524859_69524992_69527186_69527316_69530467_69530583_69532706_69533194_69534596_69534729_69535765_69535877_69537651_69538051_69538854_69538981_69541837_69541907_69542470
transcript_31568.nic	chr2	+	1523	15	NIC	ENSMUSG00000042133.17	novel	6127	14	NA	NA	5	-225	combination_of_known_junctions	FALSE	canonical	3	54	junction_1	118.295461986209	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGAAAAAAATAACAGATCA	NA	False	NA	14	True	AATAAA	-32	NA	69553153	69579667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_69553302_69561834_69561925_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
transcript_31570.nic	chr2	+	2812	15	NIC	ENSMUSG00000042133.17	novel	6127	14	NA	NA	5	1064	combination_of_known_junctions	FALSE	canonical	3	54	junction_1	118.295461986209	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACACTTTGGTGTAATACT	NA	False	NA	NA	False	AATAAA	-20	NA	69553153	69580956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_69553302_69561834_69561925_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
transcript_31571.known	chr2	+	6127	14	FSM	ENSMUSG00000042133.17	ENSMUST00000090858.10	6127	14	0	0	0	0	multi-exon	TRUE	canonical	3	282	junction_1	41.7748260879032	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGATTGTGCTTTTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	69553148	69584356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_69553302_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
transcript_31575.known	chr2	+	6245	14	FSM	ENSMUSG00000042133.17	ENSMUST00000040915.15	6245	14	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	98.4826299525295	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGATTGTGCTTTTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	69553436	69584356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_69553708_69562089_69562158_69562540_69562619_69562723_69562799_69563161_69563270_69563532_69563578_69564634_69564723_69566211_69566242_69566332_69566473_69571829_69572038_69573956_69574125_69576371_69576460_69579304_69579442_69579615
transcript_31582.known	chr2	-	1844	9	FSM	ENSMUSG00000070883.4	ENSMUST00000094942.4	1844	9	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_5	1.58113883008419	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGTTTGATTCTTTGCA	NA	False	NA	NA	False	AATAAA	-18	NA	69619919	69588376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_69588810_69592065_69592231_69602275_69602469_69606473_69606614_69608403_69608561_69611982_69612177_69612288_69612463_69617503_69617731_69619758
transcript_31583.known	chr2	+	2260	4	FSM	ENSMUSG00000027088.11	ENSMUST00000028494.9	2260	4	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	4.49691252107735	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCTTCTGAAATCTTTT	NA	False	NA	26	True	AATAAA	-16	NA	69619979	69627567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_69620301_69620629_69620666_69622680_69622836_69625819
transcript_31585.known	chr2	+	667	4	FSM	ENSMUSG00000027088.11	ENSMUST00000151298.8	667	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	45.0653845971483	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAAATATTTGAGAGATG	NA	False	NA	NA	False	GGGGCT	-25	NA	69619966	69625997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_69620301_69620629_69620666_69622716_69622836_69625819
transcript_31587.known	chr2	+	2194	4	FSM	ENSMUSG00000027088.11	ENSMUST00000112266.8	2194	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	37.7918274528002	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCTTCTGAAATCTTTT	NA	False	NA	26	True	AATAAA	-16	NA	69619993	69627567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_69620249_69620629_69620666_69622680_69622836_69625819
transcript_31594.known	chr2	+	2001	12	FSM	ENSMUSG00000068882.14	ENSMUST00000090852.11	2001	12	0	0	0	0	multi-exon	FALSE	canonical	3	1543	junction_7	118.150135613357	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGCCAAACATT	NA	False	NA	-38	True	NA	NA	NA	69691905	69702130	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_69692057_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
transcript_3160.known	chr1	-	2636	10	FSM	ENSMUSG00000026526.15	ENSMUST00000027810.14	2636	10	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_3	99.2506491566916	1406	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCAATAGACTAATTTTTAT	792	False	NA	NA	False	AATAAA	-21	NA	175453201	175427939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_175429133_175431503_175431658_175433620_175433749_175435382_175435587_175437202_175437369_175439712_175439896_175442302_175442480_175444094_175444206_175446616_175446752_175453016
transcript_31600.known	chr2	+	2088	12	FSM	ENSMUSG00000068882.14	ENSMUST00000166411.8	2088	12	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	503.342431457735	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCTCACTTTGGACATA	NA	False	NA	22	True	ATTAAA	-23	NA	69691905	69702190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_69692084_69693567_69693660_69696533_69696638_69696831_69697007_69697615_69697724_69697795_69697897_69699122_69699195_69699485_69699526_69700223_69700365_69700728_69700925_69701021_69701178_69701465
transcript_31610.known	chr2	-	968	7	FSM	ENSMUSG00000051730.16	ENSMUST00000060447.13	968	7	0	0	0	0	multi-exon	FALSE	canonical	3	432	junction_3	75.5058864519111	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACCATTTTCTCTTTTCTT	6806	False	NA	-5	True	AATAAA	-34	NA	69715959	69701541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_69701661_69702075_69702126_69704227_69704280_69709445_69709529_69711110_69711293_69711640_69711756_69715592
transcript_31611.known	chr2	-	851	6	FSM	ENSMUSG00000051730.16	ENSMUST00000142127.8	851	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	209.013492387453	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTACTTGTCTCTAGCAC	6824	False	NA	-21	True	AATAAA	-18	NA	69715941	69701557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_69701661_69702075_69702126_69704227_69704280_69711110_69711293_69711640_69711756_69715592
transcript_31612.known	chr2	-	2090	4	FSM	ENSMUSG00000051730.16	ENSMUST00000135487.2	2090	4	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_1	42.2926313518876	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGCAAAAAGAAAAAGAAAGT	6817	False	NA	NA	False	NA	NA	NA	69715948	69708091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_69709529_69711110_69711293_69711640_69711756_69715592
transcript_31618.known	chr2	-	4280	20	FSM	ENSMUSG00000041997.17	ENSMUST00000038584.9	4280	20	0	0	0	0	multi-exon	TRUE	canonical	3	163	junction_17	29.5425886295749	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTGTGAAAATTACACTCA	NA	False	NA	NA	False	AATAAA	-22	NA	70656072	70542750	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_70544510_70546955_70547064_70548125_70548238_70551417_70551554_70551901_70552072_70552250_70552433_70554345_70554428_70555823_70555922_70568764_70568832_70572397_70572587_70575846_70575984_70576277_70576389_70579578_70579672_70580778_70580869_70582578_70582675_70584783_70584831_70587817_70587894_70600347_70600420_70617220_70617340_70655536
transcript_31622.known	chr2	+	2238	10	FSM	ENSMUSG00000014959.13	ENSMUST00000028509.11	2238	10	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_9	56.2121203045731	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGCGTGTACTTCATGTGT	NA	False	NA	38	True	AATAAA	-38	NA	70491919	70522087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526_70519647_70521001
transcript_31624.known	chr2	+	1196	9	FSM	ENSMUSG00000014959.13	ENSMUST00000112205.2	1196	9	0	0	0	0	multi-exon	FALSE	canonical	3	630	junction_6	27.9463772249642	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGAGGCCTCCCGTTCAGTC	NA	False	NA	9	True	AATAAA	-18	NA	70491933	70519704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_70492105_70506808_70506890_70508242_70508447_70508871_70508959_70509775_70509907_70513240_70513374_70514323_70514448_70518729_70518817_70519526
transcript_31628.nnic	chr2	+	2020	15	NNC	ENSMUSG00000041966.19	novel	1905	15	NA	NA	-9	-1464	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_14	52.7831528471898	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTCCATGGTTGTCCAC	NA	False	NA	NA	False	NA	NA	NA	70886078	70924738	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132_70920278_70924541
transcript_31629.known	chr2	+	1905	15	FSM	ENSMUSG00000041966.19	ENSMUST00000064141.12	1905	15	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_14	54.6553207074357	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGGCTTTATGACTATCC	NA	False	NA	12	True	AATAAA	-21	NA	70886124	70929486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132_70920278_70929358
transcript_31631.nic	chr2	+	2294	14	NIC	ENSMUSG00000041966.19	novel	7739	14	NA	NA	-9	329	combination_of_known_junctions	TRUE	canonical	3	27	junction_1	53.8095479968128	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACATATCAATTCTAGT	NA	False	NA	0	True	NA	NA	NA	70886078	70920951	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_70886261_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132
transcript_31632.known	chr2	+	7739	14	FSM	ENSMUSG00000041966.19	ENSMUST00000154704.8	7739	14	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_11	23.2697075602773	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGTGTGTATACATATGT	NA	False	NA	5	True	NA	NA	NA	70886087	70926202	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132
transcript_31634.nic	chr2	+	2188	13	NIC	ENSMUSG00000041966.19	novel	7739	14	NA	NA	-9	329	combination_of_known_junctions	FALSE	canonical	3	21	junction_7	73.4886612569132	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACATATCAATTCTAGT	NA	False	NA	0	True	NA	NA	NA	70886078	70920951	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_70886261_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70912254_70912398_70914768_70914879_70916882_70916971_70917658_70917743_70918690_70918847_70920132
transcript_31640.nic	chr2	+	1405	10	ISM	ENSMUSG00000041966.19	ENSMUST00000102701.5	1703	13	-117	4055	-9	1131	5prime_fragment	FALSE	canonical	3	195	junction_1	18.2357673234921	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGACATTGTTGTTTTCA	NA	False	NA	NA	False	ATTAAA	-19	NA	70886078	70914933	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_70886464_70886838_70886943_70890696_70890788_70893702_70893840_70903464_70903544_70905790_70905881_70908403_70908509_70908817_70908924_70912254_70912398_70914768
transcript_31641.nic	chr2	-	2151	10	NIC	ENSMUSG00000041975.18	novel	2347	10	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_7	29.4505234814822	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTGTTGGAGTTTT	NA	False	NA	0	True	NA	NA	NA	70885959	70794904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70810720_70810771_70812198_70812312_70823827_70823920_70848563_70848719_70885714
transcript_31642.known	chr2	-	2347	10	FSM	ENSMUSG00000041975.18	ENSMUST00000112186.9	2347	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_7	14.8332292963476	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTGTTGGAGTTTT	NA	False	NA	0	True	NA	NA	NA	70885927	70794904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70810720_70810771_70812198_70812540_70823827_70823920_70848563_70848719_70885714
transcript_31648.known	chr2	-	2297	9	FSM	ENSMUSG00000041975.18	ENSMUST00000112179.9	2297	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	32.9393381840012	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTTTTGTTGGAGTTTT	NA	False	NA	0	True	NA	NA	NA	70885927	70794904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_70796024_70796791_70796858_70797393_70797501_70803596_70803737_70806417_70806482_70812198_70812540_70823827_70823920_70848563_70848719_70885714
transcript_31652.known	chr2	+	2548	18	FSM	ENSMUSG00000027012.16	ENSMUST00000112136.2	2548	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	255.153119100769	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCACTTTTACTTTTTGA	NA	False	NA	24	True	AATAAA	-26	NA	71042335	71093647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058170_71058189_71058943_71059035_71063992_71064053_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092994
transcript_31654.known	chr2	+	2466	16	FSM	ENSMUSG00000027012.16	ENSMUST00000112138.8	2466	16	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	83.3153580613376	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTCTCAAATTTTCACT	NA	False	NA	12	True	AATAAA	-14	NA	71042101	71093635	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_71042190_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
transcript_31655.known	chr2	+	2631	16	FSM	ENSMUSG00000027012.16	ENSMUST00000081710.12	2631	16	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.1836893389456	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCACTTTTACTTTTTGA	NA	False	NA	24	True	AATAAA	-26	NA	71042177	71093647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
transcript_31658.known	chr2	+	2097	17	FSM	ENSMUSG00000027012.16	ENSMUST00000100028.10	2097	17	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_4	189.242197659507	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCATGGATAATCTGGGTT	NA	False	NA	NA	False	ATTAAA	-18	NA	71042327	71093203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_71042419_71044782_71044900_71049644_71049763_71058943_71059035_71063992_71064053_71066258_71066375_71077032_71077129_71077356_71077520_71077632_71077733_71078164_71078291_71079130_71079278_71079652_71079767_71080062_71080197_71081185_71081331_71088427_71088569_71091165_71091292_71092991
transcript_31661.known	chr2	-	6351	18	FSM	ENSMUSG00000027010.17	ENSMUST00000151937.8	6351	18	0	0	0	0	multi-exon	TRUE	canonical	3	27	junction_16	36.6501273382513	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCGTGTACATCTCTTG	NA	False	NA	NA	False	NA	NA	NA	71198093	71101406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71174233_71174377_71196870_71196925_71197856
transcript_31664.nnic	chr2	-	2655	17	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	5561	-53	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_16	39.6401292095523	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCCTCCTGATGAC	NA	False	NA	-5	True	AATAAA	-16	NA	71168815	71105086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71158777_71158882_71163948_71164065_71168501
transcript_31665.nnic	chr2	-	2766	16	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5256	420	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_15	22.4311291636323	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATGGAGTTGGTTTCCTT	NA	False	NA	-3	True	AATAAA	-17	NA	71164440	71104613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71164384
transcript_31667.nnic	chr2	-	2293	16	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5256	-53	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_15	22.4311291636323	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCCTCCTGATGAC	NA	False	NA	-5	True	AATAAA	-16	NA	71164440	71105086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71164384
transcript_31668.nnic	chr2	-	2285	16	NNC	ENSMUSG00000027010.17	novel	6351	18	NA	NA	-5299	-53	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_15	28.2830141408035	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCCTCCTGATGAC	NA	False	NA	-5	True	AATAAA	-16	NA	71164483	71105086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_71105698_71106775_71106867_71106984_71107144_71109859_71109999_71112813_71112955_71123703_71123785_71124015_71124069_71127008_71127168_71128913_71128996_71138399_71138485_71141806_71141901_71142768_71142908_71145326_71145474_71154319_71154460_71163948_71164065_71164435
transcript_31671.nic	chr2	-	679	5	NIC	ENSMUSG00000027010.17	novel	550	3	NA	NA	-54	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	8.57321409974112	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGCTCTAGAATTTCTA	NA	False	NA	NA	False	AATAAA	-17	NA	71197931	71160083	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_71160375_71163948_71164065_71174233_71174377_71196870_71196925_71197856
transcript_31673.known	chr2	+	1576	11	FSM	ENSMUSG00000027018.12	ENSMUST00000028408.3	1576	11	0	0	0	0	multi-exon	FALSE	canonical	3	1873	junction_8	150.054156890104	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAACTTTGCATTTGAGTT	5118	False	NA	59	True	GATAAA	-16	NA	71219603	71271966	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_71219649_71220246_71220343_71239331_71239408_71240486_71240608_71250518_71250699_71250933_71251056_71251554_71251660_71251976_71252084_71264398_71264551_71269039_71269157_71271511
transcript_31675.known	chr2	+	1321	10	FSM	ENSMUSG00000041921.17	ENSMUST00000037210.9	1321	10	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_6	11.0565326201412	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTATTGTGTCCAGTCT	NA	False	NA	NA	False	NA	NA	NA	71283619	71355535	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_71283743_71337128_71337287_71340084_71340235_71341755_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
transcript_31677.known	chr2	+	2770	9	FSM	ENSMUSG00000041921.17	ENSMUST00000139045.8	2770	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_5	11.7147076361299	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATTGTGTCCAGTCTGTA	NA	False	NA	NA	False	NA	NA	NA	71283694	71355538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_71283743_71337128_71337287_71340084_71341905_71342469_71342513_71345980_71346145_71352876_71352975_71354145_71354194_71355060_71355140_71355226
transcript_31679.known	chr2	+	1898	6	FSM	ENSMUSG00000041921.17	ENSMUST00000123858.8	1898	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	26.2022899762597	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTGAAAAAAAAAAAAAGGCT	NA	False	NA	NA	False	NA	NA	NA	71283676	71346299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_71283743_71337128_71337287_71340084_71340235_71341755_71341905_71342469_71342513_71344967
transcript_31681.nnic	chr2	+	715	4	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	-40	0	at_least_one_novel_splicesite	TRUE	canonical	2	11	junction_1	9.8770215933527	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAAGACTCGGTTGCT	NA	False	NA	5	True	ATTAAA	-18	NA	71549720	71561310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_71549853_71553630_71553841_71560693_71560778_71561021
transcript_31682.nnic	chr2	+	702	4	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	10.8730042868667	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAAGACTCGGTTGCT	NA	False	NA	5	True	ATTAAA	-18	NA	71549730	71561310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_71549853_71553633_71553841_71560693_71560778_71561021
transcript_31683.nnic	chr2	+	701	4	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	1409	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	13.0979218029257	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAAGACTCGGTTGCT	NA	False	NA	5	True	ATTAAA	-18	NA	71551169	71561310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_71551288_71553630_71553841_71560693_71560778_71561021
transcript_31685.nnic	chr2	+	1158	3	NNC	ENSMUSG00000064263.7	novel	641	4	NA	NA	9140	0	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_1	13	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAAGACTCGGTTGCT	NA	False	NA	5	True	ATTAAA	-18	NA	71558900	71561310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_71559686_71560693_71560778_71561021
transcript_31687.known	chr2	+	4156	26	FSM	ENSMUSG00000027111.17	ENSMUST00000112101.8	4156	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	107.199447759772	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCTTTATAAACATGCAAG	NA	False	NA	NA	False	NA	NA	NA	71617283	71687115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_71617353_71617427_71617665_71646973_71647099_71648824_71648905_71650342_71650599_71652781_71652914_71655852_71656064_71656733_71656928_71657066_71657156_71658239_71658359_71664039_71664139_71664352_71664415_71668611_71668773_71668921_71669066_71670905_71671022_71671129_71671320_71671410_71671495_71671592_71671673_71671822_71671901_71671987_71672091_71673472_71673647_71676126_71676226_71676316_71676428_71676507_71676607_71679724_71679851_71686197
transcript_31688.known	chr2	+	1227	10	FSM	ENSMUSG00000004085.15	ENSMUST00000150126.8	1227	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_9	4.98887651569859	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAAAAATATCTTTTTG	3374	False	NA	NA	False	NA	NA	NA	72116120	72220183	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_72116200_72128531_72128725_72185901_72185990_72194971_72195074_72198744_72198811_72202070_72202100_72202214_72202353_72208977_72209065_72214474_72214550_72219813
transcript_31696.known	chr2	+	2424	9	FSM	ENSMUSG00000055612.16	ENSMUST00000102691.11	2424	9	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_3	87.0351042683353	568	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTTTATTTTTGTTT	8569	False	NA	NA	False	AATAAA	-16	NA	72306502	72317237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_72306656_72309249_72309373_72312034_72312293_72312772_72312857_72313698_72313906_72314222_72314361_72314942_72315093_72315519_72315657_72316063
transcript_317.known	chr1	+	2535	8	FSM	ENSMUSG00000056763.17	ENSMUST00000122156.8	2535	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	53.5148272415587	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATATGTTTGGCTGTTCCT	NA	False	NA	NA	False	AATATA	-16	NA	10109997	10138558	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_10110105_10115300_10115410_10117648_10117752_10128944_10129049_10130048_10130073_10134557_10134639_10135547_10135647_10136650
transcript_31705.known	chr2	-	3808	6	FSM	ENSMUSG00000027109.17	ENSMUST00000066003.7	3808	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	184.227685215876	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTGTTGTAGTCCGATG	2905	False	NA	-2	True	AATAAA	-22	NA	72810770	72766991	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_72768727_72770886_72771084_72776889_72777083_72800498_72801859_72809830_72809977_72810593
transcript_31706.known	chr2	+	364	3	FSM	ENSMUSG00000063714.16	ENSMUST00000146195.2	364	3	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_2	38	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAGGTTCTTGGAAAATA	NA	False	NA	-41	True	AATGAA	-9	NA	72809859	72818890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_72809940_72817871_72817977_72818711
transcript_31708.known	chr2	-	2175	11	FSM	ENSMUSG00000027108.16	ENSMUST00000028517.13	2175	11	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_4	35.4120036145937	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTCGTTTCTAAGGGGT	NA	False	NA	-13	True	ATTAAA	-14	NA	73044791	72923144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_72924069_72927488_72927612_72929635_72929733_72930417_72930559_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
transcript_3171.known	chr1	+	7796	15	FSM	ENSMUSG00000039748.12	ENSMUST00000039725.12	7796	15	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_2	66.5922714152693	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGACTTGTATCTTTTT	9553	False	NA	NA	False	NA	NA	NA	175708146	175741055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_175708423_175708697_175708767_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
transcript_31714.known	chr2	-	905	8	FSM	ENSMUSG00000027108.16	ENSMUST00000100015.6	905	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	132.211333609089	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCGTGTTTTGTTCAATG	NA	False	NA	-1	True	AATAAA	-19	NA	73044677	72967870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_72968000_72972241_72972340_72972651_72972733_72987081_72987258_73029744_73029873_73033668_73033813_73043203_73043305_73044629
transcript_31717.known	chr2	-	1300	4	FSM	ENSMUSG00000027108.16	ENSMUST00000136684.2	1300	4	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	2.62466929133727	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	73044756	73028944	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_73029873_73033668_73033813_73043203_73043305_73044629
transcript_31718.known	chr2	-	2821	10	FSM	ENSMUSG00000041777.13	ENSMUST00000058615.10	2821	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	34.2478259200042	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTTTGCCTATTGTGAAT	NA	False	NA	NA	False	AATAAA	-26	NA	73143045	73113448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_73115380_73116681_73116768_73117952_73118060_73134083_73134202_73136233_73136283_73136620_73136686_73136771_73136783_73137198_73137273_73140800_73140896_73142760
transcript_3172.nic	chr1	+	2995	15	NIC	ENSMUSG00000039748.12	novel	7796	15	NA	NA	-14	1	combination_of_known_junctions	FALSE	canonical	3	175	junction_2	73.1663257550206	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGGGAAGTTTAAATGC	9752	False	NA	6	True	AATAAA	-14	NA	175708345	175736299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_175708423_175708697_175708921_175710460_175710635_175714255_175714376_175715143_175715268_175716289_175716428_175719499_175719713_175720439_175720628_175721306_175721401_175723693_175723920_175726954_175727199_175728445_175729020_175731901_175732004_175733361_175733556_175735995
transcript_31723.known	chr2	+	3309	8	FSM	ENSMUSG00000008226.15	ENSMUST00000090811.11	3309	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_5	26.8791702981764	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTTGATCTTTGATAAA	NA	False	NA	NA	False	AATAAA	-30	NA	73142944	73168162	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646_73149844_73152328_73152539_73160106_73160270_73161326_73161502_73166054
transcript_31733.nic	chr2	+	1128	5	ISM	ENSMUSG00000008226.15	ENSMUST00000090811.11	3309	8	12	15347	12	449	5prime_fragment	FALSE	canonical	3	52	junction_4	23.0475052879916	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTTTGTTTGTTTGTAT	NA	False	NA	NA	False	ATTAAA	-22	NA	73142956	73152815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646_73149844_73152328
transcript_31737.known	chr2	+	1897	4	FSM	ENSMUSG00000008226.15	ENSMUST00000112050.2	1897	4	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	8.65383665716478	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGATTACTTTGGTTGTA	NA	False	NA	NA	False	AATAAA	-36	NA	73142997	73151140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_73143058_73145775_73145937_73148589_73148772_73149646
transcript_31743.known	chr2	-	4728	8	FSM	ENSMUSG00000075284.11	ENSMUST00000094681.11	4728	8	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	8.44671171376828	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTGTGGCTTTCTTGTCT	NA	False	NA	0	True	AATAAA	-21	NA	73360078	73259953	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_73262810_73264373_73264488_73265289_73265503_73267297_73268036_73270320_73270501_73274788_73274919_73278192_73278282_73359670
transcript_31744.known	chr2	-	4050	13	FSM	ENSMUSG00000056486.19	ENSMUST00000112024.10	4050	13	0	0	0	0	multi-exon	FALSE	canonical	1	103	junction_1	53.6273147648555	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTTGAGCTGCCTACTG	NA	False	NA	44	True	NA	NA	NA	73605690	73441003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_73443541_73445005_73445112_73448264_73448403_73454458_73454537_73455220_73455395_73462089_73462175_73490023_73490102_73509958_73510248_73537262_73537377_73540798_73540831_73546707_73546764_73551746_73551786_73605366
transcript_31751.known	chr2	-	2396	14	FSM	ENSMUSG00000027104.19	ENSMUST00000112017.8	2396	14	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_5	32.1212569481487	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTGGAATCTTGAGCA	NA	False	NA	NA	False	AGTAAA	-4	NA	73722899	73648609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722818
transcript_31754.known	chr2	-	4195	14	FSM	ENSMUSG00000027104.19	ENSMUST00000112007.8	4195	14	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_11	109.668839867438	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTTTTTAATCTGT	NA	False	NA	1	True	AATAAA	-26	NA	73722975	73646852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73693512_73693583_73700966_73701030_73704013_73704090_73710628_73710726_73722818
transcript_31755.known	chr2	-	4037	13	FSM	ENSMUSG00000027104.19	ENSMUST00000112010.9	4037	13	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_9	68.6093510795398	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTTTTTAATCTGT	NA	False	NA	1	True	AATAAA	-26	NA	73722880	73646852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73693512_73693583_73704013_73704090_73710628_73710726_73722818
transcript_31758.known	chr2	-	3943	12	FSM	ENSMUSG00000027104.19	ENSMUST00000112016.9	3943	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_5	77.3989343681314	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTTTTTAATCTGT	NA	False	NA	1	True	AATAAA	-26	NA	73722983	73646852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710726_73722818
transcript_31763.known	chr2	-	4210	14	FSM	ENSMUSG00000027104.19	ENSMUST00000055833.12	4210	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_13	80.0395612241018	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTGTTTTTAATCTGT	NA	False	NA	1	True	AATAAA	-26	NA	73722958	73646852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_73649493_73653544_73653651_73658815_73659023_73660135_73660286_73672703_73672791_73675782_73675898_73676540_73676720_73680932_73681062_73681207_73681327_73684138_73684236_73693512_73693583_73704013_73704090_73710628_73710724_73722818
transcript_31767.known	chr2	-	714	5	FSM	ENSMUSG00000018770.10	ENSMUST00000018914.3	714	5	0	0	0	0	multi-exon	FALSE	canonical	3	2058	junction_4	989.165146727279	1622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	-21	True	ATTAAA	-15	NA	73741670	73738790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741595
transcript_31777.known	chr2	-	862	4	FSM	ENSMUSG00000018770.10	ENSMUST00000142768.8	862	4	0	0	0	0	multi-exon	FALSE	canonical	3	2058	junction_3	1115.93219626762	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGTGTTGTGTCTCTTT	NA	False	NA	-121	True	NA	NA	NA	73741626	73739074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_73739722_73740207_73740286_73741298_73741405_73741595
transcript_31781.known	chr2	-	770	3	FSM	ENSMUSG00000018770.10	ENSMUST00000155474.2	770	3	0	0	0	0	multi-exon	FALSE	canonical	3	2058	junction_2	1124.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACCAGTGTAATCAGCAG	NA	False	NA	NA	False	NA	NA	NA	73741635	73739661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_73740286_73741298_73741405_73741595
transcript_31783.known	chr2	-	723	5	FSM	ENSMUSG00000018770.10	ENSMUST00000111996.8	723	5	0	0	0	0	multi-exon	FALSE	canonical	3	880	junction_4	1495.60896878161	939	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGCTGTGATTTGTACT	NA	False	NA	-21	True	ATTAAA	-15	NA	73741669	73738790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_73739052_73739527_73739722_73740207_73740286_73741298_73741405_73741585
transcript_31784.known	chr2	-	3321	14	FSM	ENSMUSG00000009207.16	ENSMUST00000111993.9	3321	14	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	86.7381968506344	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATGTCTGTGTCCAACA	NA	False	NA	29	True	AAAAAG	-43	NA	74409292	74350634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_74352642_74358435_74358519_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
transcript_31786.known	chr2	-	3195	13	FSM	ENSMUSG00000009207.16	ENSMUST00000064503.13	3195	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_6	31.6842056692114	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGTGTTTATTTTTATTTT	NA	False	NA	-14	True	ATTAAA	-43	NA	74409292	74350677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74385331_74385391_74399284_74399473_74401278_74401321_74403881_74403971_74409162
transcript_31792.known	chr2	-	2120	12	FSM	ENSMUSG00000009207.16	ENSMUST00000134641.8	2120	12	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_8	78.2650719516906	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTGTTAAATATCTAG	NA	False	NA	-14	True	AATAAA	-18	NA	74409275	74351676	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_74352642_74359974_74360146_74360849_74360921_74362219_74362326_74367647_74367846_74378181_74378234_74378318_74378403_74381404_74381446_74399284_74399473_74401278_74401321_74403881_74403971_74409162
transcript_31797.nic	chr2	-	1104	3	ISM	ENSMUSG00000009207.16	ENSMUST00000145293.2	483	4	-86	1271	-18	-1006	5prime_fragment	FALSE	canonical	3	274	junction_1	25	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATCTGAAGTCTTTTAGT	NA	False	NA	NA	False	AATACA	-42	NA	74409310	74400453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_74401321_74403881_74403971_74409162
transcript_31798.known	chr2	-	580	1	FSM	ENSMUSG00000075279.6	ENSMUST00000173086.2	580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	279	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACACTGACTGGCCGGGCG	NA	False	NA	NA	False	NA	NA	NA	74422253	74421673	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_74421700_74422300
transcript_318.known	chr1	-	1698	8	FSM	ENSMUSG00000025917.10	ENSMUST00000027050.10	1698	8	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_7	104.105715501119	1020	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCTGACTGGCCTGAGT	NA	False	NA	-1	True	AGTAAA	-40	NA	10108352	10094825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107894
transcript_31801.known	chr2	+	2950	10	FSM	ENSMUSG00000027099.10	ENSMUST00000028511.8	2950	10	0	0	0	0	multi-exon	FALSE	canonical	3	767	junction_7	57.1160827926797	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAATCGTAGAAAATAGAGA	NA	False	NA	NA	False	AATAAA	-22	NA	74656146	74708775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_74656388_74677581_74677630_74678642_74678690_74689748_74689822_74697214_74697292_74698663_74698757_74699226_74699266_74699647_74699774_74700751_74700829_74706646
transcript_31803.nnic	chr2	-	822	2	Genic_Genomic	ENSMUSG00000081406.5	novel	750	1	NA	NA	-32	72	multi-exon	FALSE	canonical	2	114	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAATGTGTCAAATGGCAC	NA	False	NA	NA	False	NA	NA	NA	75022198	75021344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr2_-_75021671_75021702
transcript_31804.known	chr2	-	750	1	FSM	ENSMUSG00000081406.5	ENSMUST00000118499.2	750	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14622	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTTTAAGAGCAACAAATA	NA	False	NA	NA	False	NA	NA	NA	75022166	75021416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_75021400_75022200
transcript_31807.known	chr2	+	5150	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111962.8	5150	11	0	0	0	0	multi-exon	FALSE	canonical	3	3726	junction_1	2097.55310779012	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGTTTTATCATTTTG	7481	False	NA	3	True	ATTAAA	-18	NA	75489610	75499751	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
transcript_3181.nic	chr1	-	603	4	ISM	ENSMUSG00000057335.12	ENSMUST00000192961.6	2708	7	-40	9997	-40	0	5prime_fragment	FALSE	canonical	3	59	junction_1	8.28653526310404	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTTTATGCCTACTGTT	NA	False	NA	NA	False	TATAAA	-14	NA	176641673	176615955	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_176616112_176620101_176620192_176621070_176621216_176641461
transcript_31815.known	chr2	+	1654	11	FSM	ENSMUSG00000059005.14	ENSMUST00000111964.8	1654	11	0	0	0	0	multi-exon	FALSE	canonical	3	3912	junction_1	2045.95805431099	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGTGAGTTAACACGTGAA	7475	False	NA	NA	False	NA	NA	NA	75489604	75496183	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577_75495646_75495741
transcript_31819.known	chr2	+	1074	10	FSM	ENSMUSG00000059005.14	ENSMUST00000164947.9	1074	10	0	0	0	0	multi-exon	FALSE	canonical	3	3726	junction_1	2155.72848103619	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAACAGAAACGGTAGG	7532	False	NA	-60	True	NA	NA	NA	75489661	75495630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_75489668_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577
transcript_3183.known	chr1	+	2776	18	FSM	ENSMUSG00000026504.18	ENSMUST00000027785.15	2776	18	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_6	3.6941925807312	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGAGTTGTTCCGTTTCCT	NA	False	NA	7	True	AATAAA	-17	NA	176642225	176848003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_176642622_176652317_176652471_176653764_176653851_176656435_176656550_176658622_176658749_176667850_176667992_176672389_176672455_176672746_176672936_176681329_176681469_176695777_176695931_176702129_176702265_176705555_176705673_176747109_176747253_176773673_176773802_176775846_176775956_176783357_176783490_176839454_176839582_176847680
transcript_31831.known	chr2	+	1140	10	FSM	ENSMUSG00000059005.14	ENSMUST00000090792.11	1140	10	0	0	0	0	multi-exon	FALSE	canonical	3	3912	junction_1	2101.42958982395	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAACAGAAACGGTAGG	7532	False	NA	-60	True	NA	NA	NA	75489661	75495630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75493188_75493270_75493914_75494059_75495371_75495495_75495577
transcript_31833.known	chr2	+	1734	10	FSM	ENSMUSG00000059005.14	ENSMUST00000111961.8	1734	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	3663.85558909979	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTGGTTTTTGTGCAT	7494	False	NA	NA	False	AAAAAG	-13	NA	75489623	75496465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75494016_75494059_75495371_75495495_75495577_75495646_75495741
transcript_3184.known	chr1	-	2771	13	FSM	ENSMUSG00000015961.9	ENSMUST00000016105.9	2771	13	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_9	76.3848079718008	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTCCTAAAAGACCAATGGC	NA	False	NA	NA	False	AATAAA	-16	NA	177624077	177590527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_177591864_177595220_177595371_177597490_177597589_177598706_177598832_177599637_177599793_177601140_177601268_177603146_177603229_177604022_177604131_177604378_177604446_177610408_177610460_177611614_177611684_177612461_177612565_177623777
transcript_31844.nnic	chr2	+	1292	9	NNC	ENSMUSG00000059005.14	novel	1734	10	NA	NA	-35	-71	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	3855.10570339842	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTGTAGTTCAGTTTT	7440	False	NA	NA	False	NA	NA	NA	75489569	75496112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493080_75495451_75495495_75495577_75495646_75495741
transcript_31851.nnic	chr2	+	1393	9	NIC	ENSMUSG00000059005.14	novel	1734	10	NA	NA	-35	-71	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	3855.10570339842	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTGTAGTTCAGTTTT	7440	False	NA	NA	False	NA	NA	NA	75489569	75496112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_75489734_75491809_75491933_75492014_75492162_75492239_75492451_75492830_75492921_75493004_75493101_75495371_75495495_75495577_75495646_75495741
transcript_31872.known	chr2	-	2475	5	FSM	ENSMUSG00000015839.7	ENSMUST00000102672.5	2475	5	0	0	0	0	multi-exon	FALSE	canonical	3	494	junction_1	38.2058568808501	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGACTTTTTGAATTTA	NA	False	NA	1	True	AATAAA	-22	NA	75534985	75505856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_75507529_75507888_75508057_75508831_75508922_75509506_75509774_75534707
transcript_31874.known	chr2	-	1447	2	FSM	ENSMUSG00000015839.7	ENSMUST00000152371.2	1447	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTGGACATGATAAAATCT	NA	False	NA	NA	False	ATTAAA	-18	NA	75534833	75521395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_75522717_75534707
transcript_31877.known	chr2	-	2737	1	FSM	ENSMUSG00000075273.5	ENSMUST00000099996.5	2737	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGCGGTGTTTAGCGCC	NA	False	NA	NA	False	NA	NA	NA	75768929	75766192	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_75766200_75768900
transcript_31880.known	chr2	-	655	4	FSM	ENSMUSG00000056436.5	ENSMUST00000028430.6	655	4	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_3	45.146674542232	178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCGTGCGTTATGTTTATGA	NA	False	NA	1	True	AATAAA	-30	NA	76190794	76184285	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_76184581_76186423_76186617_76187916_76187946_76190656
transcript_31883.known	chr2	+	1898	10	FSM	ENSMUSG00000042369.9	ENSMUST00000046389.5	1898	10	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_1	22.7991769398766	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATGACTTATTTATATGAA	NA	False	NA	55	True	AATAAA	-21	NA	76200327	76214112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_76200773_76202378_76202502_76203903_76204031_76205699_76205823_76206662_76206849_76208724_76208855_76209021_76209107_76209261_76209426_76210708_76210910_76213798
transcript_31884.nnic	chr2	+	2412	10	NNC	ENSMUSG00000042369.9	novel	1898	10	NA	NA	19	5795	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_9	106.437717254369	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTTTACAGTCTTATTA	NA	False	NA	NA	False	AATAAA	-32	NA	76200346	76219907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_76200773_76202378_76202502_76203903_76204031_76205699_76205823_76206662_76206849_76208724_76208855_76209021_76209107_76209261_76209426_76210708_76210910_76219060
transcript_31886.known	chr2	+	8037	27	FSM	ENSMUSG00000042359.19	ENSMUST00000077972.11	8037	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	14.533169570038	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACCTGGTGTGTGTTGAC	NA	False	NA	NA	False	AATAAA	-23	NA	76236881	76430987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_76237034_76329600_76329767_76354232_76354489_76370447_76370541_76376321_76376445_76378662_76378717_76379783_76379898_76380004_76380176_76382461_76382595_76385357_76385462_76386233_76386327_76390529_76390605_76395127_76395294_76398452_76398587_76399363_76399388_76407355_76407464_76409516_76409655_76414804_76414893_76415359_76415614_76416457_76416596_76417058_76417123_76418895_76418975_76420657_76420803_76422127_76422273_76423683_76423811_76425107_76425231_76426217
transcript_31891.known	chr2	-	1614	8	FSM	ENSMUSG00000002731.7	ENSMUST00000002808.7	1614	8	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_1	7.52953368748825	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTAGCTTTATTCTTTGT	NA	False	NA	35	True	NA	NA	NA	76478359	76460241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_76460913_76463876_76464052_76467138_76467234_76469543_76469662_76470584_76470664_76473566_76473649_76477468_76477639_76478135
transcript_31895.nic	chr2	-	1078	6	ISM	ENSMUSG00000002731.7	ENSMUST00000002808.7	1614	8	-259	6846	-259	51	5prime_fragment	FALSE	canonical	3	42	junction_4	3.65513337649941	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTCCCTTCATTTCTTGT	NA	False	NA	NA	False	AATAAA	-21	NA	76478618	76467087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_76467234_76469543_76469662_76470584_76470664_76473566_76473649_76477468_76477639_76478135
transcript_31897.known	chr2	-	860	4	FSM	ENSMUSG00000002732.15	ENSMUST00000002809.14	860	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	10.2089285540757	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTTTTGCAAATCTGACT	NA	False	NA	-13	True	AATAAA	-26	NA	76503414	76493387	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_76493697_76496020_76496155_76502040_76502193_76503149
transcript_31898.known	chr2	+	2534	8	FSM	ENSMUSG00000002733.9	ENSMUST00000111920.2	2534	8	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_7	23.0465367711259	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTATTTTGTTTATTG	6506	False	NA	6	True	ATTAAA	-19	NA	76505624	76527172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_76505979_76510506_76510624_76513073_76513230_76516962_76517100_76517625_76517791_76520788_76520833_76522992_76523109_76525727
transcript_319.nic	chr1	-	1277	8	NIC	ENSMUSG00000025917.10	novel	1698	8	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_7	318.204272730071	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCACGTGAAATTGTCCT	NA	False	NA	-25	True	AATAAA	-2	NA	10108422	10095067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_10095289_10097327_10097477_10100823_10100936_10102563_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10108143
transcript_3190.known	chr1	-	7640	14	FSM	ENSMUSG00000039630.11	ENSMUST00000037748.9	7640	14	0	0	0	0	multi-exon	FALSE	canonical	2	3444	junction_4	860.763298254115	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACATGTATTGTAGTACC	NA	False	NA	NA	False	ATTAAA	-14	NA	178165362	178151907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_178156973_178157432_178157505_178157729_178157912_178158156_178158412_178158657_178158827_178158913_178159043_178159399_178159520_178159657_178159922_178160561_178160675_178161111_178161212_178161451_178161592_178163446_178163521_178163611_178163724_178164517
transcript_31900.known	chr2	-	8969	23	FSM	ENSMUSG00000044033.17	ENSMUST00000049544.14	8969	23	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_11	5.83396297270922	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGAGGACCTCAATCTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	77000979	76840245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_76845592_76850256_76850374_76853789_76853903_76857935_76858120_76859579_76859775_76860910_76861052_76869779_76869930_76871708_76871889_76872786_76872976_76875003_76875130_76875949_76876130_76879922_76880103_76884920_76885113_76888236_76888357_76889883_76890026_76905179_76905353_76919413_76919609_76938706_76938824_76954465_76954720_76958572_76958682_76962525_76962718_76998854_76998978_77000728
transcript_31902.known	chr2	-	2720	18	FSM	ENSMUSG00000042272.18	ENSMUST00000102659.2	2720	18	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_17	13.2907335619941	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTTATTTAATTTGGTAG	NA	False	NA	NA	False	AATAAA	-14	NA	77110936	77016898	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_77017605_77018843_77018966_77021304_77021497_77022042_77022166_77022842_77022925_77027166_77027327_77028632_77028748_77029209_77029405_77036549_77036673_77042703_77042916_77045405_77045462_77047266_77047365_77048432_77048547_77061007_77061122_77064992_77065084_77071956_77072066_77075360_77075431_77110898
transcript_31903.nnic	chr2	-	2668	2	Antisense	novelGene_ENSMUSG00000081611.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCGGTTGTTTGTTTGT	7338	False	NA	NA	False	ATTAAA	-16	NA	77139813	77114977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr2_-_77117450_77139617
transcript_31906.known	chr2	-	3471	21	FSM	ENSMUSG00000027014.15	ENSMUST00000065889.10	3471	21	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_20	67.1203955590251	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCAGTGAGGTACTCTG	NA	False	NA	NA	False	AATAAA	-16	NA	77776719	77725996	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77770645_77770707_77776493
transcript_31908.nic	chr2	-	3153	21	NIC	ENSMUSG00000027014.15	novel	3471	21	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_20	72.1889707642379	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTCTTTTTTTCTAAA	NA	False	NA	NA	False	AATAAA	-21	NA	77776532	77726109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_77726923_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77770645_77770707_77776493
transcript_31909.known	chr2	-	3388	20	FSM	ENSMUSG00000027014.15	ENSMUST00000111821.9	3388	20	0	0	0	0	multi-exon	TRUE	canonical	3	143	junction_19	43.213763581536	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCAGTGAGGTACTCTG	NA	False	NA	NA	False	AATAAA	-16	NA	77776697	77725996	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_77726923_77734139_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77776493
transcript_31910.known	chr2	-	3255	20	FSM	ENSMUSG00000027014.15	ENSMUST00000111818.8	3255	20	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	52.4085273558816	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCATTGTCTTTTTTTCTA	NA	False	NA	NA	False	AATAAA	-19	NA	77776697	77726111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_77726923_77734157_77734379_77734467_77734570_77735700_77735829_77737425_77737579_77738411_77738490_77741853_77741915_77745840_77745923_77747399_77747508_77751161_77751225_77751310_77751518_77751753_77751890_77754483_77754538_77754830_77755000_77757551_77757681_77759599_77759843_77761778_77761890_77763042_77763108_77766936_77767067_77776493
transcript_31911.known	chr2	+	2249	6	FSM	ENSMUSG00000027011.15	ENSMUST00000028398.14	2249	6	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_4	9.66643677887566	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGGTCCTAAGTATGGT	NA	False	NA	NA	False	AATAAA	-20	NA	78699390	78751637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_78699750_78700800_78701023_78702765_78702817_78744017_78744151_78749030_78749179_78750301
transcript_31913.known	chr2	+	4042	23	FSM	ENSMUSG00000027006.14	ENSMUST00000028392.8	4042	23	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_19	21.5763108543292	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTCTTTTGAAGATGAT	NA	False	NA	12	True	AATAAA	-18	NA	80145809	80184387	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_80146150_80147592_80147944_80149503_80149667_80151587_80151639_80155003_80155087_80155338_80155471_80155961_80156056_80157001_80157080_80158415_80158460_80161612_80161751_80163272_80163363_80164069_80164184_80165796_80165912_80170816_80170945_80171155_80171273_80174260_80174363_80175267_80175424_80176855_80176990_80177687_80177742_80177991_80178140_80179612_80179733_80180972_80181078_80183202
transcript_31920.known	chr2	+	1559	9	FSM	ENSMUSG00000026999.15	ENSMUST00000028382.13	1559	9	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_4	57.0169930810105	297	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACATTTGTTTGGAAGGT	NA	False	NA	12	True	AATAAA	-21	NA	80469159	80489246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_80469277_80472968_80473140_80474495_80474624_80476752_80476808_80483197_80483340_80485136_80485207_80486292_80486422_80487532_80487698_80488664
transcript_31930.known	chr2	+	1324	4	FSM	ENSMUSG00000027001.11	ENSMUST00000147290.8	1324	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	41.0446910899164	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTTTGTGGGGTTTTTTT	NA	False	NA	NA	False	TTTAAA	-19	NA	80447443	80462074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_80447629_80451537_80451585_80454551_80454705_80461135
transcript_31932.known	chr2	+	1632	4	FSM	ENSMUSG00000027001.11	ENSMUST00000028384.5	1632	4	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	4.10960933531265	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGCTTCAAGTGATTGT	NA	False	NA	NA	False	NA	NA	NA	80447388	80462005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_80447951_80451537_80451585_80454551_80454705_80461135
transcript_31933.known	chr2	+	1993	4	FSM	ENSMUSG00000027001.11	ENSMUST00000151204.2	1993	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	40.1441845795323	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGTAAGTACATACTGCAAA	NA	False	NA	NA	False	AATAAA	-15	NA	80447609	80462705	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_80447951_80451537_80451585_80454669_80454705_80461135
transcript_31935.known	chr2	+	2111	10	FSM	ENSMUSG00000027091.15	ENSMUST00000081591.7	2111	10	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_6	95.2257875645245	847	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGGCCTTTTTCTTTTA	NA	False	NA	28	True	AATAAA	-36	NA	83474778	83494966	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352_83488506_83488873_83488966_83490401_83490585_83491490_83491638_83491776_83491879_83492492_83492617_83494163
transcript_31941.known	chr2	+	755	4	FSM	ENSMUSG00000027091.15	ENSMUST00000130948.8	755	4	0	0	0	0	multi-exon	FALSE	canonical	3	844	junction_1	33.4697209761633	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCAGTTTCGATTTGTCTG	NA	False	NA	NA	False	AATAAA	-20	NA	83474824	83488646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_83475072_83483701_83483804_83487359_83487472_83488352
transcript_31942.nnic	chr2	-	1672	11	NNC	ENSMUSG00000027082.16	novel	2027	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_10	89.6026785313921	38	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGACTGTCCCCCTT	NA	False	NA	-2	True	AATAAA	-19	NA	84307107	84263198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84304286_84304457_84305105_84305270_84307034
transcript_31943.nnic	chr2	-	1622	11	NNC	ENSMUSG00000027082.16	novel	2027	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	90.1066590214064	35	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGACTGTCCCCCTT	NA	False	NA	-2	True	AATAAA	-19	NA	84307107	84263198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84304286_84304457_84305105_84305270_84307084
transcript_31945.nic	chr2	-	1350	9	NIC	ENSMUSG00000027082.16	novel	2027	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	91	junction_8	41.6863286941894	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGACTGTCCCCCTT	NA	False	NA	-2	True	AATAAA	-19	NA	84307119	84263198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307034
transcript_31946.nic	chr2	-	1345	9	NIC	ENSMUSG00000027082.16	novel	2027	10	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_8	40.1230529122598	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTTGACTGTCCCCCTT	NA	False	NA	-2	True	AATAAA	-19	NA	84307164	84263198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_84263529_84264585_84264766_84274353_84274483_84275083_84275261_84282900_84282940_84284143_84284342_84288366_84288478_84304042_84304144_84307084
transcript_31948.known	chr2	-	5380	19	FSM	ENSMUSG00000034101.15	ENSMUST00000111691.2	5380	19	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_18	37.1560356827033	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGGAGGTCTGTGTCA	NA	False	NA	-38	True	AATAAA	-16	NA	84481109	84431126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_84433248_84433992_84434097_84435527_84435591_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
transcript_31949.known	chr2	-	5294	18	FSM	ENSMUSG00000034101.15	ENSMUST00000111697.9	5294	18	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_2	44.1949127323348	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGAGGTCTGTGTCATT	NA	False	NA	-36	True	AATAAA	-18	NA	84481084	84431124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_84433248_84433992_84434097_84438672_84438761_84439303_84439419_84439873_84440067_84440851_84441003_84441106_84441235_84442367_84442437_84442875_84442894_84443279_84443434_84444231_84444350_84445431_84445616_84446823_84447288_84450262_84450799_84451178_84451332_84452354_84452427_84454613_84454903_84480749
transcript_31953.known	chr2	-	1977	8	FSM	ENSMUSG00000050043.17	ENSMUST00000053664.9	1977	8	0	0	0	0	multi-exon	FALSE	canonical	3	1517	junction_2	94.3986336808766	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCCTTGCTGTTTTTCCT	5291	False	NA	-8	True	AATAAA	-16	NA	84508400	84501660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506088_84506203_84506440_84506502_84508194
transcript_31954.known	chr2	-	1926	7	FSM	ENSMUSG00000050043.17	ENSMUST00000111664.8	1926	7	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_5	582.842865235181	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCCTTGCTGTTTTTCCTT	5229	False	NA	-7	True	AATAAA	-17	NA	84508462	84501659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_84502877_84503367_84503498_84503597_84503664_84503843_84503951_84505748_84505826_84506440_84506502_84508194
transcript_31963.known	chr2	+	2059	5	FSM	ENSMUSG00000027080.7	ENSMUST00000102645.4	2059	5	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_3	24.2525771826418	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGAGGCTGGAGTCTTCCCT	3357	False	NA	12	True	AATAAA	-21	NA	84508745	84518559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_84509006_84515534_84515792_84515946_84516044_84516534_84516630_84517209
transcript_3197.known	chr1	+	471	4	FSM	ENSMUSG00000026500.7	ENSMUST00000027781.7	471	4	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	43.5150037981793	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTTTTACATGAAATCC	NA	False	NA	20	True	ATTAAA	-23	NA	178146694	178150258	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_178146774_178149309_178149425_178149506_178149571_178150045
transcript_31972.known	chr2	-	747	4	FSM	ENSMUSG00000076437.12	ENSMUST00000117299.10	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	1785	junction_1	271.099407761966	1805	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGTTTAAATTTTGTCTT	296	False	NA	-8	True	AATAAA	-25	NA	84501114	84499558	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_84499742_84500330_84500461_84500588_84500735_84500826
transcript_31973.known	chr2	-	654	4	FSM	ENSMUSG00000076437.12	ENSMUST00000102647.11	654	4	0	0	0	0	multi-exon	FALSE	canonical	3	329	junction_1	946.216677088287	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGAGCAAGTTTAAATTT	358	False	NA	-14	True	AATAAA	-19	NA	84501052	84499564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_84499742_84500355_84500461_84500588_84500735_84500826
transcript_31974.known	chr2	-	783	3	FSM	ENSMUSG00000076437.12	ENSMUST00000102646.4	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	2216	junction_1	111	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTACTTGTAGTTAAGGTT	369	False	NA	NA	False	AATAAA	-15	NA	84501041	84500038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_84500461_84500588_84500735_84500826
transcript_31975.known	chr2	-	1912	3	FSM	ENSMUSG00000027079.16	ENSMUST00000028475.9	1912	3	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	30.5	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGTATGATTCTTTTTTT	NA	False	NA	-21	True	AATAAA	-17	NA	84557694	84553465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_84554562_84555872_84556501_84557506
transcript_31977.known	chr2	-	1208	2	FSM	ENSMUSG00000027079.16	ENSMUST00000138231.2	1208	2	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	0	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTGGTATGATTCTTTTT	NA	False	NA	-23	True	AATAAA	-15	NA	84557620	84553467	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_84554562_84557506
transcript_31979.known	chr2	-	726	2	FSM	ENSMUSG00000097187.2	ENSMUST00000181711.2	726	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACACTCTCCTGCTTCCTGA	NA	False	NA	NA	False	AATAAA	-21	NA	84573999	84572512	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_84573045_84573805
transcript_3198.known	chr1	-	710	3	FSM	ENSMUSG00000039630.11	ENSMUST00000162916.2	710	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	3043.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAGTTTTGATGGCAAC	NA	False	NA	NA	False	AAAACA	-42	NA	178157885	178152396	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_178152879_178157432_178157505_178157729
transcript_31980.known	chr2	-	1768	8	FSM	ENSMUSG00000023224.13	ENSMUST00000023994.10	1768	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_7	34.9080424626107	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCAGACATTTTCTTCT	NA	False	NA	-26	True	AATAAA	-1	NA	84605748	84595730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_84596172_84597618_84597839_84600117_84600255_84600436_84600641_84601768_84601904_84603474_84603989_84605083_84605159_84605706
transcript_31981.nic	chr2	-	1843	7	ISM	ENSMUSG00000023224.13	ENSMUST00000023994.10	1768	8	473	0	197	0	3prime_fragment	FALSE	canonical	3	78	junction_3	14.4270194041905	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGCAGACATTTTCTTCT	NA	False	NA	-26	True	AATAAA	-1	NA	84605275	84595730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_84596172_84597618_84597839_84600117_84600255_84600436_84600641_84601768_84601904_84603474_84603989_84605083
transcript_31982.known	chr2	+	1560	4	FSM	ENSMUSG00000027078.15	ENSMUST00000102642.9	1560	4	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_3	17.1075032271418	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCAGAAGTCGGACTTCA	NA	False	NA	NA	False	GATAAA	-13	NA	84629171	84640520	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_84629277_84633122_84633219_84636680_84636868_84639348
transcript_31983.known	chr2	-	1761	8	FSM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	63.4909603078763	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	NA	False	NA	-19	True	AATAAA	-19	NA	84652996	84641519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227_84646384_84647321_84647368_84647467_84647601_84648619_84649255_84652836
transcript_31984.nnic	chr2	-	907	5	NNC	ENSMUSG00000027077.8	novel	1761	8	NA	NA	6389	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_4	56.9078202007422	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	4158	False	NA	-19	True	AATAAA	-19	NA	84646607	84641519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227_84646384_84646487
transcript_31985.nic	chr2	-	900	5	ISM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	5562	0	5562	0	3prime_fragment	FALSE	canonical	3	6	junction_4	55.2222781130949	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	3331	False	NA	-19	True	AATAAA	-19	NA	84647434	84641519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227_84646384_84647321
transcript_31986.nnic	chr2	-	1009	4	NNC	ENSMUSG00000027077.8	novel	1761	8	NA	NA	6362	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_2	54.1992209866116	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	4131	False	NA	-19	True	AATAAA	-19	NA	84646634	84641519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_84641884_84645634_84645758_84645950_84646066_84646227
transcript_31987.nic	chr2	-	1038	4	ISM	ENSMUSG00000027077.8	ENSMUST00000028471.6	1761	8	6362	0	6362	0	3prime_fragment	FALSE	canonical	3	109	junction_3	14.8996644257513	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTGGCAGTTTGCC	4131	False	NA	-19	True	AATAAA	-19	NA	84646634	84641519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_84641884_84645634_84645787_84645950_84646066_84646227
transcript_31988.known	chr2	+	690	3	FSM	ENSMUSG00000027076.11	ENSMUST00000028470.10	690	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_1	17.5	403	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAGTGTCTTTACTTGAGA	6417	False	NA	10	True	ATTAAA	-15	NA	84657340	84660557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_84657492_84657942_84658058_84660133
transcript_31989.nic	chr2	+	2440	15	NIC	ENSMUSG00000027075.17	novel	3089	15	NA	NA	-69	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	18.8209880674936	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCTGGTGTGTATCTGT	NA	False	NA	12	True	AATAAA	-14	NA	84669669	84693925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_84669850_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
transcript_3199.known	chr1	+	3580	7	FSM	ENSMUSG00000026495.9	ENSMUST00000027775.9	3580	7	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	10.1447851956888	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGGACTCTGCTTTGTGT	NA	False	NA	8	True	NA	NA	NA	178233667	178312078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_178233699_178264966_178265052_178283380_178283454_178302446_178302527_178303249_178303293_178303389_178303457_178308877
transcript_31990.known	chr2	+	2539	15	FSM	ENSMUSG00000027075.17	ENSMUST00000028469.14	2539	15	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	14.9196829314671	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTATCTGTGACTG	NA	False	NA	17	True	AATAAA	-19	NA	84669751	84693930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_84670026_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
transcript_31991.known	chr2	+	2556	15	FSM	ENSMUSG00000027075.17	ENSMUST00000111624.8	2556	15	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	20.7551321413303	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGCTGGTGTGTATCTGT	307	False	NA	12	True	AATAAA	-14	NA	84670542	84693925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_84670839_84671182_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
transcript_31992.known	chr2	+	2487	14	FSM	ENSMUSG00000027075.17	ENSMUST00000111625.2	2487	14	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_5	11.2969598465759	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGTGACTGGAGGAGTA	733	False	NA	25	True	AATAAA	-27	NA	84670968	84693938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_84671350_84680009_84680188_84680295_84680352_84680459_84680537_84683011_84683105_84684755_84684890_84685814_84685994_84687100_84687248_84687404_84687441_84687627_84687782_84690032_84690175_84690433_84690508_84691719_84691844_84693226
transcript_31994.nic	chr2	+	2463	13	NIC	ENSMUSG00000027074.15	novel	2621	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	9.67923034130297	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGCTTCTACCTCTTTG	NA	False	NA	9	True	AATAAA	-20	NA	84766922	84788853	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_84766989_84767866_84768214_84768566_84768697_84771324_84771372_84774585_84774663_84774861_84774955_84777183_84777324_84778678_84778777_84780316_84780536_84780764_84780885_84785774_84785962_84786615_84786731_84788029
transcript_31995.known	chr2	+	2583	13	FSM	ENSMUSG00000027074.15	ENSMUST00000090726.6	2583	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_9	6.42693982821961	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGCTTCTACCTCTTTG	NA	False	NA	9	True	AATAAA	-20	NA	84767007	84788853	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_84767194_84767866_84768214_84768566_84768697_84771324_84771372_84774585_84774663_84774861_84774955_84777183_84777324_84778678_84778777_84780316_84780536_84780764_84780885_84785774_84785962_84786615_84786731_84788029
transcript_32.known	ERCC-00085	+	828	1	FSM	ERCC-00085A	DQ883669	828	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00085_+_0_800
transcript_32003.known	chr2	+	2739	17	FSM	ENSMUSG00000027067.17	ENSMUST00000077798.13	2739	17	0	0	0	0	multi-exon	FALSE	canonical	3	1260	junction_7	140.688874382447	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	23	True	AATAAA	-19	NA	84867577	84877453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_84867673_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
transcript_32004.nnic	chr2	+	2811	17	NNC	ENSMUSG00000027067.17	novel	2739	17	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	394.966251525051	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGATGTCCTTATGTCTCCTT	NA	False	NA	23	True	AATAAA	-19	NA	84867523	84877453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_84867673_84868119_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
transcript_32005.known	chr2	+	2721	17	FSM	ENSMUSG00000027067.17	ENSMUST00000168266.8	2721	17	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	374.603436149483	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACGATGTCCTTATGTCTC	NA	False	NA	20	True	AATAAA	-16	NA	84867794	84877450	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_84867875_84868137_84868314_84868696_84868883_84870217_84870324_84870608_84870800_84870902_84871134_84871262_84871367_84871451_84871581_84871778_84872001_84872586_84872660_84873036_84873176_84873299_84873346_84874662_84874793_84875753_84875925_84876027_84876117_84876596_84876784_84876989
transcript_32022.known	chr2	-	1812	12	FSM	ENSMUSG00000027071.15	ENSMUST00000028465.14	1812	12	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_11	6.62452243717697	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCTAGGTGTCTACTCTT	NA	False	NA	NA	False	AATGAA	-1	NA	84865831	84828926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_84829471_84829949_84830028_84830667_84830734_84831000_84831095_84852072_84852210_84852691_84852834_84853497_84853576_84853826_84853921_84854453_84854518_84854725_84854798_84855199_84855336_84865524
transcript_32023.nic	chr2	+	1554	7	ISM	ENSMUSG00000033955.14	ENSMUST00000048400.4	4799	8	5635	10	2830	0	3prime_fragment	FALSE	canonical	3	230	junction_4	19.0613046073277	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGGGGTTGTCCAGGATT	NA	False	NA	2	True	AATAAA	-11	NA	84894137	84903382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_84894361_84900331_84900702_84900950_84901102_84901216_84901354_84902049_84902208_84902439_84902513_84902940
transcript_32024.nic	chr2	-	1945	4	NIC	ENSMUSG00000025839.4	novel	1861	3	NA	NA	-62	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_3	11.1455023315337	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTATTTATTTATTTAT	NA	False	NA	-7	True	AATAAA	-16	NA	87327499	87319430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_87320426_87321167_87321750_87322478_87322538_87327190
transcript_32026.nic	chr2	-	2202	4	NIC	ENSMUSG00000025839.4	novel	1861	3	NA	NA	-68	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	7.40870359029762	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTATTTATTTATTTAT	NA	False	NA	-7	True	AATAAA	-16	NA	87327505	87319430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_87320426_87321167_87321750_87322478_87322789_87327190
transcript_32027.nic	chr2	-	1886	3	NIC	ENSMUSG00000025839.4	novel	1861	3	NA	NA	-62	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	9.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTATTTATTTATTTAT	NA	False	NA	-7	True	AATAAA	-16	NA	87327499	87319430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_87320426_87321167_87321750_87327190
transcript_32028.known	chr2	-	1861	3	FSM	ENSMUSG00000025839.4	ENSMUST00000026957.4	1861	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTTATTTATTTATTTAT	NA	False	NA	-7	True	AATAAA	-16	NA	87322762	87319430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_87320426_87321167_87321750_87322478
transcript_32029.nnic	chr2	+	757	3	Genic_Genomic	ENSMUSG00000082908.5	novel	253	1	NA	NA	-10138	371	multi-exon	FALSE	canonical	2	4	junction_1	65.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAGTCTAAGG	NA	False	NA	NA	False	AATAAA	-33	NA	87346350	87357112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr2_+_87346418_87356339_87356560_87356642
transcript_32030.nnic	chr2	+	690	2	Genic_Genomic	ENSMUSG00000082908.5	novel	253	1	NA	NA	-133	371	multi-exon	FALSE	canonical	1	11	junction_1	0	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAGTCTAAGG	NA	False	NA	NA	False	AATAAA	-33	NA	87356355	87357112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr2_+_87356560_87356626
transcript_32031.known	chr2	+	5684	37	FSM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	112.76240658795	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGTATATTAAGATTTAT	NA	False	NA	16	True	AATAAA	-18	NA	90507558	90566672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_90507815_90509357_90509853_90510115_90510228_90514265_90514477_90515316_90515540_90517637_90517717_90519449_90519565_90520410_90520570_90523396_90523475_90524175_90524274_90526983_90527069_90528203_90528273_90530459_90530544_90530756_90530928_90532356_90532457_90532724_90532891_90533402_90533531_90534154_90534316_90537266_90537401_90538476_90538548_90539166_90539327_90540376_90540447_90542288_90542388_90544117_90544238_90547937_90548034_90548157_90548253_90548342_90548440_90548531_90548638_90551533_90551695_90552373_90552435_90553680_90553792_90553955_90554080_90555945_90556048_90560022_90560165_90563124_90563251_90563449_90563555_90565758
transcript_32033.nic	chr2	+	1520	9	ISM	ENSMUSG00000051329.14	ENSMUST00000057481.7	5684	37	2159	42089	2159	0	internal_fragment	FALSE	canonical	3	521	junction_6	48.3806521245839	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATTGAATTAGTATGATTA	NA	False	NA	NA	False	AATAAA	-11	NA	90509717	90524583	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_90509853_90510115_90510228_90514265_90514477_90515316_90515540_90517637_90517717_90519449_90519565_90520410_90520570_90523396_90523475_90524175
transcript_3204.known	chr1	-	1229	6	FSM	ENSMUSG00000055067.16	ENSMUST00000111134.2	1229	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	165.062412438447	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCAGTAGATCAAGGGGCAG	NA	False	NA	NA	False	NA	NA	NA	179345606	179222788	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_179223397_179232847_179232985_179237971_179238030_179239242_179239351_179250919_179250984_179345352
transcript_32040.known	chr2	+	2377	13	FSM	ENSMUSG00000027282.18	ENSMUST00000150232.8	2377	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	734.005274542054	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCATGCTTAGCCTGCTGC	172	False	NA	7	True	NA	NA	NA	90677574	90696984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683367_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
transcript_32042.known	chr2	+	2596	13	FSM	ENSMUSG00000027282.18	ENSMUST00000136872.8	2596	13	0	0	0	0	multi-exon	FALSE	canonical	3	2037	junction_4	251.273534000079	1622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAGGTGTGACTTAGTGGT	96	False	NA	NA	False	ATTAAA	-12	NA	90677498	90697154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
transcript_32045.known	chr2	+	1047	13	FSM	ENSMUSG00000027282.18	ENSMUST00000057216.15	1047	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	948.923465330875	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGATTGGTGTCTGCCTT	228	False	NA	51	True	NA	NA	NA	90677630	90695735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_90677708_90679714_90679800_90679941_90680049_90683159_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
transcript_32047.nic	chr2	+	1147	13	NIC	ENSMUSG00000027282.18	novel	1047	13	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	118	junction_1	704.955687141634	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGATTGGTGTCTGCCTT	104	False	NA	51	True	NA	NA	NA	90677506	90695735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_90677708_90679714_90679800_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
transcript_32053.known	chr2	+	2281	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111467.4	2281	12	0	0	0	0	multi-exon	FALSE	canonical	3	421	junction_3	644.761587047671	283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCATGCTTAGCCTGCTGC	214	False	NA	7	True	NA	NA	NA	90677616	90696984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_90677730_90679714_90679800_90679941_90680049_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
transcript_32057.known	chr2	+	1066	12	FSM	ENSMUSG00000027282.18	ENSMUST00000111468.10	1066	12	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_1	628.312668913619	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGGTGATTGGTGTCTGC	119	False	NA	48	True	NA	NA	NA	90677521	90695732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_90677730_90679941_90680049_90683183_90683211_90683394_90683458_90685267_90685326_90685779_90685832_90687149_90687210_90689819_90689914_90690806_90690855_90691725_90691794_90693933_90694010_90695527
transcript_32067.known	chr2	-	1046	7	FSM	ENSMUSG00000005510.10	ENSMUST00000005647.4	1046	7	0	0	0	0	multi-exon	FALSE	canonical	3	1877	junction_6	40.2105569333339	980	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCTTCCTCTGTGGTGGT	NA	False	NA	-11	True	AATAAA	-16	NA	90735171	90724979	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_90725222_90728727_90728848_90728980_90729107_90732706_90732857_90733190_90733289_90734766_90734833_90734927
transcript_3207.known	chr1	-	2449	8	FSM	ENSMUSG00000026492.12	ENSMUST00000027769.6	2449	8	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	6.92820323027551	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTGTGTATATGTGTGT	7878	False	NA	NA	False	AATAAA	-15	NA	179373832	179355619	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_179356920_179358868_179359030_179359629_179359693_179361197_179361288_179365263_179365413_179369871_179370023_179372462_179372552_179373386
transcript_32074.known	chr2	-	3313	5	FSM	ENSMUSG00000063235.19	ENSMUST00000125001.11	3313	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	173.481987537612	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAAAGCAAGCATCCTAG	NA	False	NA	NA	False	NA	NA	NA	90748331	90739059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_90741664_90744327_90744520_90747197_90747256_90747772_90747854_90747953
transcript_32075.known	chr2	+	2343	4	FSM	ENSMUSG00000005505.13	ENSMUST00000111464.8	2343	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	29.2726645334669	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTCTGTGTTGACT	2335	False	NA	NA	False	AATAAA	-42	NA	90735083	90740905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_90735157_90736009_90736628_90737888_90737996_90739360
transcript_32076.known	chr2	+	2437	4	FSM	ENSMUSG00000005505.13	ENSMUST00000090682.4	2437	4	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	4.10960933531265	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTCTGTGTTGACT	2338	False	NA	NA	False	AATAAA	-42	NA	90735086	90740905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_90735254_90736009_90736628_90737888_90737996_90739360
transcript_32077.known	chr2	-	1316	4	FSM	ENSMUSG00000063235.19	ENSMUST00000111461.13	1316	4	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_3	26.7332502076846	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGGGACTCCCCTCACA	NA	False	NA	-1	True	AATAAA	-26	NA	90748389	90741056	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_90741664_90744327_90744520_90747772_90747854_90747953
transcript_32080.known	chr2	+	4830	15	FSM	ENSMUSG00000005506.17	ENSMUST00000005643.14	4830	15	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_2	185.405677653416	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2317	False	NA	8	True	ATTAAA	-8	NA	90770741	90849835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_90770987_90818009_90818162_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
transcript_32081.nic	chr2	+	3554	15	NIC	ENSMUSG00000005506.17	novel	4830	15	NA	NA	16	1853	combination_of_known_junctions	FALSE	canonical	3	151	junction_14	240.449207585659	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTAGGTTGGGCAGGCAC	2394	False	NA	NA	False	NA	NA	NA	90770818	90845570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_90770987_90818009_90818162_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836976_90837041_90838516_90838646_90839546_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90843835
transcript_32082.known	chr2	+	4678	14	FSM	ENSMUSG00000005506.17	ENSMUST00000111451.10	4678	14	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_7	113.564516501784	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGAACTGTTTGTCTTCT	2317	False	NA	8	True	ATTAAA	-8	NA	90770741	90849835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_90770987_90828924_90829113_90831350_90831434_90831806_90831856_90833555_90833691_90834155_90834236_90835045_90835208_90836964_90837041_90838516_90838646_90839549_90839661_90840737_90840924_90843043_90843188_90843582_90843748_90846910
transcript_32086.known	chr2	+	1606	8	FSM	ENSMUSG00000002104.12	ENSMUST00000050323.6	1606	8	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	10.5791477608992	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTAGTGATTCTGACCCTT	NA	False	NA	7	True	AATAAA	-15	NA	90865985	90876074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_90866334_90866891_90867231_90872198_90872358_90873304_90873404_90873484_90873608_90874035_90874090_90875184_90875385_90875790
transcript_32087.known	chr2	+	1458	7	FSM	ENSMUSG00000002104.12	ENSMUST00000111446.10	1458	7	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	21.4683229174728	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGCTAGTGATTCTGACC	NA	False	NA	4	True	AATAAA	-12	NA	90865971	90876071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_90866334_90866891_90867231_90873304_90873404_90873484_90873608_90874035_90874090_90875184_90875385_90875790
transcript_32089.known	chr2	+	1636	12	FSM	ENSMUSG00000002102.16	ENSMUST00000067663.14	1636	12	0	0	0	0	multi-exon	FALSE	canonical	3	1724	junction_1	113.356309451931	1504	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACAGTCTTTCTCAGCCT	NA	False	NA	18	True	AATAAA	-19	NA	90884353	90889777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_90884677_90884919_90885004_90885323_90885450_90885802_90885908_90885992_90886056_90886249_90886388_90887002_90887147_90887256_90887406_90888109_90888207_90888354_90888501_90889390_90889473_90889598
transcript_321.known	chr1	+	1272	7	FSM	ENSMUSG00000056763.17	ENSMUST00000117415.8	1272	7	0	0	0	0	multi-exon	FALSE	canonical	2	35	junction_1	34.3640639169597	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAAAAAACCCCCAAATTG	NA	False	NA	NA	False	NA	NA	NA	10108486	10137343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_10108570_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650
transcript_32102.known	chr2	+	2034	5	FSM	ENSMUSG00000002111.9	ENSMUST00000002180.8	2034	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	7.28010988928052	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAGTGTCTCATTCAAG	8617	False	NA	21	True	AGTAAA	-22	NA	90926440	90946101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_90927339_90929774_90929872_90943599_90943791_90944589_90944756_90945419
transcript_32104.known	chr2	+	4652	11	FSM	ENSMUSG00000002103.17	ENSMUST00000239169.2	4652	11	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_7	11.5134703716994	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGGTAAAGACTTATTTC	5060	False	NA	7	True	NA	NA	NA	91033256	91044442	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_91033394_91033945_91034042_91034584_91034672_91036100_91036254_91036354_91036454_91036532_91036623_91037061_91037195_91038161_91038245_91038384_91038492_91038605_91038782_91040951
transcript_32106.known	chr2	-	1557	10	FSM	ENSMUSG00000002109.15	ENSMUST00000028696.5	1557	10	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_8	17.7888854188351	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTAGGGTTGGAGCAGGG	2997	False	NA	NA	False	NA	NA	NA	91067327	91042200	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91064645_91065159_91065297_91067034
transcript_32108.known	chr2	-	2228	9	FSM	ENSMUSG00000002109.15	ENSMUST00000111352.8	2228	9	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_7	15.7594217850783	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCCTTTGTATCTAACTA	3094	False	NA	-57	True	AATAAA	-4	NA	91067230	91041947	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_91042358_91042624_91042671_91042794_91042960_91047010_91047154_91047397_91047576_91047651_91047752_91049088_91049235_91064452_91065297_91067034
transcript_3211.nic	chr1	-	1771	7	NIC	ENSMUSG00000026492.12	novel	2449	8	NA	NA	17	305	combination_of_known_junctions	FALSE	canonical	2	8	junction_6	27.6008252694653	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTACTGCACATGCGCACA	7895	False	NA	NA	False	NA	NA	NA	179373815	179356191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_179356920_179358868_179359030_179359629_179359693_179361197_179361288_179365263_179365413_179369871_179370023_179373386
transcript_32116.known	chr2	+	1859	11	FSM	ENSMUSG00000027257.14	ENSMUST00000168916.8	1859	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	24.287651183266	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCGTCTTTTGATAGCC	4750	False	NA	20	True	AATAAA	-17	NA	91087157	91095024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_91087272_91090212_91090273_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
transcript_32117.nic	chr2	+	1798	10	NIC	ENSMUSG00000027257.14	novel	1862	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_1	17.8519286920123	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGCGTCTTTTGATAGC	4750	False	NA	19	True	AATAAA	-16	NA	91087157	91095023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_91087272_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
transcript_32118.known	chr2	+	1993	11	FSM	ENSMUSG00000027257.14	ENSMUST00000111349.9	1993	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	26.7037450557033	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCGTCTTTTGATAGCC	5266	False	NA	20	True	AATAAA	-17	NA	91087673	91095024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_91087922_91090212_91090273_91090515_91090607_91090748_91090906_91091515_91091752_91091855_91092012_91093112_91093289_91093403_91093525_91093631_91093769_91094109_91094232_91094535
transcript_32119.known	chr2	-	2896	9	FSM	ENSMUSG00000040591.19	ENSMUST00000064652.14	2896	9	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	37.0082338811243	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGGAAACGACAAGGCTGG	NA	False	NA	NA	False	NA	NA	NA	91274967	91105412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_91107480_91109534_91109599_91112090_91112201_91112809_91113006_91114579_91114666_91135093_91135179_91214073_91214205_91252210_91252314_91274913
transcript_32122.known	chr2	-	1977	9	FSM	ENSMUSG00000040591.19	ENSMUST00000102594.11	1977	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_5	19.7673974007708	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATGACTGCCTGCTCCAAG	NA	False	NA	NA	False	AATAAA	-14	NA	91274987	91108174	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_91109303_91109534_91109599_91112090_91112201_91112809_91113006_91114579_91114666_91135093_91135179_91214073_91214205_91252210_91252314_91274913
transcript_32126.known	chr2	-	307	3	FSM	ENSMUSG00000040591.19	ENSMUST00000139490.8	307	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	64	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATTTTCTTTTTTCTTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	91274982	91249128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_91249264_91252210_91252314_91274913
transcript_32128.known	chr2	+	3068	16	FSM	ENSMUSG00000027255.15	ENSMUST00000080008.13	3068	16	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_10	19.1619994317457	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCCTCTCCGTCCTGCCT	5502	False	NA	NA	False	AATAAA	-25	NA	91095318	91107276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_91095750_91095916_91096036_91096570_91096644_91097469_91097602_91097680_91097762_91098501_91098584_91098796_91098854_91099796_91099850_91100277_91100415_91100502_91100635_91103885_91104015_91104097_91104233_91105139_91105267_91105417_91105512_91105620_91105740_91106109
transcript_3213.known	chr1	+	4709	11	FSM	ENSMUSG00000038949.9	ENSMUST00000040706.9	4709	11	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_8	8.09691299199886	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTCCGAGAATTTATTTG	NA	False	NA	NA	False	TTTAAA	-17	NA	179373934	179455043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_179374182_179406902_179407334_179420249_179420432_179429266_179429298_179432083_179432171_179432517_179432633_179433812_179433835_179434001_179434099_179437350_179438232_179450331_179450468_179452563
transcript_32131.known	chr2	+	6665	44	FSM	ENSMUSG00000040549.17	ENSMUST00000111338.10	6665	44	0	0	0	0	multi-exon	TRUE	canonical	3	508	junction_5	59.4884084586321	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCCATTTCCCAAAATGCTC	NA	False	NA	11	True	AATAAA	-16	NA	91357106	91451009	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_91357196_91376666_91376761_91379118_91379313_91380896_91381104_91385611_91385784_91386844_91386978_91387919_91388021_91389393_91389508_91391151_91391257_91393098_91393189_91393293_91393459_91394664_91394794_91395965_91396149_91398481_91398596_91398981_91399093_91400524_91400618_91402692_91402879_91403317_91403413_91406360_91406419_91406507_91406634_91407908_91408049_91408379_91408555_91409767_91409882_91411454_91411584_91416066_91416262_91416582_91416719_91419013_91419103_91422010_91422137_91425027_91425178_91425655_91425860_91426032_91426169_91426706_91426901_91429550_91429724_91430985_91431160_91431350_91431472_91436590_91436771_91437789_91437978_91443084_91443161_91445317_91445507_91445586_91445725_91446138_91446223_91446645_91446806_91450032_91450185_91450326
transcript_32132.nic	chr2	-	2003	13	ISM	ENSMUSG00000027249.16	ENSMUST00000028681.15	1988	14	361	0	342	0	3prime_fragment	FALSE	canonical	2	10	junction_12	3.05845821725043	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCAGTGTGCCCAATGC	NA	False	NA	NA	False	AATAAA	-15	NA	91466398	91455664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_91455919_91456046_91456118_91458666_91458849_91459004_91459179_91459495_91459664_91460294_91460422_91460497_91460612_91460853_91461172_91463320_91463458_91463535_91463642_91465243_91465295_91465515_91465541_91466122
transcript_32136.known	chr2	-	1988	14	FSM	ENSMUSG00000027249.16	ENSMUST00000028681.15	1988	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	5.12333101702976	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCAGTGTGCCCAATGC	NA	False	NA	NA	False	AATAAA	-15	NA	91466759	91455664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_91455919_91456046_91456118_91458666_91458849_91459004_91459179_91459495_91459664_91460294_91460422_91460497_91460612_91460853_91461172_91463320_91463458_91463535_91463642_91465243_91465295_91465515_91465541_91466122_91466287_91466662
transcript_3214.known	chr1	+	1948	12	FSM	ENSMUSG00000038936.14	ENSMUST00000040538.10	1948	12	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_9	16.3434218576322	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCCCCCTTTTTTGGT	NA	False	NA	12	True	AATAAA	-19	NA	179495774	179514754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_179496111_179498147_179498261_179503955_179504037_179505605_179505736_179506444_179506495_179507149_179507281_179508056_179508175_179508997_179509118_179509215_179509273_179511769_179511882_179513260_179513343_179514136
transcript_32140.known	chr2	+	2866	14	FSM	ENSMUSG00000027247.17	ENSMUST00000090614.11	2866	14	0	0	0	0	multi-exon	TRUE	canonical	3	46	junction_2	93.668116113923	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480566	91502671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_91480598_91482108_91482169_91484390_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
transcript_32142.known	chr2	+	3201	14	FSM	ENSMUSG00000027247.17	ENSMUST00000111329.8	3201	14	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	49.9501526672271	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480204	91502671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_91480598_91482108_91482169_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
transcript_32148.known	chr2	+	2883	13	FSM	ENSMUSG00000027247.17	ENSMUST00000111331.9	2883	13	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	81.5357368819887	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTTGGCTGTTTAGGAAG	NA	False	NA	NA	False	AATAAA	-19	NA	91480462	91502671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_91480598_91484417_91484553_91484780_91484877_91492642_91492731_91498541_91498674_91498830_91498918_91499073_91499173_91499530_91499639_91499729_91499807_91499996_91500075_91500490_91500620_91500810_91500915_91501056
transcript_32151.known	chr2	-	3604	17	FSM	ENSMUSG00000027244.15	ENSMUST00000028678.9	3604	17	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_7	76.9829526583646	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTCCTATTCCAAATGTC	NA	False	NA	-1	True	AATAAA	-19	NA	91540864	91504963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91512370_91512482_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
transcript_32154.known	chr2	-	3551	16	FSM	ENSMUSG00000027244.15	ENSMUST00000076803.12	3551	16	0	0	0	0	multi-exon	TRUE	canonical	3	217	junction_4	20.2170445141937	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTCCTATTCCAAATGTCT	NA	False	NA	0	True	AATAAA	-20	NA	91540921	91504962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_91506809_91509071_91509201_91509657_91509775_91510264_91510343_91510687_91510803_91511903_91512041_91515013_91515105_91515495_91515595_91516126_91516224_91516845_91516887_91518985_91519127_91520135_91520183_91522772_91522893_91524269_91524351_91526262_91526345_91540591
transcript_32164.nic	chr2	+	1589	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	-22	-535	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	34.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGCCAAAGAGTTTTGTT	3350	False	NA	NA	False	AAGAAA	-30	NA	91541174	91551355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_91541321_91542424_91543211_91550698
transcript_32166.nic	chr2	+	2124	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	34.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3350	False	NA	NA	False	NA	NA	NA	91541174	91551890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_91541321_91542424_91543211_91550698
transcript_32168.nic	chr2	+	1599	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	-7	-535	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	37.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAGCCAAAGAGTTTTGTT	3430	False	NA	NA	False	AAGAAA	-30	NA	91541254	91551355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_91541411_91542424_91543211_91550698
transcript_32169.nic	chr2	+	1742	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	-22	-472	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	37.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATTTATTTACTCATTTA	3350	False	NA	NA	False	AAGAAA	-15	NA	91541174	91551418	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_91541411_91542424_91543211_91550698
transcript_32170.nic	chr2	+	2214	3	NIC	ENSMUSG00000027243.9	novel	2308	3	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	37.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3350	False	NA	NA	False	NA	NA	NA	91541174	91551890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_91541411_91542424_91543211_91550698
transcript_32171.known	chr2	+	2308	3	FSM	ENSMUSG00000027243.9	ENSMUST00000090608.6	2308	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	26	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAAAAAAGAACT	3442	False	NA	NA	False	NA	NA	NA	91541266	91551890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_91541597_91542424_91543211_91550698
transcript_32176.known	chr2	+	5203	18	FSM	ENSMUSG00000040506.17	ENSMUST00000045705.14	5203	18	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_5	14.4832560525026	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGCTCCTGCTTATTTCT	NA	False	NA	7	True	ATTAAA	-19	NA	91560569	91749194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_91560725_91596791_91597046_91597401_91597461_91598034_91598219_91599259_91599433_91601255_91601323_91602635_91604093_91635368_91635456_91640374_91640555_91654804_91654886_91655596_91655698_91706060_91706172_91715945_91716135_91717168_91717324_91730842_91730983_91740641_91740735_91741758_91741953_91747671
transcript_32178.known	chr2	+	5021	19	FSM	ENSMUSG00000040506.17	ENSMUST00000099712.10	5021	19	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_7	21.1640418320005	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGGCTCCTGCTTATTTCT	NA	False	NA	7	True	ATTAAA	-19	NA	91560478	91749194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_91560725_91596791_91597046_91597401_91597461_91598034_91598219_91599259_91599433_91601255_91601323_91602635_91602783_91603055_91604093_91635368_91635456_91640374_91640555_91654804_91654886_91655596_91655698_91706060_91706172_91715945_91716135_91717168_91717324_91730842_91730983_91740641_91740735_91741758_91741953_91747671
transcript_32181.known	chr2	-	714	5	FSM	ENSMUSG00000027239.15	ENSMUST00000090602.6	714	5	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_4	939.630878324036	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTCACGCCCACACCAAG	NA	False	NA	NA	False	NA	NA	NA	91762044	91760310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91761878
transcript_32183.known	chr2	-	771	5	FSM	ENSMUSG00000027239.15	ENSMUST00000111309.8	771	5	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_4	1107.84859073792	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAAGCCCCTTCCCAGTT	NA	False	NA	NA	False	AATAAA	-42	NA	91762033	91760149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91761971
transcript_32184.known	chr2	-	1054	5	FSM	ENSMUSG00000027239.15	ENSMUST00000028672.13	1054	5	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	1100.19691419309	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762642	91760172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91762274
transcript_32185.known	chr2	-	773	5	FSM	ENSMUSG00000027239.15	ENSMUST00000069423.13	773	5	0	0	0	0	multi-exon	FALSE	canonical	3	1617	junction_4	477.436121381699	698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAAGCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	91762125	91760172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_91760461_91761162_91761325_91761440_91761600_91761716_91761794_91762038
transcript_32186.known	chr2	-	3393	31	FSM	ENSMUSG00000040479.13	ENSMUST00000239257.2	3393	31	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_30	54.3341104238908	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTTTTCTTTTTTTC	NA	False	NA	-5	True	AGTAAA	-16	NA	91795945	91763170	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_91763871_91764087_91764188_91764400_91764435_91764510_91764632_91765160_91765205_91765425_91765458_91766166_91766307_91766869_91766911_91767046_91767117_91767202_91767283_91767398_91767500_91767782_91767983_91768312_91768425_91768506_91768581_91768673_91768737_91768853_91768910_91769061_91769141_91769668_91769810_91769895_91770010_91770097_91770159_91770254_91770338_91770592_91770689_91770949_91771022_91771102_91771220_91771309_91771382_91772634_91772704_91772972_91773030_91774366_91774445_91774718_91774815_91775105_91775215_91795764
transcript_32188.known	chr2	-	2377	15	FSM	ENSMUSG00000040434.17	ENSMUST00000176774.8	2377	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	41.8854731039636	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGAGTGTTTTGTCTGT	NA	False	NA	0	True	NA	NA	NA	92201331	92195390	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199612_92199718_92199834_92200007_92200204_92200329_92200521_92200605_92200907_92201009_92201083_92201239_92201325
transcript_32189.known	chr2	-	2291	14	FSM	ENSMUSG00000040434.17	ENSMUST00000090582.11	2291	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	42.5506311706155	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTTCAATTTTTTTTA	NA	False	NA	-25	True	GGGGCT	-23	NA	92201378	92195415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_92195841_92195971_92196168_92196263_92196414_92196662_92196942_92197360_92197522_92197613_92197770_92197883_92198010_92198098_92198212_92199834_92200007_92200204_92200329_92200521_92200605_92200910_92201009_92201083_92201239_92201325
transcript_3219.known	chr1	-	8506	36	FSM	ENSMUSG00000026491.14	ENSMUST00000027768.14	8506	36	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_19	31.9958415665383	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTGTCAAGTTAATAATTA	NA	False	NA	-1	True	AATAAA	-19	NA	179631245	179572458	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_179574094_179574744_179574822_179576121_179576256_179579875_179581638_179583013_179583220_179585499_179585595_179587826_179587927_179590109_179590528_179591034_179591239_179593442_179593636_179595859_179595968_179596553_179596705_179596873_179597025_179598153_179598286_179598363_179598509_179602896_179603085_179603572_179603720_179605067_179605125_179605264_179605389_179607168_179607263_179608420_179608526_179609207_179609349_179610511_179610602_179611654_179611746_179612572_179612702_179613634_179613697_179614259_179614442_179614532_179614666_179615753_179615905_179617213_179617299_179617863_179617981_179619910_179620119_179621207_179621389_179623241_179623496_179626775_179626904_179630917
transcript_32193.known	chr2	+	1167	11	FSM	ENSMUSG00000027222.15	ENSMUST00000155891.8	1167	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	67.8416538713496	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCATGTGGCTCTGTGTCAT	NA	False	NA	20	True	AATAAA	-20	NA	92205020	92211561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_92205167_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
transcript_32194.known	chr2	+	1392	11	FSM	ENSMUSG00000027222.15	ENSMUST00000028650.9	1392	11	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	17.2869893272368	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGTGGCTCTGTGTCATC	NA	False	NA	21	True	AATAAA	-21	NA	92205650	92211562	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_92206021_92206215_92206252_92206971_92207049_92207774_92207909_92208035_92208137_92208937_92209019_92209140_92209294_92209378_92209452_92209560_92209681_92210754_92210820_92211380
transcript_32202.known	chr2	-	3976	12	FSM	ENSMUSG00000068742.12	ENSMUST00000090559.12	3976	12	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	10.1019595513375	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGTTGTGTAATCTATCT	NA	False	NA	NA	False	AGTAAA	-2	NA	92264388	92233990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_92236166_92241970_92242113_92242958_92243052_92243293_92243497_92243611_92243764_92243980_92244293_92246498_92246640_92252506_92252596_92253222_92253408_92254889_92255033_92257246_92257356_92264156
transcript_32203.known	chr2	-	2668	3	FSM	ENSMUSG00000049922.9	ENSMUST00000125276.2	2668	3	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_2	25.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAGATACAGCATGTTT	NA	False	NA	NA	False	AATAAA	-21	NA	92290883	92283111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_92285120_92289011_92289536_92290747
transcript_32204.known	chr2	-	3139	2	FSM	ENSMUSG00000049922.9	ENSMUST00000067631.7	3139	2	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGATACAGCATGTTTTAT	NA	False	NA	NA	False	AATAAA	-24	NA	92290139	92283108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_92285120_92289011
transcript_32206.known	chr2	+	2654	8	FSM	ENSMUSG00000068735.15	ENSMUST00000090554.11	2654	8	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_2	50.0424309757148	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACAATCTGCGTGGTGT	NA	False	NA	10	True	AAGAAA	-43	NA	93017928	93032094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_93018093_93027241_93027324_93027956_93028094_93028607_93028667_93028883_93028933_93029239_93029337_93029701_93029804_93030130
transcript_32207.known	chr2	-	1824	10	FSM	ENSMUSG00000027215.14	ENSMUST00000028644.11	1824	10	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_8	1.4229164972073	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGTCTGAAGAGGCGGTA	NA	False	NA	NA	False	ATTAAA	-17	NA	93292847	93249455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205_93264279_93267732_93267816_93273713_93273790_93292674
transcript_32208.known	chr2	-	1683	10	FSM	ENSMUSG00000027215.14	ENSMUST00000116457.9	1683	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	3.62433476228891	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATCCAGTCTGAAGAGG	NA	False	NA	NA	False	ATTAAA	-12	NA	93293291	93249460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_93250288_93250584_93250669_93250899_93251101_93252171_93252274_93260289_93260365_93260475_93260601_93264205_93264279_93267732_93267816_93273713_93273790_93293254
transcript_32211.known	chr2	-	2871	14	FSM	ENSMUSG00000027198.17	ENSMUST00000028623.13	2871	14	0	0	0	0	multi-exon	TRUE	canonical	3	390	junction_9	31.3157237855525	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGTCTAGAATGCTGGT	NA	False	NA	-11	True	ATTAAA	-19	NA	93652913	93525975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_93526617_93533538_93533622_93534827_93534957_93537578_93537723_93560502_93560670_93569914_93570105_93592897_93593030_93621354_93621449_93625979_93626120_93628516_93628713_93636369_93636487_93642241_93642332_93643743_93644310_93652731
transcript_32215.nic	chr2	-	1977	15	NIC	ENSMUSG00000040272.15	novel	3950	15	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_14	5.05682000583653	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAACTCTTCATTCTTTGTG	NA	False	NA	NA	False	NA	NA	NA	93680302	93665782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_93666174_93666274_93666429_93666532_93666676_93668355_93668498_93668584_93668631_93669492_93669583_93670367_93670469_93671653_93671732_93672209_93672308_93672893_93672961_93673263_93673334_93674547_93674619_93676091_93676152_93678261_93678535_93680109
transcript_3222.known	chr1	-	746	2	FSM	ENSMUSG00000026491.14	ENSMUST00000147137.2	746	2	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTCCTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	179631171	179626411	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_179626904_179630917
transcript_32221.nic	chr2	-	3041	15	NIC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-235	0	intron_retention	FALSE	canonical	1	2	junction_14	23.4539279161056	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGGCCTGCTTTATTT	NA	False	NA	-1	True	AATAAA	-22	NA	93699737	93685706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93698783
transcript_32222.known	chr2	-	2224	15	FSM	ENSMUSG00000075023.12	ENSMUST00000099690.4	2224	15	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_14	17.5243271145093	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCAGGCCTGCTTTATTTC	NA	False	NA	0	True	AATAAA	-23	NA	93699502	93685705	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93699366
transcript_32223.nnic	chr2	-	2616	15	NNC	ENSMUSG00000075023.12	novel	2224	15	NA	NA	-61637	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_14	11.1785143768512	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCAGGCCTGCTTTATTT	NA	False	NA	-1	True	AATAAA	-22	NA	93761139	93685706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_93686126_93687041_93687196_93687289_93687433_93688239_93688382_93688481_93688528_93689700_93689791_93691361_93691463_93691813_93691892_93692118_93692217_93693135_93693203_93693444_93693515_93694263_93694335_93694736_93694797_93696026_93696575_93760610
transcript_32226.nic	chr2	-	1542	11	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	43.1723291009415	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGAACATGTTTGTTCC	8794	False	NA	80	True	AATACA	-24	NA	93841156	93810894	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607_93840754_93841027
transcript_32227.nic	chr2	-	1401	11	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	43.1723291009415	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8848	False	NA	-7	True	ATTAAA	-20	NA	93841102	93810981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607_93840754_93841027
transcript_32228.known	chr2	-	1228	10	FSM	ENSMUSG00000040174.15	ENSMUST00000040005.13	1228	10	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_3	32.7210431781547	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8875	False	NA	-7	True	ATTAAA	-20	NA	93841075	93810981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
transcript_3223.known	chr1	-	4026	15	FSM	ENSMUSG00000026489.14	ENSMUST00000027766.13	4026	15	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	4.06390281902126	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAGGTCATTTTGTTTT	3865	False	NA	NA	False	AATAAA	-16	NA	180023585	179992802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_179995022_179995886_179995974_179996135_179996202_179996337_179996446_179996644_179996787_179996980_179997075_179997197_179997280_179997626_179997768_179997907_179997994_179999128_179999252_180001815_180001891_180006141_180006209_180006447_180006850_180009626_180009813_180023437
transcript_32231.nic	chr2	-	1366	10	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	49.5186708770752	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8794	False	NA	-7	True	ATTAAA	-20	NA	93841156	93810981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93840607_93840754_93841027
transcript_32236.nic	chr2	-	1222	9	NIC	ENSMUSG00000040174.15	novel	1228	10	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	40.6799628195504	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATGATTTGATCCAAAA	8792	False	NA	-7	True	ATTAAA	-20	NA	93841158	93810981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_93811323_93811860_93811960_93826527_93826738_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838488_93838787_93838938_93841027
transcript_32243.known	chr2	-	1395	10	FSM	ENSMUSG00000040174.15	ENSMUST00000111240.8	1395	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	50.3744007102177	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGAACATGTTTGTTCC	8798	False	NA	80	True	AATACA	-24	NA	93841152	93810894	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_93811323_93811860_93811960_93826527_93826738_93831769_93831859_93833397_93833502_93835077_93835126_93837191_93837227_93838383_93838472_93838768_93838938_93841027
transcript_32246.known	chr2	-	1902	11	FSM	ENSMUSG00000027195.11	ENSMUST00000028619.5	1902	11	0	0	0	0	multi-exon	TRUE	canonical	3	670	junction_5	45.0653969249135	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTATTTTTGATAGTGGAA	NA	False	NA	NA	False	AATAAA	-31	NA	93988309	93863033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93945337_93945414_93947774_93947822_93988054
transcript_32247.known	chr2	-	1758	10	FSM	ENSMUSG00000027195.11	ENSMUST00000127084.8	1758	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	235.021879727436	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTTGAAATGAAAGTGTATT	NA	False	NA	NA	False	AATAAA	-18	NA	93988254	93863046	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_93864007_93864271_93864422_93874217_93874284_93875705_93875788_93882598_93882634_93895898_93895944_93896753_93896819_93913511_93913620_93947774_93947822_93988054
transcript_3225.known	chr1	-	1997	11	FSM	ENSMUSG00000010609.16	ENSMUST00000111108.10	1997	11	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_10	6.79411510058521	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGTGTTTGGCCCCTTT	NA	False	NA	2	True	AATAAA	-19	NA	180083865	180054568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_180055294_180056407_180056527_180056950_180057053_180057406_180057491_180061175_180061275_180062553_180062775_180063475_180063544_180066437_180066580_180068295_180068511_180073178_180073323_180083787
transcript_32250.known	chr2	-	3408	20	FSM	ENSMUSG00000027194.17	ENSMUST00000094801.5	3408	20	0	0	0	0	multi-exon	TRUE	canonical	3	95	junction_1	34.6292592408193	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTTTTTAAATATAAAAAG	NA	False	NA	NA	False	NA	NA	NA	94237033	94158281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_94158831_94160862_94161017_94163137_94163398_94172971_94173143_94189095_94189283_94192684_94192910_94193044_94193123_94194610_94194777_94194918_94195035_94196866_94197014_94199657_94199771_94202081_94202243_94204862_94205003_94205426_94205572_94206374_94206485_94207945_94208078_94208338_94208451_94209033_94209204_94216436_94216527_94236851
transcript_32251.known	chr2	-	3736	14	FSM	ENSMUSG00000027193.13	ENSMUST00000028617.7	3736	14	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_1	163.356364354585	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAGATATTAGCATTTATT	NA	False	NA	44	True	NA	NA	NA	94268481	94242026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_94244127_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
transcript_32253.nnic	chr2	-	3726	14	NNC	ENSMUSG00000027193.13	novel	3736	14	NA	NA	-31	-46	at_least_one_novel_splicesite	FALSE	canonical	3	565	junction_1	211.688282609319	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTGTCTTAATGTGTT	NA	False	NA	-2	True	AATAAA	-18	NA	94268512	94242072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_94244132_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
transcript_32256.nnic	chr2	-	1950	14	NNC	ENSMUSG00000027193.13	novel	3736	14	NA	NA	-31	-1822	at_least_one_novel_splicesite	FALSE	canonical	3	565	junction_1	211.688282609319	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTGTCTGCAGCCTTGA	NA	False	NA	-7	True	NA	NA	NA	94268512	94243848	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_94244132_94248600_94248738_94249215_94249293_94251330_94251388_94251777_94251872_94252641_94252824_94253756_94253847_94255318_94255424_94255935_94256143_94257277_94257430_94257856_94257923_94258390_94258485_94260023_94260186_94268268
transcript_32258.known	chr2	+	2040	2	FSM	ENSMUSG00000045464.6	ENSMUST00000152313.2	2040	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTCAAGAATCCTAAGTTATA	NA	False	NA	NA	False	AATAAA	-16	NA	94236495	94242027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_94237312_94240803
transcript_32264.known	chr2	-	2273	7	FSM	ENSMUSG00000027165.17	ENSMUST00000111231.10	2273	7	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_5	14.4299072146089	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATACACTTCTCCTTATT	NA	False	NA	NA	False	NA	NA	NA	101459335	101391125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_101392700_101406356_101406497_101413865_101413933_101415588_101415661_101416656_101416815_101440868_101441021_101459225
transcript_32265.known	chr2	+	6169	8	FSM	ENSMUSG00000027164.9	ENSMUST00000004949.8	6169	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	13.2603444409969	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTTGCTGGTTATGTAGAAT	NA	False	NA	NA	False	TATAAA	-14	NA	101508784	101532014	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_101508966_101511169_101511373_101514823_101515142_101518808_101518960_101520400_101520560_101521772_101521845_101524599_101524678_101527007
transcript_32268.known	chr2	-	2290	9	FSM	ENSMUSG00000032841.16	ENSMUST00000043845.14	2290	9	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_4	1.6583123951777	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTTCATTTCCAGTGAG	977	False	NA	NA	False	AAAAAG	-30	NA	101628053	101546585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_101547812_101559768_101559896_101564949_101565091_101571631_101571724_101577070_101577129_101588854_101588904_101601279_101601361_101602474_101602754_101627816
transcript_32269.nnic	chr2	+	1058	7	NNC	ENSMUSG00000027163.14	novel	1191	6	NA	NA	-1	-4	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_6	63.08900238728	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGATGCTGGTCGTGGT	NA	False	NA	25	True	AATAAA	-21	NA	101716590	101731987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_101716665_101725479_101725606_101727384_101727525_101729212_101729248_101730213_101730318_101731272_101731439_101731574
transcript_3227.known	chr1	+	3873	23	FSM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	0	0	0	0	multi-exon	FALSE	canonical	3	1402	junction_6	226.960257925668	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCGTGTTGTGTGCCTCA	3147	False	NA	10	True	ATTAAA	-18	NA	180396493	180428819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097_180408201_180410322_180410440_180411294_180411472_180413407_180413556_180414825_180414967_180415485_180415726_180415923_180415993_180416214_180416348_180416962_180417159_180418782_180418912_180420412_180420497_180421607_180421731_180422219_180422349_180424854_180424954_180425775_180425929_180426517_180426646_180427157_180427220_180427660_180427776_180428014
transcript_32270.known	chr2	+	1191	6	FSM	ENSMUSG00000027163.14	ENSMUST00000028584.8	1191	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	9.72830920561225	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGCTGGTCGTGGTTCTT	NA	False	NA	29	True	AATAAA	-25	NA	101716597	101731991	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_101716665_101725479_101725606_101727384_101727525_101729212_101729248_101730213_101730318_101731272
transcript_32273.known	chr2	-	3833	6	FSM	ENSMUSG00000048058.18	ENSMUST00000058790.12	3833	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	7.56306816047562	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCGTGTGAATGGTTCT	NA	False	NA	-2	True	AATAAA	-18	NA	102016730	101780547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_101783521_101785173_101785520_101888251_101888387_101900277_101900404_101943877_101944025_102016624
transcript_32277.known	chr2	-	2506	11	FSM	ENSMUSG00000010914.11	ENSMUST00000011058.9	2506	11	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	20.370567002418	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTGATATGACATGCAAAA	NA	False	NA	NA	False	AATAAA	-15	NA	102903858	102851419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_102852615_102854509_102854575_102858620_102858780_102860622_102860682_102863507_102863656_102865559_102865735_102871387_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
transcript_32286.known	chr2	-	2078	5	FSM	ENSMUSG00000010914.11	ENSMUST00000111183.2	2078	5	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_1	7.44983221287567	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCCCTGTCTGTTATCT	NA	False	NA	NA	False	AATAAA	-25	NA	102903807	102869963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_102871487_102872538_102872739_102877065_102877167_102888841_102888923_102903634
transcript_32287.nnic	chr2	+	918	7	NNC	ENSMUSG00000010911.13	novel	919	7	NA	NA	-41	3	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_6	133.735331490556	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTGGAAATTTTCTTGA	4552	False	NA	22	True	AATAAA	-44	NA	102903978	102922986	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093_102922223_102922809
transcript_32288.known	chr2	+	919	7	FSM	ENSMUSG00000010911.13	ENSMUST00000011055.7	919	7	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_6	40.9691618442729	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGAAATTTTCTTGATGT	4593	False	NA	25	True	AATAAA	-21	NA	102904019	102922989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_102904187_102913299_102913401_102917457_102917507_102918905_102919024_102919747_102919884_102922093_102922262_102922809
transcript_32292.known	chr2	+	837	6	FSM	ENSMUSG00000010911.13	ENSMUST00000124540.8	837	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	142.218704817615	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTTTAAATGAGTTGGAA	4613	False	NA	12	True	AATAAA	-34	NA	102904039	102922976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_102904187_102913299_102913401_102918905_102919024_102919747_102919884_102922093_102922262_102922809
transcript_32294.nnic	chr2	+	608	4	NIC	ENSMUSG00000010911.13	novel	919	7	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_2	180.75397644312	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGAAATTTTCTTGATGT	4601	False	NA	25	True	AATAAA	-21	NA	102904027	102922989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_102904187_102913299_102913401_102922093_102922262_102922809
transcript_32295.known	chr2	-	2613	13	FSM	ENSMUSG00000027187.11	ENSMUST00000028610.10	2613	13	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_10	47.7368364636321	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCTGACTTTGGAGGTTC	NA	False	NA	NA	False	NA	NA	NA	103315505	103284193	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_103285167_103285422_103285507_103287194_103287303_103290586_103290718_103293631_103293771_103297421_103297575_103298038_103298231_103300643_103300770_103302110_103302216_103303295_103303427_103304674_103304786_103307093_103307266_103315317
transcript_32296.known	chr2	-	3879	29	FSM	ENSMUSG00000027185.16	ENSMUST00000028608.13	3879	29	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_25	29.5459474413003	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCCTGCAGTGCCTATAA	NA	False	NA	-9	True	AATAAA	-20	NA	103591615	103551600	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_103552274_103554536_103554621_103555433_103555508_103556008_103556108_103556464_103556585_103557060_103557234_103558147_103558259_103558344_103558442_103560592_103560642_103560854_103560989_103561651_103561769_103562317_103562393_103562498_103562601_103563263_103563381_103564088_103564186_103564719_103564871_103565210_103565336_103570097_103570235_103573388_103573488_103573608_103573703_103574630_103574765_103578323_103578432_103578530_103578646_103580566_103580629_103582924_103583048_103584403_103584576_103587513_103587606_103588015_103588139_103591393
transcript_32298.known	chr2	-	1639	4	FSM	ENSMUSG00000027185.16	ENSMUST00000127581.8	1639	4	0	0	0	0	multi-exon	FALSE	canonical	3	307	junction_1	12.4721912892465	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103591606	103583364	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_103584576_103587513_103587606_103588015_103588139_103591393
transcript_32299.known	chr2	-	6169	19	FSM	ENSMUSG00000027184.15	ENSMUST00000028607.13	6169	19	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_18	276.654863648277	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGCAGTGTTTAGAACAAAA	NA	False	NA	NA	False	AATAAA	-23	NA	103627994	103593285	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075_103627286_103627807
transcript_32302.known	chr2	-	4069	18	FSM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	0	0	0	0	multi-exon	FALSE	canonical	3	1559	junction_1	126.714184008996	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCTCATGTGTGGTTAT	NA	False	NA	-11	True	AATAAA	-17	NA	103627449	103595362	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_103597209_103598750_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
transcript_32306.nic	chr2	-	3509	17	ISM	ENSMUSG00000027184.15	ENSMUST00000111147.8	4069	18	13	2089	13	0	5prime_fragment	FALSE	canonical	3	1726	junction_3	108.266742354243	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATGAGTACTGGTGGAAT	NA	False	NA	-9	True	NA	NA	NA	103627436	103597451	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_103598815_103599147_103599249_103599779_103599975_103602041_103602193_103603013_103603164_103603318_103603430_103604078_103604141_103605761_103605871_103605954_103606111_103606278_103606366_103606449_103606503_103608307_103608446_103609508_103609592_103609677_103609917_103613300_103613388_103613487_103613551_103627075
transcript_32309.nic	chr2	+	2812	11	NIC	ENSMUSG00000027180.13	novel	2628	10	NA	NA	59	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_10	96.8347045227072	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAACCCTCTCAACTGTAT	NA	False	NA	0	True	NA	NA	NA	103858124	103887835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103886345
transcript_32310.known	chr2	+	4740	11	FSM	ENSMUSG00000027180.13	ENSMUST00000028603.10	4740	11	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_10	68.8773547691838	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAATGTTGCCCCACCAGA	NA	False	NA	NA	False	AATAAA	-19	NA	103858065	103893585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180_103885372_103890226
transcript_32313.known	chr2	+	3720	10	FSM	ENSMUSG00000027180.13	ENSMUST00000102565.4	3720	10	0	0	0	0	multi-exon	FALSE	canonical	3	344	junction_6	33.1058907144937	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTTATTTATTTATTT	NA	False	NA	14	True	NA	NA	NA	103858204	103887849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_103858312_103860688_103860779_103863940_103864105_103873248_103873364_103876002_103876208_103878278_103878325_103880615_103880701_103881478_103881602_103883709_103883826_103885180
transcript_32318.known	chr2	+	555	5	FSM	ENSMUSG00000068686.13	ENSMUST00000111131.9	555	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	30.2933573576783	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAACAATAAAATTTGAGCC	NA	False	NA	NA	False	NA	NA	NA	103900193	103921505	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_103900265_103909202_103909282_103911341_103911444_103920473_103920620_103921348
transcript_32319.known	chr2	+	436	4	FSM	ENSMUSG00000068686.13	ENSMUST00000111132.8	436	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	23.6690139681023	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTAACTGTCTTGGCTACA	NA	False	NA	NA	False	NA	NA	NA	103900193	103921532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_103900265_103909202_103909282_103911341_103911444_103921348
transcript_3232.nic	chr1	+	834	5	ISM	ENSMUSG00000026496.12	ENSMUST00000027777.12	3873	23	-64	20674	-59	1419	5prime_fragment	FALSE	canonical	3	1772	junction_3	58.6062070091556	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAATCTAAGAAAGGGAAGG	3083	False	NA	NA	False	NA	NA	NA	180396429	180408145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_180396719_180401216_180401383_180405147_180405264_180406718_180406934_180408097
transcript_32325.known	chr2	+	681	5	FSM	ENSMUSG00000032679.13	ENSMUST00000153312.2	681	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	94.0063162771524	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCATCTGTATTAATTTAG	NA	False	NA	-48	True	NA	NA	NA	103926184	103944608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_103926273_103928069_103928190_103934515_103934595_103941084_103941190_103944319
transcript_32334.known	chr2	+	1691	4	FSM	ENSMUSG00000032679.13	ENSMUST00000040423.12	1691	4	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	38.5082963644055	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGATTATCTTGACTCTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	103926145	103945699	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_103926273_103934515_103934595_103941084_103941190_103944319
transcript_32349.nnic	chr2	+	1281	4	NNC	ENSMUSG00000086454.8	novel	536	3	NA	NA	-45	85	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	214.187353086549	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGAAGCTAGAAGT	NA	False	NA	-3	True	NA	NA	NA	104389462	104399262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_104389595_104390068_104390321_104398205_104398836_104398995
transcript_3235.known	chr1	+	3160	15	FSM	ENSMUSG00000058729.14	ENSMUST00000192561.6	3160	15	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	15.1320716307033	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGTCTGAGAATCTTACT	NA	False	NA	9	True	AATAAA	-19	NA	180468714	180518252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_180468963_180475865_180475899_180478306_180478402_180479426_180479532_180486627_180486762_180489041_180489168_180493347_180493506_180494889_180495024_180496328_180496449_180496696_180496799_180501628_180501710_180508664_180508791_180515524_180515705_180515827_180515926_180516832
transcript_32352.nnic	chr2	+	1411	4	NNC	ENSMUSG00000086454.8	novel	677	3	NA	NA	-14	85	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	219.022068903265	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGAAGCTAGAAGT	NA	False	NA	-3	True	NA	NA	NA	104389493	104399262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_104389756_104390068_104390321_104398205_104398836_104398995
transcript_32354.nnic	chr2	+	1201	4	NNC	ENSMUSG00000086454.8	novel	536	3	NA	NA	-8	85	at_least_one_novel_splicesite	FALSE	canonical	3	101	junction_1	198.704694347052	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGAAGCTAGAAGT	NA	False	NA	-3	True	NA	NA	NA	104389499	104399262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_104389552_104390068_104390321_104398205_104398836_104398995
transcript_32357.nnic	chr2	+	1441	3	NNC	ENSMUSG00000086454.8	novel	536	3	NA	NA	-45	85	intron_retention	FALSE	canonical	3	58	junction_1	259.5	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAAAGAAGCTAGAAGT	NA	False	NA	-3	True	NA	NA	NA	104389462	104399262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_104389595_104390068_104390321_104398205
transcript_32358.known	chr2	+	677	3	FSM	ENSMUSG00000086454.8	ENSMUST00000136364.8	677	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	266	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAAGTGAACCTGTTCAGAC	NA	False	NA	NA	False	NA	NA	NA	104389523	104398398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_104389756_104390068_104390321_104398205
transcript_3236.known	chr1	-	600	2	FSM	ENSMUSG00000103156.2	ENSMUST00000193209.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCTCCAAGTACCACAGACC	NA	False	NA	NA	False	NA	NA	NA	180596221	180591061	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_180591486_180596045
transcript_32360.known	chr2	+	536	3	FSM	ENSMUSG00000086454.8	ENSMUST00000127350.2	536	3	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	238	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATCAGCATGAAGAATTAG	NA	False	NA	NA	False	NA	NA	NA	104389536	104398474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_104389552_104390068_104390321_104398205
transcript_32362.known	chr2	+	2817	21	FSM	ENSMUSG00000027176.9	ENSMUST00000028599.8	2817	21	0	0	0	0	multi-exon	TRUE	canonical	3	179	junction_7	45.0891062231222	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCCTGTTTCTTTGTATG	6900	False	NA	19	True	AATAAA	-20	NA	104420867	104495774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_104421048_104439215_104439318_104439435_104439532_104474633_104474667_104475323_104475422_104476744_104476812_104476953_104476989_104477068_104477196_104478514_104478593_104479797_104479961_104481986_104482097_104482789_104482907_104483348_104483424_104484505_104484650_104486033_104486137_104489610_104489681_104490863_104491060_104493638_104493793_104494413_104494509_104494641_104494703_104495061
transcript_32366.known	chr2	+	2589	3	FSM	ENSMUSG00000027176.9	ENSMUST00000122900.2	2589	3	0	0	0	0	multi-exon	FALSE	canonical	3	327	junction_1	20.5	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCGGTATTTCATGGTGT	6909	False	NA	NA	False	AATAAA	-22	NA	104420876	104441751	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_104421048_104439215_104439318_104439435
transcript_32367.known	chr2	-	630	3	FSM	ENSMUSG00000027175.11	ENSMUST00000132600.2	630	3	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_2	0.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTTTTAAAATAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	104542511	104535294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_104535547_104536700_104536888_104542320
transcript_32368.nnic	chr2	-	533	3	NNC	ENSMUSG00000027175.11	novel	630	3	NA	NA	-492	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	79.5	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTTTTTTAAAATAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	104543006	104535294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_104535547_104536700_104536888_104542912
transcript_32369.known	chr2	+	644	2	FSM	ENSMUSG00000027176.9	ENSMUST00000137961.2	644	2	0	0	0	0	multi-exon	FALSE	canonical	3	327	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGAGTGCTTTAGCCTTTT	6995	False	NA	4	True	ATTAAA	-16	NA	104420962	104439774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_104421048_104439215
transcript_32370.known	chr2	-	1801	9	FSM	ENSMUSG00000027173.8	ENSMUST00000028595.8	1801	9	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_7	14.7394029729837	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTACTCAGAATGGTGTG	NA	False	NA	-9	True	AATAAA	-24	NA	104573223	104552128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_104552464_104553220_104553300_104553383_104553510_104553652_104553796_104554914_104555127_104557466_104557657_104558427_104558556_104560528_104560920_104573026
transcript_32379.known	chr2	+	318	2	FSM	ENSMUSG00000045106.13	ENSMUST00000130611.2	318	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTCTTCCTTAATGATT	NA	False	NA	NA	False	NA	NA	NA	104847465	104848249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_104847549_104848014
transcript_32384.known	chr2	-	1283	11	FSM	ENSMUSG00000027170.13	ENSMUST00000028592.12	1283	11	0	0	0	0	multi-exon	FALSE	canonical	3	1722	junction_10	235.400531010446	1109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGACTAATCTAGCTAATT	2640	False	NA	-16	True	AGTAAA	-17	NA	104847425	104830000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_104830187_104830586_104830648_104831615_104831760_104835269_104835352_104836125_104836226_104837100_104837185_104843195_104843291_104843542_104843667_104844089_104844229_104845114_104845248_104847290
transcript_32388.nnic	chr2	-	2108	6	NNC	ENSMUSG00000005973.7	novel	2720	6	NA	NA	-912	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_5	654.943234181406	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCATGTGTCTTGTGGTGT	NA	False	NA	-4	True	AATAAA	-19	NA	105226605	105217273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_105218372_105219321_105219522_105222314_105222376_105223933_105224113_105225023_105225218_105226229
transcript_32389.known	chr2	-	2720	6	FSM	ENSMUSG00000005973.7	ENSMUST00000006128.7	2720	6	0	0	0	0	multi-exon	FALSE	canonical	3	1454	junction_3	103.827549330609	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACAAGCTGGAGTTATCA	NA	False	NA	NA	False	NA	NA	NA	105229664	105216635	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_105218372_105219321_105219522_105222314_105222376_105223933_105224113_105225023_105225218_105229314
transcript_3239.known	chr1	-	481	4	FSM	ENSMUSG00000060743.13	ENSMUST00000159789.2	481	4	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_3	1244.59480242456	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATGCCAAAAGATATCCA	NA	False	NA	NA	False	NA	NA	NA	180641099	180630695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_180630771_180637681_180637836_180639363_180639552_180641035
transcript_32394.known	chr2	-	3048	10	FSM	ENSMUSG00000027167.12	ENSMUST00000122965.8	3048	10	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_4	20.3548762623191	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCTTTCTCTTACCCTG	NA	False	NA	-4	True	AATAAA	-30	NA	105734909	105531371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_105533207_105622560_105622668_105624861_105624971_105639610_105639800_105644610_105644696_105662475_105662616_105672576_105672706_105696303_105696426_105727246_105727283_105734613
transcript_324.known	chr1	+	1268	7	FSM	ENSMUSG00000056763.17	ENSMUST00000119714.8	1268	7	0	0	0	0	multi-exon	FALSE	canonical	2	91	junction_2	18.4157239577729	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAACCCA	NA	False	NA	NA	False	NA	NA	NA	10110009	10137327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_10110105_10115300_10115410_10117648_10117752_10128944_10129049_10134557_10134639_10135547_10135647_10136650
transcript_32401.known	chr2	+	955	7	FSM	ENSMUSG00000042670.6	ENSMUST00000037499.6	955	7	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_1	38.970073988468	336	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGACTATCTCATATTTG	NA	False	NA	NA	False	TATAAA	-22	NA	105734982	105795903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_105735076_105738668_105738775_105761063_105761198_105763609_105763699_105767336_105767464_105794524_105794636_105795608
transcript_32403.nnic	chr2	+	687	6	NIC	ENSMUSG00000042670.6	novel	955	7	NA	NA	-6	-140	combination_of_known_splicesites	FALSE	canonical	3	32	junction_2	170.067516004674	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTATTTATGTTTTAAAT	NA	False	NA	14	True	AATAAA	-15	NA	105734976	105795763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_105735076_105738668_105738775_105763609_105763699_105767336_105767464_105794524_105794636_105795608
transcript_32406.known	chr2	-	1197	5	FSM	ENSMUSG00000027166.15	ENSMUST00000102555.11	1197	5	0	0	0	0	multi-exon	TRUE	canonical	3	201	junction_2	6.37867541108654	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAGAGTATTCTTTATAG	NA	False	NA	1	True	TATAAA	-19	NA	105833894	105797053	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_105797440_105800792_105800862_105811326_105811466_105832273_105832421_105833438
transcript_32409.known	chr2	-	697	4	FSM	ENSMUSG00000027166.15	ENSMUST00000124163.8	697	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	95.3496489534993	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACAACTTTTGTTTTCTCT	NA	False	NA	-74	True	NA	NA	NA	105833608	105797128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_105797440_105800792_105800862_105832273_105832421_105833438
transcript_3241.known	chr1	-	888	4	FSM	ENSMUSG00000060743.13	ENSMUST00000081026.11	888	4	0	0	0	0	multi-exon	TRUE	canonical	1	55	junction_1	1176.16816635869	530	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCACACAGTAGATTCCATC	NA	False	NA	NA	False	AGTAAA	-42	NA	180641112	180630261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_180630768_180637681_180637836_180639363_180639515_180641035
transcript_32415.known	chr2	-	339	3	FSM	ENSMUSG00000027166.15	ENSMUST00000151581.2	339	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	102.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGACGCGTGCTCGCT	NA	False	NA	NA	False	AATACA	-39	NA	105833547	105797356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_105797440_105832273_105832421_105833438
transcript_32417.known	chr2	+	2848	7	FSM	ENSMUSG00000016386.16	ENSMUST00000111063.8	2848	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	4.49691252107735	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGTGCTGCGTGGTTGGGC	NA	False	NA	NA	False	AATAAA	-18	NA	106523613	106698701	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_106524167_106529632_106529881_106575044_106575227_106613977_106614204_106691832_106691949_106694999_106695114_106697292
transcript_32419.known	chr2	-	3337	5	FSM	ENSMUSG00000027122.16	ENSMUST00000028536.13	3337	5	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	43.6863823176056	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGACTTACTGTTTATTA	NA	False	NA	NA	False	AATAAA	-19	NA	106804769	106792871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804616
transcript_3242.known	chr1	-	807	3	FSM	ENSMUSG00000060743.13	ENSMUST00000159441.8	807	3	0	0	0	0	multi-exon	FALSE	canonical	3	2337	junction_2	191	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	180641168	180637312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_180637836_180639363_180639515_180641035
transcript_32420.nnic	chr2	-	3212	5	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	6	-89	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_4	54.0046294311886	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGCAGGCTTACTGTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	106804763	106792960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804646
transcript_32422.nnic	chr2	-	1399	5	NNC	ENSMUSG00000027122.16	novel	1363	5	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	134	junction_4	54.0046294311886	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATACATAAACTTTAATTTT	NA	False	NA	NA	False	AATAAA	-13	NA	106804763	106794773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_106795216_106795766_106795992_106797444_106797573_106799416_106799904_106804646
transcript_32423.nic	chr2	-	1995	4	NIC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	-3	6	intron_retention	FALSE	canonical	3	182	junction_3	33.9247533357118	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTTTAATTTTCTTGTC	NA	False	NA	NA	False	AATAAA	-19	NA	106804772	106794767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_106795992_106797444_106797573_106799416_106799904_106804616
transcript_32424.nnic	chr2	-	1956	4	NNC	ENSMUSG00000027122.16	novel	3337	5	NA	NA	6	6	intron_retention	FALSE	canonical	3	134	junction_3	55.0292851327566	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTTTAATTTTCTTGTC	NA	False	NA	NA	False	AATAAA	-19	NA	106804763	106794767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_106795992_106797444_106797573_106799416_106799904_106804646
transcript_32425.known	chr2	-	333	1	FSM	ENSMUSG00000083424.4	ENSMUST00000121779.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	59	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	108705603	108705270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_108705300_108705600
transcript_32426.known	chr2	-	1894	6	FSM	ENSMUSG00000057234.10	ENSMUST00000081631.10	1894	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	7.25534285888682	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATTTATTTATTTTAT	NA	False	NA	NA	False	AATAAA	-20	NA	109108635	108922641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_108923643_108961829_108962009_108967685_108967878_109021896_109022034_109104733_109105021_109108537
transcript_32429.known	chr2	+	3369	17	FSM	ENSMUSG00000027115.15	ENSMUST00000028527.8	3369	17	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_13	41.1567126967157	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTTGGTTTTCCTGTTTT	1376	False	NA	25	True	ATTAAA	-16	NA	109111082	109172092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194_109137360_109140891_109141014_109148219_109148456_109163600_109164013_109164665_109164774_109168911_109169022_109171502
transcript_3243.known	chr1	+	3213	7	FSM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_5	43.0761599444003	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTTGGAGTTTTTTGTT	NA	False	NA	22	True	AATAAA	-22	NA	180678691	180695678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_180678858_180683367_180683486_180685687_180685800_180687465_180687636_180688662_180688784_180689922_180690407_180693636
transcript_32430.known	chr2	+	1965	12	FSM	ENSMUSG00000027115.15	ENSMUST00000144924.8	1965	12	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_6	27.0380815007217	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAAAGACAATGTGAGGGA	1490	False	NA	NA	False	AATACA	-13	NA	109111196	109141179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_109111239_109118141_109118512_109120023_109120182_109122409_109122515_109123315_109123427_109125283_109125482_109126964_109127142_109128419_109128495_109128681_109128795_109133147_109133311_109137194_109137360_109140891
transcript_32431.nnic	chr2	+	1578	6	NNC	ENSMUSG00000027115.15	novel	3369	17	NA	NA	20307	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	149.324612840616	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGTTTGGTTTTCCTGTTTT	NA	False	NA	25	True	ATTAAA	-16	NA	109142674	109172092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_109142797_109148219_109148456_109163600_109164013_109164665_109164774_109168911_109169022_109171502
transcript_32432.known	chr2	+	4228	5	FSM	ENSMUSG00000027162.8	ENSMUST00000028583.8	4228	5	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_4	22.349496638627	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGGGGTAATGTGGTTG	NA	False	NA	31	True	AGTAAA	-21	NA	109721197	109731348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580_109726791_109727590
transcript_32440.known	chr2	+	746	4	FSM	ENSMUSG00000027162.8	ENSMUST00000151163.2	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	366	junction_1	18.4932420089069	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTTGAGAGAATCCCAGG	NA	False	NA	NA	False	NA	NA	NA	109721214	109727083	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_109721267_109724809_109724929_109725452_109725525_109726580
transcript_32441.nic	chr2	+	2375	2	ISM	ENSMUSG00000027162.8	ENSMUST00000151163.2	746	4	-50	1	-33	-1	intron_retention	FALSE	canonical	3	366	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCCTTGAGAGAATCCCAG	NA	False	NA	NA	False	NA	NA	NA	109721164	109727082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_109721267_109724809
transcript_32445.known	chr2	+	2070	6	FSM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	0	0	0	0	multi-exon	FALSE	canonical	3	423	junction_3	38.5455574612691	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATCACCATTTTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	109848161	109875661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_109848560_109852226_109852360_109862676_109862785_109870918_109871078_109871605_109871748_109874531
transcript_32452.nic	chr2	+	715	4	ISM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	-16	4683	-16	-84	5prime_fragment	FALSE	canonical	3	423	junction_3	48.8353241914998	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGGGAGAAAGAACATTTGCA	NA	False	NA	NA	False	AAAAAG	-12	NA	109848145	109870978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_109848560_109852226_109852360_109862676_109862785_109870918
transcript_32453.nic	chr2	+	799	4	ISM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	-16	4599	-16	0	5prime_fragment	FALSE	canonical	3	423	junction_3	48.8353241914998	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAGAGAAGGTATT	NA	False	NA	NA	False	AAAAAG	-18	NA	109848145	109871062	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_109848560_109852226_109852360_109862676_109862785_109870918
transcript_32454.nic	chr2	+	572	3	ISM	ENSMUSG00000027160.17	ENSMUST00000028580.12	2070	6	-16	12960	-16	-8361	5prime_fragment	FALSE	canonical	3	465	junction_2	38	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAGAAATGGAAGAACGT	NA	False	NA	NA	False	ATTAAA	-18	NA	109848145	109862701	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_109848560_109852226_109852360_109862676
transcript_32457.known	chr2	+	2275	14	FSM	ENSMUSG00000027134.5	ENSMUST00000028554.4	2275	14	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_5	5.67252278910358	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCAGAGGGTGGAATCATT	NA	False	NA	NA	False	NA	NA	NA	112069812	112077456	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_112070403_112071795_112071939_112072269_112072491_112072820_112072934_112073045_112073107_112073348_112073408_112073603_112073639_112074185_112074241_112074327_112074411_112074664_112074791_112075007_112075141_112076140_112076240_112076619_112076777_112077056
transcript_32459.known	chr2	+	1109	2	FSM	ENSMUSG00000027133.4	ENSMUST00000028553.4	1109	2	0	0	0	0	multi-exon	FALSE	canonical	3	3938	junction_1	0	927	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTCTGGTAGGAGATAT	NA	False	NA	NA	False	NA	NA	NA	112092270	112093614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_112092423_112092657
transcript_32464.known	chr2	-	983	5	FSM	ENSMUSG00000027131.4	ENSMUST00000028551.4	983	5	0	0	0	0	multi-exon	FALSE	canonical	3	778	junction_3	24.5395089600424	612	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAAGTTCCCCTTCAGT	4997	False	NA	-5	True	AATAAA	-29	NA	112198372	112193355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_112193700_112194136_112194298_112194496_112194651_112197746_112197862_112198163
transcript_32467.known	chr2	+	2886	10	FSM	ENSMUSG00000027132.4	ENSMUST00000028552.4	2886	10	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_7	47.4201082523719	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTGTGCATAGTTT	NA	False	NA	10	True	AATAAA	-20	NA	112209555	112244585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418_112236699_112237930_112238050_112238727_112238779_112238868_112238959_112239485_112239576_112240487_112240582_112242727
transcript_32468.known	chr2	+	1734	4	FSM	ENSMUSG00000027132.4	ENSMUST00000151257.2	1734	4	0	0	0	0	multi-exon	FALSE	canonical	3	500	junction_1	36.4264860903284	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGTTGT	NA	False	NA	NA	False	NA	NA	NA	112209570	112237863	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_112209703_112234505_112234622_112235102_112235144_112236418
transcript_32470.nnic	chr2	+	1157	5	NNC	ENSMUSG00000055943.6	novel	5826	5	NA	NA	-30	-4727	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_2	216.128867808074	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAAGATTATCTTCTGT	330	False	NA	2	True	ATTAAA	-15	NA	112285311	112297780	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_112285646_112289804_112289925_112293117_112293285_112295081_112295163_112297325
transcript_32471.known	chr2	+	5826	5	FSM	ENSMUSG00000055943.6	ENSMUST00000069747.6	5826	5	0	0	0	0	multi-exon	FALSE	canonical	3	432	junction_1	48.4355241532493	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTGTGTGTTCATG	360	False	NA	NA	False	AATAAA	-15	NA	112285341	112302507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_112285646_112289804_112289925_112293145_112293285_112295081_112295163_112297325
transcript_32473.nnic	chr2	+	961	5	NNC	ENSMUSG00000055943.6	novel	5826	5	NA	NA	-28	-4727	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	200.477398975545	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAAGATTATCTTCTGT	332	False	NA	2	True	ATTAAA	-15	NA	112285313	112297780	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_112285485_112289809_112289925_112293145_112293285_112295081_112295163_112297325
transcript_32475.nnic	chr2	+	907	5	NNC	ENSMUSG00000055943.6	novel	5826	5	NA	NA	31	-4727	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_1	188.575415948103	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAAGATTATCTTCTGT	391	False	NA	2	True	ATTAAA	-15	NA	112285372	112297780	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_112285485_112289804_112289925_112293145_112293285_112295081_112295163_112297325
transcript_32476.known	chr2	+	4735	6	FSM	ENSMUSG00000003604.15	ENSMUST00000003705.12	4735	6	0	0	0	0	multi-exon	FALSE	canonical	3	555	junction_4	26.4227174983952	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAACAAACACAA	NA	False	NA	NA	False	GATAAA	-35	NA	112323308	112464918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_112323567_112344794_112344973_112455499_112455571_112458093_112458190_112460084_112460422_112461123
transcript_32478.nnic	chr2	-	4568	13	NNC	ENSMUSG00000041219.15	novel	4458	14	NA	NA	-61	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	109.963219861107	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTTGTCTGCGTGTTGTA	5951	False	NA	-4	True	ATTAAA	-17	NA	113679067	113661836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_113662643_113663152_113664808_113665122_113665262_113667210_113667317_113667770_113667898_113670019_113670188_113671043_113671119_113671941_113672086_113672251_113672416_113673030_113673285_113673591_113673689_113675599_113675671_113678305
transcript_3248.nic	chr1	+	775	5	ISM	ENSMUSG00000038806.8	ENSMUST00000038091.8	3213	7	-107	6914	-107	-5054	5prime_fragment	FALSE	canonical	3	433	junction_2	47.0604664235279	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAGGAAATGCTTTTGG	NA	False	NA	NA	False	NA	NA	NA	180678584	180688764	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_180678858_180683367_180683486_180685687_180685800_180687465_180687636_180688662
transcript_32480.known	chr2	-	1316	1	FSM	ENSMUSG00000096006.2	ENSMUST00000178049.2	1316	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	7160	False	NA	NA	False	AGTAAA	-19	NA	113751486	113750170	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_113750200_113751500
transcript_32481.known	chr2	-	3112	9	FSM	ENSMUSG00000040383.17	ENSMUST00000131785.8	3112	9	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	25.6307920283397	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGCCAAA	7810	False	NA	NA	False	NA	NA	NA	114005819	113983223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_113985523_113986727_113986829_113988020_113988090_113989350_113989492_113992044_113992166_113996673_113996710_114000507_114000549_114003171_114003229_114005572
transcript_32482.nnic	chr2	-	1476	3	NNC	ENSMUSG00000040321.4	novel	4300	2	NA	NA	13	2190	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	2	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAGAAAACTCTGGCTT	NA	False	NA	NA	False	NA	NA	NA	114031937	114026850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_114028109_114031435_114031534_114031817
transcript_32483.known	chr2	-	4300	2	FSM	ENSMUSG00000040321.4	ENSMUST00000050668.4	4300	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGAGATTTTGTTTGGTGA	NA	False	NA	-4	True	AATAAA	-25	NA	114031950	114023941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_114028109_114031817
transcript_32486.known	chr2	-	2734	9	FSM	ENSMUSG00000057147.14	ENSMUST00000102542.10	2734	9	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_3	18.9670767383907	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGTTTTGTGTGAATGTC	NA	False	NA	-6	True	NA	NA	NA	114485445	114346900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_114348774_114350192_114350281_114353524_114353620_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
transcript_3249.known	chr1	+	2473	4	FSM	ENSMUSG00000066652.6	ENSMUST00000085797.6	2473	4	0	0	0	0	multi-exon	FALSE	canonical	3	1148	junction_3	71.1071179434395	499	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAGAGAGCGAGTCATCGA	NA	False	NA	21	True	AATAAA	-19	NA	180720672	180726668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_180720999_180721699_180721947_180722160_180722407_180725014
transcript_32490.known	chr2	-	3010	3	FSM	ENSMUSG00000057147.14	ENSMUST00000138975.2	3010	3	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_2	16	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATTTTTCTATAGAGCCA	NA	False	NA	NA	False	ATTAAA	-15	NA	114485386	114472555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_114475396_114478221_114478317_114485311
transcript_32491.known	chr2	-	2590	7	FSM	ENSMUSG00000057147.14	ENSMUST00000150447.8	2590	7	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	15.088627063675	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCAAAAACTTGGTCTTTTA	NA	False	NA	NA	False	AATAAA	-19	NA	114485445	114351707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_114353620_114366005_114366068_114398400_114398520_114399957_114400032_114475201_114475396_114478221_114478317_114485311
transcript_32495.known	chr2	+	2735	11	FSM	ENSMUSG00000040282.14	ENSMUST00000110918.3	2735	11	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_9	22.3015694514983	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTACCCTTCTACCTGGA	NA	False	NA	7	True	AATAAA	-17	NA	115412213	115609249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517544_115517651_115607382
transcript_32499.known	chr2	+	2770	11	FSM	ENSMUSG00000040282.14	ENSMUST00000166472.8	2770	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_9	96.2369991219593	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTACCCTTCTACCTGGA	NA	False	NA	7	True	AATAAA	-17	NA	115412196	115609249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_115412467_115461485_115461532_115462416_115462482_115469484_115469546_115473144_115473218_115500062_115500143_115500489_115500540_115505206_115505275_115516865_115516932_115517526_115517651_115607382
transcript_3250.known	chr1	+	1580	7	FSM	ENSMUSG00000026520.9	ENSMUST00000027802.9	1580	7	0	0	0	0	multi-exon	FALSE	canonical	3	1025	junction_3	51.6120679255884	821	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTAGTCTCACTGTGTAG	16	False	NA	32	True	NA	NA	NA	180731857	180735653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_180732096_180732308_180732380_180733438_180733619_180733727_180733950_180734159_180734253_180734354_180734519_180735041
transcript_32501.known	chr2	-	721	2	FSM	ENSMUSG00000086328.2	ENSMUST00000140185.2	721	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGATCTGAGTCTGTAC	NA	False	NA	NA	False	AATAAA	-20	NA	115897925	115896698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_115897100_115897605
transcript_32502.known	chr2	+	1710	3	FSM	ENSMUSG00000085316.2	ENSMUST00000126467.2	1710	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCACTTGGAAAGCATCC	NA	False	NA	NA	False	AATAAA	-18	NA	116730632	116743272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_116730813_116741201_116741318_116741858
transcript_32503.known	chr2	+	1861	8	FSM	ENSMUSG00000027349.6	ENSMUST00000028825.5	1861	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.1780301787479	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCACTGTGTCATGGCTTA	NA	False	NA	44	True	ATTAAA	-22	NA	117080219	117102021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_117080320_117088114_117088261_117089701_117089837_117090655_117090835_117093319_117093401_117094303_117094421_117098260_117098429_117101086
transcript_32504.nic	chr2	-	1140	5	ISM	ENSMUSG00000027347.19	ENSMUST00000178884.8	5104	17	4286	18099	4118	0	internal_fragment	FALSE	non_canonical	0	0	junction_3	18.2944663764757	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	117169072	117128573	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_117129097_117130923_117131056_117132441_117132503_117136256_117136365_117168756
transcript_32506.known	chr2	-	1673	11	FSM	ENSMUSG00000027344.15	ENSMUST00000028821.10	1673	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.92574776766556	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACCTGGCTTTATTGTCT	NA	False	NA	NA	False	NA	NA	NA	118087447	118035368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_118035656_118052806_118052942_118063384_118063541_118067394_118067506_118070872_118071031_118072123_118072217_118078775_118078873_118080286_118080442_118082119_118082301_118083766_118083900_118087280
transcript_32508.known	chr2	-	1025	6	FSM	ENSMUSG00000027344.15	ENSMUST00000028820.7	1025	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	2.68328157299975	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTCGGTTTTGTGTATA	NA	False	NA	NA	False	AATAAA	-21	NA	118087437	118075144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_118075447_118078775_118078873_118080286_118080442_118082119_118082301_118083766_118083900_118087280
transcript_32509.nic	chr2	+	3053	19	ISM	ENSMUSG00000005102.14	ENSMUST00000005233.12	5212	39	-28	31939	-28	-8995	5prime_fragment	FALSE	canonical	3	81	junction_8	8.9504810547317	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTTTTTCCTGATATTTA	NA	False	NA	30	True	AATACA	-41	NA	118219070	118273776	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_118219334_118231015_118231129_118235527_118235631_118238832_118238986_118241363_118241445_118243415_118243565_118247707_118247824_118251198_118251354_118252443_118252980_118257045_118257153_118258308_118258467_118261276_118261705_118262691_118262762_118265103_118265188_118266643_118266767_118269446_118269552_118271642_118271701_118272495_118272576_118273605
transcript_32510.known	chr2	-	798	5	FSM	ENSMUSG00000009549.15	ENSMUST00000009693.15	798	5	0	0	0	0	multi-exon	FALSE	canonical	3	1430	junction_1	23.7421039505769	148	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTGGTTTGTTTTTCTTG	NA	False	NA	-2	True	ATTAAA	-16	NA	118310192	118306330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_118306789_118307307_118307341_118309401_118309515_118309858_118309932_118310071
transcript_32513.known	chr2	+	3668	23	FSM	ENSMUSG00000040084.10	ENSMUST00000038341.8	3668	23	0	0	0	0	multi-exon	TRUE	canonical	3	422	junction_10	74.3091181573454	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTTGCTGGCAATTCA	NA	False	NA	15	True	AATAAA	-16	NA	118428691	118472072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118461425_118461560_118462239_118462381_118462891_118462993_118465608_118465759_118467180_118467324_118468881_118469057_118470113_118470221_118471568
transcript_32516.nic	chr2	+	2424	16	ISM	ENSMUSG00000040084.10	ENSMUST00000038341.8	3668	23	43	10393	43	-632	5prime_fragment	FALSE	canonical	3	422	junction_10	53.0531808659952	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCATATGCCCAAAGCAAA	NA	False	NA	NA	False	AATAAA	-20	NA	118428734	118461679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_118428943_118430618_118430766_118435894_118435955_118437024_118437170_118440263_118440461_118443055_118443223_118445411_118445627_118445924_118446017_118448186_118448417_118452615_118452729_118453550_118453667_118454761_118454812_118456503_118456562_118457333_118457443_118460383_118460647_118461425
transcript_32518.known	chr2	+	839	10	FSM	ENSMUSG00000027331.16	ENSMUST00000123104.2	839	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_7	167.506403046953	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACGAAGCCAGTGACTT	NA	False	NA	NA	False	NA	NA	NA	118644776	118664549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118661292_118661451_118662033_118662109_118664480
transcript_32520.known	chr2	+	4602	9	FSM	ENSMUSG00000027331.16	ENSMUST00000134661.8	4602	9	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_3	12.8038080273019	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAATTCACCCTCA	NA	False	NA	NA	False	AATAAA	-7	NA	118644483	118668177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_118644791_118644881_118644974_118648344_118648472_118649315_118649364_118653900_118654007_118654173_118654268_118659439_118659496_118662033_118662109_118664480
transcript_32524.known	chr2	+	3665	12	FSM	ENSMUSG00000027332.12	ENSMUST00000028807.6	3665	12	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_8	15.0382432594562	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGAAAAGTGGATGGGAAT	NA	False	NA	NA	False	AATAAA	-20	NA	118692434	118713390	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708141_118708247_118708355_118708429_118710933
transcript_32525.nnic	chr2	+	2029	11	NNC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	8	337	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_9	63.3978706267017	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCTGCGCCCAAAGCCG	NA	False	NA	45	True	ATTAAA	-17	NA	118692442	118711833	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708321_118708429_118710933
transcript_32526.nnic	chr2	+	1995	11	NIC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	8	337	combination_of_known_splicesites	FALSE	canonical	3	32	junction_9	56.9639359595174	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCTGCGCCCAAAGCCG	NA	False	NA	45	True	ATTAAA	-17	NA	118692442	118711833	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118708355_118708429_118710933
transcript_32527.nnic	chr2	+	1147	10	NNC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	8	313	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_9	89.5624480391499	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCCTGAGATCATAGAAC	NA	False	NA	NA	False	NA	NA	NA	118692442	118707760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706878_118707368_118707451_118707622
transcript_32528.nnic	chr2	+	1160	10	NNC	ENSMUSG00000027332.12	novel	3665	12	NA	NA	8	313	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	69.6920917631333	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGCCTGAGATCATAGAAC	NA	False	NA	NA	False	NA	NA	NA	118692442	118707760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_118692649_118699915_118700006_118700211_118700264_118701858_118702029_118703365_118703460_118703648_118703786_118705145_118705243_118706796_118706891_118707368_118707451_118707622
transcript_32529.known	chr2	+	2090	1	FSM	ENSMUSG00000074916.6	ENSMUST00000099546.6	2090	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCAACTCTGTAATTCCC	9712	False	NA	8	True	AATAAA	-19	NA	118756976	118759066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_118757000_118759100
transcript_32530.known	chr2	-	1870	4	FSM	ENSMUSG00000039983.14	ENSMUST00000036470.14	1870	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	9.0921211313239	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAAAAGATTTTCT	NA	False	NA	NA	False	NA	NA	NA	118859874	118848259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_118849646_118852549_118852707_118857618_118857869_118859797
transcript_32534.known	chr2	+	2706	3	FSM	ENSMUSG00000027324.2	ENSMUST00000028796.2	2706	3	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_2	2.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGATTCTGGTTCTCT	3255	False	NA	NA	False	CATAAA	-41	NA	118865270	118870250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_118865950_118867398_118867696_118868520
transcript_32537.known	chr2	+	5527	8	FSM	ENSMUSG00000027326.14	ENSMUST00000028799.12	5527	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	11.0822527732683	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTATAATTGTGTCTTGTG	7242	False	NA	NA	False	ATTAAA	-18	NA	118877630	118903400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_118878042_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603
transcript_32539.known	chr2	+	1573	8	FSM	ENSMUSG00000027326.14	ENSMUST00000152380.8	1573	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	17.907927784951	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAAATAATAGCCAT	7211	False	NA	NA	False	AATAAA	-28	NA	118877599	118899752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_118877705_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429_118896483_118898603
transcript_32543.nic	chr2	+	535	4	ISM	ENSMUSG00000027326.14	ENSMUST00000028799.12	5527	8	28	13315	28	-6368	5prime_fragment	FALSE	canonical	3	41	junction_1	14.6363322667334	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTCCCGAGTGCAAATGC	7270	False	NA	NA	False	NA	NA	NA	118877658	118890085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_118878042_118887761_118887813_118888835_118888876_118890024
transcript_32544.known	chr2	+	370	7	FSM	ENSMUSG00000027326.14	ENSMUST00000153300.8	370	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	18.7327698610394	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATTCAGACTCAGATGCAA	7239	False	NA	NA	False	NA	NA	NA	118877627	118896453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_118877708_118887761_118887813_118888835_118888876_118890024_118890085_118892840_118892903_118894525_118894579_118896429
transcript_32547.known	chr2	-	2249	13	FSM	ENSMUSG00000070730.12	ENSMUST00000094695.12	2249	13	0	0	0	0	multi-exon	TRUE	canonical	3	215	junction_12	29.1989107483291	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTTTTGACTGTTTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	118987515	118967481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_118968234_118968827_118968909_118969519_118969574_118969832_118969932_118970524_118970603_118970740_118970817_118973108_118973170_118976818_118976922_118977789_118978076_118983856_118984001_118984370_118984564_118986838_118987033_118987387
transcript_32551.known	chr2	+	3368	10	FSM	ENSMUSG00000027323.11	ENSMUST00000028795.10	3368	10	0	0	0	0	multi-exon	FALSE	canonical	3	651	junction_5	89.2808026867762	548	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTACAAGTCCTATGCTCT	NA	False	NA	NA	False	AATAAA	-25	NA	118943287	118967771	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964554_118964685_118964867_118964990_118965529
transcript_32558.known	chr2	+	2975	9	FSM	ENSMUSG00000027323.11	ENSMUST00000152327.8	2975	9	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_7	266.546870878275	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATACTCCAGGCACCTC	NA	False	NA	NA	False	AAAACA	-41	NA	118943297	118967518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_118943516_118946792_118946882_118949088_118949227_118951906_118952025_118954264_118954357_118957543_118957639_118961984_118962099_118964867_118964990_118965529
transcript_32567.known	chr2	+	645	3	FSM	ENSMUSG00000046814.4	ENSMUST00000057454.4	645	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTTGTGCAGTGACTC	1208	False	NA	20	True	AATAAA	-27	NA	118998253	119002871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_118998355_119000156_119000252_119002422
transcript_32568.nnic	chr2	-	1306	12	NNC	ENSMUSG00000034278.4	novel	1008	11	NA	NA	-67	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	116.975733868395	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTACTTTTCTTCCTCTTG	NA	False	NA	-4	True	AATAAA	-15	NA	119039343	119002980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_119003167_119005391_119005623_119009832_119009944_119010365_119010447_119010967_119011046_119011406_119011451_119014079_119014177_119014397_119014484_119016176_119016265_119016509_119016569_119016826_119016897_119039168
transcript_3257.known	chr1	+	2717	5	FSM	ENSMUSG00000026520.9	ENSMUST00000194253.2	2717	5	0	0	0	0	multi-exon	FALSE	canonical	3	1107	junction_1	27.6450718935582	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTAGTCTCACTGTGTA	46	False	NA	31	True	NA	NA	NA	180731887	180735652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_180732096_180732308_180733950_180734159_180734253_180734354_180734519_180735041
transcript_32572.known	chr2	+	2008	11	FSM	ENSMUSG00000068580.12	ENSMUST00000090174.11	2008	11	0	0	0	0	multi-exon	FALSE	canonical	1	23	junction_1	26.2152627299442	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGATGTTTTTTCTGTC	4288	False	NA	8	True	NA	NA	NA	119039114	119047530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_119039665_119040962_119041085_119041261_119041313_119041661_119041781_119041878_119042025_119042386_119042496_119045314_119045522_119045934_119046009_119046689_119046789_119046912_119047023_119047109
transcript_32573.known	chr2	-	1008	11	FSM	ENSMUSG00000034278.4	ENSMUST00000038439.4	1008	11	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	69.3010822426317	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTACTTTTCTTCCTCTTG	NA	False	NA	-4	True	AATAAA	-15	NA	119039276	119002980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_119003167_119009832_119009944_119010365_119010447_119010967_119011046_119011406_119011451_119014079_119014177_119014397_119014484_119016176_119016265_119016509_119016569_119016826_119016897_119039168
transcript_32581.known	chr2	-	790	5	FSM	ENSMUSG00000027317.9	ENSMUST00000110820.3	790	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	21.0297408448131	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACCTTTAGGAACCCAGA	NA	False	NA	NA	False	NA	NA	NA	119060346	119048620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_119048905_119049106_119049140_119049244_119049329_119058237_119058303_119060022
transcript_32583.nnic	chr2	-	1231	5	NNC	ENSMUSG00000027317.9	novel	787	4	NA	NA	-7382	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	17.007351351695	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGGAGTGTGGTGTGTAT	NA	False	NA	NA	False	GATAAA	-18	NA	119067769	119048599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_119048905_119049106_119049140_119049244_119049329_119060022_119060323_119067260
transcript_32584.known	chr2	-	787	4	FSM	ENSMUSG00000027317.9	ENSMUST00000076084.6	787	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	4.96655480858378	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGGAGTGTGGTGTGTAT	NA	False	NA	NA	False	GATAAA	-18	NA	119060387	119048599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_119048905_119049106_119049140_119049244_119049329_119060022
transcript_32587.known	chr2	+	2273	11	FSM	ENSMUSG00000027315.14	ENSMUST00000028783.14	2273	11	0	0	0	0	multi-exon	TRUE	canonical	3	163	junction_1	46.3102580429002	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTTTGTTGAGCTC	NA	False	NA	13	True	AATAAA	-1	NA	119067842	119079995	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_119067954_119068181_119068725_119075635_119075764_119075990_119076130_119076217_119076389_119076540_119076568_119076839_119076966_119077077_119077129_119078491_119078663_119078836_119078885_119079237
transcript_32588.nnic	chr2	-	1761	4	NNC	ENSMUSG00000034226.8	novel	1703	3	NA	NA	-6748	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_3	7.54247233265651	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTGGTCTCCT	4257	False	NA	-5	True	AATAAA	-17	NA	119108501	119099681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_119100969_119101162_119101222_119101396_119101722_119108411
transcript_32589.known	chr2	-	1703	3	FSM	ENSMUSG00000034226.8	ENSMUST00000037360.8	1703	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTGGTCTCCT	NA	False	NA	-5	True	AATAAA	-17	NA	119101753	119099681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_119100969_119101162_119101222_119101396
transcript_3259.known	chr1	+	1620	4	FSM	ENSMUSG00000038793.9	ENSMUST00000037361.9	1620	4	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	33.0790299468141	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTTTTTGTTTCCTTATT	NA	False	NA	8	True	AATAAA	-17	NA	180762586	180765965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_180762925_180764111_180764359_180764573_180764820_180765176
transcript_32590.known	chr2	+	4054	5	FSM	ENSMUSG00000034216.13	ENSMUST00000037280.5	4054	5	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	7.17635004720366	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTCCCTCTTCCTAAATC	6377	False	NA	NA	False	TATAAA	-13	NA	119119222	119128934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_119119612_119120633_119120776_119123178_119123271_119123399_119125271_119127374
transcript_32591.known	chr2	+	3194	4	FSM	ENSMUSG00000034216.13	ENSMUST00000139367.8	3194	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	5.71547606649408	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6375	False	NA	NA	False	NA	NA	NA	119119220	119125968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_119119612_119120633_119120776_119123178_119123271_119123399
transcript_32592.known	chr2	+	1637	3	FSM	ENSMUSG00000027313.4	ENSMUST00000028780.4	1637	3	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_2	33	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCAAGTAGGGAAAGCCTC	7152	False	NA	81	True	GATAAA	-13	NA	119181709	119184862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_119182118_119182837_119182874_119183669
transcript_32593.nnic	chr2	+	2453	7	NNC	ENSMUSG00000014077.14	novel	2609	7	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	68.6312610987151	79	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTGAGTTTTACCCGG	NA	False	NA	NA	False	AATAAA	-25	NA	119378205	119417508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_119378399_119391211_119391285_119397130_119397212_119402248_119402259_119411185_119411238_119415010_119415134_119415587
transcript_32594.known	chr2	+	2609	7	FSM	ENSMUSG00000014077.14	ENSMUST00000014221.13	2609	7	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_2	25.1197133741609	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTGAGTTTTACCCGG	NA	False	NA	NA	False	AATAAA	-25	NA	119378177	119417508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_119378399_119391211_119391285_119397130_119397212_119402248_119402377_119411175_119411238_119415010_119415134_119415587
transcript_32595.nnic	chr2	+	2513	6	NIC	ENSMUSG00000014077.14	novel	2609	7	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_2	75.1654175801612	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTTGAGTTTTACCCGG	NA	False	NA	NA	False	AATAAA	-25	NA	119378192	119417508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_119378399_119391211_119391285_119402248_119402377_119411175_119411238_119415010_119415134_119415587
transcript_32596.known	chr2	+	1381	3	FSM	ENSMUSG00000085438.2	ENSMUST00000147425.2	1381	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_2	178.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTTGGACAGATTTT	NA	False	NA	NA	False	TATAAA	-29	NA	119424777	119431227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_119424916_119426739_119426824_119430068
transcript_32601.known	chr2	+	8300	3	FSM	ENSMUSG00000085438.2	ENSMUST00000153581.2	8300	3	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_2	41.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGTTGTTGCTTTTAA	NA	False	NA	24	True	AATAAA	-30	NA	119424783	119437983	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_119424916_119426739_119426993_119430068
transcript_32607.nic	chr2	+	1440	2	ISM	ENSMUSG00000085438.2	ENSMUST00000147425.2	1381	3	-6	3192	-6	-3192	5prime_fragment	FALSE	canonical	3	428	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATCGAAGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	119424771	119428035	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_119424916_119426739
transcript_3261.known	chr1	+	3306	23	FSM	ENSMUSG00000026519.17	ENSMUST00000027800.15	3306	23	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_1	9.65307299163423	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCATGCTTCTTCCGGGT	NA	False	NA	15	True	AATAAA	-31	NA	180770023	180802677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_180770125_180774130_180774331_180776377_180776458_180779696_180779761_180780545_180780584_180782372_180782516_180783557_180783610_180783984_180784094_180785541_180785613_180787990_180788072_180788299_180788424_180788612_180788747_180789911_180790050_180790563_180790718_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
transcript_32610.known	chr2	+	2960	11	FSM	ENSMUSG00000027306.16	ENSMUST00000068225.15	2960	11	0	0	0	0	multi-exon	FALSE	canonical	3	927	junction_3	141.2501327433	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATCTATAGTTCAGTAC	NA	False	NA	NA	False	AATAAA	-21	NA	119448778	119480641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_119449377_119454598_119454668_119458027_119458175_119460817_119460987_119464200_119464300_119465958_119466069_119468928_119469045_119470057_119470216_119474264_119474382_119477570_119477680_119479373
transcript_32612.known	chr2	+	3526	10	FSM	ENSMUSG00000027306.16	ENSMUST00000028771.8	3526	10	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	379.300265433633	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAACTAAAAAATATTGC	NA	False	NA	NA	False	NA	NA	NA	119449197	119481725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_119449377_119454598_119454668_119458027_119458175_119460817_119460987_119465958_119466069_119468928_119469045_119470057_119470216_119474264_119474382_119477570_119477680_119479373
transcript_32615.known	chr2	-	1082	6	FSM	ENSMUSG00000072980.4	ENSMUST00000123818.2	1082	6	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_4	35.3870032639103	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTTTGCTTATGTAAAATA	7480	False	NA	NA	False	NA	NA	NA	119448950	119440451	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_119440846_119442232_119442337_119443492_119443575_119446012_119446136_119448334_119448402_119448638
transcript_32616.nnic	chr2	-	1469	5	NIC	ENSMUSG00000072980.4	novel	1082	6	NA	NA	-51	0	combination_of_known_splicesites	FALSE	canonical	3	58	junction_3	272.52247613729	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAGAATT	7429	False	NA	NA	False	NA	NA	NA	119449001	119439992	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_119440846_119442232_119442337_119443492_119443575_119448334_119448402_119448638
transcript_32618.known	chr2	-	1778	5	FSM	ENSMUSG00000072980.4	ENSMUST00000110805.3	1778	5	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_4	27.7758888246623	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAGAATT	7480	False	NA	NA	False	NA	NA	NA	119448950	119439992	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_119440846_119442232_119442337_119443492_119443575_119446012_119446136_119448334
transcript_3262.nnic	chr1	+	1963	10	NNC	ENSMUSG00000026519.17	novel	3306	23	NA	NA	5168	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	15.1836494255019	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTGCCTCTCATGCTT	NA	False	NA	6	True	AATAAA	-22	NA	180792799	180802668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_180792955_180793104_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
transcript_32620.nic	chr2	-	1502	5	NIC	ENSMUSG00000027305.10	novel	1478	5	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_4	131.115407180087	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493309	119485926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493073
transcript_32621.known	chr2	-	1451	5	FSM	ENSMUSG00000027305.10	ENSMUST00000028768.2	1451	5	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	75.083287088406	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTACCCTCAGCCTTTTTC	NA	False	NA	-6	True	AATAAA	-16	NA	119493279	119485931	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493089
transcript_32622.nnic	chr2	-	1387	5	NNC	ENSMUSG00000027305.10	novel	1478	5	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_4	127.660683062562	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493312	119485926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493191
transcript_32623.nic	chr2	-	1335	5	NIC	ENSMUSG00000027305.10	novel	1478	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	8	junction_4	132.411055052061	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493308	119485926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493239
transcript_32624.known	chr2	-	1308	5	FSM	ENSMUSG00000027305.10	ENSMUST00000110802.8	1308	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_4	88.8453712919249	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493302	119485926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_119486274_119486848_119486924_119488754_119488941_119490482_119491141_119493260
transcript_32626.nnic	chr2	-	1306	4	NIC	ENSMUSG00000027305.10	novel	1478	5	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	127.452823516085	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493315	119485926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_119486274_119486848_119486924_119490482_119491141_119493089
transcript_32627.nnic	chr2	-	1161	4	NIC	ENSMUSG00000027305.10	novel	1308	5	NA	NA	-33	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_2	130.10337769977	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCAGCCTTTTTCTGCTG	NA	False	NA	-1	True	AATAAA	-21	NA	119493341	119485926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_119486274_119486848_119486924_119490482_119491141_119493260
transcript_32628.known	chr2	+	4664	18	FSM	ENSMUSG00000027304.10	ENSMUST00000028767.9	4664	18	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_14	16.8134482341515	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGGTCCAAAGCTTGCA	NA	False	NA	NA	False	AATAAA	-25	NA	119505548	119565888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_119505762_119522596_119522708_119531598_119531747_119535919_119536125_119541445_119541561_119542489_119542602_119550646_119550783_119551555_119551734_119555305_119555389_119557197_119557286_119557373_119557482_119558018_119558097_119558875_119558998_119559159_119559218_119560374_119560453_119561135_119561232_119562884_119562997_119563265
transcript_3263.nic	chr1	+	2084	9	ISM	ENSMUSG00000026519.17	ENSMUST00000161523.8	3258	23	21229	0	5197	0	3prime_fragment	FALSE	canonical	3	35	junction_5	8.24621125123532	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTGCCTCTCATGCTT	NA	False	NA	6	True	AATAAA	-22	NA	180792828	180802668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_180793212_180793308_180793396_180794032_180794096_180796309_180796473_180797744_180797851_180799531_180799700_180800280_180800397_180800704_180800768_180801733
transcript_32633.known	chr2	-	4744	25	FSM	ENSMUSG00000034032.16	ENSMUST00000048493.12	4744	25	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_24	70.0848691865005	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGGACTGTTTTGTCACA	464	False	NA	-2	True	AATAAA	-20	NA	119618018	119594440	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_119594926_119595024_119595085_119595219_119595397_119597972_119598730_119599730_119599874_119600060_119600214_119600367_119600564_119600800_119600911_119601370_119601573_119601676_119601836_119602219_119602378_119602968_119603140_119603618_119603754_119603870_119604054_119604271_119604440_119604598_119604701_119605433_119605533_119605776_119605893_119607146_119607375_119608597_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617895
transcript_32636.known	chr2	-	1385	6	FSM	ENSMUSG00000034032.16	ENSMUST00000156506.8	1385	6	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_5	119.666870937616	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAAAAAATCCTCAAA	487	False	NA	NA	False	NA	NA	NA	119617995	119608131	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_119608820_119610536_119610658_119613126_119613217_119613563_119613713_119614214_119614452_119617895
transcript_32637.known	chr2	+	3989	19	FSM	ENSMUSG00000027298.18	ENSMUST00000028763.10	3989	19	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_12	19.4854329889133	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTTTTGTTTTTTACT	NA	False	NA	NA	False	AATAAA	-22	NA	119629994	119648585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_119630365_119632028_119632213_119632759_119632861_119633720_119633892_119635248_119635336_119636095_119636212_119638315_119638494_119639213_119639360_119639883_119640029_119640385_119640516_119640597_119640699_119640958_119641055_119641341_119641423_119642078_119642172_119642540_119642663_119643025_119643136_119643283_119643444_119643643_119643781_119647124
transcript_32639.nic	chr2	+	1454	8	ISM	ENSMUSG00000033852.17	ENSMUST00000162393.8	5092	27	-18	10439	-18	-2399	5prime_fragment	FALSE	canonical	3	18	junction_5	45.292248289327	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857955	119863075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119861982_119862133_119862321_119862482_119862594
transcript_32640.known	chr2	+	1373	8	FSM	ENSMUSG00000098789.8	ENSMUST00000044675.5	1373	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_5	32.3128836376389	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857963	119863075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862055_119862133_119862321_119862482_119862594
transcript_32641.nic	chr2	+	1359	8	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	55.0810163971848	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857965	119863075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_119858058_119860623_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119861982_119862133_119862321_119862482_119862594
transcript_32642.nic	chr2	+	1286	8	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	46.6533022651655	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857965	119863075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_119858058_119860623_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862055_119862133_119862321_119862482_119862594
transcript_32645.nnic	chr2	+	1304	7	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_5	49.2084568161025	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857955	119863075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119861787_119861884_119862321_119862482_119862594
transcript_32646.nnic	chr2	+	1285	7	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_4	49.0736408087093	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857955	119863075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119862055_119862133_119862321_119862482_119862594
transcript_32652.nnic	chr2	+	1208	6	NIC	ENSMUSG00000098789.8	novel	1373	8	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	2	5	junction_4	57.5902769571392	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACACTTGTTCTCATGTTCC	NA	False	NA	6	True	NA	NA	NA	119857955	119863075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_119858058_119860538_119860693_119860769_119861024_119861296_119861354_119862321_119862482_119862594
transcript_32659.known	chr2	-	3730	6	FSM	ENSMUSG00000027293.14	ENSMUST00000028755.8	3730	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_2	18.4217263034711	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGCACAGTTCCTAGAC	NA	False	NA	NA	False	AATAAA	-20	NA	119985087	119919655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_119922166_119927443_119927609_119932500_119932914_119958072_119958171_119967379_119967557_119984720
transcript_32661.nic	chr2	-	1611	5	ISM	ENSMUSG00000046971.8	ENSMUST00000142183.2	2610	15	8933	9	8933	0	3prime_fragment	FALSE	canonical	2	10	junction_2	2.54950975679639	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTCACTGAGCCTGT	3681	False	NA	NA	False	AATAAA	-22	NA	120133925	120130446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_120131110_120131377_120131565_120132677_120132845_120133207_120133424_120133547
transcript_32664.nic	chr2	-	1012	2	ISM	ENSMUSG00000046971.8	ENSMUST00000142183.2	2610	15	11132	9	11132	0	3prime_fragment	FALSE	canonical	2	16	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTGTCACTGAGCCTGT	5880	False	NA	NA	False	AATAAA	-22	NA	120131726	120130446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_120131110_120131377
transcript_32667.known	chr2	-	2874	20	FSM	ENSMUSG00000033808.17	ENSMUST00000090042.12	2874	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	102.185508348021	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	TATAAA	-14	NA	120234550	120185792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204391_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
transcript_32668.known	chr2	-	2897	20	FSM	ENSMUSG00000033808.17	ENSMUST00000090046.12	2897	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	114.209531889923	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTCTCTCTCATTTAT	NA	False	NA	NA	False	TATAAA	-14	NA	120234570	120185792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204968_120205041_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120233190_120233252_120234385
transcript_3267.known	chr1	-	1741	9	FSM	ENSMUSG00000038776.14	ENSMUST00000036928.12	1741	9	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	19.7214984217731	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGGGCCAGATACCTT	5728	False	NA	-3	True	GATAAA	-18	NA	180845134	180817118	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_180817546_180817957_180818084_180819497_180819607_180821443_180821653_180822192_180822323_180823513_180823742_180827287_180827469_180829363_180829552_180844991
transcript_32670.known	chr2	-	2160	19	FSM	ENSMUSG00000033808.17	ENSMUST00000124806.8	2160	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	137.050871423806	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGGAATGGGGTGGGCAGA	NA	False	NA	NA	False	NA	NA	NA	120234558	120186453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_120187020_120190014_120190046_120190519_120190576_120193359_120193422_120193842_120193917_120199724_120199829_120200923_120200983_120202004_120202114_120204391_120204461_120205899_120205994_120208373_120208474_120210071_120210256_120211247_120211310_120216254_120216373_120222661_120222707_120222795_120222850_120224842_120224957_120227842_120227929_120234385
transcript_32672.known	chr2	+	3099	5	FSM	ENSMUSG00000062646.13	ENSMUST00000154574.8	3099	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	3.77491721763537	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCACTGAGTGAAACAATG	NA	False	NA	NA	False	ATTAAA	-13	NA	120234376	120254140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_120235541_120236746_120236810_120241915_120242025_120249838_120249967_120252505
transcript_32674.known	chr2	+	2622	21	FSM	ENSMUSG00000079110.13	ENSMUST00000028748.14	2622	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	2.41039415863879	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCTTATTAGCATTTCTCA	NA	False	NA	NA	False	AATAAA	-28	NA	120307389	120335399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_120307712_120311163_120311234_120312590_120312710_120314971_120315106_120315661_120315831_120318554_120318639_120320148_120320235_120321434_120321513_120322274_120322436_120325252_120325423_120325716_120325729_120326345_120326555_120327458_120327496_120332583_120332662_120332867_120332926_120333009_120333075_120333456_120333526_120333613_120333693_120333829_120333947_120334576_120334636_120334953
transcript_32678.known	chr2	-	9085	22	FSM	ENSMUSG00000027288.17	ENSMUST00000055241.13	9085	22	0	0	0	0	multi-exon	FALSE	canonical	3	679	junction_17	176.960671803312	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTATTTGTCTGCATA	9821	False	NA	-6	True	AATAAA	-21	NA	120394288	120337300	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_120340624_120340967_120341115_120343183_120343256_120344097_120344170_120344623_120344744_120345922_120345986_120346394_120346587_120349545_120349663_120350891_120351027_120353165_120353312_120354001_120354055_120354345_120355106_120357229_120357566_120358817_120358879_120358955_120359111_120360928_120360999_120362075_120362704_120363991_120366161_120369775_120369974_120376323_120376386_120385711_120385797_120394167
transcript_32680.known	chr2	+	2658	8	FSM	ENSMUSG00000027287.15	ENSMUST00000028743.10	2658	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	118.449334729914	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGACCAGTAATGCCC	NA	False	NA	10	True	NA	NA	NA	120398171	120431736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_120398243_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
transcript_32683.known	chr2	+	2723	8	FSM	ENSMUSG00000027287.15	ENSMUST00000110711.9	2723	8	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_4	7.72221814385119	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACAGACCAGTAATGCCC	NA	False	NA	10	True	NA	NA	NA	120398151	120431736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_120398288_120414749_120414847_120415631_120415674_120416036_120416086_120416639_120416758_120425281_120425438_120427123_120427269_120429756
transcript_32684.nnic	chr2	+	1376	7	NNC	ENSMUSG00000027285.14	novel	3154	6	NA	NA	-6	-96	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	104.533354591835	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTAACTATATGCATGATA	NA	False	NA	NA	False	ATTAAA	-24	NA	120439857	120450291	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455_120449922_120449955
transcript_32687.known	chr2	+	3154	6	FSM	ENSMUSG00000027285.14	ENSMUST00000124187.8	3154	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	54.4147038951789	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGCTCCAATATGAATCC	NA	False	NA	NA	False	AATAAA	-16	NA	120439863	120452041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_120440027_120442818_120442912_120443531_120443602_120446335_120446469_120448353_120448463_120449455
transcript_3269.known	chr1	-	9392	23	FSM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	0	0	0	0	multi-exon	TRUE	canonical	3	480	junction_18	71.7805568876937	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTGATCTGGAACTTT	NA	False	NA	NA	False	AATAAA	-22	NA	180971769	180914702	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_180921475_180922548_180922620_180924700_180924790_180926691_180926769_180929093_180929201_180932636_180932737_180934424_180934545_180936724_180936788_180939852_180939958_180941647_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
transcript_32693.known	chr2	-	1962	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102497.10	1962	6	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_5	44.5394207416307	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	120439836	120434718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439595
transcript_32695.nic	chr2	-	1820	6	NIC	ENSMUSG00000027286.17	novel	1961	6	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	69.0582362937253	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	120439853	120434718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439754
transcript_32696.known	chr2	-	1961	6	FSM	ENSMUSG00000027286.17	ENSMUST00000102499.8	1961	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	57.8321709777525	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTGGAAGTAATGTT	NA	False	NA	NA	False	AATAAA	-15	NA	120440001	120434718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_120435740_120436428_120436615_120438279_120438549_120439153_120439293_120439398_120439505_120439761
transcript_32698.known	chr2	+	1430	5	FSM	ENSMUSG00000027285.14	ENSMUST00000028741.14	1430	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	111.162887242101	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTGAATTGAATGTTCC	NA	False	NA	NA	False	TTTAAA	-4	NA	120439863	120450387	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_120440027_120442818_120442912_120446335_120446469_120448353_120448463_120449455
transcript_32708.known	chr2	-	5996	28	FSM	ENSMUSG00000027284.17	ENSMUST00000110700.2	5996	28	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_27	22.3478547470889	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAACTTTGCTTGAATAT	6114	False	NA	NA	False	NA	NA	NA	120561999	120547002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_120549409_120549621_120549730_120550904_120551087_120551214_120551279_120551362_120551471_120553090_120553240_120553419_120553499_120553672_120553737_120554228_120554388_120554613_120554718_120554813_120554948_120555152_120555208_120555372_120555463_120555656_120555745_120556075_120556243_120556401_120556549_120556657_120556779_120557070_120557277_120557777_120557854_120558338_120558429_120558814_120558925_120559091_120559213_120560011_120560091_120560169_120560284_120560410_120560581_120560779_120560984_120561182_120561669_120561884
transcript_32709.known	chr2	+	2417	13	FSM	ENSMUSG00000054484.15	ENSMUST00000110686.3	2417	13	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	3.91843931516958	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTTGGAGAGATCAGTGG	NA	False	NA	NA	False	AATAAA	-25	NA	120808013	120838125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_120808292_120809611_120809750_120810953_120811000_120814814_120814957_120817063_120817189_120817316_120817440_120820811_120820968_120823958_120824119_120826886_120827001_120829554_120829640_120832977_120833083_120835162_120835282_120837299
transcript_32711.known	chr2	+	1569	11	FSM	ENSMUSG00000023572.17	ENSMUST00000060455.15	1569	11	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_6	15.0811140172071	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTGTCCTCTGAAGT	NA	False	NA	21	True	AATAAA	-30	NA	120838883	120847385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_120839091_120839198_120839259_120839523_120839604_120840307_120840390_120841914_120842012_120842163_120842238_120842833_120842911_120843179_120843458_120844438_120844500_120846611_120846659_120846879
transcript_32715.known	chr2	+	1632	10	FSM	ENSMUSG00000023572.17	ENSMUST00000099489.9	1632	10	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	15.8464857653396	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATGTGTCCTCTGAAGT	NA	False	NA	21	True	AATAAA	-30	NA	120838928	120847385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_120839259_120839523_120839604_120840307_120840390_120841914_120842012_120842163_120842238_120842833_120842911_120843179_120843458_120844438_120844500_120846611_120846659_120846879
transcript_32718.known	chr2	+	2477	11	FSM	ENSMUSG00000027259.16	ENSMUST00000119031.8	2477	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	26.5369553641709	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCTTGAATTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	120970978	120987159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_120971091_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
transcript_32722.nic	chr2	+	2600	11	NIC	ENSMUSG00000027259.16	novel	2477	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	76	junction_1	16.3572613844739	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGCTTGAATTGCTCTT	NA	False	NA	NA	False	NA	NA	NA	120970912	120987159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_120971148_120972573_120972785_120973004_120973136_120973629_120973691_120976513_120976602_120978721_120978804_120980700_120980828_120981611_120981693_120982910_120983050_120985199_120985301_120985815
transcript_32726.known	chr2	+	2915	19	FSM	ENSMUSG00000027263.13	ENSMUST00000138601.8	2915	19	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_18	57.833947056195	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTGGCCTTGTAGAACT	NA	False	NA	2	True	AATAAA	-14	NA	121001689	121029250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020307_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215_121027352_121028644
transcript_32727.known	chr2	+	4206	18	FSM	ENSMUSG00000027263.13	ENSMUST00000039541.12	4206	18	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_12	42.7635326321784	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCTGGCCTTGTAGAACTA	NA	False	NA	3	True	AATAAA	-15	NA	121001695	121029251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020304_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215
transcript_32731.known	chr2	+	4250	18	FSM	ENSMUSG00000027263.13	ENSMUST00000110658.8	4250	18	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_12	41.5047418810901	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCTGGCCTTGTAGAACTA	NA	False	NA	3	True	AATAAA	-15	NA	121001648	121029251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_121001953_121004038_121004168_121005820_121005944_121006251_121006306_121007008_121007066_121009150_121009231_121013969_121014172_121014814_121014981_121015182_121015308_121018612_121018664_121019005_121019112_121019842_121019951_121020307_121020447_121022713_121022892_121024422_121024558_121025890_121026008_121026583_121026724_121027215
transcript_32740.nic	chr2	-	2651	3	ISM	ENSMUSG00000050619.15	ENSMUST00000163766.8	3611	6	-48	4941	-48	-496	5prime_fragment	FALSE	canonical	3	33	junction_1	2	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTCATTATCTTTGTT	NA	False	NA	NA	False	AATAAA	-22	NA	121001654	120996117	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_120997200_120999679_120999885_121000290
transcript_32741.known	chr2	-	2894	2	FSM	ENSMUSG00000050619.15	ENSMUST00000146243.2	2894	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATTAAAAACAAAATAACA	NA	False	NA	NA	False	TTTAAA	-41	NA	121001606	120995621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_120997200_121000290
transcript_32742.known	chr2	-	1442	10	FSM	ENSMUSG00000033526.17	ENSMUST00000131661.8	1442	10	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_9	33.734255586866	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGATTCAAAAGTCAAA	NA	False	NA	NA	False	TTTAAA	-7	NA	121185556	121177528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185516
transcript_32743.nic	chr2	-	1458	10	ISM	ENSMUSG00000033526.17	ENSMUST00000150081.8	2485	18	-45	6690	-23	0	5prime_fragment	FALSE	canonical	3	56	junction_9	18.8017598335769	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATGATTCAAAAGTCAAA	NA	False	NA	NA	False	TTTAAA	-7	NA	121185837	121177528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_121177867_121177961_121178124_121178947_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185781
transcript_32744.nic	chr2	-	1233	8	ISM	ENSMUSG00000033526.17	ENSMUST00000150081.8	2485	18	-45	7834	-23	0	5prime_fragment	FALSE	canonical	3	56	junction_7	19.2629495272608	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATATCAGTCTCTGTAT	NA	False	NA	NA	False	AATACA	-35	NA	121185837	121178672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_121179050_121179174_121179330_121179654_121179741_121179955_121180047_121180427_121180624_121180957_121181133_121181397_121181495_121185781
transcript_32746.known	chr2	+	1518	10	FSM	ENSMUSG00000000308.15	ENSMUST00000078222.9	1518	10	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_1	32.5602954456217	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTGTGTTATTTCTAT	801	False	NA	32	True	AGTAAA	-20	NA	121188256	121194218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_121188341_121189276_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
transcript_32747.nic	chr2	+	1608	10	NIC	ENSMUSG00000000308.15	novel	1518	10	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	65.8743660217344	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTGTGTTATTTCTAT	800	False	NA	32	True	AGTAAA	-20	NA	121188255	121194218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_121188430_121189276_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
transcript_32751.known	chr2	+	1620	9	FSM	ENSMUSG00000000308.15	ENSMUST00000000317.13	1620	9	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_3	17.8881070826401	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTCTGTGTTATTTCTAT	1635	False	NA	32	True	AGTAAA	-20	NA	121189090	121194218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_121189483_121190059_121190259_121190425_121190522_121191036_121191259_121191383_121191470_121191586_121191711_121193155_121193291_121193455_121193582_121193978
transcript_32756.known	chr2	+	2770	13	FSM	ENSMUSG00000027248.14	ENSMUST00000028683.14	2770	13	0	0	0	0	multi-exon	FALSE	canonical	3	3731	junction_4	277.160252481404	1122	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGAATCTTGTCCATAATT	NA	False	NA	NA	False	ATTAAA	-26	NA	121244255	121269168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_121244687_121252929_121253009_121255005_121255124_121257075_121257184_121259934_121260065_121262132_121262250_121262754_121262881_121263997_121264181_121264465_121264575_121265269_121265399_121266401_121266482_121266837_121266896_121268066
transcript_32758.known	chr2	-	2247	13	FSM	ENSMUSG00000033486.15	ENSMUST00000038073.5	2247	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	6.05988632089928	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCTGGTAAGTTCAAGT	NA	False	NA	NA	False	AATAAA	-14	NA	121244273	121224835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_121224969_121227433_121227602_121227941_121228370_121229926_121229951_121230217_121230318_121230524_121230704_121236809_121236935_121237187_121237344_121237823_121237997_121240618_121240688_121240857_121241032_121242630_121242772_121243896
transcript_32777.known	chr2	-	1674	11	FSM	ENSMUSG00000027246.13	ENSMUST00000116432.2	1674	11	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_5	7.95235814082842	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTGTGCGATCATTAGC	NA	False	NA	-17	True	ATTAAA	-15	NA	121273082	121269507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_121270031_121270107_121270153_121270328_121270501_121270596_121270640_121270714_121270908_121271576_121271653_121271742_121271823_121271907_121272095_121272191_121272305_121272626_121272663_121272876
transcript_3278.nic	chr1	-	2015	14	ISM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	-17	26835	-17	-17991	5prime_fragment	FALSE	canonical	3	480	junction_9	88.1404876440457	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTGTATGAGTGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	180971786	180941537	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_180941867_180945000_180945251_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
transcript_32784.known	chr2	+	961	4	FSM	ENSMUSG00000027245.12	ENSMUST00000126764.2	961	4	0	0	0	0	multi-exon	FALSE	canonical	3	4276	junction_2	190.202231556017	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTTCCCCTTGGATCTG	NA	False	NA	NA	False	NA	NA	NA	121287443	121289153	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_121287773_121288126_121288183_121288472_121288525_121288629
transcript_32786.known	chr2	+	876	3	FSM	ENSMUSG00000074884.13	ENSMUST00000110615.8	876	3	0	0	0	0	multi-exon	FALSE	canonical	1	56	junction_2	2937.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCCCCCACACCGACCTT	NA	False	NA	NA	False	NA	NA	NA	121279858	121281771	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_121279923_121280455_121280565_121281068
transcript_32787.known	chr2	+	525	3	FSM	ENSMUSG00000074884.13	ENSMUST00000099475.12	525	3	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	2874	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGAGCGCCTGGTTTG	NA	False	NA	-3	True	ATTAAA	-14	NA	121279863	121281535	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_121279923_121280455_121280565_121281178
transcript_32788.known	chr2	+	3056	3	FSM	ENSMUSG00000074884.13	ENSMUST00000139253.8	3056	3	0	0	0	0	multi-exon	FALSE	canonical	3	5931	junction_1	722	2576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTTCAGTGAGTCCTGG	NA	False	NA	NA	False	AATAAA	-14	NA	121279675	121283901	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_121279923_121280455_121280565_121281201
transcript_3279.nnic	chr1	-	1762	13	NIC	ENSMUSG00000026516.9	novel	9392	23	NA	NA	-17	-17994	combination_of_known_splicesites	FALSE	canonical	2	24	junction_1	191.245533716912	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTTATGTGTATGAGTG	NA	False	NA	NA	False	ATTAAA	-15	NA	180971786	180941540	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_180941867_180947919_180948065_180951431_180951550_180954502_180954605_180957073_180957209_180957958_180958036_180958302_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
transcript_32791.known	chr2	+	724	3	FSM	ENSMUSG00000027245.12	ENSMUST00000131870.2	724	3	0	0	0	0	multi-exon	FALSE	canonical	3	4570	junction_2	83	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTTTTTTTTCTTCAG	NA	False	NA	20	True	AATAAA	-15	NA	121287604	121288787	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_121287773_121288126_121288525_121288629
transcript_32793.known	chr2	+	3105	2	FSM	ENSMUSG00000074884.13	ENSMUST00000134412.2	3105	2	0	0	0	0	multi-exon	FALSE	canonical	3	5931	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATCTGAGCATTCTGGGT	NA	False	NA	3	True	NA	NA	NA	121279848	121283486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_121279923_121280455
transcript_32794.known	chr2	-	3362	7	FSM	ENSMUSG00000048222.4	ENSMUST00000056732.4	3362	7	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_3	20.2457128520803	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCAGTTCCTACTAATCTT	9195	False	NA	NA	False	NA	NA	NA	121304548	121290715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_121292786_121292867_121292958_121295259_121295420_121297216_121297378_121297468_121297578_121300259_121300798_121304314
transcript_32798.known	chr2	-	4198	7	FSM	ENSMUSG00000068479.6	ENSMUST00000089926.6	4198	7	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_6	26.8747093007534	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGGCACATGCCCATA	NA	False	NA	NA	False	AATAAA	-19	NA	121337146	121322391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_121325329_121325410_121325501_121327809_121327970_121329766_121329928_121330018_121330128_121332812_121333351_121336943
transcript_32805.nnic	chr2	+	1867	10	NNC	ENSMUSG00000027242.15	novel	2315	11	NA	NA	-17	3	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	16.7648957167965	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATAAAGCTCTTTAAGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	121337186	121363273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932_121356063_121357282_121357385_121357482_121357527_121359291_121359446_121361766_121361923_121362686
transcript_32808.nic	chr2	+	809	5	ISM	ENSMUSG00000027242.15	ENSMUST00000132373.2	3155	9	-49	7799	-17	-7223	5prime_fragment	FALSE	canonical	3	42	junction_4	6.13901457890434	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGAAAATGTAAG	NA	False	NA	NA	False	NA	NA	NA	121337186	121356047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_121337345_121341019_121341407_121348185_121348279_121349898_121349955_121355932
transcript_32810.nic	chr2	+	754	5	ISM	ENSMUSG00000027242.15	ENSMUST00000110603.2	2341	13	-15	17443	-15	-7223	5prime_fragment	FALSE	canonical	3	27	junction_1	11.2998893799895	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGAAAATGTAAG	NA	False	NA	NA	False	NA	NA	NA	121340313	121356047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_121340417_121341019_121341407_121348185_121348279_121349898_121349955_121355932
transcript_32817.known	chr2	+	3386	13	FSM	ENSMUSG00000033411.17	ENSMUST00000110578.8	3386	13	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	105.582774268449	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATAATCATGGCAG	NA	False	NA	NA	False	NA	NA	NA	121786891	121842869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_121787099_121799550_121799761_121807811_121807951_121809375_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043
transcript_3282.nic	chr1	-	789	7	ISM	ENSMUSG00000026516.9	ENSMUST00000027797.9	9392	23	-17	43670	-17	5346	5prime_fragment	FALSE	canonical	3	480	junction_2	118.928082843746	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGAAACAAAAGAAAAACAGA	NA	False	NA	NA	False	AAGAAA	-25	NA	180971786	180958372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_180958436_180962356_180962630_180964437_180964496_180966635_180966733_180966818_180966872_180969890_180969965_180971615
transcript_32822.nic	chr2	+	1922	8	ISM	ENSMUSG00000033411.17	ENSMUST00000128883.8	1236	9	-36	-413	-10	0	intron_retention	FALSE	canonical	3	361	junction_3	40.3110356085866	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	121786930	121824677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826
transcript_32823.nic	chr2	+	1285	7	ISM	ENSMUSG00000033411.17	ENSMUST00000128883.8	1236	9	-36	4668	-10	-1279	5prime_fragment	FALSE	canonical	3	361	junction_3	40.3429740544194	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGAGACCCTGTGATTT	NA	False	NA	NA	False	AATAAA	-17	NA	121786930	121819596	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270
transcript_32824.known	chr2	+	5053	13	FSM	ENSMUSG00000033411.17	ENSMUST00000036647.13	5053	13	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_9	41.0940655353327	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGGGTTTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	121786481	121844123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_121787099_121799550_121799761_121807811_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043
transcript_32825.known	chr2	+	3543	13	FSM	ENSMUSG00000033411.17	ENSMUST00000140570.8	3543	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	109.645134664314	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGCTCTTTCTCAAAAT	NA	False	NA	11	True	AATAAA	-21	NA	121786960	121843096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_121787099_121799550_121799761_121807815_121807951_121809372_121809523_121811632_121811846_121817429_121817509_121819270_121819383_121823826_121823914_121834381_121834445_121834548_121834629_121837343_121837471_121838201_121838298_121841043
transcript_32827.known	chr2	+	5413	8	FSM	ENSMUSG00000027236.9	ENSMUST00000028668.8	5413	8	0	0	0	0	multi-exon	FALSE	canonical	3	888	junction_1	160.980921673524	402	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTGCTGTCTTTCTCTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	121859026	121887079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_121859206_121859288_121859393_121871636_121871692_121872062_121872155_121877916_121878032_121880967_121881130_121882222_121882297_121882447
transcript_32830.nic	chr2	+	346	4	ISM	ENSMUSG00000027236.9	ENSMUST00000028668.8	5413	8	24	14985	24	12285	5prime_fragment	FALSE	canonical	3	888	junction_1	218.702740926786	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAGATAAAAGAGAAAGA	NA	False	NA	NA	False	AGTAAA	-26	NA	121859050	121872094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_121859206_121859288_121859393_121871636_121871692_121872062
transcript_32836.known	chr2	+	860	4	FSM	ENSMUSG00000060802.9	ENSMUST00000102476.5	860	4	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_2	12.4721912892465	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAATTG	NA	False	NA	NA	False	NA	NA	NA	121978166	121983564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_121978286_121981353_121981633_121982127_121982157_121983131
transcript_32839.known	chr2	+	2115	7	FSM	ENSMUSG00000027229.6	ENSMUST00000028661.6	2115	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	42.3910367884533	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	1945	False	NA	NA	False	AATAAA	-15	NA	122016752	122036878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_122016834_122016944_122017027_122018390_122018531_122021087_122021150_122023712_122023787_122028866_122028956_122035291
transcript_32846.nic	chr2	+	2000	6	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_2	38.5725290848293	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	1920	False	NA	NA	False	AATAAA	-15	NA	122016727	122036878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_122016834_122016944_122017027_122021087_122021150_122023712_122023787_122028866_122028956_122035291
transcript_32853.nnic	chr2	+	812	5	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	-25	310	combination_of_known_splicesites	FALSE	canonical	3	63	junction_2	27.6450718935582	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAACTGTAAATGTTTAT	1920	False	NA	NA	False	AATAAA	-14	NA	122016727	122035752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_122016834_122016944_122017027_122023712_122023787_122028866_122028956_122035291
transcript_32854.nnic	chr2	+	1705	5	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	-25	-233	combination_of_known_splicesites	FALSE	canonical	3	63	junction_2	27.6450718935582	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCTTTTCCTGAAACATT	1920	False	NA	NA	False	AATAAA	-14	NA	122016727	122036645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_122016834_122016944_122017027_122023712_122023787_122028866_122028956_122035291
transcript_32856.nnic	chr2	+	1938	5	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	63	junction_2	27.6450718935582	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	1920	False	NA	NA	False	AATAAA	-15	NA	122016727	122036878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_122016834_122016944_122017027_122023712_122023787_122028866_122028956_122035291
transcript_32859.nnic	chr2	+	787	4	NIC	ENSMUSG00000027229.6	novel	448	5	NA	NA	-91	310	combination_of_known_splicesites	FALSE	canonical	3	63	junction_1	28.5228952870419	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGAACTGTAAATGTTTAT	2056	False	NA	NA	False	AATAAA	-14	NA	122016863	122035752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_122017027_122023712_122023787_122028866_122028956_122035291
transcript_32862.nnic	chr2	+	1913	4	NIC	ENSMUSG00000027229.6	novel	2115	7	NA	NA	-91	0	combination_of_known_splicesites	FALSE	canonical	3	63	junction_1	28.5228952870419	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAATGTTTCTCAAAGTGAT	2056	False	NA	NA	False	AATAAA	-15	NA	122016863	122036878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_122017027_122023712_122023787_122028866_122028956_122035291
transcript_32864.known	chr2	+	2352	9	FSM	ENSMUSG00000027227.8	ENSMUST00000110551.4	2352	9	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_3	10.5763592507063	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTATGTGGTTTGTGCCT	NA	False	NA	16	True	AATAAA	-19	NA	122065229	122095821	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_122065440_122076962_122076997_122079279_122079445_122083667_122083828_122087322_122087442_122089545_122089612_122090660_122090837_122093668_122093791_122094521
transcript_32874.known	chr2	-	2389	9	FSM	ENSMUSG00000027199.15	ENSMUST00000028624.9	2389	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	2.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTTGATTTCTGTCTCA	NA	False	NA	NA	False	AATAAA	-26	NA	122441784	122424947	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_122426091_122427852_122427970_122428617_122428682_122430859_122431025_122431172_122431311_122432985_122433177_122434062_122434259_122440149_122440369_122441628
transcript_32875.known	chr2	+	792	5	FSM	ENSMUSG00000033213.17	ENSMUST00000047498.15	792	5	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_4	21.9146070008111	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCAAATGCAGATTTCTAA	NA	False	NA	NA	False	TATAAA	-16	NA	122479769	122483111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_122479862_122479991_122480054_122480176_122480263_122481135_122481197_122482620
transcript_32876.nic	chr2	+	596	4	NIC	ENSMUSG00000033213.17	novel	792	5	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_2	57.249939349798	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGATTTGTGCAAGAGATA	NA	False	NA	23	True	AATAAA	-25	NA	122479773	122483005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_122479862_122479991_122480054_122481135_122481197_122482620
transcript_32877.known	chr2	+	751	4	FSM	ENSMUSG00000033213.17	ENSMUST00000110512.4	751	4	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_3	25.0377492776186	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGATTTGTGCAAGAGATA	NA	False	NA	23	True	AATAAA	-25	NA	122479834	122483005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_122480054_122480176_122480263_122481135_122481197_122482620
transcript_32879.known	chr2	+	2088	5	FSM	ENSMUSG00000005804.15	ENSMUST00000148460.8	2088	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	54.4443523241851	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAAGGCTGGCGATTCTTTT	8285	False	NA	4	True	AATAAA	-16	NA	122580438	122590019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_122580625_122584508_122584651_122586049_122586134_122587974_122588062_122588430
transcript_32881.known	chr2	-	2999	16	FSM	ENSMUSG00000027201.17	ENSMUST00000067780.10	2999	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	210.706705055999	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAGCTTACTTGTTGCTT	NA	False	NA	-9	True	NA	NA	NA	124965580	124929661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_124930958_124937627_124937680_124937831_124938041_124939482_124939555_124939896_124939996_124940369_124940439_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124955962_124955971_124957357_124957411_124958584_124958794_124965304
transcript_32882.known	chr2	-	2928	15	FSM	ENSMUSG00000027201.17	ENSMUST00000147105.8	2928	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	219.217253156846	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACAGCTTACTTGTTGCTT	NA	False	NA	-9	True	NA	NA	NA	124965581	124929661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_124930958_124937627_124937680_124937831_124938041_124939896_124939996_124940369_124940439_124942238_124942341_124950875_124950940_124951073_124951124_124951589_124951744_124952399_124952592_124955768_124955863_124955962_124955971_124957357_124957411_124958584_124958794_124965304
transcript_32883.known	chr2	+	1954	9	FSM	ENSMUSG00000035183.15	ENSMUST00000070353.4	1954	9	0	0	0	0	multi-exon	TRUE	canonical	2	7	junction_6	24.0624188310319	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	124910043	124930597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_124910222_124910691_124910872_124922540_124922625_124922713_124922818_124923146_124923248_124924950_124925235_124927576_124927784_124929339_124929442_124929883
transcript_32884.nnic	chr2	+	1604	8	NIC	ENSMUSG00000035183.15	novel	1954	9	NA	NA	-146	-289	combination_of_known_splicesites	FALSE	canonical	3	4	junction_6	24.7608974154074	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTCTAACACTTAATTACT	NA	False	NA	5	True	AATAAA	-18	NA	124909897	124930308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_124910222_124910691_124910872_124922540_124922625_124922713_124922818_124923146_124923248_124924950_124925235_124929339_124929442_124929883
transcript_32891.known	chr2	+	1950	6	FSM	ENSMUSG00000027203.16	ENSMUST00000051605.9	1950	6	0	0	0	0	multi-exon	TRUE	canonical	3	2160	junction_3	102.069780052668	1355	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAAGTATATGTTTTAAGG	NA	False	NA	117	True	ATTAAA	-18	NA	125089401	125100528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_125089817_125091085_125091178_125092892_125092938_125098768_125098844_125098989_125099061_125099276
transcript_32894.known	chr2	-	6797	18	FSM	ENSMUSG00000035093.17	ENSMUST00000053699.13	6797	18	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_6	11.6758408483317	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTGTTCTTTTTCTAT	304	False	NA	NA	False	AATAAA	-36	NA	125624790	125578905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_125582838_125585733_125585954_125587716_125587872_125589304_125589526_125592198_125592362_125593648_125593782_125594733_125594901_125599113_125599256_125599351_125599520_125600085_125600167_125602191_125602327_125609294_125609411_125609728_125609754_125610026_125610254_125613328_125613465_125615095_125615421_125617472_125617652_125624518
transcript_32896.known	chr2	+	1928	10	FSM	ENSMUSG00000027207.16	ENSMUST00000094604.9	1928	10	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_4	15.4040238449986	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGTTGCTCTTGAATG	NA	False	NA	8	True	ATTAAA	-15	NA	125708026	125825507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_125708306_125720197_125720287_125729783_125729908_125735272_125735364_125738564_125738712_125771480_125771580_125773172_125773326_125788703_125788915_125817179_125817382_125824974
transcript_32897.known	chr2	-	2073	13	FSM	ENSMUSG00000027206.14	ENSMUST00000028635.6	2073	13	0	0	0	0	multi-exon	FALSE	canonical	3	620	junction_9	116.017838666685	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTTGGTTCTTGATGTG	NA	False	NA	NA	False	AATAAA	-19	NA	125701059	125673521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125686729_125686856_125690126_125690205_125691659_125691774_125700855
transcript_32898.known	chr2	-	3392	13	FSM	ENSMUSG00000027206.14	ENSMUST00000110463.8	3392	13	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_9	189.484534695813	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCAGGTGTGTGCATGTGA	NA	False	NA	-4	True	AATAAA	-22	NA	125701059	125672223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684653_125686729_125686856_125690126_125690205_125691659_125691774_125700855
transcript_32909.nnic	chr2	-	1764	12	NNC	ENSMUSG00000027206.14	novel	2073	13	NA	NA	21	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_9	266.946461342233	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTTGGTTCTTGATGTG	NA	False	NA	NA	False	AATAAA	-19	NA	125700938	125673521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_125674258_125675643_125675703_125676673_125676757_125678061_125678160_125681068_125681122_125681225_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125690188_125690205_125691659_125691774_125700855
transcript_32914.nic	chr2	-	918	8	ISM	ENSMUSG00000027206.14	ENSMUST00000028635.6	2073	13	123	7707	-20	3413	5prime_fragment	FALSE	canonical	3	620	junction_4	119.244903198315	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTCTGTCTGCTCTTTTC	NA	False	NA	1	True	AATAAA	-17	NA	125700936	125681228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_125681405_125682243_125682419_125684352_125684431_125684541_125684632_125686729_125686856_125690126_125690205_125691659_125691774_125700855
transcript_32916.known	chr2	+	1342	5	FSM	ENSMUSG00000023330.13	ENSMUST00000170908.8	1342	5	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	15.4495145554804	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTCGCCCTTACCTTTCG	7279	False	NA	25	True	ATTAAA	-23	NA	125994060	126007196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_125994135_125996465_125996781_126000329_126000474_126001689_126001949_126006646
transcript_32917.nnic	chr2	+	1662	5	NNC	ENSMUSG00000023330.13	novel	1342	5	NA	NA	43	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	62.1867148191637	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTCGCCCTTACCTTTCG	7322	False	NA	25	True	ATTAAA	-23	NA	125994103	126007196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_125994498_125996465_125996781_126000329_126000474_126001689_126001949_126006646
transcript_3292.known	chr1	+	531	4	FSM	ENSMUSG00000062169.14	ENSMUST00000193907.6	531	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	993.032504782978	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCACAATTGAGGAGCCAGA	NA	False	NA	NA	False	NA	NA	NA	180972257	180993813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_180972467_180983423_180983537_180989639_180989781_180993745
transcript_32921.nnic	chr2	+	1178	4	NIC	ENSMUSG00000023330.13	novel	1342	5	NA	NA	20	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_2	74.5534856477028	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTCGCCCTTACCTTTCG	7299	False	NA	25	True	ATTAAA	-23	NA	125994080	126007196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_125994135_125996465_125996781_126001689_126001949_126006646
transcript_32922.known	chr2	+	2918	10	FSM	ENSMUSG00000027359.17	ENSMUST00000061491.14	2918	10	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_5	10.1592261783666	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACGAGGCTTCGCTGTCT	NA	False	NA	16	True	AATAAA	-16	NA	126394326	126430163	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_126395553_126403456_126403667_126406597_126406757_126409666_126409792_126416621_126416817_126419779_126419871_126420768_126420968_126422825_126422924_126428171_126428303_126429679
transcript_32923.known	chr2	-	2751	10	FSM	ENSMUSG00000027361.16	ENSMUST00000103227.8	2751	10	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_9	168.845754725693	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCTCCATGCAGACTCAT	NA	False	NA	-12	True	ATTAAA	-12	NA	126517464	126470834	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_126472303_126481148_126481265_126488482_126488666_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126504910_126505009_126517275
transcript_32924.nnic	chr2	-	2686	9	NNC	ENSMUSG00000027361.16	novel	4153	9	NA	NA	-8	1	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	130.957471627242	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCCATGCAGACTCATGTT	NA	False	NA	-9	True	ATTAAA	-15	NA	126517472	126470831	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_126472303_126481129_126481265_126488482_126488669_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
transcript_32925.known	chr2	-	2613	9	FSM	ENSMUSG00000027361.16	ENSMUST00000110424.9	2613	9	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	121.804595048791	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCCATGCAGACTCATGT	NA	False	NA	-10	True	ATTAAA	-14	NA	126517422	126470832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_126472303_126481148_126481265_126488482_126488666_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
transcript_32928.known	chr2	-	1338	8	FSM	ENSMUSG00000027361.16	ENSMUST00000103226.10	1338	8	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_7	27.2074419591255	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATTGAATGAGTGCAGA	NA	False	NA	-17	True	NA	NA	NA	126517406	126480940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_126481265_126488482_126488669_126491987_126492102_126492428_126492541_126494152_126494348_126495474_126495643_126500389_126500498_126517275
transcript_3293.known	chr1	+	3268	5	FSM	ENSMUSG00000062169.14	ENSMUST00000134115.8	3268	5	0	0	0	0	multi-exon	FALSE	canonical	3	1843	junction_1	136.918543302213	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGATTGTTCTATTGCTTG	NA	False	NA	NA	False	NA	NA	NA	180978495	180996559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_180978627_180981299_180981369_180983423_180983537_180989639_180989781_180993745
transcript_32934.known	chr2	+	4145	19	FSM	ENSMUSG00000027363.16	ENSMUST00000028841.14	4145	19	0	0	0	0	multi-exon	TRUE	canonical	3	323	junction_9	42.2163738639668	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTGAAACCTTGTACAT	3576	False	NA	6	True	ATTAAA	-20	NA	126549262	126601217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_126549408_126559914_126560085_126561944_126562090_126567264_126567351_126571079_126571243_126573980_126574024_126575879_126576025_126578268_126578432_126579330_126579476_126579778_126580003_126584043_126584602_126589415_126589497_126590105_126590369_126592899_126593113_126594191_126594403_126596768_126597006_126597892_126598036_126600039_126600173_126600340
transcript_32943.nic	chr2	+	411	2	ISM	ENSMUSG00000027363.16	ENSMUST00000138859.2	3463	17	10	40993	-5	-40993	5prime_fragment	FALSE	canonical	3	389	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATGTGATCACAAGAGTAA	3571	False	NA	NA	False	AATAAA	-28	NA	126549257	126560175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_126549408_126559914
transcript_32944.nic	chr2	-	2061	16	ISM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	-14	37703	-14	0	5prime_fragment	FALSE	canonical	3	201	junction_10	20.8373596109381	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAGAAAAGAACCAAAG	NA	False	NA	NA	False	NA	NA	NA	126718164	126671187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_126671211_126672048_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
transcript_32945.nic	chr2	-	1983	15	ISM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	-14	38619	-14	657	5prime_fragment	FALSE	canonical	3	201	junction_9	21.566697683688	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GGAAAAAATGAGACACAATC	NA	False	NA	NA	False	GATAAA	-3	NA	126718164	126672103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
transcript_32946.known	chr2	-	7107	39	FSM	ENSMUSG00000027365.15	ENSMUST00000103224.10	7107	39	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_33	52.8048791605273	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTAATGAGTTTACTC	NA	False	NA	-16	True	ATTAAA	-35	NA	126718150	126633484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_126634877_126637151_126637259_126637362_126637415_126639030_126639237_126639386_126639470_126639581_126639866_126641088_126641155_126641232_126641284_126643042_126643069_126644505_126644541_126646936_126647008_126649208_126649300_126652082_126652151_126654615_126655329_126656607_126656741_126658679_126658865_126661756_126661884_126663083_126663259_126664389_126664669_126665895_126666025_126667331_126667476_126667553_126667710_126668634_126668864_126670929_126671211_126672048_126672184_126673116_126673258_126675607_126675662_126677375_126677511_126679254_126679356_126682663_126682737_126684775_126684900_126686219_126686395_126687993_126688166_126690416_126690542_126691818_126692033_126693262_126693462_126696562_126696602_126700332_126700413_126717893
transcript_32951.known	chr2	-	5616	15	FSM	ENSMUSG00000027366.13	ENSMUST00000028844.11	5616	15	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	6.77630927178938	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTATTCTTTTGTA	8279	False	NA	NA	False	AATAAA	-21	NA	126775155	126732310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_126736207_126746829_126746991_126750025_126750101_126754562_126754666_126755451_126755509_126759130_126759206_126759719_126759802_126761558_126761661_126762237_126762335_126765375_126765528_126767665_126767800_126768207_126768298_126768736_126768920_126769668_126769789_126774866
transcript_32954.known	chr2	+	1160	8	FSM	ENSMUSG00000001999.16	ENSMUST00000002064.15	1160	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	50.5988626152721	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAGAATAGTGTTGATGACT	2211	False	NA	NA	False	AATAAA	-20	NA	126912586	126939004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126933958_126934067_126937005_126937178_126938654
transcript_32959.nnic	chr2	+	980	6	NNC	ENSMUSG00000001999.16	novel	657	6	NA	NA	-22	424	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	78.0307631642803	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGAGTCGATTTTGAT	2187	False	NA	NA	False	NA	NA	NA	126912562	126932693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928771_126932175
transcript_3296.known	chr1	-	333	1	FSM	ENSMUSG00000081214.4	ENSMUST00000117444.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	722	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	181069885	181069552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_181069600_181069900
transcript_32960.nic	chr2	+	1084	6	NIC	ENSMUSG00000001999.16	novel	772	7	NA	NA	-22	424	combination_of_known_junctions	FALSE	canonical	3	37	junction_5	66.545022353291	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGTGAGTCGATTTTGAT	2187	False	NA	NA	False	NA	NA	NA	126912562	126932693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764_126928863_126932163
transcript_32962.known	chr2	+	1460	5	FSM	ENSMUSG00000001999.16	ENSMUST00000142861.2	1460	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	50.701947694344	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TGAAAAAAAAAAAAAAGAGG	2209	False	NA	NA	False	AAAAAG	-43	NA	126912584	126929790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_126912651_126922449_126922579_126924851_126924971_126927882_126928003_126928764
transcript_32969.known	chr2	-	2695	18	FSM	ENSMUSG00000034906.16	ENSMUST00000110387.4	2695	18	0	0	0	0	multi-exon	TRUE	canonical	3	394	junction_9	30.9044738701424	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTCAGTATTAGCGTCACA	NA	False	NA	13	True	AATAAA	-34	NA	126975874	126945728	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_126946201_126947765_126947842_126948023_126948116_126949273_126949391_126950404_126950579_126955479_126955591_126958451_126958575_126959425_126959533_126959996_126960146_126963044_126963248_126963959_126964052_126965456_126965647_126966750_126966876_126967470_126967607_126968034_126968128_126969023_126969115_126969404_126969643_126975768
transcript_32971.known	chr2	-	1898	2	FSM	ENSMUSG00000074825.5	ENSMUST00000110386.2	1898	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGACTTAATTTCAGTCA	NA	False	NA	NA	False	NA	NA	NA	126985226	126982328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_126984135_126985134
transcript_32972.known	chr2	-	2364	2	FSM	ENSMUSG00000044145.3	ENSMUST00000150956.2	2364	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAACACAATGCTCAGCTT	NA	False	NA	NA	False	NA	NA	NA	127050174	127044486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_127046771_127050094
transcript_32974.known	chr2	+	6745	45	FSM	ENSMUSG00000003660.11	ENSMUST00000103220.4	6745	45	0	0	0	0	multi-exon	FALSE	canonical	3	516	junction_16	102.022451345341	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTCCTTAACAGTGATAC	NA	False	NA	15	True	AATAAA	-17	NA	127050318	127082371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_127050459_127050893_127051058_127052613_127052786_127053519_127053713_127054268_127054325_127056726_127056826_127057968_127058122_127058273_127058374_127058532_127058670_127059148_127059233_127059311_127059486_127059792_127059931_127060272_127060429_127060948_127061120_127063664_127063859_127064050_127064175_127066500_127066651_127067002_127067114_127067925_127068058_127068214_127068404_127068864_127069063_127069796_127069950_127070064_127070146_127070461_127070546_127070978_127071086_127071405_127071525_127071805_127071961_127072053_127072244_127072433_127072608_127073606_127073768_127074325_127074554_127074820_127075013_127075099_127075279_127075419_127075572_127076883_127076993_127077879_127077989_127078378_127078569_127078659_127078825_127079380_127079503_127079742_127079887_127079978_127080156_127080419_127080581_127080658_127080741_127081798_127081892_127081988
transcript_32975.known	chr2	-	3075	7	FSM	ENSMUSG00000003662.11	ENSMUST00000003759.11	3075	7	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_2	19.7793382655291	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGCTTTTAGTTTTCTGA	NA	False	NA	NA	False	NA	NA	NA	127089736	127082857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_127084958_127086832_127086921_127087642_127087845_127088332_127088422_127088521_127088634_127088929_127089079_127089401
transcript_32976.known	chr2	+	3116	8	FSM	ENSMUSG00000027367.17	ENSMUST00000110375.9	3116	8	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_5	27.592515992122	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAAGAGTGTTCATTTCT	NA	False	NA	9	True	AATAAA	-16	NA	127112148	127140852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_127112801_127126014_127126224_127126451_127126502_127132691_127132803_127132877_127132961_127134070_127134171_127137403_127137489_127139026
transcript_32979.known	chr2	+	2628	22	FSM	ENSMUSG00000046338.5	ENSMUST00000062211.4	2628	22	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	53.4925768898164	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	5001	False	NA	14	True	AATAAA	-25	NA	127267118	127278012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_127267142_127269160_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
transcript_3298.known	chr1	-	3510	14	FSM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	0	0	0	0	multi-exon	FALSE	canonical	3	1956	junction_6	154.844109428974	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGCTGTTAGAGCCTCA	NA	False	NA	-50	True	AATAAA	-33	NA	181669944	181642899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_181644584_181644829_181644953_181645053_181645135_181646404_181646574_181647428_181647555_181648238_181648343_181649000_181649193_181653186_181653242_181656276_181656474_181659106_181659300_181659713_181659798_181663622_181663854_181665942_181666122_181669852
transcript_32980.nnic	chr2	+	2657	22	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	-41	0	at_least_one_novel_splicesite	TRUE	canonical	3	44	junction_1	48.8950470250594	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	4960	False	NA	14	True	AATAAA	-25	NA	127267077	127278012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_127267142_127269172_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
transcript_32981.nnic	chr2	+	2605	22	NNC	ENSMUSG00000046338.5	novel	2628	22	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	54.5121842462079	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGAAGTACATGTCCAAT	4962	False	NA	14	True	AATAAA	-25	NA	127267079	127278012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_127267142_127269222_127269292_127269412_127269527_127270165_127270240_127270604_127270710_127270916_127271046_127272774_127272875_127273202_127273337_127273582_127273683_127273777_127273991_127274291_127274415_127274569_127274653_127274891_127275011_127275505_127275577_127275651_127275911_127275997_127276147_127276307_127276386_127276711_127276844_127276926_127277048_127277130_127277197_127277394_127277451_127277764
transcript_32990.known	chr2	-	1211	8	FSM	ENSMUSG00000027371.11	ENSMUST00000028848.4	1211	8	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_6	10.321366781822	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGCTTCCACTGTCTTT	NA	False	NA	-4	True	AATAAA	-19	NA	127286470	127278134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_127278327_127278465_127278554_127278656_127278766_127280032_127280193_127280429_127280490_127282305_127282523_127283793_127284045_127286336
transcript_32994.nnic	chr2	-	1088	7	NIC	ENSMUSG00000027371.11	novel	1211	8	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	8	junction_3	35.4044096437467	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTAGCTTCCACTGTCTTT	NA	False	NA	-4	True	AATAAA	-19	NA	127286507	127278134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_127278327_127278465_127278554_127278656_127278766_127280429_127280490_127282305_127282523_127283793_127284045_127286336
transcript_32998.known	chr2	-	2728	9	FSM	ENSMUSG00000079056.13	ENSMUST00000028850.15	2728	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	31.0161248385416	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGACTCTCTCCAGCTTC	NA	False	NA	1	True	AATAAA	-18	NA	127363290	127298417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_127300309_127301249_127301313_127301902_127302008_127302352_127302461_127306967_127307039_127307268_127307339_127307773_127307895_127352748_127352915_127363157
transcript_32999.known	chr2	-	1296	8	FSM	ENSMUSG00000079056.13	ENSMUST00000088538.6	1296	8	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	5.52175659716791	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATGGTTCCTCTGGCTTG	9628	False	NA	99	True	NA	NA	NA	127324419	127300049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_127300309_127301249_127301313_127301902_127302008_127302352_127302461_127306967_127307039_127307268_127307339_127307773_127307899_127323924
transcript_33.known	ERCC-00092	+	1108	1	FSM	ERCC-00092A	DQ459425	1108	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00092_+_0_1100
transcript_33000.known	chr2	-	2732	9	FSM	ENSMUSG00000079056.13	ENSMUST00000103215.11	2732	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	30.8015320235861	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGACTCTCTCCAGCTTC	NA	False	NA	1	True	AATAAA	-18	NA	127363290	127298417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_127300309_127301249_127301313_127301902_127302008_127302352_127302461_127306967_127307039_127307268_127307339_127307773_127307899_127352748_127352915_127363157
transcript_33001.known	chr2	-	2981	6	FSM	ENSMUSG00000034800.16	ENSMUST00000110368.9	2981	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	12.1983605455815	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGAAGTGTCTCTATTCA	NA	False	NA	-19	True	NA	NA	NA	127426589	127417452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_127419865_127420523_127420638_127422816_127422944_127423395_127423467_127423778_127423996_127426549
transcript_33002.known	chr2	-	2765	5	FSM	ENSMUSG00000034800.16	ENSMUST00000077422.12	2765	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	7.11951543294907	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGAATACTGAAGTGTCT	NA	False	NA	-26	True	NA	NA	NA	127426597	127417459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_127419865_127420523_127420638_127422816_127422944_127423395_127423467_127426549
transcript_33004.known	chr2	+	4481	12	FSM	ENSMUSG00000027374.13	ENSMUST00000028852.13	4481	12	0	0	0	0	multi-exon	FALSE	canonical	3	1110	junction_4	149.07045314213	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTCCAATAACTTGGC	3967	False	NA	7	True	AATAAA	-18	NA	127429141	127448749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
transcript_33006.nic	chr2	+	1535	12	NIC	ENSMUSG00000027374.13	novel	718	5	NA	NA	-122	129	combination_of_known_junctions	FALSE	canonical	3	81	junction_1	397.120336904912	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	7064	False	NA	25	True	AATAAA	-22	NA	127432238	127445904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_127432402_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
transcript_33008.nnic	chr2	+	1450	12	NNC	ENSMUSG00000027374.13	novel	718	5	NA	NA	-117	129	at_least_one_novel_splicesite	FALSE	canonical	3	73	junction_1	399.254304923566	48	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCACATGGTATATAGCTG	7069	False	NA	25	True	AATAAA	-22	NA	127432243	127445904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_127432322_127432614_127432702_127433733_127433872_127436363_127436490_127437583_127437818_127438819_127438855_127440105_127440197_127441931_127441979_127442748_127442807_127443297_127443361_127444304_127444442_127445548
transcript_33015.known	chr2	+	812	5	FSM	ENSMUSG00000027374.13	ENSMUST00000134101.8	812	5	0	0	0	0	multi-exon	FALSE	canonical	3	1110	junction_4	81.6160982894919	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACTGCATCATAGAAAAC	4164	False	NA	NA	False	AATAAA	-15	NA	127429338	127437977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_127429406_127432614_127432702_127433733_127433872_127436363_127436490_127437583
transcript_33018.known	chr2	-	2778	4	FSM	ENSMUSG00000027375.15	ENSMUST00000028854.15	2778	4	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	8.83176086632785	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTGTCTCACTCTTTTGT	NA	False	NA	-2	True	ATTAAA	-17	NA	127498615	127475145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_127476975_127480508_127480635_127482140_127482309_127497960
transcript_33021.nnic	chr2	-	1407	5	NNC	ENSMUSG00000027377.3	novel	2006	4	NA	NA	-847	-819	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_4	23.2849200127464	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTGGGTTTGGGGAGTC	NA	False	NA	NA	False	AATAAA	-17	NA	127572699	127547124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_127547844_127550756_127550880_127554188_127554357_127571675_127571900_127572526
transcript_33022.known	chr2	-	2006	4	FSM	ENSMUSG00000027377.3	ENSMUST00000028856.3	2006	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	4.54606056566195	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGAGTCTATCGCTTTG	NA	False	NA	2	True	AATAAA	-21	NA	127571852	127546305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_127547844_127550756_127550880_127554188_127554357_127571675
transcript_33023.known	chr2	-	2296	20	FSM	ENSMUSG00000027378.17	ENSMUST00000110357.2	2296	20	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_11	13.7437973922422	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTGTTATATCTAAATT	2791	False	NA	0	True	AATAAA	-16	NA	127630817	127582655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_127583109_127584991_127585037_127587815_127587890_127589919_127590033_127595892_127595993_127598011_127598089_127599598_127599682_127601495_127601607_127603081_127603157_127605698_127605828_127607943_127608039_127610090_127610179_127611534_127611578_127612178_127612313_127614020_127614123_127615817_127616020_127619188_127619314_127621023_127621085_127621982_127622057_127630705
transcript_33024.known	chr2	-	2260	20	FSM	ENSMUSG00000027378.17	ENSMUST00000028857.14	2260	20	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_11	16.3928570350886	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTATATCTAAATTTTTC	2834	False	NA	4	True	AATAAA	-20	NA	127630774	127582651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_127583109_127584991_127585037_127587815_127587890_127589919_127590033_127595892_127595993_127598011_127598089_127599598_127599682_127601495_127601607_127603081_127603157_127605698_127605828_127607943_127608042_127610090_127610179_127611534_127611578_127612178_127612313_127614020_127614123_127615817_127616020_127619188_127619314_127621023_127621085_127621982_127622057_127630705
transcript_33026.known	chr2	-	800	2	FSM	ENSMUSG00000051319.7	ENSMUST00000135091.2	800	2	0	0	0	0	multi-exon	FALSE	canonical	3	537	junction_1	0	495	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGACCAAAGCCTTGGTT	NA	False	NA	-5	True	GATAAA	-14	NA	127634408	127633307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_127633753_127634053
transcript_33028.known	chr2	-	3421	25	FSM	ENSMUSG00000027379.15	ENSMUST00000028858.9	3418	25	0	-3	0	3	multi-exon	TRUE	canonical	0	0	junction_18	145.15221297161	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGACCTAGTTGTTCTAA	NA	False	NA	-5	True	AATAAA	-18	NA	127673785	127643041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_127643359_127644937_127645045_127646101_127646271_127646393_127646552_127646728_127646891_127647199_127647316_127648145_127648290_127649728_127649932_127650886_127650975_127652528_127652704_127654867_127654950_127655748_127655846_127656557_127656669_127656758_127656888_127658008_127658068_127659171_127659399_127661132_127661285_127663594_127663780_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
transcript_3303.nic	chr1	-	659	3	ISM	ENSMUSG00000004880.12	ENSMUST00000005003.12	3510	14	-36	20602	-36	121	5prime_fragment	FALSE	canonical	3	2209	junction_1	121	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTTTGTTTTTTTTTTA	NA	False	NA	NA	False	AATAGA	-32	NA	181669980	181663501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_181663854_181665942_181666122_181669852
transcript_33033.nic	chr2	-	1008	8	ISM	ENSMUSG00000027379.15	ENSMUST00000028858.9	3418	25	-14	20481	-14	1842	5prime_fragment	FALSE	canonical	0	0	junction_1	238.0197213575	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACTTGAGATGCCTTGAG	NA	False	NA	NA	False	TTTAAA	-25	NA	127673799	127663525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_127663780_127663861_127663915_127665878_127665980_127667026_127667071_127669220_127669418_127671357_127671497_127671597_127671658_127673639
transcript_33034.known	chr2	+	5036	4	FSM	ENSMUSG00000027381.17	ENSMUST00000110341.9	5036	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	11.2644968324772	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACTGTTCGATGTGTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	127967958	128004467	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_127968173_127970539_127970935_127989004_127989115_128000150
transcript_33035.known	chr2	-	682	3	FSM	ENSMUSG00000074813.15	ENSMUST00000239374.2	682	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	3.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAATTGTCTGTTTCTTAG	NA	False	NA	NA	False	ATTAAA	-18	NA	128271509	128214025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_128214348_128271013_128271092_128271227
transcript_33037.known	chr2	-	1105	2	FSM	ENSMUSG00000074813.15	ENSMUST00000239199.2	1105	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCTGTTTCTTAGCTAAT	NA	False	NA	NA	False	ATTAAA	-23	NA	128271791	128214020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_128214348_128271013
transcript_33040.known	chr2	+	4807	19	FSM	ENSMUSG00000014353.16	ENSMUST00000110325.8	4807	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	41.8620603741076	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTTTCCTGGGATTATC	NA	False	NA	9	True	AATAAA	-20	NA	128660037	128696181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_128660424_128665002_128665064_128666335_128666431_128668176_128668309_128670325_128670377_128672429_128672521_128673117_128673180_128673369_128673554_128676034_128676135_128679221_128679316_128681067_128681140_128683154_128683264_128683344_128683404_128684515_128684620_128687380_128687455_128688648_128688720_128690924_128690978_128692223_128692255_128693203
transcript_33041.known	chr2	+	2100	19	FSM	ENSMUSG00000014353.16	ENSMUST00000143398.3	2100	19	0	0	0	0	multi-exon	FALSE	canonical	1	36	junction_11	26.3253621315648	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACAACCAGAGAGAGCTACA	NA	False	NA	NA	False	NA	NA	NA	128660222	128693659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_128660424_128665002_128665064_128666335_128666431_128668176_128668309_128670325_128670377_128672429_128672521_128673117_128673180_128673369_128673554_128676034_128676135_128679221_128679316_128682651_128682724_128683154_128683264_128683344_128683404_128684515_128684620_128687380_128687455_128688648_128688720_128690924_128690978_128692223_128692255_128693203
transcript_33045.known	chr2	-	1624	9	FSM	ENSMUSG00000027387.12	ENSMUST00000028866.9	1624	9	0	0	0	0	multi-exon	FALSE	canonical	2	159	junction_3	33.6115214621415	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTTCATACTTGATT	NA	False	NA	1	True	AATAAA	-22	NA	128785997	128768187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_128768732_128770806_128770849_128771766_128771877_128772711_128772824_128773197_128773321_128775118_128775253_128777231_128777467_128781762_128781857_128785767
transcript_33046.nnic	chr2	-	1619	9	NNC	ENSMUSG00000027387.12	novel	1624	9	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	2	42	junction_6	71.0922595997623	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTTTTCATACTTGATT	NA	False	NA	1	True	AATAAA	-22	NA	128786004	128768187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_128768732_128770806_128770849_128771766_128771877_128772711_128772824_128773197_128773321_128775118_128775253_128777243_128777467_128781762_128781857_128785767
transcript_3305.known	chr1	-	11229	14	FSM	ENSMUSG00000022995.17	ENSMUST00000193703.6	11229	14	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_9	54.2155461448742	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTGTATTCATTTTTC	5962	False	NA	0	True	AATAAA	-24	NA	181847226	181723948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_181733463_181733951_181734010_181735862_181735942_181740871_181740939_181744763_181744813_181745822_181745881_181746002_181746149_181746889_181747195_181749222_181749334_181751124_181751406_181758242_181758328_181783958_181784137_181789318_181789485_181847094
transcript_33053.known	chr2	+	4567	7	FSM	ENSMUSG00000027394.14	ENSMUST00000035812.14	4567	7	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_4	11.1118055338555	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTGGTCCTCTTAC	NA	False	NA	29	True	ATTAAA	-23	NA	128907861	128938203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_128908224_128910774_128910854_128917775_128918009_128923129_128923266_128923893_128924164_128930913_128931058_128934860
transcript_33054.known	chr2	+	3998	15	FSM	ENSMUSG00000027395.16	ENSMUST00000103205.11	3998	15	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_10	36.5564282853179	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGATTTTTATTTT	NA	False	NA	15	True	AATAAA	-16	NA	128942914	128968514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_128943184_128944882_128945051_128945497_128945645_128947168_128947302_128949906_128950044_128951150_128951375_128951959_128952132_128954561_128954734_128955420_128955703_128957558_128957693_128959847_128960019_128960959_128961117_128964989_128965187_128965630_128965885_128967133
transcript_33056.known	chr2	+	1325	4	FSM	ENSMUSG00000037938.5	ENSMUST00000035481.5	1325	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_1	75.455652906562	350	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCTAGGTTTGTGTGTT	3825	False	NA	45	True	NA	NA	NA	128971619	128976054	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_128971778_128972097_128972239_128972320_128972487_128975194
transcript_33061.known	chr2	+	3316	11	FSM	ENSMUSG00000027397.15	ENSMUST00000028880.10	3316	11	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_5	146.125973050652	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCTTGTGCTTTTTGTTT	NA	False	NA	22	True	AATAAA	-24	NA	129040683	129053536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419_129042506_129045978_129046076_129048286_129048407_129049529_129049797_129049900_129050460_129050960_129051144_129051791_129051877_129052603
transcript_33063.known	chr2	+	1628	4	FSM	ENSMUSG00000027397.15	ENSMUST00000140907.8	1628	4	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	11.8977121983832	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGTCGACA	NA	False	NA	NA	False	NA	NA	NA	129040720	129043098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_129040913_129041368_129041985_129042102_129042244_129042419
transcript_33064.known	chr2	-	1943	1	FSM	ENSMUSG00000103009.2	ENSMUST00000192413.2	1943	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATTTGTGAGGAAATTG	NA	False	NA	NA	False	ATTAAA	-15	NA	129041114	129039171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_129039200_129041100
transcript_33066.known	chr2	-	3137	9	FSM	ENSMUSG00000048327.7	ENSMUST00000052708.7	3137	9	0	0	0	0	multi-exon	TRUE	canonical	3	256	junction_2	30.0416377715996	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGCCTGTTGTTCTCTT	NA	False	NA	0	True	AATAAA	-20	NA	129139132	129110129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_129111184_129112494_129112682_129114416_129114478_129117409_129117566_129123811_129124020_129126776_129128021_129132877_129132930_129138233_129138301_129139024
transcript_3307.known	chr1	+	1367	3	FSM	ENSMUSG00000026511.8	ENSMUST00000027792.6	1367	3	0	0	0	0	multi-exon	FALSE	canonical	3	1020	junction_2	65.5	543	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTATAGGTTTCTTT	NA	False	NA	26	True	AATAAA	-34	NA	181952314	181959972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_181952541_181956248_181956318_181958900
transcript_33070.known	chr2	+	3644	8	FSM	ENSMUSG00000037902.19	ENSMUST00000049262.14	3644	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_7	35.4193536395697	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTGGGGGTGTTCCATT	NA	False	NA	NA	False	AATAAA	-20	NA	129435474	129474148	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_129435615_129450823_129451181_129457366_129457685_129458142_129458479_129460376_129460491_129463122_129463148_129469865_129469918_129471846
transcript_33072.known	chr2	+	876	6	FSM	ENSMUSG00000037902.19	ENSMUST00000160276.2	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	39.9729908813439	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGGGCTGTGGTCTGTACT	NA	False	NA	NA	False	NA	NA	NA	129435532	129472104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_129435615_129450823_129451181_129460376_129460491_129463122_129463148_129469865_129469906_129471846
transcript_33074.known	chr2	-	1133	8	FSM	ENSMUSG00000027404.17	ENSMUST00000147570.3	1133	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	1649.031750539	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTGCCCTCCAAGGCCC	NA	False	NA	NA	False	NA	NA	NA	130021323	130013706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018548_130018673_130018934_130019087_130021153
transcript_33080.known	chr2	-	1161	7	FSM	ENSMUSG00000027404.17	ENSMUST00000103199.9	1161	7	0	0	0	0	multi-exon	TRUE	canonical	3	3295	junction_4	264.518850409989	2098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTCATTTGTCTTCTGA	NA	False	NA	-11	True	AATAAA	-28	NA	130021323	130013554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_130013864_130014522_130014649_130014955_130015095_130015526_130015680_130017249_130017362_130018934_130019087_130021153
transcript_3309.known	chr1	+	823	2	FSM	ENSMUSG00000026511.8	ENSMUST00000111018.2	823	2	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACCTTTCTTGCCAGGTTC	NA	False	NA	NA	False	NA	NA	NA	181952301	181959484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_181952541_181958900
transcript_33091.nnic	chr2	+	2079	13	NNC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-51	-1	at_least_one_novel_splicesite	FALSE	canonical	3	170	junction_12	786.810487382798	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTATGTGTGTATTTTG	NA	False	NA	24	True	AATAAA	-13	NA	130116298	130121226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332_130120491_130120816
transcript_33099.nic	chr2	+	2407	12	NIC	ENSMUSG00000027405.17	novel	1877	12	NA	NA	-51	1	intron_retention	FALSE	canonical	3	433	junction_11	590.287953263994	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTATGTGTGTATTTTGTT	NA	False	NA	26	True	AATAAA	-15	NA	130116298	130121228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120332
transcript_331.known	chr1	+	1356	1	FSM	ENSMUSG00000056763.17	ENSMUST00000190610.2	1356	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAAAATAGAATCTT	NA	False	NA	NA	False	NA	NA	NA	10108211	10109567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_10108200_10109600
transcript_33100.known	chr2	+	1877	12	FSM	ENSMUSG00000027405.17	ENSMUST00000103198.11	1877	12	0	0	0	0	multi-exon	FALSE	canonical	3	1876	junction_9	231.115011975273	1072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTATTTTGTTTATTG	NA	False	NA	31	True	AATAAA	-20	NA	130116349	130121233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130118544_130118626_130118779_130118951_130119053_130119395_130119545_130119768_130119891_130120075_130120211_130120816
transcript_33114.known	chr2	-	1616	12	FSM	ENSMUSG00000027406.14	ENSMUST00000028892.11	1616	12	0	0	0	0	multi-exon	FALSE	canonical	3	745	junction_6	49.1089192551946	814	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTTTGTGTTTTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	130126467	130121228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_130121647_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
transcript_33115.known	chr2	-	1233	12	FSM	ENSMUSG00000027406.14	ENSMUST00000239288.2	1233	12	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	222.733469301557	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATACTATCTGGTTTTGTG	NA	False	NA	NA	False	AATAAA	-11	NA	130126381	130121236	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_130121358_130122182_130122244_130122376_130122472_130122875_130123023_130123132_130123236_130123326_130123461_130123557_130123691_130123767_130123829_130125628_130125750_130125857_130125957_130126090_130126169_130126301
transcript_3315.known	chr1	-	2048	3	FSM	ENSMUSG00000038633.6	ENSMUST00000035295.6	2048	3	0	0	0	0	multi-exon	FALSE	canonical	3	1138	junction_1	20.5	584	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAAAGTGTCACTGGAGAA	NA	False	NA	NA	False	AATAAA	-16	NA	182110369	182103336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_182104459_182106540_182107284_182110186
transcript_33158.known	chr2	+	2960	7	FSM	ENSMUSG00000027405.17	ENSMUST00000161543.2	2960	7	0	0	0	0	multi-exon	FALSE	canonical	3	1993	junction_1	225.275695291101	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAGAAAGCTCCCAA	NA	False	NA	NA	False	NA	NA	NA	130116365	130120903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_130116397_130116553_130116644_130116951_130117067_130117582_130117745_130117895_130118095_130118355_130119891_130120075
transcript_33165.known	chr2	-	2366	14	FSM	ENSMUSG00000027408.8	ENSMUST00000028897.8	2366	14	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_8	18.681383322448	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTCTTGAGTTCCTATTC	NA	False	NA	-3	True	ATTAAA	-19	NA	130239494	130232694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_130233063_130233157_130233261_130234990_130235131_130235303_130235602_130235685_130235866_130235951_130236149_130236229_130236354_130236656_130236746_130236841_130236993_130237555_130237644_130237748_130237889_130238027_130238138_130238250_130238413_130239278
transcript_3317.known	chr1	-	1405	2	FSM	ENSMUSG00000038633.6	ENSMUST00000132551.2	1405	2	0	0	0	0	multi-exon	FALSE	canonical	3	1179	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	182110369	182106061	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_182107284_182110186
transcript_33170.known	chr2	+	521	3	FSM	ENSMUSG00000027409.6	ENSMUST00000110281.2	521	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGATTTCTTCTCTTCCA	NA	False	NA	NA	False	AATACA	-17	NA	130247178	130247990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_130247210_130247423_130247624_130247700
transcript_33173.known	chr2	+	3161	24	FSM	ENSMUSG00000027411.18	ENSMUST00000028900.11	3161	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	83.6383654878219	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTAGGTTGTGTTCAGG	NA	False	NA	NA	False	NA	NA	NA	130266284	130286189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282283_130282371_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
transcript_33174.nic	chr2	+	2757	23	NIC	ENSMUSG00000027411.18	novel	3161	24	NA	NA	-16	0	intron_retention	FALSE	canonical	0	0	junction_14	85.518025261509	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTGTTGTATGCTGTCTG	NA	False	NA	21	True	AATAAA	-21	NA	130266242	130285654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_130266368_130279541_130279631_130279834_130279933_130280016_130280146_130280226_130280372_130280488_130280605_130280702_130280826_130280965_130281022_130281355_130281446_130281539_130281635_130281760_130281838_130282150_130282500_130282626_130282663_130282819_130282929_130283084_130283220_130283314_130283424_130283527_130283626_130283713_130283822_130284092_130284171_130284254_130284425_130284506_130284604_130285215_130285320_130285433
transcript_3318.known	chr1	+	1898	9	FSM	ENSMUSG00000038576.16	ENSMUST00000153348.8	1898	9	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	5.55512151082224	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACATCCTGCTAGTCCCAC	NA	False	NA	NA	False	NA	NA	NA	182591576	182722797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_182591962_182592570_182592754_182660627_182660841_182681521_182681696_182685986_182686176_182714904_182715097_182716332_182716478_182719447_182719831_182722763
transcript_33184.known	chr2	-	1689	8	FSM	ENSMUSG00000037773.15	ENSMUST00000110277.2	1689	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	13.0868371321129	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTGTCGGGGAGCAGG	7648	False	NA	3	True	AATAAA	-23	NA	130266607	130260878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_130261254_130261549_130261811_130263809_130264057_130264144_130264296_130264385_130264625_130264732_130264813_130265331_130265473_130266412
transcript_33186.known	chr2	-	3496	7	FSM	ENSMUSG00000037773.15	ENSMUST00000089581.11	3496	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_6	6.9940450861191	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAATTGAAGAGTTTAAAA	8057	False	NA	NA	False	AATAAA	-22	NA	130266198	130259602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_130261254_130261549_130261811_130263809_130264057_130264144_130264296_130264385_130264625_130264732_130264813_130265331
transcript_33190.known	chr2	-	3032	6	FSM	ENSMUSG00000037773.15	ENSMUST00000153663.8	3032	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	6.96850055607374	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAAGCTTTTTTGGTTTGT	8069	False	NA	NA	False	ATTAAA	-14	NA	130266186	130260144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_130261254_130261549_130261811_130263809_130264057_130264144_130264625_130264732_130264813_130265331
transcript_33191.known	chr2	+	4278	4	FSM	ENSMUSG00000037740.9	ENSMUST00000145614.2	4278	4	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_2	32.273139846559	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTTTGCTTTTTTGTTGA	385	False	NA	NA	False	AATAAA	-14	NA	130405661	130410615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_130405911_130406000_130406148_130406227_130406352_130406857
transcript_33192.known	chr2	+	1057	3	FSM	ENSMUSG00000037740.9	ENSMUST00000046149.9	1057	3	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_1	21	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGCCCATTTACTGGCT	385	False	NA	14	True	NA	NA	NA	130405661	130407314	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_130405911_130406000_130406352_130406857
transcript_33193.known	chr2	+	537	3	FSM	ENSMUSG00000027301.8	ENSMUST00000028764.6	537	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGACTGGTGTCTAATTGT	NA	False	NA	NA	False	NA	NA	NA	130418092	130418974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_130418250_130418510_130418713_130418796
transcript_33194.nnic	chr2	-	2550	7	NNC	ENSMUSG00000027300.11	novel	3731	6	NA	NA	0	-1328	at_least_one_novel_splicesite	FALSE	canonical	3	113	junction_5	32.7078821624934	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGATTCCTCCTAGCACA	NA	False	NA	NA	False	AATAAA	-19	NA	130471958	130433249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_130433935_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130470408_130470556_130471835
transcript_33196.known	chr2	-	3731	6	FSM	ENSMUSG00000027300.11	ENSMUST00000028761.5	3731	6	0	0	0	0	multi-exon	TRUE	canonical	3	59	junction_5	36.0477461153953	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGACATTTATTTCTCAT	NA	False	NA	NA	False	AATAAA	-15	NA	130471958	130431921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_130433935_130439217_130439377_130441433_130442632_130444476_130444573_130446404_130446547_130471835
transcript_332.known	chr1	-	2204	5	FSM	ENSMUSG00000025917.10	ENSMUST00000139578.8	2204	5	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_4	120.517633564554	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	10108163	10101144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_10102650_10103482_10103549_10104232_10104362_10105153_10105389_10107894
transcript_3320.nic	chr1	+	1157	5	ISM	ENSMUSG00000038576.16	ENSMUST00000153348.8	1898	9	171	36438	171	4754	5prime_fragment	FALSE	canonical	3	24	junction_2	4.15331193145904	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAAATGTCAGACCACAGAG	NA	False	NA	NA	False	AATAAA	-18	NA	182591747	182686359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_182591962_182592570_182592754_182660627_182660841_182681521_182681696_182685986
transcript_33200.known	chr2	-	3015	2	FSM	ENSMUSG00000079043.4	ENSMUST00000110262.3	3015	2	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACAAAGTCTTACTGCAT	NA	False	NA	-5	True	AATAAA	-25	NA	130471947	130455759	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_130458663_130471835
transcript_33206.known	chr2	-	1238	9	FSM	ENSMUSG00000068290.12	ENSMUST00000089559.11	1238	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	130.411607995608	280	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGCCAGAAGTCCCACT	NA	False	NA	71	True	AATAAA	-18	NA	130506579	130495879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_130496243_130496581_130496631_130497105_130497163_130500219_130500259_130500508_130500632_130503656_130503759_130503996_130504110_130505267_130505475_130506394
transcript_33208.known	chr2	+	1390	8	FSM	ENSMUSG00000074797.12	ENSMUST00000103193.5	1390	8	0	0	0	0	multi-exon	TRUE	canonical	3	338	junction_5	87.1842992792643	597	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTGTCTGTCTTGAGTTT	5235	False	NA	18	True	AATAAA	-18	NA	130509529	130523534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_130509856_130513320_130513379_130513475_130513541_130513979_130514054_130516158_130516191_130517548_130517665_130521254_130521332_130522892
transcript_33215.known	chr2	-	3196	21	FSM	ENSMUSG00000074796.11	ENSMUST00000099362.11	3196	21	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_7	21.856063231973	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCAGTCGCCCTCCCTGG	NA	False	NA	-1	True	AATAAA	-22	NA	130539439	130526032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414_130527584_130527668_130527776_130527950_130528210_130528803_130528878_130529078_130529212_130529290_130529405_130529482_130529609_130529706_130529801_130529873_130530078_130532752_130532877_130533309_130533392_130533468_130533701_130533948_130533999_130534085_130534251_130537960_130538024_130538567_130538676_130539278
transcript_33217.nic	chr2	-	1127	5	ISM	ENSMUSG00000074796.11	ENSMUST00000099362.11	3196	21	11829	0	2875	0	3prime_fragment	FALSE	canonical	3	116	junction_4	16.4544826719043	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCAGTCGCCCTCCCTGG	NA	False	NA	-1	True	AATAAA	-22	NA	130527610	130526032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_130526424_130526531_130526702_130526777_130526974_130527150_130527325_130527414
transcript_33220.known	chr2	-	1984	7	FSM	ENSMUSG00000027309.19	ENSMUST00000110243.8	1984	7	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_6	9.03081145609604	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAATAGATATTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	130682065	130647595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_130648869_130652741_130652849_130654764_130654862_130656098_130656224_130662388_130662509_130664340_130664421_130681883
transcript_33221.known	chr2	-	547	2	FSM	ENSMUSG00000085566.2	ENSMUST00000133766.2	547	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTCCTAGTGAGAAATTAC	NA	False	NA	NA	False	NA	NA	NA	130748299	130725529	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_130725908_130748130
transcript_33222.known	chr2	-	874	7	FSM	ENSMUSG00000027327.17	ENSMUST00000184121.8	874	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	340.164380198097	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACGGTGTGGCTTCCTCAC	NA	False	NA	NA	False	NA	NA	NA	131001944	130988713	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130991360_130991463_130993537_130993677_130995513_130995631_131001872
transcript_33226.known	chr2	-	2600	7	FSM	ENSMUSG00000027329.10	ENSMUST00000110218.9	2600	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATCTATTACTGTGTACAA	8032	False	NA	NA	False	NA	NA	NA	131017121	131012235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_131013711_131013821_131013946_131014123_131014179_131014289_131014330_131014542_131014700_131015115_131015228_131016484
transcript_33228.known	chr2	-	832	6	FSM	ENSMUSG00000027327.17	ENSMUST00000028800.12	832	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	282.042124513343	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGCTGTGTGACGGTGTG	NA	False	NA	NA	False	NA	NA	NA	131002001	130988723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_130988896_130989080_130989204_130990075_130990215_130993537_130993681_130995504_130995631_131001872
transcript_3323.nic	chr1	-	1450	9	ISM	ENSMUSG00000030768.13	ENSMUST00000003035.12	4984	10	-20	9927	-15	0	5prime_fragment	FALSE	canonical	3	56	junction_6	14.115040736746	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATCTGCCTCTGCCTTGC	NA	False	NA	-2	True	AATAAA	-13	NA	183003069	182877756	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182955059_182955188_182984515_182984604_183002886
transcript_33230.known	chr2	+	1521	3	FSM	ENSMUSG00000068264.12	ENSMUST00000110208.8	1521	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	10	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCCTCTTTTTGTGCG	NA	False	NA	11	True	ATTAAA	-17	NA	131052359	131055434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_131052602_131053182_131053394_131054366
transcript_33231.known	chr2	+	2959	8	FSM	ENSMUSG00000037523.14	ENSMUST00000130597.8	2959	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	83.1212539435183	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTGTGAGTTCCAAAT	7260	False	NA	11	True	ATTAAA	-16	NA	131075982	131089942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_131076048_131080655_131080831_131081371_131081463_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
transcript_33232.known	chr2	+	2867	7	FSM	ENSMUSG00000037523.14	ENSMUST00000041362.12	2867	7	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_4	7.24377127070024	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTGAGTTCCAAATTTC	7264	False	NA	14	True	ATTAAA	-19	NA	131075986	131089945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_131076048_131080655_131080831_131082234_131082413_131083799_131083970_131085038_131085193_131087122_131087590_131088283
transcript_33234.known	chr2	+	4266	7	FSM	ENSMUSG00000037514.19	ENSMUST00000150843.9	4266	7	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_2	97.0093065409477	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTTGCTTGCATGTA	869	False	NA	5	True	AATAAA	-19	NA	131104419	131141108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_131104736_131115830_131116184_131122076_131122331_131124511_131124689_131129393_131129518_131135318_131135445_131138192
transcript_33237.known	chr2	+	1617	8	FSM	ENSMUSG00000027333.19	ENSMUST00000110180.2	1617	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	45.6709616134134	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACGCTCCTTTGCTTCTCTC	NA	False	NA	15	True	AATAAA	-16	NA	131333912	131367087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131362567_131362974_131363092_131363978_131364140_131366662
transcript_33238.known	chr2	+	2170	8	FSM	ENSMUSG00000027333.19	ENSMUST00000110186.9	2170	8	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	48.183746942177	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131363978_131364140_131366163_131366254_131366662
transcript_3324.nic	chr1	-	1322	8	NIC	ENSMUSG00000030768.13	novel	4984	10	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_6	31.0430905257153	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATCTGCCTCTGCCTTGC	NA	False	NA	-2	True	AATAAA	-13	NA	183003069	182877756	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_182877906_182880115_182880214_182880483_182880612_182881480_182881605_182888681_182888712_182916918_182917441_182984515_182984604_183002886
transcript_33242.known	chr2	+	2270	7	FSM	ENSMUSG00000027333.19	ENSMUST00000028806.12	2270	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_6	10.8269211792745	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTCAGTTCAAAGGCTC	NA	False	NA	31	True	AATAAA	-32	NA	131333683	131367103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131363978_131364140_131366662
transcript_33243.known	chr2	+	1991	7	FSM	ENSMUSG00000027333.19	ENSMUST00000110188.8	1991	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	46.5892214525587	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131364067_131364140_131366662
transcript_33246.known	chr2	+	1919	6	FSM	ENSMUSG00000027333.19	ENSMUST00000110189.9	1919	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	55.41335579082	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131362331_131363092_131366662
transcript_33248.known	chr2	+	1320	6	FSM	ENSMUSG00000027333.19	ENSMUST00000110179.9	1320	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	49.3128786423993	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131362189_131363978_131364140_131366662
transcript_33250.known	chr2	+	2223	6	FSM	ENSMUSG00000027333.19	ENSMUST00000151627.8	2223	6	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	11.7234807118023	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131362014_131363092_131363978_131364140_131366662
transcript_33253.known	chr2	+	985	4	FSM	ENSMUSG00000027333.19	ENSMUST00000110182.9	985	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	65.5303152916436	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGCTTCTCTCCTCAG	NA	False	NA	20	True	AATAAA	-21	NA	131333862	131367092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_131333957_131353903_131354138_131358136_131358364_131366662
transcript_33256.known	chr2	+	2184	3	FSM	ENSMUSG00000079037.10	ENSMUST00000091288.13	2184	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	0.5	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGCGGGGTTTGTTCT	NA	False	NA	7	True	ATTAAA	-17	NA	131751847	131780349	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_131751924_131754114_131754213_131778339
transcript_33257.known	chr2	+	1938	3	FSM	ENSMUSG00000027338.17	ENSMUST00000110171.9	1938	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	6	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACGGTGTCTGGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	131792781	131798050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_131792836_131794928_131795503_131796740
transcript_33264.known	chr2	-	1612	4	FSM	ENSMUSG00000027341.11	ENSMUST00000028816.9	1612	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_2	26.7332502076846	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	4870	False	NA	-2	True	TATAAA	-20	NA	132089727	132081411	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089492
transcript_33265.known	chr2	-	1551	4	FSM	ENSMUSG00000027341.11	ENSMUST00000110163.8	1551	4	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_3	223.123782287371	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGTGTTGTTATTGAT	4908	False	NA	-2	True	TATAAA	-20	NA	132089689	132081411	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089515
transcript_33266.known	chr2	-	1531	4	FSM	ENSMUSG00000027341.11	ENSMUST00000180286.2	1531	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	263.641591728029	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGTGTGTTGTTATTG	4889	False	NA	-4	True	TATAAA	-18	NA	132089708	132081413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_132082547_132085938_132086062_132087875_132087995_132089552
transcript_3327.known	chr1	-	3430	14	FSM	ENSMUSG00000046836.14	ENSMUST00000057062.12	3430	14	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_3	13.1918030852137	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGCTGGATTTATGTGG	NA	False	NA	NA	False	AATAAA	-17	NA	183078536	183057915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078446
transcript_33271.known	chr2	-	359	3	FSM	ENSMUSG00000027341.11	ENSMUST00000143782.2	359	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	297	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTGGGAAAGCTGAAGTG	4918	False	NA	NA	False	NA	NA	NA	132089679	132087239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_132087293_132087875_132087995_132089492
transcript_33275.known	chr2	-	1518	6	FSM	ENSMUSG00000027342.15	ENSMUST00000028817.7	1518	6	0	0	0	0	multi-exon	FALSE	canonical	3	1968	junction_1	234.222629137323	1534	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACGTTGTGCAAAGTTTTC	8225	False	NA	-10	True	AATAAA	-27	NA	132095234	132091081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_132091616_132091693_132091818_132093163_132093359_132093610_132093679_132093822_132093921_132094735
transcript_3328.known	chr1	-	3413	14	FSM	ENSMUSG00000046836.14	ENSMUST00000163528.8	3413	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_13	29.2690033348083	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGTTCGCTGGATTTATGT	NA	False	NA	NA	False	AATAAA	-15	NA	183078800	183057917	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_183060003_183061033_183061194_183062363_183062515_183062778_183062861_183064049_183064136_183065696_183065787_183066600_183066707_183067689_183067763_183069304_183069401_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078725
transcript_33286.nnic	chr2	+	3541	14	NNC	ENSMUSG00000058793.15	novel	8073	13	NA	NA	-31	2294	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_13	131.49004957066	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCGTGTTTGTCACTTGT	NA	False	NA	21	True	AATAAA	-26	NA	132127827	132149542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_132127886_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072_132147682_132147816
transcript_33287.nnic	chr2	+	3575	14	NNC	ENSMUSG00000058793.15	novel	627	5	NA	NA	3396	2294	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	150.186787055044	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCGTGTTTGTCACTTGT	NA	False	NA	21	True	AATAAA	-26	NA	132131254	132149542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_132131347_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072_132147682_132147816
transcript_33288.known	chr2	+	8396	13	FSM	ENSMUSG00000058793.15	ENSMUST00000103181.11	8396	13	0	0	0	0	multi-exon	FALSE	canonical	2	258	junction_5	60.9331942923286	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGCGTGTTTTTTGAT	5244	False	NA	NA	False	AATAAA	-17	NA	132105067	132153970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_132105418_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072
transcript_33289.known	chr2	+	8073	13	FSM	ENSMUSG00000058793.15	ENSMUST00000089461.11	8073	13	0	0	0	0	multi-exon	FALSE	canonical	2	123	junction_1	89.520132744912	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGTGCGTGTTTTTTGAT	NA	False	NA	NA	False	AATAAA	-17	NA	132127858	132153970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_132127886_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072
transcript_33291.nnic	chr2	+	1473	13	NNC	ENSMUSG00000058793.15	novel	627	5	NA	NA	3396	57	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	119.581213686209	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCGTCATTTTTTTTTCT	NA	False	NA	12	True	AATGAA	-14	NA	132131254	132147305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_132131347_132135164_132135302_132136303_132136401_132137450_132137549_132139144_132139285_132139553_132139613_132140388_132140472_132142473_132142562_132143151_132143221_132143999_132144153_132146278_132146399_132146772_132146877_132147072
transcript_33292.nnic	chr2	+	905	5	NNC	ENSMUSG00000058793.15	novel	8073	13	NA	NA	-31	-4	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	200.173050134128	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGGTTTCTGAGCCCTT	NA	False	NA	NA	False	AATAAA	-12	NA	132127827	132138109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_132127886_132135164_132135302_132136303_132136401_132137450_132137732_132137777
transcript_33295.known	chr2	-	3686	20	FSM	ENSMUSG00000027346.16	ENSMUST00000060955.12	3686	20	0	0	0	0	multi-exon	TRUE	canonical	3	65	junction_16	14.3132737727671	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGCTTCCTGATTTGTT	NA	False	NA	0	True	NA	NA	NA	132420153	132371001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132400526_132400603_132406546_132406632_132410539_132410637_132414104_132414175_132419987
transcript_33296.known	chr2	-	3703	20	FSM	ENSMUSG00000027346.16	ENSMUST00000110142.8	3703	20	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_19	19.1733598654971	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGCTTCCTGATTTGT	NA	False	NA	-1	True	NA	NA	NA	132420168	132371002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132400526_132400603_132406546_132406632_132410539_132410637_132414104_132414178_132419987
transcript_33298.known	chr2	-	3612	19	FSM	ENSMUSG00000027346.16	ENSMUST00000149854.8	3612	19	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_15	20.2402239776804	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGCTTCCTGATTTGTT	NA	False	NA	0	True	NA	NA	NA	132420155	132371001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_132372663_132375993_132376155_132376617_132376754_132377281_132377419_132378604_132378671_132380001_132380064_132381818_132381859_132382204_132382283_132384162_132384256_132386311_132386367_132388760_132388894_132389476_132389640_132392233_132392475_132395876_132396001_132398854_132398897_132406546_132406632_132410539_132410637_132414104_132414175_132419987
transcript_33299.nic	chr2	-	545	4	ISM	ENSMUSG00000027346.16	ENSMUST00000060955.12	3686	20	21	35397	5	148	5prime_fragment	FALSE	canonical	3	81	junction_3	12.8322510366134	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAGGAAGAAAGAGAACC	NA	False	NA	NA	False	AATAGA	-37	NA	132420132	132406398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_132406632_132410539_132410637_132414104_132414175_132419987
transcript_333.known	chr1	+	11053	40	FSM	ENSMUSG00000048960.14	ENSMUST00000027056.12	11053	40	0	0	0	0	multi-exon	TRUE	canonical	1	6	junction_1	5.99769844088307	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTTAAGTTTGACTAATTC	NA	False	NA	NA	False	AATAAA	-16	NA	11063688	11373905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_11064134_11131549_11131622_11136017_11136141_11138234_11138340_11150246_11150349_11159940_11160103_11168686_11168821_11171287_11171392_11177826_11177977_11180505_11180651_11182966_11183068_11193344_11193449_11194037_11194088_11202561_11202638_11206988_11207062_11210179_11210323_11210459_11210553_11212872_11213022_11220033_11220120_11223766_11223904_11226464_11226583_11230319_11230505_11232463_11232626_11240076_11240300_11240807_11241016_11252078_11252259_11254669_11254765_11255353_11255437_11256110_11256202_11256860_11256990_11263736_11263779_11270058_11270277_11274289_11274393_11278735_11278880_11301905_11302021_11335902_11335970_11336192_11336384_11355280_11355384_11359476_11359545_11367931
transcript_33301.nnic	chr2	+	1197	4	NNC	ENSMUSG00000044991.11	novel	1076	3	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	15.1070255914995	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGACTCAGTCTATTTC	NA	False	NA	27	True	NA	NA	NA	132528841	132592975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_132528902_132533869_132534052_132551435_132551548_132592132
transcript_33302.known	chr2	+	1076	3	FSM	ENSMUSG00000044991.11	ENSMUST00000061891.11	1076	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	20.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGACTCAGTCTATTTC	NA	False	NA	27	True	NA	NA	NA	132528850	132592975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_132528902_132533869_132534052_132592132
transcript_33303.nnic	chr2	+	1170	3	NNC	ENSMUSG00000044991.11	novel	1076	3	NA	NA	1670	-2	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCCTTGACTCAGTCTATT	NA	False	NA	25	True	NA	NA	NA	132533872	132592973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_132534052_132572619_132572770_132592132
transcript_33304.known	chr2	-	2948	11	FSM	ENSMUSG00000037376.15	ENSMUST00000147336.8	2948	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_6	111.30929880293	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCATTAATGATACAATGCT	NA	False	NA	-12	True	AATAAA	-23	NA	132657975	132646126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652006_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657723
transcript_33305.known	chr2	-	2828	11	FSM	ENSMUSG00000037376.15	ENSMUST00000039554.7	2828	11	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_5	30.9683709613535	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCATTAATGATACAATGCT	NA	False	NA	-12	True	AATAAA	-23	NA	132657974	132646126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_132647533_132648630_132648718_132648816_132648920_132650123_132650210_132650580_132650937_132651748_132651874_132652125_132652210_132652336_132652429_132652908_132653019_132653967_132654096_132657723
transcript_33308.nic	chr2	-	566	4	ISM	ENSMUSG00000037376.15	ENSMUST00000039554.7	2828	11	15	6210	15	0	5prime_fragment	FALSE	canonical	3	367	junction_2	42.9055810925442	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGTCACATTACTTGAAA	NA	False	NA	NA	False	ATTAAA	-15	NA	132657959	132652336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_132652429_132652908_132653019_132653967_132654096_132657723
transcript_33309.known	chr2	+	3179	19	FSM	ENSMUSG00000027353.15	ENSMUST00000028831.15	3179	19	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	21.8867032185704	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATTGTTCAGGTCACAAAA	NA	False	NA	2	True	ATTAAA	-14	NA	132658060	132685815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_132658386_132658993_132659166_132659624_132659709_132661522_132661606_132661898_132662049_132663264_132663369_132665094_132665294_132666644_132666731_132669386_132669539_132669849_132670046_132673567_132673599_132674682_132674824_132676657_132676800_132680006_132680203_132680625_132680846_132681373_132681584_132682663_132682741_132684522_132684713_132685394
transcript_33313.known	chr2	+	735	3	FSM	ENSMUSG00000027353.15	ENSMUST00000135685.2	735	3	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	25.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGGAGAACCAACCAAGAAA	NA	False	NA	NA	False	NA	NA	NA	132658143	132659945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_132658386_132658993_132659166_132659624
transcript_3332.known	chr1	+	4279	10	FSM	ENSMUSG00000042901.11	ENSMUST00000109166.8	4279	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_8	45.1526901978029	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACTCTCCTGTGCATTTT	NA	False	NA	NA	False	NA	NA	NA	183078592	183106331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_183079173_183085612_183085683_183087358_183087413_183087819_183087875_183094595_183094660_183094913_183095018_183097514_183097638_183099746_183099870_183103138_183103257_183103343
transcript_33321.nnic	chr2	+	600	6	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2432	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	272.981024981591	78	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTCTGAGCCCAAAATC	NA	False	NA	25	True	AATAAA	-35	NA	135488394	135493983	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135492537_135492672_135493417_135493478_135493766
transcript_33329.nnic	chr2	+	434	5	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2432	4	at_least_one_novel_splicesite	FALSE	canonical	3	337	junction_4	128.141523324799	76	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488394	135493987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135493417_135493442_135493766
transcript_33330.nnic	chr2	+	466	5	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2432	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	252.149137416728	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTCTGAGCCCAAAATC	NA	False	NA	25	True	AATAAA	-35	NA	135488394	135493983	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135493417_135493478_135493766
transcript_3334.known	chr1	-	816	6	FSM	ENSMUSG00000046836.14	ENSMUST00000193326.6	816	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	52.5714751552589	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTGATTCCATCTGTT	NA	False	NA	NA	False	AATAAA	-31	NA	183078800	183072406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_183072739_183073470_183073568_183074038_183074146_183075897_183076015_183076340_183076429_183078725
transcript_33341.nnic	chr2	+	759	4	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2432	4	intron_retention	FALSE	canonical	3	453	junction_1	106.871677986057	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488394	135493987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_135488469_135490846_135490892_135491052_135491123_135493417
transcript_33344.nnic	chr2	+	364	4	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2432	4	at_least_one_novel_splicesite	FALSE	canonical	3	137	junction_2	130.516920997496	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGAGCCCAAAATCATTG	NA	False	NA	29	True	AATAAA	-39	NA	135488394	135493987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_135488469_135490846_135490892_135493417_135493442_135493766
transcript_33345.nnic	chr2	+	396	4	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2432	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	189.688048003968	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTCTGAGCCCAAAATC	NA	False	NA	25	True	AATAAA	-35	NA	135488394	135493983	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_135488469_135490846_135490892_135493417_135493478_135493766
transcript_33354.nnic	chr2	+	398	3	NNC	ENSMUSG00000084762.2	novel	412	4	NA	NA	-2432	-2652	at_least_one_novel_splicesite	FALSE	canonical	3	453	junction_1	119.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGACAAAAAAATTACCCTT	NA	False	NA	NA	False	AATAAA	-17	NA	135488394	135491331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_135488469_135490846_135490892_135491052
transcript_33363.known	chr2	+	412	4	FSM	ENSMUSG00000084762.2	ENSMUST00000146980.2	412	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	289.483831826389	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAACTCTGAGCCCAAAATC	NA	False	NA	25	True	AATAAA	-35	NA	135490826	135493983	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_135490892_135491052_135491123_135493417_135493478_135493766
transcript_33364.known	chr2	+	2307	9	FSM	ENSMUSG00000039943.17	ENSMUST00000147744.2	2307	9	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	13.6930639376292	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAACATCTACCAGAGTAT	NA	False	NA	2	True	AATAAA	-14	NA	135829795	135856513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_135829823_135836213_135836330_135840596_135840673_135842053_135842230_135844478_135844581_135849259_135849318_135849742_135849830_135852855_135852893_135854885
transcript_33365.known	chr2	-	3178	6	FSM	ENSMUSG00000027274.17	ENSMUST00000110089.9	3178	6	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	119.159389055164	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTATACAATCCTTACTA	NA	False	NA	0	True	AATAAA	-20	NA	136733309	136715699	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_136716627_136718008_136718120_136719534_136719711_136722170_136723560_136727392_136727621_136732962
transcript_33367.known	chr2	-	944	3	FSM	ENSMUSG00000115423.3	ENSMUST00000227806.2	944	3	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_1	8.5	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGCTGCCTTCACAAGT	NA	False	NA	NA	False	AATAAA	-21	NA	136733309	136723190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_136723560_136727392_136727621_136732962
transcript_3337.nic	chr1	-	3037	23	NIC	ENSMUSG00000056050.16	novel	6330	28	NA	NA	40	0	combination_of_known_junctions	FALSE	canonical	3	85	junction_22	21.1026613025369	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGTGTCTGCTGATTCT	NA	False	NA	-1	True	CATAAA	-18	NA	183126917	183107681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_183108509_183109058_183109201_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183126628
transcript_33372.nic	chr2	-	726	3	ISM	ENSMUSG00000027274.17	ENSMUST00000028730.13	2935	6	-25	7491	-18	-52	5prime_fragment	FALSE	canonical	3	17	junction_2	153	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGCTGCCTTCACAAGT	NA	False	NA	NA	False	AATAAA	-21	NA	136733327	136723190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_136723560_136727392_136727621_136733198
transcript_33374.nic	chr2	-	589	3	ISM	ENSMUSG00000027274.17	ENSMUST00000028730.13	2935	6	-25	7628	-18	-189	5prime_fragment	FALSE	canonical	3	17	junction_2	153	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATCTATGCTGGTTATTG	NA	False	NA	-16	True	AATAAA	-27	NA	136733327	136723327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_136723560_136727392_136727621_136733198
transcript_33376.known	chr2	+	4657	5	FSM	ENSMUSG00000062098.12	ENSMUST00000091556.12	4657	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	2.87228132326901	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTGCTTTTTTAGTATTT	NA	False	NA	16	True	AATAAA	-17	NA	138098484	138129342	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_138098675_138120885_138121178_138121668_138121760_138122292_138122412_138125377
transcript_33377.known	chr2	-	2258	14	FSM	ENSMUSG00000039033.12	ENSMUST00000110079.9	2258	14	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	20.460092487948	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGTGTGACTGCTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	139908725	139675399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_139676368_139699621_139699696_139725691_139725803_139752452_139752564_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
transcript_33379.nnic	chr2	-	2186	13	NIC	ENSMUSG00000039033.12	novel	2258	14	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_10	24.6862253538734	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGTGTGACTGCTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	139908722	139675399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_139676368_139699621_139699696_139725691_139725803_139752452_139752564_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139890161_139890230_139899206_139899420_139908673
transcript_33383.known	chr2	-	2127	13	FSM	ENSMUSG00000039033.12	ENSMUST00000099304.4	2127	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	26.3739138796905	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTGTGTGACTGCTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	139908705	139675399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_139676368_139699621_139699696_139725691_139725803_139789076_139789156_139793379_139793500_139819526_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
transcript_33386.nic	chr2	-	2182	8	ISM	ENSMUSG00000039033.12	ENSMUST00000110079.9	2258	14	3	142737	3	315	5prime_fragment	FALSE	canonical	3	57	junction_2	18.1186565254081	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTATTTTCTCAGTATGT	NA	False	NA	NA	False	AATAAA	-17	NA	139908722	139818136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
transcript_33388.nic	chr2	-	1867	8	ISM	ENSMUSG00000039033.12	ENSMUST00000110079.9	2258	14	3	143052	3	0	5prime_fragment	FALSE	canonical	3	57	junction_2	18.1186565254081	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTTCTCAGTGTTTGCC	NA	False	NA	NA	False	NA	NA	NA	139908722	139818451	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_139819634_139827048_139827129_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
transcript_3339.nic	chr1	-	2717	23	NIC	ENSMUSG00000056050.16	novel	6330	28	NA	NA	40	-320	combination_of_known_junctions	FALSE	canonical	3	85	junction_22	21.1026613025369	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACCTCTTAAGCTAGAATA	NA	False	NA	-71	True	AGTAAA	-14	NA	183126917	183108001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_183108509_183109058_183109201_183110600_183110675_183110777_183110847_183111651_183111790_183111946_183112048_183112158_183112227_183112330_183112367_183112487_183112549_183113679_183113782_183114963_183115103_183115257_183115349_183115436_183115493_183116294_183116407_183116484_183116608_183117373_183117479_183117900_183117973_183119505_183119617_183119709_183119788_183120019_183120109_183120812_183120835_183125674_183125807_183126628
transcript_33391.nnic	chr2	-	1790	7	NIC	ENSMUSG00000039033.12	novel	2258	14	NA	NA	3	3	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	30.799080072842	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTCAGTGTTTGCCCAT	NA	False	NA	NA	False	NA	NA	NA	139908722	139818448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_139819634_139837992_139838078_139850618_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
transcript_33392.nic	chr2	-	671	5	ISM	ENSMUSG00000039033.12	ENSMUST00000110079.9	2258	14	3	175068	3	-32016	5prime_fragment	FALSE	canonical	3	59	junction_4	19.0705925445435	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCTTGGATATAAGTTATT	NA	False	NA	NA	False	AATAAA	-14	NA	139908722	139850467	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_139850740_139884013_139884083_139890161_139890230_139899206_139899420_139908673
transcript_33395.known	chr2	-	3396	14	FSM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	0	0	0	0	multi-exon	TRUE	canonical	3	379	junction_8	12.585330053057	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCGTTTGTATAGCATT	6977	False	NA	-12	True	AATAAA	-16	NA	140012484	139961802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_139962826_139965450_139965598_139966847_139966925_139971119_139971208_139980852_139980975_139990672_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012396
transcript_33397.nic	chr2	-	2079	10	ISM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	-52	19084	-52	9843	5prime_fragment	FALSE	canonical	3	379	junction_4	14.7857121556798	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAGAAGAAAAGACTGA	6925	False	NA	NA	False	GATAAA	-33	NA	140012536	139980886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_139980975_139990672_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012396
transcript_33399.nic	chr2	-	1934	9	ISM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	-52	28927	-52	0	5prime_fragment	FALSE	canonical	3	379	junction_3	15.6823945875622	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAAGAAAGGAAAA	6925	False	NA	NA	False	AATACA	-25	NA	140012536	139990729	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_139990835_139996713_139996862_139998974_139999090_140000399_140000553_140001613_140001715_140002302_140002417_140006128_140006503_140009691_140010376_140012396
transcript_334.known	chr1	+	6158	8	FSM	ENSMUSG00000057715.14	ENSMUST00000171690.9	6158	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_7	6.29868791001389	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATTAACATTATGTTA	NA	False	NA	NA	False	AATAAA	-11	NA	11484328	11672035	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_11484862_11582141_11582290_11588801_11588934_11615377_11615507_11633186_11633216_11658597_11658771_11666374_11666542_11667188
transcript_33402.nic	chr2	-	1024	3	ISM	ENSMUSG00000045624.16	ENSMUST00000046030.8	3396	14	-52	44500	-52	-5020	5prime_fragment	FALSE	canonical	3	408	junction_1	13	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGGAGGAGGAGGAGGA	6925	False	NA	23	True	NA	NA	NA	140012536	140006302	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_140006503_140009691_140010376_140012396
transcript_33416.known	chr2	+	1166	11	FSM	ENSMUSG00000027384.7	ENSMUST00000044825.5	1166	11	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_10	17.7042367810646	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACAGTTTGAAGCAAGGTG	NA	False	NA	10	True	AATAAA	-21	NA	140012568	140045609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_140012854_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
transcript_33418.nnic	chr2	+	1093	11	NNC	ENSMUSG00000027384.7	novel	1166	11	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_6	69.9549140518377	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTTATGTTTCCCAGAA	NA	False	NA	11	True	AATAAA	-11	NA	140012562	140045552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_140012854_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030656_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
transcript_3342.known	chr1	+	2384	11	FSM	ENSMUSG00000072258.12	ENSMUST00000192076.3	2384	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_7	9.96042167782067	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAGTAGTATTTTATTC	NA	False	NA	16	True	AATAAA	-27	NA	183170324	183191020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_183170499_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189583_183190053
transcript_33422.known	chr2	+	1200	11	FSM	ENSMUSG00000027384.7	ENSMUST00000125913.2	1200	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	77.5835678478375	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTTATGTTTCCCAGAA	NA	False	NA	11	True	AATAAA	-11	NA	140012949	140045552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_140013326_140013946_140013988_140019153_140019218_140023493_140023542_140025817_140025922_140029663_140029704_140030634_140030833_140035502_140035564_140044785_140044870_140045207_140045291_140045451
transcript_33425.known	chr2	+	3552	4	FSM	ENSMUSG00000068205.15	ENSMUST00000043836.8	3552	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	7.40870359029762	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTTTGTATTATTTGGT	NA	False	NA	NA	False	AATAAA	-22	NA	140237354	140264874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_140237642_140242781_140242899_140260736_140260835_140261824
transcript_33427.known	chr2	+	1049	4	FSM	ENSMUSG00000068205.15	ENSMUST00000124403.2	1049	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	35.6495285928003	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGATTCCTGTTTATGCT	NA	False	NA	NA	False	AATAAA	-17	NA	140237379	140262415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_140237623_140242781_140242899_140260736_140260835_140261824
transcript_33428.known	chr2	-	3977	3	FSM	ENSMUSG00000051379.13	ENSMUST00000110057.3	3977	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	10.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGTGTATCCTTTTTACT	NA	False	NA	1	True	AATAAA	-36	NA	140513389	140500117	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_140503672_140505180_140505380_140513165
transcript_33430.known	chr2	-	3334	3	FSM	ENSMUSG00000051379.13	ENSMUST00000056760.4	3334	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	29	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAGAAAAAAAAAAAAGA	NA	False	NA	NA	False	AATACA	-5	NA	140513320	140501244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_140503672_140504627_140505380_140513165
transcript_33431.known	chr2	+	2061	7	FSM	ENSMUSG00000008333.13	ENSMUST00000008477.13	2061	7	0	0	0	0	multi-exon	FALSE	canonical	3	784	junction_1	113.59540777103	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAACTATTCTGACAGA	1988	False	NA	NA	False	AATAAA	-19	NA	142904958	142914773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_142905019_142906461_142906551_142907095_142907269_142910180_142910322_142911293_142911345_142912807_142912897_142913315
transcript_33433.nnic	chr2	+	1130	7	NNC	ENSMUSG00000008333.13	novel	636	5	NA	NA	-27	-1113	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_1	366.493140757398	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTACTGGTTTATTG	2053	False	NA	13	True	AATAAA	-13	NA	142905023	142913660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_142905266_142906461_142906551_142907095_142907269_142910180_142910322_142911293_142911345_142912807_142912897_142913315
transcript_33435.nic	chr2	+	399	4	ISM	ENSMUSG00000008333.13	ENSMUST00000008477.13	2061	7	0	4516	0	-1087	5prime_fragment	FALSE	canonical	3	784	junction_1	137.998389684646	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAAGAAGAAAGCTAAAA	1988	False	NA	NA	False	AAGAAA	-3	NA	142904958	142910257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_142905019_142906461_142906551_142907095_142907269_142910180
transcript_33438.known	chr2	+	1911	4	FSM	ENSMUSG00000015932.9	ENSMUST00000103172.4	1911	4	0	0	0	0	multi-exon	FALSE	canonical	3	1386	junction_2	119.658774112984	1487	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTTCTTTGTGTGGTTAT	NA	False	NA	NA	False	AATAAA	-19	NA	143757239	143785244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_143757568_143780304_143780613_143781871_143781949_143784046
transcript_33447.known	chr2	-	2512	14	FSM	ENSMUSG00000027423.16	ENSMUST00000110030.10	2512	14	0	0	0	0	multi-exon	FALSE	canonical	3	1124	junction_13	126.932773522376	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTTCTGACTGTTTT	NA	False	NA	NA	False	AAGAAA	-16	NA	144112826	144092042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_144093153_144094364_144094451_144095581_144095742_144096645_144096733_144096822_144096863_144097259_144097336_144097418_144097525_144099019_144099116_144099789_144099914_144100976_144101099_144102644_144102756_144103839_144103945_144112296_144112380_144112620
transcript_3345.nnic	chr1	+	1500	11	NNC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	-10	-826	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	14.0996453856117	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTACAGTGTAGTGGTTC	NA	False	NA	NA	False	NA	NA	NA	183170314	183190194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_183170431_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189583_183190053
transcript_33456.known	chr2	+	2308	5	FSM	ENSMUSG00000027424.12	ENSMUST00000110028.8	2308	5	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	188.862383761299	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTCTTTCAGTGGACC	NA	False	NA	14	True	AATAAA	-16	NA	144112582	144122436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_144112935_144113834_144114405_144118234_144118452_144120913_144121047_144121400
transcript_33458.known	chr2	+	2840	5	FSM	ENSMUSG00000027424.12	ENSMUST00000028910.9	2840	5	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_1	65.1517459474418	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGGTGTATTTATAGGG	NA	False	NA	NA	False	AATAAA	-20	NA	144112819	144123147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_144112993_144113834_144114405_144118234_144118452_144120913_144121047_144121400
transcript_3346.nnic	chr1	+	2326	11	NNC	ENSMUSG00000072258.12	novel	2384	11	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	14.0996453856117	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTAGTAGTATTTTATTC	NA	False	NA	16	True	AATAAA	-27	NA	183170314	183191020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_183170431_183172260_183172385_183177247_183177418_183179117_183179232_183181756_183181956_183183773_183183905_183185480_183185640_183187077_183187145_183187725_183187850_183189427_183189583_183190053
transcript_33460.known	chr2	+	2359	5	FSM	ENSMUSG00000027424.12	ENSMUST00000110027.2	2359	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	194.922420465169	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTCTTTCAGTGGACC	NA	False	NA	14	True	AATAAA	-16	NA	144112860	144122436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_144113264_144113834_144114405_144118234_144118452_144120913_144121047_144121400
transcript_33466.known	chr2	-	1539	4	FSM	ENSMUSG00000037279.14	ENSMUST00000037423.4	1539	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	4.64279609239471	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCTTTTTTAAAATTTT	NA	False	NA	-12	True	AATAAA	-19	NA	144174066	144147094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_144147840_144159630_144159821_144172823_144173042_144173680
transcript_33467.known	chr2	+	3299	11	FSM	ENSMUSG00000027425.19	ENSMUST00000147747.8	3299	11	0	0	0	0	multi-exon	FALSE	canonical	1	81	junction_2	109.46638753517	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCACTCAGCTTGTCTTT	NA	False	NA	40	True	NA	NA	NA	144210918	144249596	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_144211078_144215110_144215290_144217764_144217884_144222626_144222749_144231094_144231277_144235223_144235641_144235735_144236299_144242605_144242743_144244314_144244491_144245918_144246110_144248542
transcript_33469.known	chr2	+	3801	11	FSM	ENSMUSG00000027425.19	ENSMUST00000028911.15	3801	11	0	0	0	0	multi-exon	FALSE	canonical	1	121	junction_10	80.6347319707829	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCACTCAGCTTGTCTTT	NA	False	NA	40	True	NA	NA	NA	144210902	144249596	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_144211078_144215110_144215776_144217764_144217884_144222626_144222749_144231094_144231277_144235223_144235641_144235735_144236299_144242605_144242743_144244314_144244491_144245918_144246110_144248542
transcript_33470.known	chr2	+	693	2	FSM	ENSMUSG00000098387.3	ENSMUST00000183618.3	693	2	0	0	0	0	multi-exon	FALSE	canonical	3	459	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGGATCAGGCGTCAGTGG	NA	False	NA	NA	False	NA	NA	NA	144210915	144215641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_144211078_144215110
transcript_33471.known	chr2	+	4403	9	FSM	ENSMUSG00000027427.14	ENSMUST00000028914.9	4403	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_5	6.30352084156148	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGTTTCTGGTATTAT	597	False	NA	8	True	GATAAA	-24	NA	144369637	144383915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_144369846_144370622_144370741_144374273_144374342_144375077_144375146_144376218_144376332_144377860_144378005_144378202_144378311_144379085_144379278_144380531
transcript_33474.known	chr2	+	2177	2	FSM	ENSMUSG00000027427.14	ENSMUST00000136999.2	2177	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAACCAAACC	621	False	NA	NA	False	NA	NA	NA	144369661	144372615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_144369846_144370622
transcript_33475.known	chr2	-	2170	5	FSM	ENSMUSG00000027428.10	ENSMUST00000028915.6	2170	5	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	20.0873094266007	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTGACTGCTGTGGTGC	NA	False	NA	-9	True	AATAAA	-20	NA	144392789	144384184	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_144385930_144386293_144386380_144389913_144390020_144391023_144391067_144392599
transcript_33478.nic	chr2	+	2776	20	NIC	ENSMUSG00000027429.17	novel	2779	20	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	371	junction_1	64.9806278398403	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGATTTTGTCTCATTTT	NA	False	NA	NA	False	AATAAA	-37	NA	144398160	144432669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_144398245_144401126_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
transcript_33479.known	chr2	+	2779	20	FSM	ENSMUSG00000027429.17	ENSMUST00000028916.15	2779	20	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	107.06740569791	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGATTTTGTCTCATTTT	NA	False	NA	NA	False	AATAAA	-37	NA	144398175	144432669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_144398263_144401126_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
transcript_33480.nnic	chr2	+	2726	20	NNC	ENSMUSG00000027429.17	novel	2779	20	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	132.014898848598	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGATTTTGTCTCATTTT	NA	False	NA	NA	False	AATAAA	-37	NA	144398199	144432669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_144398245_144401137_144401362_144404051_144404110_144406485_144406573_144408682_144408920_144409020_144409107_144409802_144409948_144410535_144410695_144411019_144411136_144414398_144414523_144416586_144416668_144420251_144420342_144421216_144421324_144423863_144424018_144425610_144425689_144427517_144427680_144428293_144428381_144428785_144428942_144429421_144429488_144432205
transcript_33484.known	chr2	+	471	2	FSM	ENSMUSG00000074754.5	ENSMUST00000136628.2	471	2	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	0	228	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACCAGTGTCTTCTTGAAG	NA	False	NA	NA	False	NA	NA	NA	144435973	144437286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_144436126_144436967
transcript_33486.known	chr2	+	1350	6	FSM	ENSMUSG00000027430.13	ENSMUST00000028917.7	1350	6	0	0	0	0	multi-exon	TRUE	canonical	3	290	junction_5	10.373041983912	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTTTTCTGTAGAAATG	NA	False	NA	NA	False	ATTAAA	-20	NA	144441816	144610678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_144442012_144445707_144445799_144459111_144459348_144477677_144477785_144588820_144588994_144610130
transcript_33487.nnic	chr2	+	1187	5	NIC	ENSMUSG00000027430.13	novel	1350	6	NA	NA	72	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	128.50753868937	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTTTTCTGTAGAAATG	NA	False	NA	NA	False	ATTAAA	-20	NA	144441888	144610678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_144442012_144459111_144459348_144477677_144477785_144588820_144588994_144610130
transcript_3349.nnic	chr1	-	1113	8	NNC	ENSMUSG00000073481.10	novel	1917	8	NA	NA	65	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	319.054726288997	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGAATGCTACACCC	NA	False	NA	-24	True	AATAAA	-17	NA	184577703	184545888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184564772_184564914_184566056_184566226_184573450_184573625_184577547
transcript_33494.known	chr2	+	1142	6	FSM	ENSMUSG00000002728.15	ENSMUST00000110000.8	1142	6	0	0	0	0	multi-exon	FALSE	canonical	3	961	junction_2	184.608775522725	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTAATCATCCCTGTC	NA	False	NA	31	True	TATAAA	-16	NA	145745160	145758345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_145745283_145750510_145750536_145753592_145753684_145754312_145754449_145757453_145757600_145757723
transcript_33496.known	chr2	+	1172	6	FSM	ENSMUSG00000002728.15	ENSMUST00000002805.14	1172	6	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	436.248094551713	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCTGTAATCATCCCTGTC	NA	False	NA	31	True	TATAAA	-16	NA	145745160	145758345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_145745283_145750510_145750536_145753592_145753714_145754312_145754449_145757453_145757600_145757723
transcript_335.known	chr1	+	1816	11	FSM	ENSMUSG00000057715.14	ENSMUST00000141512.8	1816	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	10.5834776893042	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGCTTTAGTTCCTCA	NA	False	NA	NA	False	AATAAA	-11	NA	11484335	12003964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_11484862_11582141_11582290_11588801_11588934_11615377_11615507_11633186_11633216_11658597_11658796_11666374_11666542_11818188_11818316_11868704_11868791_11900038_11900116_12003767
transcript_3350.known	chr1	-	1917	8	FSM	ENSMUSG00000073481.10	ENSMUST00000068725.10	1917	8	0	0	0	0	multi-exon	FALSE	canonical	3	760	junction_6	70.0437181264644	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTTCCTCTGTGACTTTT	NA	False	NA	NA	False	NA	NA	NA	184578078	184545264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184564772_184564914_184566056_184566226_184573450_184573625_184577742
transcript_33503.nic	chr2	+	1002	5	NIC	ENSMUSG00000002728.15	novel	1142	6	NA	NA	-16	-107	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	539.338657524194	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTCTGGAAGTTTGTTG	NA	False	NA	-43	True	AGTAAA	-18	NA	145745144	145758238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_145745283_145753616_145753684_145754312_145754449_145757453_145757600_145757723
transcript_33506.known	chr2	+	1561	7	FSM	ENSMUSG00000037143.18	ENSMUST00000116398.8	1561	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATTCCCTAGGTACCAG	NA	False	NA	NA	False	AGTAAA	-11	NA	145776703	145806146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_145776761_145781759_145781912_145788965_145789117_145791838_145791916_145792678_145792747_145792977_145793105_145805217
transcript_33507.known	chr2	-	3428	14	FSM	ENSMUSG00000001767.6	ENSMUST00000001818.5	3428	14	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_8	24.6650940380394	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCCACAGTGATTGTGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	145776934	145759398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_145760521_145761659_145761909_145762516_145762619_145763691_145763932_145765763_145765845_145766634_145766695_145767427_145767620_145768695_145768867_145770040_145770220_145772453_145772621_145773189_145773349_145774165_145774258_145774732_145774886_145776473
transcript_33513.known	chr2	+	2183	14	FSM	ENSMUSG00000074749.11	ENSMUST00000099278.9	2183	14	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_6	16.1728825562271	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGTCACTGTAATTAGGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	146697783	146812017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_146697964_146703039_146703103_146705626_146705790_146712685_146712767_146730940_146731587_146732900_146733205_146777722_146777805_146783929_146784096_146784836_146784900_146792442_146792509_146794897_146794985_146798119_146798217_146811463_146811508_146811876
transcript_33519.known	chr2	+	3434	30	FSM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	0	0	0	0	multi-exon	TRUE	canonical	3	956	junction_9	74.1082057489866	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGTGTCTGGTGTCTGA	NA	False	NA	10	True	AATAAA	-22	NA	146854915	146919920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773_146876819_146878583_146878716_146880088_146880208_146882735_146882872_146883907_146884016_146884093_146884184_146884779_146884853_146889554_146889639_146891211_146891310_146891902_146891983_146893632_146893690_146903168_146903238_146903325_146903458_146905152_146905281_146910711_146910776_146916804_146916947_146919402
transcript_3352.nnic	chr1	-	521	5	NNC	ENSMUSG00000073481.10	novel	633	5	NA	NA	253	0	at_least_one_novel_splicesite	FALSE	canonical	2	33	junction_4	396.13657682673	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGAATGCTACACCC	NA	False	NA	-24	True	AATAAA	-17	NA	184554979	184545888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184554931
transcript_3353.nnic	chr1	-	670	5	NNC	ENSMUSG00000073481.10	novel	633	5	NA	NA	-1659	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	410.378179244462	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGAATGCTACACCC	NA	False	NA	-24	True	AATAAA	-17	NA	184556891	184545888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184556694
transcript_33539.nic	chr2	+	1381	14	ISM	ENSMUSG00000027433.6	ENSMUST00000028921.6	3434	30	9	43116	9	-3403	5prime_fragment	FALSE	canonical	3	956	junction_9	69.62707084233	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAGGATGAAGGTGAGT	NA	False	NA	NA	False	AAGAAA	-4	NA	146854924	146876804	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_146855117_146866427_146866556_146866634_146866747_146867114_146867227_146868300_146868360_146868434_146868525_146869226_146869300_146869514_146869566_146870012_146870171_146871257_146871333_146871414_146871549_146871646_146871705_146871788_146871897_146876773
transcript_3354.known	chr1	-	633	5	FSM	ENSMUSG00000073481.10	ENSMUST00000162261.8	633	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	388.369910652203	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTGAATGCTACACCC	NA	False	NA	-24	True	AATAAA	-17	NA	184559464	184545888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184559304
transcript_33546.known	chr2	+	1116	3	FSM	ENSMUSG00000036992.11	ENSMUST00000109961.8	1116	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	28	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATGTCTAAATCTTGAGA	NA	False	NA	15	True	AATAAA	-19	NA	148514520	148517947	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_148514756_148516383_148516519_148517201
transcript_33548.known	chr2	+	956	2	FSM	ENSMUSG00000036992.11	ENSMUST00000047177.4	956	2	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_1	0	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATGTCTAAATCTTGAGA	NA	False	NA	15	True	AATAAA	-19	NA	148514545	148517947	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_148514756_148517201
transcript_33549.known	chr2	+	4232	6	FSM	ENSMUSG00000027439.10	ENSMUST00000028928.8	4232	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	11.7983049630021	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTCTGCTTTGTAAAAG	371	False	NA	NA	False	AATAAA	-18	NA	148522942	148534869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_148523136_148525513_148526889_148528433_148528529_148529923_148530092_148531995_148532154_148532626
transcript_3355.known	chr1	-	475	5	FSM	ENSMUSG00000073481.10	ENSMUST00000162866.7	475	5	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_4	387.938461614726	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAATGTGAGGCTGTATAA	NA	False	NA	-92	True	AAGAAA	-18	NA	184559454	184545956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184559384
transcript_33552.known	chr2	-	860	3	FSM	ENSMUSG00000027447.7	ENSMUST00000028938.7	860	3	0	0	0	0	multi-exon	FALSE	canonical	3	2071	junction_1	68	2247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTGAGTTGTTTCTGT	NA	False	NA	-6	True	ATTAAA	-20	NA	148717496	148713641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_148713964_148714736_148714851_148717072
transcript_33553.known	chr2	-	758	2	FSM	ENSMUSG00000027447.7	ENSMUST00000149691.2	758	2	0	0	0	0	multi-exon	FALSE	canonical	3	2207	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGGATGTGACACCATGG	NA	False	NA	NA	False	NA	NA	NA	148717371	148714391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_148714851_148717072
transcript_33554.known	chr2	+	2050	4	FSM	ENSMUSG00000074736.11	ENSMUST00000109935.8	2050	4	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	14.290634073484	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCATGATTTACTTCATG	NA	False	NA	NA	False	NA	NA	NA	149672707	149846312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_149672846_149741337_149741896_149772824_149772963_149845096
transcript_33558.known	chr2	+	2797	4	FSM	ENSMUSG00000060336.7	ENSMUST00000073782.4	2797	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5.35412613473634	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAAACAG	NA	False	NA	NA	False	NA	NA	NA	150059992	150082645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_150060119_150078611_150078739_150078948_150079010_150080162
transcript_33559.known	chr2	+	2159	4	FSM	ENSMUSG00000095315.3	ENSMUST00000238230.2	2159	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	5.43650214343336	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACATTTTGGGGAGCATC	NA	False	NA	NA	False	AATAAA	-20	NA	150153350	150168932	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_150153479_150165621_150165749_150165947_150166009_150167089
transcript_3356.known	chr1	-	572	5	FSM	ENSMUSG00000073481.10	ENSMUST00000161359.8	572	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	410.378179244462	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCCGCTATTACGTTTTT	NA	False	NA	-10	True	AATAAA	-31	NA	184559679	184545874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_184546081_184551397_184551545_184554531_184554604_184554685_184554748_184559594
transcript_33561.known	chr2	-	2235	9	FSM	ENSMUSG00000033096.8	ENSMUST00000046399.7	2235	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_7	10.0054672554559	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGCTGATTATTACT	999	False	NA	NA	False	AATAAA	-15	NA	150450487	150424999	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_150426109_150427682_150427876_150428300_150428436_150428911_150429087_150430822_150430940_150431952_150432046_150436221_150436338_150442163_150442281_150450307
transcript_33565.known	chr2	-	3618	14	FSM	ENSMUSG00000027452.12	ENSMUST00000028944.4	3618	14	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_13	14.5093318267649	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGATGTTTTTGGTTGAC	NA	False	NA	-5	True	AATAAA	-27	NA	150510178	150460024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766_150479920_150480283_150480460_150484631_150484832_150501755_150501853_150509804
transcript_33567.nic	chr2	-	2845	11	NIC	ENSMUSG00000027452.12	novel	3618	14	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_10	53.8924855615326	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGATGTTTTTGGTTGAC	5023	False	NA	-5	True	AATAAA	-27	NA	150480066	150460024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_150461713_150463433_150463553_150466718_150466783_150466909_150467038_150467685_150467813_150468132_150468246_150469196_150469290_150470413_150470552_150471665_150471814_150479766_150479920_150479992
transcript_3357.known	chr1	-	3035	2	FSM	ENSMUSG00000039349.6	ENSMUST00000048308.6	3035	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGAGGGCTGTGCCTTCCCT	NA	False	NA	-3	True	AATAAA	-28	NA	184615415	184604122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_184606625_184614882
transcript_33570.known	chr2	+	2540	14	FSM	ENSMUSG00000033068.17	ENSMUST00000094467.6	2540	14	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	18.2695141678424	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTTGCCTCATTAGTG	NA	False	NA	12	True	AATAAA	-17	NA	150590961	150613595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_150591154_150594929_150595254_150597962_150598040_150600662_150600807_150602022_150602099_150603152_150603189_150604295_150604385_150605485_150605566_150606034_150606100_150607369_150607472_150608878_150609017_150610784_150610842_150612211_150612325_150612548
transcript_33573.known	chr2	+	1135	8	FSM	ENSMUSG00000033068.17	ENSMUST00000146517.2	1135	8	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	20.4919098023327	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCTTCTTTGGTGCTTAT	NA	False	NA	NA	False	TTTAAA	-17	NA	150591011	150605732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_150591154_150594929_150595254_150597962_150598040_150600662_150600807_150602022_150602099_150603152_150603189_150604295_150604385_150605485
transcript_33575.known	chr2	+	3909	20	FSM	ENSMUSG00000033059.8	ENSMUST00000045441.8	3909	20	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_10	16.3671517531211	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGGTATCTGCATTTCCA	NA	False	NA	23	True	ATTAAA	-23	NA	150628654	150673678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_150629031_150643457_150643560_150648112_150648192_150650716_150650821_150653173_150653306_150655310_150655423_150655840_150655924_150656905_150657050_150657537_150657631_150658669_150658817_150659557_150659722_150660765_150660881_150661793_150661896_150662654_150662803_150665895_150665955_150668248_150668391_150669024_150669233_150670363_150670499_150671547_150671615_150672281
transcript_33576.known	chr2	-	1999	13	FSM	ENSMUSG00000032046.16	ENSMUST00000056149.15	1999	13	0	0	0	0	multi-exon	FALSE	canonical	2	181	junction_4	35.7897991363771	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGGAATCAGAGTTTCTTC	NA	False	NA	-5	True	AATAAA	-38	NA	150746661	150674412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_150675061_150676198_150676327_150677192_150677272_150679271_150679355_150680234_150680315_150680660_150680699_150681639_150681770_150684165_150684212_150685310_150685342_150688163_150688284_150690271_150690378_150700279_150700405_150746276
transcript_33578.known	chr2	+	1087	7	FSM	ENSMUSG00000027454.11	ENSMUST00000028948.5	1087	7	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_1	28.3058690419888	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAATCTCCTGGTAGCTT	2422	False	NA	23	True	AATAAA	-30	NA	150751513	150773200	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767801_150767919_150769961_150770037_150772760
transcript_3358.known	chr1	+	4418	35	FSM	ENSMUSG00000039318.13	ENSMUST00000194740.6	4418	35	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_25	17.4221203306776	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAATGCAGATGCTTTATT	NA	False	NA	88	True	TATAAA	-19	NA	184936313	185016382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_184936551_184954041_184954107_184965157_184965282_184966317_184966400_184967500_184967549_184967627_184967704_184968156_184968259_184970975_184971076_184972858_184972958_184978832_184978982_184980040_184980121_184980209_184980300_184982076_184982217_184983129_184983347_184983860_184984005_184984227_184984311_184984512_184984578_184987941_184988033_184990694_184990823_184991510_184991725_184992597_184992696_184993526_184993633_184994875_184995037_184995827_184996057_184999097_184999212_184999369_184999477_185003630_185003698_185004768_185004840_185008108_185008145_185009343_185009419_185010344_185010564_185013847_185013938_185014494_185014708_185015578_185015738_185016043
transcript_33582.known	chr2	+	648	5	FSM	ENSMUSG00000027454.11	ENSMUST00000140950.8	648	5	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_1	29.583568074186	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGCGAGAGGAAGACAGTTT	2445	False	NA	NA	False	NA	NA	NA	150751536	150768017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_150751714_150754700_150754766_150758055_150758155_150759788_150759880_150767801
transcript_33584.known	chr2	-	1394	2	FSM	ENSMUSG00000053916.5	ENSMUST00000066640.5	1394	2	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	0	234	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTTAGAGTGATCTTGT	NA	False	NA	-1	True	ATTAAA	-38	NA	150881318	150871604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_150872837_150881156
transcript_33586.known	chr2	+	1486	10	FSM	ENSMUSG00000027455.17	ENSMUST00000089140.13	1486	10	0	0	0	0	multi-exon	FALSE	canonical	1	251	junction_3	435.093348860014	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAATTCTGTTATATAGAAA	NA	False	NA	24	True	AAGAAA	-6	NA	151336101	151353230	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_151336333_151338503_151338602_151342634_151342710_151344374_151344381_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
transcript_33589.known	chr2	+	1364	9	FSM	ENSMUSG00000027455.17	ENSMUST00000028949.16	1364	9	0	0	0	0	multi-exon	FALSE	canonical	3	1010	junction_3	133.71979799192	851	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTACCAATTCTGTTATAT	NA	False	NA	19	True	AAGAAA	-1	NA	151336212	151353225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_151336333_151338503_151338602_151342634_151342710_151344933_151345100_151346030_151346124_151347272_151347383_151348166_151348305_151351428_151351594_151352826
transcript_3359.known	chr1	+	7052	35	FSM	ENSMUSG00000039318.13	ENSMUST00000069652.8	7052	35	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_28	11.2668558845177	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCAGTGTCTGTCTCTGA	NA	False	NA	NA	False	AATAAA	-34	NA	184936313	185018956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_184936551_184954041_184954107_184965157_184965282_184966317_184966400_184967500_184967549_184967627_184967704_184968156_184968259_184970975_184971076_184972858_184972958_184978832_184978982_184980040_184980121_184980209_184980300_184982076_184982217_184983129_184983347_184983860_184984005_184984227_184984311_184984512_184984578_184987941_184988033_184990694_184990823_184991510_184991725_184992597_184992696_184993526_184993633_184994875_184995037_184995827_184996057_184999097_184999272_184999369_184999477_185003630_185003698_185004768_185004840_185008108_185008145_185009343_185009419_185010344_185010564_185013847_185013938_185014494_185014708_185015578_185015738_185016043
transcript_33592.known	chr2	+	1369	8	FSM	ENSMUSG00000027455.17	ENSMUST00000103160.5	1369	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	482.170602376294	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCACTGTGTACACATAATC	NA	False	NA	128	True	NA	NA	NA	151336223	151353334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_151336333_151338503_151338602_151342634_151342710_151344933_151345100_151347272_151347383_151348166_151348305_151351428_151351594_151352826
transcript_33597.known	chr2	+	894	6	FSM	ENSMUSG00000032966.15	ENSMUST00000143230.8	894	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	1104.6957228124	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGATTTGCAAGAATTTTTA	NA	False	NA	123	True	AATAGA	-16	NA	151384540	151402862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_151384665_151384737_151384786_151385932_151386061_151399305_151399419_151401377_151401537_151402540
transcript_33598.known	chr2	+	1658	5	FSM	ENSMUSG00000032966.15	ENSMUST00000044011.12	1658	5	0	0	0	0	multi-exon	FALSE	canonical	3	2063	junction_1	209.807501057517	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTGTCATGGAGGTTGC	NA	False	NA	25	True	AATAAA	-26	NA	151384402	151403612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_151384665_151384737_151384786_151399305_151399419_151401377_151401541_151402540
transcript_33600.known	chr2	+	1399	9	FSM	ENSMUSG00000027456.9	ENSMUST00000028950.9	1399	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	9.20258115965298	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCGGTCATGAAAGTTCC	NA	False	NA	19	True	AATAAA	-19	NA	151414541	151431925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_151414625_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
transcript_33601.nnic	chr2	+	1517	9	NNC	ENSMUSG00000027456.9	novel	1399	9	NA	NA	3300	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	8.04285397107271	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCGGTCATGAAAGTTCC	NA	False	NA	19	True	AATAAA	-19	NA	151417841	151431925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_151418043_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
transcript_33603.nnic	chr2	+	1435	9	NNC	ENSMUSG00000027456.9	novel	1399	9	NA	NA	3575	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.0987313559674	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCGGTCATGAAAGTTCC	NA	False	NA	19	True	AATAAA	-19	NA	151418116	151431925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_151418236_151424612_151424686_151425853_151425924_151426728_151426830_151428246_151428406_151428986_151429163_151429241_151429414_151431124_151431217_151431452
transcript_33605.known	chr2	-	3809	7	FSM	ENSMUSG00000032869.16	ENSMUST00000042452.11	3809	7	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_3	11.5385826204473	178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGTCTTTTGGTGCTAA	NA	False	NA	NA	False	AATAGA	-20	NA	151583230	151557731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_151560606_151561404_151561564_151562742_151562797_151571410_151571597_151576141_151576225_151577393_151577547_151582930
transcript_33607.known	chr2	-	1754	2	FSM	ENSMUSG00000027459.17	ENSMUST00000062047.6	1754	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGACTCTTCTCTGC	NA	False	NA	-1	True	AATAAA	-22	NA	151822139	151811317	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_151812845_151821912
transcript_3361.known	chr1	-	5471	23	FSM	ENSMUSG00000026618.12	ENSMUST00000027921.11	5471	23	0	0	0	0	multi-exon	TRUE	canonical	3	288	junction_20	32.2887284275964	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTCTTTGCTTTGTTCT	NA	False	NA	NA	False	AATAAA	-17	NA	185061593	185016922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_185019389_185020236_185020382_185021549_185021741_185022682_185022829_185023515_185023623_185026940_185027073_185027751_185027878_185028607_185028711_185029669_185029779_185034904_185034999_185035495_185035599_185048090_185048252_185050003_185050156_185050760_185050852_185053033_185053204_185054596_185054713_185055017_185055109_185055189_185055300_185055382_185055433_185055863_185056013_185057699_185057860_185059816_185059940_185061217
transcript_33612.known	chr2	+	2669	5	FSM	ENSMUSG00000027463.15	ENSMUST00000073228.12	2669	5	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	24.8294180358703	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTGACTTGTGTGCTCAC	NA	False	NA	18	True	NA	NA	NA	151838454	151851178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_151838572_151845971_151846599_151847451_151847940_151849400_151849525_151849865
transcript_33614.known	chr2	+	2590	5	FSM	ENSMUSG00000027463.15	ENSMUST00000109861.8	2590	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	23.0976189249022	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATCAAACTACTTAAAC	NA	False	NA	-18	True	NA	NA	NA	151841784	151851142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_151841859_151845971_151846599_151847451_151847940_151849400_151849525_151849865
transcript_33616.known	chr2	+	446	2	FSM	ENSMUSG00000032802.9	ENSMUST00000137751.2	446	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCCTCTCCACATCAGCA	NA	False	NA	NA	False	NA	NA	NA	151947435	151951131	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_151947659_151950908
transcript_33617.known	chr2	+	2812	2	FSM	ENSMUSG00000032802.9	ENSMUST00000041500.8	2812	2	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAACAGTTTTGGTTGTG	NA	False	NA	31	True	NA	NA	NA	151947443	151953296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_151947868_151950908
transcript_33620.known	chr2	-	392	1	FSM	ENSMUSG00000081087.2	ENSMUST00000117430.2	392	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	192	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGTAAAGCATAAATAAAAA	NA	False	NA	NA	False	AAAACA	-35	NA	152027602	152027210	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_152027200_152027600
transcript_33623.known	chr2	+	4206	13	FSM	ENSMUSG00000074698.11	ENSMUST00000099224.10	4206	13	0	0	0	0	multi-exon	FALSE	canonical	2	55	junction_1	32.1674222709181	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCCATGCAGCCTGAGCAA	NA	False	NA	19	True	AATAAA	-20	NA	152068758	152123772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_152068912_152092321_152092532_152096129_152096242_152099297_152099400_152099860_152099912_152100595_152100656_152102678_152102763_152105102_152105214_152114547_152114650_152116012_152116114_152117317_152117467_152118866_152118954_152120888
transcript_33627.nic	chr2	+	506	3	ISM	ENSMUSG00000074698.11	ENSMUST00000124791.8	600	6	-88	6508	-31	1479	5prime_fragment	FALSE	canonical	2	55	junction_1	19	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGAGTATAAGAAAAACAAT	NA	False	NA	NA	False	AAAAAG	-21	NA	152068727	152096241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_152068912_152092321_152092532_152096129
transcript_33630.known	chr2	+	466	4	FSM	ENSMUSG00000074698.11	ENSMUST00000133119.2	466	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	52.8793175279544	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAAGCGTGAAATAAAGATT	NA	False	NA	NA	False	AGTAAA	-12	NA	152068827	152099316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_152068953_152092321_152092532_152096129_152096242_152099297
transcript_33633.known	chr2	-	2252	13	FSM	ENSMUSG00000027466.16	ENSMUST00000028964.14	2252	13	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_12	150.053231295505	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152174573	152158253	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953_152174043_152174415
transcript_33637.known	chr2	-	2384	12	FSM	ENSMUSG00000027466.16	ENSMUST00000109847.9	2384	12	0	0	0	0	multi-exon	FALSE	canonical	3	444	junction_6	68.3604931579153	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAAAGGTGTCATGCTTGA	NA	False	NA	-12	True	ATTAAA	-16	NA	152174332	152158253	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_152158835_152160231_152160376_152160632_152160732_152161043_152161224_152164079_152164192_152165091_152165253_152166186_152166361_152166444_152166561_152168135_152168335_152169166_152169261_152172879_152173025_152173953
transcript_3364.known	chr1	+	1226	10	FSM	ENSMUSG00000026617.17	ENSMUST00000210277.2	1226	10	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_7	59.2152382790481	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAATACGCTTAAGACTT	NA	False	NA	3	True	ATTAAA	-17	NA	185064368	185088978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185082033_185082079_185084378_185084577_185086153_185086260_185088674
transcript_33646.known	chr2	-	2026	4	FSM	ENSMUSG00000032715.10	ENSMUST00000040312.7	2026	4	0	0	0	0	multi-exon	FALSE	canonical	3	926	junction_3	7.71722460186015	415	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGGTGACTTTCTCT	NA	False	NA	-4	True	AATAAA	-29	NA	152185952	152179341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_152180608_152181634_152181928_152184956_152185248_152185776
transcript_33647.nnic	chr2	-	1999	4	NNC	ENSMUSG00000032715.10	novel	2026	4	NA	NA	-6006	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	427.130737206615	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCTTGGTGACTTTCTCT	NA	False	NA	-4	True	AATAAA	-29	NA	152191958	152179341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_152180608_152181634_152181928_152184956_152185248_152191809
transcript_33649.known	chr2	-	1455	3	FSM	ENSMUSG00000059361.7	ENSMUST00000079278.5	1455	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCGTGGCTTCCTTTTGA	8689	False	NA	-2	True	AATAAA	-17	NA	152218558	152210674	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_152211844_152216015_152216211_152218467
transcript_33650.known	chr2	+	1743	13	FSM	ENSMUSG00000019188.17	ENSMUST00000089059.9	1743	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	48.170054667466	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGGAGCTCTCAGCAGCTC	NA	False	NA	21	True	ATTAAA	-35	NA	152511407	152546956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017_152528107_152530582_152530669_152530756_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152545914_152546115_152546541
transcript_33651.known	chr2	+	5204	12	FSM	ENSMUSG00000019188.17	ENSMUST00000125366.8	5204	12	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_7	14.82905345753	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGTCTCTTCTTATTCGT	NA	False	NA	NA	False	AAGAAA	-12	NA	152511380	152550590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_152511685_152519461_152519561_152522970_152523054_152528017_152528107_152530582_152530669_152530756_152530883_152531763_152531822_152533712_152533797_152536406_152536444_152537401_152537505_152542102_152542189_152546541
transcript_33653.known	chr2	+	912	1	FSM	ENSMUSG00000042814.9	ENSMUST00000062148.9	912	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	62	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAATCGGGGTGTTGTAAC	NA	False	NA	101	True	AATAAA	-23	NA	152528954	152529866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_152529000_152529900
transcript_33654.known	chr2	+	934	2	FSM	ENSMUSG00000042745.10	ENSMUST00000038368.9	934	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGCTGTGACTTCTTGGA	4422	False	NA	13	True	ATTAAA	-17	NA	152578170	152579330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_152578666_152578891
transcript_33655.known	chr2	+	727	5	FSM	ENSMUSG00000009876.14	ENSMUST00000010020.12	727	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	3.69966214673719	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTGGACTATCTGTTAT	NA	False	NA	NA	False	AATAAA	-31	NA	152596092	152606957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_152596145_152597074_152597160_152598929_152599095_152602557_152602690_152606664
transcript_33657.known	chr2	-	2568	3	FSM	ENSMUSG00000007659.19	ENSMUST00000109820.5	2568	3	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	91.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAACCACAGCCTTGGCTCT	NA	False	NA	-9	True	AATAAA	-18	NA	152672586	152622591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_152624203_152671346_152672023_152672305
transcript_33658.nic	chr2	-	2468	3	NIC	ENSMUSG00000007659.19	novel	2417	3	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	154.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCCTTGGCTCTGCGC	NA	False	NA	-5	True	AATAAA	-22	NA	152672637	152622587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_152624203_152671346_152672023_152672460
transcript_33659.known	chr2	-	2417	3	FSM	ENSMUSG00000007659.19	ENSMUST00000007803.12	2417	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_2	89.5	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCCTTGGCTCTGCGC	NA	False	NA	-5	True	AATAAA	-22	NA	152673648	152622587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_152624203_152671346_152672023_152673522
transcript_33660.nic	chr2	-	2585	3	NIC	ENSMUSG00000007659.19	novel	2568	3	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_2	150.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCCTTGGCTCTGCGC	NA	False	NA	-5	True	AATAAA	-22	NA	152672581	152622587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_152624203_152671346_152672041_152672305
transcript_33661.nic	chr2	-	2415	3	NIC	ENSMUSG00000007659.19	novel	2417	3	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_2	148	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACAGCCTTGGCTCTGCGC	NA	False	NA	-5	True	AATAAA	-22	NA	152673628	152622587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_152624203_152671346_152672041_152673522
transcript_33662.known	chr2	+	3483	18	FSM	ENSMUSG00000027469.17	ENSMUST00000109816.8	3483	18	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_2	86.1429969118501	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCTCTTGTTGTCCTAG	2708	False	NA	NA	False	NA	NA	NA	152689897	152736574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
transcript_33663.nnic	chr2	+	2801	18	NNC	ENSMUSG00000027469.17	novel	3483	18	NA	NA	6	-638	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_16	195.159929093745	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGTGGTTTCAGTCAC	2731	False	NA	15	True	AATAAA	-14	NA	152689920	152735936	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_152690030_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734053_152734221_152735503
transcript_33664.nic	chr2	+	2847	18	NIC	ENSMUSG00000027469.17	novel	4365	18	NA	NA	-6	-638	combination_of_known_junctions	FALSE	canonical	3	164	junction_2	166.868304785146	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTGTGGTTTCAGTCAC	2719	False	NA	15	True	AATAAA	-14	NA	152689908	152735936	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_152690030_152696840_152696936_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
transcript_33666.known	chr2	+	3654	18	FSM	ENSMUSG00000027469.17	ENSMUST00000028969.9	3654	18	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	172.681016802699	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGCTCTTGTTGTCCTAG	2725	False	NA	NA	False	NA	NA	NA	152689914	152736574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_152690218_152696840_152696923_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
transcript_33668.known	chr2	+	4365	18	FSM	ENSMUSG00000027469.17	ENSMUST00000164120.8	4365	18	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	220.211647171926	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGACTTGCCTTGGTCATGG	2694	False	NA	13	True	NA	NA	NA	152689883	152737241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_152690218_152696840_152696936_152709103_152709278_152711572_152711696_152715009_152715137_152717460_152717593_152718486_152718613_152722023_152722146_152722934_152723087_152724113_152724283_152726093_152726233_152726930_152727148_152730022_152730116_152731065_152731243_152732410_152732558_152733362_152733475_152734032_152734221_152735503
transcript_33679.known	chr2	-	1299	5	FSM	ENSMUSG00000027472.15	ENSMUST00000150545.8	1299	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	103.576964137785	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGTTGTCACCCACC	8639	False	NA	NA	False	AATAAA	-21	NA	152857347	152850809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_152851657_152852177_152852259_152854300_152854376_152855929_152856006_152857127
transcript_3368.known	chr1	+	2200	9	FSM	ENSMUSG00000026617.17	ENSMUST00000027916.13	2200	9	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_6	39.6957176531676	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAATTGCCTTTATTCCTTC	NA	False	NA	NA	False	ATTAAA	-21	NA	185064345	185089974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674
transcript_33680.known	chr2	-	1273	5	FSM	ENSMUSG00000027472.15	ENSMUST00000028972.9	1273	5	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_2	13.6656503687164	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGTTGTCACCCACC	8639	False	NA	NA	False	AATAAA	-21	NA	152857347	152850809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_152851657_152852177_152852259_152854300_152854376_152855929_152856006_152857153
transcript_33686.nnic	chr2	+	2162	13	NNC	ENSMUSG00000003283.16	novel	2090	13	NA	NA	-805	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	20.5877188310572	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGGTCAGCTTCTCTGTCT	NA	False	NA	17	True	AATAAA	-27	NA	152949582	152993359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_152949942_152966089_152966208_152970182_152970226_152970962_152971063_152971763_152971863_152973140_152973245_152975988_152976139_152976543_152976697_152978617_152978798_152980181_152980259_152986338_152986493_152990866_152990999_152992866
transcript_33687.known	chr2	+	2090	13	FSM	ENSMUSG00000003283.16	ENSMUST00000189688.2	2090	13	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_9	8.17346655682615	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGGTCAGCTTCTCTGTCT	NA	False	NA	17	True	AATAAA	-27	NA	152950387	152993359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_152950675_152966089_152966208_152970182_152970226_152970962_152971063_152971763_152971863_152973140_152973245_152975988_152976139_152976543_152976697_152978617_152978798_152980181_152980259_152986338_152986493_152990866_152990999_152992866
transcript_33690.known	chr2	+	3896	18	FSM	ENSMUSG00000068040.11	ENSMUST00000089027.3	3896	18	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_1	53.5920770883495	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAGGGTGCGGATTGAAG	NA	False	NA	41	True	AATAAA	-30	NA	153003222	153052386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454_153046545_153050526
transcript_33694.known	chr2	+	2274	17	FSM	ENSMUSG00000068040.11	ENSMUST00000137446.8	2274	17	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_1	54.9846214295415	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATCTCAGCATTGTAATCT	NA	False	NA	NA	False	CATAAA	-15	NA	153003222	153046782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_153003492_153020808_153020923_153024307_153024408_153029182_153029352_153029450_153029584_153030873_153030998_153032750_153032870_153032970_153033083_153033849_153033921_153036196_153036330_153037230_153037313_153037409_153037486_153040269_153040354_153042562_153042739_153044257_153044322_153045701_153045822_153046454
transcript_33696.nnic	chr2	+	1551	8	NNC	ENSMUSG00000046020.14	novel	5600	7	NA	NA	-25	57374	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	36.8604649665603	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGCCAAATATGAACCAGT	NA	False	NA	NA	False	TATAAA	-10	NA	153083427	153169541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_153083646_153085557_153085680_153090368_153090552_153091600_153091714_153101519_153101713_153103117_153103361_153107614_153108074_153169521
transcript_33697.known	chr2	+	5600	7	FSM	ENSMUSG00000046020.14	ENSMUST00000049863.12	5600	7	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_4	7.06320670013903	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGCATGCCTTCATA	NA	False	NA	NA	False	NA	NA	NA	153083452	153112167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_153083646_153085557_153085680_153090368_153090552_153091600_153091714_153101519_153101713_153103117_153103361_153107614
transcript_3370.known	chr1	+	1046	8	FSM	ENSMUSG00000026617.17	ENSMUST00000110965.2	1046	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	90.255872102482	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTAATACGCTTAAGACTT	NA	False	NA	3	True	ATTAAA	-17	NA	185064376	185088978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_185064461_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185084378_185084577_185086153_185086260_185088674
transcript_33702.nnic	chr2	-	3069	10	NNC	ENSMUSG00000056941.18	novel	1343	10	NA	NA	-3	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	59.527771296728	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTATGGGTTTGTTTGT	NA	False	NA	NA	False	ATTAAA	-15	NA	153474663	153458851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_153460234_153460337_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474513
transcript_33703.nnic	chr2	-	2165	10	NNC	ENSMUSG00000056941.18	novel	1343	10	NA	NA	-34	926	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	59.527771296728	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGATTGCTTAAATATTC	NA	False	NA	NA	False	NA	NA	NA	153474735	153459827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_153460234_153460337_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474513
transcript_33704.known	chr2	-	1343	10	FSM	ENSMUSG00000056941.18	ENSMUST00000109782.2	1343	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	72.7254264636584	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAGCTCTGAATCCA	NA	False	NA	-19	True	ATTAAA	-17	NA	153474660	153460753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474107_153474183_153474513
transcript_33705.nnic	chr2	-	1430	10	NNC	ENSMUSG00000056941.18	novel	1343	10	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_9	73.7879845684016	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGAAAAGCTCTGAATCCA	NA	False	NA	-19	True	ATTAAA	-17	NA	153474671	153460753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474107_153474259_153474513
transcript_33706.known	chr2	-	3210	9	FSM	ENSMUSG00000056941.18	ENSMUST00000071852.10	3210	9	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_3	11.9373363863133	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTATGGGTTTGTTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	153474701	153458852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_153461433_153462365_153462415_153463689_153463740_153463963_153464055_153464570_153464609_153464691_153464749_153470384_153470488_153471112_153471167_153474513
transcript_33709.known	chr2	+	7336	7	FSM	ENSMUSG00000027479.15	ENSMUST00000028981.9	7336	7	0	0	0	0	multi-exon	FALSE	canonical	3	1002	junction_3	91.867204884732	235	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAAATGGCTGTGTTTGG	NA	False	NA	NA	False	AATAAA	-20	NA	153583193	153615230	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_153583340_153588175_153588300_153597850_153597997_153599844_153600053_153603455_153603578_153606866_153607020_153608793
transcript_3371.nnic	chr1	+	876	7	NNC	ENSMUSG00000026617.17	novel	2200	9	NA	NA	8	2732	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_6	99.9566572737071	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAGTGTGGAAGTTGATG	NA	False	NA	NA	False	AATAAA	-17	NA	185064353	185081633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_185064461_185070302_185070430_185073419_185073525_185077511_185077620_185078871_185078921_185080940_185081033_185081345
transcript_33721.known	chr2	+	1637	15	FSM	ENSMUSG00000038572.8	ENSMUST00000045959.8	1637	15	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	7.50951777032701	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTGTCTGAGTTTGCTG	NA	False	NA	5	True	AATAAA	-15	NA	154065661	154082822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_154065814_154066857_154067075_154069010_154069116_154069982_154070115_154070773_154070859_154070950_154071015_154071386_154071473_154072092_154072276_154074753_154074808_154075108_154075259_154076410_154076479_154076607_154076654_154078677_154078742_154080747_154080828_154082671
transcript_33722.known	chr2	-	2160	15	FSM	ENSMUSG00000027487.12	ENSMUST00000109731.8	2160	15	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_14	23.0212856251934	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTGTCTACTTTTTTCA	5389	False	NA	-9	True	AATAAA	-18	NA	154214930	154177299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214600_154214775_154214881
transcript_33723.nic	chr2	-	2081	14	NIC	ENSMUSG00000027487.12	novel	1970	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_13	25.3818180276853	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCTTCCTTGTCTACTT	5668	False	NA	-15	True	AATAAA	-12	NA	154214651	154177305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214501
transcript_33724.known	chr2	-	1970	14	FSM	ENSMUSG00000027487.12	ENSMUST00000028990.10	1970	14	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_3	9.02265393460642	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGCTTCCTTGTCTACTT	5680	False	NA	-15	True	AATAAA	-12	NA	154214639	154177305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_154177538_154184220_154184362_154187785_154187936_154190570_154190702_154192737_154192794_154194101_154194200_154195109_154195341_154196009_154196131_154202476_154202688_154207881_154207983_154210133_154210169_154210731_154210836_154212555_154212876_154214600
transcript_33730.known	chr2	-	1829	13	FSM	ENSMUSG00000027489.16	ENSMUST00000000895.13	1829	13	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_6	10.0840220150494	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCCCCTGTCTCT	7311	False	NA	-15	True	AATAAA	-24	NA	154400786	154386318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_154387088_154387174_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388801_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
transcript_33731.nnic	chr2	-	1889	13	NNC	ENSMUSG00000027489.16	novel	1829	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	11.513277359447	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTCCCCTGTCTCT	7287	False	NA	-15	True	AATAAA	-24	NA	154400810	154386318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_154387088_154387174_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388837_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
transcript_33736.nic	chr2	-	1216	12	NIC	ENSMUSG00000027489.16	novel	1829	13	NA	NA	0	-78	intron_retention	FALSE	canonical	3	34	junction_5	10.4470328738723	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGACTGCAGCCCTGCC	7287	False	NA	NA	False	NA	NA	NA	154400810	154387042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_154387267_154387945_154388024_154388147_154388261_154388589_154388644_154388720_154388801_154388956_154389076_154389344_154389482_154396566_154396665_154396819_154396846_154397503_154397613_154398976_154399002_154400657
transcript_3374.known	chr1	+	4906	32	FSM	ENSMUSG00000026615.15	ENSMUST00000046514.13	4906	32	0	0	0	0	multi-exon	FALSE	canonical	3	1945	junction_14	331.30791485156	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATTTGGTTCATCCTGCA	NA	False	NA	22	True	AATAAA	-24	NA	185095240	185160557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381_185142434_185143354_185143565_185143899_185143973_185145351_185145432_185145645_185145748_185146526_185146683_185147950_185148149_185150408_185150583_185152323_185152485_185156507_185156587_185160048_185160114_185160193
transcript_33743.known	chr2	-	2755	7	FSM	ENSMUSG00000027490.18	ENSMUST00000000894.6	2755	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	459.079392794851	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGCTGGGTTTGAAACTCT	9674	False	NA	-21	True	AATAAA	-16	NA	154411640	154401553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_154402856_154402950_154403171_154403266_154403382_154404857_154405011_154405814_154406035_154406337_154406429_154410986
transcript_33746.known	chr2	-	2789	4	FSM	ENSMUSG00000000876.12	ENSMUST00000000896.11	2789	4	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	13.4246870437348	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGTGCTTTGCAGTCGTTG	NA	False	NA	NA	False	NA	NA	NA	154445628	154427677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_154430013_154434084_154434284_154438121_154438185_154445436
transcript_33749.known	chr2	-	560	3	FSM	ENSMUSG00000000876.12	ENSMUST00000109703.3	560	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	94.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCAAGTTTTCTGTTTTG	NA	False	NA	NA	False	AATAAA	-30	NA	154445608	154437165	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_154437491_154438121_154438185_154445436
transcript_33750.known	chr2	+	1616	5	FSM	ENSMUSG00000038467.16	ENSMUST00000044277.10	1616	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	13.5738719604982	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGCTGTGTGTTCAGTCAAT	NA	False	NA	30	True	ATTAAA	-22	NA	154498937	154536705	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_154499292_154531437_154531616_154533129_154533245_154534468_154534596_154535863
transcript_33754.nic	chr2	+	1519	9	NIC	ENSMUSG00000027593.16	novel	1802	10	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_1	44.2965856472031	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCTGAGGTGGAATGG	NA	False	NA	6	True	AATAAA	-16	NA	154632970	154709164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_154633152_154662926_154663010_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
transcript_33756.known	chr2	+	1759	9	FSM	ENSMUSG00000027593.16	ENSMUST00000116389.9	1759	9	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	53.4051437129421	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTGCTTGTTTATTTTG	NA	False	NA	23	True	AATAAA	-33	NA	154633029	154709181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_154633469_154699188_154699454_154701597_154701671_154701830_154701879_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
transcript_33757.known	chr2	+	1747	9	FSM	ENSMUSG00000027593.16	ENSMUST00000058089.13	1747	9	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	14.5945195193264	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTGCTTGTTTATTTTG	NA	False	NA	23	True	AATAAA	-33	NA	154633076	154709181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_154633469_154662926_154663010_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
transcript_33758.nic	chr2	+	1418	8	NIC	ENSMUSG00000027593.16	novel	1802	10	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	53.0813776484863	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTCTGAGGTGGAATGG	NA	False	NA	6	True	AATAAA	-16	NA	154632988	154709164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_154633152_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
transcript_33759.known	chr2	+	1709	8	FSM	ENSMUSG00000027593.16	ENSMUST00000109701.10	1709	8	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	30.0557305480255	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCTGAGGTGGAATGGT	NA	False	NA	7	True	AATAAA	-17	NA	154633015	154709165	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_154633469_154699188_154699454_154701597_154701671_154703759_154703927_154705469_154705584_154705733_154705970_154707827_154707877_154708813
transcript_3376.nic	chr1	+	3232	21	ISM	ENSMUSG00000026615.15	ENSMUST00000046514.13	4906	32	-18	18154	-18	7	5prime_fragment	FALSE	canonical	3	1945	junction_14	260.900608469969	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAAAATCTTGCCGAATG	NA	False	NA	NA	False	NA	NA	NA	185095222	185142403	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687_185139951_185142381
transcript_33761.known	chr2	-	1041	4	FSM	ENSMUSG00000074656.13	ENSMUST00000161172.3	1041	4	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_3	5764.94448272391	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGAAAAAGAAGAA	3772	False	NA	-51	True	NA	NA	NA	154734715	154726294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_154726367_154729623_154729728_154730102_154730281_154734028
transcript_33763.known	chr2	-	2312	10	FSM	ENSMUSG00000074656.13	ENSMUST00000166171.8	2312	10	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	4169.46393510879	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTAGTGCTCCATTGCTTT	3785	False	NA	-16	True	AATAAA	-24	NA	154734702	154713337	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_154714091_154714159_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
transcript_33764.known	chr2	-	2542	9	FSM	ENSMUSG00000074656.13	ENSMUST00000099173.11	2542	9	0	0	0	0	multi-exon	FALSE	canonical	3	11792	junction_7	843.012372017754	324	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCATTGCTTTTGTGTGTT	3632	False	NA	-8	True	AATAAA	-32	NA	154734855	154713329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_154714821_154715468_154715555_154718535_154718593_154719590_154719740_154720389_154720485_154726230_154726367_154729623_154729728_154730102_154730281_154734609
transcript_33765.known	chr2	-	3785	3	FSM	ENSMUSG00000074656.13	ENSMUST00000147136.2	3785	3	0	0	0	0	multi-exon	FALSE	canonical	3	11792	junction_1	580	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAGAAGATGAAATACTAG	3736	False	NA	-19	True	AAAAAG	-24	NA	154734751	154726262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_154729728_154730102_154730281_154734609
transcript_33766.known	chr2	-	2543	10	FSM	ENSMUSG00000027597.16	ENSMUST00000054607.16	2543	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	366.363443645113	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTCTAAGTACCCTCTG	NA	False	NA	-8	True	AATAAA	-30	NA	154916417	154901229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_154902501_154904068_154904264_154905699_154905818_154905908_154905997_154906073_154906282_154906733_154906847_154907456_154907607_154909242_154909319_154910747_154910939_154916284
transcript_33771.known	chr2	+	5159	25	FSM	ENSMUSG00000027598.17	ENSMUST00000029126.15	5159	25	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_8	21.5151351765836	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGCCTTTTCGTCTGCT	NA	False	NA	57	True	AATAAA	-17	NA	154975428	155068775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_154975506_154980115_154980193_155005312_155005404_155010603_155010746_155014376_155014502_155015853_155015992_155020961_155021008_155022473_155022632_155024077_155024274_155025654_155025751_155027349_155027525_155031356_155031427_155034045_155034131_155041254_155041384_155044126_155044200_155045200_155045273_155048212_155048302_155050978_155051139_155051906_155052041_155052359_155052501_155054256_155054378_155054917_155055023_155059910_155060008_155062127_155062201_155066286
transcript_33775.known	chr2	+	684	4	FSM	ENSMUSG00000047459.15	ENSMUST00000109682.9	684	4	0	0	0	0	multi-exon	FALSE	canonical	3	1428	junction_1	142.385236438177	800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGTGTCTTTACTAGA	NA	False	NA	19	True	AGTAAA	-21	NA	155078454	155092197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_155078538_155084650_155084727_155089690_155089859_155091840
transcript_33777.known	chr2	+	788	4	FSM	ENSMUSG00000047459.15	ENSMUST00000150602.2	788	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	813.64788999228	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGAATCAGTTCGCCCTTG	NA	False	NA	-90	True	NA	NA	NA	155078527	155092055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_155078857_155084650_155084727_155089690_155089859_155091840
transcript_33778.known	chr2	+	534	4	FSM	ENSMUSG00000047459.15	ENSMUST00000135831.2	534	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	796.677405785359	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAAGGGTCGCTCTGCCCA	NA	False	NA	NA	False	NA	NA	NA	155078730	155092000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_155078861_155084650_155084727_155089690_155089859_155091840
transcript_33779.known	chr2	+	826	3	FSM	ENSMUSG00000027602.10	ENSMUST00000154596.2	826	3	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_2	23	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCCCTTTGCCTCCAGCTG	NA	False	NA	6	True	AATAAA	-18	NA	155118808	155119988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_155118934_155119017_155119125_155119394
transcript_3378.known	chr1	+	5638	20	FSM	ENSMUSG00000026615.15	ENSMUST00000192284.6	5638	20	0	0	0	0	multi-exon	FALSE	canonical	3	1945	junction_14	246.149122650716	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAGAAAATCTTG	NA	False	NA	NA	False	NA	NA	NA	185095240	185142396	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971_185111099_185111741_185111935_185113996_185114169_185117073_185117308_185118442_185118528_185119255_185119316_185126559_185126671_185128226_185128364_185129256_185129465_185130590_185130704_185131418_185131537_185133505_185133866_185139157_185139392_185139687
transcript_33783.known	chr2	-	1636	12	FSM	ENSMUSG00000038383.17	ENSMUST00000077626.13	1636	12	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_4	21.4987987363815	222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTGTTCTGATGACATGT	NA	False	NA	0	True	AATAAA	-23	NA	155199350	155120162	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155120570_155134609_155134753_155139002_155139128_155140965_155141110_155143120_155143276_155156421_155156520_155170500_155170602_155173068_155173179_155177280_155177344_155178601_155178662_155187567_155187633_155199185
transcript_33789.known	chr2	+	3979	4	FSM	ENSMUSG00000038375.16	ENSMUST00000043237.14	3979	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	13.490737563232	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTCTGCCTCAGCTGAG	4041	False	NA	9	True	AATAAA	-21	NA	155223733	155231770	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_155223938_155227209_155227385_155227800_155228090_155228459
transcript_33790.nnic	chr2	-	3356	10	NIC	ENSMUSG00000038369.15	novel	7101	16	NA	NA	7844	0	combination_of_known_splicesites	FALSE	canonical	3	120	junction_7	21.7102126505784	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAAGGTATGTTATTGGA	NA	False	NA	-19	True	AATAAA	-17	NA	155274859	155232584	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_155233141_155237639_155237792_155241574_155241612_155244591_155244661_155253444_155253567_155256731_155257849_155260797_155260945_155262886_155263790_155264730_155264860_155274735
transcript_33791.known	chr2	+	2145	19	FSM	ENSMUSG00000027605.19	ENSMUST00000103142.12	2145	19	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	21.9854750030813	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGACTCTTGTCCAGGAT	2166	False	NA	NA	False	NA	NA	NA	155360026	155404000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_155360205_155363900_155364097_155391110_155391203_155391395_155391500_155391718_155391792_155392022_155392099_155392274_155392390_155393109_155393149_155397773_155397912_155398252_155398424_155398697_155398832_155399016_155399150_155399229_155399287_155399468_155399550_155400510_155400620_155402541_155402611_155402949_155403127_155403665_155403741_155403872
transcript_33792.known	chr2	+	2931	18	FSM	ENSMUSG00000027605.19	ENSMUST00000029135.15	2931	18	0	0	0	0	multi-exon	FALSE	canonical	2	49	junction_8	8.02030295659528	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTTTTTTAGGTATCTG	2007	False	NA	19	True	AATAAA	-23	NA	155359867	155404666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_155360205_155363900_155364097_155391110_155391203_155391395_155391500_155391718_155391792_155392022_155392099_155392274_155392390_155397773_155397912_155398252_155398424_155398697_155398832_155399016_155399150_155399229_155399287_155399468_155399550_155400510_155400620_155402541_155402611_155402949_155403127_155403665_155403741_155403872
transcript_33799.known	chr2	-	1963	13	FSM	ENSMUSG00000027610.18	ENSMUST00000079691.13	1963	13	0	0	0	0	multi-exon	FALSE	canonical	3	779	junction_12	109.121491925285	555	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTCATTGTTTCATGTAC	8350	False	NA	-2	True	AATAAA	-19	NA	155434730	155405100	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155429361_155429497_155434613
transcript_338.known	chr1	-	2564	8	FSM	ENSMUSG00000042414.8	ENSMUST00000047577.7	2564	8	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_7	84.2663415993041	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAACACTTATGCTAC	NA	False	NA	-58	True	AATAAA	-10	NA	13197387	13183680	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_13184712_13186003_13186106_13188986_13189190_13192584_13192856_13194586_13194745_13194842_13194897_13195389_13196081_13197333
transcript_33803.known	chr2	-	1724	12	FSM	ENSMUSG00000027610.18	ENSMUST00000130881.8	1724	12	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_11	301.306960254025	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAATGACTCATTGTT	8446	False	NA	-10	True	AATAAA	-11	NA	155434634	155405108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155405640_155406679_155406870_155408722_155408805_155409612_155409808_155413438_155413506_155414843_155414922_155415014_155415096_155419441_155419559_155420208_155420349_155420631_155420708_155423807_155423954_155434613
transcript_33808.known	chr2	-	2614	15	FSM	ENSMUSG00000027603.16	ENSMUST00000029131.11	2614	15	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_14	5.44593089061054	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGCTTGATTTCTGTTT	707	False	NA	NA	False	ATTAAA	-24	NA	155356768	155332298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155333037_155335528_155335629_155336765_155336904_155337561_155337680_155337793_155337944_155340682_155340772_155340933_155341062_155342622_155342711_155344555_155344753_155345047_155345122_155345331_155345400_155346623_155346742_155347874_155348027_155348245_155348482_155356548
transcript_33810.known	chr2	+	3563	2	FSM	ENSMUSG00000027605.19	ENSMUST00000149788.2	3563	2	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAACAAAAAACTAAACAACA	2092	False	NA	NA	False	ATTAAA	-33	NA	155359952	155367211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_155360205_155363900
transcript_33813.known	chr2	-	3204	19	FSM	ENSMUSG00000038324.14	ENSMUST00000041059.12	3204	19	0	0	0	0	multi-exon	TRUE	canonical	3	309	junction_12	37.6501520663235	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGACTTTGTCCATGATGT	NA	False	NA	7	True	ATTAAA	-42	NA	155534304	155476190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155477061_155477155_155477363_155478115_155478229_155479577_155479687_155479967_155480109_155481392_155481484_155482393_155482478_155483508_155483611_155485311_155485371_155486847_155486980_155492338_155492506_155495412_155495599_155499655_155499864_155505576_155505706_155508121_155508178_155510331_155510390_155512959_155513077_155514909_155515039_155534058
transcript_33815.known	chr2	-	2290	11	FSM	ENSMUSG00000038312.11	ENSMUST00000040833.5	2290	11	0	0	0	0	multi-exon	TRUE	canonical	3	287	junction_6	17.8672885463911	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGAGTGCATTAGCGTCAG	NA	False	NA	NA	False	AATAAA	-12	NA	155571395	155543596	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155544513_155547574_155547697_155550851_155550997_155552763_155552889_155555257_155555400_155557929_155558142_155560183_155560310_155564351_155564458_155568554_155568595_155570810_155570922_155571150
transcript_33817.known	chr2	-	1615	2	FSM	ENSMUSG00000074649.7	ENSMUST00000124586.2	1615	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCTGTACAAACCTATGAAT	7099	False	NA	NA	False	NA	NA	NA	155661346	155659649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155661004_155661085
transcript_3382.nic	chr1	+	908	7	ISM	ENSMUSG00000026615.15	ENSMUST00000192284.6	5638	20	-22	31316	-22	0	5prime_fragment	FALSE	canonical	3	2037	junction_4	266.097517630077	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGAAGATTTTGAGAAGGT	NA	False	NA	NA	False	NA	NA	NA	185095218	185111080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_185095441_185099727_185099813_185101773_185101874_185103085_185103243_185105114_185105255_185106314_185106410_185110971
transcript_33823.known	chr2	-	1500	6	FSM	ENSMUSG00000027613.16	ENSMUST00000029142.15	1500	6	0	0	0	0	multi-exon	TRUE	canonical	3	1052	junction_5	244.745255316625	1937	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGTGCTGTGTGTGTGTGT	NA	False	NA	-3	True	ATTAAA	-22	NA	155668845	155661751	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155662032_155664756_155664939_155665111_155665289_155665784_155665961_155668044_155668131_155668246
transcript_33832.known	chr2	-	1382	2	FSM	ENSMUSG00000027613.16	ENSMUST00000109638.2	1382	2	0	0	0	0	multi-exon	FALSE	canonical	3	1052	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTCCTTATGAAATG	NA	False	NA	NA	False	AATAAA	-16	NA	155668583	155667085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155668131_155668246
transcript_33837.known	chr2	-	2633	10	FSM	ENSMUSG00000005882.19	ENSMUST00000109636.11	2633	10	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_1	57.3294572333165	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAAACTTTACTGTGTG	NA	False	NA	-58	True	NA	NA	NA	155772230	155688840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554_155763648_155771932
transcript_33844.known	chr2	-	2313	9	FSM	ENSMUSG00000005882.19	ENSMUST00000109632.8	2313	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	148.423328270862	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCTCCTGGAATGGATG	NA	False	NA	-33	True	AATAAA	-18	NA	155771963	155688815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155690447_155693278_155693393_155729028_155729138_155743217_155743276_155751272_155751346_155752276_155752385_155753660_155753757_155763554_155763648_155771932
transcript_3385.known	chr1	+	5836	4	FSM	ENSMUSG00000026614.8	ENSMUST00000061093.7	5836	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	3.68178700572909	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTCCTGGACTCTGTTA	NA	False	NA	NA	False	ATTAAA	-19	NA	185187044	185200959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_185187877_185188548_185188627_185194883_185195124_185196273
transcript_33853.known	chr2	-	1997	6	FSM	ENSMUSG00000005882.19	ENSMUST00000152818.8	1997	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	208.429940267707	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTCCTGGAATGGATGGA	NA	False	NA	-31	True	AATAAA	-20	NA	155771980	155688813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155690447_155693278_155693393_155700031_155700052_155753665_155753757_155763554_155763646_155771932
transcript_33857.known	chr2	-	1234	9	FSM	ENSMUSG00000005882.19	ENSMUST00000152766.8	1234	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	146.61514246489	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTTTTTCTTTGTTCCA	NA	False	NA	-4	True	ATTAAA	-20	NA	155771938	155689866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155690447_155693278_155693393_155700031_155700110_155729028_155729138_155743217_155743276_155752284_155752385_155753660_155753757_155763554_155763648_155771932
transcript_33859.known	chr2	+	1254	8	FSM	ENSMUSG00000038241.17	ENSMUST00000109618.2	1254	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	9.61291648072041	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTAGTTAACTCATTCA	NA	False	NA	NA	False	AATAAA	-16	NA	155798513	155809714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_155798583_155803791_155804075_155804819_155804877_155805632_155805716_155806029_155806196_155806908_155807016_155807232_155807485_155809477
transcript_3386.known	chr1	-	2761	3	FSM	ENSMUSG00000097615.2	ENSMUST00000180623.2	2761	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTCTCAGTCTTTGTGT	NA	False	NA	NA	False	AATAAA	-22	NA	185187765	185179312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_185181412_185186201_185186331_185187232
transcript_33865.known	chr2	+	1377	13	FSM	ENSMUSG00000005881.14	ENSMUST00000006035.13	1377	13	0	0	0	0	multi-exon	FALSE	canonical	3	758	junction_4	74.7846445171437	635	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGTCTCAGTGTGATT	NA	False	NA	16	True	AATAAA	-19	NA	155849964	155860199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_155850149_155850284_155850356_155850483_155850572_155850779_155850900_155852359_155852454_155853019_155853186_155853268_155853327_155857908_155857941_155858625_155858723_155858808_155858874_155859499_155859637_155859716_155859773_155859990
transcript_3387.known	chr1	+	1065	2	FSM	ENSMUSG00000102185.2	ENSMUST00000194748.2	1065	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAACCGCCCAGTTCCTT	8771	False	NA	NA	False	ATTAAA	-15	NA	185219490	185230356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_185219608_185229408
transcript_33873.nic	chr2	+	1214	12	NIC	ENSMUSG00000038180.12	novel	747	9	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	5.06486846443059	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGTTTGTGCTAAAGAA	NA	False	NA	12	True	ATTAAA	-23	NA	155907636	155911421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_155907806_155908053_155908159_155908486_155908554_155908724_155908787_155909008_155909053_155909231_155909258_155909374_155909484_155909666_155909743_155909856_155909973_155910290_155910459_155911056_155911147_155911239
transcript_33875.known	chr2	+	1473	12	FSM	ENSMUSG00000038180.12	ENSMUST00000038860.12	1473	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	5.51781487472492	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGTTTGTGCTAAAGAA	NA	False	NA	12	True	ATTAAA	-23	NA	155907163	155911421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_155907592_155908053_155908159_155908486_155908554_155908724_155908787_155909008_155909053_155909231_155909258_155909374_155909484_155909666_155909743_155909856_155909973_155910290_155910459_155911056_155911147_155911239
transcript_33876.known	chr2	-	3492	17	FSM	ENSMUSG00000074643.13	ENSMUST00000109608.9	3492	17	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_15	81.3740399328926	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCAGTGGCCGCTCTTGT	NA	False	NA	-5	True	AATAAA	-16	NA	155953863	155913766	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155945268_155945318_155953705
transcript_33878.known	chr2	-	3441	16	FSM	ENSMUSG00000074643.13	ENSMUST00000109607.10	3441	16	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_15	28.8510350286124	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGGCCGCTCTTGTTG	NA	False	NA	-3	True	AATAAA	-18	NA	155953859	155913764	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155915582_155915718_155915956_155916095_155916230_155918156_155918209_155919318_155919374_155919475_155919610_155919694_155919755_155919848_155919936_155920066_155920154_155920251_155920342_155920493_155920575_155920671_155920744_155920819_155920895_155920982_155921163_155921258_155921385_155953705
transcript_33880.known	chr2	-	2051	13	FSM	ENSMUSG00000027618.18	ENSMUST00000029147.16	2051	13	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	23.0952135493242	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTGAATTTTTGAGC	3106	False	NA	-2	True	AATAAA	-17	NA	155986106	155965558	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970357_155970516_155973572_155973708_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939
transcript_33886.nnic	chr2	-	1587	9	NNC	ENSMUSG00000027618.18	novel	2051	13	NA	NA	5482	0	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_8	81.7823903722556	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTGAATTTTTGAGC	3208	False	NA	-2	True	AATAAA	-17	NA	155976247	155965558	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_155966248_155967200_155967291_155968238_155968323_155968930_155969013_155969585_155969692_155970357_155970516_155973572_155973708_155974552_155974647_155976098
transcript_33888.nnic	chr2	-	866	7	NNC	ENSMUSG00000027618.18	novel	1649	4	NA	NA	-5	6424	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	101.365674663566	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCGTGTGTATTTGTGATT	3101	False	NA	NA	False	NA	NA	NA	155986111	155974002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_155974157_155974552_155974647_155976325_155976479_155981648_155981733_155984045_155984163_155985286_155985379_155985939
transcript_3389.known	chr1	-	1578	5	FSM	ENSMUSG00000039246.9	ENSMUST00000045388.8	1578	5	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_3	16.3477827242718	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAGTGTATAATAATA	NA	False	NA	NA	False	AATAAA	-26	NA	185849507	185819927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_185820966_185821640_185821757_185832389_185832560_185846460_185846561_185849353
transcript_33891.known	chr2	+	569	3	FSM	ENSMUSG00000067847.14	ENSMUST00000088610.11	569	3	0	0	0	0	multi-exon	FALSE	canonical	3	748	junction_1	118.5	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCTATTTTTACCTAGTA	6351	False	NA	17	True	AATAAA	-22	NA	155985958	155987717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_155986201_155986378_155986510_155987521
transcript_33892.known	chr2	+	379	3	FSM	ENSMUSG00000067847.14	ENSMUST00000119950.2	379	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	474	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAGTCTATTTTTACCTA	6552	False	NA	14	True	AATAAA	-19	NA	155986159	155987714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_155986201_155986364_155986510_155987521
transcript_33893.known	chr2	-	6635	3	FSM	ENSMUSG00000089824.11	ENSMUST00000109604.9	6635	3	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_2	80.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCACAGTACTTCTTTG	NA	False	NA	-2	True	AATAAA	-37	NA	155953876	155933877	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155940293_155945268_155945318_155953705
transcript_33894.known	chr2	-	6667	3	FSM	ENSMUSG00000089824.11	ENSMUST00000059647.12	6667	3	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_2	24	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGCACAGTACTTCTTTG	NA	False	NA	-2	True	AATAAA	-37	NA	155953876	155933877	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155940293_155945268_155945350_155953705
transcript_33896.known	chr2	-	709	3	FSM	ENSMUSG00000027618.18	ENSMUST00000109600.2	709	3	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_2	22	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCGCGGGTCAATGGGAC	3112	False	NA	0	True	TTTAAA	-6	NA	155986100	155983706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155984163_155985286_155985379_155985939
transcript_33898.known	chr2	+	550	2	FSM	ENSMUSG00000067847.14	ENSMUST00000109597.10	550	2	0	0	0	0	multi-exon	FALSE	canonical	3	985	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCAGTCTATTTTTACCTA	6545	False	NA	14	True	AATAAA	-19	NA	155986152	155987714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_155986510_155987521
transcript_3392.known	chr1	-	584	4	FSM	ENSMUSG00000039246.9	ENSMUST00000195481.2	584	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	56.8174464598878	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATTCCTGACCAGCATAT	NA	False	NA	NA	False	NA	NA	NA	185849485	185820729	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_185820966_185821640_185821757_185846460_185846561_185849353
transcript_33922.known	chr2	-	2127	18	FSM	ENSMUSG00000027620.17	ENSMUST00000153514.8	2127	18	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_15	799.195928097666	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	False	NA	0	True	AATAAA	-15	NA	156022104	155989859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156016016_156016089_156019255_156019306_156021096_156021161_156021806
transcript_33923.known	chr2	-	2120	18	FSM	ENSMUSG00000027620.17	ENSMUST00000155837.8	2120	18	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_15	717.627699835322	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTGCTCATTATCCC	NA	False	NA	0	True	AATAAA	-15	NA	156022096	155989859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156020799_156020873_156021096_156021161_156021806
transcript_33934.known	chr2	-	2711	17	FSM	ENSMUSG00000027620.17	ENSMUST00000029149.13	2711	17	0	0	0	0	multi-exon	FALSE	canonical	3	1090	junction_5	453.136943808105	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACAAGAAAATTTTCGTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	156022087	155989168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996192_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
transcript_33935.known	chr2	-	2810	17	FSM	ENSMUSG00000027620.17	ENSMUST00000109587.9	2810	17	0	0	0	0	multi-exon	FALSE	canonical	3	1358	junction_5	409.933526432945	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCGTTTTTCAAATGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	156022158	155989158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_155990112_155990204_155990284_155991155_155991262_155992654_155992737_155996158_155996210_156000319_156000398_156000956_156001162_156003487_156003554_156003747_156003886_156004648_156004802_156006725_156006844_156009457_156009512_156009604_156009671_156014747_156014943_156019255_156019306_156021096_156021161_156021806
transcript_3395.known	chr1	-	1321	5	FSM	ENSMUSG00000001305.6	ENSMUST00000001339.6	1321	5	0	0	0	0	multi-exon	FALSE	canonical	3	944	junction_3	58.7962583843564	1007	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTTATCTTTTCTATT	NA	False	NA	-30	True	CATAAA	-6	NA	186481555	186453174	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_186453744_186468312_186468512_186469784_186469883_186471800_186472061_186481360
transcript_3396.known	chr1	+	1275	2	FSM	ENSMUSG00000097784.2	ENSMUST00000180869.2	1275	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAAAATAAAAGGGGGAG	NA	False	NA	NA	False	NA	NA	NA	186481592	186485118	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_186482363_186484613
transcript_33960.known	chr2	-	699	5	FSM	ENSMUSG00000027620.17	ENSMUST00000152919.3	699	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	947.747988655212	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGGCCATGAAGAACGTAGC	NA	False	NA	-26	True	NA	NA	NA	156022069	156019280	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_156019306_156019552_156019827_156020799_156020873_156021096_156021161_156021806
transcript_33963.known	chr2	-	672	4	FSM	ENSMUSG00000027620.17	ENSMUST00000132929.8	672	4	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_1	893.526844712694	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAACTGCTCAAAACAC	NA	False	NA	NA	False	NA	NA	NA	156022116	156019080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_156019306_156020799_156020873_156021096_156021161_156021806
transcript_33969.nic	chr2	-	493	3	ISM	ENSMUSG00000027620.17	ENSMUST00000109584.8	667	4	-27	2562	-27	25	5prime_fragment	FALSE	canonical	3	1623	junction_1	363	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTTTGACTAAGGAACC	NA	False	NA	-1	True	NA	NA	NA	156022185	156019255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_156019306_156021096_156021161_156021806
transcript_3397.known	chr1	+	3212	1	FSM	ENSMUSG00000039224.2	ENSMUST00000045108.2	3212	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGAAGAAATGGTCTATAT	NA	False	NA	NA	False	NA	NA	NA	186699612	186702824	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_186699600_186702800
transcript_33971.known	chr2	-	715	3	FSM	ENSMUSG00000027620.17	ENSMUST00000137340.2	715	3	0	0	0	0	multi-exon	FALSE	canonical	3	533	junction_1	908	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCAAAAAAGAGGAAAAAAAA	NA	False	NA	-34	True	AATAGA	-6	NA	156022065	156020480	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_156020873_156021096_156021161_156021806
transcript_33972.known	chr2	-	1008	2	FSM	ENSMUSG00000027620.17	ENSMUST00000128243.2	1008	2	0	0	0	0	multi-exon	FALSE	canonical	3	2349	junction_1	0	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAGGAAAAAAAACC	NA	False	NA	-32	True	AATAGA	-8	NA	156022132	156020478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_156021161_156021806
transcript_33973.known	chr2	+	5737	18	FSM	ENSMUSG00000038116.17	ENSMUST00000037401.10	5737	18	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	27.9815806939402	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTCAGTCACATTACTG	NA	False	NA	9	True	AATAAA	-18	NA	156038561	156151872	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_156038718_156065254_156065370_156093695_156093868_156096145_156096231_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385_156134485_156135333_156135499_156136016_156136196_156138568_156138669_156140440_156140637_156144702_156145100_156146550_156146735_156149213
transcript_33976.nic	chr2	+	1836	11	ISM	ENSMUSG00000038116.17	ENSMUST00000037401.10	5737	18	-15	17424	-15	0	5prime_fragment	FALSE	canonical	3	289	junction_1	26.5510828404417	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAGAAAAAGAAAAAGAAA	NA	False	NA	NA	False	ACTAAA	-38	NA	156038546	156134448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_156038718_156065254_156065370_156093695_156093868_156096145_156096231_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385
transcript_33977.nnic	chr2	+	1700	11	NNC	ENSMUSG00000038116.17	novel	5737	18	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	98.1965376171686	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAGAAAAAGAAAAAGAAA	NA	False	NA	NA	False	ACTAAA	-38	NA	156038662	156134448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_156038718_156065254_156065370_156093695_156093868_156096145_156096231_156106200_156106281_156109094_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385
transcript_33979.nic	chr2	+	1659	10	ISM	ENSMUSG00000038116.17	ENSMUST00000037401.10	5737	18	99	21873	7	-4449	5prime_fragment	FALSE	canonical	3	289	junction_1	25.954851588627	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTATCTTGGCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	156038660	156129999	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_156038718_156065254_156065370_156093695_156093868_156096145_156096231_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720
transcript_3398.known	chr1	+	1639	6	FSM	ENSMUSG00000039210.17	ENSMUST00000044812.12	1639	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	31.740195336513	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTATGGTTTATTTTAA	NA	False	NA	NA	False	AAGAAA	-11	NA	186947740	186966614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_186947874_186957699_186958417_186962980_186963043_186965327_186965511_186965943_186966024_186966150
transcript_33983.nnic	chr2	+	1657	10	NIC	ENSMUSG00000038116.17	novel	5737	18	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	98.616478727154	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAGAAAAAGAAAAAGAAA	NA	False	NA	NA	False	ACTAAA	-38	NA	156038640	156134448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_156038718_156065254_156065370_156093695_156093868_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385
transcript_33985.known	chr2	+	5524	17	FSM	ENSMUSG00000038116.17	ENSMUST00000152617.8	5524	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	116.307176799198	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATGTGTCAGTCACATTA	NA	False	NA	6	True	AATAAA	-15	NA	156038653	156151869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_156038718_156093695_156093868_156096145_156096231_156106200_156106281_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385_156134485_156135333_156135499_156136016_156136200_156138575_156138669_156140440_156140637_156144702_156145100_156146550_156146735_156149213
transcript_33989.nnic	chr2	+	1577	9	NIC	ENSMUSG00000038116.17	novel	5737	18	NA	NA	-13	0	combination_of_known_splicesites	FALSE	canonical	2	2	junction_3	107.282337782134	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAGAAAAAGAAAAAGAAA	NA	False	NA	NA	False	ACTAAA	-38	NA	156038640	156134448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_156038718_156065254_156065370_156093695_156093868_156109074_156109463_156114461_156114576_156115602_156115792_156118408_156118589_156129720_156130000_156134385
transcript_33992.known	chr2	-	4915	1	FSM	ENSMUSG00000102869.3	ENSMUST00000192863.3	4915	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGGCGTCTCTACTGC	NA	False	NA	NA	False	AATAAA	-17	NA	156234899	156229984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_156230000_156234900
transcript_33993.known	chr2	+	5904	21	FSM	ENSMUSG00000027624.21	ENSMUST00000109574.8	5904	21	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_12	32.516303602962	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGACTCCCTCAGCCTC	7780	False	NA	13	True	AATAAA	-28	NA	156262967	156385134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_156263220_156280504_156280554_156335823_156336015_156336876_156337042_156337779_156337885_156338405_156338449_156341506_156341583_156345564_156345784_156347685_156347774_156348270_156348424_156350732_156350831_156351051_156351228_156352655_156352802_156355947_156356131_156368808_156368914_156371309_156371391_156375700_156375788_156376605_156376690_156378899_156378981_156379286_156379404_156381729
transcript_33995.known	chr2	+	3427	4	FSM	ENSMUSG00000027628.11	ENSMUST00000029158.4	3427	4	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_3	2.16024689946929	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACATTCAGTTTTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	156389515	156410892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_156389804_156392568_156393370_156397746_156397977_156408784
transcript_33997.nic	chr2	+	1130	2	ISM	ENSMUSG00000027628.11	ENSMUST00000029158.4	3427	4	-24	17506	-12	401	5prime_fragment	FALSE	canonical	3	138	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGGAAGGGTACTAGTG	NA	False	NA	NA	False	NA	NA	NA	156389491	156393386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_156389804_156392568
transcript_33998.known	chr2	+	2766	5	FSM	ENSMUSG00000027628.11	ENSMUST00000109570.8	2766	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	64.1190299365173	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCCCCCTGTGTGAGTCTC	NA	False	NA	7	True	ATTAAA	-18	NA	156389503	156410076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_156389804_156391804_156391948_156392568_156393370_156397746_156397977_156408784
transcript_34.known	ERCC-00095	+	513	1	FSM	ERCC-00095A	DQ516759	513	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	51	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00095_+_0_500
transcript_34000.known	chr2	+	1595	7	FSM	ENSMUSG00000061689.16	ENSMUST00000109566.9	1595	7	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_1	73.2575365861197	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACTCTAGAACCTTTTCCC	NA	False	NA	NA	False	NA	NA	NA	156562964	156605044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_156563008_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
transcript_34002.nnic	chr2	+	1631	7	NNC	ENSMUSG00000061689.16	novel	4840	13	NA	NA	9318	0	intron_retention	FALSE	canonical	3	40	junction_1	119.417219119448	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAACAGCGTTTCTCACCC	NA	False	NA	11	True	ATTAAA	-14	NA	156572729	156604875	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_156572978_156587754_156588117_156590251_156590341_156590863_156591277_156602770_156602863_156603692_156603849_156604604
transcript_3401.known	chr1	-	3706	18	FSM	ENSMUSG00000026608.14	ENSMUST00000085678.8	3706	18	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_13	20.9446461104513	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGTGTGTCTTCAGTTATT	NA	False	NA	-2	True	ATTAAA	-20	NA	188740037	188703291	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_188704881_188706262_188706402_188706483_188706669_188708807_188708905_188710693_188710850_188713421_188713593_188715206_188715324_188715403_188715492_188719712_188719829_188724759_188724951_188727938_188728030_188728596_188728738_188729158_188729240_188729473_188729533_188732449_188732524_188733539_188733586_188734101_188734156_188739726
transcript_34013.nnic	chr2	-	529	4	NNC	ENSMUSG00000087179.9	novel	388	3	NA	NA	-13	59868	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_1	67.4009561422454	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTGGTCATAGTGTCTT	NA	False	NA	NA	False	NA	NA	NA	156681825	156615100	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_156615230_156679742_156679834_156680337_156680457_156681635
transcript_34014.nnic	chr2	-	1331	4	Fusion	ENSMUSG00000082196.4_ENSMUSG00000087179.9	novel	388	3	NA	NA	5	134	multi-exon	FALSE	canonical	3	10	junction_1	69.7726466620138	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGGTTTTTAATGTCTCT	NA	False	NA	NA	False	NA	NA	NA	156681807	156631597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr2_-_156632366_156679742_156679834_156680337_156680457_156681454
transcript_34021.known	chr2	-	874	4	FSM	ENSMUSG00000087179.9	ENSMUST00000137463.8	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	57.393379409127	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGGAGGGGGACACTGT	NA	False	NA	NA	False	NA	NA	NA	156681740	156674968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_156675347_156679742_156679834_156680337_156680457_156681454
transcript_34022.nic	chr2	-	3028	4	NIC	ENSMUSG00000087179.9	novel	874	4	NA	NA	8	2343	combination_of_known_junctions	FALSE	canonical	3	55	junction_3	55.3915356550279	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTCTTTCGTGTTTCCT	NA	False	NA	1	True	NA	NA	NA	156681732	156672625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_156675347_156679742_156679834_156680337_156680457_156681635
transcript_34024.known	chr2	+	2690	4	FSM	ENSMUSG00000062175.14	ENSMUST00000073352.10	2690	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	80.1373820385967	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156682019	156697490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_156682159_156686075_156686302_156695048_156695149_156695265
transcript_34025.nnic	chr2	+	2718	4	NNC	ENSMUSG00000062175.14	novel	2900	3	NA	NA	251	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	82.8908251188809	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156682270	156697490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_156682438_156686075_156686302_156695048_156695149_156695265
transcript_34028.known	chr2	+	2900	3	FSM	ENSMUSG00000062175.14	ENSMUST00000081335.13	2900	3	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_2	7.5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156681926	156697490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_156682159_156686075_156686302_156695048
transcript_34029.nnic	chr2	+	2835	3	NNC	ENSMUSG00000062175.14	novel	2900	3	NA	NA	251	0	intron_retention	FALSE	canonical	3	30	junction_1	93.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156682270	156697490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_156682438_156686075_156686302_156695048
transcript_34031.nic	chr2	+	2794	3	NIC	ENSMUSG00000062175.14	novel	484	4	NA	NA	-57	0	intron_retention	FALSE	canonical	3	38	junction_1	89.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAATTTTTTGTTGTTTCT	NA	False	NA	NA	False	AATAAA	-35	NA	156682884	156697490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_156683011_156686075_156686302_156695048
transcript_34032.known	chr2	+	1045	4	FSM	ENSMUSG00000027637.4	ENSMUST00000029165.4	1045	4	0	0	0	0	multi-exon	FALSE	canonical	3	1149	junction_1	99.8031395631754	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTGGCATGCCTGGTA	4642	False	NA	14	True	AATAAA	-18	NA	156705047	156715483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_156705338_156707176_156707281_156714257_156714388_156714962
transcript_34033.known	chr2	-	2612	17	FSM	ENSMUSG00000027634.15	ENSMUST00000069600.13	2612	17	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	53.8324948335111	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCTGGTGTTATTT	5927	False	NA	0	True	AATAAA	-22	NA	156833963	156769264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_156770802_156771851_156771891_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833918
transcript_34035.known	chr2	-	2586	16	FSM	ENSMUSG00000027634.15	ENSMUST00000072298.13	2586	16	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	17.2644786258439	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTGCTGGTGTTATTT	5914	False	NA	0	True	AATAAA	-22	NA	156833976	156769264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_156770802_156773135_156773188_156773349_156773386_156776861_156776910_156779246_156779299_156779405_156779472_156780470_156780575_156782276_156782334_156785906_156785994_156786304_156786366_156787936_156788000_156790161_156790283_156791953_156792060_156800386_156800423_156811956_156812059_156833918
transcript_34039.known	chr2	-	2080	11	FSM	ENSMUSG00000027635.16	ENSMUST00000103129.9	2080	11	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_10	28.450131809888	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACACTATGTGACAGTGTGT	8134	False	NA	-6	True	AATAAA	-30	NA	156848995	156837184	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156847794_156848894
transcript_3404.nic	chr1	-	1990	12	ISM	ENSMUSG00000026605.15	ENSMUST00000171929.8	11130	18	-29	19210	-29	-1091	5prime_fragment	FALSE	canonical	3	128	junction_1	16.4859068287717	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAGAAAAATCAGATTTC	NA	False	NA	NA	False	NA	NA	NA	189420312	189392012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_189392270_189394193_189394330_189400712_189400836_189403244_189403374_189404705_189404832_189411135_189411339_189412417_189412704_189414557_189414650_189415041_189415149_189415964_189416162_189417141_189417336_189420172
transcript_34042.known	chr2	-	2636	11	FSM	ENSMUSG00000027635.16	ENSMUST00000103130.8	2636	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_10	60.8885046622103	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTTGAAGTGTACACTAT	8055	False	NA	-18	True	AATAAA	-18	NA	156849074	156837196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_156838202_156838652_156838741_156839526_156839675_156840639_156840718_156841055_156841116_156842753_156842845_156843602_156843676_156844608_156844683_156847087_156847412_156847767_156848283_156848894
transcript_34046.known	chr2	-	2036	17	FSM	ENSMUSG00000027639.17	ENSMUST00000139263.8	2036	17	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	54.3495630157226	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGAATATCTGCGGTTAG	NA	False	NA	-5	True	AGTAAA	-18	NA	156977040	156941320	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_156941424_156943240_156943364_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
transcript_34047.known	chr2	-	3926	16	FSM	ENSMUSG00000027639.17	ENSMUST00000057725.10	3926	16	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	26.3435423248701	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTCTCTCGAGTTACTG	NA	False	NA	-5	True	ATTAAA	-18	NA	156977185	156939452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_156941424_156943640_156943779_156946751_156946857_156948150_156948244_156949348_156949486_156951336_156951453_156952467_156952560_156954719_156954862_156956141_156956243_156958271_156958428_156962401_156962473_156963750_156963867_156965208_156965370_156968691_156968765_156971769_156971837_156976798
transcript_34048.known	chr2	-	4862	22	FSM	ENSMUSG00000027641.14	ENSMUST00000029170.8	4862	22	0	0	0	0	multi-exon	TRUE	canonical	3	54	junction_1	43.0171615808876	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTGTACTTTTTACTGCT	NA	False	NA	NA	False	NA	NA	NA	157046432	156987812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_156989597_156992588_156992754_156994815_156994965_157001579_157001659_157003299_157003372_157005458_157005636_157009154_157009367_157011786_157012051_157016694_157016828_157017447_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
transcript_34049.nic	chr2	-	2321	15	ISM	ENSMUSG00000027641.14	ENSMUST00000154721.8	2715	16	-5	2819	-5	-2819	5prime_fragment	FALSE	canonical	3	55	junction_2	35.4011991034087	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACATGATATAACTCTGTA	NA	False	NA	NA	False	CATAAA	-29	NA	157046459	157011716	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_157012051_157016694_157016828_157017447_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
transcript_34050.known	chr2	-	2383	13	FSM	ENSMUSG00000027641.14	ENSMUST00000124518.2	2383	13	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	21.3559450478992	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGGACTTGTATACATGT	NA	False	NA	-6	True	NA	NA	NA	157046446	157016905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_157017613_157019138_157019277_157029854_157029959_157030142_157030256_157033826_157033994_157034995_157035183_157035931_157035982_157037199_157037361_157037460_157037590_157037679_157037745_157038074_157038276_157041335_157041470_157046219
transcript_34052.nic	chr2	+	2567	18	NIC	ENSMUSG00000027642.16	novel	2756	17	NA	NA	17	1	combination_of_known_junctions	TRUE	canonical	3	59	junction_16	718.681058375563	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTGATGGAGCCTTGCAT	NA	False	NA	18	True	AATAAA	-19	NA	157120953	157167977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157165142_157165191_157167630
transcript_34053.known	chr2	+	2756	17	FSM	ENSMUSG00000027642.16	ENSMUST00000116380.9	2756	17	0	0	0	0	multi-exon	FALSE	canonical	3	1870	junction_1	194.730412606121	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTTCTTCTGTGATAAA	NA	False	NA	20	True	AATAAA	-17	NA	157120978	157168239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_157121256_157125503_157125698_157131447_157131544_157132456_157132633_157136072_157136149_157137173_157137309_157139301_157139479_157141460_157141580_157144325_157144432_157152120_157152213_157154396_157154512_157156697_157156893_157158042_157158130_157159866_157159963_157162040_157162117_157163662_157163793_157167630
transcript_3406.known	chr1	-	1027	1	FSM	ENSMUSG00000026605.15	ENSMUST00000194165.2	1027	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAGGAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	189420283	189419256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_189419300_189420300
transcript_34061.known	chr2	+	1107	3	FSM	ENSMUSG00000063019.6	ENSMUST00000081202.6	1107	3	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	136	415	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGTGTTGCTACTG	5217	False	NA	30	True	AATAAA	-17	NA	157209513	157238683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_157209561_157220968_157221175_157237829
transcript_34063.known	chr2	-	332	1	FSM	ENSMUSG00000081740.4	ENSMUST00000117142.2	332	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACTAATGGAGAGTAAATAA	NA	False	NA	NA	False	NA	NA	NA	157363948	157363616	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_157363600_157363900
transcript_34064.known	chr2	+	1213	3	FSM	ENSMUSG00000067786.17	ENSMUST00000109526.2	1213	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTGTGGCTTCTTTT	9293	False	NA	12	True	NA	NA	NA	157402029	157404442	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_157402181_157403132_157403214_157403461
transcript_34065.known	chr2	-	2056	2	FSM	ENSMUSG00000067787.11	ENSMUST00000109528.9	2056	2	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	0	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGGTTTTATGTGGCT	NA	False	NA	-12	True	AATAAA	-16	NA	157408257	157398281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_157400248_157408167
transcript_34066.known	chr2	+	1135	3	FSM	ENSMUSG00000067786.17	ENSMUST00000173839.2	1135	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGGGGTGCACCAAAAAGT	9299	False	NA	-6	True	NA	NA	NA	157402035	157404424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_157402181_157403132_157403160_157403461
transcript_34067.known	chr2	+	1146	2	FSM	ENSMUSG00000067786.17	ENSMUST00000153739.9	1146	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGGGGGTGCACCAAAAAGT	9261	False	NA	-6	True	NA	NA	NA	157401997	157404424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_157402181_157403461
transcript_34068.known	chr2	-	629	2	FSM	ENSMUSG00000087547.2	ENSMUST00000131365.2	629	2	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	0	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACATCTGGCCAAATATG	8707	False	NA	-13	True	NA	NA	NA	157439240	157437502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_157437906_157439014
transcript_34070.known	chr2	+	2442	16	FSM	ENSMUSG00000027649.16	ENSMUST00000029178.7	2442	16	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_9	43.3601968015214	178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGCTTCTCTAGTCTTGC	NA	False	NA	NA	False	GGGGCT	-25	NA	157579320	157733534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_157579480_157616330_157616520_157621731_157621839_157630911_157631052_157641346_157641445_157648594_157648689_157651384_157651477_157659674_157659748_157659970_157660030_157661373_157661523_157678429_157678612_157710219_157710318_157713027_157713109_157726052_157726191_157726347_157726421_157732824
transcript_34073.known	chr2	-	3830	8	FSM	ENSMUSG00000027650.13	ENSMUST00000029179.11	3830	8	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_3	12.5746749055231	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGATGAGAGATTTATTTCT	NA	False	NA	-8	True	NA	NA	NA	157870353	157823722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_157824381_157834887_157834976_157835273_157835479_157837300_157837442_157838996_157839146_157842539_157842729_157848938_157851279_157870293
transcript_34074.known	chr2	+	4283	7	FSM	ENSMUSG00000027651.17	ENSMUST00000029180.14	4283	7	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_3	20.3749573960018	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGTGTCCCAGCTTTT	NA	False	NA	NA	False	AATAAA	-36	NA	157870640	157920127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889835_157889949_157892006_157892134_157900571_157900748_157916849
transcript_34075.known	chr2	+	4504	7	FSM	ENSMUSG00000027651.17	ENSMUST00000103123.10	4504	7	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_3	28.7807806241133	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTGTGTCCCAGCTTTT	NA	False	NA	NA	False	AATAAA	-36	NA	157870416	157920127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_157870966_157877915_157878046_157885325_157885460_157889838_157889949_157892006_157892134_157900571_157900748_157916849
transcript_34077.known	chr2	-	3596	13	FSM	ENSMUSG00000037820.16	ENSMUST00000103122.10	3596	13	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_8	19.1534374634598	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTCTGCCTTGTCCTTT	8806	False	NA	NA	False	AATAAA	-22	NA	157988356	157958321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_157959872_157960766_157960904_157962044_157962206_157966040_157966311_157969031_157969275_157970558_157970663_157971242_157971379_157973250_157973429_157974348_157974478_157976170_157976290_157980626_157980870_157984914_157985095_157988210
transcript_34081.known	chr2	-	933	6	FSM	ENSMUSG00000085385.8	ENSMUST00000133449.8	933	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	32.8048776861003	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTCAACCCATGAATT	8289	False	NA	3	True	AATAAA	-32	NA	158203500	158197684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_158197962_158199117_158199184_158201101_158201252_158202383_158202520_158202862_158202991_158203324
transcript_34083.nic	chr2	-	984	6	NIC	ENSMUSG00000085385.8	novel	933	6	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_3	23.4059821413245	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCAGTCTGCCTTTTAAA	8319	False	NA	-17	True	AATAAA	-12	NA	158203470	158197704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_158197962_158199117_158199184_158201101_158201353_158202383_158202520_158202862_158202991_158203324
transcript_34085.nic	chr2	-	921	6	NIC	ENSMUSG00000085385.8	novel	1046	7	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	30.9476978142155	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCAGTCTGCCTTTTAAA	8319	False	NA	-17	True	AATAAA	-12	NA	158203470	158197704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_158197962_158199117_158199184_158201101_158201353_158202446_158202520_158202862_158202991_158203324
transcript_34087.known	chr2	-	2007	5	FSM	ENSMUSG00000085385.8	ENSMUST00000154030.8	2007	5	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_4	13.2193040664023	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGTGTCAACCCATGAATT	8347	False	NA	3	True	AATAAA	-32	NA	158203442	158197684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_158197962_158199117_158199184_158201101_158202520_158202862_158202991_158203324
transcript_3409.known	chr1	-	1680	12	FSM	ENSMUSG00000026603.14	ENSMUST00000027897.8	1680	12	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_3	24.6985126865085	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGTTTCTGAATGTCT	NA	False	NA	-6	True	AATAAA	-17	NA	189654560	189612688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_189613064_189614305_189614415_189616020_189616196_189617495_189617617_189618717_189618829_189621011_189621115_189623596_189623665_189628767_189628893_189629619_189629681_189632014_189632126_189642047_189642112_189654303
transcript_34090.known	chr2	+	2266	4	FSM	ENSMUSG00000027654.3	ENSMUST00000029183.3	2266	4	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_3	16.3571255285137	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGATTCTTTTTGTT	406	False	NA	8	True	AATAAA	-16	NA	158610012	158628557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_158610508_158621764_158621933_158625052_158625178_158627079
transcript_34092.nnic	chr2	+	2509	4	NNC	ENSMUSG00000027654.3	novel	2266	4	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_2	130.561181911862	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGATTCTTTTTGTT	377	False	NA	8	True	AATAAA	-16	NA	158609983	158628557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_158610508_158621764_158622147_158625052_158625178_158627079
transcript_34093.known	chr2	+	3284	22	FSM	ENSMUSG00000027655.15	ENSMUST00000109478.9	3284	22	0	0	0	0	multi-exon	TRUE	canonical	3	62	junction_9	12.5862106454921	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTTCTCCTGTCTGTGG	NA	False	NA	28	True	AGTAAA	-19	NA	158636726	158700134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_158636849_158643294_158643429_158648317_158648411_158648842_158648921_158657349_158657455_158659282_158659345_158660181_158660252_158662305_158662366_158668224_158668338_158669822_158669920_158671422_158671582_158673581_158673793_158676789_158676915_158678560_158678616_158682470_158682567_158684224_158684320_158684775_158684854_158685997_158686128_158688827_158688910_158691401_158691474_158693630_158693743_158698999
transcript_34094.nnic	chr2	+	1491	3	NNC	ENSMUSG00000027655.15	novel	3212	21	NA	NA	-1027	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	52	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTTCTCCTGTCTGTGG	NA	False	NA	28	True	AGTAAA	-19	NA	158691521	158700134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_158691766_158693630_158693743_158698999
transcript_34096.known	chr2	+	3856	21	FSM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	0	0	0	0	multi-exon	FALSE	canonical	3	359	junction_7	40.333949719808	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTAGCGTCTGCCTGTTTGT	NA	False	NA	23	True	AATAAA	-21	NA	160487807	160564684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535723_160540043_160540160_160544621_160544744_160545491_160545615_160546702_160546891_160547096_160547242_160554564_160554709_160556000_160556187_160556965_160557035_160557632_160557748_160559306_160559435_160562498_160562594_160562846_160562997_160563371
transcript_34099.nic	chr2	+	1329	11	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	-21	19085	-21	0	5prime_fragment	FALSE	canonical	3	359	junction_7	35.6084259691439	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGGAAGAAAAATTGGTATG	NA	False	NA	NA	False	NA	NA	NA	160487786	160545599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196_160532273_160535615_160535723_160540043_160540160_160544621_160544744_160545491
transcript_3410.known	chr1	-	3995	15	FSM	ENSMUSG00000089872.11	ENSMUST00000061611.15	3995	15	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	6.52154983457904	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGCCTTCCTCATTTAATA	NA	False	NA	0	True	AATAAA	-16	NA	190643967	190505075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_190505901_190514731_190514828_190515760_190515844_190530848_190530939_190531209_190532779_190541079_190541213_190542270_190542319_190566202_190566296_190576683_190576800_190603788_190604149_190617530_190617625_190620845_190620962_190631647_190631769_190637279_190637316_190643752
transcript_34101.nic	chr2	+	731	7	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	90	32446	-2	-3398	5prime_fragment	FALSE	canonical	3	362	junction_4	35.1314990033477	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGGAGAAGAAAAGAAAAT	NA	False	NA	NA	False	TATAAA	-30	NA	160487897	160532238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367_160526424_160529567_160529664_160532196
transcript_34102.nic	chr2	+	673	5	ISM	ENSMUSG00000070544.7	ENSMUST00000109468.3	3856	21	-21	38292	-21	-479	5prime_fragment	FALSE	canonical	3	362	junction_4	42.2670084108161	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAGAAGGAAAAGGAAAAT	NA	False	NA	NA	False	NA	NA	NA	160487786	160526392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_160488183_160488527_160488553_160512019_160512123_160524570_160524695_160526367
transcript_34104.nnic	chr2	-	291	3	Antisense	novelGene_ENSMUSG00000070544.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	2	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGGACTCCCACTTCTA	NA	False	NA	NA	False	TTTAAA	-20	NA	160498194	160492883	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr2_-_160492896_160493075_160493189_160498028
transcript_34106.nic	chr2	-	1498	10	ISM	ENSMUSG00000057133.15	ENSMUST00000138078.8	3092	17	-24	17852	-24	0	5prime_fragment	FALSE	canonical	3	41	junction_1	19.8997487421324	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATGACGTGTATTTGAC	NA	False	NA	NA	False	CATAAA	-15	NA	160951019	160867805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_160867994_160868168_160868256_160871097_160871216_160871822_160871882_160872666_160872730_160881113_160881264_160883904_160884053_160894307_160894826_160901838_160901895_160950908
transcript_34108.nic	chr2	-	1169	7	ISM	ENSMUSG00000057133.15	ENSMUST00000138078.8	3092	17	-24	21805	-24	0	5prime_fragment	FALSE	canonical	3	60	junction_4	13.7931142241337	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAAAGGGTCTTCTATAT	NA	False	NA	NA	False	AATAAA	-17	NA	160951019	160871758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_160871882_160872666_160872730_160881113_160881264_160883904_160884053_160894307_160894826_160901838_160901895_160950908
transcript_34109.nic	chr2	-	732	4	ISM	ENSMUSG00000057133.15	ENSMUST00000125179.2	5051	5	-95	7055	-24	-7055	5prime_fragment	FALSE	canonical	3	60	junction_1	9.7410927974683	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAAACGAAACCACCGTG	NA	False	NA	NA	False	AAGAAA	-8	NA	160951019	160884005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_160884053_160894307_160894826_160901838_160901895_160950908
transcript_34111.nic	chr2	-	1520	2	ISM	ENSMUSG00000057133.15	ENSMUST00000125179.2	5051	5	-95	23535	-24	-23535	5prime_fragment	FALSE	canonical	3	82	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAACAAAACAAAAC	NA	False	NA	NA	False	TTTAAA	-15	NA	160951019	160900485	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_160901895_160950908
transcript_34116.nnic	chr2	+	843	6	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-2	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	23.8830483816451	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232730	162238522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_162232759_162232933_162233118_162233218_162233320_162236359_162236484_162238066_162238330_162238379
transcript_34117.nnic	chr2	+	906	5	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-50	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	28.2621655221252	32	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232682	162238522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_162232958_162233218_162233320_162236359_162236484_162238066_162238330_162238379
transcript_3412.known	chr1	+	3714	9	FSM	ENSMUSG00000026634.17	ENSMUST00000066632.14	3714	9	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	32.0263563334951	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTTGTGGACAGAGAAGTT	NA	False	NA	16	True	AATAAA	-18	NA	190660688	190679159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_190660956_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
transcript_34120.nnic	chr2	+	1066	5	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-50	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	21.2176223927187	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232682	162238522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_162233118_162233218_162233320_162236359_162236484_162238066_162238330_162238379
transcript_34123.nnic	chr2	+	719	5	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-2	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27.4169199583031	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232730	162238522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_162232759_162232933_162233118_162233218_162233320_162238066_162238330_162238379
transcript_34127.nnic	chr2	+	782	4	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-50	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	33.6386021641143	30	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232682	162238522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_162232958_162233218_162233320_162238066_162238330_162238379
transcript_34128.nnic	chr2	+	785	4	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-50	2657	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	33.6386021641143	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232682	162238522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_162232958_162233218_162233320_162238066_162238345_162238391
transcript_34132.nnic	chr2	+	942	4	NNC	ENSMUSG00000084919.2	novel	630	3	NA	NA	-50	2657	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	26.1576417557513	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAGAGTGCCTGTGTTTG	NA	False	NA	11	True	ATTAAA	-22	NA	162232682	162238522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_162233118_162233218_162233320_162238066_162238330_162238379
transcript_34134.known	chr2	+	3527	6	FSM	ENSMUSG00000016921.15	ENSMUST00000130411.7	3527	6	0	0	0	0	multi-exon	FALSE	canonical	3	865	junction_2	49.2097551304617	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTGTTCTTCATTTATTG	NA	False	NA	17	True	AATAAA	-18	NA	162773447	162779041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_162773698_162773913_162774063_162775345_162775471_162775573_162775783_162776147_162776232_162776331
transcript_34140.known	chr2	+	2248	13	FSM	ENSMUSG00000017858.13	ENSMUST00000018002.13	2248	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_1	53.5787971122906	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162859273	162888061	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_162859454_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
transcript_34143.nic	chr2	+	2269	13	NIC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_1	92.6614207148201	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162859375	162888061	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_162859577_162864294_162864420_162865269_162865358_162867250_162867381_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
transcript_34147.nnic	chr2	+	2241	12	NIC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	-123	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_3	106.160567612002	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162859150	162888061	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_162859454_162864294_162864420_162865269_162865358_162867807_162867884_162869950_162870023_162871654_162871782_162873100_162873191_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
transcript_34157.nnic	chr2	+	1384	6	NNC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	9531	-238	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	144.162963343572	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGAACATGATATTGATG	NA	False	NA	18	True	AATAAA	-26	NA	162873893	162887823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_162874156_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
transcript_34158.nnic	chr2	+	1622	6	NNC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	9531	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	144.162963343572	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162873893	162888061	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_162874156_162875154_162875224_162878478_162878634_162882546_162882635_162884610_162884720_162887122
transcript_3416.nic	chr1	+	2344	9	NIC	ENSMUSG00000026634.17	novel	3343	8	NA	NA	8	-1178	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	46.1652940530005	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGGTCAAGT	NA	False	NA	NA	False	NA	NA	NA	190661026	190677981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_190661102_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190674317_190674445_190675026_190675085_190675973_190676138_190677136
transcript_34165.nnic	chr2	+	1467	5	NNC	ENSMUSG00000017858.13	novel	2248	13	NA	NA	9531	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_2	186.483745940497	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTCTGTCATTGATATCCT	NA	False	NA	19	True	ATTAAA	-31	NA	162873893	162888061	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_162874156_162875154_162875224_162882546_162882635_162884610_162884720_162887122
transcript_34170.nnic	chr2	+	2766	14	NNC	ENSMUSG00000017861.12	novel	3651	14	NA	NA	-174	975	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_1	809.068256568618	223	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCCGACTCTGCCCTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	162896432	162925594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_162896724_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
transcript_34172.known	chr2	+	3651	14	FSM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	0	0	0	0	multi-exon	FALSE	canonical	3	2736	junction_8	179.963737307165	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGACTCCTCCTTTTT	NA	False	NA	26	True	NA	NA	NA	162896606	162926608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_162896769_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
transcript_34173.nnic	chr2	+	2562	14	NNC	ENSMUSG00000017861.12	novel	789	7	NA	NA	-178	975	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	819.254105843131	219	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCCGACTCTGCCCTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	162901090	162925594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_162901178_162901420_162901515_162903443_162903516_162904376_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
transcript_34177.nic	chr2	+	2432	11	ISM	ENSMUSG00000017861.12	ENSMUST00000018005.10	3651	14	7647	1014	2985	975	3prime_fragment	FALSE	canonical	3	2736	junction_5	164.584932481683	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCCGACTCTGCCCTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	162904253	162925594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_162904470_162906199_162906421_162910075_162910236_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
transcript_3418.nic	chr1	+	2398	8	NIC	ENSMUSG00000026634.17	novel	3714	9	NA	NA	11	-1178	combination_of_known_junctions	FALSE	canonical	3	16	junction_5	64.6948882944284	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGGTCAAGT	NA	False	NA	NA	False	NA	NA	NA	190660699	190677981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_190660956_190665063_190665390_190669640_190669898_190671283_190671354_190673070_190673493_190675026_190675085_190675973_190676138_190677136
transcript_34182.nnic	chr2	+	1956	9	NNC	ENSMUSG00000017861.12	novel	789	7	NA	NA	1279	975	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	1027.57554466813	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCCCGACTCTGCCCTCTG	NA	False	NA	NA	False	AATAAA	-19	NA	162911410	162925594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_162911532_162914543_162914835_162916301_162916725_162917555_162917696_162919706_162919810_162921513_162921628_162922637_162922743_162924469_162924620_162925085
transcript_34187.known	chr2	-	822	1	FSM	ENSMUSG00000070708.6	ENSMUST00000094653.6	822	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCGGGCTGTGCTGGTTGT	2669	False	NA	-3	True	AATAAA	-17	NA	162929775	162928953	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_162929000_162929800
transcript_34189.known	chr2	-	1620	4	FSM	ENSMUSG00000035399.13	ENSMUST00000046908.10	1620	4	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_1	31.0268700752536	431	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTATTGTGTGTTGTTTCTT	NA	False	NA	-4	True	NA	NA	NA	163261448	163247741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_163249010_163253316_163253431_163257454_163257576_163261331
transcript_34190.known	chr2	+	567	1	FSM	ENSMUSG00000099632.2	ENSMUST00000190930.2	567	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACCAGTCTCTGGCTTTT	NA	False	NA	NA	False	ATTAAA	-24	NA	163261714	163262281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_163261700_163262300
transcript_34191.nnic	chr2	-	1566	3	NNC	ENSMUSG00000048486.7	novel	3967	2	NA	NA	0	-1939	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	29	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTATTAGTTGATGAATG	NA	False	NA	NA	False	AATAAA	-14	NA	163314549	163310237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_163310334_163310795_163312039_163314322
transcript_34192.known	chr2	-	3967	2	FSM	ENSMUSG00000048486.7	ENSMUST00000109418.2	3967	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTCCGGAGTTTGCTGTGT	NA	False	NA	-8	True	ATTAAA	-25	NA	163314549	163308298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_163312039_163314322
transcript_34193.known	chr2	+	1999	5	FSM	ENSMUSG00000017679.17	ENSMUST00000109408.10	1999	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	3.8405728739343	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCACCATCTGGCCCTCCCT	5699	False	NA	NA	False	AATACA	-18	NA	163444241	163458420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_163444335_163449131_163449595_163453678_163453873_163455654_163455766_163457282
transcript_34197.known	chr2	-	3683	10	FSM	ENSMUSG00000017707.10	ENSMUST00000017851.4	3683	10	0	0	0	0	multi-exon	FALSE	canonical	3	366	junction_6	56.7393868903371	523	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGATACCTTAGATTAAT	NA	False	NA	NA	False	AATAAA	-20	NA	163487051	163465191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_163467500_163468172_163468398_163469791_163469973_163471046_163471138_163472845_163473016_163474025_163474164_163476354_163476435_163478730_163478925_163481085_163481248_163486917
transcript_34211.known	chr2	+	1036	4	FSM	ENSMUSG00000035268.15	ENSMUST00000064703.13	1036	4	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_1	29.6348143611905	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTATGATCTTTTCTTT	8603	False	NA	10	True	AATAAA	-20	NA	163500318	163568074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_163500413_163545405_163545476_163563047_163563222_163567376
transcript_34212.known	chr2	+	983	3	FSM	ENSMUSG00000035268.15	ENSMUST00000164399.8	983	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	157.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGATCTTTTCTTTTAAC	8590	False	NA	14	True	AATAAA	-24	NA	163500305	163568078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_163500413_163563047_163563222_163567376
transcript_34213.known	chr2	-	1688	12	FSM	ENSMUSG00000017697.4	ENSMUST00000017841.4	1688	12	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	12.1526108476007	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATATGGGTGTTTTGCCTGCT	NA	False	NA	NA	False	TTTAAA	-20	NA	163592159	163568503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_163568969_163569463_163569564_163570036_163570167_163571931_163571997_163572217_163572320_163572400_163572473_163573024_163573153_163574176_163574293_163574773_163574918_163577268_163577392_163580082_163580145_163591978
transcript_34216.known	chr2	+	3013	6	FSM	ENSMUSG00000018326.10	ENSMUST00000018470.10	3013	6	0	0	0	0	multi-exon	FALSE	canonical	3	1292	junction_3	139.446620611616	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTGTGGATTGATGTG	NA	False	NA	21	True	AATAAA	-16	NA	163836879	163860508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_163837286_163853521_163853825_163855925_163856050_163857150_163857315_163858022_163858119_163858588
transcript_34223.known	chr2	+	750	2	FSM	ENSMUSG00000054582.5	ENSMUST00000126272.2	750	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGCCTGGAAGGAGGG	NA	False	NA	NA	False	ATTAAA	-17	NA	163889306	163892458	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_163889495_163891896
transcript_34224.known	chr2	+	5232	11	FSM	ENSMUSG00000018209.16	ENSMUST00000018353.14	5232	11	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_9	12.953763931769	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGTCCCCTTTCTTCACA	NA	False	NA	18	True	AATAAA	-18	NA	163916057	163997444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_163916168_163921432_163921514_163925549_163925679_163928414_163928530_163930760_163930926_163938658_163938827_163940358_163940497_163941616_163941746_163942329_163942517_163959888_163960047_163993592
transcript_34225.nic	chr2	+	1314	10	ISM	ENSMUSG00000018209.16	ENSMUST00000018353.14	5232	11	-33	37497	-33	-342	5prime_fragment	FALSE	canonical	3	214	junction_9	13.5819415328763	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAGGAAAATCAGATCAA	NA	False	NA	NA	False	NA	NA	NA	163916024	163959947	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_163916168_163921432_163921514_163925549_163925679_163928414_163928530_163930760_163930926_163938658_163938827_163940358_163940497_163941616_163941746_163942329_163942517_163959888
transcript_34226.known	chr2	-	1923	7	FSM	ENSMUSG00000018322.11	ENSMUST00000109384.10	1923	7	0	0	0	0	multi-exon	FALSE	canonical	3	532	junction_3	35.0606617165164	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGCTCTGACGCATTT	5881	False	NA	-5	True	ATTAAA	-16	NA	163913089	163895459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912832
transcript_34227.known	chr2	-	2302	7	FSM	ENSMUSG00000018322.11	ENSMUST00000018466.4	2302	7	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_6	196.655155030322	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGGCTCTGACGCATTT	5948	False	NA	-5	True	ATTAAA	-16	NA	163913022	163895459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_163896428_163896620_163896748_163900585_163900734_163902758_163902929_163906811_163906965_163908489_163908590_163912386
transcript_34228.known	chr2	-	488	3	FSM	ENSMUSG00000051769.3	ENSMUST00000063251.3	488	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	2.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTATGTAATAACTGTTT	NA	False	NA	NA	False	ATTAAA	-38	NA	164042050	164040782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_164040933_164041577_164041737_164041871
transcript_34229.known	chr2	-	2458	5	FSM	ENSMUSG00000017009.4	ENSMUST00000017153.4	2458	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	6.36396103067893	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTCAGTTTTATTTTTG	NA	False	NA	47	True	AATAAA	-24	NA	164285106	164266166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_164268158_164270812_164271009_164271599_164271647_164273106_164273234_164285009
transcript_34233.nic	chr2	+	925	3	ISM	ENSMUSG00000045503.17	ENSMUST00000072452.11	1606	4	295	558	-43	-558	3prime_fragment	FALSE	canonical	3	303	junction_1	8.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGTCTTATGCCCATGA	NA	False	NA	20	True	AATAAA	-14	NA	164303185	164306870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_164303450_164305220_164305289_164306277
transcript_34234.nnic	chr2	+	2511	14	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	-13	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	55.0155437960182	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTTGCTTCCTTCCTAA	5099	False	NA	7	True	AATAAA	-16	NA	164339426	164350221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349454_164349485_164349719_164349750
transcript_34238.nnic	chr2	+	2543	13	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	51.0299476342623	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTTGCTTCCTTCCTAA	5099	False	NA	7	True	AATAAA	-16	NA	164339426	164350221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349454_164349485
transcript_34239.nnic	chr2	+	2351	13	NNC	ENSMUSG00000017721.16	novel	2611	13	NA	NA	-13	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	51.0299476342623	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGTTGCTTCCTTCCTAA	5099	False	NA	7	True	AATAAA	-16	NA	164339426	164350221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397_164344599_164348302_164348469_164348569_164348654_164349194_164349527_164349750
transcript_34243.known	chr2	+	1712	9	FSM	ENSMUSG00000017721.16	ENSMUST00000117066.8	1712	9	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_7	35.1212186576719	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCACTGTTAATCATAAA	5127	False	NA	NA	False	ATTAAA	-24	NA	164339454	164345040	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_164339678_164339785_164339964_164341714_164341843_164342110_164342212_164342351_164342439_164343000_164343089_164343193_164343292_164343404_164343571_164344397
transcript_34245.known	chr2	+	849	5	FSM	ENSMUSG00000017723.12	ENSMUST00000017867.10	849	5	0	0	0	0	multi-exon	FALSE	canonical	3	478	junction_3	30.4251129825347	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	113	False	NA	26	True	AATAAA	-32	NA	164404498	164410430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_164404725_164405227_164405372_164405976_164406133_164407711_164407859_164410254
transcript_3425.known	chr1	+	1585	3	FSM	ENSMUSG00000026634.17	ENSMUST00000137608.8	1585	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	37.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAATTGAAGA	NA	False	NA	NA	False	NA	NA	NA	190660688	190670632	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_190660956_190665063_190665390_190669640
transcript_34250.known	chr2	+	558	4	FSM	ENSMUSG00000017723.12	ENSMUST00000109345.9	558	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	240.807438054189	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	248	False	NA	26	True	AATAAA	-32	NA	164404633	164410430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_164404725_164405227_164405372_164407711_164407859_164410254
transcript_34253.nnic	chr2	+	727	4	NIC	ENSMUSG00000017723.12	novel	849	5	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_1	229.843908386153	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	91	False	NA	26	True	AATAAA	-32	NA	164404476	164410430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_164404725_164405976_164406133_164407711_164407859_164410254
transcript_34256.known	chr2	+	429	3	FSM	ENSMUSG00000017723.12	ENSMUST00000109344.9	429	3	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	240.5	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTGCTTGCCTCACTTTC	233	False	NA	26	True	AATAAA	-32	NA	164404618	164410430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_164404725_164407711_164407859_164410254
transcript_34257.known	chr2	+	459	2	FSM	ENSMUSG00000070529.8	ENSMUST00000094344.6	459	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACACTCTTAATAATCACTG	-7	True	NA	NA	False	AATAAA	-22	NA	164497965	164499288	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_164498119_164498982
transcript_34258.known	chr2	+	443	4	FSM	ENSMUSG00000074593.12	ENSMUST00000103097.10	443	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.65685424949238	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATTTAGAATTCAAAATT	NA	False	NA	NA	False	AATAAA	-16	NA	164557224	164559988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_164557395_164557965_164557975_164558914_164559085_164559894
transcript_34259.nnic	chr2	+	288	3	NNC	ENSMUSG00000074593.12	novel	443	4	NA	NA	1234	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	6	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATTTAGAATTCAAAATT	718	False	NA	NA	False	AATAAA	-16	NA	164558458	164559988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_164558483_164558914_164559085_164559894
transcript_34260.nnic	chr2	+	332	3	NNC	ENSMUSG00000074593.12	novel	443	4	NA	NA	1253	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	2	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATTTAGAATTCAAAATT	737	False	NA	NA	False	AATAAA	-16	NA	164558477	164559988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_164558546_164558914_164559085_164559894
transcript_34261.known	chr2	+	1664	13	FSM	ENSMUSG00000017299.14	ENSMUST00000017443.14	1664	13	0	0	0	0	multi-exon	FALSE	canonical	3	563	junction_10	65.6144039064594	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCCTGTTTTTGTTTCTTT	NA	False	NA	NA	False	NA	NA	NA	164587902	164610527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_164588079_164588626_164588698_164589382_164589480_164596029_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171_164601218_164604988_164605048_164605140_164605202_164607080_164607153_164609626_164609683_164609782
transcript_3427.known	chr1	-	1196	10	FSM	ENSMUSG00000026632.18	ENSMUST00000027945.6	1196	10	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_3	9.99011857466179	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGTATTTTTAAAAAAGGAA	NA	False	NA	-4	True	TATAAA	-16	NA	190795102	190778038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_190778518_190781478_190781557_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
transcript_34270.known	chr2	+	560	5	FSM	ENSMUSG00000017299.14	ENSMUST00000135458.2	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	592	junction_3	38.3699100858993	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTTGTGTTGTGTTCAGT	NA	False	NA	13	True	NA	NA	NA	164596058	164601479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_164596129_164599309_164599379_164599602_164599657_164599920_164599980_164601171
transcript_34272.known	chr2	+	967	6	FSM	ENSMUSG00000001403.14	ENSMUST00000088248.13	967	6	0	0	0	0	multi-exon	FALSE	canonical	3	1606	junction_1	43.6458474542539	1259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTCTCAAGTTACCCT	NA	False	NA	NA	False	AATAAA	-25	NA	164611817	164614827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_164612001_164612286_164612315_164613212_164613300_164613773_164613979_164614086_164614147_164614423
transcript_34279.known	chr2	-	700	6	FSM	ENSMUSG00000017300.10	ENSMUST00000103095.5	700	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	1.16619037896906	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGCTTGACCGACTGATT	NA	False	NA	NA	False	AATAAA	-16	NA	164621661	164619080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_164619254_164619391_164619529_164619650_164619766_164619863_164620008_164620095_164620148_164621582
transcript_3428.known	chr1	-	1242	10	FSM	ENSMUSG00000026632.18	ENSMUST00000110893.10	1242	10	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	11.4309521329882	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAATGATTTGTCTTGGACA	NA	False	NA	12	True	TATAAA	-32	NA	190795129	190778022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_190778518_190781478_190781560_190785056_190785170_190787052_190787109_190787458_190787569_190788559_190788623_190791023_190791109_190792309_190792384_190793421_190793455_190794997
transcript_34286.known	chr2	-	1152	6	FSM	ENSMUSG00000017307.17	ENSMUST00000103094.11	1152	6	0	0	0	0	multi-exon	TRUE	canonical	3	284	junction_4	26.9250812440743	473	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCTGACCTTTAATAGAA	8166	False	NA	-1	True	AATAAA	-19	NA	164646802	164634687	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
transcript_34288.known	chr2	-	1055	6	FSM	ENSMUSG00000017307.17	ENSMUST00000017451.7	1055	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	116.717779279765	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAGCTGACCTTTAATAGAA	8166	False	NA	-1	True	AATAAA	-19	NA	164646802	164634687	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_164634931_164637001_164637100_164637571_164637730_164641639_164641866_164644916_164645054_164646609
transcript_3429.nic	chr1	-	450	5	NIC	ENSMUSG00000026632.18	novel	342	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	15.9216833280907	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGAATGCATTGGTATGCA	NA	False	NA	NA	False	NA	NA	NA	190795129	190790095	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_190790222_190791023_190791109_190792309_190792384_190793421_190793455_190794997
transcript_34292.known	chr2	-	1017	5	FSM	ENSMUSG00000017307.17	ENSMUST00000134611.4	1017	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	121.847240428333	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGACCTTTAATAGAACTA	8167	False	NA	2	True	AATAAA	-22	NA	164646801	164634684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_164634931_164636904_164637100_164637571_164637730_164641639_164641866_164646609
transcript_3430.nnic	chr1	+	2959	7	NNC	ENSMUSG00000062510.13	novel	4879	6	NA	NA	-30	-1916	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	82.1517904045108	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCATTTTTACTGTATTTT	NA	False	NA	16	True	AATAAA	-20	NA	190795178	190816755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190812685_190812754_190814367_190815835_190815887
transcript_34301.known	chr2	+	2590	3	FSM	ENSMUSG00000050373.14	ENSMUST00000056181.7	2590	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	6.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTGTGGAGTCTGGGTT	NA	False	NA	NA	False	TATAAA	-22	NA	164627910	164635730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_164628245_164628617_164628776_164633632
transcript_34303.known	chr2	+	2708	2	FSM	ENSMUSG00000045822.5	ENSMUST00000052107.5	2708	2	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTGTTTTTTGAGACG	3063	False	NA	22	True	AATAAA	-22	NA	164647017	164664050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_164647352_164661676
transcript_34304.known	chr2	+	2705	2	FSM	ENSMUSG00000017764.3	ENSMUST00000017908.3	2705	2	0	0	0	0	multi-exon	FALSE	canonical	3	571	junction_1	0	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTGTCTTGTCTGGTTTA	8527	False	NA	16	True	AATAAA	-19	NA	164664605	164668791	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_164665121_164666601
transcript_34307.nnic	chr2	-	1808	16	NNC	ENSMUSG00000017754.14	novel	1809	16	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_15	91.9865690679291	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTCTCTAGCTCTG	NA	False	NA	-1	True	NA	NA	NA	164699564	164681437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699437
transcript_34309.known	chr2	+	3646	16	FSM	ENSMUSG00000017760.17	ENSMUST00000103092.9	3646	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	263.384096373001	353	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATGGCTCAGTGTGGTGG	NA	False	NA	NA	False	ATTAAA	-11	NA	164674820	164682952	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_164675117_164675643_164675771_164675949_164676129_164676239_164676352_164676617_164676669_164676757_164676845_164677075_164677232_164677549_164677642_164678346_164678432_164678905_164678998_164679101_164679178_164679276_164679417_164679996_164680073_164680560_164680651_164680764_164680870_164681070
transcript_3431.known	chr1	+	4879	6	FSM	ENSMUSG00000062510.13	ENSMUST00000078259.8	4879	6	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_5	16.7164589551735	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAGAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	190795227	190818671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_190795470_190797371_190797451_190802186_190802318_190803374_190803430_190812685_190812754_190814367
transcript_34318.nnic	chr2	-	1594	14	NNC	ENSMUSG00000017754.14	novel	2226	15	NA	NA	207	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_13	100.554910078168	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTCTCTAGCTCTG	NA	False	NA	-1	True	NA	NA	NA	164698509	164681437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698385
transcript_34321.known	chr2	-	1014	2	FSM	ENSMUSG00000039873.5	ENSMUST00000042775.5	1014	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGGAGGGTCTCCTTGC	NA	False	NA	NA	False	AATAAA	-24	NA	164675376	164672651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_164672908_164674618
transcript_34322.known	chr2	-	1809	16	FSM	ENSMUSG00000017754.14	ENSMUST00000059954.14	1809	16	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_15	32.6696597268271	395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTCTCTAGCTCTG	NA	False	NA	-1	True	NA	NA	NA	164699631	164681437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806_164698918_164699503
transcript_34323.known	chr2	-	2226	15	FSM	ENSMUSG00000017754.14	ENSMUST00000109316.8	2226	15	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_14	23.0625812315366	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTTTCTCTAGCTCTG	NA	False	NA	-1	True	NA	NA	NA	164699462	164681437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_164681749_164682033_164682111_164682240_164682305_164682414_164682458_164686354_164686423_164686514_164686680_164688513_164688574_164688659_164688837_164693432_164693525_164694392_164694457_164694536_164694601_164696185_164696342_164696846_164696976_164698623_164698724_164698806
transcript_34324.known	chr2	+	5780	17	FSM	ENSMUSG00000039849.7	ENSMUST00000041643.5	5780	17	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_4	60.7051017213545	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTGGCCACAGACATGAA	5949	False	NA	9	True	AATAAA	-16	NA	164721276	164736374	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_164721410_164724694_164724865_164725996_164726140_164726224_164726350_164727278_164727417_164727595_164727724_164727827_164727983_164728414_164728563_164728643_164728728_164728978_164729079_164730270_164730434_164731013_164731187_164731305_164731393_164731473_164731659_164732334_164732429_164732518_164732695_164732796
transcript_34325.nic	chr2	+	896	4	ISM	ENSMUSG00000039849.7	ENSMUST00000041643.5	5780	17	11	9689	11	71	5prime_fragment	FALSE	canonical	3	207	junction_3	108.249711316012	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTTGAACCTCATTGGG	5960	False	NA	NA	False	NA	NA	NA	164721287	164726685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_164721410_164724694_164724865_164725996_164726140_164726224
transcript_34327.known	chr2	+	611	2	FSM	ENSMUSG00000039849.7	ENSMUST00000145327.2	611	2	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	0	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCAGCACGCAAAGAAAATCT	5896	False	NA	44	True	NA	NA	NA	164721223	164725119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_164721410_164724694
transcript_34328.known	chr2	+	383	2	FSM	ENSMUSG00000039849.7	ENSMUST00000122810.2	383	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCAAATTACCAGGCATCT	6644	False	NA	-45	True	GATAAA	-20	NA	164721971	164725030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_164722019_164724694
transcript_34329.nic	chr2	+	1470	7	ISM	ENSMUSG00000017737.3	ENSMUST00000017881.3	3175	13	2554	722	77	-722	3prime_fragment	FALSE	canonical	1	2	junction_1	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGCTACTTTAGTCAATC	6660	False	NA	NA	False	AATAAA	-19	NA	164792692	164797048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_164792922_164793026_164793183_164794339_164794674_164794774_164794915_164795183_164795335_164795438_164795543_164796692
transcript_34330.known	chr2	-	3179	8	FSM	ENSMUSG00000039804.16	ENSMUST00000040381.15	3179	8	0	0	0	0	multi-exon	TRUE	canonical	3	73	junction_1	19.1790702249582	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGCTAATCTTTCTTGG	2982	False	NA	-6	True	ATTAAA	-15	NA	164876787	164842276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_164844092_164844558_164844880_164846016_164846217_164851242_164851370_164852370_164852508_164854755_164855083_164865065_164865133_164876602
transcript_34331.known	chr2	+	2986	9	FSM	ENSMUSG00000017652.17	ENSMUST00000017799.12	2986	9	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	6.06217782649107	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAACAGAAGATTCATATAA	NA	False	NA	NA	False	NA	NA	NA	164897546	164914868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_164897679_164904205_164904285_164904580_164904707_164904941_164905089_164905387_164905482_164908422_164908485_164911548_164911636_164911736_164911769_164912641
transcript_34338.known	chr2	-	1843	11	FSM	ENSMUSG00000017664.17	ENSMUST00000017808.14	1843	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_9	88.3464204141854	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5702	False	NA	-34	True	AATAAA	-18	NA	165129747	165118473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125328_165125447_165125521_165129703
transcript_34339.nic	chr2	-	1881	11	NIC	ENSMUSG00000017664.17	novel	1843	11	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_9	81.3242891146304	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5667	False	NA	-34	True	AATAAA	-18	NA	165129782	165118473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125328_165125447_165125524_165129703
transcript_3434.nnic	chr1	+	535	3	NNC	ENSMUSG00000062510.13	novel	608	5	NA	NA	-30	-9098	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	120	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTGCTGTGTGGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	190795178	190798305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_190795470_190797371_190797451_190798140
transcript_34343.known	chr2	-	1991	10	FSM	ENSMUSG00000017664.17	ENSMUST00000109298.8	1991	10	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_9	78.2020175926143	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5774	False	NA	-34	True	AATAAA	-18	NA	165129675	165118473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125521_165129603
transcript_34344.known	chr2	-	2008	10	FSM	ENSMUSG00000017664.17	ENSMUST00000109300.9	2008	10	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_9	47.7596864973064	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5660	False	NA	-34	True	AATAAA	-18	NA	165129789	165118473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124854_165125168_165125524_165129703
transcript_34353.known	chr2	-	1892	10	FSM	ENSMUSG00000017664.17	ENSMUST00000132270.8	1892	10	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_8	86.0462121030551	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCCTCTGGAGACTACCA	5705	False	NA	-34	True	AATAAA	-18	NA	165129744	165118473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_165119194_165119371_165119502_165120160_165120337_165122536_165122621_165122705_165122875_165123227_165123301_165124000_165124065_165124702_165124783_165125168_165125524_165129703
transcript_34354.known	chr2	-	3466	21	FSM	ENSMUSG00000017670.17	ENSMUST00000094329.11	3466	21	0	0	0	0	multi-exon	TRUE	canonical	3	269	junction_20	30.5759300757965	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGCTTCCTATCCACACC	NA	False	NA	-17	True	AATAAA	-15	NA	165168399	165131074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_165132482_165134024_165134103_165136160_165136244_165136933_165137042_165137163_165137277_165137382_165137547_165138760_165138898_165139266_165139376_165139460_165139566_165140128_165140264_165140539_165140663_165143860_165143912_165146819_165146899_165150832_165150985_165152094_165152195_165153542_165153725_165156650_165156702_165157523_165157597_165157917_165157959_165158158_165158272_165168337
transcript_3436.known	chr1	+	801	3	FSM	ENSMUSG00000026630.10	ENSMUST00000027943.6	801	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	4.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTTCCTTTGTCCATCT	NA	False	NA	NA	False	AATAAA	-12	NA	190830521	190841140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_190830725_190832924_190833030_190840647
transcript_34360.nnic	chr2	-	2511	13	NNC	ENSMUSG00000039671.19	novel	2484	11	NA	NA	-62	5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	217.463981691988	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGGTTGTGTTTAATTTA	NA	False	NA	38	True	AATAGA	-18	NA	165740998	165669043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_165669638_165669851_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165694787_165694800_165717624_165717696_165740835
transcript_34368.nnic	chr2	-	2294	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	6	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	165.617901376024	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCCTTTGCTCTCTTGTT	NA	False	NA	-24	True	AATAAA	-18	NA	165740930	165669105	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_165669638_165669851_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688085_165693919_165694069_165717624_165717696_165740835
transcript_34372.nnic	chr2	-	2437	12	NNC	ENSMUSG00000039671.19	novel	2515	11	NA	NA	-62	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	167.51247640718	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCCTTTGCTCTCTTGTT	NA	False	NA	-24	True	AATAAA	-18	NA	165740998	165669105	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_165669638_165669851_165670610_165675228_165675345_165676809_165676888_165679200_165679257_165680731_165680820_165681917_165682011_165684683_165684798_165687940_165688160_165693919_165694069_165717624_165717696_165740835
transcript_3438.known	chr1	-	1984	4	FSM	ENSMUSG00000026628.14	ENSMUST00000027941.14	1984	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_2	6.37704215656966	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTAGTGTGGCACTGGTTT	NA	False	NA	0	True	AATAAA	-23	NA	190915537	190902492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_190903877_190904571_190904680_190909427_190909672_190915289
transcript_3439.known	chr1	+	716	2	FSM	ENSMUSG00000073478.7	ENSMUST00000139056.3	716	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATGGATGTGCAAACAT	NA	False	NA	NA	False	AATAAA	-25	NA	190956650	190958032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_190956740_190957405
transcript_34393.nnic	chr2	+	819	3	Antisense	novelGene_ENSMUSG00000039671.19_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	7	junction_2	9	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTGTGTGTGCCTATGTC	NA	False	NA	NA	False	NA	NA	NA	165652161	165659120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr2_+_165652330_165657273_165657453_165658648
transcript_34395.nnic	chr2	-	797	4	NNC	ENSMUSG00000084816.2	novel	830	6	NA	NA	2834	3410	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_3	0.471404520791032	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCCCAATATCAGCGCTTC	3021	False	NA	NA	False	ATTAAA	-18	NA	165825010	165815266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_165815344_165821400_165821678_165822891_165823068_165824743
transcript_34396.known	chr2	-	4580	21	FSM	ENSMUSG00000006800.15	ENSMUST00000109249.9	4580	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	203.951336107416	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGTTCTCAGTGGTGT	NA	False	NA	NA	False	TATAAA	-14	NA	165997583	165915008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_165916739_165917414_165917469_165917691_165917726_165919437_165919562_165920956_165921100_165921379_165921550_165921936_165921997_165922716_165922812_165923206_165923304_165923397_165923627_165924493_165924705_165925775_165925906_165926305_165926363_165927602_165927732_165928905_165929082_165931117_165931269_165935374_165935545_165936397_165936550_165958791_165959032_165974507_165974775_165997422
transcript_34398.known	chr2	+	5757	23	FSM	ENSMUSG00000027678.18	ENSMUST00000109252.8	5757	23	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_19	38.1274504699546	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGCCCACTCATCATTTTA	NA	False	NA	16	True	ATTAAA	-22	NA	165834555	165913390	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_165834679_165876804_165876884_165889375_165889481_165889702_165889876_165890374_165890476_165891985_165892161_165893231_165893418_165893533_165893627_165894274_165894416_165894673_165894822_165896201_165896579_165896690_165897560_165899008_165899139_165900561_165900757_165901083_165901396_165901614_165901742_165902676_165902849_165907677_165907972_165909481_165909566_165910251_165910469_165911124_165911300_165911730_165911873_165912051
transcript_344.known	chr1	-	2938	11	FSM	ENSMUSG00000025935.11	ENSMUST00000027068.11	2938	11	0	0	0	0	multi-exon	FALSE	canonical	3	1226	junction_5	62.5811473208985	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAGTCTATTTTTTGTAA	9656	False	NA	-9	True	ATTAAA	-15	NA	13660134	13634921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_13636621_13639694_13639856_13640162_13640307_13642026_13642132_13642227_13642299_13646591_13646677_13648323_13648383_13649673_13649791_13649913_13650036_13651246_13651311_13659823
transcript_3440.known	chr1	-	742	4	FSM	ENSMUSG00000037499.10	ENSMUST00000046770.10	742	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	10.5303793326209	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTGTGTATGGTTCTTG	NA	False	NA	0	True	AATAAA	-19	NA	191050391	191038985	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_191039287_191042115_191042220_191043656_191043718_191050115
transcript_34403.known	chr2	-	1095	5	FSM	ENSMUSG00000085682.3	ENSMUST00000228863.2	1095	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	16.5755844542508	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAACTCATTCTTGACTTT	NA	False	NA	-6	True	AATAAA	-44	NA	166351094	166341960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_166342691_166344290_166344399_166345246_166345340_166347371_166347507_166351065
transcript_34408.nic	chr2	+	1108	3	ISM	ENSMUSG00000074582.11	ENSMUST00000099078.10	8770	39	85895	2874	63826	-2874	3prime_fragment	FALSE	canonical	3	208	junction_2	13.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAAGTGCGCGGTGTTTTG	NA	False	NA	13	True	AATAAA	-25	NA	166733402	166737098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_166733826_166735420_166735539_166736531
transcript_34409.known	chr2	+	3641	25	FSM	ENSMUSG00000002718.15	ENSMUST00000002790.14	3641	25	0	0	0	0	multi-exon	FALSE	canonical	3	726	junction_12	67.9214722226255	140	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGTTTTTATTGTTTTC	NA	False	NA	37	True	CATAAA	-33	NA	166747978	166788309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_166748098_166757089_166757185_166761532_166761676_166763889_166763992_166764074_166764221_166764673_166764765_166768270_166768379_166769163_166769257_166769362_166769531_166769632_166769763_166770877_166770944_166771704_166771908_166772501_166772587_166774052_166774115_166776672_166776810_166777842_166777947_166779261_166779360_166781554_166781706_166781829_166782039_166783137_166783236_166783326_166783413_166783934_166784017_166784979_166785127_166786296_166786529_166787623
transcript_34419.known	chr2	-	3569	12	FSM	ENSMUSG00000039536.17	ENSMUST00000109235.8	3569	12	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_8	51.6000192196774	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTATTTTCCTTTTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	166838198	166789468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797033_166801942_166802042_166805348_166805515_166806498_166806638_166837953
transcript_3442.known	chr1	+	2246	8	FSM	ENSMUSG00000026627.8	ENSMUST00000027940.6	2246	8	0	0	0	0	multi-exon	TRUE	canonical	3	75	junction_7	21.6248156769306	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCCTGCTACCTTTGTCT	NA	False	NA	6	True	AATAAA	-15	NA	191058108	191083111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_191058274_191060379_191060477_191070978_191071189_191072923_191073076_191077173_191077317_191078956_191079102_191080564_191080673_191081885
transcript_34420.known	chr2	-	2976	12	FSM	ENSMUSG00000039536.17	ENSMUST00000109238.9	2976	12	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_8	58.6274129884562	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGTCTTTTTCCAATT	NA	False	NA	-21	True	AATAAA	-9	NA	166838185	166790066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795272_166796819_166797051_166801942_166802042_166805348_166805515_166806498_166806638_166837953
transcript_34429.known	chr2	-	2860	12	FSM	ENSMUSG00000039536.17	ENSMUST00000109236.9	2860	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	83.3006106552479	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTTTTGTTAATTTATT	NA	False	NA	NA	False	AATAAA	-13	NA	166838219	166790192	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_166791280_166791663_166791750_166792150_166792274_166792700_166793021_166793190_166793267_166794245_166794393_166795127_166795266_166796819_166797033_166801942_166802042_166805348_166805515_166806498_166806638_166837953
transcript_34430.known	chr2	+	2151	8	FSM	ENSMUSG00000017999.17	ENSMUST00000150571.2	2151	8	0	0	0	0	multi-exon	FALSE	canonical	3	722	junction_7	28.1497453499193	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATAGTATTATTTCCCAT	NA	False	NA	NA	False	NA	NA	NA	166857229	166867733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_166857347_166859662_166859810_166861546_166861607_166861799_166861960_166862419_166862464_166862547_166862635_166863967_166864074_166866303
transcript_34432.known	chr2	+	572	5	FSM	ENSMUSG00000074578.15	ENSMUST00000238277.2	572	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	409.357041590834	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905140	166907782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_166905218_166905555_166905648_166907078_166907138_166907232_166907401_166907606
transcript_34433.known	chr2	+	738	5	FSM	ENSMUSG00000074578.15	ENSMUST00000189909.7	738	5	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_1	47.5105251496971	3970	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166904853	166907782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_166905218_166905555_166905648_166907078_166907138_166907353_166907401_166907606
transcript_34435.known	chr2	+	659	4	FSM	ENSMUSG00000074578.15	ENSMUST00000143587.3	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_1	54.8351063543137	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGTCTTGAGTTTC	NA	False	NA	35	True	AATAAA	-45	NA	166905138	166907782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_166905218_166905555_166905648_166907078_166907138_166907353
transcript_34436.known	chr2	+	525	4	FSM	ENSMUSG00000074578.15	ENSMUST00000125841.3	525	4	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_1	54.7783412186483	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCCAGCCCCACAAGGCT	NA	False	NA	NA	False	AATACA	-21	NA	166905142	166907642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_166905218_166905555_166905648_166907078_166907401_166907606
transcript_3444.known	chr1	-	4212	15	FSM	ENSMUSG00000037474.14	ENSMUST00000027933.11	4212	15	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_7	26.7651349516417	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGTGGAAGAGTGTGTT	NA	False	NA	-6	True	NA	NA	NA	191307656	191269476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_191271454_191272815_191273649_191278602_191278736_191280407_191280498_191285099_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300524_191300606_191300669_191301778_191301878_191302690_191302817_191307460
transcript_34443.known	chr2	-	2107	10	FSM	ENSMUSG00000017969.14	ENSMUST00000018113.8	2107	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_8	29.1890390386528	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCGCAGTAGGTAGCAGG	5247	False	NA	NA	False	NA	NA	NA	167082524	167044826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167056727_167056910_167063128_167063281_167065904_167066049_167067195_167067375_167069381_167069506_167082263
transcript_34444.nnic	chr2	-	1644	10	NNC	ENSMUSG00000017969.14	novel	2107	10	NA	NA	-16131	-287	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	30.924439973172	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGCTTCCAAATCGGGC	2922	False	NA	-31	True	AATAAA	-22	NA	167098655	167045113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167056727_167056910_167063128_167063281_167065904_167066049_167067195_167067375_167069381_167069506_167098570
transcript_34447.nic	chr2	-	1149	6	ISM	ENSMUSG00000017969.14	ENSMUST00000018113.8	2107	10	19207	287	-12981	-287	3prime_fragment	FALSE	canonical	3	46	junction_5	14.8404851672713	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGCTTCCAAATCGGGC	NA	False	NA	-31	True	AATAAA	-22	NA	167063317	167045113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167056727_167056910_167063128
transcript_34450.nnic	chr2	-	1016	5	NNC	ENSMUSG00000017969.14	novel	2107	10	NA	NA	-3786	-287	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	31.3876966341909	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGCTTCCAAATCGGGC	8892	False	NA	-31	True	AATAAA	-22	NA	167054122	167045113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_167045389_167048653_167048806_167049101_167049284_167050100_167050270_167053884
transcript_34454.known	chr2	+	4521	17	FSM	ENSMUSG00000039463.15	ENSMUST00000047815.13	4521	17	0	0	0	0	multi-exon	TRUE	non_canonical	2	49	junction_9	20.9574531790005	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTTGTGTCACGTGTT	NA	False	NA	7	True	AATAAA	-20	NA	167263631	167318920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_167263686_167266038_167266218_167276701_167276783_167283048_167283108_167285368_167285453_167287425_167287528_167288421_167288457_167293126_167293271_167299246_167299386_167301568_167301675_167307260_167307378_167309604_167309688_167310883_167310996_167313301_167313523_167315353_167315501_167315947_167316096_167316210
transcript_34459.nnic	chr2	+	409	3	NNC	ENSMUSG00000039463.15	novel	1476	3	NA	NA	-14	2860	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_2	47	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTGGTGTAGAAATAAGTG	NA	False	NA	NA	False	ATTAAA	-13	NA	167263617	167270914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_167263686_167266038_167266218_167270752
transcript_34460.known	chr2	+	2059	2	FSM	ENSMUSG00000039463.15	ENSMUST00000150326.2	2059	2	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAAAAACCCATGAG	NA	False	NA	NA	False	ACTAAA	-7	NA	167263642	167268054	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_167263686_167266038
transcript_34464.known	chr2	+	2502	6	FSM	ENSMUSG00000006418.18	ENSMUST00000078050.7	2502	6	0	0	0	0	multi-exon	FALSE	canonical	3	578	junction_2	31.1088411870323	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCAATGTTTTCATTTAA	NA	False	NA	24	True	AATAAA	-25	NA	167345008	167358093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_167345522_167348966_167349118_167352795_167352903_167353131_167353247_167354436_167354545_167356585
transcript_34466.known	chr2	+	1985	5	FSM	ENSMUSG00000006418.18	ENSMUST00000127939.2	1985	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	262.348051260153	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAGTAAGCTGCAATGTT	NA	False	NA	15	True	AATAAA	-16	NA	167345365	167358084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_167345522_167352795_167352903_167353131_167353247_167354436_167354545_167356585
transcript_34467.known	chr2	+	1621	3	FSM	ENSMUSG00000042821.8	ENSMUST00000052631.8	1621	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	2	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTCAGTGTTGGGGTGGG	4755	False	NA	NA	False	AATAAA	-24	NA	167380114	167384734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_167380292_167380590_167381119_167383818
transcript_34469.known	chr2	-	836	5	FSM	ENSMUSG00000078923.11	ENSMUST00000130284.2	836	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	1151.48477519245	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAAGTTGTGCTGTGTAAC	9446	False	NA	NA	False	NA	NA	NA	167473887	167450854	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167470988_167471209_167473859
transcript_34470.known	chr2	-	924	5	FSM	ENSMUSG00000078923.11	ENSMUST00000151365.8	924	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	1117.10764924424	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTCTGCCTTTGCCCGCCC	9426	False	NA	NA	False	NA	NA	NA	167473907	167450685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167471089_167471209_167473859
transcript_34472.known	chr2	-	2041	4	FSM	ENSMUSG00000078923.11	ENSMUST00000109207.10	2041	4	0	0	0	0	multi-exon	FALSE	canonical	3	2167	junction_3	78.0555357848927	1220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCAGGCTGTGCCCTTCTT	9318	False	NA	NA	False	AATAAA	-19	NA	167474015	167449557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_167451168_167452223_167452350_167459748_167459898_167473859
transcript_34473.known	chr2	-	1586	3	FSM	ENSMUSG00000078923.11	ENSMUST00000060645.13	1586	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	1070	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGGTGGTTTTATTTTAA	9441	False	NA	NA	False	AATAAA	-22	NA	167473892	167449763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_167451168_167459748_167459898_167473859
transcript_34475.known	chr2	+	4292	10	FSM	ENSMUSG00000027540.14	ENSMUST00000126839.8	4292	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	47.9021636666927	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCGTGATGTGCTTGCCT	1105	False	NA	10	True	AATAAA	-16	NA	167774291	167821305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_167774477_167793875_167794000_167805547_167805639_167806929_167807031_167809648_167809748_167813612_167813751_167815979_167816190_167816648_167816811_167817228_167817450_167818344
transcript_34476.known	chr2	+	4213	9	FSM	ENSMUSG00000027540.14	ENSMUST00000029053.8	4213	9	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_4	11.7997616501351	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGCGTGATGTGCTTGCCT	1060	False	NA	10	True	AATAAA	-16	NA	167774246	167821305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_167774477_167805547_167805639_167806929_167807031_167809648_167809748_167813612_167813751_167815979_167816190_167816648_167816811_167817228_167817450_167818344
transcript_34483.known	chr2	-	1309	2	FSM	ENSMUSG00000087648.2	ENSMUST00000129713.2	1309	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACATTAGCTACTTTATT	7129	False	NA	-4	True	NA	NA	NA	167996433	167994522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_167995672_167996273
transcript_34485.known	chr2	-	2293	9	FSM	ENSMUSG00000078919.11	ENSMUST00000154111.8	2293	9	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_3	8.66656650583148	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATAATGTTATCGAATTGT	NA	False	NA	NA	False	ATTAAA	-27	NA	168072299	168050967	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
transcript_34491.known	chr2	-	1076	9	FSM	ENSMUSG00000078919.11	ENSMUST00000109193.8	1076	9	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	149.583118616373	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTGCTTTCATTTAGA	NA	False	NA	-19	True	AATAAA	-23	NA	168072511	168052200	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072308
transcript_34496.known	chr2	-	722	8	FSM	ENSMUSG00000078919.11	ENSMUST00000099072.11	722	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	159.537469209063	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TACCACATAAAAGAAATGAT	NA	False	NA	-40	True	AATGAA	-39	NA	168072248	168052461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_168052557_168053285_168053401_168054879_168054949_168059600_168059697_168061956_168062034_168065040_168065075_168069322_168069423_168072112
transcript_34501.known	chr2	-	435	6	FSM	ENSMUSG00000078919.11	ENSMUST00000142482.8	435	6	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_1	5.93295878967653	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGAGCTTCTCATTAT	NA	False	NA	NA	False	AATAGA	-13	NA	168072150	168059536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_168059697_168061139_168061166_168061956_168062034_168065040_168065075_168069322_168069423_168072112
transcript_34502.known	chr2	-	3729	28	FSM	ENSMUSG00000027546.16	ENSMUST00000109175.9	3729	28	0	0	0	0	multi-exon	TRUE	canonical	3	71	junction_27	47.3339708993171	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGCAGGCTTTTCATTTT	NA	False	NA	-23	True	GATAAA	-16	NA	168576259	168476357	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168575940
transcript_34503.known	chr2	-	3456	28	FSM	ENSMUSG00000027546.16	ENSMUST00000109177.8	3456	28	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_27	57.8025587882503	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGCAGGCTTTTCATTTT	6290	False	NA	-23	True	GATAAA	-16	NA	168584053	168476357	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_168476829_168479420_168479625_168480989_168481048_168481801_168481911_168482550_168482616_168485781_168485938_168489604_168489670_168490474_168490620_168490710_168490801_168491448_168491548_168494487_168494659_168495413_168495498_168496095_168496189_168503848_168504011_168509925_168510139_168515396_168515510_168516711_168516855_168517120_168517282_168518061_168518139_168523895_168523972_168525632_168525714_168529260_168529356_168531218_168531271_168532885_168532945_168547042_168547152_168548114_168548229_168552751_168552897_168584007
transcript_3451.known	chr1	-	4300	11	FSM	ENSMUSG00000037474.14	ENSMUST00000193977.6	4300	11	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	143.039330255703	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	191307625	191281940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_191285213_191288552_191288658_191288895_191289000_191290172_191290247_191293536_191293650_191295222_191295289_191300402_191300517_191300606_191300669_191301778_191301878_191302690_191302817_191307460
transcript_34510.known	chr2	-	5073	4	FSM	ENSMUSG00000027547.18	ENSMUST00000029061.12	5073	4	0	0	0	0	multi-exon	FALSE	canonical	3	532	junction_3	46.1808040928985	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCGGGCTTGTGTGTATGCT	NA	False	NA	-17	True	AATAAA	-22	NA	168609121	168590251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_168592381_168594373_168594661_168596353_168598721_168608831
transcript_34513.known	chr2	-	2438	6	FSM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	0	0	0	0	multi-exon	FALSE	canonical	3	382	junction_1	95.1075181045116	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTGTATTGTATAGTTT	NA	False	NA	0	True	AATAAA	-29	NA	168797192	168767280	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_168768854_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
transcript_34514.known	chr2	-	1009	6	FSM	ENSMUSG00000027551.16	ENSMUST00000109161.3	1009	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	185.215982031789	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTACTGTTGTTACCATT	NA	False	NA	-1	True	TATAAA	-19	NA	168797209	168776732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_168776860_168777130_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
transcript_34515.nic	chr2	-	1902	5	ISM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	-7	8820	-7	632	5prime_fragment	FALSE	canonical	3	472	junction_1	66.5187943366384	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAGTTAGTGCACCTGGA	NA	False	NA	NA	False	NA	NA	NA	168797199	168776100	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
transcript_34516.nic	chr2	-	1289	5	ISM	ENSMUSG00000027551.16	ENSMUST00000087971.11	2438	6	-25	9451	-8	1	5prime_fragment	FALSE	canonical	3	472	junction_1	66.5187943366384	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTGTTGTTACCATTT	NA	False	NA	0	True	TATAAA	-20	NA	168797217	168776731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_168777383_168781890_168781954_168782656_168782819_168793464_168793699_168797038
transcript_34518.known	chr2	-	688	4	FSM	ENSMUSG00000013523.14	ENSMUST00000133673.8	688	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	32.9983164553722	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGTAGATCGAGGTGTA	NA	False	NA	NA	False	AATGAA	-26	NA	170199033	170189864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_170190069_170191101_170191384_170198167_170198234_170198897
transcript_34519.known	chr2	-	594	3	FSM	ENSMUSG00000013523.14	ENSMUST00000156657.8	594	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	33.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTATTATTTACGTCTCT	4201	False	NA	NA	False	AATGAA	-40	NA	170191660	170189850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_170190069_170191101_170191384_170191566
transcript_34520.known	chr2	-	371	3	FSM	ENSMUSG00000013523.14	ENSMUST00000152461.2	371	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	23.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAATCCAAGTAAACAAA	4146	False	NA	NA	False	NA	NA	NA	170191715	170190008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_170190069_170191101_170191384_170191686
transcript_34523.known	chr2	+	935	4	FSM	ENSMUSG00000052033.14	ENSMUST00000063682.12	935	4	0	0	0	0	multi-exon	FALSE	canonical	3	676	junction_1	80.8469060769936	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTAGTATCCGACAGAGAT	3842	False	NA	68	True	AAGAAA	-1	NA	170353154	170361043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_170353390_170357658_170357767_170358469_170358611_170360592
transcript_34524.known	chr2	+	452	4	FSM	ENSMUSG00000052033.14	ENSMUST00000136839.2	452	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	373.855884295302	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATAATTTCCCTTCTCCAAA	4052	False	NA	10	True	AATAAA	-20	NA	170353364	170360782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_170353390_170357658_170357767_170358481_170358611_170360592
transcript_34526.known	chr2	+	666	4	FSM	ENSMUSG00000052033.14	ENSMUST00000170167.8	666	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	391.486341467433	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCGTCCATCCAGCGGGT	4167	False	NA	NA	False	NA	NA	NA	170353479	170360631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_170353858_170357658_170357767_170358469_170358611_170360592
transcript_34527.known	chr2	+	736	4	FSM	ENSMUSG00000052033.14	ENSMUST00000109148.8	736	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	387.259029017472	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTAGTATCCGACAGAGAT	4127	False	NA	68	True	AAGAAA	-1	NA	170353439	170361043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_170353476_170357658_170357767_170358469_170358611_170360592
transcript_34529.nnic	chr2	+	1006	3	NNC	ENSMUSG00000027560.5	novel	1768	8	NA	NA	131721	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	4	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTTAGTTCTTTCTGCAC	NA	False	NA	14	True	AATAAA	-15	NA	170705447	170721689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_170705737_170712730_170712852_170721093
transcript_34530.known	chr2	+	3617	3	FSM	ENSMUSG00000027495.5	ENSMUST00000028995.5	3617	3	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	7.5	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCGGTCTGCCGTCTGGTAA	NA	False	NA	NA	False	AATAAA	-17	NA	172187484	172197669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_172187768_172193374_172193545_172194505
transcript_34535.known	chr2	-	1905	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109139.8	1905	9	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_8	405.788969169937	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGAGTACGTGGGTAATC	NA	False	NA	-8	True	AATATA	-16	NA	172212426	172198115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212314
transcript_34536.known	chr2	-	1862	9	FSM	ENSMUSG00000027496.16	ENSMUST00000109140.10	1862	9	0	0	0	0	multi-exon	FALSE	canonical	3	1025	junction_8	140.198965759381	656	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGTGGGTAATCATTTGA	NA	False	NA	-2	True	AATATA	-22	NA	172212455	172198109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_172198902_172199000_172199176_172201674_172201824_172204694_172204834_172205517_172205710_172206361_172206417_172208841_172209092_172210905_172210953_172212392
transcript_3454.known	chr1	+	5347	20	FSM	ENSMUSG00000037461.11	ENSMUST00000045450.7	5347	20	0	0	0	0	multi-exon	FALSE	canonical	2	189	junction_14	33.0659544051011	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCGTTGAGTGTGAAAGTAA	8193	False	NA	2	True	AATAAA	-12	NA	191307747	191355800	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_191308064_191314510_191314641_191315290_191315438_191318635_191318774_191326538_191326586_191328284_191328485_191328998_191329122_191334356_191334475_191336918_191337054_191338232_191338331_191339931_191340172_191342475_191342614_191343969_191344177_191345126_191345322_191345750_191345855_191346690_191346760_191347812_191347946_191349923_191350023_191351707_191351894_191353276
transcript_34549.nic	chr2	+	1986	6	NIC	ENSMUSG00000027498.15	novel	3451	6	NA	NA	-20	-1367	combination_of_known_junctions	FALSE	canonical	3	132	junction_1	102.721760109531	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCACTGTTCCTCCTTCTT	NA	False	NA	15	True	AATAAA	-15	NA	172212580	172223001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_172212777_172214848_172215050_172217557_172217836_172217971_172218170_172219535_172219927_172222279
transcript_34551.known	chr2	+	3451	6	FSM	ENSMUSG00000027498.15	ENSMUST00000116375.2	3451	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_1	74.6527963307471	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTGACGTAAAGGTAGTTT	NA	False	NA	13	True	AATAAA	-20	NA	172212653	172224368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_172212948_172214848_172215050_172217557_172217836_172217971_172218170_172219535_172219927_172222279
transcript_34552.known	chr2	+	2173	9	FSM	ENSMUSG00000027502.12	ENSMUST00000029005.4	2173	9	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_4	19.7416912902618	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGGGTTGGTTTTGCTT	NA	False	NA	16	True	AATAAA	-16	NA	172282475	172311828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_172282660_172286566_172286662_172287246_172287341_172288541_172288682_172288954_172289034_172305096_172305211_172308193_172308252_172308348_172308445_172310515
transcript_34553.known	chr2	+	944	8	FSM	ENSMUSG00000027502.12	ENSMUST00000109132.10	944	8	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_4	20.1382973562355	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTTACTGTTGTGCAAG	NA	False	NA	NA	False	ATTAAA	-31	NA	172282521	172308574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_172282660_172286566_172286662_172287246_172287341_172288541_172288682_172288954_172289034_172305096_172305211_172308193_172308252_172308348
transcript_34554.known	chr2	-	171	1	FSM	ENSMUSG00000081344.6	ENSMUST00000121320.2	171	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGACCTTGAATGGATTCGA	NA	False	NA	NA	False	NA	NA	NA	172351611	172351440	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_172351400_172351600
transcript_34557.known	chr2	+	2838	7	FSM	ENSMUSG00000028640.12	ENSMUST00000030391.9	2838	7	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_1	51.676611946046	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGTTCTGACCCTTTTT	NA	False	NA	25	True	AATAAA	-27	NA	172391512	172400542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_172391803_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
transcript_34559.nnic	chr2	+	2738	7	NNC	ENSMUSG00000028640.12	novel	2838	7	NA	NA	-19	-2	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_6	217.157904658236	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGTCTGGTTCTGACCC	NA	False	NA	20	True	AATAAA	-22	NA	172391493	172400537	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_172391803_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399124
transcript_3456.known	chr1	+	849	3	FSM	ENSMUSG00000037461.11	ENSMUST00000192681.2	849	3	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	18	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATTAGTCTCTGTTCTGGA	8333	False	NA	NA	False	ATTAAA	-30	NA	191307887	191315833	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_191308064_191314510_191314641_191315290
transcript_34560.known	chr2	+	2776	7	FSM	ENSMUSG00000028640.12	ENSMUST00000170744.2	2776	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	218.277091992927	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTCTGGTTCTGACCCTT	NA	False	NA	22	True	AATAAA	-24	NA	172392910	172400539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_172393142_172393326_172393810_172393915_172393968_172395335_172395553_172395960_172396080_172397984_172398130_172399010
transcript_34562.known	chr2	-	3670	7	FSM	ENSMUSG00000008999.8	ENSMUST00000009143.8	3670	7	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_3	13.8734358477712	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTATTTGTGTCTT	NA	False	NA	1	True	AATAAA	-30	NA	172782114	172709804	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_172712080_172714664_172714776_172717007_172717085_172721118_172721317_172735240_172735390_172758259_172758453_172781447
transcript_34563.nic	chr2	+	1565	12	NIC	ENSMUSG00000027509.12	novel	1742	12	NA	NA	-8	-59	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	326.651961776187	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCCCTTCATCCCTTT	NA	False	NA	26	True	AATAAA	-15	NA	172841901	172857473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_172842044_172844451_172844547_172845299_172845405_172846952_172847046_172848673_172848761_172849852_172849940_172850036_172850109_172851162_172851271_172853792_172853900_172853972_172854049_172854419_172854615_172857075
transcript_34564.known	chr2	+	1742	12	FSM	ENSMUSG00000027509.12	ENSMUST00000029013.10	1742	12	0	0	0	0	multi-exon	FALSE	canonical	3	1013	junction_10	106.078950794457	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATGTTCCAAGTTTCTC	NA	False	NA	85	True	NA	NA	NA	172841909	172857532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_172842170_172844451_172844547_172845299_172845405_172846952_172847046_172848673_172848761_172849852_172849940_172850036_172850109_172851162_172851271_172853792_172853900_172853972_172854049_172854419_172854615_172857075
transcript_34566.known	chr2	+	1768	4	FSM	ENSMUSG00000027510.18	ENSMUST00000029014.16	1768	4	0	0	0	0	multi-exon	FALSE	canonical	3	657	junction_1	63.0766729200793	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAAAGGTGGTTTGAG	NA	False	NA	NA	False	AATAAA	-14	NA	172863694	172876518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_172864064_172864584_172864709_172865119_172865175_172875298
transcript_34567.known	chr2	+	936	4	FSM	ENSMUSG00000027510.18	ENSMUST00000173878.8	936	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	369.719713657071	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTCTTCTGCAGCCCTG	NA	False	NA	NA	False	NA	NA	NA	172863691	172875706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_172864041_172864584_172864709_172865119_172865175_172875298
transcript_34568.known	chr2	+	440	4	FSM	ENSMUSG00000027510.18	ENSMUST00000173997.2	440	4	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_1	361.719351001421	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCTGCCGTGCCCCAAG	NA	False	NA	NA	False	NA	NA	NA	172864230	172875502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_172864288_172864584_172864709_172865119_172865175_172875298
transcript_34569.known	chr2	+	646	4	FSM	ENSMUSG00000027518.4	ENSMUST00000029023.4	646	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTTTGTATGTTTGTTGA	NA	False	NA	NA	False	AATAGA	-17	NA	173364378	173370294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_173364525_173367796_173367879_173369637_173369740_173369978
transcript_3457.nnic	chr1	+	1918	9	NNC	ENSMUSG00000026622.16	novel	3227	8	NA	NA	-32	-20	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	151.790151195656	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATTTTGTGGAAATTTAT	NA	False	NA	9	True	TATAAA	-20	NA	191553589	191565142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261_191559482_191561503_191561630_191563248_191563734_191564988
transcript_34573.nic	chr2	-	909	6	NIC	ENSMUSG00000055897.14	novel	755	6	NA	NA	-18	8	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	5.17687164221791	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTCTTTCTCCTTGATT	NA	False	NA	NA	False	ATTAAA	-17	NA	173501350	173437890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_173438321_173438832_173438981_173450525_173450673_173457275_173457370_173501115_173501161_173501305
transcript_34574.known	chr2	-	755	6	FSM	ENSMUSG00000055897.14	ENSMUST00000142320.8	755	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	7.55248303539968	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAAATTGTCTCTTTCT	NA	False	NA	NA	False	ATTAAA	-9	NA	173501332	173437898	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_173438193_173438832_173438981_173450525_173450673_173457275_173457370_173501115_173501161_173501305
transcript_34576.nic	chr2	-	925	4	NIC	ENSMUSG00000055897.14	novel	755	6	NA	NA	13	8	intron_retention	FALSE	canonical	3	14	junction_1	4.10960933531265	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTCTTTCTCCTTGATT	NA	False	NA	NA	False	ATTAAA	-17	NA	173501315	173437890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_173438321_173438832_173438981_173450525_173450673_173501115
transcript_34578.known	chr2	+	7032	6	FSM	ENSMUSG00000054455.6	ENSMUST00000067530.6	7032	6	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	5.74804314527997	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGATTCCGTGTATAATT	NA	False	NA	NA	False	AATAAA	-25	NA	173579303	173626132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_173579544_173603909_173604063_173613313_173613418_173616186_173616268_173617904_173618082_173619855
transcript_34582.known	chr2	+	3865	9	FSM	ENSMUSG00000027522.16	ENSMUST00000087908.10	3865	9	0	0	0	0	multi-exon	TRUE	canonical	1	10	junction_1	35.0633355515416	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGCATTCCTAGTATTAA	NA	False	NA	126	True	AATAAA	-24	NA	173918714	173941564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_173918983_173926438_173926451_173932413_173932522_173933274_173933416_173934194_173934361_173935226_173935319_173935721_173935866_173936852_173936934_173938711
transcript_34584.known	chr2	+	2467	12	FSM	ENSMUSG00000039263.17	ENSMUST00000044415.16	2467	12	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_9	24.2330284822489	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTACCTGTGATTCCTGG	NA	False	NA	NA	False	CATAAA	-14	NA	173952141	173964863	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_173952366_173952869_173953056_173953406_173953578_173955689_173955780_173956189_173956272_173957843_173957987_173961185_173961264_173962019_173962121_173962336_173962461_173962740_173962918_173963271_173963383_173963883
transcript_34586.known	chr2	+	2465	13	FSM	ENSMUSG00000027523.21	ENSMUST00000109096.9	2465	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	315.710959141779	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	5258	False	NA	15	True	AATAAA	-19	NA	174126112	174188537	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_174126302_174126396_174127271_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
transcript_34587.known	chr2	+	1716	12	FSM	ENSMUSG00000027523.21	ENSMUST00000109087.8	1716	12	0	0	0	0	multi-exon	FALSE	canonical	3	678	junction_2	91.1435159288239	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAATCAATAAAAATTAA	NA	False	NA	-17	True	NA	NA	NA	174171881	174188505	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_174172228_174176004_174176078_174178539_174178585_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
transcript_34589.known	chr2	+	1695	11	FSM	ENSMUSG00000027523.21	ENSMUST00000109084.8	1695	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	245.35078968693	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGTGTTGCTCTTTGATT	NA	False	NA	15	True	AATAAA	-19	NA	174171889	174188537	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_174172228_174176004_174176078_174183445_174183501_174183602_174183723_174184992_174185091_174186867_174186923_174187020_174187095_174187175_174187356_174187441_174187573_174187782_174187851_174188034
transcript_3459.known	chr1	+	3227	8	FSM	ENSMUSG00000026622.16	ENSMUST00000027931.8	3227	8	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_7	41.1061344049071	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTGATGTTTGTATTCT	NA	False	NA	29	True	TATAAA	-40	NA	191553555	191565162	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261_191559482_191561503_191561630_191563248
transcript_34590.known	chr2	-	2248	5	FSM	ENSMUSG00000086537.8	ENSMUST00000151472.8	2248	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.27760839478607	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGAATTGAGTCACTTTTA	NA	False	NA	NA	False	AATAAA	-18	NA	174137229	174123029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_174124296_174125048_174125200_174126252_174126459_174127932_174128191_174136862
transcript_34591.known	chr2	-	1262	5	FSM	ENSMUSG00000086537.8	ENSMUST00000150276.2	1262	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.27760839478607	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGCATTAGCACTGCTC	NA	False	NA	NA	False	ATTAAA	-36	NA	174137182	174123986	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_174124296_174125048_174125218_174126252_174126459_174127932_174128191_174136862
transcript_34593.nnic	chr2	-	1564	4	Antisense	novelGene_ENSMUSG00000027523.21_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	14	junction_1	3.2659863237109	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCATGCCCTCTAGATTG	495	False	NA	NA	False	NA	NA	NA	174169210	174163257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr2_-_174163991_174165456_174165759_174167686_174167944_174168938
transcript_34598.known	chr2	+	2279	15	FSM	ENSMUSG00000016253.13	ENSMUST00000109075.8	2279	15	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_12	51.3083913254758	398	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATATTTTACTCATTTCTT	NA	False	NA	40	True	AATAAA	-21	NA	174257596	174269295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_174257750_174261819_174261939_174262116_174262227_174263502_174263613_174264359_174264468_174264844_174264998_174265168_174265300_174265775_174265942_174266398_174266534_174266906_174267047_174267705_174267821_174268109_174268206_174268281_174268423_174268609_174268740_174268823
transcript_3460.nnic	chr1	+	3152	8	NNC	ENSMUSG00000026622.16	novel	3227	8	NA	NA	-32	-20	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_7	134.022233915397	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTATTTTGTGGAAATTTAT	NA	False	NA	9	True	TATAAA	-20	NA	191553589	191565142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_191553854_191554258_191554477_191554603_191554845_191557594_191557678_191558334_191558462_191559261_191559482_191561503_191561630_191563269
transcript_3461.known	chr1	-	340	2	FSM	ENSMUSG00000097416.4	ENSMUST00000226862.2	340	2	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTCTTAGCACCATTTT	NA	False	NA	NA	False	NA	NA	NA	191722099	191718792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_191718987_191721953
transcript_34616.known	chr2	-	1441	6	FSM	ENSMUSG00000016256.11	ENSMUST00000016400.9	1441	6	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_4	13.5292276202302	524	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTACTTTATTTACA	5329	False	NA	0	True	AGTAAA	-17	NA	174280832	174269285	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_174269776_174270370_174270537_174270848_174271000_174275280_174275461_174279957_174280122_174280542
transcript_34623.known	chr2	-	421	3	FSM	ENSMUSG00000016252.8	ENSMUST00000016396.8	421	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1326.5	1969	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGTTTTGTTTCTGTTCTA	NA	False	NA	-4	True	AATAAA	-22	NA	174305898	174302864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_174303015_174304292_174304423_174305757
transcript_34625.known	chr2	-	1697	2	FSM	ENSMUSG00000016252.8	ENSMUST00000149191.2	1697	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTGGGTTTTGTTTCTGTT	NA	False	NA	-7	True	AATAAA	-19	NA	174305842	174302867	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_174303015_174304292
transcript_3463.known	chr1	-	1844	12	FSM	ENSMUSG00000037395.17	ENSMUST00000192866.6	1844	12	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	6.62077871128477	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTGTACCAGTGCTCATC	NA	False	NA	NA	False	NA	NA	NA	191822359	191785086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_191785456_191785925_191786168_191792943_191793002_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
transcript_34630.known	chr2	-	1553	6	FSM	ENSMUSG00000016257.16	ENSMUST00000016401.15	1553	6	0	0	0	0	multi-exon	FALSE	canonical	3	812	junction_2	54.463198583998	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGAGCAGCTCTTCCCAT	NA	False	NA	-4	True	AATAAA	-45	NA	174314874	174306859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174311129_174311299_174314624
transcript_34635.known	chr2	-	683	5	FSM	ENSMUSG00000016257.16	ENSMUST00000117442.8	683	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	357.55384209934	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTTTGCTGTTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	174314691	174307377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_174307730_174308518_174308622_174308732_174308804_174310090_174310181_174314624
transcript_3464.known	chr1	-	1623	10	FSM	ENSMUSG00000037395.17	ENSMUST00000192491.6	1623	10	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	11.5373788665845	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGGGTTTTTTGTTTCTT	NA	False	NA	NA	False	AATAAA	-20	NA	191822323	191785683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_191786168_191800568_191800647_191804214_191804434_191807838_191807918_191808542_191808668_191810165_191810328_191812275_191812329_191814682_191814761_191821732_191821790_191822035
transcript_34640.nic	chr2	+	497	5	NIC	ENSMUSG00000078906.10	novel	919	4	NA	NA	-56	663	combination_of_known_junctions	FALSE	canonical	3	233	junction_1	354.600743795046	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	174851977	174860068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_174852115_174855220_174855276_174858430_174858558_174858749_174858811_174859951
transcript_34642.nnic	chr2	+	1448	4	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	-5547	457	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	495.211963596286	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174846486	174859862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_174846640_174855220_174855276_174858430_174858558_174858749
transcript_34644.known	chr2	+	919	4	FSM	ENSMUSG00000078906.10	ENSMUST00000109069.8	919	4	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	395.454450249611	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCACATACCTTTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	174852033	174859405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_174852115_174855220_174855276_174858430_174858558_174858749
transcript_34645.nnic	chr2	+	1386	3	NNC	ENSMUSG00000078906.10	novel	919	4	NA	NA	-5540	457	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	600.5	90	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174846493	174859862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_174846640_174858430_174858558_174858749
transcript_34646.nic	chr2	+	1377	3	ISM	ENSMUSG00000078906.10	ENSMUST00000109070.3	1281	4	-134	1179	-56	457	5prime_fragment	FALSE	canonical	3	436	junction_1	382.5	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174851977	174859862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_174852115_174858430_174858558_174858749
transcript_34647.nic	chr2	+	1494	3	ISM	ENSMUSG00000078906.10	ENSMUST00000109069.8	919	4	2988	-457	2910	457	3prime_fragment	FALSE	canonical	3	748	junction_1	226.5	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	NA	False	NA	NA	False	NA	NA	NA	174855021	174859862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_174855276_174858430_174858558_174858749
transcript_34649.known	chr2	-	4516	4	FSM	ENSMUSG00000078902.4	ENSMUST00000109054.3	4516	4	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	16.3571255285137	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	-4	True	NA	NA	NA	175017664	175008047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_175012254_175013387_175013449_175013640_175013768_175017542
transcript_3465.known	chr1	-	2214	11	FSM	ENSMUSG00000026637.15	ENSMUST00000195815.3	2214	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	1.02469507659596	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGCCTGGGGCTCCTCTCT	NA	False	NA	NA	False	NA	NA	NA	191776868	191729167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_191729969_191731758_191731928_191733717_191733859_191738764_191738858_191741554_191741630_191742389_191742468_191743409_191743575_191746941_191747044_191751193_191751252_191754716_191754936_191776555
transcript_34650.nnic	chr2	-	4571	6	NNC	ENSMUSG00000078903.11	novel	1956	6	NA	NA	-14	-1062	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	85.2455277419291	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	175048724	175033919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_175036871_175036954_175038181_175039337_175039399_175039599_175039727_175044851_175044907_175048573
transcript_34651.known	chr2	-	1854	5	FSM	ENSMUSG00000078903.11	ENSMUST00000109058.9	1854	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	82.2936814099357	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTAAAGCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	175048710	175036706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_175038181_175039337_175039399_175039599_175039727_175044851_175044907_175048573
transcript_34653.nic	chr2	-	1539	5	ISM	ENSMUSG00000078903.11	ENSMUST00000109056.8	1956	6	-14	1588	-14	440	5prime_fragment	FALSE	canonical	3	9	junction_3	96.6087470159923	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAGATTGCTCTGTTCAA	NA	False	NA	NA	False	NA	NA	NA	175048724	175038294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_175039399_175039599_175039727_175043445_175043548_175044851_175044907_175048573
transcript_34654.known	chr2	-	965	4	FSM	ENSMUSG00000078903.11	ENSMUST00000109055.2	965	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	81.8141525382715	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCACATACCTTTCACT	NA	False	NA	NA	False	NA	NA	NA	175048692	175038734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_175039399_175039599_175039727_175044851_175044907_175048573
transcript_34659.known	chr2	-	473	5	FSM	ENSMUSG00000078903.11	ENSMUST00000099028.10	473	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	90.9433202604787	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGCAATATTAAAAACTAAT	NA	False	NA	NA	False	NA	NA	NA	175048696	175032857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_175032965_175039337_175039399_175039599_175039727_175044851_175044907_175048573
transcript_34660.known	chr2	+	624	1	FSM	ENSMUSG00000084323.5	ENSMUST00000121572.2	624	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	25	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCACTCGTAGTGTAATA	NA	False	NA	NA	False	NA	NA	NA	175112348	175112972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_175112300_175113000
transcript_34662.known	chr2	-	4402	5	FSM	ENSMUSG00000078899.10	ENSMUST00000121393.9	4402	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	105.8828952192	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	175179990	175163747	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_175167842_175168998_175169060_175169264_175169392_175176415_175176471_175179925
transcript_34663.known	chr2	-	1659	5	FSM	ENSMUSG00000078897.11	ENSMUST00000109045.9	1659	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	104.72911486306	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTAAAGCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	175277600	175264092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_175265399_175266555_175266617_175266821_175266949_175273972_175274028_175277490
transcript_34664.known	chr2	-	1198	4	FSM	ENSMUSG00000078897.11	ENSMUST00000152941.2	1198	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	107.953693776545	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTCTTCCTGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	175277575	175265685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_175266617_175266821_175266949_175273972_175274028_175277490
transcript_3467.known	chr1	-	1819	12	FSM	ENSMUSG00000037375.17	ENSMUST00000128619.8	1819	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	7.07457325757953	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTTGGTCATGGTATC	NA	False	NA	NA	False	NA	NA	NA	192453521	192179018	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_192179157_192235246_192235392_192277194_192277397_192343763_192343800_192376106_192376258_192399264_192399437_192408427_192408662_192409591_192409787_192423817_192423932_192431188_192431257_192441978_192442109_192453287
transcript_3468.nnic	chr1	-	435	3	NNC	ENSMUSG00000016200.15	novel	9274	9	NA	NA	-74	-93445	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	9	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTGTGTCTGGAATCTTA	54	False	NA	NA	False	AATAAA	-42	NA	192718157	192705815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_192705976_192709277_192709326_192717930
transcript_34683.known	chr2	-	624	1	FSM	ENSMUSG00000083481.5	ENSMUST00000118709.2	624	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCACTCGTAGTGTAATA	8779	False	NA	NA	False	NA	NA	NA	175597399	175596775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_175596800_175597400
transcript_34684.known	chr2	+	599	6	FSM	ENSMUSG00000078887.11	ENSMUST00000147820.2	599	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	84.5846321739357	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	175661037	175671684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_175661175_175664841_175664897_175666200_175666303_175670021_175670149_175670349_175670411_175671567
transcript_3469.known	chr1	-	5570	12	FSM	ENSMUSG00000016181.11	ENSMUST00000085555.7	5570	12	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	6.18449140061635	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACACCTGGGGTGTGTGTG	NA	False	NA	NA	False	AAAACA	-7	NA	192812580	192786709	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_192790095_192796064_192796311_192796912_192797026_192797146_192797330_192799808_192800012_192800500_192800721_192802617_192803029_192804313_192804403_192805945_192806117_192810574_192810855_192811798_192811839_192812351
transcript_34690.nic	chr2	+	512	5	NIC	ENSMUSG00000078887.11	novel	599	6	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_4	79.6649232724164	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	175661022	175671684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_175661175_175664841_175664897_175670021_175670149_175670349_175670411_175671567
transcript_34691.known	chr2	+	1445	4	FSM	ENSMUSG00000078887.11	ENSMUST00000109011.8	1445	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	81.1432204329001	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACATTAGATTGCTCTGT	NA	False	NA	NA	False	NA	NA	NA	175661011	175671449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_175661175_175664841_175664897_175670021_175670149_175670349
transcript_34699.known	chr2	+	1621	4	FSM	ENSMUSG00000078886.13	ENSMUST00000109007.8	1621	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	114.545478595476	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGTAACCAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	175757123	175769428	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_175757228_175760682_175760738_175767761_175767889_175768093
transcript_34704.nnic	chr2	-	517	5	NNC	ENSMUSG00000095648.8	novel	1749	4	NA	NA	-3654	1277	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_3	46.0027173110459	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATGTGGTAAGGACTTTA	NA	False	NA	NA	False	NA	NA	NA	175895272	175884815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_175884942_175886096_175886158_175886363_175886491_175891615_175891671_175895124
transcript_34706.nnic	chr2	-	1341	4	NNC	ENSMUSG00000095648.8	novel	195	3	NA	NA	-3654	946	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_2	52.563189485503	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTTCCCATTTCATATA	NA	False	NA	NA	False	NA	NA	NA	175895272	175885146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_175886158_175886363_175886491_175891615_175891671_175895124
transcript_34707.nnic	chr2	-	906	4	NNC	ENSMUSG00000095648.8	novel	195	3	NA	NA	-3654	511	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_2	52.563189485503	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAATTTTCACTTGTTA	NA	False	NA	NA	False	NA	NA	NA	175895272	175885581	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_175886158_175886363_175886491_175891615_175891671_175895124
transcript_34708.known	chr2	+	2314	6	FSM	ENSMUSG00000078894.10	ENSMUST00000136719.2	2314	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	27.5288939116703	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGCTTCTTCGTCATGTT	3039	False	NA	NA	False	NA	NA	NA	175968365	175980514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_175968480_175971917_175971973_175973273_175973376_175977111_175977239_175977443_175977505_175978659
transcript_34709.nnic	chr2	+	450	5	NNC	ENSMUSG00000078894.10	novel	3823	5	NA	NA	-5	-631	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	28.0846933399672	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTATGACTGTAACCAATG	3030	False	NA	NA	False	NA	NA	NA	175968356	175978771	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_175968452_175971917_175971973_175977111_175977239_175977443_175977505_175978659
transcript_3471.known	chr1	-	5504	12	FSM	ENSMUSG00000016181.11	ENSMUST00000195291.6	5504	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	17.8908536584507	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTGCAAAACAAAACTGAAAC	NA	False	NA	NA	False	NA	NA	NA	192812552	192786725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_192790095_192796064_192796289_192796912_192797026_192797146_192797330_192799808_192800012_192800500_192800721_192802617_192803029_192804313_192804403_192805945_192806117_192810574_192810855_192811798_192811839_192812351
transcript_34710.nnic	chr2	+	3800	5	NNC	ENSMUSG00000078894.10	novel	3823	5	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	28.0846933399672	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGGTGGGATAGAC	3030	False	NA	NA	False	AATAAA	-25	NA	175968356	175982121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_175968452_175971917_175971973_175977111_175977239_175977443_175977505_175978659
transcript_34712.known	chr2	+	3823	5	FSM	ENSMUSG00000078894.10	ENSMUST00000099009.9	3823	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	24.8432586429397	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGGTGGGATAGAC	3035	False	NA	NA	False	AATAAA	-25	NA	175968361	175982121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_175968480_175971917_175971973_175977111_175977239_175977443_175977505_175978659
transcript_34716.nic	chr2	+	507	4	ISM	ENSMUSG00000078894.10	ENSMUST00000099009.9	3823	5	0	4471	0	142	5prime_fragment	FALSE	canonical	3	13	junction_2	10.9848380355227	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTATGTATGTAATTATTG	3035	False	NA	NA	False	NA	NA	NA	175968361	175977650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_175968480_175971917_175971973_175977111_175977239_175977443
transcript_34717.known	chr2	+	1127	3	FSM	ENSMUSG00000089951.9	ENSMUST00000127687.8	1127	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	45	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGAGTTCTTCCTGTTTT	NA	False	NA	NA	False	NA	NA	NA	176115453	176124879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_176115528_176123621_176123749_176123953
transcript_34719.known	chr2	-	1458	4	FSM	ENSMUSG00000078881.11	ENSMUST00000120959.8	1458	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	108.739239569818	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATCAGTGTAAGAAAGAT	NA	False	NA	NA	False	NA	NA	NA	176178566	176166422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_176167595_176167799_176167927_176174950_176175006_176178462
transcript_34722.known	chr2	-	1628	5	FSM	ENSMUSG00000078880.11	ENSMUST00000108990.9	1628	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	103.562481140614	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTAAAGCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	176328111	176314634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_176315941_176317097_176317159_176317363_176317491_176324514_176324570_176328032
transcript_34723.known	chr2	-	1458	4	FSM	ENSMUSG00000078880.11	ENSMUST00000119149.8	1458	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	105.749179140497	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAATCAGTGTAAGAAAGAT	NA	False	NA	NA	False	NA	NA	NA	176328136	176315986	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_176317159_176317363_176317491_176324514_176324570_176328032
transcript_34725.known	chr2	+	1646	5	FSM	ENSMUSG00000078878.10	ENSMUST00000108981.9	1646	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	64.6006965906715	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTAAAGCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	176400120	176413606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_176400218_176403673_176403729_176410749_176410877_176411081_176411143_176412300
transcript_34727.known	chr2	+	1167	4	FSM	ENSMUSG00000078878.10	ENSMUST00000108980.9	1167	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	71.7696933871734	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGTGCAAACACTGTGA	NA	False	NA	NA	False	NA	NA	NA	176400147	176411996	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_176400218_176403673_176403729_176410749_176410877_176411081
transcript_3473.known	chr1	+	4113	8	FSM	ENSMUSG00000026638.16	ENSMUST00000076521.7	4113	8	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	3.81190401832181	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATATAAAGCTAGAG	NA	False	NA	NA	False	AATAAA	-10	NA	192835418	192854331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_192835608_192839523_192839701_192843920_192844126_192844909_192845039_192848073_192848233_192849746_192850140_192850824_192850944_192851589
transcript_34730.known	chr2	+	1271	3	FSM	ENSMUSG00000078879.11	ENSMUST00000121956.8	1271	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	40	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGTTCCCATTTCATT	NA	False	NA	NA	False	NA	NA	NA	176362314	176371667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_176362453_176370328_176370456_176370661
transcript_34731.nic	chr2	+	499	5	NIC	ENSMUSG00000078877.12	novel	1213	4	NA	NA	-37	403	combination_of_known_junctions	FALSE	canonical	3	47	junction_2	16.6038399173203	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	176490367	176500814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_176490512_176493973_176494029_176499154_176499282_176499487_176499549_176500702
transcript_34732.known	chr2	+	1213	4	FSM	ENSMUSG00000078877.12	ENSMUST00000118012.9	1213	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	11.7284080571728	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGTGAGTTCTTCCTGT	NA	False	NA	NA	False	NA	NA	NA	176490404	176500411	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_176490512_176493973_176494029_176499154_176499282_176499487
transcript_34738.known	chr2	-	2314	6	FSM	ENSMUSG00000074527.12	ENSMUST00000125090.8	2314	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	32.7878026101171	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGCTTCTTCGTCATGTT	NA	False	NA	NA	False	NA	NA	NA	176619598	176607449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_176609305_176610459_176610521_176610725_176610853_176614588_176614691_176615991_176616047_176619484
transcript_34739.known	chr2	-	3823	5	FSM	ENSMUSG00000074527.12	ENSMUST00000099007.3	3823	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	30.886890422961	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGGTGGGATAGAC	NA	False	NA	NA	False	AATAAA	-25	NA	176619602	176605842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_176609305_176610459_176610521_176610725_176610853_176615991_176616047_176619484
transcript_34740.nnic	chr2	-	3795	5	NNC	ENSMUSG00000074527.12	novel	3823	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_4	34.8093019177346	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGGTGGGATAGAC	NA	False	NA	NA	False	AATAAA	-25	NA	176619602	176605842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_176609305_176610459_176610521_176610725_176610853_176615991_176616047_176619512
transcript_34746.nnic	chr2	-	484	4	NNC	ENSMUSG00000074527.12	novel	3823	5	NA	NA	0	-974	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_3	13.5728487143349	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGTAATTATTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	176619602	176610308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_176610521_176610725_176610853_176615991_176616047_176619512
transcript_3475.known	chr1	+	2257	2	FSM	ENSMUSG00000079144.8	ENSMUST00000110831.4	2257	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTCCTGAAATCATTTG	961	False	NA	NA	False	AATAAA	-17	NA	192855887	192858608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_192856089_192856552
transcript_34752.known	chr2	+	752	4	FSM	ENSMUSG00000078875.11	ENSMUST00000156844.8	752	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	49.7482551341139	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAATGGTTTTGTGGAAA	NA	False	NA	NA	False	NA	NA	NA	176692769	176702306	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_176692840_176696293_176696349_176701473_176701601_176701806
transcript_34756.nnic	chr2	+	444	4	Fusion	ENSMUSG00000078875.11_ENSMUSG00000078872.10	novel	752	4	NA	NA	-53	33911	multi-exon	FALSE	canonical	2	13	junction_1	21.6384431561566	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATGACTGTAATTCCTC	NA	False	NA	NA	False	NA	NA	NA	176692695	176813051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr2_+_176692840_176701473_176701601_176776368_176776430_176812939
transcript_3476.known	chr1	+	1240	1	FSM	ENSMUSG00000026639.19	ENSMUST00000194407.2	1240	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAAAAAAAAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	192890006	192891246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_192890000_192891200
transcript_34760.nnic	chr2	+	466	5	NNC	ENSMUSG00000078872.10	novel	973	4	NA	NA	-74	33911	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	52.578512721453	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATGACTGTAATTCCTC	NA	False	NA	NA	False	NA	NA	NA	176766038	176813051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_176766152_176772059_176772113_176776035_176776163_176776368_176776430_176812939
transcript_34761.nnic	chr2	+	463	4	NNC	ENSMUSG00000078872.10	novel	948	4	NA	NA	-124	33911	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	117.565111982916	68	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCATGACTGTAATTCCTC	NA	False	NA	NA	False	NA	NA	NA	176765988	176813051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_176766152_176776035_176776163_176776368_176776430_176812939
transcript_34764.nnic	chr2	-	500	6	NNC	ENSMUSG00000078870.10	novel	1113	4	NA	NA	-71448	682	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	123.980643650531	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	176969662	176885959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_176886072_176887228_176887290_176887494_176887622_176894619_176894675_176937155_176937189_176969550
transcript_34765.nic	chr2	-	506	5	NIC	ENSMUSG00000078870.10	novel	912	4	NA	NA	-69	682	combination_of_known_junctions	FALSE	canonical	2	8	junction_1	120.131958695428	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	176898283	176885959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_176886072_176887228_176887290_176887494_176887622_176894619_176894675_176898132
transcript_34767.nnic	chr2	-	1339	5	NNC	ENSMUSG00000078870.10	novel	912	4	NA	NA	-71448	364	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	131.577923680228	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTTCCCATTTCATATA	NA	False	NA	NA	False	NA	NA	NA	176969662	176886277	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_176887290_176887494_176887622_176894619_176894675_176937155_176937189_176969550
transcript_34769.nnic	chr2	-	540	5	NNC	ENSMUSG00000078870.10	novel	912	4	NA	NA	-71448	-435	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	131.577923680228	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATGTAACTGTTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	176969662	176887076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_176887290_176887494_176887622_176894619_176894675_176937155_176937189_176969550
transcript_34770.known	chr2	-	912	4	FSM	ENSMUSG00000078870.10	ENSMUST00000108964.2	912	4	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_3	114.822568435923	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTGGGGCATTGAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	176898214	176886641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_176887290_176887494_176887622_176894619_176894675_176898132
transcript_34771.nnic	chr2	-	1449	4	NNC	ENSMUSG00000078870.10	novel	912	4	NA	NA	-71465	456	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	137.950071483208	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTAGATTGCTCTGTTCAA	NA	False	NA	NA	False	NA	NA	NA	176969679	176886185	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_176887290_176887494_176887622_176894619_176894675_176969516
transcript_34779.nnic	chr2	-	1313	7	Fusion	ENSMUSG00000083817.2_ENSMUSG00000078867.10	novel	2135	3	NA	NA	-20	30890	multi-exon	TRUE	non_canonical	0	0	junction_1	121.865590804879	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGTGCAAACACTGTGA	NA	False	NA	NA	False	NA	NA	NA	177090133	176886375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr2_-_176886383_176919522_176920428_176920629_176920757_176925417_176925431_177085099_177085189_177086489_177086545_177090016
transcript_3478.known	chr1	-	1623	6	FSM	ENSMUSG00000016194.15	ENSMUST00000016338.15	1623	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.01980390271856	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTCTCGCATTCATTT	NA	False	NA	NA	False	NA	NA	NA	192924937	192903941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_192904537_192905929_192906074_192922538_192922725_192922834_192922947_192923639_192923771_192924482
transcript_34784.nnic	chr2	-	490	5	Fusion	ENSMUSG00000078868.4_ENSMUSG00000078869.3	novel	1050	3	NA	NA	-135	-843	multi-exon	FALSE	canonical	0	0	junction_3	219.014268941546	105	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCATGACTGTAACCAATG	NA	False	NA	-38	True	NA	NA	NA	177016235	176957289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr2_-_176957402_176958542_176958604_176958795_176958923_177012912_177012965_177016097
transcript_34786.nnic	chr2	-	363	4	Fusion	ENSMUSG00000078868.4_ENSMUSG00000078869.3	novel	1050	3	NA	NA	-135	-843	multi-exon	FALSE	canonical	0	0	junction_2	206.259275885689	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCATGACTGTAACCAATG	NA	False	NA	-38	True	NA	NA	NA	177016235	176957289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr2_-_176957402_176958542_176958604_177012912_177012965_177016097
transcript_34787.nnic	chr2	-	1368	4	Fusion	ENSMUSG00000078868.4_ENSMUSG00000078869.3	novel	1050	3	NA	NA	-57	-1028	multi-exon	FALSE	canonical	0	0	junction_2	229.762679495363	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCATACAGATAAAAAGACT	NA	False	NA	-26	True	NA	NA	NA	177016157	176957474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr2_-_176958604_176958795_176958923_177012912_177012965_177016097
transcript_34788.nnic	chr2	-	1417	3	NNC	ENSMUSG00000078869.3	novel	1050	3	NA	NA	-5378	-1028	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_2	147.5	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCATACAGATAAAAAGACT	NA	False	NA	-26	True	NA	NA	NA	176964207	176957474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_176958604_176958795_176958923_176964046
transcript_34789.known	chr2	-	588	7	FSM	ENSMUSG00000078867.10	ENSMUST00000149689.2	588	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	128.500324253806	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	177090113	177079693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_177079803_177080953_177081015_177081219_177081347_177081614_177081652_177085086_177085189_177086489_177086545_177090016
transcript_3479.nnic	chr1	-	1068	3	NNC	ENSMUSG00000009633.4	novel	871	2	NA	NA	-680	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_2	38.5	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCATTATTTAATTCTTG	NA	False	NA	-1	True	AATAAA	-16	NA	192956205	192954468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_192955111_192955296_192955492_192955974
transcript_34790.nnic	chr2	-	539	6	NIC	ENSMUSG00000078867.10	novel	588	7	NA	NA	-53	0	combination_of_known_splicesites	FALSE	canonical	3	51	junction_2	99.4633600880244	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	177090166	177079693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_177079803_177080953_177081015_177081219_177081347_177081614_177081652_177086489_177086545_177090016
transcript_34795.nic	chr2	-	502	5	NIC	ENSMUSG00000078867.10	novel	588	7	NA	NA	-53	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_3	128.388083559184	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACACCATGACTGTAACCA	NA	False	NA	NA	False	NA	NA	NA	177090166	177079693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_177079803_177080953_177081015_177081219_177081347_177086489_177086545_177090016
transcript_34796.nnic	chr2	-	1506	5	NIC	ENSMUSG00000078867.10	novel	588	7	NA	NA	-53	0	combination_of_known_splicesites	FALSE	canonical	3	51	junction_1	110.628601636286	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTCATATAGATAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	177090166	177079877	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_177081015_177081219_177081347_177081614_177081652_177086489_177086545_177090016
transcript_34797.nnic	chr2	-	1571	5	NIC	ENSMUSG00000078867.10	novel	588	7	NA	NA	-53	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_2	135.257162472085	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTCATATAGATAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	177090166	177079877	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_177081015_177081219_177081347_177085086_177085189_177086489_177086545_177090016
transcript_34798.nnic	chr2	-	1375	5	NIC	ENSMUSG00000078867.10	novel	588	7	NA	NA	-53	-131	combination_of_known_splicesites	FALSE	canonical	3	51	junction_1	110.628601636286	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTTCCCATTTCATGT	NA	False	NA	NA	False	NA	NA	NA	177090166	177080008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_177081015_177081219_177081347_177081614_177081652_177086489_177086545_177090016
transcript_3480.known	chr1	-	871	2	FSM	ENSMUSG00000009633.4	ENSMUST00000009777.4	871	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTCATTATTTAATTCTTG	NA	False	NA	-1	True	AATAAA	-16	NA	192955525	192954468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_192955111_192955296
transcript_34802.known	chr2	-	1415	4	FSM	ENSMUSG00000078867.10	ENSMUST00000108955.2	1415	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	139.800651723167	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATTCATATAGATAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	177090112	177079877	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_177081015_177081219_177081347_177086489_177086545_177090016
transcript_3481.known	chr1	+	2454	8	FSM	ENSMUSG00000016494.10	ENSMUST00000016638.8	2454	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.35526185435788	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATGTGGCCCTATAATG	1021	False	NA	NA	False	AATAAA	-43	NA	194621126	194643587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_194621353_194630146_194630315_194631612_194631873_194633246_194633328_194640724_194640882_194641117_194641171_194641373_194641539_194642243
transcript_34823.nic	chr2	+	506	5	NIC	ENSMUSG00000094786.2	novel	701	4	NA	NA	-48	-304	combination_of_known_junctions	FALSE	canonical	3	153	junction_2	35.4436171968946	79	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	17	True	NA	NA	NA	177189959	177200358	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035_177199097_177200246
transcript_34830.nic	chr2	+	539	4	NIC	ENSMUSG00000094786.2	novel	701	4	NA	NA	-48	-1421	combination_of_known_junctions	FALSE	canonical	3	153	junction_2	39.4208066888541	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGGCAGATATGTAATTAT	NA	False	NA	NA	False	NA	NA	NA	177189959	177199241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035
transcript_34831.nic	chr2	+	908	4	NIC	ENSMUSG00000094786.2	novel	701	4	NA	NA	-48	-1052	combination_of_known_junctions	FALSE	canonical	3	153	junction_2	39.4208066888541	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGAATTTTCACTTGTTA	NA	False	NA	NA	False	NA	NA	NA	177189959	177199610	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035
transcript_34832.nic	chr2	+	1253	4	NIC	ENSMUSG00000094786.2	novel	701	4	NA	NA	-48	-707	combination_of_known_junctions	FALSE	canonical	3	153	junction_2	39.4208066888541	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGTGAGTTCGTCCTGT	NA	False	NA	NA	False	NA	NA	NA	177189959	177199955	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035
transcript_34834.nic	chr2	+	1437	4	NIC	ENSMUSG00000094786.2	novel	701	4	NA	NA	-48	-523	combination_of_known_junctions	FALSE	canonical	3	153	junction_2	39.4208066888541	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATTGCTATGTTCAATGAAA	NA	False	NA	NA	False	NA	NA	NA	177189959	177200139	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035
transcript_34835.nic	chr2	+	1488	4	NIC	ENSMUSG00000094786.2	novel	701	4	NA	NA	-48	-472	combination_of_known_junctions	FALSE	canonical	3	153	junction_2	39.4208066888541	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACTCATCGGTATAATCAAC	NA	False	NA	NA	False	NA	NA	NA	177189959	177200190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_177190111_177193535_177193591_177198701_177198829_177199035
transcript_34841.nic	chr2	-	655	5	NIC	ENSMUSG00000078865.9	novel	1348	4	NA	NA	-219	-978	combination_of_known_junctions	FALSE	canonical	3	253	junction_4	344.203700590217	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	2118	False	NA	NA	False	NA	NA	NA	177270222	177261974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_177262087_177263226_177263288_177263479_177263607_177266761_177266817_177269922
transcript_34845.known	chr2	-	531	4	FSM	ENSMUSG00000078865.9	ENSMUST00000108943.2	531	4	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_3	396.148400925153	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTAACAGATATGTTACTG	2337	False	NA	NA	False	NA	NA	NA	177270003	177263019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_177263288_177263479_177263607_177266761_177266817_177269922
transcript_34847.nic	chr2	-	1371	3	ISM	ENSMUSG00000078865.9	ENSMUST00000108945.8	1348	4	-62	1179	-51	844	5prime_fragment	FALSE	canonical	3	827	junction_2	197.5	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAATTTTAAAAGAATTCA	2286	False	NA	NA	False	NA	NA	NA	177270054	177262175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_-_177263288_177263479_177263607_177269922
transcript_34855.nnic	chr2	+	594	6	NNC	ENSMUSG00000078864.11	novel	744	6	NA	NA	-49	-264	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_3	118.732640836461	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177401031	177411491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_177401169_177404638_177404694_177405994_177406097_177409836_177409964_177410168_177410230_177411379
transcript_34857.known	chr2	+	744	6	FSM	ENSMUSG00000078864.11	ENSMUST00000148388.2	744	6	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	86.0497530501977	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCAATGTGGTAAAGCCTT	NA	False	NA	NA	False	NA	NA	NA	177401080	177411755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_177401169_177404638_177404694_177409531_177409569_177409836_177409964_177410168_177410230_177411379
transcript_34859.nnic	chr2	+	472	5	Fusion	ENSMUSG00000078864.11_ENSMUSG00000094786.2	novel	1077	4	NA	NA	-14	-264	multi-exon	FALSE	canonical	3	49	junction_2	85.9200209497181	39	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177189993	177411491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr2_+_177190111_177404638_177404694_177409836_177409964_177410168_177410230_177411379
transcript_3486.known	chr1	-	1651	10	FSM	ENSMUSG00000016481.16	ENSMUST00000075451.12	1651	10	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_9	54.0893179933677	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTGTGGTTCATACTT	NA	False	NA	-1	True	AATAAA	-19	NA	194813869	194786097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813495
transcript_34864.nic	chr2	+	1474	5	ISM	ENSMUSG00000078864.11	ENSMUST00000148388.2	744	6	-29	449	-29	-449	5prime_fragment	FALSE	canonical	3	97	junction_4	94.7137133682341	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCATATAGATAAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	177401051	177411306	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_177401169_177404638_177404694_177409531_177409569_177409836_177409964_177410168
transcript_34865.nic	chr2	+	498	5	NIC	ENSMUSG00000078864.11	novel	744	6	NA	NA	-55	-264	combination_of_known_junctions	FALSE	canonical	3	49	junction_2	122.051218756717	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177401025	177411491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_177401169_177404638_177404694_177409836_177409964_177410168_177410230_177411379
transcript_34867.nnic	chr2	+	448	4	Fusion	ENSMUSG00000078864.11_ENSMUSG00000094786.2	novel	1074	3	NA	NA	-45	-264	multi-exon	FALSE	canonical	3	66	junction_1	90.6899479913108	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177189962	177411491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr2_+_177190111_177409836_177409964_177410168_177410230_177411379
transcript_3487.nnic	chr1	-	1476	10	NNC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	76.5724058217667	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTGTGGTTCATACTT	NA	False	NA	-1	True	AATAAA	-19	NA	194813871	194786097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813672
transcript_34870.nnic	chr2	+	702	4	NIC	ENSMUSG00000078864.11	novel	744	6	NA	NA	-314	-264	combination_of_known_splicesites	FALSE	canonical	3	35	junction_1	100.353818506766	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGACTGTAACCAATG	NA	False	NA	NA	False	NA	NA	NA	177400766	177411491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_177401169_177409836_177409964_177410168_177410230_177411379
transcript_34871.nnic	chr2	+	1413	3	Fusion	ENSMUSG00000078864.11_ENSMUSG00000094786.2	novel	1074	3	NA	NA	-45	-449	multi-exon	FALSE	canonical	3	66	junction_1	15.5	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCATATAGATAAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	177189962	177411306	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr2_+_177190111_177409836_177409964_177410168
transcript_34873.known	chr2	-	310	3	FSM	ENSMUSG00000095362.8	ENSMUST00000150650.2	310	3	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	213.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGAAAAAATTCCTATGAAGA	NA	False	NA	NA	False	NA	NA	NA	177482129	177476021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_177476105_177476312_177476440_177482029
transcript_34877.nnic	chr2	+	1436	5	Fusion	ENSMUSG00000078864.11_ENSMUSG00000074521.10	novel	744	6	NA	NA	-55	-157	multi-exon	FALSE	canonical	2	8	junction_3	136.696744657655	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTTCTCATTTCATGTA	NA	False	NA	NA	False	NA	NA	NA	177401025	177547420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr2_+_177401169_177404638_177404694_177405994_177406097_177546077_177546205_177546411
transcript_34878.known	chr2	+	1451	3	FSM	ENSMUSG00000074521.10	ENSMUST00000108935.8	1451	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	14.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATAATCAATGCGAGAACA	NA	False	NA	NA	False	NA	NA	NA	177538888	177547577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_177539047_177546077_177546205_177546411
transcript_34880.known	chr2	-	1807	5	FSM	ENSMUSG00000078862.11	ENSMUST00000108930.9	1807	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	8.13557004763649	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTAAAGCCTTTGCAGG	NA	False	NA	NA	False	NA	NA	NA	177599090	177587329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_177588804_177589962_177590024_177590229_177590357_177595474_177595530_177599000
transcript_34881.known	chr2	-	767	4	FSM	ENSMUSG00000078862.11	ENSMUST00000108928.2	767	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	8.5764535535124	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTCAGCTGTGTGAATA	NA	False	NA	NA	False	NA	NA	NA	177599032	177589470	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_177590024_177590229_177590357_177595474_177595530_177599000
transcript_34884.known	chr2	-	1372	3	FSM	ENSMUSG00000078861.9	ENSMUST00000108923.2	1372	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	29	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCAAATTTTAAAAGAATTCA	NA	False	NA	-14	True	NA	NA	NA	177720269	177710282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_177711409_177711615_177711743_177720150
transcript_34885.known	chr2	+	737	3	FSM	ENSMUSG00000039138.2	ENSMUST00000041998.2	737	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	6	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCTTGGTAATGACCCT	NA	False	NA	7	True	AATAAA	-22	NA	179056728	179058675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_179056894_179057552_179057714_179058264
transcript_34886.nnic	chr2	+	591	3	NNC	ENSMUSG00000039138.2	novel	737	3	NA	NA	-5	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	32	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCATTTCCTTGGTAATGA	NA	False	NA	3	True	AATAAA	-18	NA	179056723	179058671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_179056894_179057552_179057714_179058411
transcript_34887.nnic	chr2	+	1727	3	NNC	ENSMUSG00000039138.2	novel	737	3	NA	NA	-5	2046	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	26.5	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAACAAAAACAAAAAA	NA	False	NA	NA	False	NA	NA	NA	179056723	179060721	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_179056894_179057552_179057714_179059325
transcript_34888.nnic	chr2	+	2149	3	NNC	ENSMUSG00000039138.2	novel	737	3	NA	NA	-5	2468	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	26.5	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGTCTTAGCTGCATTT	NA	False	NA	11	True	NA	NA	NA	179056723	179061143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_179056894_179057552_179057714_179059325
transcript_3489.nic	chr1	-	1428	10	NIC	ENSMUSG00000016481.16	novel	1651	10	NA	NA	-66	0	combination_of_known_junctions	FALSE	canonical	3	121	junction_9	50.3432661280975	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTGTGGTTCATACTT	NA	False	NA	-1	True	AATAAA	-19	NA	194813960	194786097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_194786216_194789125_194789231_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813809
transcript_34892.known	chr2	-	914	7	FSM	ENSMUSG00000027566.16	ENSMUST00000029082.9	914	7	0	0	0	0	multi-exon	FALSE	canonical	3	3926	junction_1	568.041078326794	1662	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTGATGAGAACCTGTC	NA	False	NA	-12	True	AATAAA	-17	NA	179684226	179678166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_179678367_179678730_179678794_179679175_179679296_179679857_179679981_179680517_179680643_179681145_179681273_179684070
transcript_34900.nic	chr2	+	1760	10	NIC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	3	103	junction_3	39.9749921826134	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712324	179727695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_179712409_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
transcript_34901.known	chr2	+	1730	10	FSM	ENSMUSG00000039069.20	ENSMUST00000184862.8	1730	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_8	58.7703208880465	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712384	179727695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_179712409_179713586_179713680_179714932_179715027_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726106_179726243_179726383_179727172
transcript_34907.nnic	chr2	+	1560	9	NIC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_3	58.60873974929	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712385	179727695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_179712409_179713586_179713680_179714932_179715027_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
transcript_34908.nnic	chr2	+	1666	9	NIC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	-56	0	combination_of_known_splicesites	FALSE	canonical	3	49	junction_2	53.7558136390847	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712324	179727695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_179712409_179713586_179713680_179719796_179719936_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
transcript_34915.nic	chr2	+	1527	8	NIC	ENSMUSG00000039069.20	novel	1730	10	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_2	60.3080527333605	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTCTGTGTCTTTA	NA	False	NA	NA	False	AATATA	-1	NA	179712324	179727695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_179712409_179713586_179713680_179720411_179720617_179723878_179724027_179725137_179725254_179725856_179726076_179726243_179726383_179727172
transcript_3492.known	chr1	-	1501	9	FSM	ENSMUSG00000016481.16	ENSMUST00000194111.6	1501	9	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_8	99.5100497437319	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTGGTATCAGGAGTGAG	NA	False	NA	53	True	NA	NA	NA	194813631	194780966	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_194781150_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813367
transcript_34923.known	chr2	+	2805	14	FSM	ENSMUSG00000039050.9	ENSMUST00000040668.9	2805	14	0	0	0	0	multi-exon	TRUE	canonical	3	166	junction_6	20.3809866146027	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACATGGGTTGAAGGTTTGA	NA	False	NA	10	True	ATTAAA	-16	NA	179761098	179804473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_179761263_179778771_179778906_179780005_179780151_179782897_179782974_179786624_179786760_179786881_179786980_179790218_179790402_179791971_179792080_179792808_179792899_179794991_179795116_179797059_179797201_179799621_179799746_179800821_179800913_179803281
transcript_34927.known	chr2	+	1688	13	FSM	ENSMUSG00000039050.9	ENSMUST00000142376.2	1688	13	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_6	20.4306074853936	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCACATATGTTGCTTAAAA	NA	False	NA	NA	False	AATGAA	-18	NA	179761196	179801085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_179761263_179778771_179778906_179780005_179780151_179782897_179782974_179786624_179786760_179786881_179786980_179790218_179790402_179791971_179792080_179792808_179792899_179794991_179795116_179797059_179797201_179799621_179799746_179800821
transcript_34929.known	chr2	+	1535	10	FSM	ENSMUSG00000039041.16	ENSMUST00000061437.5	1535	10	0	0	0	0	multi-exon	FALSE	canonical	3	1931	junction_6	170.679108342794	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATGGTCTGGGCCTGTGTT	NA	False	NA	2	True	AATAAA	-22	NA	179813277	179818079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_179813482_179813826_179814041_179814648_179814766_179815702_179815827_179816101_179816189_179816657_179816740_179816952_179817186_179817390_179817549_179817646_179817750_179817866
transcript_3493.nic	chr1	-	1580	9	NIC	ENSMUSG00000016481.16	novel	2776	10	NA	NA	4	-52	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	81.0361609098062	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTCTTGGTCATGGTGTC	NA	False	NA	1	True	NA	NA	NA	194813890	194781018	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_194781150_194793387_194793464_194794681_194794706_194796963_194797150_194799786_194800189_194805997_194806084_194811454_194811555_194812137_194812318_194813495
transcript_34936.known	chr2	+	394	6	FSM	ENSMUSG00000039001.13	ENSMUST00000059080.7	394	6	0	0	0	0	multi-exon	FALSE	canonical	3	3954	junction_5	1417.02976680097	10828	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTTTGCTGTTTTTAC	NA	False	NA	26	True	AATAAA	-27	NA	179899169	179900238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_179899241_179899413_179899477_179899580_179899645_179899778_179899851_179900022_179900079_179900170
transcript_34942.known	chr2	+	481	5	FSM	ENSMUSG00000039001.13	ENSMUST00000148629.2	481	5	0	0	0	0	multi-exon	FALSE	canonical	3	5195	junction_1	969.972422288386	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTCTGCTTTTGCTGTTTT	NA	False	NA	23	True	AATAAA	-24	NA	179899171	179900235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_179899241_179899413_179899477_179899580_179899645_179899778_179899851_179900022
transcript_34948.known	chr2	+	404	2	FSM	ENSMUSG00000039001.13	ENSMUST00000125301.8	404	2	0	0	0	0	multi-exon	FALSE	canonical	3	5195	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCACAGGCCGGTTTAATGG	NA	False	NA	NA	False	NA	NA	NA	179899210	179899787	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_179899241_179899413
transcript_34949.nnic	chr2	+	2764	13	NNC	ENSMUSG00000038963.16	novel	3002	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_9	16.583123951777	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACCAATGATCCTTGTGTG	NA	False	NA	3	True	AATATA	-12	NA	180098126	180116638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_180098167_180105733_180106622_180107389_180107481_180108850_180108973_180109359_180109472_180112896_180113052_180113846_180114043_180114197_180114364_180114453_180114473_180114607_180114627_180114895_180114961_180115306_180115456_180115896
transcript_34950.known	chr2	+	3010	12	FSM	ENSMUSG00000038963.16	ENSMUST00000038259.13	3010	12	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	7.21568539381252	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTATGTCTAAGCGTCTG	NA	False	NA	25	True	AATATA	-34	NA	180098037	180116660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180098167_180105733_180106622_180107389_180107481_180108850_180108973_180109359_180109472_180112896_180113052_180113846_180114043_180114197_180114364_180114453_180114627_180114895_180114961_180115306_180115456_180115896
transcript_34954.nic	chr2	+	1647	5	NIC	ENSMUSG00000027569.16	novel	1825	4	NA	NA	-17	0	combination_of_known_junctions	TRUE	canonical	3	6	junction_3	27.8836869871974	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATCTTGGAAGTTGTATG	NA	False	NA	NA	False	ATTAAA	-20	NA	180224487	180228097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_180224749_180225193_180225316_180226198_180226281_180226486_180226665_180227093
transcript_34956.known	chr2	+	1510	5	FSM	ENSMUSG00000027569.16	ENSMUST00000029085.9	1510	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	10.4253297309965	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACTAAAAAAAAAAAAAACCT	NA	False	NA	NA	False	ATTAAA	-3	NA	180224504	180228080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180224749_180225193_180225316_180226198_180226281_180226589_180226665_180227093
transcript_34957.known	chr2	+	1825	4	FSM	ENSMUSG00000027569.16	ENSMUST00000150757.8	1825	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	3.55902608401044	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATCTTGGAAGTTGTATG	NA	False	NA	NA	False	ATTAAA	-20	NA	180224515	180228097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180224749_180225193_180225316_180226198_180226665_180227093
transcript_34958.nnic	chr2	+	2232	9	NNC	ENSMUSG00000049401.11	novel	2449	7	NA	NA	-61	-7	at_least_one_novel_splicesite	TRUE	canonical	3	37	junction_7	18.4306131205666	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTGTGGCCGTGTT	NA	False	NA	15	True	AATAAA	-15	NA	180231193	180237622	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_180231415_180232779_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000_180236947_180236973_180237082_180237108
transcript_34961.nnic	chr2	+	2234	8	NNC	ENSMUSG00000049401.11	novel	2449	7	NA	NA	-61	-5	at_least_one_novel_splicesite	TRUE	canonical	3	58	junction_7	13.998542198153	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTGTGGCCGTGTTCT	NA	False	NA	17	True	AATAAA	-17	NA	180231193	180237624	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_+_180231415_180232779_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000_180236947_180237000
transcript_34962.known	chr2	+	2449	7	FSM	ENSMUSG00000049401.11	ENSMUST00000029087.4	2449	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_6	11.4370256428652	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGGCCGTGTTCTGTTTG	NA	False	NA	22	True	AATAAA	-22	NA	180231037	180237629	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180231415_180232779_180232849_180233409_180233489_180234219_180234299_180234896_180234964_180235362_180235512_180236000
transcript_34963.nic	chr2	+	2181	22	ISM	ENSMUSG00000027570.16	ENSMUST00000103059.2	2846	32	6732	384	1769	199	3prime_fragment	FALSE	canonical	2	8	junction_11	3.68363421063118	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTAGTACTGGTTATAGTG	NA	False	NA	NA	False	AATAAA	-20	NA	180246746	180263594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr2_+_180247068_180247519_180247574_180248267_180248322_180248600_180248655_180248875_180248930_180249419_180249474_180250224_180250279_180251118_180251173_180251273_180251328_180251848_180251894_180251982_180252037_180252452_180252507_180253052_180253107_180253221_180253294_180254746_180254783_180255939_180255985_180257080_180257114_180257269_180257417_180257595_180257651_180258173_180258357_180261485_180261564_180263022
transcript_34965.known	chr2	-	2225	6	FSM	ENSMUSG00000038932.14	ENSMUST00000037877.11	2225	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	24.9591666527551	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTCCCAGTGAGTCGCTTT	5369	False	NA	NA	False	AATAAA	-19	NA	180284501	180263748	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_180264508_180277046_180277189_180280196_180280441_180282093_180282257_180282673_180282858_180283768
transcript_34967.known	chr2	+	1655	5	FSM	ENSMUSG00000027573.12	ENSMUST00000029090.9	1655	5	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_3	7.56224173112709	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGGCTTCTAAAAAGTTCT	NA	False	NA	18	True	AATAAA	-29	NA	180351909	180360526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180352144_180354983_180355114_180356482_180356680_180358651_180358850_180359630
transcript_34969.nic	chr2	+	2146	13	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-57	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	51.5985437994351	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	29	True	ATTAAA	-14	NA	180367114	180384073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_180367245_180373672_180373801_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
transcript_3497.known	chr10	+	1016	4	FSM	ENSMUSG00000040624.19	ENSMUST00000238840.2	1016	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.12825877028341	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATTAGCTCTAGTATACC	NA	False	NA	NA	False	NA	NA	NA	3784963	3869422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_3785077_3822926_3823442_3853556_3853658_3869135
transcript_34970.known	chr2	+	2275	13	FSM	ENSMUSG00000023393.16	ENSMUST00000094218.4	2275	13	0	0	0	0	multi-exon	TRUE	canonical	3	124	junction_2	30.6879455161143	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	29	True	ATTAAA	-14	NA	180367055	180384073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180367245_180373672_180373871_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
transcript_34974.nnic	chr2	+	2245	12	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	-5	0	combination_of_known_splicesites	TRUE	canonical	3	16	junction_8	63.6142818831128	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	29	True	ATTAAA	-14	NA	180367050	180384073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_180367245_180373672_180373871_180374225_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180381611_180381728_180382318_180382375_180382505_180382536_180383075
transcript_34977.nic	chr2	+	2579	12	NIC	ENSMUSG00000023393.16	novel	2275	13	NA	NA	51	0	intron_retention	FALSE	canonical	3	182	junction_6	18.7713514794124	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGTTGTTTTATTCAATA	NA	False	NA	29	True	ATTAAA	-14	NA	180367106	180384073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_180367245_180373672_180374366_180375509_180375610_180377635_180377767_180378479_180378577_180378799_180378897_180379384_180379473_180380201_180380237_180381611_180381728_180382318_180382375_180382505_180382536_180383075
transcript_3498.known	chr10	+	3669	28	FSM	ENSMUSG00000040675.18	ENSMUST00000117291.8	3669	28	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_27	39.2310170953031	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTCAGCTAGTAAAGCCA	NA	False	NA	14	True	AATAAA	-19	NA	3923117	4106111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105541
transcript_34987.known	chr2	+	1178	7	FSM	ENSMUSG00000038840.8	ENSMUST00000108875.2	1178	7	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	4.30761599444003	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTCAGCTAGGCTCTCTC	NA	False	NA	NA	False	AATAAA	-19	NA	180570815	180575803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180571307_180572597_180572698_180573051_180573131_180573211_180573258_180574711_180574784_180574929_180575129_180575612
transcript_34988.known	chr2	+	1529	6	FSM	ENSMUSG00000038840.8	ENSMUST00000137859.2	1529	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	3.81575680566778	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGCTCAGCTAGGCTCT	NA	False	NA	NA	False	AATAAA	-16	NA	180570815	180575800	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180571307_180572597_180573131_180573211_180573258_180574711_180574784_180574929_180575129_180575612
transcript_34989.known	chr2	-	950	7	FSM	ENSMUSG00000027574.16	ENSMUST00000103053.10	950	7	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_2	10.8576649832682	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAATTCGCATCCCTGGT	NA	False	NA	NA	False	NA	NA	NA	180596492	180576564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_180576823_180577735_180577821_180578943_180579005_180584822_180585021_180585533_180585615_180585869_180586008_180596363
transcript_3499.known	chr10	+	3535	28	FSM	ENSMUSG00000040675.18	ENSMUST00000043735.8	3535	28	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_27	66.4418431300526	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTTCAGCTAGTAAAGCCA	NA	False	NA	14	True	AATAAA	-19	NA	3923143	4106111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105649
transcript_34993.known	chr2	+	2714	14	FSM	ENSMUSG00000027575.20	ENSMUST00000029092.13	2714	14	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	25.5745805752046	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCAGTGCTTGCTTCAC	4034	False	NA	25	True	NA	NA	NA	180609026	180624319	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180609123_180609394_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180621453_180621514_180622190_180622268_180622829
transcript_34997.nic	chr2	+	1963	14	NIC	ENSMUSG00000027575.20	novel	2714	14	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	65.799947842644	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTGCTAGTTCTTTC	4027	False	NA	NA	False	TTTAAA	-5	NA	180609019	180623493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_180609123_180609326_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180621453_180621514_180622190_180622268_180622829
transcript_34998.nic	chr2	+	2723	14	NIC	ENSMUSG00000027575.20	novel	2714	14	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	65.799947842644	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGTGGTTTGTGTGTCT	4027	False	NA	-41	True	NA	NA	NA	180609019	180624253	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_+_180609123_180609326_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180621453_180621514_180622190_180622268_180622829
transcript_35.known	ERCC-00096	+	1091	1	FSM	ERCC-00096A	DQ459429	1091	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	14419	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00096_+_0_1100
transcript_3500.nnic	chr10	+	3581	28	NNC	ENSMUSG00000040675.18	novel	3669	28	NA	NA	-63	-2	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_27	86.4681487065656	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGTGTTCAGCTAGTAAAGC	NA	False	NA	12	True	AATAAA	-17	NA	3923054	4106109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_3923479_3928633_3928719_3930215_3930267_3930350_3930405_3934083_3934209_3935565_3935667_3939860_3939998_3957741_3957854_3965513_3965606_3966723_3966822_3968425_3968600_3978394_3978532_3980689_3980737_3982231_3982340_3983288_3983364_3985215_3985319_3991772_3991850_3997830_3997972_3998199_3998269_4006749_4006862_4033736_4033877_4038233_4038276_4039294_4039396_4039995_4040174_4053235_4053344_4056376_4056530_4098008_4098127_4105690
transcript_35002.known	chr2	+	1885	13	FSM	ENSMUSG00000027575.20	ENSMUST00000108861.8	1885	13	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_11	89.7402114748765	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTGCTAGTTCTTTC	4045	False	NA	NA	False	TTTAAA	-5	NA	180609037	180623493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180609123_180609326_180609608_180612843_180612908_180613366_180613477_180613776_180613949_180614487_180614589_180615253_180615341_180615852_180615950_180618099_180618157_180619112_180619146_180620963_180621021_180622190_180622268_180622829
transcript_35009.known	chr2	+	1160	5	FSM	ENSMUSG00000016344.15	ENSMUST00000016488.13	1160	5	0	0	0	0	multi-exon	TRUE	canonical	3	201	junction_1	270.955139275859	171	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCCCAAGGTTGGGGATA	3336	False	NA	NA	False	NA	NA	NA	180829039	180830564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180829248_180829342_180829530_180829601_180829680_180829796_180829894_180829974
transcript_35010.known	chr2	+	689	5	FSM	ENSMUSG00000016344.15	ENSMUST00000108841.2	689	5	0	0	0	0	multi-exon	TRUE	canonical	3	258	junction_1	248.035279748668	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3425	False	NA	1	True	AATAAA	-17	NA	180829128	180830297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180829248_180829457_180829530_180829601_180829680_180829796_180829894_180829974
transcript_35013.known	chr2	+	1153	4	FSM	ENSMUSG00000016344.15	ENSMUST00000127971.8	1153	4	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	312.789954371229	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCCTCCCCACTACTTGC	3385	False	NA	NA	False	NA	NA	NA	180829088	180830534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180829248_180829342_180829680_180829796_180829894_180829974
transcript_35015.known	chr2	+	750	4	FSM	ENSMUSG00000016344.15	ENSMUST00000146089.8	750	4	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	285.921123544395	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3436	False	NA	1	True	AATAAA	-17	NA	180829139	180830297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180829248_180829457_180829680_180829796_180829894_180829974
transcript_35019.known	chr2	+	771	3	FSM	ENSMUSG00000016344.15	ENSMUST00000138800.8	771	3	0	0	0	0	multi-exon	FALSE	canonical	3	861	junction_2	3.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	3625	False	NA	1	True	AATAAA	-17	NA	180829328	180830297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180829680_180829796_180829894_180829974
transcript_35020.known	chr2	+	510	2	FSM	ENSMUSG00000016344.15	ENSMUST00000135011.2	510	2	0	0	0	0	multi-exon	FALSE	canonical	3	861	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGGTATGTTTGAAAC	4003	False	NA	1	True	AATAAA	-17	NA	180829706	180830297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180829894_180829974
transcript_35021.known	chr2	-	2562	8	FSM	ENSMUSG00000027579.7	ENSMUST00000016498.5	2562	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.880630571852711	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGGTTCCCAGAATGCAA	NA	False	NA	NA	False	AATAAA	-21	NA	180854978	180847354	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_180848174_180848427_180848585_180848665_180848848_180849411_180849571_180849656_180849799_180850467_180850635_180851241_180851364_180854164
transcript_35023.known	chr2	-	1136	5	FSM	ENSMUSG00000027581.13	ENSMUST00000103045.4	1136	5	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	19.0312243431683	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAACGTGTGGCTTTTCAT	NA	False	NA	-6	True	AATAAA	-16	NA	180956293	180948251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_180948617_180949008_180949201_180950513_180950690_180950939_180951036_180955986
transcript_35024.known	chr2	+	4401	34	FSM	ENSMUSG00000038685.19	ENSMUST00000054622.15	4401	34	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_31	50.0269348938753	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	15	True	AATAAA	-16	NA	180961554	180998409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180996801_180996919_180997102_180997346_180997443_180997606_180997716
transcript_35025.known	chr2	+	4307	33	FSM	ENSMUSG00000038685.19	ENSMUST00000098971.11	4307	33	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_30	51.0130095998805	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	15	True	AATAAA	-16	NA	180961531	180998409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997102_180997346_180997443_180997606_180997716
transcript_35026.known	chr2	+	4243	33	FSM	ENSMUSG00000038685.19	ENSMUST00000108815.8	4243	33	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_30	41.94582396899	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTCTGTATTGTGGTCT	NA	False	NA	15	True	AATAAA	-16	NA	180961577	180998409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_180961650_180962598_180962851_180964104_180964304_180964593_180964688_180965155_180965238_180965476_180965538_180970395_180970472_180972585_180972671_180976704_180976771_180977685_180977840_180980848_180980888_180980955_180981035_180982288_180982387_180983317_180983374_180988624_180988700_180988805_180988888_180990967_180991101_180991255_180991370_180991461_180991503_180991687_180991774_180991918_180991997_180992427_180992506_180992819_180992967_180993044_180993161_180993368_180993493_180993595_180993747_180993833_180993974_180994545_180994642_180995769_180995969_180996145_180996236_180997120_180997346_180997443_180997606_180997716
transcript_35028.known	chr2	+	3666	11	FSM	ENSMUSG00000027582.17	ENSMUST00000116366.9	3666	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	46.2520269826091	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTTGGCTCTTGGTTGCTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	181007215	181025421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167_181023188_181023986_181024108_181024279_181024338_181024408_181024497_181024591_181024954_181025050
transcript_35029.nic	chr2	-	1739	8	NIC	ENSMUSG00000038671.16	novel	2447	8	NA	NA	-5	-605	combination_of_known_junctions	FALSE	canonical	3	46	junction_7	90.1022095359781	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTAGATGGTGGTTCCC	6114	False	NA	-6	True	AATAAA	-27	NA	181007159	181000282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006492_181007011
transcript_35030.known	chr2	-	1133	8	FSM	ENSMUSG00000038671.16	ENSMUST00000108808.8	1133	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	105.774307285052	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAAGGGTGTGTGGGGGGG	6129	False	NA	NA	False	NA	NA	NA	181007144	181000892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007005
transcript_35033.nic	chr2	-	914	8	NIC	ENSMUSG00000038671.16	novel	2447	8	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_7	90.1022095359781	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGTGTAGGTATTCAGA	6114	False	NA	NA	False	NA	NA	NA	181007159	181001107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006492_181007011
transcript_35039.known	chr2	-	2318	7	FSM	ENSMUSG00000038671.16	ENSMUST00000185118.8	2318	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	105.887387770635	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTAGCCAGTCACAAGGA	6138	False	NA	34	True	AATAAA	-18	NA	181007135	180999621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_181001355_181001431_181001533_181003183_181003266_181005806_181005890_181006103_181006192_181006397_181006505_181007011
transcript_35044.known	chr2	+	2072	6	FSM	ENSMUSG00000027582.17	ENSMUST00000108807.9	2072	6	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_3	10.1074230147946	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATTCTCTCAGTGGAGAC	NA	False	NA	5	True	ATTAAA	-12	NA	181007197	181022575	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_181008046_181020175_181020310_181020543_181020700_181021362_181021483_181021566_181021973_181022167
transcript_35051.known	chr2	-	1822	5	FSM	ENSMUSG00000038671.16	ENSMUST00000152580.8	1822	5	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_2	29.3715423496962	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGTGTAGGTATTCAGA	6146	False	NA	NA	False	NA	NA	NA	181007127	181001107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_181001355_181001431_181001533_181002793_181002865_181003183_181003266_181005806
transcript_35052.known	chr2	+	985	9	FSM	ENSMUSG00000000827.19	ENSMUST00000108799.10	985	9	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_5	401.298965080898	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTGTGCCATCCTTTCAA	NA	False	NA	36	True	CATAAA	-33	NA	181139023	181157180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181152296_181152324_181153366_181153409_181154831_181154881_181156872
transcript_35060.known	chr2	+	3603	8	FSM	ENSMUSG00000000827.19	ENSMUST00000149163.8	3603	8	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_5	184.043805788132	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTTGTAAGGTTTTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	181138957	181159759	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181153366_181153409_181154831_181154881_181156872
transcript_35066.known	chr2	+	2950	7	FSM	ENSMUSG00000000827.19	ENSMUST00000000844.15	2950	7	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_5	284.174486695919	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGACAATTCACTATGCTCC	NA	False	NA	NA	False	NA	NA	NA	181138973	181159164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181144668_181144729_181149958_181150061_181154831_181154881_181156872
transcript_35070.known	chr2	+	1799	7	FSM	ENSMUSG00000000827.19	ENSMUST00000069712.9	1799	7	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_3	303.991227943615	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGCTGTCATCTTT	NA	False	NA	NA	False	AATGAA	-44	NA	181138991	181158049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181153366_181153409_181154831_181154881_181156872
transcript_35073.known	chr2	+	3475	6	FSM	ENSMUSG00000000827.19	ENSMUST00000108800.8	3475	6	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_3	391.498454658508	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAACATTTGTAAGGTTT	NA	False	NA	NA	False	AATAAA	-23	NA	181138979	181159755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_181139126_181141637_181141784_181143697_181143847_181149958_181150061_181154831_181154881_181156872
transcript_35080.known	chr2	+	3728	6	FSM	ENSMUSG00000000826.17	ENSMUST00000116365.9	3728	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	67.7642973843897	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAACAAAACAAAAG	7046	False	NA	NA	False	NA	NA	NA	181162318	181194042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_181162491_181188163_181188282_181189132_181189347_181190462_181190635_181190718_181190794_181191065
transcript_35081.known	chr2	+	3664	6	FSM	ENSMUSG00000000826.17	ENSMUST00000108797.8	3664	6	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	79.8884221899519	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAACAAAGCAAA	7071	False	NA	NA	False	NA	NA	NA	181162343	181194025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_181162491_181163027_181163081_181188163_181188282_181189132_181189347_181190462_181190635_181191065
transcript_35082.known	chr2	+	6578	5	FSM	ENSMUSG00000000826.17	ENSMUST00000072334.12	6578	5	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_4	50.7413785780402	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTTTGTCTTTTTAATT	7005	False	NA	NA	False	NA	NA	NA	181162277	181196926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_181162491_181188163_181188282_181189132_181189347_181190462_181190635_181191065
transcript_35083.known	chr2	+	3054	21	FSM	ENSMUSG00000002455.15	ENSMUST00000002529.7	3054	21	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_3	47.7921280128851	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGGGGCTTGGGCCTCA	2494	False	NA	28	True	ATTAAA	-16	NA	181243111	181297453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_181243325_181249912_181250082_181257769_181257889_181262361_181262441_181263579_181263757_181263954_181264111_181273227_181273323_181273723_181273881_181274547_181274711_181277825_181277945_181278685_181278905_181282384_181282508_181287263_181287386_181289081_181289221_181290818_181290939_181291214_181291392_181291889_181292024_181292878_181292971_181294226_181294342_181296628_181296756_181297214
transcript_35095.nnic	chr2	-	1803	15	NNC	ENSMUSG00000089917.8	novel	1849	15	NA	NA	451	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_14	30.5998699477028	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCGTGTGGCAGAATGTA	5380	False	NA	-2	True	AATAAA	-20	NA	181222968	181210944	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214262_181214280_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181222858
transcript_35096.known	chr2	-	1849	15	FSM	ENSMUSG00000089917.8	ENSMUST00000057816.15	1849	15	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_14	14.4936650482413	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGTGTGGCAGAATGTAACC	4547	False	NA	1	True	AATAAA	-23	NA	181223801	181210941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214262_181214280_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
transcript_35098.nnic	chr2	-	1815	14	NNC	ENSMUSG00000089917.8	novel	1782	14	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	30.2142252636738	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCGTGTGGCAGAATGTA	4518	False	NA	-2	True	AATAAA	-20	NA	181223830	181210944	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212349_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
transcript_35099.known	chr2	-	1782	14	FSM	ENSMUSG00000089917.8	ENSMUST00000129469.8	1782	14	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_7	28.5913877876066	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTAGAAAATGATCGTGT	4583	False	NA	-13	True	AATAAA	-40	NA	181223765	181210955	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_181211184_181211260_181211418_181211488_181211597_181211701_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
transcript_35101.nic	chr2	-	1925	14	NIC	ENSMUSG00000089917.8	novel	1849	15	NA	NA	-4	0	intron_retention	FALSE	canonical	3	84	junction_13	13.7819022055146	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCGTGTGGCAGAATGTA	4573	False	NA	-2	True	AATAAA	-20	NA	181223775	181210944	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_181211184_181211260_181211418_181211488_181211825_181211925_181211989_181212101_181212196_181212292_181212392_181214262_181214280_181214866_181214929_181215007_181215198_181216004_181216077_181216161_181216333_181216443_181216551_181216639_181216831_181223648
transcript_35109.known	chr2	-	2131	5	FSM	ENSMUSG00000038605.12	ENSMUST00000183836.2	2131	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	19.6850196850295	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCTCAGTGTTGGGTC	1043	False	NA	-5	True	AATAAA	-11	NA	181240991	181237013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_181238399_181238539_181238681_181238964_181239137_181239220_181239387_181240724
transcript_35110.known	chr2	-	2164	5	FSM	ENSMUSG00000038605.12	ENSMUST00000060173.9	2164	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	9.60143218483576	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCAGTGTTGGGTCTCT	1029	False	NA	-2	True	AATAAA	-14	NA	181241005	181237010	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_181238399_181238539_181238681_181238964_181239137_181239220_181239403_181240724
transcript_35111.known	chr2	-	676	4	FSM	ENSMUSG00000089917.8	ENSMUST00000146823.8	676	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_3	13.0724477007517	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACCCTGTATGGTGCGA	4577	False	NA	NA	False	ATTAAA	-21	NA	181223771	181216077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_181216333_181216443_181216551_181216639_181216831_181223648
transcript_35112.known	chr2	-	569	3	FSM	ENSMUSG00000089917.8	ENSMUST00000156308.8	569	3	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTTAGAAAATGATCGT	1453	False	NA	-15	True	AATAAA	-38	NA	181211674	181210957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_181211184_181211260_181211418_181211488
transcript_35113.known	chr2	+	1183	10	FSM	ENSMUSG00000059540.16	ENSMUST00000103042.10	1183	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	6.17841723309237	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTGGGTCCTGTCCTTCC	2292	False	NA	22	True	ATTAAA	-36	NA	181322102	181329864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_181322269_181325005_181325069_181325340_181325447_181326235_181326327_181327584_181327716_181327982_181328040_181328390_181328546_181328620_181328768_181329406_181329479_181329669
transcript_35115.nic	chr2	-	940	6	NIC	ENSMUSG00000002458.14	novel	1511	6	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	48.4090900554844	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTCTTTCAAGTTGCT	NA	False	NA	-12	True	AATAAA	-17	NA	181335773	181330211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_181330512_181331169_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335671
transcript_35116.known	chr2	-	1216	6	FSM	ENSMUSG00000002458.14	ENSMUST00000108776.8	1216	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_5	50.8660987299006	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGCTGGCCCTGTCCAACT	NA	False	NA	NA	False	NA	NA	NA	181335603	181330858	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335155
transcript_35117.known	chr2	-	1511	6	FSM	ENSMUSG00000002458.14	ENSMUST00000002532.9	1511	6	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_5	20.8461027532726	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTGTTCTTTCAAGTT	NA	False	NA	-15	True	AATAAA	-14	NA	181335770	181330214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335671
transcript_35120.known	chr2	-	779	5	FSM	ENSMUSG00000002458.14	ENSMUST00000108772.8	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	46.2729672703189	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTGCAGGGTTCTAAGCT	NA	False	NA	NA	False	AATAGA	-15	NA	181335740	181330810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_181331089_181331169_181331405_181331494_181331570_181333025_181333148_181335671
transcript_35122.known	chr2	-	1460	5	FSM	ENSMUSG00000002458.14	ENSMUST00000108769.8	1460	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_4	23.2849200127464	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAAGCTGTTGTTATGGT	NA	False	NA	-3	True	AGTAAA	-10	NA	181335723	181330299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_-_181331405_181331494_181331570_181333025_181333148_181333282_181333389_181335671
transcript_35124.nic	chr2	-	1481	4	NIC	ENSMUSG00000002458.14	novel	1511	6	NA	NA	5	0	intron_retention	FALSE	canonical	3	30	junction_3	52.8036194045657	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTTTGTTCTTTCAAGTT	NA	False	NA	-15	True	AATAAA	-14	NA	181335765	181330214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr2_-_181331405_181331494_181331570_181333025_181333148_181335671
transcript_35125.known	chr2	+	3499	7	FSM	ENSMUSG00000027589.15	ENSMUST00000108754.8	3499	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	27.4028587316482	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTATTCTCAGTATTGCT	NA	False	NA	11	True	AATAAA	-14	NA	181479705	181499239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_181479778_181482947_181483132_181484167_181484499_181486188_181486292_181488260_181488433_181493374_181493503_181496730
transcript_35126.known	chr2	+	2948	3	FSM	ENSMUSG00000038628.9	ENSMUST00000039551.9	2948	3	0	0	0	0	multi-exon	FALSE	canonical	3	712	junction_2	38.5	184	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATTAGTGCATATAAGTGT	8896	False	NA	NA	False	NA	NA	NA	181506129	181512623	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr2_+_181506363_181507738_181507827_181509996
transcript_35128.known	chr3	-	2038	6	FSM	ENSMUSG00000040374.14	ENSMUST00000165309.8	2038	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	22.6856783015188	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGACTAGAGGTCTTTTGT	NA	False	NA	NA	False	AATAAA	-22	NA	5641210	5625247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5630192_5630259_5641097
transcript_35129.known	chr3	-	1777	6	FSM	ENSMUSG00000040374.14	ENSMUST00000071280.8	1777	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	21.3672646822189	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGATGATTGTGCATTTAT	NA	False	NA	-4	True	AATAAA	-16	NA	5641188	5625563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5635546_5635690_5641097
transcript_35132.known	chr3	-	1749	5	FSM	ENSMUSG00000040374.14	ENSMUST00000059021.10	1749	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	14.3592304807744	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATTGTGCATTTATTTTT	NA	False	NA	0	True	AATAAA	-20	NA	5641299	5625559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_5626825_5627728_5627793_5628224_5628333_5628679_5628790_5641097
transcript_35134.known	chr3	-	1587	4	FSM	ENSMUSG00000040374.14	ENSMUST00000195855.6	1587	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	22.2161102706022	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATTGTGCATTTATTTTT	NA	False	NA	0	True	AATAAA	-20	NA	5641205	5625559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_5626821_5628224_5628333_5628679_5628790_5641097
transcript_35135.nic	chr3	-	1577	4	NIC	ENSMUSG00000040374.14	novel	2051	5	NA	NA	-4	-1	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	25.9786236911983	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGATTGTGCATTTATTTT	NA	False	NA	-1	True	AATAAA	-19	NA	5641192	5625560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_5626825_5628224_5628333_5628679_5628790_5641097
transcript_35136.known	chr3	+	3617	3	FSM	ENSMUSG00000027499.13	ENSMUST00000028999.12	3617	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTCTCTCAAGAGTCAT	2674	False	NA	21	True	ATTAAA	-22	NA	7431729	7510426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_7431813_7502397_7502576_7507070
transcript_35139.known	chr3	+	3292	9	FSM	ENSMUSG00000043542.13	ENSMUST00000051064.9	3292	9	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_7	36.9256008752735	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTCTTTTTTTTCTTGG	NA	False	NA	10	True	NA	NA	NA	7568542	7618896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_7568588_7581515_7581593_7583423_7583541_7589185_7589328_7591328_7591478_7593089_7593190_7593644_7593745_7604135_7604244_7616442
transcript_3514.known	chr10	+	6195	4	FSM	ENSMUSG00000038587.11	ENSMUST00000045730.7	6195	4	0	0	0	0	multi-exon	FALSE	canonical	3	1052	junction_2	280.358104335628	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACTGTTTTTTTATTAA	NA	False	NA	23	True	AATAAA	-19	NA	4216379	4309470	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_4216669_4263742_4263858_4303141_4307940_4308477
transcript_35146.known	chr3	+	2073	5	FSM	ENSMUSG00000027500.11	ENSMUST00000029002.9	2073	5	0	0	0	0	multi-exon	FALSE	canonical	3	1699	junction_2	84.762535946018	1174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACGGTTTGGTCTGGTCTC	NA	False	NA	23	True	AATAAA	-23	NA	8574419	8626666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_8574691_8606900_8606997_8610632_8610806_8619851_8620044_8625325
transcript_3515.known	chr10	-	3086	3	FSM	ENSMUSG00000075327.11	ENSMUST00000100077.5	3086	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	37	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGATCGTTTTCTTGCT	NA	False	NA	NA	False	AATAAA	-17	NA	4337475	4317074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_4319852_4324569_4324755_4337351
transcript_35150.known	chr3	-	783	3	FSM	ENSMUSG00000040269.6	ENSMUST00000042148.6	783	3	0	0	0	0	multi-exon	FALSE	canonical	3	890	junction_1	0.5	813	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGCCGTGGTTCTTTT	NA	False	NA	-1	True	NA	NA	NA	8988978	8867205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_8867475_8965045_8965228_8988646
transcript_35152.known	chr3	-	3081	7	FSM	ENSMUSG00000027506.16	ENSMUST00000091355.12	3081	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1376.49082815688	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGTTCTTTTTTATGTATT	NA	False	NA	NA	False	AATAAA	-17	NA	9069538	8993685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_8996235_9000051_9000101_9001498_9001541_9009670_9009773_9012540_9012690_9018743_9018860_9069464
transcript_35155.known	chr3	-	697	7	FSM	ENSMUSG00000027506.16	ENSMUST00000063496.14	697	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1367.6783247533	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTTATTTAGCTTTACT	NA	False	NA	NA	False	NA	NA	NA	9069499	8996015	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_8996235_9000051_9000101_9008610_9008638_9009670_9009773_9012540_9012690_9018743_9018860_9069464
transcript_35157.known	chr3	-	673	7	FSM	ENSMUSG00000027506.16	ENSMUST00000134788.8	673	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1284.12148957955	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGAGAAGTCCTGAATTC	NA	False	NA	NA	False	AAAAAG	-37	NA	9069538	8996198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9068347_9068495_9069464
transcript_35160.known	chr3	-	6317	6	FSM	ENSMUSG00000027506.16	ENSMUST00000120143.8	6317	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1105.06589848751	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCACTCTCTCCTTCCTC	NA	False	NA	NA	False	NA	NA	NA	9069783	8990652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_8996235_9000051_9000101_9009670_9009773_9012540_9012690_9018743_9018860_9069464
transcript_35168.known	chr3	+	987	4	FSM	ENSMUSG00000027533.11	ENSMUST00000029046.9	987	4	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	88.411914732499	241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTACAAATGGTGTGATTATA	NA	False	NA	NA	False	AATAAA	-14	NA	10077607	10081667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_10077779_10080030_10080204_10080531_10080634_10081126
transcript_35172.known	chr3	-	4185	9	FSM	ENSMUSG00000027531.17	ENSMUST00000065938.15	4185	9	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_8	38.1901083397259	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCATGTTTTTCTCACTT	NA	False	NA	NA	False	AGTAAA	-13	NA	10396499	10377015	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_10380362_10381162_10381315_10386671_10386781_10387963_10388073_10389111_10389158_10391166_10391272_10393404_10393539_10394002_10394069_10396381
transcript_35176.known	chr3	-	1100	8	FSM	ENSMUSG00000027531.17	ENSMUST00000191670.6	1100	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	136.151026587449	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGCTTTCTCTATGTTCCA	NA	False	NA	NA	False	NA	NA	NA	10396432	10379924	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_10380362_10381162_10381315_10387963_10388073_10389111_10389158_10391166_10391272_10393404_10393539_10394002_10394069_10396381
transcript_3518.nnic	chr10	-	1920	13	NNC	ENSMUSG00000019763.12	novel	3139	13	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_12	33.7279763533019	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTTCAGCTCTTAAT	5660	False	NA	-5	True	NA	NA	NA	4382390	4353170	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_4353502_4353873_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382230
transcript_3519.known	chr10	-	3139	13	FSM	ENSMUSG00000019763.12	ENSMUST00000042251.11	3139	13	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_3	17.5220099684178	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAACAAAA	5662	False	NA	NA	False	TTTAAA	-7	NA	4382388	4351914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_4353502_4353873_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4379076_4379172_4382265
transcript_35192.known	chr3	-	954	8	FSM	ENSMUSG00000039795.15	ENSMUST00000184644.8	954	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_7	262.492293375696	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACAGTCAGCTTTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	10416377	10405741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10413613_10416228
transcript_35193.known	chr3	-	936	8	FSM	ENSMUSG00000039795.15	ENSMUST00000108377.8	936	8	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_2	268.235352035545	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTGCTGTCTTAGAATT	NA	False	NA	NA	False	TTTAAA	-7	NA	10416373	10405678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_10405966_10406053_10406206_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412265_10413569_10413613_10416301
transcript_35197.nic	chr3	-	1846	8	NIC	ENSMUSG00000039795.15	novel	1610	8	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	120	junction_6	235.712813848219	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATTGCATTTGATCTAT	NA	False	NA	-3	True	AATAAA	-43	NA	10416408	10405014	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_10405966_10406053_10406210_10409860_10409983_10410994_10411087_10411169_10411298_10412224_10412472_10413569_10413613_10416301
transcript_35206.known	chr3	-	2288	8	FSM	ENSMUSG00000027534.17	ENSMUST00000029047.12	2288	8	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_2	14.2771402841703	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGGTGAGTTTCTTTAGT	NA	False	NA	1	True	ATTAAA	-20	NA	10505147	10483205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_10484284_10485256_10485377_10485799_10485937_10491222_10491293_10499417_10499567_10500505_10500593_10502870_10503345_10504974
transcript_3521.nnic	chr10	-	1753	12	NIC	ENSMUSG00000019763.12	novel	3139	13	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_11	34.497095338258	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCCTTTCAGCTCTTAAT	5697	False	NA	-5	True	NA	NA	NA	4382353	4353170	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_4353502_4353873_4353991_4357804_4357926_4360712_4360790_4361666_4361732_4363308_4363416_4364542_4364644_4367152_4367193_4368555_4368632_4372081_4372191_4377170_4377692_4382265
transcript_35211.known	chr3	-	2512	7	FSM	ENSMUSG00000027534.17	ENSMUST00000099223.11	2512	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	44.7837396086273	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGAGTGTTATCAGTGTC	NA	False	NA	2	True	AATAAA	-27	NA	10505162	10482876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_10484284_10485799_10485937_10491222_10491293_10499417_10499567_10500505_10500593_10502870_10503345_10504974
transcript_35220.known	chr3	+	6188	5	FSM	ENSMUSG00000027536.7	ENSMUST00000029049.7	6188	5	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_1	13.9709520076479	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAATGTATCCTATTTCTTT	NA	False	NA	1	True	ATTAAA	-16	NA	10431966	10460397	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_10432282_10450611_10450790_10452096_10452212_10454608_10454763_10454971
transcript_35223.known	chr3	+	2798	1	FSM	ENSMUSG00000095661.2	ENSMUST00000066794.9	2798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGAAAAATAGTAAG	NA	False	NA	NA	False	AATAAA	-32	NA	12920895	12923693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_12920900_12923700
transcript_35224.known	chr3	+	3391	19	FSM	ENSMUSG00000027550.15	ENSMUST00000091325.10	3391	19	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_6	18.5947689444845	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTGTTGATAATTGCACAC	NA	False	NA	NA	False	CATAAA	-26	NA	14598883	14631163	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605127_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14630792
transcript_35226.known	chr3	+	5638	19	FSM	ENSMUSG00000027550.15	ENSMUST00000169079.8	5638	19	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_7	12.3057750168542	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATATGCATCATTTCTATGT	NA	False	NA	20	True	AATAAA	-20	NA	14598882	14633361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605175_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14630792
transcript_35229.known	chr3	+	3359	19	FSM	ENSMUSG00000027550.15	ENSMUST00000108370.9	3359	19	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_18	19.4050394371038	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAGTTTTCTCTCTGAAA	NA	False	NA	NA	False	AATAAA	-27	NA	14598847	14637718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_14599083_14601058_14601265_14601533_14601600_14602269_14602438_14604688_14604865_14604970_14605175_14610555_14610753_14612306_14612455_14613167_14613317_14615310_14615516_14616447_14616588_14619363_14619566_14622248_14622435_14623310_14623486_14624287_14624452_14627183_14627393_14627483_14627622_14628018_14628155_14637463
transcript_35231.known	chr3	+	1751	8	FSM	ENSMUSG00000027552.15	ENSMUST00000165922.3	1751	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	75.6598186837988	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATCTTTGGGGGAATGT	1952	False	NA	29	True	AATAAA	-22	NA	14643730	14671368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_14644084_14652369_14652480_14653199_14653362_14666059_14666107_14667707_14667773_14668697_14668966_14670184_14670230_14670667
transcript_35232.known	chr3	-	559	4	FSM	ENSMUSG00000078784.9	ENSMUST00000108365.4	559	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	2488.45909483493	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676281	14671348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_14671469_14672236_14672354_14674600_14674718_14676076
transcript_35234.known	chr3	-	435	4	FSM	ENSMUSG00000078784.9	ENSMUST00000185384.7	435	4	0	0	0	0	multi-exon	FALSE	canonical	3	4849	junction_3	245.494512271773	1602	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTAAATCTTGTTAAT	NA	False	NA	0	True	AATAAA	-23	NA	14676345	14671343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_14671469_14672236_14672354_14674600_14674718_14676269
transcript_35235.known	chr3	-	1174	3	FSM	ENSMUSG00000078784.9	ENSMUST00000186870.7	1174	3	0	0	0	0	multi-exon	FALSE	canonical	3	4849	junction_2	211	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTATTTCTTTAAATCTTG	NA	False	NA	-5	True	AATAAA	-18	NA	14676321	14671348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_14672354_14674600_14674718_14676269
transcript_35236.known	chr3	-	278	3	FSM	ENSMUSG00000078784.9	ENSMUST00000185423.2	278	3	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_1	2412	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTTTATTTCTTTAAAT	NA	False	NA	-9	True	AATAAA	-14	NA	14676314	14671352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_14671469_14674600_14674718_14676269
transcript_35237.known	chr3	+	2299	7	FSM	ENSMUSG00000027555.9	ENSMUST00000029071.9	2299	7	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_4	16.344384016808	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTATCTTTTGGAAGAT	2179	False	NA	NA	False	AATAAA	-15	NA	14706786	14728062	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_14706906_14710096_14710295_14715718_14715838_14719943_14720040_14721288_14721352_14721968_14722125_14726514
transcript_35239.known	chr3	+	1788	7	FSM	ENSMUSG00000027562.13	ENSMUST00000029078.9	1788	7	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_4	9.4339811320566	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGGTGCCTGATTGTCT	NA	False	NA	11	True	AATAAA	-14	NA	14951487	14965830	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_14951847_14952893_14953092_14960081_14960201_14960594_14960688_14961759_14961823_14962973_14963130_14965030
transcript_3524.known	chr10	-	776	3	FSM	ENSMUSG00000019763.12	ENSMUST00000155172.8	776	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	63	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGGCCGCTGAAAGCATC	5755	False	NA	NA	False	AATGAA	-34	NA	4382295	4377242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_4377692_4379076_4379172_4382063
transcript_35241.known	chr3	+	4929	6	FSM	ENSMUSG00000047213.15	ENSMUST00000108346.5	4929	6	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_4	138.147167904377	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTAGTTCATTTACATTT	NA	False	NA	NA	False	ATTAAA	-18	NA	16237399	16271019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_16237685_16238085_16238111_16243641_16243728_16257350_16257384_16257989_16259589_16268118
transcript_35243.known	chr3	+	5102	5	FSM	ENSMUSG00000047213.15	ENSMUST00000108345.9	5102	5	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_3	82.6211232070831	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTTCTTTCCTTTTTA	NA	False	NA	14	True	AATAAA	-16	NA	16237375	16271201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_16237685_16238085_16238111_16243641_16243728_16257989_16259589_16268118
transcript_35246.known	chr3	-	2166	6	FSM	ENSMUSG00000039519.7	ENSMUST00000035625.7	2166	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	6.79411510058521	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAGTAAATGTTCCAAC	NA	False	NA	NA	False	ATTAAA	-11	NA	18297502	18126113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_18126918_18133468_18133645_18150686_18150894_18151367_18151959_18157864_18158002_18297251
transcript_35247.nnic	chr3	-	1696	5	NIC	ENSMUSG00000039519.7	novel	2166	6	NA	NA	-27	-321	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	6.28490254498827	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCATGGCAATCATTTCAG	NA	False	NA	NA	False	AATAAA	-22	NA	18297529	18126434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_18126918_18150686_18150894_18151367_18151959_18157864_18158002_18297251
transcript_35248.nnic	chr3	-	1794	8	NNC	ENSMUSG00000027599.10	novel	3673	7	NA	NA	-14	-2023	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_7	122.300399652258	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCTCTACAAAAAGCTGTA	NA	False	NA	NA	False	AAAAAG	-11	NA	19217243	19187588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_19188388_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19211947_19212078_19217073
transcript_35252.known	chr3	-	3673	7	FSM	ENSMUSG00000027599.10	ENSMUST00000029125.10	3673	7	0	0	0	0	multi-exon	TRUE	canonical	3	251	junction_6	16.1761140780679	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTGTATAATTACTAGACAG	NA	False	NA	NA	False	AATAAA	-23	NA	19217229	19185565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_19188388_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19217073
transcript_35253.nnic	chr3	-	1667	7	NNC	ENSMUSG00000027599.10	novel	3673	7	NA	NA	-35	-2023	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	91.40280204798	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCTCTACAAAAAGCTGTA	NA	False	NA	NA	False	AAAAAG	-11	NA	19217264	19187588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_19188370_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19217073
transcript_35255.nnic	chr3	-	1179	7	NNC	ENSMUSG00000027599.10	novel	3673	7	NA	NA	-35	-2511	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	91.40280204798	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGACTATGTATGCTGCAT	NA	False	NA	NA	False	AATAAA	-25	NA	19217264	19188076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_19188370_19189006_19189082_19189170_19189288_19198493_19198684_19203649_19203742_19211635_19211857_19217073
transcript_3526.known	chr10	-	1772	3	FSM	ENSMUSG00000019763.12	ENSMUST00000156940.8	1772	3	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_2	8	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACACTGAGTTCAAGTCC	5706	False	NA	NA	False	NA	NA	NA	4382344	4376093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_4377692_4379076_4379172_4382265
transcript_35262.known	chr3	+	2953	8	FSM	ENSMUSG00000027601.14	ENSMUST00000130645.8	2953	8	0	0	0	0	multi-exon	FALSE	canonical	3	831	junction_1	130.277568667669	329	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTATTTGTATATTTATCTC	NA	False	NA	50	True	AATAAA	-36	NA	19242273	19274981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_19242453_19254189_19254332_19260615_19260715_19265631_19265748_19269634_19269868_19271343_19271588_19272325_19272486_19273201
transcript_35272.known	chr3	-	4016	17	FSM	ENSMUSG00000027615.15	ENSMUST00000012580.13	4016	17	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_7	9.33324032691755	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGAGCATGTGTCCTTCAT	NA	False	NA	NA	False	NA	NA	NA	20089479	20050108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_20051194_20056486_20056578_20057388_20057596_20062978_20063087_20064963_20065153_20065552_20065739_20066860_20067095_20068186_20068368_20069989_20070172_20072974_20073084_20073966_20074122_20076921_20077004_20079894_20080085_20083123_20083210_20083310_20083483_20084477_20084970_20089212
transcript_35274.known	chr3	+	4955	25	FSM	ENSMUSG00000002428.13	ENSMUST00000002502.12	4955	25	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_12	28.4765680965168	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTGTCACTTAGTGACT	6938	False	NA	16	True	AATAAA	-20	NA	20111974	20172654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_20112172_20113062_20113271_20117981_20118149_20118729_20118864_20119485_20119584_20121509_20121585_20123129_20123322_20126532_20126629_20128992_20129060_20130654_20130749_20136915_20136996_20137074_20137120_20137913_20137995_20140259_20140358_20145640_20145785_20146841_20146981_20152243_20152380_20153939_20154120_20159804_20159930_20160513_20160693_20162161_20162288_20162918_20163032_20163468_20163650_20167519_20167601_20170735
transcript_35278.known	chr3	-	1698	7	FSM	ENSMUSG00000019528.19	ENSMUST00000178328.8	1698	7	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	8.93805845186128	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATCTTGGTTGTTTAAGTA	NA	False	NA	-5	True	AATAAA	-12	NA	20209260	20176250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_20177029_20179421_20179642_20192180_20192308_20204702_20204866_20205116_20205292_20206893_20207030_20209161
transcript_35281.known	chr3	+	8237	17	FSM	ENSMUSG00000027630.14	ENSMUST00000193734.6	8237	17	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_2	67.0932187333414	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGATGACAATTACTAATGT	NA	False	NA	11	True	ATTAAA	-23	NA	22130815	22270758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_22131119_22143576_22143687_22203105_22203173_22233366_22233470_22242529_22242676_22243931_22244155_22245078_22245212_22245555_22245698_22246183_22246248_22246333_22246432_22247271_22247333_22254483_22254606_22254753_22254829_22257260_22257389_22257990_22258157_22263675_22263778_22264564
transcript_35282.known	chr3	+	4209	16	FSM	ENSMUSG00000027630.14	ENSMUST00000202747.4	4209	16	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_1	26.4420540469575	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAATAATAAAAATAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	22130890	22266915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_22131119_22203105_22203173_22233366_22233470_22242529_22242676_22243931_22244155_22245078_22245212_22245555_22245698_22246183_22246248_22246333_22246432_22247271_22247333_22254483_22254606_22254753_22254829_22257260_22257389_22257990_22258157_22263675_22263778_22264564
transcript_35283.known	chr3	+	444	1	FSM	ENSMUSG00000057036.8	ENSMUST00000077389.8	444	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5095	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGCCACACCGGAGGTT	NA	False	NA	NA	False	NA	NA	NA	24387231	24387675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_24387200_24387700
transcript_35285.nic	chr3	-	4093	25	NIC	ENSMUSG00000027699.20	novel	4086	25	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	581	junction_24	64.5165784034529	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTATGTGTCCTGTCAT	1834	False	NA	NA	False	AATAAA	-20	NA	27208003	27151370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207851
transcript_35286.known	chr3	-	4086	25	FSM	ENSMUSG00000027699.20	ENSMUST00000108300.8	4086	25	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_24	111.161098998506	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTATGTGTCCTGTCAT	1827	False	NA	NA	False	AATAAA	-20	NA	27208010	27151370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_27152638_27154976_27155121_27156543_27156652_27169544_27169700_27171926_27172066_27176109_27176230_27176545_27176625_27178051_27178134_27181027_27181125_27181882_27181994_27184202_27184272_27185933_27186054_27191173_27191311_27192650_27192874_27192996_27193060_27193162_27193279_27193680_27193812_27195774_27195849_27199100_27199209_27200104_27200195_27200985_27201169_27202943_27203037_27203141_27203222_27204177_27204330_27207865
transcript_35289.known	chr3	+	4480	5	FSM	ENSMUSG00000027698.15	ENSMUST00000046515.15	4480	5	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_3	11.2333209693305	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGCCTCTGGCCCTTCCC	5568	False	NA	10	True	AATAAA	-17	NA	27237113	27299107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_27237365_27276816_27277046_27280221_27280292_27293680_27293853_27295349
transcript_35294.known	chr3	+	552	4	FSM	ENSMUSG00000039221.11	ENSMUST00000193168.2	552	4	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_2	3246.42750659175	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTATGGTTCATCAGTGT	NA	False	NA	17	True	AATAAA	-22	NA	28859658	28861571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_28859693_28860648_28860742_28860818_28861008_28861335
transcript_35296.known	chr3	+	525	4	FSM	ENSMUSG00000039221.11	ENSMUST00000194649.2	525	4	0	0	0	0	multi-exon	FALSE	canonical	3	3779	junction_1	1855.270390596	4308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGGTTCATCAGTGTGT	NA	False	NA	19	True	AATAAA	-24	NA	28859617	28861573	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_28859693_28860651_28860742_28860885_28861008_28861335
transcript_3530.nnic	chr10	+	2567	6	NNC	ENSMUSG00000061759.16	novel	2429	5	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	87.8990329867172	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCACTGGTTTTTATTTG	NA	False	NA	9	True	AATAAA	-18	NA	4382443	4405141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_4382712_4384827_4384934_4389491_4389737_4398308_4398424_4400646_4400810_4403471
transcript_35305.known	chr3	+	1908	1	FSM	ENSMUSG00000039221.11	ENSMUST00000195728.2	1908	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAAACATGTATGGTTCA	NA	False	NA	10	True	AATAAA	-15	NA	28859656	28861564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_28859700_28861600
transcript_35306.known	chr3	+	590	2	FSM	ENSMUSG00000039221.11	ENSMUST00000191691.2	590	2	0	0	0	0	multi-exon	FALSE	canonical	3	7992	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAACATGTATGGTTCAT	NA	False	NA	11	True	AATAAA	-16	NA	28860647	28861565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_28861008_28861335
transcript_35307.known	chr3	+	3474	8	FSM	ENSMUSG00000037730.14	ENSMUST00000195751.2	3474	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	49.6608908662808	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGACTCAACCCTTTTTA	8792	False	NA	NA	False	AATAAA	-35	NA	30656792	30672650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_30656845_30657652_30657820_30661185_30661980_30663133_30663294_30665589_30665769_30666617_30666702_30667700_30667788_30670699
transcript_35310.known	chr3	+	5555	8	FSM	ENSMUSG00000037730.14	ENSMUST00000192715.6	5555	8	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	33.260873624812	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCACTCACTATTTTGAC	8213	False	NA	NA	False	AATAAA	-16	NA	30656213	30674022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_30656845_30657652_30657950_30661185_30661980_30663133_30663294_30665589_30665769_30666617_30666702_30667700_30667788_30670699
transcript_35313.known	chr3	+	4775	7	FSM	ENSMUSG00000037730.14	ENSMUST00000195396.6	4775	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	75.410911382608	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCACTCACTATTTTGAC	8779	False	NA	NA	False	AATAAA	-16	NA	30656779	30674022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_30656845_30657652_30657820_30661185_30661980_30663133_30663294_30665589_30665769_30667700_30667788_30670699
transcript_35314.known	chr3	+	3394	7	FSM	ENSMUSG00000037730.14	ENSMUST00000047502.9	3394	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	66.6243615770955	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAAATCTGTGTGTATGTT	8785	False	NA	NA	False	AATAAA	-20	NA	30656785	30672517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_30656845_30657652_30657950_30661185_30661980_30663133_30663294_30665589_30665769_30667700_30667788_30670699
transcript_35315.nic	chr3	+	737	2	ISM	ENSMUSG00000037730.14	ENSMUST00000047502.9	3394	7	-4	14191	2	17	5prime_fragment	FALSE	canonical	3	207	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTATTTCAATTTTGCAA	8781	False	NA	NA	False	AAAAAG	-1	NA	30656781	30658326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_30656845_30657652
transcript_35316.known	chr3	+	1522	1	FSM	ENSMUSG00000037730.14	ENSMUST00000194587.2	1522	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAAGGCT	8787	False	NA	NA	False	ATTAAA	-33	NA	30656787	30658309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_30656800_30658300
transcript_35319.nnic	chr3	-	1829	11	NNC	ENSMUSG00000027702.8	novel	1891	11	NA	NA	34	0	at_least_one_novel_splicesite	TRUE	canonical	3	3	junction_7	118.182232167107	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	-18	True	AATAAA	-19	NA	30701984	30678415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696917_30697405_30697498_30697596_30697719_30699343_30699465_30701818
transcript_3532.known	chr10	+	2429	5	FSM	ENSMUSG00000061759.16	ENSMUST00000095893.11	2429	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	80.5927260985754	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCACTGGTTTTTATTTG	NA	False	NA	9	True	AATAAA	-18	NA	4382466	4405141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_4382712_4384827_4384934_4389491_4389737_4400646_4400810_4403471
transcript_35322.known	chr3	-	1891	11	FSM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_6	40.0710618776194	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	-18	True	AATAAA	-19	NA	30702018	30678415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_30679052_30684121_30684249_30685430_30685587_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
transcript_35328.nnic	chr3	-	1710	10	NIC	ENSMUSG00000027702.8	novel	1891	11	NA	NA	25	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_2	120.194287163187	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGTCTTGAGTTTAGAT	NA	False	NA	-18	True	AATAAA	-19	NA	30701993	30678415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_30679052_30684121_30684249_30685941_30686097_30688693_30688790_30690390_30690520_30696887_30696972_30697432_30697498_30697596_30697719_30699343_30699465_30701818
transcript_3533.nnic	chr10	+	2337	5	NNC	ENSMUSG00000061759.16	novel	5044	4	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	96.0234346396753	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCACTGGTTTTTATTT	NA	False	NA	8	True	AATAAA	-17	NA	4382600	4405140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_4382712_4384827_4384934_4389491_4389737_4400646_4400853_4403471
transcript_35330.known	chr3	+	2092	6	FSM	ENSMUSG00000027703.17	ENSMUST00000108265.3	2092	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	18.0177690072883	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATGAATTAATGAAAATAA	NA	False	NA	NA	False	AATAAA	-13	NA	30702034	30726448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_30702410_30704053_30705102_30709785_30709960_30713202_30713342_30714049_30714247_30726289
transcript_35331.nic	chr3	-	806	4	ISM	ENSMUSG00000027702.8	ENSMUST00000029252.8	1891	11	-38	18757	-38	-18757	5prime_fragment	FALSE	canonical	3	353	junction_2	40.185680147148	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTTGGTAAAATGGAATTG	NA	False	NA	NA	False	ATTAAA	-26	NA	30702056	30697172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_30697498_30697596_30697719_30699343_30699465_30701818
transcript_35333.nnic	chr3	+	837	3	NNC	ENSMUSG00000027703.17	novel	2387	8	NA	NA	10782	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	6.5	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTTGTGGGAAGAATG	NA	False	NA	5	True	NA	NA	NA	30712816	30726580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_30713166_30714049_30714247_30726289
transcript_35335.known	chr3	-	1586	9	FSM	ENSMUSG00000074653.11	ENSMUST00000126658.8	1586	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_7	9.37333318515884	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCGTGCTGCTTTGTAAAC	NA	False	NA	NA	False	NA	NA	NA	30753979	30733206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745450_30749635_30749780_30753847
transcript_35338.nnic	chr3	-	1837	9	NNC	ENSMUSG00000074653.11	novel	1586	9	NA	NA	-65	149	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_7	17.8985858379929	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAGGCTCATGATACCTTT	NA	False	NA	-5	True	NA	NA	NA	30754057	30733057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_30733533_30735094_30735263_30739007_30739176_30741563_30741732_30743287_30743456_30743998_30744167_30745305_30745474_30749635_30749780_30753847
transcript_3534.known	chr10	+	680	3	FSM	ENSMUSG00000061759.16	ENSMUST00000117489.8	680	3	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_2	3	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCAGCAAATAGAAATAATC	NA	False	NA	NA	False	AATAAA	-23	NA	4382619	4389973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_4382712_4384827_4384934_4389491
transcript_35343.known	chr3	-	705	2	FSM	ENSMUSG00000074653.11	ENSMUST00000130731.2	705	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAACTGCCTTCAGTTTG	NA	False	NA	-7	True	AGTAAA	-20	NA	30753959	30752270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_30752864_30753847
transcript_35345.known	chr3	+	3144	8	FSM	ENSMUSG00000051860.14	ENSMUST00000108262.10	3144	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.27140468220744	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCAGGCTCTTCTCTCTTT	7161	False	NA	NA	False	ATTAAA	-17	NA	30800488	30821323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_30800537_30805193_30805317_30807248_30807374_30808411_30808491_30810286_30810898_30812474_30812594_30816287_30816399_30819395
transcript_35349.nnic	chr3	+	1620	9	NNC	ENSMUSG00000027706.9	novel	3967	8	NA	NA	189	-288	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_8	221.180356270624	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTACTTATTATTTAGAC	NA	False	NA	12	True	AATAAA	-15	NA	30847212	30873893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648_30873086_30873724
transcript_35350.nnic	chr3	+	1707	9	NNC	ENSMUSG00000027706.9	novel	3967	8	NA	NA	-14	57	at_least_one_novel_splicesite	FALSE	canonical	3	89	junction_8	221.180356270624	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGCAAGCCATTGGACTC	NA	False	NA	6	True	AATAAA	-16	NA	30847470	30874238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648_30873086_30873724
transcript_35351.known	chr3	+	3967	8	FSM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_4	88.1522338147515	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACGCAGTAGTGATGGATT	NA	False	NA	NA	False	AATAAA	-21	NA	30847023	30875412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970_30864176_30864593_30864687_30866444_30866506_30868382_30868503_30872648
transcript_35355.nic	chr3	+	924	4	ISM	ENSMUSG00000027706.9	ENSMUST00000029256.9	3967	8	-26	11268	-26	8454	5prime_fragment	FALSE	canonical	3	760	junction_3	45.4923681023043	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGATGGTGAAAAGGAAG	NA	False	NA	90	True	AAAAAG	-15	NA	30846997	30864144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_30847533_30854279_30854389_30855208_30855315_30863970
transcript_35356.known	chr3	+	558	2	FSM	ENSMUSG00000027706.9	ENSMUST00000195072.2	558	2	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGACAATTTGCTGTTC	8681	False	NA	-51	True	GGGGCT	-28	NA	30872999	30874181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_30873086_30873709
transcript_35358.nic	chr3	+	1909	5	NIC	ENSMUSG00000037661.15	novel	1977	4	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_4	111.904814463007	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910088	30951339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_30910207_30931383_30931482_30944090_30944191_30948277_30948390_30949858
transcript_35359.nic	chr3	+	2138	5	NIC	ENSMUSG00000037661.15	novel	1977	4	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_4	102.806857747915	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910088	30951339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_30910207_30931383_30931711_30944090_30944191_30948277_30948390_30949858
transcript_35361.nic	chr3	+	2000	4	NIC	ENSMUSG00000037661.15	novel	2139	4	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_1	76.6130247122221	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910073	30951339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_30910395_30931383_30931482_30944090_30944191_30949858
transcript_35362.known	chr3	+	2139	4	FSM	ENSMUSG00000037661.15	ENSMUST00000108258.8	2139	4	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	77.1895214535122	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910163	30951339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_30910395_30931383_30931711_30944090_30944191_30949858
transcript_35363.known	chr3	+	346	4	FSM	ENSMUSG00000037661.15	ENSMUST00000194979.6	346	4	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	25.3026129524645	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTCAAAGAACTGCTCTCT	NA	False	NA	NA	False	ACTAAA	-16	NA	30910141	30949941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_30910207_30931383_30931482_30944090_30944191_30949858
transcript_35364.known	chr3	+	1977	4	FSM	ENSMUSG00000037661.15	ENSMUST00000046748.13	1977	4	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	83.6341238171756	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910137	30951339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_30910207_30931383_30931711_30944090_30944191_30949858
transcript_35366.known	chr3	+	1689	3	FSM	ENSMUSG00000037661.15	ENSMUST00000166278.7	1689	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	125	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTTATTTGTTTTTTGT	NA	False	NA	34	True	AATAAA	-19	NA	30910098	30951341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_30910207_30931383_30931482_30949858
transcript_35367.known	chr3	+	1916	3	FSM	ENSMUSG00000037661.15	ENSMUST00000108259.8	1916	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	143	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTATTTGTTTTTT	NA	False	NA	32	True	AATAAA	-45	NA	30910098	30951339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_30910207_30931383_30931711_30949858
transcript_35369.nic	chr3	-	990	3	ISM	ENSMUSG00000037652.16	ENSMUST00000099163.5	2808	9	-2	31980	-2	-2714	5prime_fragment	FALSE	canonical	3	8	junction_2	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTTAAATTAATATT	NA	False	NA	NA	False	NA	NA	NA	31023566	31015249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_31016033_31019921_31020085_31023522
transcript_35371.known	chr3	-	7797	6	FSM	ENSMUSG00000027663.13	ENSMUST00000029199.11	7797	6	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_5	21.7568380055559	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTTCGGTTCTGAGTCGGG	NA	False	NA	0	True	AATAAA	-26	NA	32419827	32388940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_32395845_32397482_32397584_32397700_32397868_32399606_32399730_32415038_32415366_32419652
transcript_35372.nnic	chr3	-	2326	6	NNC	ENSMUSG00000027663.13	novel	7797	6	NA	NA	-47	-5430	intron_retention	FALSE	canonical	3	11	junction_5	45.5692879031481	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAGACTGATGGAGTGTTA	NA	False	NA	-27	True	AATAAA	-20	NA	32419874	32394374	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_32395845_32397482_32397584_32397700_32397868_32399606_32399730_32415038_32415366_32419736
transcript_35377.known	chr3	+	2211	7	FSM	ENSMUSG00000027667.14	ENSMUST00000193287.6	2211	7	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	65.8012580089131	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGTCATAGTTACCACT	2906	False	NA	112	True	AATATA	-32	NA	32564407	32574982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_32564739_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
transcript_35378.nnic	chr3	+	1791	7	NIC	ENSMUSG00000027667.14	novel	2211	7	NA	NA	15	0	intron_retention	FALSE	canonical	0	0	junction_1	86.1344233677157	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	3197	False	NA	22	True	AATAAA	-22	NA	32564698	32574892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_32564739_32567188_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
transcript_35379.known	chr3	+	1988	7	FSM	ENSMUSG00000027667.14	ENSMUST00000191783.6	1988	7	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	46.6455309280059	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	3182	False	NA	22	True	AATAAA	-22	NA	32564683	32574892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_32564882_32567149_32567342_32568532_32568604_32569432_32569502_32571177_32571289_32573258_32573394_32573680
transcript_35380.nic	chr3	+	1790	6	NIC	ENSMUSG00000027667.14	novel	2211	7	NA	NA	-14	0	intron_retention	FALSE	canonical	3	10	junction_3	101.887388817262	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGCAAGCTGAAATACTTT	3168	False	NA	22	True	AATAAA	-22	NA	32564669	32574892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_32564739_32567149_32567342_32568532_32568604_32571177_32571289_32573258_32573394_32573680
transcript_35386.known	chr3	+	4562	18	FSM	ENSMUSG00000027668.14	ENSMUST00000091257.11	4562	18	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_6	42.8432404539521	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTTATCTCAGTTAGTGA	NA	False	NA	NA	False	AATAAA	-29	NA	32583613	32633388	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_32583845_32586046_32586166_32588386_32588523_32592418_32592582_32596954_32597080_32598215_32598325_32600736_32600845_32608303_32608458_32609622_32609691_32615613_32615736_32617160_32617288_32617523_32617629_32617941_32618045_32618224_32618455_32622405_32622559_32623636_32623834_32628382_32628518_32631211
transcript_35390.known	chr3	-	5997	10	FSM	ENSMUSG00000027669.15	ENSMUST00000155737.8	5997	10	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_8	7.61253028131584	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCACTGTACCTTGTTTTA	NA	False	NA	NA	False	AATAAA	-16	NA	32670734	32634480	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_32639376_32641709_32641927_32643857_32644060_32644145_32644213_32645259_32645423_32647306_32647371_32650425_32650533_32652274_32652314_32656193_32656290_32670587
transcript_35399.known	chr3	+	2010	14	FSM	ENSMUSG00000027671.15	ENSMUST00000029214.14	2010	14	0	0	0	0	multi-exon	FALSE	canonical	3	1234	junction_9	101.670310666418	1756	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTGCTGGATTTGTCTGTG	NA	False	NA	23	True	AATAAA	-20	NA	32762655	32781122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_32763030_32766016_32766094_32766249_32766425_32768665_32768767_32769564_32769663_32772179_32772275_32772516_32772624_32772715_32772806_32774049_32774112_32774334_32774450_32774583_32774665_32776768_32776865_32779395_32779483_32780670
transcript_3541.known	chr10	-	1940	5	FSM	ENSMUSG00000019773.8	ENSMUST00000019907.8	1940	5	0	0	0	0	multi-exon	FALSE	canonical	3	762	junction_1	15.5623744974859	328	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGATGTGTGCAGGTTTTT	NA	False	NA	-9	True	AATAAA	-45	NA	5755600	5749159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_5749823_5750255_5750436_5751151_5751243_5751868_5752533_5755258
transcript_35421.known	chr3	-	3364	7	FSM	ENSMUSG00000037531.9	ENSMUST00000043966.8	3364	7	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_5	35.1931180141168	353	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATTCTCAAAAGTTCCT	NA	False	NA	NA	False	TATAAA	-14	NA	32791296	32779545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_32781867_32782580_32782677_32784229_32784361_32785308_32785406_32787737_32787799_32788256_32788409_32790790
transcript_35422.known	chr3	+	1079	6	FSM	ENSMUSG00000027673.13	ENSMUST00000127477.8	1079	6	0	0	0	0	multi-exon	FALSE	canonical	3	2813	junction_1	66.9226419084005	2850	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTTGCTTTACTTTTGG	NA	False	NA	10	True	AATAAA	-24	NA	32791138	32805715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_32791355_32799002_32799092_32800596_32800664_32801876_32801939_32802609_32802717_32805177
transcript_35426.known	chr3	+	1457	1	FSM	ENSMUSG00000027671.15	ENSMUST00000194226.2	1457	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACCAA	NA	False	NA	NA	False	NA	NA	NA	32762698	32764155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_32762700_32764200
transcript_35427.known	chr3	+	4913	11	FSM	ENSMUSG00000027677.18	ENSMUST00000117915.8	4913	11	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	63.6361532464055	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAATATCTACCTCCAGT	NA	False	NA	NA	False	AATAAA	-33	NA	33854361	33866440	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33858148_33858221_33858569_33858690_33858788_33858912_33860964_33861083_33861987_33862098_33862834
transcript_35428.nic	chr3	-	1857	11	ISM	ENSMUSG00000027676.12	ENSMUST00000029222.8	3606	20	11	12795	11	-571	5prime_fragment	FALSE	canonical	2	2	junction_3	3.52278299076171	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAGGCTAAGACACTTGT	NA	False	NA	NA	False	NA	NA	NA	33898439	33879305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_33879705_33880603_33880799_33884173_33884307_33884805_33884910_33886676_33886869_33890864_33890994_33891088_33891182_33891954_33892114_33893226_33893374_33895217_33895338_33898253
transcript_35429.known	chr3	+	9661	10	FSM	ENSMUSG00000027677.18	ENSMUST00000099153.10	9661	10	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_6	17.9285275124711	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCCAGCTGTTCCCTCAA	NA	False	NA	NA	False	AATAAA	-24	NA	33853980	33869009	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964
transcript_35430.known	chr3	+	2724	10	FSM	ENSMUSG00000027677.18	ENSMUST00000200271.5	2724	10	0	0	0	0	multi-exon	FALSE	canonical	2	24	junction_1	52.1578799841831	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATCTCAAGTGATAATTC	NA	False	NA	NA	False	AGTAAA	-10	NA	33854339	33862193	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_33854824_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964
transcript_35431.known	chr3	+	1711	9	FSM	ENSMUSG00000027677.18	ENSMUST00000196975.5	1711	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	55.9741848980403	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTGTGTCCTGTTTAC	NA	False	NA	NA	False	NA	NA	NA	33854411	33861646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33858148_33858221_33858569_33858690_33858788_33858912_33860964
transcript_35432.known	chr3	+	2684	12	FSM	ENSMUSG00000027677.18	ENSMUST00000108210.9	2684	12	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_10	47.3543002489332	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGTGGGGTAGAATATATG	NA	False	NA	-75	True	AAGAAA	-39	NA	33854399	33864093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_33854586_33855104_33855230_33855339_33855540_33857007_33857093_33857223_33857354_33857598_33857755_33858148_33858221_33858569_33858690_33858788_33858912_33860964_33861083_33861987_33862098_33862834
transcript_35433.known	chr3	-	3606	20	FSM	ENSMUSG00000027676.12	ENSMUST00000029222.8	3606	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3.55720952604543	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAATGTTTCTTCTCTGA	NA	False	NA	NA	False	AATAAA	-17	NA	33898450	33866510	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_33867350_33868338_33868416_33868501_33868679_33868803_33868945_33869560_33869668_33870060_33870221_33870976_33871101_33873956_33874166_33875525_33875664_33879539_33879705_33880603_33880799_33884173_33884307_33884805_33884910_33886676_33886869_33890864_33890994_33891088_33891182_33891954_33892114_33893226_33893374_33895217_33895338_33898253
transcript_35448.known	chr3	+	2129	17	FSM	ENSMUSG00000027680.16	ENSMUST00000197694.5	2129	17	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_15	164.164884719601	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTTTGTTTTCAAAAT	4859	False	NA	20	True	ATTAAA	-23	NA	34074256	34123494	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
transcript_3545.known	chr10	-	2588	7	FSM	ENSMUSG00000019774.9	ENSMUST00000019908.9	2588	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	9.49853789918334	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAATTAACCATTATGGT	NA	False	NA	NA	False	AATAAA	-15	NA	5773910	5761886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_5763407_5764040_5764178_5765551_5765670_5767448_5767613_5768800_5768985_5770024_5770105_5773525
transcript_35450.known	chr3	+	2459	17	FSM	ENSMUSG00000027680.16	ENSMUST00000001620.13	2459	17	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_14	394.615947591769	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTTATTTTGTTTTCAA	4694	False	NA	17	True	ATTAAA	-20	NA	34074091	34123491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34119122_34119204_34122309_34122402_34123065
transcript_3546.known	chr10	-	8107	5	FSM	ENSMUSG00000019775.18	ENSMUST00000131996.8	8107	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.433012701892219	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGGTGTCTTAAAAGTG	NA	False	NA	NA	False	AATAAA	-15	NA	5872386	5775662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_5783142_5791271_5791507_5792535_5792626_5812518_5812663_5872227
transcript_35461.known	chr3	+	3014	16	FSM	ENSMUSG00000027680.16	ENSMUST00000200392.5	3014	16	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_15	191.49767622611	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGGTAAGCAGTTTTTAATA	4859	False	NA	15	True	ATTAAA	-16	NA	34074256	34124471	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112231_34112317_34112381_34115976_34116181_34118267_34118469_34123065
transcript_35467.nic	chr3	+	2287	16	NIC	ENSMUSG00000027680.16	novel	2459	17	NA	NA	-64	0	intron_retention	FALSE	canonical	3	754	junction_14	169.31149465474	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTTATTTTGTTTTCAA	4785	False	NA	17	True	ATTAAA	-20	NA	34074182	34123491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34122309_34122402_34123065
transcript_3547.known	chr10	+	114	1	FSM	ENSMUSG00000081926.2	ENSMUST00000121411.2	114	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	30	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGACTCTGGCCAATGCCC	2119	False	NA	NA	False	NA	NA	NA	6988660	6988774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_6988700_6988800
transcript_35476.known	chr3	+	2127	15	FSM	ENSMUSG00000027680.16	ENSMUST00000198051.5	2127	15	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_14	198.096296929405	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTATTTTGTTTTCAAAAT	4856	False	NA	20	True	ATTAAA	-23	NA	34074253	34123494	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_34074313_34093675_34093729_34095211_34095306_34100180_34100253_34100585_34100735_34101114_34101209_34101780_34101898_34103301_34103473_34104223_34104303_34108370_34108481_34110478_34110566_34112172_34112381_34115976_34116181_34118267_34118469_34123065
transcript_3548.known	chr10	-	3447	13	FSM	ENSMUSG00000015202.14	ENSMUST00000015346.12	3447	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_10	5.32812245438193	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTGGGATTTTATGAATT	NA	False	NA	-4	True	AATAAA	-11	NA	7162237	7069062	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_7070587_7076094_7076185_7076634_7076844_7079022_7079148_7084521_7084669_7085047_7085117_7088354_7088415_7090318_7090439_7092960_7093003_7102863_7102952_7104282_7104486_7110643_7110808_7161631
transcript_35494.known	chr3	-	659	6	FSM	ENSMUSG00000027679.14	ENSMUST00000108195.10	659	6	0	0	0	0	multi-exon	FALSE	canonical	3	3089	junction_3	262.703330774469	1095	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTTCATTGCTGACTTA	NA	False	NA	71	True	TATAAA	-1	NA	34135470	34131427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232_34134307_34134379_34134432_34135334
transcript_35497.known	chr3	-	1695	5	FSM	ENSMUSG00000027679.14	ENSMUST00000117223.4	1695	5	0	0	0	0	multi-exon	FALSE	canonical	3	3089	junction_2	271.507366382572	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCCATTAGTCTACTTATGA	NA	False	NA	-84	True	AATAAA	-20	NA	34135411	34131582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_34132995_34133353_34133434_34134232_34134307_34134379_34134432_34135334
transcript_35498.known	chr3	-	551	5	FSM	ENSMUSG00000027679.14	ENSMUST00000120805.8	551	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_4	1441.31155549381	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTAAGGATTTCAAGAATT	NA	False	NA	26	True	NA	NA	NA	34135459	34131472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_34131674_34132923_34132995_34133353_34133434_34134232_34134307_34135334
transcript_3550.known	chr10	-	2607	9	FSM	ENSMUSG00000019795.18	ENSMUST00000161123.8	2607	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	305.06638621782	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGATCCTTGGTAGTCA	NA	False	NA	0	True	AATAAA	-20	NA	7539028	7505136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524230_7524425_7524814_7524920_7538838
transcript_35503.known	chr3	+	2057	1	FSM	ENSMUSG00000074637.8	ENSMUST00000099151.6	2057	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	351	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGCCTGAGTCTTTCATT	4607	False	NA	19	True	AATAAA	-24	NA	34704553	34706610	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_34704600_34706600
transcript_35504.known	chr3	-	675	4	FSM	ENSMUSG00000105153.5	ENSMUST00000198364.2	675	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGTTTGTTAAGCTCCTTTA	NA	False	NA	NA	False	ATTAAA	-14	NA	34770811	34763771	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_34764079_34764315_34764508_34768115_34768187_34770706
transcript_35505.nnic	chr3	-	1200	7	NNC	ENSMUSG00000105662.5	novel	3135	19	NA	NA	437	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	14.0564338768172	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATTGGTTAGACTCCAAT	NA	False	NA	NA	False	AATAAA	-15	NA	35691277	35672771	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_35673025_35673834_35673956_35677231_35677418_35678500_35678611_35681522_35681682_35682985_35683124_35691044
transcript_35506.nnic	chr3	-	1141	6	NIC	ENSMUSG00000105662.5	novel	3135	19	NA	NA	310	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	13.8188277360998	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTATTGGTTAGACTCCAAT	NA	False	NA	NA	False	AATAAA	-15	NA	35691404	35672771	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_35673025_35673834_35673956_35678500_35678611_35681522_35681682_35682985_35683124_35691044
transcript_35507.known	chr3	+	4868	30	FSM	ENSMUSG00000037400.18	ENSMUST00000029257.15	4868	30	0	0	0	0	multi-exon	FALSE	canonical	2	274	junction_18	53.5097310762941	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTTGTTGCATGTTATC	NA	False	NA	11	True	AATAAA	-17	NA	35808282	35910425	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_35808560_35832173_35832291_35836660_35836751_35838655_35838737_35842235_35842344_35842574_35842704_35843706_35843811_35849907_35849956_35852742_35852808_35854632_35854715_35859882_35860034_35860916_35861115_35863505_35863746_35864269_35864446_35864794_35864864_35866211_35866286_35866361_35866466_35868192_35868375_35874057_35874262_35881093_35881248_35882749_35882853_35885514_35885661_35887069_35887130_35888443_35888572_35889387_35889527_35891107_35891174_35891634_35891739_35893197_35893364_35903582_35903714_35909253
transcript_35511.known	chr3	-	2455	19	FSM	ENSMUSG00000027709.10	ENSMUST00000029259.10	2455	19	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_8	26.6884748788316	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGAGCTGTAGTTTTTTT	NA	False	NA	NA	False	TATAAA	-28	NA	36054827	36013981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_36014279_36015081_36015154_36017733_36017842_36018475_36018614_36022572_36022623_36026626_36026714_36028222_36028440_36029943_36030054_36030809_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044968_36048064_36048161_36049929_36050067_36051673_36051721_36054629
transcript_35518.nic	chr3	-	1660	11	ISM	ENSMUSG00000027709.10	ENSMUST00000029259.10	2455	19	-23	16567	-23	-604	5prime_fragment	FALSE	canonical	3	213	junction_9	16.2185079461706	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACCCAAACCTATAAATCTC	NA	False	NA	NA	False	NA	NA	NA	36054850	36030548	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_36030994_36033071_36033200_36037881_36037964_36039130_36039243_36043992_36044115_36044197_36044346_36044845_36044968_36048064_36048161_36049929_36050067_36051673_36051721_36054629
transcript_35524.known	chr3	-	4980	7	FSM	ENSMUSG00000027708.15	ENSMUST00000108182.10	4980	7	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_3	19.8445346520284	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCTTTTATTGCTTCCAT	NA	False	NA	0	True	TATAAA	-17	NA	35987621	35946253	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_35949849_35951612_35951710_35951941_35952025_35970368_35970500_35973149_35973319_35975119_35975337_35986933
transcript_35529.nic	chr3	-	2718	6	NIC	ENSMUSG00000027708.15	novel	4980	7	NA	NA	-66	-160	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	59.8351067518058	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGATATTTGTGTGTGGC	NA	False	NA	-5	True	CATAAA	-17	NA	35987051	35947814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_35949849_35951612_35951710_35951941_35952025_35973149_35973319_35975119_35975337_35986933
transcript_35530.nic	chr3	-	1091	6	NIC	ENSMUSG00000027708.15	novel	4980	7	NA	NA	-2	81	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	59.8351067518058	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACAATTTATAAAAACTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	35986987	35949377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_35949849_35951612_35951710_35951941_35952025_35973149_35973319_35975119_35975337_35986933
transcript_35531.known	chr3	+	3930	18	FSM	ENSMUSG00000027710.15	ENSMUST00000011492.15	3930	18	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_2	13.4755962948483	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCCTTTTTACCAAGGA	NA	False	NA	5	True	NA	NA	NA	36120127	36147002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_36120420_36123858_36123953_36127655_36127758_36128498_36128606_36129391_36129493_36130124_36130204_36130870_36131046_36132586_36132661_36134369_36134446_36135959_36136031_36136257_36136378_36139562_36139692_36141868_36141949_36142636_36142764_36142963_36143042_36143480_36143610_36144230_36144304_36144979
transcript_35534.known	chr3	+	6689	4	FSM	ENSMUSG00000033883.12	ENSMUST00000197653.5	6689	4	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	1.4142135623731	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTACTATTATTTTATG	NA	False	NA	28	True	AATAAA	-19	NA	36205165	36224491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_36205345_36213670_36213798_36216780_36216877_36218204
transcript_35537.known	chr3	-	1731	13	FSM	ENSMUSG00000027712.14	ENSMUST00000029266.14	1731	13	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	8.69985632065266	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTAGGTTTGTGTTT	NA	False	NA	3	True	AATAAA	-21	NA	36530043	36503071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_36503556_36504460_36504584_36504786_36504846_36506335_36506432_36507619_36507714_36511141_36511199_36511607_36511688_36514591_36514683_36516029_36516144_36518116_36518212_36519399_36519485_36529578_36529610_36529721
transcript_35539.known	chr3	+	1617	12	FSM	ENSMUSG00000027714.12	ENSMUST00000029269.12	1617	12	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_11	43.5980892749872	284	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATCTGAGAGCCGAATGAGT	NA	False	NA	15	True	AATAAA	-23	NA	36606754	36619876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_36606901_36607183_36607279_36607954_36608075_36608188_36608292_36608786_36608925_36609630_36609714_36611011_36611145_36615251_36615341_36616166_36616314_36617221_36617407_36619366_36619446_36619577
transcript_35543.known	chr3	-	2965	8	FSM	ENSMUSG00000027715.10	ENSMUST00000029270.10	2965	8	0	0	0	0	multi-exon	FALSE	canonical	3	973	junction_1	54.4767315990441	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCATTTGGTGGGCTGTGTG	NA	False	NA	-7	True	AATAAA	-21	NA	36626299	36619013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_36620432_36620689_36620824_36621148_36621263_36621872_36622081_36622736_36622961_36623128_36623239_36624884_36625129_36625786
transcript_35545.known	chr3	-	2687	19	FSM	ENSMUSG00000037325.11	ENSMUST00000108156.9	2687	19	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_12	6.84754619472471	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTGTCTTTATATATT	NA	False	NA	NA	False	ATTAAA	-21	NA	36667626	36627290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_36627772_36629442_36629567_36629693_36629798_36629891_36630002_36632544_36632710_36636774_36636915_36644800_36644867_36646513_36646589_36648516_36648710_36652414_36652518_36653487_36653573_36656977_36657109_36658554_36658672_36659832_36659906_36661669_36661857_36664328_36664505_36664714_36664778_36666160_36666227_36667398
transcript_35548.known	chr3	-	1288	4	FSM	ENSMUSG00000037325.11	ENSMUST00000129671.2	1288	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	6.97614984548545	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTGATGGCCACTAATG	NA	False	NA	NA	False	NA	NA	NA	36667538	36663485	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_36664505_36664714_36664778_36666160_36666227_36667398
transcript_3555.known	chr10	+	1286	8	FSM	ENSMUSG00000040034.16	ENSMUST00000040135.9	1286	8	0	0	0	0	multi-exon	FALSE	canonical	3	1090	junction_2	84.4680835751418	705	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAATGTTGGCTTGCTGCT	NA	False	NA	20	True	AATAAA	-20	NA	7543266	7554645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_7543446_7543765_7543889_7545316_7545395_7546702_7546884_7549348_7549485_7550769_7550922_7552003_7552127_7554331
transcript_35550.known	chr3	+	2916	17	FSM	ENSMUSG00000027722.15	ENSMUST00000198968.2	2916	17	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_15	114.842266146876	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGTTTTATCTTGTGCTT	NA	False	NA	11	True	AATAAA	-20	NA	37474460	37633245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_37474650_37478659_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37584131_37584169_37632900
transcript_35551.known	chr3	+	2890	16	FSM	ENSMUSG00000027722.15	ENSMUST00000029277.13	2890	16	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	86.3305276249369	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAGTTTTATCTTGTGCTT	NA	False	NA	11	True	AATAAA	-20	NA	37474446	37633245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_37474650_37478662_37478785_37480237_37480396_37484194_37484254_37485781_37486427_37487286_37487417_37487787_37487845_37490790_37490915_37493249_37493506_37502556_37502712_37505791_37506002_37510923_37510978_37512469_37512550_37518680_37518808_37582306_37582472_37632900
transcript_35555.known	chr3	-	1064	5	FSM	ENSMUSG00000045031.19	ENSMUST00000102955.11	1064	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	3.41869858279434	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAGTATCTTCTGGTAGT	NA	False	NA	NA	False	AATAAA	-21	NA	37366595	37362770	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_37363331_37363493_37363632_37364085_37364215_37364441_37364589_37366505
transcript_35558.known	chr3	-	1070	5	FSM	ENSMUSG00000050174.16	ENSMUST00000099130.9	1070	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	15.5804364508829	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTGTAGCTCTAATCCT	NA	False	NA	-14	True	AATAAA	-15	NA	37473739	37459134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_37459641_37463656_37463712_37466508_37466565_37470849_37471054_37473490
transcript_35559.known	chr3	-	1264	5	FSM	ENSMUSG00000050174.16	ENSMUST00000146324.8	1264	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	11.0792599030802	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGTTTTTCTCTACTGA	NA	False	NA	62	True	TATAAA	-29	NA	37474335	37459058	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_37459644_37463656_37463712_37466508_37466565_37470849_37471054_37473971
transcript_35560.known	chr3	-	1808	4	FSM	ENSMUSG00000045031.19	ENSMUST00000071400.13	1808	4	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_2	8.9566858950296	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTCAGTATCTTATGCT	NA	False	NA	NA	False	TATAAA	-26	NA	37366595	37361897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_37363331_37363493_37363632_37364441_37364589_37366505
transcript_35561.known	chr3	-	762	4	FSM	ENSMUSG00000045031.19	ENSMUST00000075537.7	762	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	11.7851130197758	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAACAATCTGAAAATG	NA	False	NA	NA	False	AATAAA	-31	NA	37366569	37362908	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_37363331_37364085_37364215_37364441_37364589_37366505
transcript_35564.nnic	chr3	-	805	3	NIC	ENSMUSG00000045031.19	novel	1808	4	NA	NA	-13	-5	combination_of_known_splicesites	FALSE	canonical	3	6	junction_1	10	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTTAAGTATCTTCTG	NA	False	NA	NA	False	AATAAA	-16	NA	37366608	37362775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_37363331_37364441_37364589_37366505
transcript_35565.known	chr3	+	2433	2	FSM	ENSMUSG00000051444.10	ENSMUST00000057975.8	2433	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAACTGCCATTCTGTTTTTT	1251	False	NA	7	True	AATAAA	-19	NA	37366702	37375599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_37366735_37373198
transcript_35566.known	chr3	+	425	1	FSM	ENSMUSG00000100755.2	ENSMUST00000116115.3	425	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29725	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCATAAAATTTGACAATGG	7664	False	NA	NA	False	AAGAAA	-12	NA	37768888	37769313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_37768900_37769300
transcript_35568.nic	chr3	+	1168	2	ISM	ENSMUSG00000060798.8	ENSMUST00000091186.7	6387	16	-13	50157	-13	1	5prime_fragment	FALSE	canonical	3	119	junction_1	0	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGCACTTGAGAACACC	NA	False	NA	2	True	AATAAA	-18	NA	40594902	40609047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_40595159_40608135
transcript_35569.known	chr3	+	2128	6	FSM	ENSMUSG00000069041.9	ENSMUST00000091184.9	2128	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	1.93907194296653	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAGGAAAAAATAACTTAGC	NA	False	NA	NA	False	AATAAA	-12	NA	40663284	40680527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_40663657_40670945_40671074_40674920_40675039_40675936_40676092_40677055_40677182_40679298
transcript_35570.known	chr3	+	3320	16	FSM	ENSMUSG00000025758.11	ENSMUST00000203895.3	3320	16	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	89.82788480694	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGTGTAAATAATGTATT	7808	False	NA	NA	False	AAAACA	-16	NA	40754476	40771186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_40754719_40755434_40755531_40756219_40756316_40756392_40756508_40759446_40760356_40760921_40761023_40763181_40763544_40764711_40764817_40765096_40765200_40765668_40765819_40766314_40766449_40766528_40766621_40767165_40767311_40767900_40768027_40769416_40769524_40770749
transcript_35575.known	chr3	+	1599	5	FSM	ENSMUSG00000025758.11	ENSMUST00000203320.2	1599	5	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_3	14.0956553590104	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGACTAATAGCTGCATGTA	7816	False	NA	NA	False	TTTAAA	-26	NA	40754484	40760500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_40754719_40755434_40755531_40756219_40756316_40756392_40756508_40759442
transcript_35577.known	chr3	+	3277	13	FSM	ENSMUSG00000037818.17	ENSMUST00000108077.10	3277	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	7.57554545157567	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAACAAACAAAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	40848756	40891572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_40848879_40859320_40859429_40860306_40860392_40864937_40865039_40871120_40871200_40871306_40871392_40873812_40873841_40877847_40877987_40884571_40884662_40885315_40885418_40887958_40888338_40889301_40889465_40889776
transcript_35579.known	chr3	-	3151	12	FSM	ENSMUSG00000025759.12	ENSMUST00000026859.11	3151	12	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	6.38308715692435	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATATGAAGAGGACCTGAAT	NA	False	NA	16	True	AATAAA	-34	NA	40801320	40772537	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_40774156_40776297_40776546_40776629_40776734_40778261_40778397_40781308_40781418_40785058_40785115_40786447_40786593_40788378_40788493_40789603_40789845_40791523_40791568_40793848_40793941_40801075
transcript_35585.known	chr3	-	1032	3	FSM	ENSMUSG00000097583.3	ENSMUST00000181813.2	1032	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAATAAAAGGAGAAAAGG	6729	False	NA	NA	False	NA	NA	NA	40848558	40840331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_40841144_40841989_40842034_40848382
transcript_35586.known	chr3	+	1263	1	FSM	ENSMUSG00000107741.3	ENSMUST00000203124.2	1263	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATATTCTTCCTGTGTTA	472	False	NA	NA	False	AATAAA	-17	NA	40801254	40802517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_40801300_40802500
transcript_35587.known	chr3	+	1705	10	FSM	ENSMUSG00000025762.17	ENSMUST00000191805.7	1705	10	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_4	8.10273540155757	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTGTTTTTAAGGGCTT	NA	False	NA	13	True	AATAAA	-26	NA	40905065	40932228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_40905120_40916042_40916102_40916603_40916664_40918402_40918578_40921799_40921941_40924325_40924470_40924885_40925052_40926795_40926941_40930935_40931111_40931642
transcript_35588.nic	chr3	+	1884	7	ISM	ENSMUSG00000025762.17	ENSMUST00000191805.7	1705	10	13336	-351	2335	351	3prime_fragment	FALSE	canonical	3	71	junction_1	8.71779788708135	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAGTTAGTATGAAGAATA	NA	False	NA	NA	False	AATAAA	-44	NA	40918401	40932579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_40918578_40921799_40921941_40924325_40924470_40924885_40925052_40926795_40926941_40930935_40931111_40931642
transcript_35589.known	chr3	-	3007	3	FSM	ENSMUSG00000049940.8	ENSMUST00000058578.8	3007	3	0	0	0	0	multi-exon	FALSE	canonical	3	569	junction_2	17	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTACATTTTTGGTTTT	NA	False	NA	NA	False	AATAAA	-26	NA	41037481	41020760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_41023160_41024714_41024871_41037029
transcript_35594.nnic	chr3	-	1088	5	Fusion	ENSMUSG00000097639.3_ENSMUSG00000105260.2	novel	305	2	NA	NA	-1	0	multi-exon	FALSE	canonical	3	9	junction_3	60.3116904090741	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	-10	True	AGTAAA	-16	NA	41447628	41432011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr3_-_41432228_41436231_41436380_41436506_41436880_41440150_41440396_41447522
transcript_35595.nnic	chr3	-	1082	5	Fusion	ENSMUSG00000097639.3_ENSMUSG00000105260.2	novel	305	2	NA	NA	-47	0	multi-exon	FALSE	canonical	0	0	junction_4	33.9806930476705	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	-10	True	AGTAAA	-16	NA	41447674	41432011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr3_-_41432228_41436231_41436380_41436506_41436880_41440150_41440396_41447574
transcript_35597.nnic	chr3	-	861	4	Fusion	ENSMUSG00000097639.3_ENSMUSG00000105260.2	novel	305	2	NA	NA	-19	0	multi-exon	FALSE	canonical	3	51	junction_3	13.2748718344933	25	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	-10	True	AGTAAA	-16	NA	41447646	41432011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr3_-_41432228_41436231_41436380_41436506_41436880_41447522
transcript_35598.nnic	chr3	-	813	4	Fusion	ENSMUSG00000097639.3_ENSMUSG00000105260.2	novel	305	2	NA	NA	-23	0	multi-exon	FALSE	canonical	3	25	junction_3	23.3666428910958	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	-10	True	AGTAAA	-16	NA	41447650	41432011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr3_-_41432228_41436231_41436380_41436506_41436880_41447574
transcript_35599.nnic	chr3	-	1229	4	Fusion	ENSMUSG00000097639.3_ENSMUSG00000105260.2	novel	504	2	NA	NA	-19	0	multi-exon	FALSE	canonical	3	17	junction_1	26.5455583227527	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	-10	True	AGTAAA	-16	NA	41447646	41432011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr3_-_41432596_41436231_41436380_41436506_41436880_41447522
transcript_3560.known	chr10	-	2757	8	FSM	ENSMUSG00000019795.18	ENSMUST00000162606.8	2757	8	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	146.985630284746	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGATCCTTGGTAGTCA	NA	False	NA	0	True	AATAAA	-20	NA	7539372	7505136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_7506741_7513819_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
transcript_35600.nnic	chr3	-	1181	4	Fusion	ENSMUSG00000097639.3_ENSMUSG00000105260.2	novel	504	2	NA	NA	-23	0	multi-exon	FALSE	canonical	3	17	junction_1	28.9405520948643	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCAAGCTCTCCTTCGTGT	NA	False	NA	-10	True	AGTAAA	-16	NA	41447650	41432011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr3_-_41432596_41436231_41436380_41436506_41436880_41447574
transcript_35602.nnic	chr3	-	1061	3	NNC	ENSMUSG00000097639.3	novel	2161	2	NA	NA	-37	-1439	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	43	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTAGGACTCTTAACTGTG	NA	False	NA	NA	False	TTTAAA	-4	NA	41447664	41439897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_41440396_41443750_41444172_41447522
transcript_35604.known	chr3	-	2161	2	FSM	ENSMUSG00000097639.3	ENSMUST00000199155.2	2161	2	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTACCTTGGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	41447625	41442113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_41444172_41447522
transcript_35605.known	chr3	-	986	2	FSM	ENSMUSG00000097639.3	ENSMUST00000181833.2	986	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTGCTCCAAATCCTGAA	NA	False	NA	-3	True	NA	NA	NA	41447627	41443238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_41444172_41447574
transcript_35619.nnic	chr3	-	774	5	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-13	14038	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	30.7123753558724	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTTGGTCATGGTGTC	NA	False	NA	1	True	NA	NA	NA	41482922	41461643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41477364_41477565_41482833
transcript_3562.known	chr10	-	2491	8	FSM	ENSMUSG00000019795.18	ENSMUST00000159917.8	2491	8	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	203.876012741638	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCACCAGTCTGGATCCTT	NA	False	NA	-8	True	AATAAA	-12	NA	7539067	7505144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_7506741_7513772_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
transcript_35620.nnic	chr3	-	888	5	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-12	14038	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	37.1374137494791	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTTGGTCATGGTGTC	NA	False	NA	1	True	NA	NA	NA	41482921	41461643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41477364_41477680_41482833
transcript_35621.nnic	chr3	-	760	5	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-13	14038	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	43.6942501938184	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTTGGTCATGGTGTC	NA	False	NA	1	True	NA	NA	NA	41482922	41461643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41477378_41477565_41482833
transcript_35622.nnic	chr3	-	874	5	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-12	14038	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	46.618129520606	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTTGGTCATGGTGTC	NA	False	NA	1	True	NA	NA	NA	41482921	41461643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41477378_41477680_41482833
transcript_35623.nnic	chr3	-	574	4	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-13	14038	at_least_one_novel_splicesite	FALSE	non_canonical	1	17	junction_1	28.2410261066335	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTTGGTCATGGTGTC	NA	False	NA	1	True	NA	NA	NA	41482922	41461643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_41461800_41464877_41465010_41476693_41476891_41482833
transcript_35626.nnic	chr3	-	534	4	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-12	-13	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	47.0767694539698	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGGTTGATGTCAATGGAC	NA	False	NA	-15	True	AATAAA	-14	NA	41482921	41476651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_41476891_41477378_41477565_41477658_41477680_41482833
transcript_35627.nnic	chr3	-	541	3	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	3	84	junction_1	5.5	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGACTTGTTTAACTATT	NA	False	NA	-2	True	AATAAA	-27	NA	41482922	41476638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_41476891_41477364_41477565_41482833
transcript_35628.known	chr3	-	643	3	FSM	ENSMUSG00000106223.2	ENSMUST00000199633.2	643	3	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	18	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGACTTGTTTAACTATT	NA	False	NA	-2	True	AATAAA	-27	NA	41482909	41476638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_41476891_41477364_41477680_41482833
transcript_35630.nnic	chr3	-	514	3	NNC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-13	-13	at_least_one_novel_splicesite	FALSE	canonical	3	95	junction_2	22	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGGTTGATGTCAATGGAC	NA	False	NA	-15	True	AATAAA	-14	NA	41482922	41476651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_41476891_41477378_41477565_41482833
transcript_35631.nic	chr3	-	628	3	NIC	ENSMUSG00000106223.2	novel	643	3	NA	NA	-12	-13	combination_of_known_junctions	FALSE	canonical	3	120	junction_2	9.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCGGTTGATGTCAATGGAC	NA	False	NA	-15	True	AATAAA	-14	NA	41482921	41476651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_41476891_41477378_41477680_41482833
transcript_35634.known	chr3	+	5481	11	FSM	ENSMUSG00000025764.15	ENSMUST00000026865.15	5481	11	0	0	0	0	multi-exon	FALSE	canonical	3	683	junction_7	54.3710400856927	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTCTGTTGAAATCTGCTT	NA	False	NA	19	True	AATAAA	-28	NA	41510165	41571299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_41510255_41535629_41535708_41543368_41543458_41546117_41546276_41548201_41548390_41551049_41551262_41554456_41554625_41555801_41555919_41558904_41559427_41564237_41564356_41567557
transcript_35640.nic	chr3	+	1084	8	NIC	ENSMUSG00000025766.15	novel	3574	7	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	2	10	junction_7	11.8648855959121	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGTGCTGTGTTTCA	NA	False	NA	12	True	ATTAAA	-22	NA	41697048	41713374	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_41697125_41699130_41699248_41700982_41701164_41703107_41703169_41708023_41708076_41708158_41708359_41710483_41710565_41713058
transcript_35641.known	chr3	+	3574	7	FSM	ENSMUSG00000025766.15	ENSMUST00000146165.8	3574	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	8.72576007513895	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGTGCTGTGTTTCA	NA	False	NA	12	True	ATTAAA	-22	NA	41697052	41713374	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_41697125_41699130_41699248_41700982_41701164_41703107_41703169_41708023_41708076_41708158_41708359_41710483
transcript_35643.known	chr3	-	593	2	FSM	ENSMUSG00000037910.3	ENSMUST00000036023.3	593	2	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAAGTTTAGATGTGTCT	NA	False	NA	0	True	AATAAA	-42	NA	48563537	48560166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_48560355_48563132
transcript_35644.known	chr3	-	2514	7	FSM	ENSMUSG00000037174.19	ENSMUST00000108051.8	2514	7	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_6	34.1987654098149	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTACCTAGCACAGTATT	NA	False	NA	NA	False	ATTAAA	-18	NA	51184935	51163085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172428_51174173_51174288_51184625
transcript_35646.known	chr3	-	2611	7	FSM	ENSMUSG00000037174.19	ENSMUST00000108053.9	2611	7	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_5	57.3626378596925	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTACCTAGCACAGTATT	NA	False	NA	NA	False	ATTAAA	-18	NA	51184996	51163085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_51164407_51164845_51165197_51166592_51166786_51168419_51168507_51172289_51172464_51174173_51174288_51184625
transcript_35648.known	chr3	-	1409	4	FSM	ENSMUSG00000037161.15	ENSMUST00000108046.8	1409	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	91.1604202613295	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTAGTCTTTCTTGTT	NA	False	NA	0	True	AATAAA	-17	NA	51303947	51295832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_51296745_51298646_51298741_51299245_51299350_51303648
transcript_35649.known	chr3	-	1232	4	FSM	ENSMUSG00000037161.15	ENSMUST00000038154.12	1232	4	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_2	9.84321537348893	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTAGTCTTTCTTGTT	NA	False	NA	0	True	AATAAA	-17	NA	51303969	51295832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_51296745_51298646_51298741_51299245_51299350_51303847
transcript_35650.known	chr3	-	315	4	FSM	ENSMUSG00000037152.12	ENSMUST00000193279.2	315	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2986.95545478818	1766	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCCTCAGTGACGGATGT	NA	False	NA	-136	True	NA	NA	NA	51316385	51313002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_51313036_51314756_51314834_51315565_51315670_51316284
transcript_35654.known	chr3	+	6090	20	FSM	ENSMUSG00000063273.12	ENSMUST00000029303.13	6090	20	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_18	45.4091281535727	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAAGTTTCACTTTTCCCTT	NA	False	NA	3	True	AATAAA	-20	NA	51323436	51383406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326_51349485_51350156_51350292_51351218_51351373_51354067_51354188_51355761_51355858_51355973_51356081_51358730_51358804_51363254_51363425_51364718_51364872_51366042_51366172_51367367_51367582_51368504_51368699_51370684_51370794_51373014_51373114_51377506_51377651_51378905_51379004_51380020
transcript_35659.known	chr3	+	7480	20	FSM	ENSMUSG00000063273.12	ENSMUST00000193266.6	7480	20	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_18	45.4091281535727	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCCCTGCTGGCCTCCAA	NA	False	NA	NA	False	NA	NA	NA	51322568	51383928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326_51349485_51350156_51350292_51351218_51351373_51354067_51354188_51355761_51355858_51355973_51356081_51358730_51358804_51363254_51363425_51364718_51364872_51366042_51366172_51367367_51367582_51368504_51368699_51370684_51370794_51373014_51373114_51377506_51377651_51378905_51379004_51380020
transcript_35661.nic	chr3	+	1289	6	ISM	ENSMUSG00000063273.12	ENSMUST00000029303.13	6090	20	-58	31801	-58	293	5prime_fragment	FALSE	canonical	3	512	junction_1	37.1860188780676	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGCTTTTGATTTTTTT	NA	False	NA	NA	False	AATAAA	-18	NA	51323378	51351605	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_51323798_51343635_51343721_51345759_51345865_51349326_51349485_51350156_51350292_51351218
transcript_35664.known	chr3	+	3492	2	FSM	ENSMUSG00000027739.10	ENSMUST00000054387.8	3492	2	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCCCAAATCTGATATTTAG	NA	False	NA	NA	False	AAGAAA	-1	NA	51391386	51403653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_51392002_51400776
transcript_35665.known	chr3	-	7411	8	FSM	ENSMUSG00000037111.10	ENSMUST00000037141.9	7411	8	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	3.23879544250132	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTTGTCAGTTTTGTTT	NA	False	NA	0	True	ATTAAA	-15	NA	51468300	51422739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_51428909_51434265_51434424_51437491_51437610_51440395_51440478_51443886_51444077_51450052_51450255_51457655_51457786_51467938
transcript_35672.known	chr3	+	603	5	FSM	ENSMUSG00000074604.10	ENSMUST00000099106.10	603	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.68954408012983	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGCTGTGGCTTTGTGG	8625	False	NA	NA	False	AATAAA	-15	NA	51568599	51590096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_51568728_51571931_51572032_51584985_51585057_51589217_51589300_51589874
transcript_35674.known	chr3	-	3182	19	FSM	ENSMUSG00000027742.14	ENSMUST00000036665.10	3182	19	0	0	0	0	multi-exon	TRUE	canonical	3	106	junction_7	14.5610676585896	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATACATGTCATGTGTGC	NA	False	NA	NA	False	ATTAAA	-20	NA	52924658	52889295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_52890613_52893821_52893902_52896530_52896585_52897379_52897488_52900175_52900344_52900860_52900993_52903428_52903547_52905677_52905770_52907901_52907967_52909666_52909759_52909833_52909963_52914666_52914761_52916473_52916545_52916893_52916977_52917996_52918109_52920326_52920386_52921235_52921308_52922889_52923034_52924466
transcript_35675.known	chr3	+	940	1	FSM	ENSMUSG00000049504.13	ENSMUST00000198186.2	940	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	53371227	53372167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_53371200_53372200
transcript_35676.known	chr3	-	457	1	FSM	ENSMUSG00000105879.2	ENSMUST00000198872.2	457	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	132	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGGACTTCTCATTATTTT	NA	False	NA	NA	False	AAGAAA	-29	NA	53600299	53599842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_53599800_53600300
transcript_35677.known	chr3	-	4890	6	FSM	ENSMUSG00000027746.14	ENSMUST00000146598.8	4890	6	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_3	16.7737890770094	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTACAGTTGATAAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	53771251	53760796	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034_53771092_53771169
transcript_35684.known	chr3	-	381	5	FSM	ENSMUSG00000027746.14	ENSMUST00000148338.8	381	5	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_3	16.1012421881046	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGAACAGGGAAAGCGGCC	NA	False	NA	40	True	AATGAA	-15	NA	53771110	53765242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_53765417_53766662_53766696_53767654_53767695_53768635_53768694_53771034
transcript_35685.known	chr3	+	1488	1	FSM	ENSMUSG00000069014.5	ENSMUST00000091130.5	1488	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	784	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAGAAATGT	5440	False	NA	NA	False	NA	NA	NA	54388858	54390346	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_54388900_54390300
transcript_35686.known	chr3	+	1080	1	FSM	ENSMUSG00000069014.5	ENSMUST00000198699.2	1080	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAACAGAAACGGCTAC	5462	False	NA	NA	False	NA	NA	NA	54388880	54389960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_54388900_54390000
transcript_35705.known	chr3	+	1866	15	FSM	ENSMUSG00000027751.14	ENSMUST00000200450.2	1866	15	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	151.776554345457	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAGTAGAG	NA	False	NA	NA	False	NA	NA	NA	54600278	54620173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_54600303_54600523_54600630_54602543_54602629_54603904_54603941_54604371_54604431_54606013_54606081_54608910_54609038_54610491_54610596_54614280_54614398_54614508_54614563_54615677_54615818_54616451_54616609_54616693_54616751_54617821_54617894_54619512
transcript_35712.known	chr3	-	1300	11	FSM	ENSMUSG00000027752.16	ENSMUST00000029316.16	1300	11	0	0	0	0	multi-exon	FALSE	canonical	3	1645	junction_10	187.140588863026	1945	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGTCCTTACGTTGTT	NA	False	NA	-12	True	AATAAA	-27	NA	54642814	54636098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54638593_54639401_54639448_54639532_54639639_54640120_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
transcript_35741.known	chr3	-	2316	8	FSM	ENSMUSG00000027752.16	ENSMUST00000150923.8	2316	8	0	0	0	0	multi-exon	FALSE	canonical	3	1645	junction_7	192.173603487969	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATTTCTAGTCCTTACGT	NA	False	NA	-16	True	AATAAA	-23	NA	54642458	54636102	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_54636315_54636614_54636722_54637185_54637307_54638495_54640167_54641078_54641153_54641523_54641588_54641716_54641754_54642428
transcript_35751.known	chr3	+	2972	10	FSM	ENSMUSG00000036632.10	ENSMUST00000141191.8	2972	10	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	150.752270011367	371	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCTGTGGTCATGG	NA	False	NA	NA	False	NA	NA	NA	54642979	54658739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_54643071_54646202_54646373_54646682_54646730_54648799_54648869_54649567_54649661_54652018_54652133_54652527_54652588_54653886_54654039_54656028_54656115_54656649
transcript_35759.nnic	chr3	+	798	4	NNC	ENSMUSG00000027796.3	novel	5368	6	NA	NA	30717	-3640	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	6.84754619472471	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCACGTTTATATCACCGTT	625	False	NA	NA	False	AATACA	-17	NA	54693719	54705038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_54693779_54696606_54696829_54701652_54701910_54704778
transcript_35762.known	chr3	-	2162	3	FSM	ENSMUSG00000036615.8	ENSMUST00000044373.6	2162	3	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_1	17.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTCTGCTGTACTTATTT	NA	False	NA	0	True	ATTAAA	-21	NA	54715212	54710535	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_54711997_54712780_54712889_54714619
transcript_35768.nnic	chr3	+	440	3	Antisense	novelGene_ENSMUSG00000056306.7_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	2	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGTGGGCCATTCTCGTGTG	NA	False	NA	6	True	GATAAA	-18	NA	54794218	54807704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr3_+_54794305_54794833_54794945_54807461
transcript_35770.known	chr3	-	1560	9	FSM	ENSMUSG00000027793.7	ENSMUST00000029368.7	1560	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	3.25720355519885	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGTTGGGGCTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	54962476	54952895	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_54953130_54953387_54953522_54954629_54954744_54955828_54956034_54957098_54957323_54957966_54958092_54958269_54958517_54961753_54961940_54962385
transcript_35771.nic	chr3	-	1452	8	NIC	ENSMUSG00000027793.7	novel	1560	9	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	3.99489470117416	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGGGGCTCTTTACTAGT	NA	False	NA	NA	False	AATAAA	-21	NA	54962496	54952889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_54953130_54954629_54954744_54955828_54956034_54957098_54957323_54957966_54958092_54958269_54958517_54961753_54961940_54962385
transcript_35776.known	chr3	+	3770	9	FSM	ENSMUSG00000036580.16	ENSMUST00000044116.14	3770	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	65.469339197826	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGATGTATTCACTGGAC	NA	False	NA	21	True	AATAAA	-22	NA	55019528	55044743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_55019639_55024404_55025217_55029020_55029219_55032175_55032347_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
transcript_35779.known	chr3	+	3567	8	FSM	ENSMUSG00000036580.16	ENSMUST00000107971.9	3567	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	57.8710741604975	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTGCTGGGCCTCAGATGT	NA	False	NA	10	True	AATAAA	-11	NA	55019549	55044732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_55019639_55024404_55025217_55029020_55029219_55033954_55034076_55034915_55035111_55035637_55035797_55035919_55036011_55042830
transcript_35783.known	chr3	+	2364	11	FSM	ENSMUSG00000027794.5	ENSMUST00000029369.5	2364	11	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_8	29.6317397396778	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGTGCAAGGAATCTGAT	NA	False	NA	20	True	AATAAA	-22	NA	55089448	55117378	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_55089536_55096541_55096757_55097730_55097793_55097874_55097980_55099659_55099757_55102493_55102605_55104147_55104296_55104418_55104508_55111754_55111877_55115013_55115271_55116307
transcript_35785.known	chr3	-	4697	7	FSM	ENSMUSG00000027803.15	ENSMUST00000029380.14	4697	7	0	0	0	0	multi-exon	TRUE	canonical	3	192	junction_3	19.06494747494	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGGCCTTTGTTTCTGTC	NA	False	NA	-6	True	AATAAA	-17	NA	57483249	57363069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_57366532_57369939_57370053_57370863_57370986_57384777_57384978_57409152_57409290_57482243_57482679_57483021
transcript_35792.known	chr3	-	2992	5	FSM	ENSMUSG00000036513.16	ENSMUST00000160959.8	2992	5	0	0	0	0	multi-exon	FALSE	canonical	3	518	junction_3	10.5593560409714	527	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACGAAAAAAAAAAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	57559136	57551769	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_57554298_57557462_57557637_57558111_57558195_57558842_57558921_57559007
transcript_35796.known	chr3	-	892	4	FSM	ENSMUSG00000036513.16	ENSMUST00000041954.10	892	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	244.439949453621	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAACTATTTCTAGACAGTTC	NA	False	NA	-11	True	AATAAA	-19	NA	57559129	57553779	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_57554298_57557462_57557637_57558842_57558921_57559007
transcript_35799.nnic	chr3	+	2413	11	NNC	ENSMUSG00000036503.14	novel	2678	10	NA	NA	-4	-288	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	55.1311164407179	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTATTGTTCTGGTGAA	NA	False	NA	22	True	AATAAA	-22	NA	57643491	57742252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_57643622_57655311_57655456_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
transcript_35804.known	chr3	+	3244	10	FSM	ENSMUSG00000036503.14	ENSMUST00000197205.5	3244	10	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_5	52.0948802015119	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTATATGAGCATTTCATT	NA	False	NA	NA	False	AATAAA	-25	NA	57643533	57742540	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709138_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
transcript_35806.known	chr3	+	2678	10	FSM	ENSMUSG00000036503.14	ENSMUST00000041826.14	2678	10	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_9	27.8053196793192	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTCTTTGTTGAGTTTT	NA	False	NA	NA	False	AAGAAA	-42	NA	57643482	57742652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
transcript_35808.known	chr3	+	2573	10	FSM	ENSMUSG00000036503.14	ENSMUST00000200497.5	2573	10	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_9	52	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTTTGTTGAGTTTTTT	NA	False	NA	NA	False	AAGAAA	-44	NA	57643502	57742654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740993
transcript_35811.nic	chr3	+	2289	10	NIC	ENSMUSG00000036503.14	novel	2678	10	NA	NA	-1	-288	combination_of_known_junctions	FALSE	canonical	3	29	junction_5	45.5520323840878	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTATTGTTCTGGTGAA	NA	False	NA	22	True	AATAAA	-22	NA	57643481	57742252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703717_57709867_57709959_57714442_57714549_57727927_57728022_57740384_57740466_57740906
transcript_35813.known	chr3	+	1062	9	FSM	ENSMUSG00000036503.14	ENSMUST00000199041.2	1062	9	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_8	24.8281594162757	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTCTCTTCATACAATAGT	NA	False	NA	NA	False	AATAAA	-23	NA	57643540	57740653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_57643622_57671677_57671804_57676460_57676542_57686803_57686930_57703618_57703707_57709867_57709959_57714442_57714549_57727927_57728022_57740384
transcript_35817.known	chr3	-	2342	3	FSM	ENSMUSG00000027805.17	ENSMUST00000066882.10	2342	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	7	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGACTCCTGTTTTTATTA	NA	False	NA	4	True	AATAAA	-23	NA	57755500	57749315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_57750736_57752594_57752788_57754771
transcript_35822.known	chr3	+	2299	14	FSM	ENSMUSG00000027810.15	ENSMUST00000029387.15	2299	14	0	0	0	0	multi-exon	TRUE	canonical	3	611	junction_6	73.3195163601748	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	False	NA	5	True	AATAAA	-16	NA	58433241	58464922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_58433508_58438507_58438578_58444954_58445030_58446948_58447068_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
transcript_35825.known	chr3	+	1945	13	FSM	ENSMUSG00000027810.15	ENSMUST00000154219.8	1945	13	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_3	220.750408958977	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCCTTCAAGTTTGTC	NA	False	NA	5	True	AATAAA	-16	NA	58433476	58464922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_58433508_58438507_58438578_58444954_58445030_58448460_58448561_58449054_58449138_58452415_58452490_58452648_58452794_58452920_58453038_58455813_58456386_58459989_58460104_58462955_58463073_58463993_58464060_58464541
transcript_35832.known	chr3	-	4611	3	FSM	ENSMUSG00000027808.9	ENSMUST00000029385.9	4611	3	0	0	0	0	multi-exon	FALSE	canonical	3	847	junction_1	36.5	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTAGGAACTGGTGGTGT	NA	False	NA	NA	False	AATAAA	-17	NA	58433313	58427237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_58431290_58432503_58432580_58432830
transcript_35834.known	chr3	+	3157	6	FSM	ENSMUSG00000075700.11	ENSMUST00000107924.3	3157	6	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_4	12.1061967603372	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCTGCTTTGTGAAAATG	NA	False	NA	15	True	AATAAA	-18	NA	58484056	58500554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_58484295_58492651_58492763_58493372_58493500_58495866_58495955_58497587_58497742_58498115
transcript_35838.known	chr3	+	636	1	FSM	ENSMUSG00000059776.8	ENSMUST00000079761.8	636	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTGGAGAGTTGCA	NA	False	NA	NA	False	AAAAAG	-44	NA	58894590	58895226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_58894600_58895200
transcript_35839.known	chr3	+	182	2	FSM	ENSMUSG00000027694.10	ENSMUST00000193411.2	182	2	0	0	0	0	multi-exon	FALSE	canonical	3	1840	junction_1	0	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAATCTATGAAAACCGAAT	NA	False	NA	NA	False	NA	NA	NA	60784434	60784735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_60784468_60784586
transcript_35846.nic	chr3	+	3268	23	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	51.6275000395194	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCATTGAATATTGAAGTT	NA	False	NA	5	True	AATAAA	-15	NA	63202795	63288517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
transcript_35847.nic	chr3	+	3543	23	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	-21	-200	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	51.6275000395194	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGCCTGTGTGCACGCCA	NA	False	NA	10	True	AATAAA	-21	NA	63202847	63288844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
transcript_35849.known	chr3	+	3782	23	FSM	ENSMUSG00000027820.13	ENSMUST00000029400.7	3782	23	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	72.8286793023574	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTACAGTCCTTATTTT	NA	False	NA	11	True	TATAAA	-15	NA	63203515	63289044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_63203744_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436_63247572_63249327_63249430_63250917_63251055_63251162_63251257_63252545_63252675_63253474_63253574_63254557_63254639_63256038_63256143_63266326_63266386_63269352_63269473_63272182_63272317_63272417_63272484_63275899_63275996_63276300_63276378_63287653
transcript_3585.known	chr10	-	1132	7	FSM	ENSMUSG00000019795.18	ENSMUST00000163085.8	1132	7	0	0	0	0	multi-exon	FALSE	canonical	3	667	junction_3	37.7491721763537	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCATTCTTGCTTTATT	NA	False	NA	1	True	AATAAA	-21	NA	7539025	7513493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_7513990_7515808_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
transcript_35862.nic	chr3	+	1098	9	NIC	ENSMUSG00000027820.13	novel	3345	23	NA	NA	-73	-4477	combination_of_known_junctions	FALSE	canonical	3	270	junction_1	55.9797675504284	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCCAATGTAACACATATT	NA	False	NA	NA	False	AATAAA	-23	NA	63202795	63247563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_63203037_63207545_63207716_63208399_63208436_63234134_63234297_63235205_63235287_63235392_63235489_63235590_63235710_63237070_63237137_63247436
transcript_35867.known	chr3	-	1640	5	FSM	ENSMUSG00000048581.13	ENSMUST00000061706.7	1640	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	6.68487097856047	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTTCTGAGATCACTC	NA	False	NA	NA	False	AATAAA	-15	NA	63836893	63822104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_63823160_63827621_63827783_63832754_63832903_63834684_63834745_63836677
transcript_35868.known	chr3	-	3150	6	FSM	ENSMUSG00000027822.17	ENSMUST00000029402.15	3150	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_5	11.3666177907063	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAAAGCTGTTTTTTTAA	NA	False	NA	NA	False	AATAAA	-24	NA	63872189	63849750	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_63850838_63851986_63852203_63854989_63855108_63855492_63855678_63861234_63861426_63870836
transcript_35876.known	chr3	+	8105	16	FSM	ENSMUSG00000027823.10	ENSMUST00000029405.8	8105	16	0	0	0	0	multi-exon	FALSE	canonical	3	954	junction_10	99.4709114375767	698	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCATCTTGTGGTTTTGT	NA	False	NA	NA	False	AATAAA	-22	NA	63883526	63930000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_63883732_63887556_63887739_63889831_63889947_63893020_63893119_63895079_63895184_63897575_63897770_63897937_63898104_63900611_63900764_63901220_63901395_63904227_63904334_63906022_63906139_63908933_63909060_63918977_63919094_63921674_63921806_63922845_63923019_63924053
transcript_35883.known	chr3	-	2957	5	FSM	ENSMUSG00000027828.13	ENSMUST00000029414.12	2957	5	0	0	0	0	multi-exon	FALSE	canonical	3	545	junction_4	56.4225132371822	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTTTTCTGTAATTCT	2716	False	NA	-1	True	ATTAAA	-20	NA	65300044	65287075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_65289456_65290412_65290545_65295152_65295252_65298745_65298873_65299825
transcript_35886.known	chr3	+	2461	3	FSM	ENSMUSG00000074579.15	ENSMUST00000099075.4	2461	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	1	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTGTGTGTAATTATTG	NA	False	NA	NA	False	AATAAA	-14	NA	65573648	65593600	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_65573733_65576510_65576600_65591312
transcript_35888.known	chr3	-	1981	12	FSM	ENSMUSG00000027829.16	ENSMUST00000135719.8	1981	12	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_8	51.1618724254952	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATTTTTACAAGGAAATA	NA	False	NA	NA	False	TTTAAA	-44	NA	65865453	65853615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_65854370_65855111_65855211_65855317_65855430_65855682_65855825_65855916_65856022_65856111_65856212_65857900_65857966_65858854_65858976_65862624_65862698_65864273_65864384_65864921_65864997_65865228
transcript_3589.known	chr10	-	1369	6	FSM	ENSMUSG00000019795.18	ENSMUST00000160250.2	1369	6	0	0	0	0	multi-exon	FALSE	canonical	3	667	junction_2	40.4009900868778	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAACAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	7539372	7515422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_7515895_7516458_7516580_7520088_7520194_7523353_7523386_7524814_7524920_7538838
transcript_35890.known	chr3	+	3224	10	FSM	ENSMUSG00000034544.18	ENSMUST00000065074.14	3224	10	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_4	31.3821526695165	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTGTGACTGCTTCCTCC	NA	False	NA	15	True	AATAAA	-15	NA	66893004	67265728	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
transcript_359.known	chr1	-	4494	7	FSM	ENSMUSG00000025937.7	ENSMUST00000027071.7	4494	7	0	0	0	0	multi-exon	FALSE	canonical	3	2151	junction_5	155.94015946296	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTGTGTGTGAACTAATT	NA	False	NA	NA	False	AATAAA	-31	NA	13730770	13693553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_13697129_13697579_13697662_13700288_13700438_13708454_13708634_13717608_13717736_13720944_13721109_13730552
transcript_35901.known	chr3	+	3062	9	FSM	ENSMUSG00000034544.18	ENSMUST00000046542.13	3062	9	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_2	112.554153632818	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACACTGTGACTGCTT	NA	False	NA	10	True	AATAAA	-10	NA	66893035	67265723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_66893140_66901849_66902046_66989868_66990043_67088161_67088199_67113758_67113811_67197679_67197749_67257241_67257349_67262806_67262960_67263553
transcript_35903.nic	chr3	+	792	7	ISM	ENSMUSG00000034544.18	ENSMUST00000065074.14	3224	10	-20	67997	-18	-63324	5prime_fragment	FALSE	canonical	3	299	junction_4	30.8148593304522	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAAGAAAAGAAGAAGGTA	NA	False	NA	NA	False	ATTAAA	-31	NA	66892984	67197731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868_66990043_67088161_67088199_67113758_67113811_67197679
transcript_35906.known	chr3	+	3136	4	FSM	ENSMUSG00000034544.18	ENSMUST00000162620.9	3136	4	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_2	33.0689515339624	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATCTGTACATTGGACTCT	NA	False	NA	NA	False	AATAAA	-13	NA	66893017	66992560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_66893140_66901849_66902046_66903797_66903924_66989868
transcript_35907.known	chr3	+	1114	7	FSM	ENSMUSG00000048416.16	ENSMUST00000077916.12	1114	7	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	4.04145188432738	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAATGTGGTTAAATTGGT	NA	False	NA	1	True	AATAAA	-14	NA	67281429	67307331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_67281596_67291883_67292032_67300224_67300309_67301267_67301397_67302584_67302745_67305113_67305244_67307034
transcript_35911.known	chr3	+	4078	18	FSM	ENSMUSG00000027774.17	ENSMUST00000077271.9	4078	18	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	154.691388272057	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTTTCTTCCTGCTTCA	NA	False	NA	11	True	ATTAAA	-25	NA	67337428	67383862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_67337656_67338982_67339136_67340687_67340821_67342837_67343043_67345878_67345996_67347434_67347586_67350887_67351043_67352105_67352191_67357011_67357150_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382051
transcript_35914.nnic	chr3	+	1500	10	NNC	ENSMUSG00000027774.17	novel	924	7	NA	NA	-6561	264	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	155.305433832103	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTATATATAATATTATATA	NA	False	NA	NA	False	AGTAAA	-31	NA	67357250	67382401	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_67357498_67358631_67358734_67361002_67361060_67363905_67364044_67365220_67365304_67375139_67375303_67376798_67376944_67380795_67380957_67381885_67381940_67382051
transcript_35915.known	chr3	-	1112	6	FSM	ENSMUSG00000047557.3	ENSMUST00000058981.3	1112	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_4	5.56417109729742	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGAGTCTAATTGCATTGTA	NA	False	NA	-3	True	AATAAA	-18	NA	67371259	67365330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_67365661_67365926_67365990_67368254_67368392_67368644_67368823_67369691_67369755_67370918
transcript_35916.nic	chr3	-	986	2	ISM	ENSMUSG00000049404.8	ENSMUST00000054825.5	1325	6	35568	-81	35568	81	3prime_fragment	FALSE	canonical	2	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTCTCTACTGTCTCACAT	NA	False	NA	NA	False	ATTAAA	-38	NA	67387288	67386223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_67386820_67386898
transcript_35917.known	chr3	+	3011	16	FSM	ENSMUSG00000027775.10	ENSMUST00000029344.10	3011	16	0	0	0	0	multi-exon	TRUE	canonical	3	661	junction_4	69.2886394407882	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGGAGGATAAATGACTGC	NA	False	NA	19	True	AATAAA	-20	NA	67490073	67511570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_67490311_67491976_67492030_67492930_67493044_67494633_67494677_67495250_67495319_67497163_67497273_67499902_67500006_67501631_67501731_67502100_67502213_67503501_67503559_67503926_67504084_67505360_67505459_67507272_67507386_67507925_67507974_67508654_67508713_67510027
transcript_35921.known	chr3	+	2369	11	FSM	ENSMUSG00000102422.2	ENSMUST00000182006.4	2369	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	227.547555469181	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTCCTTTTGCTCACTAACA	NA	False	NA	24	True	AATAAA	-26	NA	67799564	68533799	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_67799655_67948526_67948592_67954570_67954652_67962595_67962732_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
transcript_35923.known	chr3	+	2156	8	FSM	ENSMUSG00000027777.16	ENSMUST00000182719.8	2156	8	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	72.6321455791344	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACGTCCTTTTGCTCACTA	NA	False	NA	21	True	AATAAA	-23	NA	68401540	68533796	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_68401703_68401906_68402591_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
transcript_35925.known	chr3	+	1730	7	FSM	ENSMUSG00000027777.16	ENSMUST00000170788.9	1730	7	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	136.891684675634	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGTCCTTTTGCTCACTAA	NA	False	NA	22	True	AATAAA	-24	NA	68479577	68533797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_68479997_68503482_68503602_68523772_68523891_68524943_68525142_68525928_68526053_68528305_68528400_68533139
transcript_35927.known	chr3	-	4064	20	FSM	ENSMUSG00000027778.16	ENSMUST00000169064.8	4064	20	0	0	0	0	multi-exon	FALSE	non_canonical	3	27	junction_10	3.97847393451879	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAATAAAAAGGTTAAAAAA	NA	False	NA	NA	False	AAGAAA	-35	NA	68911903	68799857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_68801515_68805817_68805942_68821944_68822118_68822226_68822317_68823424_68823597_68825289_68825438_68825822_68825959_68835059_68835125_68838154_68838319_68843179_68843255_68847418_68847538_68857686_68857867_68869512_68869651_68870955_68871046_68875179_68875290_68892747_68892817_68895216_68895328_68898074_68898295_68901831_68901916_68911764
transcript_35928.known	chr3	+	4316	24	FSM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	0	0	0	0	multi-exon	FALSE	canonical	3	521	junction_3	142.05353233605	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTTTCCTGTTTTAT	NA	False	NA	20	True	TATAAA	-21	NA	68912070	68941956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
transcript_3593.known	chr10	+	458	2	FSM	ENSMUSG00000040034.16	ENSMUST00000162346.2	458	2	0	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGAAATGGAATTCAGGTAA	NA	False	NA	NA	False	GGGGCT	-1	NA	7543277	7544055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_7543446_7543765
transcript_35930.nnic	chr3	+	3526	22	NNC	ENSMUSG00000034349.15	novel	4316	24	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	212.97788202368	79	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACAAGTTTCCTGTTTTAT	NA	False	NA	20	True	TATAAA	-21	NA	68912321	68941956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_68912424_68913408_68913547_68914521_68914531_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568_68928734_68929558_68929793_68931497_68931684_68933156_68933319_68934825_68935052_68935151_68935232_68935777_68935931_68936733_68936861_68937575_68937766_68938740_68938886_68939069_68939244_68940039_68940223_68940358_68940592_68941270_68941455_68941706
transcript_35934.nic	chr3	+	1780	10	ISM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	-51	13283	-51	-60	5prime_fragment	FALSE	canonical	3	521	junction_3	56.5844719789431	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAAGAGGTCATGGACAG	NA	False	NA	NA	False	NA	NA	NA	68912019	68928673	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507_68926659_68928568
transcript_35935.nic	chr3	+	1729	9	ISM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	-117	15310	-117	-14	5prime_fragment	FALSE	canonical	3	521	junction_3	59.992577665908	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAAAGAAAAGGTAGGTAT	NA	False	NA	NA	False	AGTAAA	-31	NA	68911953	68926646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403_68925545_68926507
transcript_35938.nic	chr3	+	1421	8	ISM	ENSMUSG00000034349.15	ENSMUST00000042901.15	4316	24	-51	16515	-51	0	5prime_fragment	FALSE	canonical	3	521	junction_3	58.1644396587496	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGGAAAAAATTCATGAA	NA	False	NA	NA	False	AATAGA	-20	NA	68912019	68925441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_68912424_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403
transcript_35943.known	chr3	+	1163	8	FSM	ENSMUSG00000034349.15	ENSMUST00000136502.8	1163	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	229.368609848151	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAGGAAAAAATTCATGAA	NA	False	NA	NA	False	AATAGA	-20	NA	68912302	68925441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_68912449_68913408_68913547_68914521_68914701_68915261_68915454_68916816_68916994_68923425_68923591_68923984_68924113_68925403
transcript_35944.known	chr3	-	3726	17	FSM	ENSMUSG00000027782.11	ENSMUST00000194558.6	3726	17	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_6	26.0353575690829	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTGTGGTGTGTGGAT	NA	False	NA	-1	True	AATAAA	-33	NA	69034425	68979553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_68981521_68984082_68984178_68986709_68986873_68988491_68988564_68991382_68991488_68993019_68993149_68994789_68994922_68997108_68997154_68997240_68997411_69000142_69000230_69001985_69002072_69002852_69002949_69008384_69008438_69008534_69008565_69008673_69008764_69009536_69009582_69034064
transcript_35950.known	chr3	-	2028	3	FSM	ENSMUSG00000043300.3	ENSMUST00000061826.3	2028	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTTTCTCGATGTCA	NA	False	NA	1	True	ATTAAA	-41	NA	69506293	69481490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_69483294_69486658_69486725_69506134
transcript_35954.known	chr3	+	9135	16	FSM	ENSMUSG00000027787.15	ENSMUST00000029358.15	9135	16	0	0	0	0	multi-exon	FALSE	canonical	3	839	junction_3	66.7311687960648	895	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGAAGTCTGGTTGAGTA	NA	False	NA	NA	False	AATAAA	-15	NA	69629317	69663706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_69629456_69629741_69629800_69631589_69631725_69633693_69633791_69636670_69636752_69637737_69637867_69638897_69638989_69642378_69642458_69643325_69643423_69647252_69647371_69648841_69648988_69650848_69650962_69652545_69652619_69654061_69654169_69655630_69655702_69656104
transcript_35964.known	chr3	-	907	8	FSM	ENSMUSG00000027835.12	ENSMUST00000029424.12	907	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	493.920757091372	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTTAAAGTTTGACTGT	NA	False	NA	NA	False	ATTAAA	-15	NA	75464118	75424767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_75424909_75428008_75428092_75428337_75428417_75434894_75435022_75436116_75436235_75440847_75440898_75448466_75448686_75464028
transcript_35968.known	chr3	+	4091	9	FSM	ENSMUSG00000027834.16	ENSMUST00000029423.9	4091	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	2.1650635094611	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	AGTAAA	-41	NA	75464853	75550802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_75464950_75520386_75520655_75521760_75521992_75523874_75524070_75526425_75526631_75531165_75531264_75545224_75545312_75547555_75547646_75547981
transcript_35970.nnic	chr3	-	991	4	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	92.8906166771793	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563097	75554752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_75555246_75556106_75556298_75562696_75562869_75562962
transcript_35971.nnic	chr3	-	989	4	NNC	ENSMUSG00000099370.2	novel	1026	3	NA	NA	-88	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_1	82.6411250864577	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563126	75554752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_75555246_75556106_75556298_75562696_75562869_75562993
transcript_35973.known	chr3	-	1026	3	FSM	ENSMUSG00000099370.2	ENSMUST00000190602.2	1026	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	94	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTCTCATGGTCATGGTG	NA	False	NA	-5	True	NA	NA	NA	75563038	75554752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_75555246_75556106_75556298_75562696
transcript_35974.known	chr3	-	817	3	FSM	ENSMUSG00000034109.16	ENSMUST00000125405.2	817	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	3	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	CAAAAAAAAAACAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	75863957	75817162	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_75817366_75818881_75818957_75863418
transcript_3598.known	chr10	+	1775	11	FSM	ENSMUSG00000019794.14	ENSMUST00000165806.8	1775	11	0	0	0	0	multi-exon	TRUE	canonical	3	353	junction_4	21.6323831327018	353	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTTTCAATTTAGCACC	NA	False	NA	10	True	AATAAA	-19	NA	7601763	7638914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_7601888_7614486_7614662_7617171_7617330_7619319_7619501_7624539_7624662_7627307_7627414_7628507_7628667_7635460_7635588_7636498_7636634_7637006_7637134_7638553
transcript_35987.known	chr3	+	1752	10	FSM	ENSMUSG00000027804.14	ENSMUST00000029382.13	1752	10	0	0	0	0	multi-exon	FALSE	canonical	3	2177	junction_5	219.851352699843	1885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGGATGTCCTTTCCTG	NA	False	NA	29	True	AATAAA	-19	NA	79498671	79510957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_79498865_79500916_79501058_79502508_79502616_79504991_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
transcript_35994.known	chr3	+	3777	9	FSM	ENSMUSG00000027804.14	ENSMUST00000161460.8	3777	9	0	0	0	0	multi-exon	FALSE	canonical	3	2177	junction_4	229.457478359281	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGAATCTCATTTTAAAAT	NA	False	NA	16	True	AATAAA	-15	NA	79498648	79510583	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_79498865_79500916_79501058_79502508_79505181_79506098_79506222_79506358_79506466_79507564_79507707_79509578_79509666_79509749_79509793_79510337
transcript_35996.known	chr3	-	2377	13	FSM	ENSMUSG00000027809.15	ENSMUST00000029386.14	2377	13	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_10	10.8790701195767	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTACCTTTCAAGTCCTTC	3584	False	NA	0	True	AATAAA	-30	NA	79536170	79511094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_79511473_79512211_79512434_79512936_79513120_79517105_79517275_79519218_79519363_79520928_79521070_79522306_79522454_79523230_79523309_79525613_79525733_79526145_79526228_79530044_79530275_79530847_79530986_79535824
transcript_35998.known	chr3	-	3740	3	FSM	ENSMUSG00000027809.15	ENSMUST00000149511.2	3740	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATATAAATGTTTACACTC	3729	False	NA	NA	False	AATAAA	-11	NA	79536025	79526873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_79530275_79530847_79530986_79535824
transcript_35999.known	chr3	+	1970	2	FSM	ENSMUSG00000027811.10	ENSMUST00000029388.10	1970	2	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	0	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCGTTTCTTTAGACTCA	4369	False	NA	NA	False	AATAAA	-14	NA	79536385	79540127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_79536664_79538435
transcript_36.known	ERCC-00097	+	506	1	FSM	ERCC-00097A	DQ516758	506	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00097_+_0_500
transcript_36000.nnic	chr3	-	2772	12	NIC	ENSMUSG00000027956.12	novel	2898	12	NA	NA	-24	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	3.82466981235684	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTCTTCTTTAGATA	NA	False	NA	NA	False	AATAAA	-17	NA	79750243	79719870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_79721454_79724323_79724378_79728564_79728663_79729937_79730058_79732585_79732705_79734129_79734207_79734921_79735004_79739368_79739450_79741214_79741315_79743540_79743664_79746444_79746614_79750077
transcript_36002.nnic	chr3	-	1655	12	NIC	ENSMUSG00000027956.12	novel	2898	12	NA	NA	-24	-548	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	3.82466981235684	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTTCTTGGTTGTGGGA	NA	False	NA	NA	False	AATAAA	-16	NA	79750243	79720987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_79721454_79724323_79724378_79728564_79728663_79729937_79730058_79732585_79732705_79734129_79734207_79734921_79735004_79739368_79739450_79741214_79741315_79743540_79743664_79746444_79746614_79750077
transcript_36007.known	chr3	-	1101	8	FSM	ENSMUSG00000028020.17	ENSMUST00000107743.8	1101	8	0	0	0	0	multi-exon	TRUE	canonical	3	32	junction_4	4.17475405605784	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTCTGGTTTTGTATTTAA	NA	False	NA	NA	False	AATAAA	-20	NA	80820835	80762935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_80763245_80767467_80767609_80769009_80769093_80769198_80769429_80785315_80785384_80786932_80787040_80819274_80819426_80820823
transcript_36008.known	chr3	+	3521	6	FSM	ENSMUSG00000028019.10	ENSMUST00000029652.4	3521	6	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	10.870142593361	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTCGTCTAAGTGTATGT	NA	False	NA	46	True	AATAAA	-31	NA	80943722	81121347	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_80944862_81048711_81048908_81082122_81082304_81111541_81111750_81116350_81116569_81119768
transcript_36009.known	chr3	+	2818	7	FSM	ENSMUSG00000028019.10	ENSMUST00000129285.8	2818	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	32.8705372974374	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTAAGTGTTCGTCTAAGT	NA	False	NA	40	True	AATAAA	-25	NA	80944478	81121341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_80944862_81038324_81038384_81048711_81048908_81082122_81082304_81111541_81111750_81116350_81116569_81119768
transcript_36010.known	chr3	+	703	1	FSM	ENSMUSG00000028015.4	ENSMUST00000192067.2	703	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAAG	NA	False	NA	NA	False	TTTAAA	-5	NA	81839929	81840632	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_81839900_81840600
transcript_36011.known	chr3	+	1695	10	FSM	ENSMUSG00000033860.14	ENSMUST00000048486.13	1695	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	1.8324913891634	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAGACATTCCGTGGCTT	NA	False	NA	NA	False	AATAAA	-16	NA	82915030	82922356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_82915290_82915459_82915505_82915680_82915865_82915954_82916049_82917370_82917502_82917762_82917897_82918651_82918837_82920070_82920349_82921444_82921615_82922141
transcript_36012.known	chr3	+	1741	9	FSM	ENSMUSG00000033860.14	ENSMUST00000194175.2	1741	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	1.69096865730859	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAGAACTTGACCTGTAT	NA	False	NA	NA	False	AATAAA	-12	NA	82915167	82922012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_82915290_82915459_82915505_82915680_82915865_82915954_82916049_82917370_82917502_82917762_82917897_82918651_82918837_82920070_82920349_82921444
transcript_36016.known	chr3	+	1851	15	FSM	ENSMUSG00000027998.12	ENSMUST00000150268.8	1851	15	0	0	0	0	multi-exon	TRUE	canonical	3	670	junction_6	49.0312790627637	622	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGGCATGTTGAGGATTG	NA	False	NA	7	True	AATAAA	-40	NA	82962828	82979662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977903_82978044_82978496_82978691_82979417
transcript_36017.known	chr3	+	1749	15	FSM	ENSMUSG00000027998.12	ENSMUST00000029628.11	1749	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	194.977719815598	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACCTGTGTTTTATTTCTG	NA	False	NA	24	True	AATAAA	-16	NA	82962838	82979596	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_82962962_82964077_82964185_82965962_82966106_82966633_82966688_82967143_82967235_82968340_82968429_82973188_82973288_82973985_82974079_82975304_82975455_82975565_82975668_82976268_82976372_82976999_82977109_82977929_82978044_82978496_82978691_82979417
transcript_36024.known	chr3	-	3014	3	FSM	ENSMUSG00000027995.11	ENSMUST00000029623.11	3014	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	5.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCGGTTTCTCTGTTTTTC	NA	False	NA	-1	True	TATAAA	-16	NA	83749074	83743578	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_83746097_83748195_83748444_83748826
transcript_36025.known	chr3	-	5555	35	FSM	ENSMUSG00000033767.15	ENSMUST00000191758.6	5555	35	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_6	12.592082974362	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCCCACTTTGTCTTCATT	NA	False	NA	NA	False	AATAAA	-41	NA	83947482	83804961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_83805921_83806483_83806624_83807633_83807726_83808652_83808774_83812339_83812423_83813653_83813733_83816458_83816642_83817675_83817816_83820570_83820696_83826757_83826907_83829246_83829870_83830254_83830405_83831294_83831481_83833411_83833599_83834318_83834462_83835987_83836116_83837942_83838016_83839029_83839140_83840029_83840172_83842126_83842245_83843303_83843374_83844728_83844900_83845320_83845475_83845958_83846053_83847803_83847913_83848197_83848257_83849693_83849848_83850058_83850137_83867993_83868105_83868824_83868942_83869604_83869729_83875464_83875534_83938915_83938960_83946621_83946693_83947283
transcript_36027.known	chr3	-	875	8	FSM	ENSMUSG00000033752.8	ENSMUST00000047368.8	875	8	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	22.7497476998793	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	84063093	83995239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_83995482_84000861_84000907_84012241_84012357_84023733_84023809_84041324_84041474_84045475_84045534_84049005_84049072_84062968
transcript_36028.nnic	chr3	-	841	7	NIC	ENSMUSG00000033752.8	novel	875	8	NA	NA	-41	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_3	79.9112354775945	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTCTCCTCTTTTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	84063134	83995239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_83995482_84000861_84000907_84012241_84012357_84041324_84041474_84045475_84045534_84049005_84049072_84062968
transcript_36032.known	chr3	-	4734	11	FSM	ENSMUSG00000027993.17	ENSMUST00000128574.8	4734	11	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_10	27.8354091042327	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	84128152	84071013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_84072557_84074958_84075100_84078766_84078838_84080071_84080241_84084938_84085107_84085381_84085486_84097819_84099569_84100527_84100680_84115480_84115719_84117479_84117662_84127935
transcript_36034.known	chr3	-	664	3	FSM	ENSMUSG00000027993.17	ENSMUST00000140568.2	664	3	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	13	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84097830	84084557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_84085107_84085381_84085486_84097819
transcript_36035.known	chr3	-	1343	9	FSM	ENSMUSG00000074513.10	ENSMUST00000143514.3	1343	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	63.3733974156349	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTCCCCTGGAAAAGAAGGA	NA	False	NA	NA	False	NA	NA	NA	84489932	84405042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84436476_84436573_84441893_84442003_84455240_84455343_84489720
transcript_36039.known	chr3	-	2799	8	FSM	ENSMUSG00000074513.10	ENSMUST00000098990.10	2799	8	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_6	7.88954358370519	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGCCCTGTCCTTAT	NA	False	NA	-3	True	ATTAAA	-16	NA	84489841	84403399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_84405199_84417114_84417290_84422939_84423098_84426788_84427011_84434992_84435106_84441893_84442003_84455240_84455343_84489720
transcript_3605.known	chr10	-	1525	8	FSM	ENSMUSG00000040006.14	ENSMUST00000124838.2	1525	8	0	0	0	0	multi-exon	TRUE	canonical	3	252	junction_3	35.482102415679	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAGAATTGCTTTATTT	7489	False	NA	-10	True	AATAAA	-8	NA	7656655	7643719	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_7644350_7646120_7646285_7649061_7649196_7649711_7649869_7650981_7651134_7653537_7653635_7655066_7655127_7656524
transcript_36050.known	chr3	+	3469	13	FSM	ENSMUSG00000028085.13	ENSMUST00000127348.8	3469	13	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_6	19.0283049399806	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGGTGCAGTGAAAGAGG	NA	False	NA	NA	False	CATAAA	-18	NA	85481425	85562929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_85481627_85483170_85483322_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85559587_85559723_85561030
transcript_36052.known	chr3	+	1980	12	FSM	ENSMUSG00000028085.13	ENSMUST00000107674.2	1980	12	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_6	12.872547507733	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAGAAACATGGCTGAAAAC	NA	False	NA	NA	False	NA	NA	NA	85481433	85560140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_85481627_85483170_85483322_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85544230_85544365_85552276_85552356_85559587
transcript_36054.nnic	chr3	+	1823	11	NIC	ENSMUSG00000028085.13	novel	3469	13	NA	NA	-31	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	53.8004646820081	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCAGATGCCGTGGGTGC	NA	False	NA	9	True	AATAAA	-13	NA	85481394	85561465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_85481627_85483170_85483322_85509166_85509281_85511687_85511887_85512321_85512445_85518658_85518773_85520769_85520855_85523921_85523967_85526130_85526321_85559587_85559723_85561030
transcript_36056.nnic	chr3	+	785	4	NNC	ENSMUSG00000028085.13	novel	1820	12	NA	NA	64303	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	88.7280489285472	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCAGATGCCGTGGGTGC	NA	False	NA	9	True	AATAAA	-13	NA	85545804	85561465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_85545941_85552276_85552356_85559587_85559723_85561030
transcript_36057.nnic	chr3	+	598	3	NNC	ENSMUSG00000028085.13	novel	1820	12	NA	NA	-31	23847	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	93.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTGTGTTTTACTGCA	NA	False	NA	NA	False	NA	NA	NA	85481394	85507195	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_85481627_85483170_85483322_85506980
transcript_36058.known	chr3	-	949	6	FSM	ENSMUSG00000049013.4	ENSMUST00000061343.4	949	6	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_2	0.894427190999916	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCAGGAGCTGCTGCTGTT	NA	False	NA	NA	False	NA	NA	NA	85909798	85901116	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_85901388_85904518_85904686_85905360_85905621_85907688_85907852_85908192_85908238_85909755
transcript_36060.known	chr3	-	977	6	FSM	ENSMUSG00000028081.7	ENSMUST00000029722.7	977	6	0	0	0	0	multi-exon	FALSE	canonical	3	3673	junction_2	2509.92074775281	16309	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTCTGTCCATTGATTTG	NA	False	NA	NA	False	AATAAA	-21	NA	86050009	86045246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_86045418_86045789_86045900_86046346_86046556_86048545_86048734_86049004_86049109_86049814
transcript_36066.known	chr3	-	3486	16	FSM	ENSMUSG00000028078.15	ENSMUST00000195561.6	3486	16	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_11	36.9688156874593	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAATCCATGGGGTGGGT	NA	False	NA	-9	True	AATAAA	-14	NA	86827642	86693465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_86694720_86699301_86699419_86700525_86700607_86701123_86701221_86706317_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
transcript_36068.known	chr3	-	2066	12	FSM	ENSMUSG00000028078.15	ENSMUST00000194452.2	2066	12	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_7	39.3729781062936	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACACACCTTTCTCTGT	NA	False	NA	NA	False	AATAAA	-20	NA	86827681	86706227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_86706396_86706767_86706902_86712890_86713038_86713428_86713549_86720983_86721042_86722396_86722506_86723664_86723738_86731942_86732038_86739039_86739142_86743611_86743715_86813191_86813524_86827056
transcript_3607.known	chr10	-	1405	1	FSM	ENSMUSG00000040006.14	ENSMUST00000188270.2	1405	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAATTTCAACTCC	NA	False	NA	NA	False	NA	NA	NA	7668588	7667183	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_7667200_7668600
transcript_36070.known	chr3	+	1243	7	FSM	ENSMUSG00000041750.14	ENSMUST00000041920.5	1243	7	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_4	26.2408714286194	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTATGTGCGGAGTG	NA	False	NA	NA	False	ATTAAA	-17	NA	86893892	86896840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_86894013_86894294_86894568_86894849_86895129_86895584_86895662_86895663_86895863_86896457_86896555_86896642
transcript_36071.known	chr3	+	1131	6	FSM	ENSMUSG00000041750.14	ENSMUST00000192481.2	1131	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	25.3929123969662	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTATGTGCGGAGTG	NA	False	NA	NA	False	ATTAAA	-17	NA	86893892	86896840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_86894013_86894294_86894454_86894849_86895129_86895584_86895863_86896457_86896555_86896642
transcript_36074.known	chr3	+	1527	6	FSM	ENSMUSG00000041750.14	ENSMUST00000194208.6	1527	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	24.5568727650733	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTTATTGTTTTATTA	NA	False	NA	2	True	AATAAA	-14	NA	86893857	86897087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_86894013_86894294_86894568_86894849_86895129_86895584_86895863_86896457_86896555_86896642
transcript_36078.known	chr3	-	1946	6	FSM	ENSMUSG00000028076.13	ENSMUST00000029717.4	1946	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	13.2	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATCCAGAGGTTTTACTT	NA	False	NA	NA	False	AATAAA	-20	NA	86906748	86903140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_86903909_86903996_86904094_86904644_86904924_86905378_86905658_86905939_86906213_86906498
transcript_3608.known	chr10	+	3471	13	FSM	ENSMUSG00000015757.11	ENSMUST00000015901.11	3471	13	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_12	33.3716446503115	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGCATGTGTTCTCTCT	1122	False	NA	14	True	NA	NA	NA	7668654	7698899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7686125_7686223_7690427_7690576_7696715
transcript_36080.nic	chr3	-	2613	4	NIC	ENSMUSG00000028076.13	novel	1946	6	NA	NA	-30	0	intron_retention	FALSE	canonical	3	57	junction_3	13.490737563232	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATCCAGAGGTTTTACTT	NA	False	NA	NA	False	AATAAA	-20	NA	86906678	86903140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_86903909_86903996_86904094_86904644_86906213_86906498
transcript_36081.known	chr3	-	7236	16	FSM	ENSMUSG00000041734.16	ENSMUST00000159976.8	7236	16	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_15	12.9144191593049	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGTTCTGTGTTATTTTA	NA	False	NA	NA	False	AAAAAG	-3	NA	87082007	86985899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_86990928_86991173_86991252_86992111_86992252_86992388_86992497_86993688_86993888_86995472_86995574_86995665_86995793_86996457_86996586_86996788_86996938_86997102_86997209_86997764_86997916_86999411_86999570_87002943_87003094_87005048_87005214_87048283_87048427_87081702
transcript_36082.known	chr3	-	7278	16	FSM	ENSMUSG00000041734.16	ENSMUST00000107618.9	7278	16	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_15	10.3850319637875	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGTACCATGTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	87082054	86985907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_86990928_86991173_86991252_86992111_86992252_86992388_86992497_86993688_86993888_86995472_86995574_86995665_86995793_86996457_86996586_86996788_86996938_86997102_86997209_86997764_86997916_86999411_86999570_87002943_87003094_87005048_87005214_87048283_87048430_87081702
transcript_36087.known	chr3	-	2588	17	FSM	ENSMUSG00000028072.7	ENSMUST00000029712.5	2588	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	2.97909382195325	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTCTCTTGGCCATTC	NA	False	NA	NA	False	NA	NA	NA	87702469	87685550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_87685907_87686942_87687102_87687377_87687619_87688737_87688911_87689047_87689179_87689457_87689605_87690031_87690135_87690380_87690437_87690593_87690612_87690976_87691307_87693274_87693408_87695623_87695767_87695928_87696081_87696923_87696993_87698680_87698753_87698976_87699052_87702239
transcript_36088.known	chr3	-	2099	7	FSM	ENSMUSG00000004895.10	ENSMUST00000005015.10	2099	7	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_5	35.6401770789964	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGGTGTCTGGATCTCAGA	2299	False	NA	1	True	AATAAA	-27	NA	87792915	87766209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_87766654_87767452_87767519_87769437_87769582_87774621_87774718_87776889_87777457_87779516_87779565_87792181
transcript_36090.known	chr3	+	2245	6	FSM	ENSMUSG00000004897.17	ENSMUST00000005017.15	2245	6	0	0	0	0	multi-exon	FALSE	canonical	3	2720	junction_5	175.133549041867	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGACTAATTCTTTTCAA	NA	False	NA	25	True	AATAAA	-21	NA	87813627	87823439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_87814022_87820397_87820475_87820619_87820759_87821358_87821545_87821779_87821998_87822208
transcript_36092.nic	chr3	+	1493	6	NIC	ENSMUSG00000004897.17	novel	377	4	NA	NA	-21	-409	combination_of_known_junctions	FALSE	canonical	1	5	junction_1	1168.18885459501	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACCCAACCCACAAAAGAAGA	NA	False	NA	68	True	AATAAA	-28	NA	87817319	87823030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_87817371_87820397_87820475_87820619_87820759_87821358_87821545_87821779_87821998_87822208
transcript_36101.known	chr3	-	2492	8	FSM	ENSMUSG00000004896.17	ENSMUST00000005016.16	2492	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	29.6922995583236	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTGGAGCCTGTGTCAC	9443	False	NA	NA	False	AATAAA	-13	NA	87837451	87830211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_87831220_87831650_87831836_87832253_87832739_87834037_87834182_87834361_87834425_87834869_87835063_87835230_87835356_87837162
transcript_36103.nic	chr3	+	1033	7	NIC	ENSMUSG00000019710.14	novel	1339	6	NA	NA	-19	-228	combination_of_known_junctions	FALSE	canonical	3	77	junction_1	348.953992510315	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTTGTCCACACTACCCC	NA	False	NA	37	True	AATAAA	-15	NA	87826793	87830741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_87827013_87827109_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
transcript_3611.nic	chr10	+	3452	12	NIC	ENSMUSG00000015757.11	novel	3471	13	NA	NA	-14	-572	intron_retention	FALSE	canonical	3	182	junction_11	34.8541233910046	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTTACTTTTTTCTT	1108	False	NA	10	True	AGTAAA	-15	NA	7668640	7698327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7686125_7686223_7690427_7690576_7696715
transcript_36111.known	chr3	-	3157	7	FSM	ENSMUSG00000004896.17	ENSMUST00000160648.8	3157	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	31.4046174948844	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACAGACCTCTGAGTTCC	9460	False	NA	-2	True	NA	NA	NA	87837434	87829907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_87831220_87831650_87832739_87834037_87834182_87834361_87834425_87834869_87835023_87835230_87835356_87837162
transcript_36113.known	chr3	+	1226	6	FSM	ENSMUSG00000019710.14	ENSMUST00000019854.13	1226	6	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_1	297.101329515706	249	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTTAAAAGCTTTATAAAT	NA	False	NA	26	True	AATAAA	-28	NA	87826812	87830979	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_87827013_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
transcript_36115.known	chr3	+	1339	6	FSM	ENSMUSG00000019710.14	ENSMUST00000119968.8	1339	6	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_1	165.189103756876	351	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAACAGAAGTCTTAAAAG	NA	False	NA	16	True	AATAAA	-18	NA	87826812	87830969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_87827136_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
transcript_36117.known	chr3	+	1115	6	FSM	ENSMUSG00000019710.14	ENSMUST00000121920.8	1115	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	351.330841230883	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTCTTAAAAGCTTTATAAAT	NA	False	NA	26	True	AATAAA	-28	NA	87826869	87830979	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_87826959_87829123_87829356_87829437_87829534_87829694_87829799_87830241_87830373_87830516
transcript_3612.nnic	chr10	+	1264	11	NNC	ENSMUSG00000015757.11	novel	3471	13	NA	NA	-14	2227	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	82.698790801317	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTAGTAGGCTGTATTGA	1108	False	NA	NA	False	AATAAA	-17	NA	7668640	7685357	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_7668785_7671407_7671476_7671560_7671626_7673521_7673640_7674178_7674322_7675316_7675414_7676497_7676615_7677608_7677734_7680719_7680787_7683034_7683147_7685149
transcript_36121.known	chr3	+	931	4	FSM	ENSMUSG00000004885.6	ENSMUST00000005019.6	931	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	3.29983164553722	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCTGTGGCTCCCTGAG	8831	False	NA	8	True	ATTAAA	-19	NA	87855972	87860683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_87856218_87859421_87859601_87859784_87859902_87860293
transcript_36123.known	chr3	+	959	9	FSM	ENSMUSG00000028069.17	ENSMUST00000194258.6	959	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	81.6783898898601	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAGGAAGAAGAAGAAGAGGC	1735	False	NA	NA	False	NA	NA	NA	87950430	87962507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_87950487_87950773_87950909_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
transcript_36124.known	chr3	+	1630	8	FSM	ENSMUSG00000028069.17	ENSMUST00000029707.13	1630	8	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	22.2417148068898	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGTCTTTGTTTTGTTTT	1719	False	NA	36	True	TTTAAA	-25	NA	87950414	87963297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_87950487_87958468_87958597_87958979_87959054_87959151_87959245_87959338_87959426_87961675_87961768_87962009_87962061_87962264
transcript_36133.known	chr3	-	908	6	FSM	ENSMUSG00000028070.8	ENSMUST00000029708.8	908	6	0	0	0	0	multi-exon	TRUE	canonical	3	839	junction_3	34.2963554915096	800	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGAGTCTTCTGGCCTTAA	NA	False	NA	-4	True	AATAAA	-25	NA	87965802	87963826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_87964084_87964292_87964441_87965030_87965145_87965227_87965339_87965436_87965546_87965633
transcript_36139.known	chr3	+	5756	38	FSM	ENSMUSG00000028068.15	ENSMUST00000071812.11	5756	38	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_11	23.9826757536325	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTGCGTTGTTGCTATAG	NA	False	NA	19	True	AATAAA	-20	NA	87989277	88028355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_87989400_87991237_87991326_87993456_87993614_87994584_87994663_87996200_87996278_87996967_87997036_87997123_87997238_87997444_87997624_87998042_87998122_87998777_87998942_87999718_87999807_88001890_88002055_88004208_88004367_88005624_88005747_88006163_88006328_88007932_88008024_88008734_88008903_88008984_88009125_88009203_88009375_88011366_88011451_88011607_88011680_88011772_88011843_88014818_88015028_88015667_88015821_88016113_88016278_88016578_88016804_88017301_88017443_88019610_88019696_88019904_88020138_88020406_88020540_88020653_88020757_88021230_88021358_88022210_88022299_88023210_88023424_88024086_88024254_88024505_88024608_88024982_88025092_88027469
transcript_36141.nic	chr3	-	1288	8	ISM	ENSMUSG00000104445.2	ENSMUST00000171887.4	1937	10	6837	256	6837	-256	3prime_fragment	TRUE	canonical	2	4	junction_4	1.39970842444753	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACACCTGTGTGCGCC	6135	False	NA	NA	False	GATAAA	-18	NA	88155179	88150436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_88150756_88150899_88150974_88151831_88151954_88152439_88152574_88152742_88152881_88153121_88153289_88154738_88154887_88154993
transcript_36142.nnic	chr3	-	562	5	NNC	ENSMUSG00000010538.15	novel	584	4	NA	NA	-9	3	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	82.9016736863617	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACATGGGTCTGAGTCTGCT	NA	False	NA	NA	False	CATAAA	-17	NA	88204212	88190060	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_88190292_88193307_88193377_88194404_88194525_88202697_88202758_88204130
transcript_36144.known	chr3	-	584	4	FSM	ENSMUSG00000010538.15	ENSMUST00000107556.10	584	4	0	0	0	0	multi-exon	TRUE	canonical	3	152	junction_3	20.138409955991	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGACATGGGTCTGAGTCT	NA	False	NA	NA	False	CATAAA	-14	NA	88204306	88190063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88190292_88194404_88194525_88202697_88202758_88204130
transcript_36146.nic	chr3	-	1373	3	ISM	ENSMUSG00000010538.15	ENSMUST00000107556.10	584	4	133	3191	-28	-3188	5prime_fragment	FALSE	canonical	3	152	junction_2	22.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGCTGGTGAGATGGCTCA	NA	False	NA	NA	False	NA	NA	NA	88204173	88193254	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_88194525_88202697_88202758_88204130
transcript_36147.nnic	chr3	-	1064	3	NNC	ENSMUSG00000010538.15	novel	600	2	NA	NA	-6	628	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	76	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAAACAAACAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	88204209	88201602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_88202443_88202612_88202758_88204130
transcript_36154.known	chr3	+	1977	14	FSM	ENSMUSG00000001416.14	ENSMUST00000001452.14	1977	14	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_3	121.304155843285	3316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCGTTGTCATGTGTTTTT	3804	False	NA	23	True	ATTAAA	-15	NA	88204422	88229074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
transcript_36160.known	chr3	+	1943	13	FSM	ENSMUSG00000001416.14	ENSMUST00000168062.8	1943	13	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_3	126.158630303281	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCGGCAAACTGGTGCT	3876	False	NA	NA	False	NA	NA	NA	88204494	88228814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88204574_88206648_88206711_88208106_88208158_88208235_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320
transcript_36168.known	chr3	+	2056	12	FSM	ENSMUSG00000001416.14	ENSMUST00000167718.2	2056	12	0	0	0	0	multi-exon	FALSE	canonical	3	2432	junction_7	97.6323005756931	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACCGGCAAACTGGTGCT	3841	False	NA	NA	False	NA	NA	NA	88204459	88228814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88204574_88206648_88206711_88208106_88208299_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320
transcript_3617.known	chr10	+	5060	3	FSM	ENSMUSG00000047648.14	ENSMUST00000129456.8	5060	3	0	0	0	0	multi-exon	FALSE	canonical	3	746	junction_2	70.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTAATTTTTGTTTTGTTTT	7592	False	NA	NA	False	AATAAA	-25	NA	11157073	11173796	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_11157245_11165263_11167317_11170960
transcript_36170.known	chr3	+	1804	12	FSM	ENSMUSG00000001416.14	ENSMUST00000164166.8	1804	12	0	0	0	0	multi-exon	FALSE	canonical	1	19	junction_2	744.224284153619	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCGTTGTCATGTGTTTT	3862	False	NA	22	True	ATTAAA	-14	NA	88204480	88229073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88204574_88206648_88206711_88210074_88210172_88212319_88212438_88216467_88216655_88218979_88219130_88220548_88220682_88220862_88220945_88225652_88225834_88227766_88228013_88228320_88228453_88228750
transcript_36172.known	chr3	+	1831	1	FSM	ENSMUSG00000001416.14	ENSMUST00000193666.2	1831	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAAAAAAGC	3805	False	NA	NA	False	NA	NA	NA	88204423	88206254	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88204400_88206300
transcript_36173.known	chr3	+	472	2	FSM	ENSMUSG00000001416.14	ENSMUST00000164122.2	472	2	0	0	0	0	multi-exon	FALSE	canonical	3	2565	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACCGTTGTCATGTGTT	865	False	NA	20	True	ATTAAA	-12	NA	88228301	88229071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88228453_88228750
transcript_36178.known	chr3	+	4219	6	FSM	ENSMUSG00000001418.14	ENSMUST00000177005.8	4219	6	0	0	0	0	multi-exon	FALSE	canonical	3	936	junction_4	66.9489357645064	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAATAAAATTTA	3995	False	NA	NA	False	NA	NA	NA	88232329	88238620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88232509_88232983_88233239_88233421_88233620_88233717_88233937_88235163_88235421_88235509
transcript_36182.known	chr3	+	1017	5	FSM	ENSMUSG00000001418.14	ENSMUST00000001454.14	1017	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	447.743997726379	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCACTCTCCAGAGGGAA	4054	False	NA	NA	False	CATAAA	-5	NA	88232388	88235675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88232509_88232983_88233239_88233717_88233937_88235163_88235421_88235509
transcript_36184.known	chr3	+	960	5	FSM	ENSMUSG00000001418.14	ENSMUST00000176425.2	960	5	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	416.550717200199	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCCACTCTCCAGAGGGAA	4054	False	NA	NA	False	CATAAA	-5	NA	88232388	88235675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88232509_88233421_88233620_88233717_88233937_88235163_88235421_88235509
transcript_36187.known	chr3	-	2406	4	FSM	ENSMUSG00000001420.14	ENSMUST00000001456.11	2406	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	5.18544972870135	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAAATAAGAGAGACTGG	NA	False	NA	NA	False	NA	NA	NA	88241811	88235961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88237240_88239746_88239961_88240198_88240990_88241688
transcript_36190.known	chr3	-	2053	4	FSM	ENSMUSG00000001420.14	ENSMUST00000107553.8	2053	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	8.48528137423857	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGTGGCTCGTTCATT	NA	False	NA	NA	False	AATAAA	-11	NA	88241575	88236352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88237240_88239746_88239961_88240198_88240990_88241414
transcript_36192.nic	chr3	+	1196	5	ISM	ENSMUSG00000001415.11	ENSMUST00000192057.6	3119	12	-51	6789	0	-1656	5prime_fragment	FALSE	canonical	3	289	junction_3	7.49583217528247	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGCAGCTCAGAGATGCAT	NA	False	NA	NA	False	NA	NA	NA	88243566	88253247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669
transcript_36195.known	chr3	+	4448	22	FSM	ENSMUSG00000001415.11	ENSMUST00000001451.11	4448	22	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_5	44.0686436309756	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCCTGCTGTGTCTTCT	NA	False	NA	13	True	AATAAA	-20	NA	88243566	88269645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88243805_88249164_88249264_88249747_88249872_88250186_88250344_88252669_88252760_88253751_88253842_88254824_88254904_88256448_88256575_88256682_88256752_88257322_88257532_88258003_88258142_88258285_88258889_88260269_88260446_88261182_88261259_88261838_88262015_88262884_88263044_88265959_88266020_88266333_88266494_88266854_88266946_88267637_88267713_88268060_88268200_88268331
transcript_36196.known	chr3	-	2051	6	FSM	ENSMUSG00000074489.10	ENSMUST00000107542.2	2051	6	0	0	0	0	multi-exon	TRUE	canonical	3	20	junction_5	10.571660229122	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTGGAGTCTG	7128	False	NA	NA	False	AATAAA	-13	NA	88280050	88275928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88277434_88278787_88279845
transcript_36197.nnic	chr3	-	727	5	NIC	ENSMUSG00000074489.10	novel	2051	6	NA	NA	-28	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_3	35.14612354158	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCTGGGCTGGAGTCTG	7100	False	NA	NA	False	AATAAA	-13	NA	88280078	88275928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_88276196_88276401_88276460_88276602_88276636_88276779_88276916_88279845
transcript_3620.nic	chr10	+	2485	2	ISM	ENSMUSG00000047648.14	ENSMUST00000129456.8	5060	3	-24	6243	-24	-3709	5prime_fragment	FALSE	canonical	3	887	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAGTTTTCACAGTGA	7568	False	NA	NA	False	NA	NA	NA	11157049	11167553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_11157245_11165263
transcript_36200.known	chr3	-	795	3	FSM	ENSMUSG00000028066.16	ENSMUST00000193338.6	795	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	8.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCTGTGAGGAGGTTT	NA	False	NA	-6	True	AATAAA	-16	NA	88317633	88301449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88301878_88303211_88303408_88317462
transcript_36201.known	chr3	-	1007	5	FSM	ENSMUSG00000028066.16	ENSMUST00000056370.13	1007	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	377.05205210952	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATCTGTGAGGAGGTTT	NA	False	NA	-6	True	AATAAA	-16	NA	88317638	88301449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88301878_88303211_88303408_88306441_88306543_88307017_88307124_88317462
transcript_36202.known	chr3	-	3577	4	FSM	ENSMUSG00000050144.14	ENSMUST00000057935.9	3577	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	3.85861230093008	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACTCTGGCTTTTGGGTT	4066	False	NA	-4	True	ATTAAA	-18	NA	88332446	88317805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332034
transcript_36205.known	chr3	-	3429	4	FSM	ENSMUSG00000050144.14	ENSMUST00000193433.6	3429	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	28.7672653471886	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTCTGGCTTTTGGGTTT	4097	False	NA	-3	True	ATTAAA	-19	NA	88332415	88317804	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332152
transcript_36206.known	chr3	-	3504	4	FSM	ENSMUSG00000050144.14	ENSMUST00000195657.6	3504	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	25.4689353265241	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAACTCTGGCTTTTGGGTT	4093	False	NA	-4	True	ATTAAA	-18	NA	88332419	88317805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88320205_88323294_88323423_88327807_88328446_88332080
transcript_36207.known	chr3	-	2357	7	FSM	ENSMUSG00000028064.18	ENSMUST00000149145.2	2357	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	14.3614066163451	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTTATGGCGTGCTGTG	NA	False	NA	NA	False	ATTAAA	-20	NA	88357345	88343268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88344560_88345109_88345208_88345489_88345648_88345749_88345869_88348004_88348186_88355297_88355449_88356986
transcript_36208.known	chr3	-	2108	5	FSM	ENSMUSG00000028064.18	ENSMUST00000156108.8	2108	5	0	0	0	0	multi-exon	TRUE	canonical	3	30	junction_4	4.71036092035419	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTTATGGCGTGCTGTG	NA	False	NA	NA	False	ATTAAA	-20	NA	88348446	88343268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88344560_88345109_88345208_88345489_88345648_88345749_88345869_88348004
transcript_3621.known	chr10	+	613	1	FSM	ENSMUSG00000045455.9	ENSMUST00000052902.9	613	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	77	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAACTGTATATGGGACT	NA	False	NA	NA	False	GATAAA	-17	NA	11484966	11485579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_11485000_11485600
transcript_36210.known	chr3	-	2021	10	FSM	ENSMUSG00000028063.16	ENSMUST00000120377.8	2021	10	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_5	22.6377811589932	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGCCCTGGCCTTTCT	NA	False	NA	-1	True	ATTAAA	-19	NA	88410614	88390511	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88390721_88391133_88391254_88391353_88391462_88391921_88392145_88392233_88392455_88393510_88393637_88393766_88393938_88394114_88394241_88395581_88395739_88410054
transcript_36211.known	chr3	-	1081	5	FSM	ENSMUSG00000008601.13	ENSMUST00000008745.13	1081	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	5.2618912949623	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTGCTGCCTTCCATCTG	5701	False	NA	0	True	AATAAA	-24	NA	88455607	88449335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88449678_88450007_88450089_88450626_88450821_88452367_88452564_88455339
transcript_36212.nic	chr3	-	1101	4	ISM	ENSMUSG00000008601.13	ENSMUST00000008745.13	1081	5	2756	0	-2030	0	3prime_fragment	TRUE	canonical	3	11	junction_1	1.69967317119759	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTGCTGCCTTCCATCTG	8457	False	NA	0	True	AATAAA	-24	NA	88452851	88449335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_88449678_88450007_88450089_88450626_88450821_88452367
transcript_36215.known	chr3	-	568	4	FSM	ENSMUSG00000028062.16	ENSMUST00000119002.2	568	4	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_3	1254.14043161929	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGTGTCTCACCTGCTTT	1142	False	NA	-7	True	AATAAA	-13	NA	88460166	88457126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460036
transcript_36216.known	chr3	-	668	4	FSM	ENSMUSG00000028062.16	ENSMUST00000029698.15	668	4	0	0	0	0	multi-exon	FALSE	canonical	3	2467	junction_3	160.918889161244	861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTCTCACCTGCTTTC	977	False	NA	-6	True	AATAAA	-14	NA	88460331	88457125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88457312_88458002_88458093_88459661_88459825_88460102
transcript_36219.known	chr3	-	567	2	FSM	ENSMUSG00000028062.16	ENSMUST00000145172.2	567	2	0	0	0	0	multi-exon	FALSE	canonical	3	2467	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGAGTACGGTGCTGGCC	927	False	NA	NA	False	AATAAA	-22	NA	88460381	88459536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88459825_88460102
transcript_36220.known	chr3	-	438	3	FSM	ENSMUSG00000028062.16	ENSMUST00000156421.2	438	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	1321	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGTGTCTCACCTGCTT	1108	False	NA	-8	True	AATAAA	-12	NA	88460200	88457127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88457312_88458002_88458093_88460036
transcript_36222.known	chr3	+	3330	11	FSM	ENSMUSG00000008604.12	ENSMUST00000008748.8	3330	11	0	0	0	0	multi-exon	FALSE	canonical	3	1295	junction_8	115.436605979213	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGGTGGTTTGTTTGTTG	6105	False	NA	NA	False	AATAAA	-26	NA	88461064	88477032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88461220_88462644_88462797_88463096_88463300_88463963_88464227_88466924_88467084_88470414_88470641_88471676_88471817_88472313_88472398_88472519_88472636_88472997_88473185_88475387
transcript_36227.known	chr3	+	1379	6	FSM	ENSMUSG00000008604.12	ENSMUST00000194303.6	1379	6	0	0	0	0	multi-exon	FALSE	canonical	3	1330	junction_4	125.024797540328	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGCTCCATGAACATGTCT	6111	False	NA	NA	False	AATAAA	-15	NA	88461070	88470867	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88461220_88462644_88462797_88463096_88463300_88463963_88464227_88466924_88467084_88470414
transcript_3624.known	chr10	-	5751	25	FSM	ENSMUSG00000019820.12	ENSMUST00000219003.2	5751	25	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_24	17.9698339045066	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTGATGTTTGGCTGT	NA	False	NA	-3	True	AATAAA	-19	NA	12424623	12257933	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_12259941_12261261_12261285_12277054_12277148_12278626_12278736_12281597_12281839_12282179_12282339_12289679_12289746_12290924_12290991_12291194_12291234_12297340_12297478_12312024_12312137_12315370_12315538_12317679_12317838_12323750_12323837_12331106_12331309_12339029_12339105_12340924_12340987_12351014_12351076_12354156_12354236_12356967_12357115_12362129_12362399_12377121_12377252_12401081_12401239_12413784_12413958_12423690
transcript_36244.known	chr3	+	620	6	FSM	ENSMUSG00000041355.14	ENSMUST00000192495.6	620	6	0	0	0	0	multi-exon	FALSE	canonical	1	12	junction_3	1870.91094389872	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTAGACTCCAGAGGGTGT	3616	False	NA	NA	False	AAGAAA	-10	NA	88486973	88495340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88486994_88487186_88487342_88488280_88488346_88491043_88491193_88494171_88494250_88495187
transcript_36245.known	chr3	+	569	6	FSM	ENSMUSG00000041355.14	ENSMUST00000193934.6	569	6	0	0	0	0	multi-exon	FALSE	canonical	1	56	junction_3	1853.85986525411	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACCAGGTTTTTTCTAG	3590	False	NA	NA	False	NA	NA	NA	88486947	88495326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88486994_88487186_88487342_88488280_88488346_88491106_88491193_88494171_88494250_88495187
transcript_36249.known	chr3	+	1059	6	FSM	ENSMUSG00000041355.14	ENSMUST00000195014.6	1059	6	0	0	0	0	multi-exon	FALSE	canonical	3	3697	junction_1	473.044775893361	3912	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	3557	False	NA	15	True	AATAAA	-17	NA	88486914	88495726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88486994_88487186_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
transcript_3625.known	chr10	-	1050	3	FSM	ENSMUSG00000097378.9	ENSMUST00000181073.9	1050	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATACACAGTGAGTGAGTT	NA	False	NA	NA	False	AATAAA	-13	NA	12798834	12792391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_12792816_12797352_12797462_12798317
transcript_36254.known	chr3	+	1189	5	FSM	ENSMUSG00000041355.14	ENSMUST00000035785.9	1189	5	0	0	0	0	multi-exon	FALSE	canonical	3	4285	junction_2	286.022180083993	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTTGTCTTGCGTCAA	3620	False	NA	15	True	AATAAA	-17	NA	88486977	88495726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88487342_88488280_88488380_88491083_88491193_88494171_88494250_88495187
transcript_36257.known	chr3	+	3966	23	FSM	ENSMUSG00000028059.17	ENSMUST00000177498.8	3966	23	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	70.6950294581072	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCTAGCTCCATATCTTT	9394	False	NA	NA	False	TTTAAA	-15	NA	88523449	88554839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88523764_88523867_88523962_88537093_88537239_88539217_88539286_88539582_88539641_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
transcript_36259.known	chr3	+	4238	22	FSM	ENSMUSG00000028059.17	ENSMUST00000170653.9	4238	22	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	79.8674923015028	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAGGCTGGAAATGAAGCG	NA	False	NA	11	True	ATTAAA	-13	NA	88528742	88555355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88528907_88537093_88537239_88539217_88539286_88539582_88539641_88540219_88540350_88540564_88540675_88540806_88540954_88541716_88541968_88542289_88542416_88542907_88543026_88543161_88543411_88545577_88545655_88546629_88546800_88547589_88547658_88549732_88549934_88550232_88550347_88550455_88550524_88550651_88550688_88550868_88550920_88551096_88551541_88553483_88553668_88554096
transcript_3626.known	chr10	+	3946	9	FSM	ENSMUSG00000019817.19	ENSMUST00000121325.8	3946	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	54.2331483043351	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAATCTCCATTTTGTTTT	3054	False	NA	NA	False	NA	NA	NA	12966575	13006726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_12966769_12981598_12981638_12988262_12988295_12988677_12988700_12989901_12989965_12992453_12992526_13000599_13000913_13002885_13004741_13005369
transcript_36261.known	chr3	+	2981	14	FSM	ENSMUSG00000028060.15	ENSMUST00000029696.11	2981	14	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_11	33.2047619027415	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTTAATGTGCATTGTT	8	True	NA	16	True	AATAAA	-16	NA	88593109	88620231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88616249_88617136_88617250_88618067_88618160_88618936
transcript_36264.known	chr3	+	2567	14	FSM	ENSMUSG00000028060.15	ENSMUST00000198042.5	2567	14	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_11	80.4603618093109	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTGCAGCGAGAAGAGGGAT	3	True	NA	NA	False	AAGAAA	-34	NA	88593133	88619869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567_88607822_88616086_88616249_88617164_88617250_88618067_88618160_88618936
transcript_36265.known	chr3	+	1922	14	FSM	ENSMUSG00000028060.15	ENSMUST00000198078.2	1922	14	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_9	104.955555541635	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTGGCATAACATCCGTTA	13	False	NA	NA	False	CATAAA	-33	NA	88593143	88619310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607671_88607822_88616086_88616249_88617136_88617250_88618067_88618160_88618936
transcript_36268.known	chr3	+	2388	10	FSM	ENSMUSG00000028060.15	ENSMUST00000200364.5	2388	10	0	0	0	0	multi-exon	FALSE	canonical	3	344	junction_7	30.6195289897731	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTTAAAAAAAATCTGGA	9	True	NA	NA	False	AATGAA	-25	NA	88593139	88608920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88593195_88593650_88593874_88596481_88596611_88596930_88597011_88600382_88600436_88600727_88600892_88603871_88604084_88606155_88606217_88607257_88607316_88607567
transcript_36271.known	chr3	+	993	6	FSM	ENSMUSG00000028057.15	ENSMUST00000172333.8	993	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	24.0881713710277	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACGCATGAACTCATCAGG	2278	False	NA	NA	False	NA	NA	NA	88624205	88636855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88624265_88624632_88624778_88624879_88624966_88633301_88633376_88633586_88633779_88636418
transcript_36272.known	chr3	+	1204	6	FSM	ENSMUSG00000028057.15	ENSMUST00000029692.15	1204	6	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_4	6.67532770731145	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCCTTCAACCTGAACT	2217	False	NA	74	True	NA	NA	NA	88624144	88637034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_88624265_88624632_88624778_88624908_88624966_88633301_88633376_88633586_88633779_88636418
transcript_36276.known	chr3	-	1875	14	FSM	ENSMUSG00000068922.15	ENSMUST00000126245.2	1875	14	0	0	0	0	multi-exon	FALSE	canonical	3	676	junction_13	37.3331396162909	422	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATACGCATTTGTACATTTA	NA	False	NA	-7	True	AATAAA	-44	NA	88821306	88816921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88817218_88817436_88817547_88817620_88817726_88817932_88818118_88818189_88818322_88818593_88818747_88818843_88818979_88819070_88819189_88819332_88819421_88819543_88819608_88820009_88820086_88820164_88820235_88820873_88821010_88821099
transcript_36299.known	chr3	-	4760	13	FSM	ENSMUSG00000068921.15	ENSMUST00000090938.11	4760	13	0	0	0	0	multi-exon	FALSE	canonical	3	805	junction_4	46.7537134591705	216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTGTGTGTGTATT	NA	False	NA	NA	False	NA	NA	NA	88857721	88828109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
transcript_36300.nic	chr3	-	1584	13	NIC	ENSMUSG00000068921.15	novel	4760	13	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_12	242.200444994545	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88857625	88830941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857422
transcript_36301.nic	chr3	-	1704	13	NIC	ENSMUSG00000068921.15	novel	1409	13	NA	NA	-10	0	intron_retention	FALSE	canonical	3	11	junction_12	245.456151322843	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88858498	88830941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858175
transcript_36302.known	chr3	-	1409	13	FSM	ENSMUSG00000068921.15	ENSMUST00000173135.8	1409	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	248.441964495176	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACGGACAGCGGCGGTGGC	NA	False	NA	NA	False	NA	NA	NA	88858488	88831134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858267
transcript_36303.nnic	chr3	-	1463	13	NNC	ENSMUSG00000068921.15	novel	4760	13	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_12	242.742948175408	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88858529	88830941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_88831221_88832600_88832719_88833578_88833669_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88858447
transcript_3631.known	chr10	+	5260	6	FSM	ENSMUSG00000019817.19	ENSMUST00000121646.8	5260	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	38.4416440855487	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCTGTCTTTTCATTTA	3010	False	NA	18	True	AATAAA	-18	NA	12966531	13007438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_12966769_12981598_12981638_12988262_12988295_12992439_12992526_13000599_13000913_13002885
transcript_36316.known	chr3	-	1375	12	FSM	ENSMUSG00000068921.15	ENSMUST00000107491.11	1375	12	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	248.490151458566	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGTATTGGATTTGCAA	NA	False	NA	-7	True	ATTAAA	-17	NA	88857258	88830941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88831221_88832600_88832719_88834317_88834378_88835515_88835675_88835753_88835835_88836702_88836834_88837782_88837876_88838218_88838328_88840871_88840974_88843455_88843561_88850081_88850136_88857174
transcript_36327.known	chr3	-	1382	11	FSM	ENSMUSG00000059743.13	ENSMUST00000196709.5	1382	11	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_10	899.425283166979	494	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	-3	True	AATAAA	-14	NA	89009195	89000894	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89008227_89008444_89009168
transcript_36332.known	chr3	-	1237	10	FSM	ENSMUSG00000059743.13	ENSMUST00000081848.13	1237	10	0	0	0	0	multi-exon	FALSE	canonical	3	1662	junction_9	235.997175124336	2510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGGTTTTATTCTTGT	NA	False	NA	-3	True	AATAAA	-14	NA	89009266	89000894	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89001151_89001537_89001673_89001758_89001837_89002166_89002240_89002320_89002410_89002660_89002784_89002905_89002987_89006606_89006748_89007975_89008139_89009168
transcript_36336.known	chr3	-	1922	9	FSM	ENSMUSG00000041263.15	ENSMUST00000166687.6	1922	9	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_8	11.2354072022335	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATATGTGTCCCTGTG	NA	False	NA	-5	True	AATAAA	-13	NA	88997352	88991287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88991958_88994079_88994203_88995025_88995576_88996106_88996154_88996306_88996413_88996483_88996659_88996791_88996869_88996975_88997075_88997277
transcript_36338.known	chr3	-	3316	10	FSM	ENSMUSG00000041263.15	ENSMUST00000052539.13	3316	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	13.9292746170798	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGATATGTGTCCCTGTG	NA	False	NA	-5	True	AATAAA	-13	NA	89000618	88991287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_88991958_88994079_88994203_88995025_88995576_88996106_88996154_88996306_88996413_88996483_88996659_88996791_88996869_88996975_88997075_88998444_88999869_89000573
transcript_36346.known	chr3	-	2953	1	FSM	ENSMUSG00000059743.13	ENSMUST00000198239.2	2953	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	89009198	89006245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89006200_89009200
transcript_36348.known	chr3	+	2112	13	FSM	ENSMUSG00000068917.13	ENSMUST00000121931.8	2112	13	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	89.4627094877463	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCCCCAATCCCTGGAAT	NA	False	NA	18	True	AATAAA	-19	NA	89072146	89084228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89072414_89074341_89074512_89076001_89076231_89076921_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
transcript_36349.known	chr3	+	2128	13	FSM	ENSMUSG00000068917.13	ENSMUST00000090927.12	2128	13	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	141.611043001596	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCCCCAATCCCTGGAAT	NA	False	NA	18	True	AATAAA	-19	NA	89072124	89084228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89072414_89074341_89074512_89076004_89076231_89076924_89077010_89077355_89077423_89077599_89077717_89080683_89080851_89081503_89081599_89082251_89082382_89082464_89082548_89082698_89082779_89082951_89083043_89083700
transcript_3635.known	chr10	-	2297	11	FSM	ENSMUSG00000019814.6	ENSMUST00000019950.6	2297	11	0	0	0	0	multi-exon	FALSE	canonical	3	645	junction_7	42.5845042239545	257	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTAGGTTTTGATGAGAT	NA	False	NA	NA	False	ATTAAA	-16	NA	13068912	13053883	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_13054741_13054866_13055068_13055398_13055452_13055738_13055879_13056633_13056762_13058022_13058273_13058604_13058741_13061167_13061256_13066318_13066490_13067851_13067984_13068771
transcript_36356.known	chr3	+	1475	9	FSM	ENSMUSG00000028049.16	ENSMUST00000120697.8	1475	9	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_2	249.13701049824	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCATTTCCTGTATCT	NA	False	NA	18	True	ATTAAA	-22	NA	89084796	89090072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89084965_89085296_89085375_89086398_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
transcript_36357.known	chr3	+	1489	9	FSM	ENSMUSG00000028049.16	ENSMUST00000029684.15	1489	9	0	0	0	0	multi-exon	TRUE	canonical	3	743	junction_2	141.598022585063	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCACCCATTTCCTGTATCT	NA	False	NA	18	True	ATTAAA	-22	NA	89084779	89090072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89088481_89088584_89089232_89089351_89089605
transcript_36361.known	chr3	+	1338	8	FSM	ENSMUSG00000028049.16	ENSMUST00000098941.5	1338	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	394.282971004949	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCACCCATTTCCTGTAT	NA	False	NA	16	True	ATTAAA	-20	NA	89084826	89090070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89084965_89085296_89085375_89086401_89086531_89086623_89086745_89087558_89087688_89088035_89088196_89089232_89089351_89089605
transcript_36364.known	chr3	+	3083	12	FSM	ENSMUSG00000032657.16	ENSMUST00000041913.13	3083	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	4.5924839782964	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGGAGTATTCTGTTAT	1723	False	NA	9	True	AATAAA	-20	NA	89090509	89096598	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89091256_89091458_89091516_89091719_89091831_89091936_89092057_89092195_89092304_89092740_89092917_89093040_89093141_89094085_89094156_89094365_89094912_89095382_89095452_89095529_89095784_89095872
transcript_36366.known	chr3	+	2977	11	FSM	ENSMUSG00000032657.16	ENSMUST00000147696.8	2977	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	9.93025679426267	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTGGAGTATTCTGTT	1724	False	NA	7	True	AATAAA	-18	NA	89090510	89096596	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89091256_89091458_89091516_89091719_89091831_89091936_89092057_89092195_89092304_89092743_89092917_89094085_89094156_89094365_89094912_89095382_89095452_89095529_89095784_89095872
transcript_36368.known	chr3	+	1938	12	FSM	ENSMUSG00000028048.12	ENSMUST00000167998.2	1938	12	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	111.217603696091	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGTGCTATCTGTGAC	NA	False	NA	3	True	ATTAAA	-13	NA	89110246	89115988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89110394_89110498_89110668_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114759_89115130_89115295_89115618_89115736_89115823
transcript_36370.known	chr3	+	1779	11	FSM	ENSMUSG00000028048.12	ENSMUST00000077367.11	1779	11	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_1	28.1177879642051	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGCTCCTGTGCTATCTGTG	NA	False	NA	1	True	ATTAAA	-11	NA	89110234	89115986	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89110394_89110778_89110849_89111291_89111484_89111581_89111729_89112753_89112888_89113098_89113272_89113440_89113676_89114533_89114759_89115130_89115295_89115618_89115736_89115823
transcript_36373.known	chr3	-	892	8	FSM	ENSMUSG00000064068.16	ENSMUST00000173477.8	892	8	0	0	0	0	multi-exon	FALSE	canonical	1	38	junction_5	268.396143407312	820	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGATGGCGTTCCTGTTC	NA	False	NA	-148	True	NA	NA	NA	89121147	89116519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89116729_89116811_89116967_89117413_89117491_89117572_89117756_89117890_89117981_89119989_89120070_89120183_89120254_89121119
transcript_36375.known	chr3	-	1197	7	FSM	ENSMUSG00000064068.16	ENSMUST00000119222.9	1197	7	0	0	0	0	multi-exon	FALSE	canonical	3	739	junction_1	41.3417330174835	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAACTGGGATCAAAGAAT	NA	False	NA	-27	True	AATAAA	-10	NA	89121214	89116398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89116729_89116811_89116967_89117413_89117491_89117572_89117756_89117890_89117984_89119989_89120254_89121119
transcript_36376.nic	chr3	-	1590	7	NIC	ENSMUSG00000064068.16	novel	1522	8	NA	NA	-50	0	intron_retention	FALSE	canonical	3	739	junction_1	41.4286535302963	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGGATCAAAGAATCCCTT	NA	False	NA	-22	True	AATAAA	-15	NA	89121269	89116393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_89116729_89116811_89117491_89117572_89117756_89117890_89117984_89119989_89120070_89120183_89120254_89121119
transcript_36378.known	chr3	+	455	2	FSM	ENSMUSG00000028047.12	ENSMUST00000153129.2	455	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCCAGGAAAGACAACAGC	NA	False	NA	-46	True	NA	NA	NA	89133556	89134093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89133751_89133832
transcript_3638.known	chr10	+	2007	8	FSM	ENSMUSG00000019810.16	ENSMUST00000060212.13	2007	8	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_7	35.0731015021425	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTCCCTCATATTCA	NA	False	NA	38	True	AATGAA	-24	NA	13376744	13391287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_13377118_13378814_13379003_13381482_13381823_13382449_13382661_13382978_13383170_13388361_13388471_13390450_13390619_13390860
transcript_36392.known	chr3	+	582	5	FSM	ENSMUSG00000042747.13	ENSMUST00000168900.3	582	5	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	789.56613877496	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTCTTTGTAGCTGTG	7591	False	NA	7	True	AATAAA	-1	NA	89153740	89157016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89153901_89154087_89154240_89154371_89154436_89156380_89156448_89156877
transcript_36393.known	chr3	+	404	2	FSM	ENSMUSG00000042737.10	ENSMUST00000040824.2	404	2	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTTGTGTAGTTTTGAGT	6777	False	NA	17	True	ATTAAA	-18	NA	89173858	89174384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89173914_89174035
transcript_36394.nnic	chr3	-	1006	6	NNC	ENSMUSG00000027953.14	novel	1022	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	53.9051017993659	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177877	89175552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_89175890_89175979_89176100_89176356_89176519_89177133_89177258_89177368_89177447_89177692
transcript_36395.known	chr3	-	1022	6	FSM	ENSMUSG00000027953.14	ENSMUST00000029565.11	1022	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_5	11.5481600266016	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177877	89175552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177258_89177368_89177447_89177692
transcript_36396.nnic	chr3	-	973	6	NNC	ENSMUSG00000027953.14	novel	1022	6	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	59.7280503616182	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177847	89175552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177258_89177368_89177447_89177711
transcript_36399.known	chr3	-	1086	5	FSM	ENSMUSG00000027953.14	ENSMUST00000132445.8	1086	5	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_4	12.4373429638327	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177830	89175552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133_89177447_89177692
transcript_36402.known	chr3	-	785	5	FSM	ENSMUSG00000027953.14	ENSMUST00000107460.8	785	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	61.7758043249944	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177802	89175552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89175906_89175979_89176100_89177133_89177258_89177368_89177447_89177692
transcript_36403.known	chr3	-	1332	4	FSM	ENSMUSG00000027953.14	ENSMUST00000144777.8	1332	4	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_3	10.1434160364686	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTGCAGAGTGATGTGTT	NA	False	NA	-33	True	AATAAA	-15	NA	89177832	89175554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89175906_89175979_89176100_89176356_89176519_89177133
transcript_36404.known	chr3	-	1176	5	FSM	ENSMUSG00000027953.14	ENSMUST00000133575.8	1176	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	61.3697808371514	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCAGAGTGATGTGTTCT	NA	False	NA	-31	True	AATAAA	-17	NA	89177833	89175552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89175906_89175979_89176100_89176356_89176606_89177133_89177447_89177692
transcript_36405.known	chr3	-	1480	5	FSM	ENSMUSG00000027954.10	ENSMUST00000029566.9	1480	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	2.77263412660235	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTCTGCCCCACCATG	1666	False	NA	NA	False	AATAAA	-21	NA	89186952	89179039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89179912_89180078_89180130_89180263_89180330_89183436_89183733_89186757
transcript_36408.known	chr3	-	2975	23	FSM	ENSMUSG00000028041.18	ENSMUST00000029676.12	2975	23	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_3	32.1478056009843	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGCTCCTGGAAGCTGGGT	NA	False	NA	-11	True	AATAAA	-20	NA	89257303	89246946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89247261_89247361_89247487_89247707_89247780_89248169_89248245_89248814_89248885_89249243_89249383_89249595_89249669_89250419_89250498_89250694_89250891_89250979_89251285_89251424_89251518_89251731_89251907_89252012_89252162_89252585_89252671_89252799_89252970_89253075_89253145_89253249_89253316_89254183_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
transcript_36409.known	chr3	-	1034	6	FSM	ENSMUSG00000028041.18	ENSMUST00000155295.8	1034	6	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_5	16.0549057923116	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATAGGTTTTGATTTGCT	NA	False	NA	NA	False	ATTAAA	-24	NA	89257267	89253834	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89254374_89254458_89254536_89254713_89254793_89255175_89255253_89255824_89255935_89257115
transcript_36411.known	chr3	-	1599	4	FSM	ENSMUSG00000028040.8	ENSMUST00000029674.8	1599	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	2.62466929133727	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACCCTTCTTTGTGTGGCC	1612	False	NA	NA	False	AATAAA	-14	NA	89245335	89240696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89241740_89242088_89242158_89242483_89242780_89245144
transcript_36414.nnic	chr3	+	1563	9	NIC	ENSMUSG00000109293.2	novel	2285	16	NA	NA	5544	94	combination_of_known_splicesites	FALSE	canonical	1	2	junction_3	4.26468052730799	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATGAATCTTAAATTATTAT	2918	False	NA	NA	False	AATAAA	-22	NA	89274825	89284950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_89275242_89275397_89275556_89276011_89276177_89278006_89278108_89278839_89278971_89279954_89280083_89280529_89280624_89280731_89280888_89284736
transcript_36418.nic	chr3	-	2177	4	NIC	ENSMUSG00000028042.16	novel	3851	3	NA	NA	4	-1645	combination_of_known_junctions	FALSE	canonical	3	10	junction_3	12.2836838484589	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGTGTATATATATATG	NA	False	NA	NA	False	NA	NA	NA	89300981	89286595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_89287302_89287650_89288823_89300341_89300443_89300783
transcript_3642.known	chr10	+	5741	7	FSM	ENSMUSG00000019810.16	ENSMUST00000121465.3	5741	7	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_3	15.7418409201578	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCACTAGCCCTTGACCTCT	NA	False	NA	NA	False	AATAAA	-20	NA	13376744	13394779	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_13377118_13378814_13379003_13381482_13381823_13382449_13382661_13382978_13383170_13388361_13388471_13390450
transcript_36420.known	chr3	+	599	2	FSM	ENSMUSG00000074466.13	ENSMUST00000152143.2	599	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTGTAGGGTTGTTT	5377	False	NA	NA	False	NA	NA	NA	89299276	89305531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89299610_89305265
transcript_36422.known	chr3	+	923	2	FSM	ENSMUSG00000074466.13	ENSMUST00000145400.8	923	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGTTGTAGGGTTGTTT	5257	False	NA	NA	False	NA	NA	NA	89299156	89305531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89299814_89305265
transcript_36427.nic	chr3	-	2004	8	NIC	ENSMUSG00000042642.14	novel	2238	8	NA	NA	-2	-415	combination_of_known_junctions	FALSE	canonical	2	9	junction_7	114.072300739129	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTGCCTGTTGCTCT	3742	False	NA	-15	True	AGTAAA	-18	NA	89319172	89310388	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89318867
transcript_36428.known	chr3	-	2238	8	FSM	ENSMUSG00000042642.14	ENSMUST00000107426.8	2238	8	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_7	99.0019583397321	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCCTTCTGCTGAGCTGC	3738	False	NA	NA	False	AATAAA	-21	NA	89319176	89309973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319052
transcript_36429.known	chr3	-	2892	8	FSM	ENSMUSG00000042642.14	ENSMUST00000129308.9	2892	8	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_7	45.7504321380282	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAATGAGGGCATGTGTG	3744	False	NA	0	True	AATAAA	-35	NA	89319170	89309275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319090
transcript_36430.nic	chr3	-	1770	8	NIC	ENSMUSG00000042642.14	novel	2238	8	NA	NA	-18	-415	combination_of_known_junctions	FALSE	canonical	3	35	junction_7	105.155666921542	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTGCCTGTTGCTCT	3719	False	NA	-15	True	AGTAAA	-18	NA	89319195	89310388	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89318464_89318688_89319124
transcript_36433.nnic	chr3	-	1577	7	NIC	ENSMUSG00000042642.14	novel	2892	8	NA	NA	-14	-415	combination_of_known_splicesites	FALSE	canonical	2	6	junction_6	122.343437366565	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTGGTGCCTGTTGCTCT	3723	False	NA	-15	True	AGTAAA	-18	NA	89319191	89310388	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_89310609_89310702_89310777_89312887_89313078_89313161_89313261_89314715_89314864_89315728_89316474_89319090
transcript_36438.known	chr3	-	766	3	FSM	ENSMUSG00000028044.7	ENSMUST00000107422.2	766	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	1287.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATGTATTGGAAATTTTGC	NA	False	NA	23	True	NA	NA	NA	89325324	89322863	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89323271_89323580_89323709_89325093
transcript_36439.known	chr3	-	849	3	FSM	ENSMUSG00000028044.7	ENSMUST00000029679.4	849	3	0	0	0	0	multi-exon	FALSE	canonical	3	2335	junction_2	153.5	1764	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTGTGGTTATAAGACTGT	NA	False	NA	-12	True	ATTAAA	-22	NA	89325690	89322778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89323271_89323580_89323709_89325461
transcript_36441.known	chr3	+	3079	13	FSM	ENSMUSG00000042626.14	ENSMUST00000107417.9	3079	13	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	89.6222008705928	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGCCTCTCAACTCCTC	NA	False	NA	20	True	ATTAAA	-17	NA	89325920	89337322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89326017_89329484_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
transcript_36444.nic	chr3	+	3001	12	NIC	ENSMUSG00000042626.14	novel	3250	13	NA	NA	-27	0	combination_of_known_junctions	TRUE	canonical	3	123	junction_1	129.584906273394	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGCCTCTCAACTCCTC	NA	False	NA	20	True	ATTAAA	-17	NA	89325830	89337322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_89326017_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
transcript_36445.known	chr3	+	2617	12	FSM	ENSMUSG00000042626.14	ENSMUST00000094378.10	2617	12	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_1	37.6308735565373	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCACGCCTTTAATCACAGC	NA	False	NA	NA	False	NA	NA	NA	89328934	89336406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89329653_89330232_89330304_89330814_89330879_89331003_89331124_89331496_89331551_89331861_89331914_89332072_89332200_89333821_89334009_89334094_89334165_89334245_89334378_89334514_89334754_89335623
transcript_36451.nic	chr3	+	2510	11	NIC	ENSMUSG00000042613.10	novel	4479	11	NA	NA	0	-1990	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	22.5690052948729	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAGAAGAAGAAAAAAAA	4368	False	NA	NA	False	NA	NA	NA	89344012	89356269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_89344088_89346823_89346909_89350407_89350556_89350758_89350824_89350902_89351063_89352758_89352987_89353098_89353123_89353397_89353481_89353586_89353719_89354352_89355573_89355979
transcript_36453.known	chr3	+	4479	11	FSM	ENSMUSG00000042613.10	ENSMUST00000038942.10	4479	11	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	11.4367827643966	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGGTTCTTCTCTTCTC	4368	False	NA	35	True	AATAAA	-24	NA	89344012	89358259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89344088_89346823_89346909_89350428_89350556_89350758_89350824_89350902_89351063_89352758_89352987_89353098_89353123_89353397_89353481_89353586_89353719_89354352_89355573_89355979
transcript_36464.nnic	chr3	+	1122	5	NNC	ENSMUSG00000027952.17	novel	978	4	NA	NA	-2174	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_1	244.099749078118	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCAGAGCTGGAGACTGAT	NA	False	NA	17	True	AATAAA	-16	NA	89364250	89376316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_89364530_89369188_89369253_89371602_89371756_89374853_89374984_89375820
transcript_36467.known	chr3	+	1194	5	FSM	ENSMUSG00000027952.17	ENSMUST00000029564.12	1194	5	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_1	43.1878165690279	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCTGGAGACTGATGATT	140	False	NA	21	True	AATAAA	-20	NA	89366424	89376320	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89366772_89369188_89369253_89371602_89371756_89374853_89374984_89375820
transcript_36469.nnic	chr3	+	1009	5	NNC	ENSMUSG00000027952.17	novel	1194	5	NA	NA	-10	26519	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_4	230.312152306386	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCTGTGGCTGTGTTGTC	130	False	NA	NA	False	NA	NA	NA	89366414	89402839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_89366772_89369188_89369253_89371602_89371756_89374853_89374984_89402534
transcript_36473.known	chr3	+	3077	13	FSM	ENSMUSG00000042572.13	ENSMUST00000038356.13	3077	13	0	0	0	0	multi-exon	TRUE	canonical	3	944	junction_1	76.7428968844819	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGGTTCATGTCCACTT	NA	False	NA	NA	False	AATAAA	-43	NA	89680922	89691307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89681346_89683383_89683489_89683818_89683924_89684537_89684589_89686735_89686877_89687061_89687147_89687743_89687805_89687993_89688085_89688195_89688255_89688353_89688403_89688674_89688771_89689077_89689145_89689563
transcript_3648.known	chr10	-	2129	12	FSM	ENSMUSG00000019809.17	ENSMUST00000019945.15	2129	12	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_6	16.7987602848376	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTTTAGCCATTAATTT	NA	False	NA	NA	False	AATAAA	-34	NA	13428883	13399859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428569
transcript_3649.known	chr10	-	1961	12	FSM	ENSMUSG00000019809.17	ENSMUST00000105539.2	1961	12	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_11	40.2069029063706	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAAATATAGCTTTGTTT	NA	False	NA	NA	False	AATAAA	-8	NA	13428864	13399885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_13400713_13403484_13403582_13407001_13407125_13408083_13408155_13410415_13410582_13411298_13411354_13411452_13411520_13411686_13411812_13413174_13413219_13418367_13418450_13422093_13422226_13428692
transcript_36497.known	chr3	+	1545	10	FSM	ENSMUSG00000118504.2	ENSMUST00000239076.2	1545	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	192.823529633307	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGATTTGGGCTGGCAGG	NA	False	NA	7	True	AATAAA	-16	NA	89960210	89973179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89968944_89969240_89970515_89970557_89971731_89971862_89972816
transcript_36499.known	chr3	+	2510	7	FSM	ENSMUSG00000027942.18	ENSMUST00000160640.8	2510	7	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	33.2549077413979	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAGGAAAACACAGAGCA	NA	False	NA	NA	False	NA	NA	NA	89960120	89970648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89968944
transcript_36503.known	chr3	-	1092	7	FSM	ENSMUSG00000027944.14	ENSMUST00000197767.5	1092	7	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	640.345588118027	1290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTAGTCTTGGTTTTGT	7221	False	NA	NA	False	AATAAA	-19	NA	89905973	89902759	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904873_89905044_89905311_89905834
transcript_36506.nic	chr3	-	1222	7	NIC	ENSMUSG00000027944.14	novel	1139	7	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_6	656.238629531125	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTAGTCTTGGTTTTGT	7200	False	NA	NA	False	AATAAA	-19	NA	89905994	89902759	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89904882_89905044_89905411_89905834
transcript_36513.known	chr3	-	1280	6	FSM	ENSMUSG00000027944.14	ENSMUST00000199014.5	1280	6	0	0	0	0	multi-exon	FALSE	canonical	3	1706	junction_4	119.761429517186	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAAGGTCTTAGTCTTGGTT	7201	False	NA	NA	False	AATAAA	-15	NA	89905993	89902763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89904693_89905311_89905834
transcript_36516.known	chr3	-	857	6	FSM	ENSMUSG00000027944.14	ENSMUST00000197786.5	857	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	742.362876226984	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGGTCTTAGTCTTGGTTT	7210	False	NA	NA	False	AATAAA	-16	NA	89905984	89902762	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89903018_89903120_89903212_89903317_89903425_89903553_89903606_89905108_89905311_89905834
transcript_36521.known	chr3	-	3494	26	FSM	ENSMUSG00000042520.17	ENSMUST00000199834.5	3494	26	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_21	230.048746138726	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTCTGCGTTCTTTCCGT	3507	False	NA	-4	True	AATAAA	-19	NA	89959822	89913526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89913925_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946121_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
transcript_36522.known	chr3	-	3385	27	FSM	ENSMUSG00000042520.17	ENSMUST00000198322.5	3385	27	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	317.141774803389	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTCTCACCTTAATGTGC	3567	False	NA	-9	True	AATAAA	-21	NA	89959762	89907446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89907561_89909585_89909781_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959696
transcript_36523.known	chr3	-	3975	28	FSM	ENSMUSG00000042520.17	ENSMUST00000196843.5	3975	28	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_1	196.719480946381	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTACCTTCAGCCTCTGC	3560	False	NA	99	True	AAAAAG	-18	NA	89959769	89907599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89908299_89909585_89909784_89910551_89910620_89915562_89915669_89916416_89916635_89917739_89917822_89919992_89920047_89922436_89922526_89922608_89922805_89924005_89924079_89924421_89924597_89925720_89925776_89926458_89926649_89928203_89928377_89928545_89928824_89930737_89930937_89932369_89932542_89933899_89933986_89935631_89935685_89938617_89938678_89941371_89941485_89941961_89942008_89945676_89945773_89946154_89946324_89951006_89951118_89952160_89952239_89955076_89955207_89959761
transcript_36524.known	chr3	+	1411	7	FSM	ENSMUSG00000027942.18	ENSMUST00000162114.8	1411	7	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_6	165.248718267008	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGAGTTGTTTGGGCTTTG	NA	False	NA	NA	False	ATTAAA	-43	NA	89960148	89968301	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048_89966108_89967668
transcript_36525.known	chr3	-	2271	4	FSM	ENSMUSG00000042520.17	ENSMUST00000198282.2	2271	4	0	0	0	0	multi-exon	FALSE	canonical	3	707	junction_3	238.630816674349	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAACTCAAAAAAAGAAAAAA	3520	False	NA	NA	False	NA	NA	NA	89959809	89949102	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_89951118_89952160_89952239_89955076_89955207_89959761
transcript_36526.known	chr3	+	1080	6	FSM	ENSMUSG00000027942.18	ENSMUST00000029552.13	1080	6	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	34.2496715312717	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-4	NA	89960143	89966404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89960427_89960814_89960917_89963513_89963632_89963835_89963890_89965791_89965959_89966048
transcript_36532.known	chr3	+	2190	9	FSM	ENSMUSG00000027940.19	ENSMUST00000118566.8	2190	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	1696.75041899951	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGACCGGCTTGACTT	NA	False	NA	13	True	AATAAA	-16	NA	89986960	90008203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89996354_89996431_89997103_89997167_89997316_89997387_89998319_89998399_90006834
transcript_36536.known	chr3	+	2230	8	FSM	ENSMUSG00000027940.19	ENSMUST00000029549.16	2230	8	0	0	0	0	multi-exon	FALSE	canonical	3	3249	junction_3	140.088164659085	948	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCGGCTTGACTTTGTTA	NA	False	NA	18	True	AATAAA	-21	NA	89986846	90008208	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_89987171_89993752_89993887_89994761_89994880_89994980_89995052_89995707_89995784_89997103_89997167_89997316_89997387_90006834
transcript_36546.known	chr3	+	291	1	FSM	ENSMUSG00000104649.2	ENSMUST00000198020.2	291	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	48	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATCATTCTCAAGTCAGT	NA	False	NA	-55	True	NA	NA	NA	90034073	90034364	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_90034100_90034400
transcript_36547.known	chr3	-	546	4	FSM	ENSMUSG00000090733.7	ENSMUST00000200305.2	546	4	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8789.54951443285	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120930	90119977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120687
transcript_36548.known	chr3	-	345	4	FSM	ENSMUSG00000090733.7	ENSMUST00000170122.4	345	4	0	0	0	0	multi-exon	FALSE	canonical	3	13930	junction_3	2970.01597451746	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120958	90119977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90120061_90120240_90120352_90120499_90120609_90120916
transcript_36549.known	chr3	-	329	4	FSM	ENSMUSG00000090733.7	ENSMUST00000197361.5	329	4	0	0	0	0	multi-exon	FALSE	canonical	2	296	junction_1	8530.83639249725	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAATGTTTGTCTTGTTTAA	NA	False	NA	-6	True	AATAAA	-15	NA	90120955	90119977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90120048_90120240_90120352_90120499_90120609_90120916
transcript_36552.known	chr3	-	640	3	FSM	ENSMUSG00000090733.7	ENSMUST00000199031.5	640	3	0	0	0	0	multi-exon	TRUE	canonical	3	15374	junction_1	2726.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTCTTGTTTAACTGG	NA	False	NA	-2	True	AATAAA	-19	NA	90120941	90119973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90120061_90120240_90120352_90120499
transcript_36553.known	chr3	+	1415	8	FSM	ENSMUSG00000027935.15	ENSMUST00000107373.8	1415	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	8.56666534317997	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGGCAAGTTGATTTCT	NA	False	NA	NA	False	AATACA	-17	NA	90121001	90133692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_90121130_90129543_90129605_90130833_90130895_90131096_90131175_90131800_90131891_90132008_90132075_90132154_90132209_90132815
transcript_36556.known	chr3	+	1107	8	FSM	ENSMUSG00000027935.15	ENSMUST00000065418.7	1107	8	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	3.88613443106727	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCCCATTTGCATTACT	NA	False	NA	6	True	ATTAAA	-18	NA	90128093	90133276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_90128330_90129543_90129605_90130833_90130895_90131096_90131175_90131800_90131891_90132008_90132075_90132154_90132209_90132815
transcript_36558.known	chr3	+	762	1	FSM	ENSMUSG00000027935.15	ENSMUST00000198809.2	762	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGACACGTGCATTGCTT	NA	False	NA	NA	False	AATAAA	-19	NA	90121016	90121778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_90121000_90121800
transcript_36559.known	chr3	+	878	5	FSM	ENSMUSG00000027937.16	ENSMUST00000119304.2	878	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	145.055808225662	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACTGTATTATGGTGG	NA	False	NA	NA	False	AAAAAG	-32	NA	90138918	90142851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_90139348_90139501_90139540_90139735_90139819_90141229_90141310_90142603
transcript_3656.known	chr10	+	1466	6	FSM	ENSMUSG00000019808.9	ENSMUST00000019944.9	1466	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	288.190631353623	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACCTGGTGTCATCCTTA	NA	False	NA	NA	False	NA	NA	NA	13428637	13439120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_13429106_13432595_13432701_13435857_13436009_13437447_13437555_13438380_13438454_13438558
transcript_36560.known	chr3	+	1101	5	FSM	ENSMUSG00000027937.16	ENSMUST00000029546.15	1101	5	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_4	18.2260116317312	198	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTAGTGTAATCATTTG	NA	False	NA	4	True	AATAAA	-14	NA	90138903	90143145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_90139348_90139501_90139540_90139735_90139819_90141229_90141310_90142689
transcript_36562.nic	chr3	+	1302	4	NIC	ENSMUSG00000027937.16	novel	1101	5	NA	NA	-5	0	intron_retention	FALSE	canonical	3	314	junction_3	19.2527054375915	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTAGTGTAATCATTTG	NA	False	NA	4	True	AATAAA	-14	NA	90138898	90143145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_90139348_90139501_90139819_90141229_90141310_90142689
transcript_36566.known	chr3	-	1404	10	FSM	ENSMUSG00000027938.12	ENSMUST00000107369.2	1404	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_7	1.89215404065849	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCCAAGTTTTTCACTATG	NA	False	NA	NA	False	AATAAA	-19	NA	90150450	90144876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90145229_90145356_90145454_90145618_90145704_90145789_90145859_90145951_90146059_90146190_90146287_90149238_90149361_90149517_90149753_90150028_90150144_90150324
transcript_36567.known	chr3	-	1553	10	FSM	ENSMUSG00000027938.12	ENSMUST00000029547.10	1553	10	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_9	2.74873708374511	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCCAGCTTGGAAATTGT	NA	False	NA	NA	False	NA	NA	NA	90150819	90144806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90145229_90145356_90145454_90145618_90145704_90145789_90145859_90145951_90146059_90146190_90146287_90149238_90149361_90149517_90149753_90150028_90150144_90150614
transcript_36571.known	chr3	+	2364	4	FSM	ENSMUSG00000052310.10	ENSMUST00000015467.9	2364	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	8.60232526704263	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTATGGTATCTGATTCT	NA	False	NA	-1	True	AATAAA	-16	NA	90155478	90160919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_90155567_90156252_90156471_90156632_90156764_90158992
transcript_36574.known	chr3	+	2214	10	FSM	ENSMUSG00000027936.19	ENSMUST00000136970.8	2214	10	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_1	29.0814097846327	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTGTGTGCTTGGCTAT	NA	False	NA	NA	False	AATAAA	-14	NA	90161647	90171427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_90161866_90166692_90166800_90166889_90166920_90167069_90167135_90167260_90167311_90167432_90167678_90168003_90168411_90169757_90170022_90170477_90170665_90170786
transcript_36575.known	chr3	-	2259	10	FSM	ENSMUSG00000027932.15	ENSMUST00000029541.12	2259	10	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_6	21.4101625806157	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGCCCATCTTCGAGAGT	NA	False	NA	-17	True	AATAAA	-14	NA	90297234	90292545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90292841_90293556_90293688_90293786_90293885_90294054_90294254_90294370_90294462_90294561_90294757_90294942_90295068_90295634_90295794_90295996_90296207_90296478
transcript_36576.known	chr3	-	4337	30	FSM	ENSMUSG00000027933.12	ENSMUST00000029542.12	4337	30	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_21	22.3924035870797	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGCCTGAGTTGACAT	NA	False	NA	-11	True	AATGAA	-16	NA	90340836	90298702	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90299413_90299518_90299676_90299834_90299908_90300097_90300199_90300402_90300571_90301052_90301102_90301380_90301495_90301629_90301706_90302444_90302514_90303684_90303839_90307610_90307731_90307901_90307947_90308374_90308479_90308711_90308767_90309149_90309280_90309614_90309735_90310385_90310493_90310812_90310905_90311291_90311372_90311820_90311909_90313480_90313673_90315808_90315907_90317304_90317435_90318507_90318653_90320836_90320904_90322464_90322550_90322799_90322914_90329042_90329127_90331310_90331395_90340110
transcript_36580.nnic	chr3	-	833	4	NNC	ENSMUSG00000027931.13	novel	4066	22	NA	NA	2378	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	63.2824356884805	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCTTCTTGGGAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	90362405	90357897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_90358490_90358612_90358705_90362124_90362224_90362355
transcript_36581.nnic	chr3	+	1610	3	NNC	ENSMUSG00000087411.2	novel	663	4	NA	NA	-719	707	intron_retention	FALSE	canonical	3	4	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGACAGGATGGTGTGAT	171	False	NA	NA	False	NA	NA	NA	90358170	90365109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_90358727_90362372_90362550_90364232
transcript_36582.nic	chr3	-	974	3	ISM	ENSMUSG00000027931.13	ENSMUST00000029540.13	4066	22	10759	0	2369	0	intron_retention	FALSE	canonical	3	97	junction_2	38	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTCTCTTCTTGGGAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	90362414	90357897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_90358490_90358612_90358705_90362124
transcript_36583.known	chr3	-	949	2	FSM	ENSMUSG00000027931.13	ENSMUST00000152510.2	949	2	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	0	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGTCCACCACCTGCCCCA	NA	False	NA	NA	False	NA	NA	NA	90359088	90358016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90358490_90358612
transcript_36588.known	chr3	+	2027	14	FSM	ENSMUSG00000001016.13	ENSMUST00000001042.10	2027	14	0	0	0	0	multi-exon	FALSE	canonical	3	1252	junction_8	67.3276893371464	529	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGTACAAGCATTTATTTA	NA	False	NA	18	True	AATAAA	-23	NA	90383453	90395686	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394220_90394289_90394405_90394533_90394625_90394765
transcript_36590.known	chr3	+	1702	13	FSM	ENSMUSG00000001016.13	ENSMUST00000196769.5	1702	13	0	0	0	0	multi-exon	FALSE	canonical	3	1252	junction_8	69.553137160655	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGGCTTTTGGTTTTATTTT	NA	False	NA	13	True	ATTAAA	-13	NA	90383432	90395270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_90383553_90384311_90384372_90384626_90384670_90387910_90388016_90388299_90388378_90388670_90388774_90390083_90390150_90391760_90391878_90392996_90393076_90393491_90393580_90394157_90394405_90394533_90394625_90394765
transcript_36602.known	chr3	-	1575	4	FSM	ENSMUSG00000001018.16	ENSMUST00000184877.8	1575	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	310.762860643861	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AACAAAAAAATTTATTTTAT	NA	False	NA	-29	True	AATAAA	-20	NA	90398331	90395679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90396901_90397460_90397580_90397854_90397902_90398143
transcript_36606.known	chr3	-	1505	3	FSM	ENSMUSG00000001018.16	ENSMUST00000185005.2	1505	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	341	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATTTATTTTATTAT	NA	False	NA	-26	True	AATAAA	-23	NA	90398300	90395676	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90396901_90397460_90397580_90398138
transcript_36607.known	chr3	+	3167	1	FSM	ENSMUSG00000001016.13	ENSMUST00000197644.2	3167	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAATATATATAT	NA	False	NA	NA	False	NA	NA	NA	90383446	90386613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_90383400_90386600
transcript_3661.known	chr10	-	1554	6	FSM	ENSMUSG00000019806.14	ENSMUST00000162610.8	1554	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	15.3179633110933	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGTCTGCACTGTTCA	NA	False	NA	0	True	AATAAA	-17	NA	13744724	13522797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_13523451_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
transcript_36610.nic	chr3	-	2104	6	NIC	ENSMUSG00000001017.16	novel	2012	6	NA	NA	-86	0	combination_of_known_junctions	FALSE	canonical	3	677	junction_3	303.893007487833	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	-1	True	NA	NA	NA	90416891	90406262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_90407415_90409422_90409561_90410402_90410587_90413414_90413569_90414851_90414934_90416497
transcript_36613.known	chr3	-	2012	6	FSM	ENSMUSG00000001017.16	ENSMUST00000049937.13	2012	6	0	0	0	0	multi-exon	FALSE	canonical	3	892	junction_3	230.9202459725	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTTAACCCAGGCTTTC	NA	False	NA	-10	True	NA	NA	NA	90416805	90406271	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90407415_90409422_90409561_90410402_90410590_90413414_90413569_90414851_90414934_90416497
transcript_36614.known	chr3	-	2972	6	FSM	ENSMUSG00000001017.16	ENSMUST00000107344.8	2972	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	549.872130590376	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	-1	True	NA	NA	NA	90416759	90406262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90407415_90409422_90409561_90410402_90410590_90413414_90414566_90414851_90414934_90416497
transcript_36615.nic	chr3	-	1305	6	NIC	ENSMUSG00000001017.16	novel	2012	6	NA	NA	-23	3	combination_of_known_junctions	FALSE	canonical	3	677	junction_3	303.893007487833	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTGAGTTTGTTTTGT	NA	False	NA	-25	True	TTTAAA	-1	NA	90416828	90406998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_90407415_90409422_90409561_90410402_90410587_90413414_90413569_90414851_90414934_90416497
transcript_36618.known	chr3	-	3257	5	FSM	ENSMUSG00000001017.16	ENSMUST00000001043.14	3257	5	0	0	0	0	multi-exon	TRUE	canonical	3	892	junction_3	258.017804618208	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGGCTTTCTGTTTATTT	NA	False	NA	-1	True	NA	NA	NA	90416758	90406262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90407415_90409422_90409561_90410402_90410590_90413414_90414934_90416497
transcript_36619.known	chr3	-	1842	5	FSM	ENSMUSG00000001017.16	ENSMUST00000076639.11	1842	5	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	581.611769138143	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGGCTTTCTGTTTAT	NA	False	NA	-3	True	NA	NA	NA	90416769	90406264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90407415_90410402_90410587_90413414_90413569_90414851_90414934_90416497
transcript_36620.known	chr3	-	1321	5	FSM	ENSMUSG00000001017.16	ENSMUST00000107346.8	1321	5	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	566.644233624591	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTACATCTTTCTTTAAAA	NA	False	NA	NA	False	NA	NA	NA	90416781	90406800	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90407415_90410402_90410590_90413414_90413569_90414851_90414934_90416497
transcript_36626.known	chr3	-	2411	4	FSM	ENSMUSG00000001017.16	ENSMUST00000107342.2	2411	4	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	627.621435792841	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTGGTTGAGTTTGTTT	NA	False	NA	-28	True	NA	NA	NA	90416792	90407001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90407415_90410402_90410587_90413414_90414934_90416497
transcript_36627.known	chr3	-	677	3	FSM	ENSMUSG00000044080.10	ENSMUST00000060738.9	677	3	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_1	21.5	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAATGTCTGTACCCTCTG	NA	False	NA	-3	True	AATAAA	-20	NA	90421699	90418340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90418672_90419302_90419457_90421507
transcript_36628.known	chr3	-	577	3	FSM	ENSMUSG00000044080.10	ENSMUST00000107340.2	577	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	187.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTATCAATGTCTGTACCCT	NA	False	NA	-6	True	AATAAA	-17	NA	90421585	90418343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_90418672_90419285_90419457_90421507
transcript_3663.known	chr10	-	1439	6	FSM	ENSMUSG00000019806.14	ENSMUST00000019942.6	1439	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	33.5654584357193	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCTTCAGAGAATGGCTG	NA	False	NA	NA	False	AATAAA	-17	NA	13744701	13528194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_13528756_13529329_13529494_13566267_13566384_13677591_13677694_13704986_13705143_13744361
transcript_36630.known	chr3	+	715	4	FSM	ENSMUSG00000042312.11	ENSMUST00000048138.8	715	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	161.897772958398	415	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTATTTATTTATTTA	NA	False	NA	15	True	AATAAA	-20	NA	90421741	90431888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_90421773_90422064_90422327_90423156_90423350_90431659
transcript_36633.known	chr3	+	1059	4	FSM	ENSMUSG00000042306.12	ENSMUST00000167598.6	1059	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTGTCTTGACTCTTTA	371	False	NA	15	True	AATAAA	-20	NA	90434176	90436144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_90434207_90434478_90434601_90435020_90435168_90435384
transcript_36634.known	chr3	+	1127	3	FSM	ENSMUSG00000074457.11	ENSMUST00000098911.10	1127	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	6	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTCTTGGCTGCTTCCTT	NA	False	NA	8	True	AATAAA	-19	NA	90444560	90450455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_90444725_90449300_90449480_90449671
transcript_36635.known	chr3	+	723	3	FSM	ENSMUSG00000074457.11	ENSMUST00000107331.8	723	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCTGTGTGCTCTCGCAA	NA	False	NA	NA	False	NA	NA	NA	90448455	90450169	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_90448502_90449300_90449480_90449671
transcript_36636.known	chr3	+	1123	3	FSM	ENSMUSG00000074457.11	ENSMUST00000098910.3	1123	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	10.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGCTGCTTCCTTTGT	NA	False	NA	11	True	AATAAA	-22	NA	90448467	90450458	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_90448625_90449300_90449480_90449671
transcript_36637.known	chr3	+	731	3	FSM	ENSMUSG00000001025.9	ENSMUST00000001051.9	731	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	1	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCATGTGTTCTGGCTTCC	5197	False	NA	22	True	AATAAA	-22	NA	90520188	90521721	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_90520534_90521049_90521212_90521497
transcript_36638.known	chr3	-	1392	1	FSM	ENSMUSG00000042165.9	ENSMUST00000192538.2	1392	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	28	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAACTGTTCCAGCCACTT	NA	False	NA	NA	False	NA	NA	NA	92336730	92335338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_92335300_92336700
transcript_36639.known	chr3	+	511	3	FSM	ENSMUSG00000027907.5	ENSMUST00000029515.5	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_1	9.5	445	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGAGAGTCAGTAGATT	NA	False	NA	7	True	AATAAA	-25	NA	93427794	93433594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_93427861_93431357_93431507_93433298
transcript_36640.known	chr3	+	685	3	FSM	ENSMUSG00000041959.15	ENSMUST00000045756.14	685	3	0	0	0	0	multi-exon	TRUE	canonical	3	427	junction_2	41.5	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGACGTAGAGTGTTTC	NA	False	NA	20	True	AATAAA	-24	NA	93462386	93471950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_93462519_93468250_93468403_93471549
transcript_36641.known	chr3	+	1781	6	FSM	ENSMUSG00000028145.10	ENSMUST00000049822.10	1781	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	4.47213595499958	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCTTCTTGTTTTCAC	NA	False	NA	17	True	AATAAA	-27	NA	94217395	94239847	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_94217596_94224696_94224884_94230888_94231049_94231583_94231692_94237068_94237194_94238846
transcript_36643.nnic	chr3	+	1432	5	NIC	ENSMUSG00000028145.10	novel	1781	6	NA	NA	115	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	7.81024967590665	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTGCTTCTTGTTTTCAC	NA	False	NA	17	True	AATAAA	-27	NA	94217557	94239847	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_94217596_94230888_94231049_94231583_94231692_94237068_94237194_94238846
transcript_36644.known	chr3	+	1251	6	FSM	ENSMUSG00000028148.12	ENSMUST00000029794.11	1251	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.01980390271856	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTAGTTGATTCTTTTAG	NA	False	NA	NA	False	TTTAAA	-5	NA	94249405	94254659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_94249689_94250561_94250764_94251715_94251855_94253455_94253567_94253854_94253980_94254268
transcript_36645.known	chr3	+	2136	11	FSM	ENSMUSG00000028150.15	ENSMUST00000029795.10	2136	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.32664991614216	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTTCTTCTTCCTAGT	NA	False	NA	NA	False	AATATA	-17	NA	94280100	94305147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_94280239_94282341_94282372_94294427_94294514_94294766_94294909_94296057_94296565_94296781_94296904_94298380_94298514_94298686_94298795_94298951_94299063_94300337_94300448_94304498
transcript_36646.known	chr3	+	5692	14	FSM	ENSMUSG00000041912.13	ENSMUST00000166032.8	5692	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	17.2732991609977	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTGGGAGCTTTTCTCTG	NA	False	NA	NA	False	AATAAA	-14	NA	94320579	94341975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331998_94332869_94333010_94333097_94333420_94335161_94335323_94335452_94335626_94335966_94336032_94336346_94336499_94336663_94336766_94337357_94337455_94337866_94337959_94338124
transcript_36651.known	chr3	+	1612	7	FSM	ENSMUSG00000028140.14	ENSMUST00000029786.14	1612	7	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_4	26.1002341411379	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAAAAGAACTTC	8490	False	NA	NA	False	NA	NA	NA	94350631	94356015	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942_94354045_94354566_94354651_94355092
transcript_36655.known	chr3	+	1050	6	FSM	ENSMUSG00000041912.13	ENSMUST00000196386.5	1050	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	15.7175061635108	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAGAAATATGTTGACAAA	NA	False	NA	NA	False	AATAAA	-30	NA	94320624	94333615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331898_94332869_94333010_94333097
transcript_36657.known	chr3	+	1231	6	FSM	ENSMUSG00000041912.13	ENSMUST00000200486.5	1231	6	0	0	0	0	multi-exon	FALSE	canonical	2	27	junction_5	8.74070935336486	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTATGTGTATGTATGT	NA	False	NA	NA	False	ATTAAA	-26	NA	94320623	94333695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_94320670_94330108_94330259_94331001_94331109_94331807_94331998_94332869_94333010_94333097
transcript_3666.known	chr10	+	468	1	FSM	ENSMUSG00000071532.7	ENSMUST00000096020.7	468	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	825	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACTGAGTCCAGATGGCT	7726	False	NA	NA	False	NA	NA	NA	14398821	14399289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_14398800_14399300
transcript_36661.nnic	chr3	+	1575	6	NIC	ENSMUSG00000028140.14	novel	1612	7	NA	NA	-27	13	combination_of_known_splicesites	FALSE	canonical	3	10	junction_5	87.5337649138891	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTTCTGTGTTATTTCTT	8456	False	NA	NA	False	NA	NA	NA	94350597	94356028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942_94354045_94355092
transcript_36664.known	chr3	+	716	5	FSM	ENSMUSG00000028140.14	ENSMUST00000199009.2	716	5	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_4	29.7195222034272	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGGAGTTATTCTTGGT	8483	False	NA	NA	False	TATAAA	-18	NA	94350624	94354148	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_94350802_94350965_94351123_94351893_94352019_94352207_94352259_94353942
transcript_36665.known	chr3	-	630	7	FSM	ENSMUSG00000028139.6	ENSMUST00000029785.4	630	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTCTTATTTTCACTTGA	7260	False	NA	NA	False	ATTAAA	-18	NA	94380898	94372289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_94372403_94373063_94373191_94374191_94374239_94379469_94379547_94380128_94380230_94380557_94380627_94380802
transcript_36666.known	chr3	-	6261	12	FSM	ENSMUSG00000028136.16	ENSMUST00000029783.16	6261	12	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	37.6139590757922	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTTGGTTTCCTAGACTA	NA	False	NA	-2	True	AATAAA	-21	NA	94490023	94404850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_94409373_94409476_94409537_94410162_94410292_94410765_94410916_94418348_94418439_94426354_94426519_94427494_94427574_94431492_94431598_94436218_94436284_94438503_94438697_94469075_94469308_94489551
transcript_36667.known	chr3	-	3531	12	FSM	ENSMUSG00000028136.16	ENSMUST00000107283.8	3531	12	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	30.5951975921464	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAGTACAAAATATAGTA	NA	False	NA	NA	False	NA	NA	NA	94489856	94406619	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_94408579_94409476_94409537_94410162_94410292_94410765_94410916_94418348_94418439_94426354_94426519_94427494_94427574_94431492_94431598_94436218_94436284_94438503_94438697_94469075_94469308_94489551
transcript_36670.known	chr3	-	2631	13	FSM	ENSMUSG00000005968.15	ENSMUST00000006123.11	2631	13	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_11	22.9474036294596	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCCCGTGGGTCTTTTA	6441	False	NA	-5	True	AATAAA	-16	NA	94566178	94520063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94546701_94546777_94566031
transcript_36671.known	chr3	-	2555	12	FSM	ENSMUSG00000005968.15	ENSMUST00000196733.5	2555	12	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_9	16.8728840118112	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCCCCGTGGGTCTTT	6440	False	NA	-7	True	AATAAA	-14	NA	94566179	94520065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94541764_94541855_94542715_94542803_94546231_94546334_94566031
transcript_36672.nnic	chr3	-	2519	12	Fusion	ENSMUSG00000005968.15_ENSMUSG00000081355.2	novel	2555	12	NA	NA	-30	0	multi-exon	FALSE	non_canonical	3	14	junction_10	28.4119634911332	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTGCCCCGTGGGTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	94665453	94520065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr3_-_94521499_94522030_94522132_94523076_94523161_94523928_94524035_94529357_94529453_94529994_94530124_94535503_94535618_94539903_94539970_94629191_94629282_94630124_94630212_94640266_94640369_94665341
transcript_36678.known	chr3	-	1183	7	FSM	ENSMUSG00000005779.13	ENSMUST00000005923.7	1183	7	0	0	0	0	multi-exon	FALSE	canonical	3	1538	junction_1	134.402380931292	1786	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGGTTGTCTTTCTCAATT	NA	False	NA	NA	False	NA	NA	NA	94794272	94791403	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_94791752_94791981_94792071_94792227_94792345_94792970_94793053_94793385_94793533_94793751_94793959_94794079
transcript_36685.known	chr3	+	1712	12	FSM	ENSMUSG00000068874.14	ENSMUST00000090839.12	1712	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	7.58314791042644	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGATCACTCTGTGACG	2654	False	NA	NA	False	AATAAA	-14	NA	94840366	94852069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_94840474_94844007_94844065_94844205_94844319_94844518_94844705_94845265_94845387_94846956_94847140_94847358_94847538_94849774_94849854_94849935_94850058_94851149_94851243_94851385_94851505_94851716
transcript_36687.known	chr3	+	4333	10	FSM	ENSMUSG00000005774.13	ENSMUST00000137088.8	4333	10	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_7	4.21637021355784	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGCTCCTGAGTCGTTT	NA	False	NA	NA	False	NA	NA	NA	94861418	94868872	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_94861563_94862325_94862458_94862662_94862697_94863056_94863140_94863582_94863703_94863797_94863918_94864031_94864114_94864407_94864610_94865092_94865197_94865560
transcript_3669.known	chr10	-	1974	8	FSM	ENSMUSG00000019868.17	ENSMUST00000154132.8	1974	8	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_6	66.3663302881692	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCTGGAAATCCAGTACT	NA	False	NA	NA	False	AATAAA	-22	NA	14581304	14530498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_14531590_14536809_14536897_14543675_14543853_14551677_14551787_14559807_14559884_14560624_14560753_14563357_14563453_14581093
transcript_36691.known	chr3	-	1276	10	FSM	ENSMUSG00000005625.16	ENSMUST00000071664.12	1276	10	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_3	370.873576676127	746	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTTCAAATAGTGATAGCT	NA	False	NA	-13	True	AATAAA	-22	NA	94949863	94940007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
transcript_36692.known	chr3	-	1332	10	FSM	ENSMUSG00000005625.16	ENSMUST00000107237.8	1332	10	0	0	0	0	multi-exon	FALSE	canonical	3	1001	junction_3	333.422654699207	1310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAATAGTGATAGCTTTG	NA	False	NA	-10	True	AATAAA	-25	NA	94949925	94940004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_94940296_94940792_94940858_94940943_94941076_94941228_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
transcript_36693.known	chr3	-	1756	9	FSM	ENSMUSG00000005625.16	ENSMUST00000117355.2	1756	9	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_2	388.88942435479	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTTTTGCTTCAAATAG	NA	False	NA	-21	True	AATAAA	-14	NA	94949854	94940015	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_94940858_94940943_94941076_94941219_94941338_94941876_94942093_94942252_94942322_94942548_94942636_94943120_94943236_94943915_94944057_94949818
transcript_36694.known	chr3	-	3618	15	FSM	ENSMUSG00000028126.17	ENSMUST00000107236.9	3618	15	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_14	9.68798961896341	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTAGTGTAGTAGTCA	1253	False	NA	12	True	ATTAAA	-35	NA	95014186	94965840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_94967397_94967794_94967841_94970965_94971096_94971641_94971786_94972731_94972817_94973122_94973172_94974692_94974777_94975371_94975578_94978022_94978323_94979200_94979354_94979713_94979832_94981303_94981435_94985412_94985494_94990101_94990137_95013686
transcript_36695.known	chr3	-	3663	15	FSM	ENSMUSG00000028126.17	ENSMUST00000107233.9	3663	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_14	7.6080650011172	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTAAATGCTTTTATT	1198	False	NA	-1	True	AATAAA	-44	NA	95014241	94965853	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_94967397_94967794_94967841_94970965_94971096_94971641_94971786_94972731_94972817_94973122_94973172_94974692_94974777_94975371_94975578_94978022_94978323_94979200_94979354_94979713_94979832_94981303_94981435_94985412_94985494_94990101_94990140_95013686
transcript_36696.known	chr3	-	724	2	FSM	ENSMUSG00000028126.17	ENSMUST00000107229.2	724	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCTTGTAGAGGAGTTG	1305	False	NA	NA	False	AATAAA	-33	NA	95014134	95004353	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95004630_95013686
transcript_36697.nnic	chr3	-	849	2	NNC	ENSMUSG00000028126.17	novel	724	2	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGCTTGTAGAGGAGTTG	1241	False	NA	NA	False	AATAAA	-33	NA	95014198	95004353	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_95004691_95013686
transcript_3670.known	chr10	-	753	7	FSM	ENSMUSG00000019868.17	ENSMUST00000149485.2	753	7	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	226.315168637799	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCAGTGCCCTGCAGTATG	NA	False	NA	NA	False	NA	NA	NA	14581203	14531531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_14531590_14543675_14543853_14551677_14551787_14559807_14559884_14560624_14560753_14563357_14563453_14581093
transcript_36701.known	chr3	+	1456	6	FSM	ENSMUSG00000008958.15	ENSMUST00000009102.9	1456	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	358.969413738831	632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAACAAATAA	2560	False	NA	NA	False	NA	NA	NA	95018332	95030362	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95018526_95025535_95025689_95025959_95026075_95026441_95026619_95028572_95028718_95029689
transcript_36703.known	chr3	+	956	6	FSM	ENSMUSG00000008958.15	ENSMUST00000125548.8	956	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	357.37017223042	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCACTACCTGGCTCTGG	2611	False	NA	NA	False	NA	NA	NA	95018383	95030032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95018407_95025535_95025689_95025959_95026075_95026441_95026619_95028572_95028718_95029689
transcript_36705.known	chr3	+	1242	10	FSM	ENSMUSG00000005628.13	ENSMUST00000005769.13	1242	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.05409255338946	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTCTCCTTGCCTGGAT	NA	False	NA	NA	False	AATAAA	-19	NA	95031824	95036520	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95031890_95032825_95032989_95033130_95033288_95033721_95033839_95034650_95034741_95034899_95035031_95035114_95035223_95035579_95035724_95035910_95036056_95036398
transcript_36706.known	chr3	+	2394	3	FSM	ENSMUSG00000053769.6	ENSMUST00000066386.6	2394	3	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_2	5.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGCTTTAGTGGTTTTA	8611	False	NA	17	True	ATTAAA	-13	NA	95041398	95046829	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95042308_95044935_95045298_95045706
transcript_36707.known	chr3	-	1122	2	FSM	ENSMUSG00000013707.4	ENSMUST00000013851.4	1122	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGGGCTCACGGTTTAAT	NA	False	NA	NA	False	AATAAA	-15	NA	95049671	95046831	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95047908_95049625
transcript_3671.known	chr10	+	1979	2	FSM	ENSMUSG00000039910.11	ENSMUST00000038107.9	1979	2	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATTTGGGGGGGGTTGTC	NA	False	NA	NA	False	AATAAA	-34	NA	17598965	17601422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_17599208_17599685
transcript_36710.known	chr3	+	2805	5	FSM	ENSMUSG00000046722.15	ENSMUST00000053872.12	2805	5	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_1	33.5885024971343	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACGGTTTCAGAGTAATC	1874	False	NA	21	True	AATAAA	-11	NA	95136042	95143720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95136177_95139095_95139404_95139859_95139971_95140798_95140891_95141560
transcript_36713.known	chr3	-	1923	2	FSM	ENSMUSG00000053192.10	ENSMUST00000065482.6	1923	2	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGGGGCTTAGTTTTTTC	6380	False	NA	0	True	AATAAA	-16	NA	95135988	95126445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95127775_95135394
transcript_36714.known	chr3	-	1810	10	FSM	ENSMUSG00000028115.17	ENSMUST00000107195.9	1810	10	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_9	2.53859103528797	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGCCTAGGGACCAAC	NA	False	NA	NA	False	AATAAA	-19	NA	95158504	95148581	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95149173_95150042_95150142_95150308_95150396_95151452_95151585_95152295_95152399_95152960_95153144_95155886_95156112_95157116_95157182_95157477_95157574_95158275
transcript_36716.known	chr3	-	1289	3	FSM	ENSMUSG00000068860.6	ENSMUST00000107197.2	1289	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	7.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTTGGTCTCATTTTTCT	NA	False	NA	-1	True	AATATA	-21	NA	95148909	95144417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95144541_95147260_95147423_95147905
transcript_36717.known	chr3	-	1959	2	FSM	ENSMUSG00000068860.6	ENSMUST00000090815.6	1959	2	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCCTTTTTTCCAGTAC	NA	False	NA	NA	False	AATAAA	-16	NA	95148909	95144230	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95144541_95147260
transcript_36718.known	chr3	-	4658	22	FSM	ENSMUSG00000015697.15	ENSMUST00000015841.12	4658	22	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_21	51.1160255943511	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGGTCTGAAATGGTC	1644	False	NA	-4	True	ATTAAA	-15	NA	95264511	95230835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95244577_95245656_95246344_95247217_95247377_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264337
transcript_36719.known	chr3	-	4573	22	FSM	ENSMUSG00000015697.15	ENSMUST00000107171.10	4573	22	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_11	47.7030211966969	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGGTCTGAAATGGTC	1688	False	NA	-4	True	ATTAAA	-15	NA	95264467	95230835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95231502_95231615_95231705_95231940_95232153_95233028_95233195_95233453_95233584_95233696_95233726_95234518_95235148_95235858_95236029_95244459_95244577_95245656_95246344_95247217_95247374_95247472_95247624_95248644_95248775_95248966_95249158_95252836_95252911_95253925_95254128_95254306_95254433_95255306_95255407_95257149_95257185_95261852_95262005_95263244_95263514_95264375
transcript_3672.known	chr10	+	4422	10	FSM	ENSMUSG00000039891.7	ENSMUST00000037964.7	4422	10	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_4	2.43938871112224	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTAGTAGGTTTTTTA	NA	False	NA	NA	False	ATTAAA	-17	NA	17672003	17721413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_17672170_17674835_17675282_17682512_17682605_17690976_17691148_17703539_17703735_17705983_17706104_17709025_17709101_17714655_17714749_17717173_17717270_17718445
transcript_36721.known	chr3	+	2216	11	FSM	ENSMUSG00000015714.12	ENSMUST00000015858.12	2216	11	0	0	0	0	multi-exon	FALSE	canonical	3	406	junction_10	31.9782738746168	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGGGTTAGTTTTTTTCT	4318	False	NA	45	True	AATAAA	-31	NA	95222394	95230910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228559_95228646_95228698_95228885_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
transcript_36724.known	chr3	+	2827	10	FSM	ENSMUSG00000038712.17	ENSMUST00000107187.9	2827	10	0	0	0	0	multi-exon	TRUE	canonical	3	130	junction_1	26.9118359384908	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCGTTCCTACCTTGGAG	NA	False	NA	15	True	AATAAA	-16	NA	95190254	95203477	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95190937_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
transcript_36725.nic	chr3	+	2305	10	NIC	ENSMUSG00000038712.17	novel	1812	9	NA	NA	511	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	57.7119282875444	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTTGCGTTCCTACCTTG	NA	False	NA	12	True	AATAAA	-13	NA	95194020	95203474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_95194184_95194955_95195712_95198332_95198391_95198790_95198856_95199435_95199595_95199935_95200039_95200935_95201079_95202105_95202298_95202583_95202737_95202961
transcript_36728.nic	chr3	+	2306	10	NIC	ENSMUSG00000015714.12	novel	2216	11	NA	NA	-65	0	intron_retention	FALSE	canonical	3	406	junction_9	33.6675834125276	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGGGTTAGTTTTTTTCT	4416	False	NA	45	True	AATAAA	-31	NA	95222492	95230910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_95222657_95227372_95227547_95227952_95228071_95228252_95228372_95228500_95228559_95228646_95228979_95229141_95229271_95229437_95229545_95229630_95229785_95229959
transcript_3673.known	chr10	-	425	3	FSM	ENSMUSG00000078453.4	ENSMUST00000218994.2	425	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	71	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGAGAAGTCCTGTTTTT	NA	False	NA	NA	False	GGGGCT	-1	NA	17898626	17887271	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_17887565_17894586_17894654_17898561
transcript_3674.known	chr10	-	275	3	FSM	ENSMUSG00000078453.4	ENSMUST00000220433.2	275	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	67.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTACATACGCAGGGGAAC	NA	False	NA	NA	False	NA	NA	NA	17898838	17887452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_17887565_17894586_17894654_17898742
transcript_36741.known	chr3	-	3140	8	FSM	ENSMUSG00000015711.9	ENSMUST00000015855.8	3140	8	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_5	23.7538396466589	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTTGTTTCTTTTTAAAA	4350	False	NA	NA	False	ATTAAA	-19	NA	95189387	95160984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95162739_95165337_95165497_95166550_95166646_95169521_95169681_95170902_95171088_95172728_95172932_95175541_95175635_95188895
transcript_36746.known	chr3	-	555	2	FSM	ENSMUSG00000093424.4	ENSMUST00000176569.3	555	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGTACATTGTTG	9735	False	NA	NA	False	NA	NA	NA	95222438	95218688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95218919_95222113
transcript_3675.known	chr10	-	768	3	FSM	ENSMUSG00000078453.4	ENSMUST00000220110.2	768	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	67	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTTCCTGGTGGCTGTG	NA	False	NA	-8	True	AATAAA	-18	NA	17898966	17887011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_17887565_17894586_17894650_17898814
transcript_36754.nnic	chr3	+	816	4	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-352	-90	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	52.0917993119412	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTTTTGTTTGTTTT	NA	False	NA	-82	True	AGTAAA	-16	NA	95334629	95338308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_95334711_95335864_95336134_95337597_95337750_95337994
transcript_36755.nnic	chr3	+	908	4	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-352	2	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	52.0917993119412	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGTGTCTTCCTCTAT	NA	False	NA	10	True	AGTAAA	-24	NA	95334629	95338400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_95334711_95335864_95336134_95337597_95337750_95337994
transcript_36759.nnic	chr3	+	1162	3	NNC	ENSMUSG00000097532.3	novel	412	2	NA	NA	-361	2	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_1	55	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCCAGTGTCTTCCTCTAT	NA	False	NA	10	True	AGTAAA	-24	NA	95334620	95338400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_95334711_95335864_95336134_95337597
transcript_3676.known	chr10	-	1190	6	FSM	ENSMUSG00000059554.13	ENSMUST00000080860.13	1190	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	8.9977775033616	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTTTTCTGTTTAGAA	NA	False	NA	0	True	AATAAA	-21	NA	18110744	18089423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_18089927_18092007_18092031_18095235_18095391_18100644_18100809_18106166_18106367_18110599
transcript_36760.known	chr3	+	2699	22	FSM	ENSMUSG00000015522.19	ENSMUST00000102749.11	2699	22	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	68.4937059524599	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTTTAGGATCCTCTGA	NA	False	NA	-2	True	ATTAAA	-11	NA	95341698	95402878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95374103_95374149_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
transcript_36762.known	chr3	+	4325	21	FSM	ENSMUSG00000015522.19	ENSMUST00000090804.12	4325	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	84.9941174435031	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTGTGTTGTGTGATA	NA	False	NA	NA	False	TATAAA	-1	NA	95341700	95404551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687_95367733_95377487_95377702_95381849_95382064_95383390_95383494_95387505_95387572_95388064_95388151_95391082_95391160_95392169_95392305_95394559_95394635_95395665_95395818_95396902_95397014_95397191_95397268_95397565_95397690_95397863_95397967_95398333_95398482_95401008_95401172_95401757_95401925_95402614
transcript_36764.known	chr3	+	783	4	FSM	ENSMUSG00000015522.19	ENSMUST00000107160.8	783	4	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_1	3.2659863237109	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATACTGGTTTTACTTTTAG	NA	False	NA	NA	False	ATTAAA	-21	NA	95341738	95368179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95341873_95355682_95355795_95359895_95359941_95367687
transcript_36765.known	chr3	+	1444	16	FSM	ENSMUSG00000028109.15	ENSMUST00000107154.4	1444	16	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_15	107.711260114974	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGTGTTTACCTGAGATA	NA	False	NA	NA	False	AATAAA	-15	NA	95466988	95494907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95492845_95492901_95494691
transcript_36767.nnic	chr3	+	1541	16	NNC	ENSMUSG00000028109.15	novel	1511	16	NA	NA	-39	0	at_least_one_novel_splicesite	TRUE	canonical	3	21	junction_2	105.267194425529	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATATTGTGTTTACCTGA	NA	False	NA	NA	False	AATAAA	-11	NA	95466948	95494903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_95467035_95467121_95467247_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
transcript_36769.nnic	chr3	+	1675	16	NNC	ENSMUSG00000028109.15	novel	1511	16	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_2	105.894412820822	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATATTGTGTTTACCTGA	NA	False	NA	NA	False	AATAAA	-11	NA	95466948	95494903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_95467035_95467121_95467381_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
transcript_36772.known	chr3	+	1385	15	FSM	ENSMUSG00000028109.15	ENSMUST00000029754.13	1385	15	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_6	50.4359059821958	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATATTGTGTTTACCTGA	NA	False	NA	NA	False	AATAAA	-11	NA	95466988	95494903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95467044_95468538_95468592_95469790_95469936_95473931_95473996_95474994_95475032_95477976_95477998_95478238_95478266_95482845_95482914_95483587_95483740_95485363_95485612_95487315_95487383_95487468_95487546_95488817_95488902_95492450_95492526_95494691
transcript_3678.known	chr10	-	2535	4	FSM	ENSMUSG00000019853.7	ENSMUST00000020000.7	2535	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	0.471404520791032	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGTGGTTCTTGGATCAT	NA	False	NA	NA	False	TTTAAA	-18	NA	18421824	18415245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_18417081_18420012_18420194_18420825_18420962_18421441
transcript_36784.known	chr3	+	2836	5	FSM	ENSMUSG00000046519.16	ENSMUST00000177390.8	2836	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	6.87386354243376	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTTCTCTCTGTACAT	NA	False	NA	4	True	AATAAA	-15	NA	95496244	95526553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95496446_95499027_95499217_95515216_95515349_95516982_95517098_95524354
transcript_36787.known	chr3	+	495	1	FSM	ENSMUSG00000060438.6	ENSMUST00000074353.6	495	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	66	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGTTGGAGTTTATGTTG	106	False	NA	-23	True	NA	NA	NA	95529588	95530083	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95529600_95530100
transcript_36788.nnic	chr3	+	764	5	NNC	ENSMUSG00000038619.13	novel	1130	4	NA	NA	-110	-1610	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	231.406568618957	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCATCTCCGATCTTCTC	272	False	NA	21	True	NA	NA	NA	95532193	95537803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_95532488_95534059_95534186_95535851_95536019_95536546_95536610_95537689
transcript_36789.nnic	chr3	+	646	5	NNC	ENSMUSG00000038619.13	novel	1130	4	NA	NA	0	-1610	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_4	225.514411956309	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCATCTCCGATCTTCTC	382	False	NA	21	True	NA	NA	NA	95532303	95537803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_95532488_95534059_95534186_95535851_95536019_95536546_95536610_95537697
transcript_3679.known	chr10	-	968	4	FSM	ENSMUSG00000019853.7	ENSMUST00000213153.2	968	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	12.4988888395018	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCCTTGCCTCCGCTGTT	NA	False	NA	NA	False	AGTAAA	-22	NA	18421635	18416505	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_18417081_18420130_18420194_18420825_18420962_18421441
transcript_36790.known	chr3	+	1130	4	FSM	ENSMUSG00000038619.13	ENSMUST00000058230.13	1130	4	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	204.491781959298	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACCAAAACTAGACCT	400	False	NA	10	True	AATAAA	-21	NA	95532321	95539413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95532488_95534059_95534186_95535851_95536019_95538742
transcript_36791.known	chr3	+	3845	3	FSM	ENSMUSG00000038619.13	ENSMUST00000037983.6	3845	3	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_2	58	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAACCAAAACTAGACCT	409	False	NA	10	True	AATAAA	-21	NA	95532330	95539413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95532488_95534059_95534186_95535851
transcript_36793.known	chr3	+	937	2	FSM	ENSMUSG00000038619.13	ENSMUST00000197050.2	937	2	0	0	0	0	multi-exon	FALSE	canonical	3	538	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCCTTTAATCCCAGTAC	415	False	NA	NA	False	ATTAAA	-30	NA	95532336	95534845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95532488_95534059
transcript_36794.known	chr3	+	3418	3	FSM	ENSMUSG00000038612.17	ENSMUST00000037947.15	3418	3	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_2	15.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTAAGGTGTGGTATGGG	6417	False	NA	14	True	AATAAA	-14	NA	95566098	95570487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95566799_95567071_95567320_95568017
transcript_36797.nic	chr3	+	684	2	ISM	ENSMUSG00000038612.17	ENSMUST00000178686.2	858	4	777	-192	777	192	3prime_fragment	FALSE	canonical	3	754	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCCCCTGGAAGAGTCACT	7263	False	NA	34	True	AATAAA	-16	NA	95566944	95568326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_95567320_95568017
transcript_36798.nic	chr3	+	1610	2	ISM	ENSMUSG00000038612.17	ENSMUST00000178686.2	858	4	777	-1118	777	1118	3prime_fragment	FALSE	canonical	3	754	junction_1	0	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGCCAAGCTTTGTTTT	7263	False	NA	36	True	AATAAA	-27	NA	95566944	95569252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_95567320_95568017
transcript_36799.nic	chr3	+	2845	2	ISM	ENSMUSG00000038612.17	ENSMUST00000037947.15	3418	3	846	0	777	0	3prime_fragment	FALSE	canonical	3	754	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTAAGGTGTGGTATGGG	7263	False	NA	14	True	AATAAA	-14	NA	95566944	95570487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_95567320_95568017
transcript_3680.known	chr10	+	1952	3	FSM	ENSMUSG00000019851.9	ENSMUST00000019998.9	1952	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	1	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTGTCTGCTTTGTAGT	NA	False	NA	12	True	AATAAA	-14	NA	18720767	18732821	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_18721155_18729284_18729426_18731397
transcript_36805.known	chr3	-	2400	18	FSM	ENSMUSG00000028107.15	ENSMUST00000029752.15	2400	18	0	0	0	0	multi-exon	TRUE	canonical	1	178	junction_5	104.738626737206	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662183	95647287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
transcript_3681.known	chr10	+	2112	7	FSM	ENSMUSG00000020009.14	ENSMUST00000020188.13	2112	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	3.14907393794853	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACTTGGATATTCATTTA	NA	False	NA	17	True	AGTAAA	-18	NA	19467696	19485977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_19467946_19473163_19473279_19477067_19477232_19479501_19479681_19481981_19482169_19483004_19483130_19484884
transcript_36815.known	chr3	-	2157	16	FSM	ENSMUSG00000028107.15	ENSMUST00000163530.8	2157	16	0	0	0	0	multi-exon	FALSE	canonical	1	51	junction_13	151.691997884602	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662183	95647287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95653846_95654010_95654750_95654969_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95660318_95660443_95661630_95661828_95662069
transcript_3682.known	chr10	+	4252	18	FSM	ENSMUSG00000019996.18	ENSMUST00000020173.16	4252	18	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_11	29.0770364453276	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGTTCTATTTATTTAAAT	NA	False	NA	14	True	ATTAAA	-19	NA	20024216	20157268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_20024827_20106529_20106629_20109114_20109193_20121015_20121180_20122343_20122462_20126115_20126227_20132929_20133044_20137604_20137730_20142481_20142598_20142868_20143123_20145105_20145335_20149025_20149201_20149524_20149627_20149991_20150043_20150347_20150406_20151921_20152022_20153870_20154092_20155741
transcript_36821.nic	chr3	-	2019	16	NIC	ENSMUSG00000028107.15	novel	2400	18	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	14	junction_7	161.606463017074	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGCTGTGCCTTCATCTGA	NA	False	NA	-19	True	AATAAA	-16	NA	95662183	95647287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_95647632_95648633_95648749_95649385_95649459_95649627_95649730_95649889_95649991_95653096_95653175_95653344_95653483_95655353_95655453_95655798_95655946_95657650_95657730_95658012_95658078_95658178_95658297_95658817_95658943_95660318_95660443_95661630_95661828_95662069
transcript_36828.known	chr3	-	3298	9	FSM	ENSMUSG00000028106.14	ENSMUST00000197449.2	3298	9	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_5	23.6851087183488	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGAAAGTGTCATGAATTG	10010	False	NA	-4	True	ATTAAA	-15	NA	95726090	95679566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95681685_95683826_95684110_95687726_95687903_95691525_95691653_95692365_95692419_95693631_95693710_95694595_95694697_95697411_95697542_95725858
transcript_36837.known	chr3	-	2933	16	FSM	ENSMUSG00000015748.14	ENSMUST00000015892.14	2933	16	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_5	22.8428447343048	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAGAGGCAGGTGGATTT	NA	False	NA	NA	False	NA	NA	NA	95763197	95737435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95763060
transcript_36841.known	chr3	-	2732	16	FSM	ENSMUSG00000015748.14	ENSMUST00000161476.8	2732	16	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_15	112.760197863529	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTAGTATGATATTTTT	NA	False	NA	-38	True	ATTAAA	-12	NA	95763065	95737933	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95738278_95739872_95739935_95741064_95741149_95741395_95741515_95742665_95742780_95742955_95743056_95743725_95743870_95747981_95748062_95751497_95751665_95752236_95752544_95754686_95754908_95755076_95755161_95756226_95756374_95758874_95759006_95760755_95760950_95762631
transcript_36843.known	chr3	-	488	3	FSM	ENSMUSG00000054312.7	ENSMUST00000067298.5	488	3	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_2	92.5	399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAAGCTGTCTTATTGGTC	NA	False	NA	NA	False	AATAAA	-37	NA	95778831	95769945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95770245_95777805_95777928_95778764
transcript_36844.known	chr3	-	405	2	FSM	ENSMUSG00000054312.7	ENSMUST00000072587.5	405	2	0	0	0	0	multi-exon	FALSE	canonical	3	901	junction_1	0	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGAAGGCTTGGACATA	NA	False	NA	NA	False	AATAAA	-17	NA	95777931	95769965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95770245_95777805
transcript_36845.nnic	chr3	-	1512	7	NNC	ENSMUSG00000038550.11	novel	1398	6	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_6	74.0954714465661	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTTTTT	NA	False	NA	-1	True	ATTAAA	-15	NA	95789557	95785814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788902_95789266_95789365_95789466
transcript_36846.nnic	chr3	-	1113	6	NIC	ENSMUSG00000038550.11	novel	1939	5	NA	NA	20	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	72.7268863626101	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTTTTT	NA	False	NA	-1	True	ATTAAA	-15	NA	95789366	95785814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788592_95789266
transcript_36848.nic	chr3	-	1534	6	NIC	ENSMUSG00000038550.11	novel	1398	6	NA	NA	38	0	combination_of_known_junctions	FALSE	canonical	3	53	junction_5	52.0292225580971	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTTTTT	NA	False	NA	-1	True	ATTAAA	-15	NA	95789477	95785814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788902_95789266
transcript_36849.known	chr3	-	1398	6	FSM	ENSMUSG00000038550.11	ENSMUST00000036418.10	1398	6	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_5	32.3604697122894	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAATGCTTTTTTTTTTTT	NA	False	NA	-3	True	ATTAAA	-13	NA	95789543	95785816	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492_95788902_95789466
transcript_36851.known	chr3	-	752	6	FSM	ENSMUSG00000038543.14	ENSMUST00000036360.13	752	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	8.93532316147547	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATTTTGCCTACTTCTTA	NA	False	NA	NA	False	NA	NA	NA	95799267	95791269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95791550_95792281_95792381_95795452_95795609_95796168_95796228_95797034_95797122_95799196
transcript_36853.known	chr3	-	809	6	FSM	ENSMUSG00000038543.14	ENSMUST00000090476.10	809	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	2.22710574513201	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGCCTACTTCTTAATGA	NA	False	NA	NA	False	NA	NA	NA	95799317	95791265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95791550_95792281_95792384_95795452_95795609_95796168_95796228_95797034_95797122_95799196
transcript_36854.nnic	chr3	-	1032	5	NIC	ENSMUSG00000038550.11	novel	1939	5	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_4	78.2959130478724	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTTTTT	NA	False	NA	-1	True	ATTAAA	-15	NA	95789384	95785814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95789266
transcript_36855.known	chr3	-	710	5	FSM	ENSMUSG00000038550.11	ENSMUST00000161866.8	710	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	75.7396857664461	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCGAGGAGCCTCGT	NA	False	NA	NA	False	AAGAAA	-2	NA	95789563	95786115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95789466
transcript_36856.known	chr3	-	1939	5	FSM	ENSMUSG00000038550.11	ENSMUST00000159739.8	1939	5	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_2	14.8723737177358	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTTTTT	NA	False	NA	-1	True	ATTAAA	-15	NA	95789517	95785814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95786462_95787720_95787833_95787946_95788026_95788294_95788371_95788492
transcript_36857.known	chr3	+	1601	7	FSM	ENSMUSG00000015750.16	ENSMUST00000056710.10	1601	7	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_6	85.2670641116617	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATAAAAAGGACTTTATAAT	NA	False	NA	-20	True	NA	NA	NA	95801366	95804757	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95801596_95802132_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548_95803673_95804005
transcript_36859.known	chr3	+	2863	6	FSM	ENSMUSG00000015750.16	ENSMUST00000015894.12	2863	6	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_4	15.0651916682132	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAACTCA	NA	False	NA	NA	False	AATACA	-4	NA	95801280	95805600	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95801596_95802132_95802304_95802454_95802529_95802759_95802883_95803029_95803158_95803548
transcript_3686.nnic	chr10	+	1974	7	NNC	ENSMUSG00000019996.18	novel	1008	7	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_6	110.886453435736	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGATGTATCTGATTGG	NA	False	NA	NA	False	AATAAA	-18	NA	20024720	20127638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_20024827_20106529_20106629_20109114_20109193_20121015_20121180_20122343_20122462_20126115_20126227_20126340
transcript_36865.known	chr3	+	1381	7	FSM	ENSMUSG00000015749.13	ENSMUST00000015893.13	1381	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_5	557.690301352123	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACAGGTGTAGTTTGGTGC	NA	False	NA	12	True	ATTAAA	-15	NA	95836589	95852877	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845316_95851618_95851674_95852491
transcript_36867.known	chr3	+	3274	7	FSM	ENSMUSG00000015749.13	ENSMUST00000165307.8	3274	7	0	0	0	0	multi-exon	FALSE	canonical	3	1451	junction_5	106.857641540301	1164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTTCAGTGTGTGATTG	NA	False	NA	105	True	AATAAA	-22	NA	95836557	95854702	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95836963_95841220_95841371_95842087_95842211_95844335_95844508_95845193_95845352_95851618_95851674_95852491
transcript_36876.known	chr3	+	2890	6	FSM	ENSMUSG00000015749.13	ENSMUST00000168106.8	2890	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	657.373987924682	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGGACGGGCAGCGCTG	NA	False	NA	-16	True	NA	NA	NA	95836697	95854581	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95836963_95841220_95841371_95844335_95844508_95845193_95845352_95851618_95851674_95852491
transcript_36879.known	chr3	+	878	5	FSM	ENSMUSG00000015749.13	ENSMUST00000171368.8	878	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	694.522497835743	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATTCTCATTCATCTTC	NA	False	NA	NA	False	NA	NA	NA	95836636	95852754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_95836963_95844431_95844508_95845193_95845352_95851618_95851674_95852491
transcript_3688.known	chr10	+	3831	18	FSM	ENSMUSG00000019996.18	ENSMUST00000116259.5	3831	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	71.9742360670778	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTTCCTGTGGTTTCACTT	NA	False	NA	15	True	AATAAA	-24	NA	20024729	20157336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_20024827_20106529_20106629_20109114_20109193_20121015_20121180_20122343_20122462_20126115_20126227_20132929_20133044_20137580_20137730_20142481_20142598_20142868_20143123_20145105_20145335_20149025_20149201_20149524_20149627_20149991_20150043_20150347_20150406_20151921_20152022_20153870_20154092_20155741
transcript_36883.known	chr3	-	2637	15	FSM	ENSMUSG00000015747.6	ENSMUST00000015891.6	2637	15	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_11	13.9571136130707	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGCTTCAGTGTTTGATGG	NA	False	NA	-5	True	AATAAA	-26	NA	95965778	95907143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95907464_95926920_95927053_95938317_95938440_95940090_95940199_95940976_95941136_95948649_95948818_95949620_95949735_95950105_95950241_95953663_95953775_95954309_95954448_95954558_95954628_95955619_95955700_95960350_95960412_95964291_95964427_95964993
transcript_36884.known	chr3	-	266	2	FSM	ENSMUSG00000015747.6	ENSMUST00000140518.2	266	2	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTGGCATCATAATTATC	NA	False	NA	NA	False	AATAAA	-16	NA	95965031	95964198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_95964427_95964993
transcript_36886.known	chr3	+	1915	6	FSM	ENSMUSG00000068856.4	ENSMUST00000076372.5	1915	6	0	0	0	0	multi-exon	FALSE	canonical	3	1297	junction_3	204.272758829953	325	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAGTGATGGGCACAGGG	NA	False	NA	NA	False	AATAAA	-21	NA	96079647	96084880	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_96079924_96080286_96080416_96080856_96081400_96081638_96081846_96083950_96084125_96084294
transcript_36889.known	chr3	+	2778	17	FSM	ENSMUSG00000045934.16	ENSMUST00000054356.16	2778	17	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	1.93245310421754	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCTGGTATTTTCTTGTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	96069320	96079034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_96069576_96069945_96070037_96070408_96070531_96070784_96070846_96070984_96071128_96071564_96071644_96071749_96071886_96072102_96072191_96072313_96072403_96072487_96072613_96075127_96075195_96075388_96075460_96075914_96076082_96076351_96076526_96077122_96077306_96077668_96077963_96078401
transcript_3689.known	chr10	+	1008	7	FSM	ENSMUSG00000019996.18	ENSMUST00000214823.2	1008	7	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_6	29.1018327028843	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGTATCACT	NA	False	NA	NA	False	NA	NA	NA	20024743	20133284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_20024827_20106529_20106629_20109114_20109193_20121015_20121180_20122343_20122462_20126115_20126227_20132929
transcript_36891.known	chr3	+	165	1	FSM	ENSMUSG00000118936.1	ENSMUST00001239542.1	165	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTCCTTGTATGACAAAA	NA	False	NA	NA	False	NA	NA	NA	96396044	96396209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_96396000_96396200
transcript_36892.known	chr3	+	2028	4	FSM	ENSMUSG00000038403.11	ENSMUST00000049208.11	2028	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATCCTGTCCTCTGTTGCCTC	NA	False	NA	NA	False	ATTAAA	-15	NA	96432487	96436526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_96432647_96433744_96433919_96434350_96434899_96435379
transcript_36894.known	chr3	+	2795	8	FSM	ENSMUSG00000038393.15	ENSMUST00000049093.8	2795	8	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	94.3746333956929	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATAAATGTTCTTTTCT	NA	False	NA	19	True	AATAAA	-14	NA	96465275	96469173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_96465802_96466207_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
transcript_36895.known	chr3	+	2827	8	FSM	ENSMUSG00000038393.15	ENSMUST00000074519.13	2827	8	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	78.2390371795021	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGATACTGGAGAAGTTAC	NA	False	NA	45	True	AATAAA	-40	NA	96465272	96469199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_96465802_96466204_96466281_96466385_96466534_96466648_96466752_96466904_96467162_96467253_96467411_96467523_96467676_96467794
transcript_36897.nic	chr3	-	799	2	ISM	ENSMUSG00000074398.6	ENSMUST00000098839.3	659	3	27	0	27	0	intron_retention	FALSE	canonical	2	2	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTCTTGTTTTTAAACC	NA	False	NA	NA	False	AATAAA	-16	NA	96465104	96463080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_96463377_96464601
transcript_36898.known	chr3	-	1427	8	FSM	ENSMUSG00000028104.15	ENSMUST00000091924.10	1427	8	0	0	0	0	multi-exon	TRUE	canonical	3	65	junction_6	13.8534604827436	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGTCTAACAGAGTGATGT	NA	False	NA	0	True	NA	NA	NA	96501497	96485187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_96485905_96487113_96487228_96487331_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96489403_96489572_96501399
transcript_36900.known	chr3	-	607	7	FSM	ENSMUSG00000028104.15	ENSMUST00000145001.2	607	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	26.9794160220137	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCTGGGCATAGACTGA	NA	False	NA	NA	False	NA	NA	NA	96501475	96485817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_96485905_96487113_96487228_96487331_96487406_96487765_96487823_96488150_96488220_96488959_96489090_96501399
transcript_36910.known	chr3	+	1122	5	FSM	ENSMUSG00000028102.16	ENSMUST00000048766.15	1122	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	117.48829728956	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTTTTATTCAATTCA	NA	False	NA	9	True	ATTAAA	-16	NA	96542987	96552042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_96543060_96543989_96544106_96544446_96544649_96550890_96551332_96551751
transcript_36911.known	chr3	+	1017	4	FSM	ENSMUSG00000028102.16	ENSMUST00000156015.2	1017	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	117.382565428886	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATGGTCACTGTGTGCCA	NA	False	NA	NA	False	NA	NA	NA	96542815	96551349	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_96543056_96543989_96544106_96544446_96544649_96550890
transcript_36912.known	chr3	+	2235	4	FSM	ENSMUSG00000028102.16	ENSMUST00000144962.8	2235	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	127.753234357839	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCCTCAGAAAGGGTCAAAA	NA	False	NA	3	True	AATAAA	-19	NA	96542691	96552682	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_96542817_96543989_96544106_96544446_96544649_96550890
transcript_36915.known	chr3	+	2695	15	FSM	ENSMUSG00000028101.19	ENSMUST00000107077.4	2695	15	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	45.7727304969111	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGGGGAAGGGATGTTGT	3321	False	NA	16	True	AATAAA	-26	NA	96604432	96613289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_96604512_96606735_96606970_96607074_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
transcript_36916.known	chr3	+	2858	14	FSM	ENSMUSG00000028101.19	ENSMUST00000107076.10	2858	14	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	28.3212760050852	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCGTCATGGAGGGGA	2588	False	NA	5	True	AATAAA	-15	NA	96603699	96613278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_96603848_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
transcript_36917.known	chr3	+	2931	14	FSM	ENSMUSG00000028101.19	ENSMUST00000064900.16	2931	14	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	24.6852374253431	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAAGTGTTTATTACTG	3287	False	NA	113	True	AAAAAG	-4	NA	96604398	96613386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_96604512_96606735_96607154_96607308_96607394_96607533_96607585_96607804_96607896_96608601_96608737_96608931_96609038_96609489_96609564_96609672_96609834_96610841_96610976_96611054_96611224_96611374_96611509_96611664_96611703_96612164
transcript_36920.known	chr3	-	1110	8	FSM	ENSMUSG00000028100.12	ENSMUST00000171249.6	1110	8	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	6.53405521487387	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTTTTTTTTTTAAGTG	NA	False	NA	-2	True	AATAAA	-13	NA	96615878	96613384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_96613560_96613683_96613845_96614225_96614363_96614517_96614617_96614873_96614967_96615099_96615126_96615307_96615492_96615643
transcript_36921.known	chr3	-	1039	8	FSM	ENSMUSG00000028100.12	ENSMUST00000029742.9	1039	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	22.7075461699679	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAAGGAGAGGCCCTACTC	NA	False	NA	-101	True	NA	NA	NA	96615855	96613483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_96613560_96613683_96613845_96614225_96614363_96614517_96614617_96614873_96614967_96615125_96615203_96615307_96615492_96615643
transcript_36927.known	chr3	-	2406	15	FSM	ENSMUSG00000028099.9	ENSMUST00000154679.8	2406	15	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_14	52.4860039652944	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATATGTATCTGTTCTTAG	NA	False	NA	NA	False	AATAAA	-17	NA	96634757	96618838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96633149_96633316_96634428
transcript_36928.known	chr3	-	2390	15	FSM	ENSMUSG00000028099.9	ENSMUST00000029741.9	2390	15	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_5	23.0394515240839	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGGTCAGCACGATAAGGA	NA	False	NA	NA	False	CATAAA	-34	NA	96634944	96618805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_96619377_96620796_96620947_96621410_96621461_96621574_96621677_96622435_96622587_96622949_96623011_96623744_96623797_96623982_96624064_96626549_96626643_96626776_96626882_96629855_96629942_96630829_96631016_96631112_96631369_96633149_96633316_96634664
transcript_36938.known	chr3	-	808	4	FSM	ENSMUSG00000028099.9	ENSMUST00000141377.8	808	4	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_1	11.8415464455544	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGGTGTGTGCCAGTCAT	NA	False	NA	-1	True	AATGAA	-22	NA	96634770	96630735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_96631016_96631112_96631369_96633149_96633316_96634664
transcript_36940.known	chr3	-	923	3	FSM	ENSMUSG00000028099.9	ENSMUST00000125183.2	923	3	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	7.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTTGGTGTGTGCCAGT	NA	False	NA	-4	True	AATGAA	-19	NA	96634791	96630738	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_96631369_96633149_96633316_96634664
transcript_36941.nic	chr3	-	1745	2	ISM	ENSMUSG00000028099.9	ENSMUST00000125183.2	923	3	-122	1081	31	-1081	5prime_fragment	FALSE	canonical	3	222	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAATCAGACATAA	NA	False	NA	NA	False	NA	NA	NA	96634913	96631819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_96633316_96634664
transcript_36942.known	chr3	+	2209	9	FSM	ENSMUSG00000028098.14	ENSMUST00000029740.14	2209	9	0	0	0	0	multi-exon	FALSE	canonical	3	647	junction_7	60.034885691571	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAAGCTTCAGCGTCTCAA	4795	False	NA	14	True	AATAAA	-21	NA	96634979	96698468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_96635227_96661650_96661710_96665292_96665351_96682945_96683158_96690963_96691036_96692308_96692382_96693246_96693341_96695885_96696002_96697190
transcript_36948.known	chr3	-	4598	14	FSM	ENSMUSG00000028096.14	ENSMUST00000029738.14	4598	14	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_5	18.4284960714547	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCTGAGCAATTACACGT	1863	False	NA	NA	False	AATAAA	-14	NA	96812662	96775596	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_96778911_96779792_96779859_96780775_96780866_96782943_96783040_96787389_96787483_96787936_96788026_96789834_96789945_96797224_96797306_96798118_96798240_96800181_96800284_96800813_96800921_96804648_96804753_96805807_96805868_96812497
transcript_36963.known	chr3	+	1754	10	FSM	ENSMUSG00000028093.16	ENSMUST00000090759.5	1754	10	0	0	0	0	multi-exon	FALSE	canonical	3	1030	junction_1	83.6891662236509	1504	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTTTTGCCTGTGTGT	NA	False	NA	11	True	NA	NA	NA	97066092	97083890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_97066682_97073158_97073288_97073389_97073521_97073855_97073933_97075302_97075391_97075756_97075890_97078957_97079059_97081118_97081215_97082943_97083110_97083646
transcript_3697.known	chr10	+	3164	13	FSM	ENSMUSG00000037608.17	ENSMUST00000190156.7	3164	13	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_10	383.38271421069	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCATATTTGTAACTATCA	2850	False	NA	8	True	AATAAA	-16	NA	20188274	20216008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198714_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20208141_20208304_20209137_20209319_20215454_20215668_20215797
transcript_3698.known	chr10	+	3142	13	FSM	ENSMUSG00000037608.17	ENSMUST00000185800.7	3142	13	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_3	210.967743716638	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATATTTGTAACTATCAA	2858	False	NA	9	True	AATAAA	-17	NA	20188282	20216009	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198714_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20210244_20210392_20215454_20215668_20215797
transcript_36981.nnic	chr3	-	3002	23	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_16	68.3504732250088	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTATGTTGCTTTTTT	NA	False	NA	-8	True	AATAGA	-13	NA	97517537	97468057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_97468404_97469894_97470004_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
transcript_36982.nnic	chr3	-	2038	16	NNC	ENSMUSG00000028089.6	novel	3008	23	NA	NA	-18	-1383	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	71.5978274034128	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTACTATAAAATGTTCT	NA	False	NA	NA	False	AATAAA	-18	NA	97517537	97479733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_97480026_97488318_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
transcript_36984.known	chr3	-	3008	23	FSM	ENSMUSG00000028089.6	ENSMUST00000029730.5	3008	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	88.0793336047933	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGGTTATGTTGCTTTTTT	NA	False	NA	-8	True	AATAGA	-13	NA	97517519	97468057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_97468404_97469894_97470004_97470772_97470888_97474074_97474146_97476416_97476516_97477517_97477721_97478219_97478384_97479876_97480026_97488294_97488494_97490032_97490187_97491123_97491239_97494426_97494538_97495555_97495630_97497221_97497319_97497869_97497963_97498520_97498677_97501323_97501487_97505007_97505090_97509337_97509370_97510324_97510440_97510975_97511083_97512413_97512527_97517378
transcript_36986.known	chr3	+	1355	5	FSM	ENSMUSG00000027879.10	ENSMUST00000130778.2	1355	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	133.810500335362	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATATGCCTTGAAATTATAT	NA	False	NA	-25	True	ATTAAA	-11	NA	97808531	97829167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_97808737_97814540_97814647_97819894_97820056_97821815_97821963_97828431
transcript_36987.known	chr3	+	640	2	FSM	ENSMUSG00000027879.10	ENSMUST00000130620.2	640	2	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTGTGTTGTTTCCTTGT	NA	False	NA	NA	False	AATAAA	-44	NA	97808540	97814980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_97808737_97814536
transcript_36990.known	chr3	-	1893	12	FSM	ENSMUSG00000053398.12	ENSMUST00000065793.12	1893	12	0	0	0	0	multi-exon	FALSE	canonical	3	1070	junction_1	240.376770374213	2101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGTGTCTGTGTGATCAT	NA	False	NA	-2	True	AGTAAA	-16	NA	98247306	98220485	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_98220774_98221483_98221722_98222380_98222512_98223721_98223855_98226935_98227089_98227961_98228111_98228528_98228662_98235362_98235462_98235604_98235660_98240550_98240617_98241822_98241975_98247010
transcript_37.known	ERCC-00099	+	1344	1	FSM	ERCC-00099A	DQ875387	1344	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00099_+_0_1300
transcript_37005.known	chr3	+	4410	6	FSM	ENSMUSG00000004233.15	ENSMUST00000004343.7	4410	6	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	3.66606055596467	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAGTAAAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	99048383	99127519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_99048505_99094796_99095055_99111851_99111933_99112540_99112627_99121971_99122091_99123774
transcript_3701.known	chr10	+	5307	12	FSM	ENSMUSG00000037608.17	ENSMUST00000092678.10	5307	12	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_10	195.138687701892	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGCTGGTCTCTGTTTGCCT	2790	False	NA	16	True	AATAAA	-17	NA	20188214	20218247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885_20201552_20201675_20201846_20203847_20203954_20205055_20205141_20207831_20208008_20209137_20209319_20215454_20215668_20215797
transcript_37010.nic	chr3	-	3417	27	NIC	ENSMUSG00000033285.16	novel	3432	27	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_25	119.848400294933	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGGTTCCCTGAATAT	NA	False	NA	-15	True	ATTAAA	-15	NA	100069763	100045495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067237_100068335_100068539_100069659
transcript_37011.known	chr3	-	3432	27	FSM	ENSMUSG00000033285.16	ENSMUST00000052120.14	3432	27	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_13	50.4098586206493	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGGTTCCCTGAATAT	NA	False	NA	-15	True	ATTAAA	-15	NA	100069723	100045495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_100046159_100046374_100046469_100047494_100047624_100048870_100048915_100049528_100049577_100049768_100049862_100050270_100050337_100050718_100050770_100051008_100051144_100051634_100051747_100051874_100051976_100052950_100053008_100053747_100053884_100054016_100054103_100055420_100055523_100057182_100057277_100058278_100058510_100059223_100059329_100060122_100060221_100060861_100060964_100061177_100061292_100062238_100062335_100063695_100063775_100064639_100064759_100067081_100067292_100068335_100068539_100069659
transcript_37016.known	chr3	+	3008	14	FSM	ENSMUSG00000027865.11	ENSMUST00000029459.10	3008	14	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_11	11.7054581917706	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTATAAGGTGTTCTAT	NA	False	NA	NA	False	AATAAA	-13	NA	100069696	100114297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_100069982_100077251_100077492_100078213_100078354_100085158_100085313_100085549_100085639_100089992_100090070_100093885_100094046_100095189_100095350_100098201_100098279_100098942_100099020_100101805_100101946_100103858_100103914_100109289_100109434_100113087
transcript_37021.known	chr3	-	5640	2	FSM	ENSMUSG00000044468.15	ENSMUST00000061455.9	5640	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCAGTTATGCTCCTTA	NA	False	NA	NA	False	AATAAA	-24	NA	100396640	100375372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_100380782_100396409
transcript_37022.known	chr3	-	7969	13	FSM	ENSMUSG00000008763.17	ENSMUST00000008907.14	7969	13	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_4	6.86122357082823	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAAGTCTCTCTCTCTTTT	NA	False	NA	-1	True	AATAAA	-15	NA	100592819	100469523	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_100475059_100485791_100485908_100489300_100489474_100495033_100495254_100499148_100499265_100524278_100524373_100527344_100527469_100539819_100539915_100551856_100551938_100554307_100554427_100559854_100559952_100563334_100563591_100591876
transcript_37024.known	chr3	+	4612	6	FSM	ENSMUSG00000033233.18	ENSMUST00000037409.13	4612	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	2.33238075793812	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTTTGTTTGGCTTTACT	4331	False	NA	NA	False	NA	NA	NA	100829790	100841327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_100830716_100832256_100832991_100834540_100834671_100835370_100835486_100837132_100837260_100838746
transcript_37025.known	chr3	-	4541	23	FSM	ENSMUSG00000033222.17	ENSMUST00000076941.12	4541	23	0	0	0	0	multi-exon	TRUE	canonical	3	226	junction_14	22.0712594988997	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGGTGATGCTGTGTGTT	NA	False	NA	-7	True	AATAAA	-17	NA	100876979	100846175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_100847429_100849142_100849218_100850972_100851056_100852030_100852182_100853207_100853267_100854713_100854885_100855460_100855595_100856396_100856480_100857150_100857243_100857499_100857654_100858317_100858500_100859864_100859971_100861506_100861658_100863501_100863622_100865179_100865262_100866501_100866630_100868566_100868750_100869016_100869132_100869868_100870784_100871371_100871442_100874321_100874409_100876748_100876852_100876935
transcript_37027.nic	chr3	-	1123	3	ISM	ENSMUSG00000033222.17	ENSMUST00000127357.2	4544	17	-32	19799	-32	-7389	5prime_fragment	FALSE	canonical	3	266	junction_1	3.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGACCCTAAGTTTGTGTCC	NA	False	NA	NA	False	NA	NA	NA	100877011	100873464	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_100874409_100876748_100876852_100876935
transcript_37029.known	chr3	+	1855	2	FSM	ENSMUSG00000042035.12	ENSMUST00000198995.5	1855	2	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAGAAAAAAAAGAAA	252	False	NA	NA	False	NA	NA	NA	101284398	101286856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_101284519_101285121
transcript_37030.known	chr3	-	3679	23	FSM	ENSMUSG00000033161.11	ENSMUST00000036493.8	3679	23	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_17	44.2662166204014	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTGAGTCCTTGTCGTTT	NA	False	NA	-6	True	AATAAA	-24	NA	101512000	101483534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_101483901_101484234_101484327_101486309_101486412_101486836_101486968_101487089_101487236_101488462_101488587_101489040_101489196_101489317_101489487_101490003_101490155_101491060_101491198_101492038_101492215_101493442_101493636_101494131_101494267_101496321_101496432_101497082_101497282_101497762_101498032_101498436_101498555_101498655_101498791_101499096_101499211_101499693_101499898_101501518_101501579_101502313_101502425_101511718
transcript_37031.known	chr3	-	6531	8	FSM	ENSMUSG00000027860.16	ENSMUST00000029453.13	6531	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	79.9721890434929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCATAGTGCAGTTCTTG	NA	False	NA	NA	False	AATAAA	-17	NA	102112009	102060898	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_102065814_102070614_102070850_102072670_102072804_102074153_102074288_102091266_102091875_102096724_102096864_102104107_102104293_102111827
transcript_37033.known	chr3	-	818	5	FSM	ENSMUSG00000027860.16	ENSMUST00000161021.2	818	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	100.023434754062	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATGTCCAGGAGGAAGTT	NA	False	NA	NA	False	AAAACA	-27	NA	102074246	102065495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_102065814_102070614_102070850_102072670_102072804_102073088_102073128_102074153
transcript_37034.nnic	chr3	-	2392	5	NNC	ENSMUSG00000027860.16	novel	6531	8	NA	NA	-795	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_4	103.228811385194	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATCCA	NA	False	NA	NA	False	NA	NA	NA	102075084	102064032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_102065814_102070614_102070850_102072670_102072804_102074153_102074288_102074975
transcript_37042.nnic	chr3	-	763	5	NNC	ENSMUSG00000027860.16	novel	818	5	NA	NA	-795	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_4	116.808604135141	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATCTATGTACTTGTGTG	NA	False	NA	-11	True	NA	NA	NA	102075084	102070501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_102070850_102072670_102072804_102073088_102073128_102074153_102074288_102074975
transcript_37045.nic	chr3	-	2447	4	ISM	ENSMUSG00000027860.16	ENSMUST00000161021.2	818	5	860	-1463	-130	0	3prime_fragment	FALSE	canonical	3	141	junction_3	77.2801541291309	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAATCCA	NA	False	NA	NA	False	NA	NA	NA	102073386	102064032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_102065814_102070614_102070850_102072670_102072804_102073088
transcript_37050.nic	chr3	-	1572	4	ISM	ENSMUSG00000027860.16	ENSMUST00000029453.13	6531	8	36970	4597	-750	0	3prime_fragment	FALSE	canonical	3	166	junction_1	66.1379030679248	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATGTCCAGGAGGAAGTT	NA	False	NA	NA	False	AAAACA	-27	NA	102075039	102065495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_102065814_102070614_102070850_102072670_102072804_102074153
transcript_37057.nnic	chr3	-	832	4	NNC	ENSMUSG00000027860.16	novel	818	5	NA	NA	421	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_3	127.297551691565	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATCTATGTACTTGTGTG	NA	False	NA	-11	True	NA	NA	NA	102073825	102070501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_102070850_102072670_102072804_102073088_102073128_102073513
transcript_37060.nnic	chr3	-	724	4	NNC	ENSMUSG00000027860.16	novel	617	3	NA	NA	-795	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_3	119.08633656115	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATCTATGTACTTGTGTG	NA	False	NA	-11	True	NA	NA	NA	102075084	102070501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_102070850_102072670_102072804_102074153_102074288_102074975
transcript_37064.known	chr3	-	472	3	FSM	ENSMUSG00000027860.16	ENSMUST00000162361.2	472	3	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_2	87.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACAGCATGGAGAGTATCC	NA	False	NA	NA	False	NA	NA	NA	102073256	102070678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_102070850_102072670_102072804_102073088
transcript_37065.nnic	chr3	-	938	3	NNC	ENSMUSG00000027860.16	novel	617	3	NA	NA	455	179	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	154	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCCGTCTCTCTGGCCCA	NA	False	NA	-9	True	NA	NA	NA	102073791	102070322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_102070850_102072670_102072804_102073513
transcript_37067.known	chr3	-	617	3	FSM	ENSMUSG00000027860.16	ENSMUST00000160226.8	617	3	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_2	64	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATATCTATGTACTTGTGTG	NA	False	NA	-11	True	NA	NA	NA	102074289	102070501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_102070850_102072670_102072804_102074153
transcript_37073.known	chr3	+	4484	8	FSM	ENSMUSG00000027858.14	ENSMUST00000029451.12	4484	8	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	8.2065180664829	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATACAGAGGAACTACTGAA	NA	False	NA	NA	False	ATTAAA	-31	NA	102641844	102679608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_102642382_102657073_102657177_102664608_102664707_102665472_102665548_102666625_102666725_102668212_102668285_102672500_102672585_102676192
transcript_37077.nic	chr3	-	523	3	ISM	ENSMUSG00000086745.2	ENSMUST00000146624.2	590	4	8197	0	8197	0	3prime_fragment	FALSE	canonical	2	4	junction_1	3	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATGTTGAATTAGCAAATT	NA	False	NA	NA	False	NA	NA	NA	102634536	102627546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_102627764_102633643_102633728_102634314
transcript_37078.nic	chr3	-	3294	32	NIC	ENSMUSG00000027855.14	novel	3437	33	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_31	16.9376649901153	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTTCTCATTGATTTT	NA	False	NA	-2	True	ATTAAA	-14	NA	102843444	102725814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_102726279_102726371_102726459_102727854_102727999_102748177_102748358_102752347_102752405_102758879_102758955_102759434_102759528_102760703_102760815_102761426_102761544_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842976_102843301
transcript_37079.nic	chr3	-	3273	32	NIC	ENSMUSG00000027855.14	novel	3437	33	NA	NA	-1	0	combination_of_known_junctions	TRUE	canonical	3	64	junction_8	14.4403037547212	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTTCTCATTGATTTT	NA	False	NA	-2	True	ATTAAA	-14	NA	102843417	102725814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_102726279_102726371_102726459_102727854_102727999_102748177_102748358_102752347_102752405_102758879_102758955_102759434_102759528_102760703_102760815_102761426_102761544_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842982_102843301
transcript_37088.nic	chr3	-	2353	27	NIC	ENSMUSG00000027855.14	novel	3189	33	NA	NA	-28	-32832	combination_of_known_junctions	FALSE	canonical	3	35	junction_26	17.7592379494273	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAAAAGTAAGTTTTGT	NA	False	NA	NA	False	AATAGA	-5	NA	102843444	102758888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_102758955_102759434_102759528_102760703_102760815_102761426_102761544_102772172_102772236_102772389_102772453_102783618_102783682_102786089_102786172_102800853_102800925_102803170_102803289_102806169_102806274_102807347_102807453_102816221_102816284_102820736_102820805_102822471_102822657_102823119_102823215_102827844_102827954_102829703_102829778_102830316_102830387_102832516_102832576_102836564_102836639_102838943_102839012_102841520_102841578_102841922_102841967_102842124_102842198_102842859_102842976_102843301
transcript_37093.known	chr3	+	7375	5	FSM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	0	0	0	0	multi-exon	FALSE	canonical	3	364	junction_4	22.0609949911603	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGGAAACCGTGGTGT	NA	False	NA	9	True	NA	NA	NA	102903023	102915775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_102903284_102903471_102903578_102904558_102904702_102905805_102905920_102909023
transcript_37097.nic	chr3	+	542	3	ISM	ENSMUSG00000027854.13	ENSMUST00000029447.12	7375	5	5	11036	5	72	5prime_fragment	FALSE	canonical	3	384	junction_2	20	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAAATCGTGGGGTCGTTC	NA	False	NA	NA	False	AATAAA	-17	NA	102903028	102904739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_102903284_102903471_102903578_102904558
transcript_37099.known	chr3	+	4185	20	FSM	ENSMUSG00000068823.11	ENSMUST00000199420.5	4185	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	5440.27575987562	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	22	True	AATAAA	-25	NA	102927928	102965502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_102927986_102936104_102936529_102943890_102944038_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
transcript_3710.nic	chr10	+	2283	5	ISM	ENSMUSG00000037608.17	ENSMUST00000186100.7	3231	13	-5	14106	-2	3565	intron_retention	FALSE	canonical	3	760	junction_3	119.710066410474	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGTTAAGTTGAATAATAG	2788	False	NA	NA	False	NA	NA	NA	20188212	20201906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_20188351_20193753_20193858_20197748_20197863_20198708_20199615_20200885
transcript_37100.known	chr3	+	4318	20	FSM	ENSMUSG00000068823.11	ENSMUST00000029446.13	4318	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	4594.89725408776	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCTAGCGCTTTCATTAT	NA	False	NA	22	True	AATAAA	-25	NA	102927741	102965502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102947756_102947850_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
transcript_37106.known	chr3	+	3849	19	FSM	ENSMUSG00000068823.11	ENSMUST00000198180.5	3849	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	4600.96803991519	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAACAATGACAAGGGTCAG	NA	False	NA	NA	False	NA	NA	NA	102927922	102965307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_102927986_102936104_102936529_102946007_102946207_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
transcript_37109.known	chr3	+	3457	18	FSM	ENSMUSG00000068823.11	ENSMUST00000199240.5	3457	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	5214.76529411098	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAATCCTGTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	102927928	102965120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_102927986_102936104_102936529_102947248_102947359_102948460_102948559_102950472_102950555_102950872_102951002_102951121_102951248_102951944_102952158_102954100_102954242_102954329_102954495_102956936_102957045_102957613_102957790_102958355_102958469_102960127_102960248_102961970_102962150_102962664_102962829_102963660_102963794_102964201
transcript_37112.known	chr3	+	4470	7	FSM	ENSMUSG00000027852.15	ENSMUST00000029445.13	4470	7	0	0	0	0	multi-exon	FALSE	canonical	3	741	junction_4	34.7870505919787	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCCTACTGCCATAGGG	NA	False	NA	26	True	AATAAA	-28	NA	102965600	102975230	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971431_102971474_102971549
transcript_37118.known	chr3	+	831	6	FSM	ENSMUSG00000027852.15	ENSMUST00000200069.5	831	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_5	301.169453962383	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGAAATAGACCTGTCTCT	NA	False	NA	NA	False	NA	NA	NA	102965682	102971715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_102965757_102966220_102966349_102967516_102967696_102969689_102969850_102970645_102970770_102971549
transcript_37120.known	chr3	+	2342	16	FSM	ENSMUSG00000070385.13	ENSMUST00000090715.13	2342	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.60317370385352	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGCGAGTGGGTTTTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	102981329	103007036	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_102981434_102982722_102982735_102986344_102986520_102988267_102988434_102992622_102992789_102995632_102995853_102997360_102997491_102998459_102998655_102998932_102999065_102999616_102999781_103001715_103001843_103002029_103002194_103002957_103003079_103005985_103006160_103006341_103006453_103006855
transcript_37122.nic	chr3	+	441	2	ISM	ENSMUSG00000070385.13	ENSMUST00000177250.2	751	6	4427	-14	4427	0	3prime_fragment	FALSE	canonical	3	22	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGCGAGTGGGTTTTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	103006192	103007036	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_103006453_103006855
transcript_37123.nic	chr3	+	4991	19	NIC	ENSMUSG00000007379.16	novel	4879	18	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	218	junction_1	23.362415738442	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCACAGATCTCTTGGAG	NA	False	NA	NA	False	GATAAA	-16	NA	103009947	103077054	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_103010055_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
transcript_37124.known	chr3	+	4979	19	FSM	ENSMUSG00000007379.16	ENSMUST00000172288.3	4979	19	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_1	61.6686686361723	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCACAGATCTCTTGGAG	4717	False	NA	NA	False	GATAAA	-16	NA	103034871	103077054	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_103034967_103038668_103039648_103040530_103040662_103041054_103041168_103044458_103044630_103048374_103048472_103053827_103053873_103056356_103056539_103059608_103059719_103060952_103061023_103061803_103061882_103063355_103063497_103064117_103064267_103064959_103065138_103068863_103068906_103070306_103070413_103072323_103072561_103073728_103073816_103075086
transcript_37126.nnic	chr3	-	419	2	Antisense	novelGene_ENSMUSG00000007379.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	25	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTTTGTGAAAATCTACCT	NA	False	NA	NA	False	AATAAA	-18	NA	103029403	103026112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr3_-_103026360_103029231
transcript_3713.known	chr10	+	1991	7	FSM	ENSMUSG00000019992.9	ENSMUST00000169712.3	1991	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_5	12.6150263134442	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTGAGTATTTAACAT	NA	False	NA	7	True	AATAAA	-14	NA	20223515	20237050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_20223670_20224080_20224182_20228569_20228675_20229112_20229226_20229775_20230012_20233000_20233513_20236280
transcript_37131.known	chr3	+	1467	7	FSM	ENSMUSG00000005687.15	ENSMUST00000005830.15	1467	7	0	0	0	0	multi-exon	FALSE	canonical	3	3472	junction_4	166.601987449797	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAGAATATGTT	4929	False	NA	NA	False	NA	NA	NA	103078970	103086468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
transcript_37132.known	chr3	+	2717	6	FSM	ENSMUSG00000005687.15	ENSMUST00000139489.8	2717	6	0	0	0	0	multi-exon	FALSE	canonical	3	3472	junction_4	182.433111029769	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTATGTGTGGCTATAG	5023	False	NA	48	True	AATAAA	-16	NA	103079064	103086143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_103079182_103079263_103079357_103080590_103080662_103081655_103081818_103082934_103084736_103085670
transcript_37133.known	chr3	+	1405	7	FSM	ENSMUSG00000005687.15	ENSMUST00000135017.2	1405	7	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	1366.36225268249	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTTTCATTTTAATCCC	5046	False	NA	NA	False	NA	NA	NA	103079087	103086482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_103079182_103079263_103079357_103080549_103080662_103081655_103081818_103082934_103082986_103084654_103084736_103085670
transcript_37134.known	chr3	-	2115	1	FSM	ENSMUSG00000087119.5	ENSMUST00000117271.3	2115	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAATAAAAATAAAAATA	NA	False	NA	NA	False	AATAAA	-14	NA	103553384	103551269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_103551300_103553400
transcript_37136.known	chr3	-	5465	3	FSM	ENSMUSG00000027848.13	ENSMUST00000029440.10	5465	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATCTCTTTGGAGTCACT	749	False	NA	NA	False	ATTAAA	-13	NA	103645317	103638980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_103643980_103644267_103644554_103645137
transcript_37138.known	chr3	-	4345	4	FSM	ENSMUSG00000027845.16	ENSMUST00000029435.15	4345	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	4.71404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTATACTGTTTCCTT	NA	False	NA	-1	True	AATAAA	-15	NA	103716760	103707920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_103711372_103714709_103714893_103715387_103715554_103716215
transcript_37140.known	chr3	+	2692	11	FSM	ENSMUSG00000032952.12	ENSMUST00000076599.8	2692	11	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	21.5548138474912	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGGTGCCTGTCGTCAC	NA	False	NA	15	True	ATTAAA	-19	NA	103716835	103729339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_103716971_103717183_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
transcript_37141.nnic	chr3	+	2762	11	NNC	ENSMUSG00000032952.12	novel	2799	10	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	22.1099525101254	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGCCTGTCGTCACTT	NA	False	NA	17	True	ATTAAA	-21	NA	103716896	103729341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_103717100_103717183_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
transcript_37143.known	chr3	+	2799	10	FSM	ENSMUSG00000032952.12	ENSMUST00000047285.7	2799	10	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_7	8.73053390247253	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGCCTGTCGTCACTT	NA	False	NA	17	True	ATTAAA	-21	NA	103716943	103729341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_103717374_103719400_103719626_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
transcript_37144.nnic	chr3	+	2537	10	NNC	ENSMUSG00000032952.12	novel	2799	10	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	29.2591654944583	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGCCTGTCGTCACTT	NA	False	NA	17	True	ATTAAA	-21	NA	103716896	103729341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_103717100_103717183_103717374_103720092_103720224_103720575_103720724_103722140_103722638_103725075_103725160_103726119_103726224_103727569_103727778_103727993_103728276_103728651
transcript_37146.known	chr3	+	4426	5	FSM	ENSMUSG00000032902.2	ENSMUST00000046212.2	4426	5	0	0	0	0	multi-exon	FALSE	canonical	3	470	junction_2	50.2462685181696	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAATATTACTTGTATAT	NA	False	NA	NA	False	NA	NA	NA	104545983	104565778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_104546145_104556573_104556834_104558201_104558346_104560057_104560904_104562763
transcript_37147.nnic	chr3	+	1673	10	NNC	ENSMUSG00000002228.8	novel	1721	10	NA	NA	-3	0	at_least_one_novel_splicesite	TRUE	canonical	3	23	junction_8	22.6949714341098	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTGTGTCATTATTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	104688368	104693334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_104688726_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692559_104692713_104692866_104693017
transcript_37149.known	chr3	+	1721	10	FSM	ENSMUSG00000002228.8	ENSMUST00000002298.7	1721	10	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	13.4200881305638	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTGTGTCATTATTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	104688371	104693334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_104688726_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692610_104692713_104692866_104693017
transcript_37152.nnic	chr3	+	1575	10	NNC	ENSMUSG00000002228.8	novel	1721	10	NA	NA	1266	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	26.8153263712203	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTGTGTCATTATTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	104689637	104693334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_104689846_104689916_104690038_104690442_104690731_104690969_104691083_104691358_104691444_104691949_104692069_104692271_104692336_104692501_104692610_104692713_104692866_104693017
transcript_37163.known	chr3	+	410	1	FSM	ENSMUSG00000002228.8	ENSMUST00000197264.2	410	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTGTGTGTCATTATTTGC	NA	False	NA	NA	False	AATAAA	-14	NA	104692924	104693334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_104692900_104693300
transcript_37164.nnic	chr3	+	1160	6	NNC	ENSMUSG00000002233.14	novel	1202	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	108.939249125373	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCAGCTTCCTGTCTTT	NA	False	NA	13	True	AATAAA	-20	NA	104696349	104701775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_104696400_104698799_104698904_104699204_104699369_104699880_104700002_104700215_104700347_104701185
transcript_37166.known	chr3	+	1202	5	FSM	ENSMUSG00000002233.14	ENSMUST00000002303.12	1202	5	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	22.8965062837106	340	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGCAGCTTCCTGTCTTT	NA	False	NA	13	True	AATAAA	-20	NA	104696203	104701775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_104696400_104699204_104699369_104699880_104700002_104700215_104700347_104701185
transcript_37168.known	chr3	+	959	5	FSM	ENSMUSG00000002233.14	ENSMUST00000106787.8	959	5	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	97.4586450757448	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGGCTCACAGGAGGAGT	NA	False	NA	NA	False	NA	NA	NA	104696349	104701660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_104696418_104699204_104699369_104699880_104700002_104700215_104700347_104701185
transcript_37170.known	chr3	-	3460	21	FSM	ENSMUSG00000002227.16	ENSMUST00000168015.8	3460	21	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_20	265.434944948852	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	-25	True	AAGAAA	-21	NA	104725621	104702151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251_104725473_104725573
transcript_37171.nic	chr3	-	3828	20	ISM	ENSMUSG00000002227.16	ENSMUST00000166979.8	3584	21	-9	0	-9	0	intron_retention	FALSE	canonical	3	1102	junction_11	86.7727314610285	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	-25	True	AAGAAA	-21	NA	104725888	104702151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711709_104711793_104712030_104712219_104712424_104725251
transcript_37173.known	chr3	-	3498	20	FSM	ENSMUSG00000002227.16	ENSMUST00000002297.12	3498	20	0	0	0	0	multi-exon	TRUE	canonical	2	35	junction_17	294.113899959836	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAAGCCTCTTGCGTGTGTC	NA	False	NA	-25	True	AAGAAA	-21	NA	104725558	104702151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_104702557_104702640_104702763_104703009_104703099_104703175_104703302_104704082_104704158_104704285_104704478_104704590_104704709_104706707_104706925_104707013_104707112_104707261_104707366_104707590_104707750_104708002_104708151_104708272_104708450_104708713_104708869_104709741_104709911_104710108_104710244_104711446_104711702_104711786_104712030_104712219_104712424_104725251
transcript_37175.known	chr3	+	5728	14	FSM	ENSMUSG00000045576.17	ENSMUST00000059271.13	5728	14	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_11	6.94526359402813	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTTGTCCTGCTTCTTA	80	False	NA	NA	False	AGTAAA	-12	NA	104771818	104837380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_104772625_104775339_104775423_104778161_104778328_104780837_104780893_104782142_104782259_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826666_104826818_104829502_104829596_104833745
transcript_37177.known	chr3	+	2428	14	FSM	ENSMUSG00000045576.17	ENSMUST00000106769.8	2428	14	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_11	18.8082821993382	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCACTAGTGTATTTTCTTT	80	False	NA	29	True	AATACA	-40	NA	104771818	104834176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_104772625_104775339_104775423_104778161_104778328_104780837_104780893_104782142_104782259_104790108_104790188_104796601_104796757_104798779_104798878_104799512_104799628_104801682_104801756_104803011_104803115_104826762_104826818_104829502_104829596_104833745
transcript_37178.nnic	chr3	-	1581	11	NNC	ENSMUSG00000070372.12	novel	3193	10	NA	NA	-39	-154	at_least_one_novel_splicesite	FALSE	canonical	1	25	junction_1	485.824865563713	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTGTCCTTTCTGTC	9239	False	NA	-11	True	AATACA	-18	NA	104771755	104730248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_104730858_104732249_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104771655
transcript_3718.nic	chr10	+	2985	19	NIC	ENSMUSG00000019977.17	novel	2733	18	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_5	306.115592828656	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATTGCAAAAATGTGT	NA	False	NA	12	True	AATAAA	-14	NA	21171895	21244782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21184997_21185214_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
transcript_37182.known	chr3	-	3193	10	FSM	ENSMUSG00000070372.12	ENSMUST00000094028.10	3193	10	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_2	396.900211360208	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTCCTTCCTGAGTGTGA	9173	False	NA	NA	False	AGTAAA	-22	NA	104771821	104730094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_104732441_104732722_104732786_104735842_104735915_104741413_104741493_104742040_104742121_104747097_104747305_104748143_104748208_104749976_104750029_104752233_104752298_104771655
transcript_37186.nic	chr3	-	1171	4	ISM	ENSMUSG00000070372.12	ENSMUST00000195912.2	360	6	-638	6398	-533	-648	5prime_fragment	FALSE	canonical	3	1298	junction_3	99.5199589138893	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTCTTTCTGGTAATAT	8640	False	NA	NA	False	NA	NA	NA	104772354	104747851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_104748208_104749976_104750029_104752233_104752298_104771655
transcript_37187.known	chr3	+	2455	1	FSM	ENSMUSG00000045576.17	ENSMUST00000199186.2	2455	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTCATTTATTTTTCT	NA	False	NA	NA	False	ATTAAA	-14	NA	104771320	104773775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_104771300_104773800
transcript_37188.known	chr3	-	4834	6	FSM	ENSMUSG00000062127.12	ENSMUST00000098763.7	4834	6	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	8.46167832052247	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTCTGGGGGAAAAGTC	1472	False	NA	-13	True	ATTAAA	-15	NA	104960267	104909232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_104913445_104915263_104915372_104918508_104918740_104939968_104940077_104946180_104946304_104960215
transcript_37189.known	chr3	-	2905	11	FSM	ENSMUSG00000027905.16	ENSMUST00000090680.11	2905	11	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_2	22.5302019520465	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCAGTTTATTCTGTCGAG	NA	False	NA	0	True	AATAAA	-23	NA	105594890	105585585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_105587029_105587659_105587762_105587865_105587972_105588296_105588380_105590041_105590101_105590192_105590332_105590468_105590612_105590731_105590847_105591600_105591770_105593954_105594050_105594439
transcript_3719.known	chr10	+	2733	18	FSM	ENSMUSG00000019977.17	ENSMUST00000219915.2	2733	18	0	0	0	0	multi-exon	FALSE	canonical	3	828	junction_14	97.3053197904183	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATTGCAAAAATGTGT	NA	False	NA	12	True	AATAAA	-14	NA	21171931	21244782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243686_21244187
transcript_37190.nic	chr3	-	2165	2	ISM	ENSMUSG00000027905.16	ENSMUST00000132008.2	2257	7	-20	3421	-12	-3421	5prime_fragment	FALSE	canonical	3	347	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAACCCACTCCC	NA	False	NA	NA	False	NA	NA	NA	105594780	105592225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_105594050_105594439
transcript_37191.known	chr3	+	4701	2	FSM	ENSMUSG00000048458.9	ENSMUST00000066610.8	4701	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGGTGGTCTGCTGAAA	NA	False	NA	NA	False	AATAAA	-17	NA	105611914	105628158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_105612142_105623684
transcript_37194.known	chr3	-	2407	8	FSM	ENSMUSG00000068798.11	ENSMUST00000090678.11	2407	8	0	0	0	0	multi-exon	TRUE	canonical	3	409	junction_7	23.7667234354495	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATTTCCCTTCTCTTTAT	NA	False	NA	-18	True	AATAAA	-12	NA	105708652	105634582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_105636281_105639271_105639388_105645070_105645215_105646829_105646971_105648661_105648719_105653219_105653289_105657560_105657645_105708554
transcript_3720.nnic	chr10	+	2829	18	NNC	ENSMUSG00000019977.17	novel	2793	18	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	3	88	junction_17	229.173164005618	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTTTATTTCTTAGACA	NA	False	NA	27	True	AATAAA	-29	NA	21171895	21244797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21212865_21212975_21217612_21217879_21218297_21218464_21220975_21221094_21223160_21223308_21225210_21225286_21227825_21227944_21228440_21228510_21230537_21230643_21234211_21234303_21234630_21234740_21240573_21240675_21243540_21243731_21244187
transcript_37200.known	chr3	+	3682	10	FSM	ENSMUSG00000000561.15	ENSMUST00000010278.12	3682	10	0	0	0	0	multi-exon	FALSE	canonical	3	910	junction_4	50.9162953856864	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGAAATTGCTTTTGTTGTT	NA	False	NA	12	True	AATAAA	-31	NA	105866684	105877076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080_105873190_105873672_105873742_105874478
transcript_37203.known	chr3	+	1095	8	FSM	ENSMUSG00000000561.15	ENSMUST00000127464.8	1095	8	0	0	0	0	multi-exon	FALSE	canonical	3	910	junction_4	52.8737425671876	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCCTGTGAGTCTGAGTA	NA	False	NA	NA	False	AATATA	-16	NA	105866823	105873408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_105867015_105867268_105867455_105868932_105869075_105869330_105869381_105871757_105871829_105871938_105871994_105872396_105872469_105873080
transcript_37207.known	chr3	-	407	2	FSM	ENSMUSG00000000563.18	ENSMUST00000123959.2	407	2	0	0	0	0	multi-exon	FALSE	canonical	3	4727	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCAGATTTCCATCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	105866562	105865906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_105866215_105866463
transcript_37208.known	chr3	+	429	1	FSM	ENSMUSG00000092072.4	ENSMUST00000170669.4	429	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	375	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATTATTTATTCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	105941979	105942408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_105942000_105942400
transcript_37209.known	chr3	+	4050	12	FSM	ENSMUSG00000027901.13	ENSMUST00000029508.11	4050	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.52662323852242	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCACATTATCTGCATGCT	NA	False	NA	NA	False	AATAAA	-16	NA	106389746	106410346	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_106390030_106394188_106394365_106395166_106395280_106395887_106395958_106397650_106397729_106398541_106398683_106399744_106399894_106402146_106402325_106406133_106406176_106406536_106406622_106407070_106407311_106407851
transcript_37213.known	chr3	+	3271	9	FSM	ENSMUSG00000027900.16	ENSMUST00000067630.13	3271	9	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	15.9251177389682	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATTGGTAAGTTTTAATT	NA	False	NA	NA	False	ATTAAA	-20	NA	106455113	106483206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_106455237_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
transcript_37221.known	chr3	-	2814	9	FSM	ENSMUSG00000040774.16	ENSMUST00000068301.11	2814	9	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_8	25.7924407530579	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGTTTTCATCACAGAGG	NA	False	NA	NA	False	AATAAA	-15	NA	106455118	106409575	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_106411061_106411841_106411968_106412465_106412625_106413036_106413169_106420118_106420204_106438452_106438595_106440670_106440819_106446505_106446920_106454995
transcript_37228.known	chr3	+	2035	8	FSM	ENSMUSG00000027900.16	ENSMUST00000121034.8	2035	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	45.9937884004848	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCTTGTCATGAAAATGA	NA	False	NA	NA	False	AATAAA	-14	NA	106455179	106482161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_106455237_106462479_106462625_106469064_106469133_106473360_106473501_106478008_106478187_106478926_106479010_106480288_106480382_106480890
transcript_37230.known	chr3	+	1891	7	FSM	ENSMUSG00000027900.16	ENSMUST00000029507.13	1891	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	45.7298832517887	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTCTTGTCATGAAAATGA	NA	False	NA	NA	False	AATAAA	-14	NA	106455187	106482161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_106455237_106459471_106459597_106462479_106462625_106469064_106469133_106473360_106473501_106480288_106480382_106480890
transcript_37235.nic	chr3	+	3129	4	NIC	ENSMUSG00000056260.16	novel	929	3	NA	NA	-47	0	intron_retention	FALSE	canonical	1	6	junction_1	13.9124245031395	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTATGGCTTTGTTTTGT	NA	False	NA	31	True	AATAAA	-43	NA	106592255	106643893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_106592450_106638978_106640459_106641673_106641956_106642720
transcript_37236.known	chr3	+	3103	4	FSM	ENSMUSG00000056260.16	ENSMUST00000098750.5	3103	4	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	11.8415464455544	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGATGTATGGCTTTGTTT	NA	False	NA	28	True	AATAAA	-40	NA	106629251	106643890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_106629423_106638978_106640459_106641673_106641956_106642720
transcript_37237.known	chr3	+	929	3	FSM	ENSMUSG00000056260.16	ENSMUST00000098751.10	929	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	16.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCCCCACTGGATGCCTGA	NA	False	NA	NA	False	NA	NA	NA	106592302	106643220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_106592450_106641673_106641956_106642720
transcript_37239.known	chr3	+	1669	3	FSM	ENSMUSG00000056260.16	ENSMUST00000106736.3	1669	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	9.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTATGGCTTTGTTTTGT	NA	False	NA	31	True	AATAAA	-43	NA	106629208	106643893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_106629423_106641673_106641956_106642720
transcript_37242.known	chr3	+	743	4	FSM	ENSMUSG00000087260.6	ENSMUST00000199317.2	743	4	0	0	0	0	multi-exon	FALSE	canonical	3	1062	junction_2	64.8194072447099	1041	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGTTCATTTCTGGTCT	3151	False	NA	12	True	AATAAA	-16	NA	107186314	107191398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_107186430_107187185_107187248_107189224_107189343_107190950
transcript_37244.known	chr3	-	4343	2	FSM	ENSMUSG00000048109.11	ENSMUST00000061772.11	4343	2	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGAGGAGCTCCTCCGT	NA	False	NA	NA	False	AATAAA	-14	NA	107240989	107232736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_107233621_107237530
transcript_37245.known	chr3	-	3215	21	FSM	ENSMUSG00000014601.14	ENSMUST00000064759.7	3215	21	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_2	23.6893963620857	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGCCTTGTGTGTAGA	NA	False	NA	-1	True	ATTAAA	-17	NA	107539010	107519847	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_107520783_107521910_107522116_107522630_107522736_107523076_107523144_107523823_107523925_107524127_107524255_107525373_107525472_107525631_107525707_107526226_107526299_107527355_107527420_107527524_107527591_107528642_107528861_107529187_107529371_107531702_107531831_107531940_107532048_107532996_107533066_107534051_107534173_107534260_107534396_107534703_107534779_107535471_107535542_107538816
transcript_37246.known	chr3	-	3863	17	FSM	ENSMUSG00000027893.15	ENSMUST00000029490.15	3863	17	0	0	0	0	multi-exon	FALSE	canonical	3	702	junction_5	41.8762593094226	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTAGTCGTGTGTCTTT	NA	False	NA	-4	True	ATTAAA	-23	NA	107603876	107570435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_107572430_107572831_107572953_107574457_107574537_107574955_107575025_107575382_107575482_107575565_107575661_107575982_107576054_107576408_107576498_107577207_107577272_107577519_107577637_107578453_107578561_107579357_107579453_107580751_107580855_107581323_107581425_107582326_107582471_107585035_107585148_107603473
transcript_37247.known	chr3	+	945	8	FSM	ENSMUSG00000004032.11	ENSMUST00000004134.11	945	8	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	3.52252228741084	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTCTAGATGGATTTC	NA	False	NA	11	True	AATAAA	-16	NA	107803136	107806002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_107803315_107803613_107803690_107803941_107804007_107804603_107804686_107804777_107804879_107805282_107805379_107805481_107805593_107805766
transcript_37248.known	chr3	-	1377	8	FSM	ENSMUSG00000004035.13	ENSMUST00000004137.11	1377	8	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_6	2.49897938350513	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTTTTTCTTTGGTCGG	NA	False	NA	-7	True	NA	NA	NA	107839133	107833649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_107834297_107836185_107836297_107836378_107836475_107837589_107837691_107837788_107837871_107838143_107838209_107838630_107838707_107838934
transcript_37250.known	chr3	-	1153	8	FSM	ENSMUSG00000068762.12	ENSMUST00000106685.9	1153	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	8.51649060616507	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTGTCCTGTCGTATT	1790	False	NA	-1	True	AGTAAA	-16	NA	107851065	107846162	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_107846633_107848308_107848420_107848504_107848601_107849448_107849550_107849648_107849731_107850017_107850083_107850560_107850637_107850913
transcript_37254.nnic	chr3	-	1245	8	NNC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	77	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	90.7802909473736	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876522	107871011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_107871613_107873402_107873514_107873594_107873691_107874879_107874992_107875081_107875164_107875451_107875517_107876078_107876155_107876420
transcript_37256.known	chr3	-	1311	8	FSM	ENSMUSG00000004038.10	ENSMUST00000004136.10	1311	8	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_5	50.6947648547014	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876599	107871011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875081_107875164_107875451_107875517_107876078_107876155_107876420
transcript_37259.nnic	chr3	-	1163	7	NNC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	77	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	115.209591614587	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876522	107871011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_107871613_107873402_107873514_107873594_107873691_107874879_107874992_107875451_107875517_107876078_107876155_107876420
transcript_37261.nnic	chr3	-	1152	7	NIC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	77	0	combination_of_known_splicesites	FALSE	canonical	3	37	junction_4	86.6033422501054	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876522	107871011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_107871613_107873402_107873514_107873594_107873691_107874890_107874992_107875451_107875517_107876078_107876155_107876420
transcript_37265.nnic	chr3	-	1051	6	NIC	ENSMUSG00000004038.10	novel	1311	8	NA	NA	77	0	combination_of_known_splicesites	FALSE	canonical	3	50	junction_3	88.3388929068052	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTCTTTTTCTTTTGC	NA	False	NA	0	True	AATAAA	-20	NA	107876522	107871011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_107871613_107873402_107873514_107873594_107873691_107875451_107875517_107876078_107876155_107876420
transcript_37266.known	chr3	-	1064	8	FSM	ENSMUSG00000040562.13	ENSMUST00000012348.9	1064	8	0	0	0	0	multi-exon	FALSE	canonical	3	626	junction_6	40.3692143766479	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTCAGTGTATTATTTT	2042	False	NA	-4	True	AATAAA	-13	NA	107893769	107889017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_107889455_107891251_107891363_107891444_107891541_107892364_107892466_107892562_107892645_107892933_107892999_107893349_107893426_107893673
transcript_37268.nic	chr3	-	1439	7	NIC	ENSMUSG00000040562.13	novel	1064	8	NA	NA	-24	0	intron_retention	FALSE	canonical	3	637	junction_1	38.7298334620742	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTTCAGTGTATTATTTT	2018	False	NA	-4	True	AATAAA	-13	NA	107893793	107889017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_107889455_107891251_107891363_107891444_107891541_107892364_107892466_107892562_107892645_107892933_107893426_107893673
transcript_37272.known	chr3	-	1289	8	FSM	ENSMUSG00000058135.13	ENSMUST00000004140.11	1289	8	0	0	0	0	multi-exon	FALSE	canonical	3	592	junction_3	56.1666616201374	474	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGAGTTGTGTCTTTTTCT	6583	False	NA	-4	True	AATAAA	-18	NA	107925289	107919570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_107920095_107922068_107922180_107922260_107922357_107923643_107923745_107923834_107923917_107924199_107924265_107924666_107924743_107925055
transcript_37280.known	chr3	-	1707	8	FSM	ENSMUSG00000027890.18	ENSMUST00000029489.15	1707	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_7	25.3175747621437	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGATGTCTTTTCCTAC	NA	False	NA	-4	True	AATAAA	-20	NA	107952210	107947723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950835_107950918_107951210_107951276_107951668_107951745_107951952
transcript_37281.known	chr3	-	777	8	FSM	ENSMUSG00000027890.18	ENSMUST00000106670.2	777	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_7	31.2429583903252	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTCAAAGGTCCTCTTT	NA	False	NA	NA	False	NA	NA	NA	107952182	107948452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950835_107950918_107951210_107951276_107951668_107951745_107952125
transcript_37282.known	chr3	-	1462	8	FSM	ENSMUSG00000027890.18	ENSMUST00000178808.8	1462	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_7	32.937169624258	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTCAGATGTCTTTTCCT	NA	False	NA	-6	True	AATAAA	-18	NA	107952175	107947725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950835_107950918_107951210_107951276_107951668_107951745_107952160
transcript_37283.nnic	chr3	-	1675	8	NNC	ENSMUSG00000027890.18	novel	1707	8	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	40.2329948866726	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGATGTCTTTTCCTAC	NA	False	NA	-4	True	AATAAA	-20	NA	107952193	107947723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950850_107950918_107951210_107951276_107951668_107951745_107951952
transcript_37284.nnic	chr3	-	1502	8	NNC	ENSMUSG00000027890.18	novel	1707	8	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	43.5819659389298	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGATGTCTTTTCCTAC	NA	False	NA	-4	True	AATAAA	-20	NA	107952193	107947723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950850_107950918_107951210_107951276_107951668_107951745_107952125
transcript_37285.nnic	chr3	-	1467	8	NNC	ENSMUSG00000027890.18	novel	1707	8	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	44.6533130612605	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGATGTCTTTTCCTAC	NA	False	NA	-4	True	AATAAA	-20	NA	107952193	107947723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_107948642_107949451_107949563_107949642_107949739_107950639_107950741_107950850_107950918_107951210_107951276_107951668_107951745_107952160
transcript_37287.known	chr3	-	3586	19	FSM	ENSMUSG00000027889.18	ENSMUST00000102637.8	3586	19	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_18	33.5369705707258	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGGCATGTGAAGGTGT	NA	False	NA	-8	True	AATAAA	-15	NA	107993967	107981379	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533_107993669_107993754
transcript_37289.known	chr3	-	3650	18	FSM	ENSMUSG00000027889.18	ENSMUST00000102638.8	3650	18	0	0	0	0	multi-exon	TRUE	canonical	3	198	junction_12	21.7907634157735	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGCATGTGAAGGTGTCT	NA	False	NA	-6	True	AATAAA	-17	NA	107993943	107981377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_107982438_107982564_107982676_107982846_107983021_107983286_107983408_107983673_107983838_107983928_107984056_107984334_107984499_107984647_107984780_107984867_107985063_107985995_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533
transcript_3729.known	chr10	+	2625	5	FSM	ENSMUSG00000019977.17	ENSMUST00000092674.14	2625	5	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_4	452.231688407613	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGCATGTTATTTAAAT	NA	False	NA	NA	False	AATAAA	-24	NA	21171936	21187108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21184997
transcript_37292.nic	chr3	-	1665	9	ISM	ENSMUSG00000027889.18	ENSMUST00000102637.8	3586	19	-27	4404	-27	0	intron_retention	FALSE	canonical	3	198	junction_3	24.2586968941038	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAATTTAAAAATAAAAAA	NA	False	NA	NA	False	AATAAA	-9	NA	107993994	107985783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_107986126_107986302_107986393_107986500_107986643_107986902_107987090_107987378_107987491_107987582_107987652_107987959_107988091_107988316_107988448_107993533
transcript_37293.known	chr3	-	3262	9	FSM	ENSMUSG00000000001.5	ENSMUST00000000001.5	3262	9	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_4	42.0652395095998	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACTTTTATTTGTCTTG	NA	False	NA	-10	True	ATTAAA	-32	NA	108053462	108014595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_108016633_108016718_108016929_108019250_108019405_108019788_108019919_108023078_108023208_108025616_108025775_108030857_108031000_108031110_108031154_108053203
transcript_37298.known	chr3	-	4058	3	FSM	ENSMUSG00000048796.8	ENSMUST00000065664.7	4058	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTATGCTCTGTCCTTTTC	NA	False	NA	0	True	ATTAAA	-16	NA	108108150	108103086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_108107032_108107440_108107479_108108075
transcript_373.known	chr1	-	741	3	FSM	ENSMUSG00000025930.7	ENSMUST00000190719.2	741	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	0.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAACTCCAGGTGCTGGTTT	NA	False	NA	NA	False	NA	NA	NA	14825577	14823969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_14824550_14824729_14824767_14825453
transcript_3730.known	chr10	+	948	6	FSM	ENSMUSG00000019977.17	ENSMUST00000218785.2	948	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	524.818216147268	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATCTCATGGACTTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	21171928	21213075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_21172076_21175076_21175143_21180428_21180543_21183483_21183679_21184997_21185214_21212865
transcript_37300.known	chr3	-	2387	11	FSM	ENSMUSG00000048997.18	ENSMUST00000117784.8	2387	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_7	7.33212111192934	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAAGACTGTCTCCCTGT	3406	False	NA	NA	False	AAGAAA	-22	NA	108117778	108109543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_108109690_108110563_108111360_108111816_108111939_108112031_108112231_108112947_108113202_108113541_108113625_108114138_108114426_108114709_108114921_108115278_108115384_108115755_108115822_108117660
transcript_37303.known	chr3	+	1239	9	FSM	ENSMUSG00000068749.10	ENSMUST00000090569.10	1239	9	0	0	0	0	multi-exon	FALSE	canonical	3	2544	junction_4	248.775972262194	3093	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTAATAGTCTGTGATC	NA	False	NA	11	True	AATAAA	-15	NA	108164241	108187290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_108164622_108169001_108169069_108172381_108172509_108173748_108173817_108175108_108175217_108175348_108175408_108176143_108176247_108179606_108179694_108187050
transcript_3731.known	chr10	+	1062	3	FSM	ENSMUSG00000050844.6	ENSMUST00000057341.6	1062	3	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_2	4.5	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTGGACTCTGTCTTAT	NA	False	NA	NA	False	NA	NA	NA	21469043	21498275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_21469134_21469230_21469472_21497544
transcript_37311.known	chr3	+	1687	8	FSM	ENSMUSG00000068744.13	ENSMUST00000102629.8	1687	8	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_1	112.452983372553	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTGAGCTCTCAGACATAGG	7052	False	NA	68	True	AATAAA	-16	NA	108291174	108295547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_108291212_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
transcript_37318.known	chr3	+	1686	8	FSM	ENSMUSG00000068744.13	ENSMUST00000090561.10	1686	8	0	0	0	0	multi-exon	FALSE	canonical	3	329	junction_1	57.4402973103556	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATCTGAAAGTAGATTTT	7032	False	NA	16	True	AATAAA	-24	NA	108291154	108295495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_108291243_108291551_108291602_108291689_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
transcript_3732.known	chr10	+	2602	12	FSM	ENSMUSG00000019970.16	ENSMUST00000164659.8	2602	12	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	208.20654874943	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTGTGTCATGTGTTA	NA	False	NA	13	True	AATAAA	-19	NA	21854570	21875797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_21854882_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
transcript_37328.nic	chr3	+	1767	7	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	-24	0	intron_retention	FALSE	canonical	3	155	junction_1	118.602510747267	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATCTGAAAGTAGATTTT	7008	False	NA	16	True	AATAAA	-24	NA	108291130	108295495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_108291212_108291551_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
transcript_37334.nic	chr3	+	1809	7	NIC	ENSMUSG00000068744.13	novel	1686	8	NA	NA	-35	0	intron_retention	FALSE	canonical	3	329	junction_1	60.1405760605009	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATCTGAAAGTAGATTTT	6997	False	NA	16	True	AATAAA	-24	NA	108291119	108295495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_108291243_108291551_108291748_108292285_108292725_108293608_108293724_108293815_108294053_108294593_108294712_108294914
transcript_3734.known	chr10	+	2476	12	FSM	ENSMUSG00000019970.16	ENSMUST00000100036.10	2476	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	266.915376443206	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATTGTGTCATGTGTTA	NA	False	NA	13	True	AATAAA	-19	NA	21868121	21875797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_21868307_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
transcript_37343.known	chr3	-	1866	12	FSM	ENSMUSG00000068739.14	ENSMUST00000102625.11	1866	12	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	974.241336537401	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGGCTTCCCCAGTCTCC	NA	False	NA	-39	True	AATAAA	-18	NA	108352485	108333927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_108334298_108334575_108334706_108335176_108335249_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
transcript_37353.known	chr3	-	3570	11	FSM	ENSMUSG00000068739.14	ENSMUST00000090553.12	3570	11	0	0	0	0	multi-exon	FALSE	canonical	3	2549	junction_7	105.882198692698	2108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGAAGGTGTGGTTTATTC	NA	False	NA	NA	False	NA	NA	NA	108352514	108332180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_108334298_108334575_108334706_108335489_108335648_108335921_108336052_108336556_108336779_108338780_108338937_108340333_108340478_108341364_108341524_108343201_108343283_108344824_108344896_108352312
transcript_3736.known	chr10	+	2456	12	FSM	ENSMUSG00000019970.16	ENSMUST00000020145.12	2456	12	0	0	0	0	multi-exon	FALSE	canonical	3	717	junction_1	88.4218850289119	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCATGTGTTAACTTT	NA	False	NA	18	True	AATAAA	-24	NA	21870564	21875802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_21870725_21870864_21870941_21871372_21871449_21871692_21871798_21871924_21872009_21872121_21872254_21872457_21872571_21872877_21873002_21873240_21873337_21873796_21873953_21874058_21874149_21874558
transcript_37376.known	chr3	-	1801	3	FSM	ENSMUSG00000068739.14	ENSMUST00000197647.2	1801	3	0	0	0	0	multi-exon	FALSE	canonical	3	2675	junction_1	18	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACACTCGGCTTCCTTGTCCG	NA	False	NA	NA	False	NA	NA	NA	108352472	108341712	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_108343283_108344824_108344896_108352312
transcript_37378.known	chr3	+	661	5	FSM	ENSMUSG00000027886.8	ENSMUST00000029485.6	661	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.22474487139159	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCCCATGTGTCTGCTGT	571	False	NA	NA	False	ATTAAA	-18	NA	108444856	108452039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_108445016_108449803_108449918_108450754_108450871_108451351_108451477_108451892
transcript_37379.known	chr3	-	414	1	FSM	ENSMUSG00000088185.3	ENSMUST00000157560.3	414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGGCCCCAGGGCCCGGC	NA	False	NA	NA	False	NA	NA	NA	108462067	108461653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_108461700_108462100
transcript_37380.known	chr3	-	2752	3	FSM	ENSMUSG00000068732.6	ENSMUST00000106622.3	2752	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	80.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGCCTGCTTTGTCAT	5570	False	NA	-14	True	AATAAA	-15	NA	108469486	108463740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_108466277_108467502_108467635_108469402
transcript_37381.known	chr3	-	2864	3	FSM	ENSMUSG00000068732.6	ENSMUST00000090546.6	2864	3	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	15	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGCCTGCTTTGTCAT	5274	False	NA	-14	True	AATAAA	-15	NA	108469782	108463740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_108466277_108467502_108467635_108469586
transcript_37386.known	chr3	+	2443	4	FSM	ENSMUSG00000048100.14	ENSMUST00000143054.2	2443	4	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	10.4986771653491	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108479014	108490538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_108479065_108480195_108480275_108485431_108485530_108488322
transcript_37387.known	chr3	+	1655	4	FSM	ENSMUSG00000048100.14	ENSMUST00000056292.8	1655	4	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_1	76.856287243718	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTTGAGTTTGTGTTTGC	NA	False	NA	14	True	AATAAA	-23	NA	108479014	108489385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_108479430_108480195_108480275_108485431_108485530_108488322
transcript_37391.known	chr3	+	4222	15	FSM	ENSMUSG00000040389.16	ENSMUST00000051145.15	4222	15	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	8.19064922297845	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCCTTTTCTCACGGTC	NA	False	NA	3	True	AATAAA	-18	NA	108498594	108553035	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_108498914_108517192_108517360_108518671_108518756_108521648_108521734_108525805_108526609_108530638_108530766_108531872_108532052_108534518_108534777_108537007_108537084_108540376_108540535_108544306_108544477_108545208_108545380_108545941_108546074_108550377_108550597_108551761
transcript_37392.known	chr3	-	3498	15	FSM	ENSMUSG00000027883.16	ENSMUST00000029482.16	3498	15	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_14	18.8820182248852	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGTTAATCAAGTCTTC	NA	False	NA	NA	False	AATAAA	-19	NA	108629625	108585953	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_108587120_108589321_108589540_108589987_108590142_108594135_108594316_108597081_108597153_108604264_108604395_108604843_108604953_108606233_108606390_108607979_108608096_108608202_108608327_108609060_108609204_108609714_108609851_108610180_108610403_108618592_108618897_108629356
transcript_37398.nic	chr3	+	2125	12	NIC	ENSMUSG00000027884.17	novel	2224	13	NA	NA	-11	0	combination_of_known_junctions	TRUE	canonical	3	126	junction_1	23.1716555264122	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6585	False	NA	6	True	AATAAA	-18	NA	108561217	108586156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_108561368_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
transcript_374.known	chr1	-	1741	2	FSM	ENSMUSG00000025930.7	ENSMUST00000027062.7	1741	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCATTGTAAAAGTTCTT	NA	False	NA	4	True	AATAAA	-21	NA	14826214	14823569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_14824550_14825453
transcript_37400.known	chr3	+	2043	12	FSM	ENSMUSG00000027884.17	ENSMUST00000106609.8	2043	12	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	36.8117839559091	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGTCTGGTGTGCAGTC	6596	False	NA	6	True	AATAAA	-18	NA	108561228	108586156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_108561297_108568670_108568812_108569247_108569350_108570839_108570948_108575278_108575501_108576014_108576156_108578217_108578312_108580135_108580234_108580596_108580744_108581952_108582280_108584000_108584295_108585855
transcript_37402.known	chr3	-	2419	19	FSM	ENSMUSG00000027882.19	ENSMUST00000102621.11	2419	19	0	0	0	0	multi-exon	FALSE	canonical	1	38	junction_10	22.0233461984726	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGAGTTTTTCTTTCT	NA	False	NA	3	True	AATAAA	-17	NA	108747827	108700491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_108701181_108702117_108702270_108704696_108704783_108706539_108706633_108707370_108707478_108708050_108708190_108709426_108709508_108710861_108710928_108712373_108712432_108712553_108712650_108717192_108717318_108720193_108720285_108723640_108723796_108729103_108729205_108729830_108729910_108733321_108733399_108734341_108734424_108734888_108734939_108747735
transcript_37410.known	chr3	-	3050	7	FSM	ENSMUSG00000027881.15	ENSMUST00000129273.8	3050	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	171.074707527313	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGGTGTTGGTTTCCCC	6881	False	NA	-7	True	AATAAA	-20	NA	108819012	108810120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_108812079_108812426_108812651_108815102_108815164_108815247_108815400_108815651_108815721_108817658_108817712_108818479
transcript_37411.known	chr3	-	3026	6	FSM	ENSMUSG00000027881.15	ENSMUST00000029480.9	3026	6	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_4	114.013332553697	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCTGGGTGTTGGTTTCC	6850	False	NA	-9	True	AATAAA	-18	NA	108819043	108810122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_108812079_108812426_108812651_108815102_108815164_108815247_108815400_108815651_108815721_108818479
transcript_37415.known	chr3	+	3431	10	FSM	ENSMUSG00000040322.11	ENSMUST00000029477.11	3431	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	3.55902608401044	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTTGTTTTCTAATTGTC	4475	False	NA	NA	False	ATTAAA	-22	NA	109030464	109075773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_109030704_109043527_109043655_109056798_109056887_109062309_109062422_109064162_109064322_109065813_109065961_109066663_109066772_109068532_109068701_109070734_109070886_109073641
transcript_37416.known	chr3	-	3051	2	FSM	ENSMUSG00000049300.12	ENSMUST00000190378.2	3051	2	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTTGTAACCTGGTCTAT	NA	False	NA	-8	True	AATAAA	-18	NA	110158309	110153427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_110155172_110157002
transcript_37417.known	chr3	-	2450	1	FSM	ENSMUSG00000049300.12	ENSMUST00000106567.2	2450	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATTTGCTGGGGCTCTATT	NA	False	NA	-12	True	ATTAAA	-19	NA	110158314	110155864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_110155900_110158300
transcript_37418.known	chr3	-	1839	15	FSM	ENSMUSG00000027981.15	ENSMUST00000106536.8	1839	15	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_8	14.9497457489813	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGTCTAATTTTTCATTA	NA	False	NA	-1	True	AATAAA	-16	NA	113423798	113399112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_113399297_113401988_113402061_113402686_113402820_113404706_113404766_113404857_113404953_113407406_113407566_113409011_113409161_113410396_113410523_113413673_113413817_113414757_113414827_113415480_113415593_113416014_113416099_113418587_113418707_113421993_113422042_113423511
transcript_37419.known	chr3	-	3046	2	FSM	ENSMUSG00000045092.9	ENSMUST00000055676.4	3046	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTTTTGTGAAGAAAACTT	NA	False	NA	1	True	AATAAA	-18	NA	115508721	115504081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_115506764_115508357
transcript_3742.known	chr10	-	876	2	FSM	ENSMUSG00000097327.8	ENSMUST00000069372.7	876	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTCCGGAGCCTTCGCGT	NA	False	NA	NA	False	NA	NA	NA	22025169	22020319	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_22020414_22024387
transcript_37426.nnic	chr3	+	1151	9	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_8	88.5183596775268	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTGTTTTATAATCTCC	7708	False	NA	8	True	AATAAA	-18	NA	115681781	115722737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157_115722250_115722480
transcript_37427.nnic	chr3	+	1307	9	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	90.812220405626	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTGTTTTATAATCTCC	7708	False	NA	8	True	AATAAA	-18	NA	115681781	115722737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157_115722405_115722479
transcript_37428.nnic	chr3	+	1537	9	NNC	ENSMUSG00000033554.18	novel	1576	8	NA	NA	-14	-14	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	90.812220405626	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTTAAAAAAAAGGTAGC	7708	False	NA	NA	False	NA	NA	NA	115681781	115722967	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157_115722405_115722479
transcript_3743.known	chr10	+	1579	9	FSM	ENSMUSG00000053219.16	ENSMUST00000181645.8	1579	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	39.8708853676464	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	5	True	AATAAA	-15	NA	22034467	22059816	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_22034618_22047902_22048001_22049079_22049150_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
transcript_37432.known	chr3	+	1576	8	FSM	ENSMUSG00000033554.18	ENSMUST00000043342.10	1576	8	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_6	12.9331089117215	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGCAGTCAGCGACTGAG	7758	False	NA	NA	False	TTTAAA	-6	NA	115681831	115722981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_115681927_115682088_115682247_115686360_115686486_115693343_115693453_115708688_115708810_115718860_115718901_115720345_115720450_115722157
transcript_37438.known	chr3	-	739	3	FSM	ENSMUSG00000054426.12	ENSMUST00000188260.7	739	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	22	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTTGGCTATGGTG	944	False	NA	-5	True	NA	NA	NA	115681743	115675229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_115675488_115679862_115680025_115681424
transcript_37440.known	chr3	-	433	2	FSM	ENSMUSG00000054426.12	ENSMUST00000185424.2	433	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATTGCCTTGGCTATGG	1086	False	NA	-7	True	NA	NA	NA	115681601	115675231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_115675488_115681424
transcript_37441.known	chr3	-	625	2	FSM	ENSMUSG00000054426.12	ENSMUST00000185681.2	625	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTGCCTTGGCTATGGTG	908	False	NA	-5	True	NA	NA	NA	115681779	115675229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_115675488_115681412
transcript_37442.known	chr3	-	9020	11	FSM	ENSMUSG00000054414.5	ENSMUST00000067485.4	9020	11	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_7	12.5940462123973	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGAGTCATGACTCTTG	108	False	NA	NA	False	ATTAAA	-17	NA	115801055	115732621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_115740361_115747700_115747851_115750519_115750611_115772292_115772429_115775410_115775462_115778473_115778624_115783660_115783788_115784375_115784464_115786574_115786689_115800482_115800585_115800783
transcript_37447.known	chr3	+	3000	5	FSM	ENSMUSG00000027963.15	ENSMUST00000029575.12	3000	5	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	7.08872343937891	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGGGTGCTCTGGTGACGTG	19	False	NA	23	True	AATAAA	-34	NA	115801110	115822666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_115801532_115804270_115804346_115817655_115818084_115818973_115819045_115820661
transcript_37450.known	chr3	+	2840	5	FSM	ENSMUSG00000027963.15	ENSMUST00000106502.2	2840	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	20.597329924046	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTCATCCACTGTCAAA	52	False	NA	-34	True	AATACA	-45	NA	115801868	115822609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_115802187_115804270_115804346_115817655_115818084_115818973_115819045_115820661
transcript_37455.known	chr3	-	1594	11	FSM	ENSMUSG00000000339.15	ENSMUST00000000348.15	1594	11	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_7	31.9274176844918	267	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGCTGCTGCTTTTTTA	NA	False	NA	0	True	AATAAA	-20	NA	116301857	116282611	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_116282988_116286631_116286737_116287731_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298118_116300483_116300628_116301399_116301501_116301593
transcript_37458.nnic	chr3	-	1368	10	NIC	ENSMUSG00000000339.15	novel	1594	11	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_1	97.8116103083428	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGCTGCTGCTTTTTTA	NA	False	NA	0	True	AATAAA	-20	NA	116301736	116282611	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_116282988_116287731_116287827_116289284_116289344_116291238_116291364_116293194_116293337_116294760_116294820_116297993_116298118_116300483_116300628_116301399_116301501_116301593
transcript_37461.known	chr3	+	3301	11	FSM	ENSMUSG00000000340.11	ENSMUST00000000349.11	3301	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_7	26.1091937830336	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTATGCCTTCATAGTA	NA	False	NA	10	True	AATAAA	-19	NA	116306718	116343630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_116306841_116313885_116314010_116317000_116317077_116326903_116327086_116328393_116328516_116332737_116332955_116333303_116333471_116337416_116337495_116339630_116339823_116339942_116340015_116341681
transcript_3747.nnic	chr10	+	1525	8	NIC	ENSMUSG00000053219.16	novel	1579	9	NA	NA	-44	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_1	37.3625371685793	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	5	True	AATAAA	-15	NA	22034423	22059816	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_22034618_22049079_22049150_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
transcript_37471.known	chr3	+	2404	17	FSM	ENSMUSG00000027959.15	ENSMUST00000198311.5	2404	17	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_15	13.4290671213603	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAATCTGCCACCTGAGA	NA	False	NA	NA	False	NA	NA	NA	116388656	116422796	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_116388828_116397110_116397172_116398845_116398926_116399313_116399419_116400971_116401144_116402032_116402099_116403912_116404033_116407554_116407747_116411904_116412100_116412208_116412299_116412372_116412553_116412899_116412982_116413706_116413841_116415031_116415158_116420721_116420817_116422166_116422262_116422356
transcript_37473.known	chr3	+	1894	14	FSM	ENSMUSG00000027959.15	ENSMUST00000198386.5	1894	14	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_7	10.1538461538462	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAGATGTCTGCAGCATCT	NA	False	NA	NA	False	TATAAA	-22	NA	116388630	116415251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_116388828_116397110_116397172_116398845_116398926_116399313_116399419_116400971_116401144_116402032_116402099_116403912_116404033_116407554_116407747_116411904_116412100_116412208_116412299_116412372_116412553_116412899_116412982_116413706_116413841_116415031
transcript_37483.known	chr3	-	1616	11	FSM	ENSMUSG00000033439.13	ENSMUST00000184963.8	1616	11	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	31.2251501197352	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAATCTGAGTGTGAGGCT	NA	False	NA	NA	False	AATAAA	-22	NA	116388485	116374742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_116375260_116376142_116376374_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
transcript_37484.known	chr3	-	1723	11	FSM	ENSMUSG00000033439.13	ENSMUST00000183638.8	1723	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	35.5437758264369	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCAATCTGAGTGTGAGGC	NA	False	NA	NA	False	AATAAA	-21	NA	116388509	116374743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_116375260_116376142_116376573_116378844_116378920_116379403_116379477_116382120_116382174_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287
transcript_37486.known	chr3	-	3402	12	FSM	ENSMUSG00000033439.13	ENSMUST00000041524.11	3402	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	35.6275499304904	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATCTGAGTGTGAGGCTT	NA	False	NA	NA	False	AATAAA	-23	NA	116408236	116374741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_116375260_116376142_116376573_116378844_116378920_116379403_116379477_116382120_116382289_116383139_116383247_116383382_116383453_116383878_116383942_116385841_116385909_116386112_116386160_116388287_116389243_116407407
transcript_37497.nic	chr3	-	1611	5	NIC	ENSMUSG00000033439.13	novel	459	7	NA	NA	-6	653	intron_retention	FALSE	canonical	3	112	junction_2	8.55496931613434	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTAACATTTGGTTCTGAG	NA	False	NA	NA	False	NA	NA	NA	116388542	116382563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_116383247_116383382_116383942_116385841_116385909_116386112_116386160_116388287
transcript_37501.known	chr3	-	2782	12	FSM	ENSMUSG00000089911.5	ENSMUST00000029570.9	2782	12	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_3	57.2050104723397	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTGATCTGTGAGTCCC	NA	False	NA	-1	True	AATAAA	-36	NA	116456326	116424812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_116426130_116427370_116427535_116428551_116428650_116429926_116430040_116434035_116434108_116434895_116435010_116435358_116435578_116439014_116439130_116441430_116441559_116442167_116442231_116445052_116445149_116456043
transcript_37507.nnic	chr3	+	2346	17	NNC	ENSMUSG00000033386.11	novel	6823	15	NA	NA	2058	55	at_least_one_novel_splicesite	FALSE	canonical	3	203	junction_1	41.3407618912617	51	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGAAAAGAAAGAATAAATG	NA	False	NA	NA	False	NA	NA	NA	116655273	116697182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_116655359_116659837_116659927_116671882_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717
transcript_37512.nnic	chr3	+	2226	16	NNC	ENSMUSG00000033386.11	novel	6823	15	NA	NA	2089	55	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	74.6183176795975	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGAAAAGAAAGAATAAATG	NA	False	NA	NA	False	NA	NA	NA	116655304	116697182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_116655359_116671882_116672100_116674415_116674553_116675406_116675502_116676697_116676846_116678755_116678939_116684553_116684653_116685488_116685637_116689136_116689251_116690326_116690443_116692811_116692899_116694252_116694351_116694601_116694661_116695962_116696107_116696578_116696641_116696717
transcript_37515.known	chr3	-	2021	9	FSM	ENSMUSG00000028007.14	ENSMUST00000029639.12	2021	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	4.05431868505671	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTAGGTTTAAGTTATTA	NA	False	NA	NA	False	AATAAA	-32	NA	117662585	117575295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_117576026_117594489_117594643_117623225_117623313_117626488_117626689_117630786_117630986_117632468_117632634_117633576_117633688_117640162_117640346_117662392
transcript_37516.known	chr3	-	1588	8	FSM	ENSMUSG00000028007.14	ENSMUST00000169812.8	1588	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	6.9045976991969	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTATGATGTGTTCATTT	NA	False	NA	NA	False	AATAAA	-20	NA	117662529	117575519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_117576026_117623225_117623313_117626488_117626689_117630786_117630986_117632468_117632634_117633576_117633688_117640162_117640346_117662392
transcript_37517.known	chr3	+	346	1	FSM	ENSMUSG00000106037.2	ENSMUST00000196114.2	346	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAGACAACTGAATAAATCG	NA	False	NA	-8	True	NA	NA	NA	119503164	119503510	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_119503200_119503500
transcript_37519.known	chr3	-	3777	14	FSM	ENSMUSG00000028134.12	ENSMUST00000200097.5	3777	14	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_1	15.6821233920295	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCTGTTCCTTTTTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	119577453	119512390	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_119514107_119514255_119514334_119514437_119514655_119517742_119517836_119518260_119518295_119519714_119519855_119533963_119534160_119541240_119541352_119541438_119541604_119545512_119545657_119546592_119546766_119555351_119555428_119575152_119575184_119576850
transcript_3752.nnic	chr10	+	1413	7	NIC	ENSMUSG00000053219.16	novel	1579	9	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	1	5	junction_1	36.5957647822805	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	5	True	AATAAA	-15	NA	22034465	22059816	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_22034618_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
transcript_37522.known	chr3	-	291	1	FSM	ENSMUSG00000105243.2	ENSMUST00000198123.2	291	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGATCTTCAGT	NA	False	NA	NA	False	AATAAA	-24	NA	120814425	120814134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_120814100_120814400
transcript_37527.known	chr3	-	1484	5	FSM	ENSMUSG00000028133.18	ENSMUST00000106466.10	1484	5	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	13.1244047484067	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCTTGTGTCTGAGAAGGA	NA	False	NA	NA	False	ATTAAA	-23	NA	120965344	120949046	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_120949707_120949835_120949952_120950049_120950166_120952416_120952905_120965240
transcript_37528.known	chr3	-	1145	4	FSM	ENSMUSG00000028133.18	ENSMUST00000039761.12	1145	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	14.8548533034381	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAAATGATTTCTTAAAG	NA	False	NA	-22	True	NA	NA	NA	120965343	120949513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_120949952_120950049_120950166_120952416_120952905_120965240
transcript_3753.known	chr10	+	1274	7	FSM	ENSMUSG00000053219.16	ENSMUST00000065527.11	1274	7	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	14.8286509463568	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGGTATGTGCTCCAGAAG	NA	False	NA	2	True	AATAAA	-12	NA	22049419	22059813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_22049436_22049774_22049866_22050191_22050310_22056516_22056772_22057023_22057288_22057844_22058015_22059453
transcript_37532.known	chr3	-	2260	3	FSM	ENSMUSG00000028133.18	ENSMUST00000098650.4	2260	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TGAGAAAAAAAAAAAACAAA	NA	False	NA	NA	False	GGGGCT	-41	NA	120965343	120962819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_120964832_120964923_120965069_120965240
transcript_37535.known	chr3	+	2037	4	FSM	ENSMUSG00000039887.12	ENSMUST00000039442.12	2037	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	14.5143607047182	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCCAGGTATTTTAAGCA	NA	False	NA	NA	False	NA	NA	NA	121085421	121156743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_121085633_121092252_121092408_121113728_121113861_121155204
transcript_37537.nic	chr3	+	553	2	ISM	ENSMUSG00000039887.12	ENSMUST00000198341.2	831	3	-162	21761	-45	-21297	5prime_fragment	FALSE	canonical	3	72	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAGAATTTCTTTAAGAT	NA	False	NA	NA	False	AATAAA	-42	NA	121085376	121092549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_121085633_121092252
transcript_37540.known	chr3	+	2049	7	FSM	ENSMUSG00000053931.12	ENSMUST00000029773.13	2049	7	0	0	0	0	multi-exon	FALSE	canonical	3	4254	junction_2	486.023204750098	1216	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACAGGCTGGTTATTTTCT	NA	False	NA	27	True	AATAAA	-27	NA	121220145	121251856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_121220478_121243597_121243720_121243940_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
transcript_37541.known	chr3	+	2214	6	FSM	ENSMUSG00000053931.12	ENSMUST00000199188.5	2214	6	0	0	0	0	multi-exon	FALSE	canonical	3	4363	junction_2	396.918329130817	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGAACCACAGGCTGGT	NA	False	NA	19	True	AATAAA	-19	NA	121220193	121251848	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_121220478_121243597_121244008_121245031_121245170_121245531_121245649_121248595_121248743_121250730
transcript_37542.known	chr3	-	2620	15	FSM	ENSMUSG00000039865.9	ENSMUST00000039197.9	2620	15	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_10	3.70672307009404	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGTTTGTTCATCTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	121326053	121253176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_121253726_121254750_121254988_121257062_121257201_121279910_121279998_121283846_121284004_121291367_121291534_121303022_121303210_121303840_121303966_121305970_121306061_121307305_121307467_121318475_121318570_121319315_121319453_121320712_121320856_121325315_121325421_121325809
transcript_37543.known	chr3	+	1872	6	FSM	ENSMUSG00000028128.14	ENSMUST00000029771.13	1872	6	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	13.6176356244394	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGCATTTATATCTTCCACT	NA	False	NA	NA	False	AATAAA	-22	NA	121517185	121528697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_121517452_121518625_121518732_121522985_121523204_121525172_121525352_121526029_121526190_121527754
transcript_37544.known	chr3	-	3489	23	FSM	ENSMUSG00000028127.11	ENSMUST00000029770.8	3489	23	0	0	0	0	multi-exon	TRUE	canonical	3	145	junction_14	20.5277981251709	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACATGTGCCTGACCTTTT	7131	False	NA	-1	True	ATTAAA	-22	NA	121608951	121552555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_121553959_121555063_121555121_121558649_121558755_121562270_121562391_121562815_121562906_121563000_121563067_121563163_121563242_121565951_121566016_121567637_121567711_121567790_121567883_121569079_121569172_121569265_121569364_121569450_121569521_121570645_121570716_121573203_121573347_121575576_121575634_121577659_121577784_121578121_121578220_121579650_121579721_121585382_121585472_121586452_121586552_121590097_121590135_121608657
transcript_37547.known	chr3	+	3311	12	FSM	ENSMUSG00000028121.9	ENSMUST00000029766.9	3311	12	0	0	0	0	multi-exon	TRUE	canonical	3	116	junction_1	21.0877740616698	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGTCTCTTTATTATTGA	NA	False	NA	NA	False	AATATA	-22	NA	122213426	122323840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_122213833_122220093_122220404_122248701_122248742_122298575_122298705_122301774_122302221_122304867_122304972_122305999_122306653_122312911_122313028_122316817_122316990_122318572_122318685_122318935_122319149_122323230
transcript_37552.known	chr3	+	2429	7	FSM	ENSMUSG00000039756.13	ENSMUST00000035776.10	2429	7	0	0	0	0	multi-exon	FALSE	canonical	3	1082	junction_6	112.264073604258	873	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGCCTCTTGGAATAA	NA	False	NA	23	True	AATAAA	-19	NA	122068036	122078920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_122068128_122068846_122070460_122072394_122072534_122074376_122074473_122075977_122076143_122078042_122078153_122078705
transcript_37557.known	chr3	+	1160	2	FSM	ENSMUSG00000054091.10	ENSMUST00000106429.6	1160	2	0	0	0	0	multi-exon	FALSE	canonical	3	1657	junction_1	0	1585	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAGTTTCACACTGTGTCA	NA	False	NA	22	True	NA	NA	NA	122717851	122719833	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_122718306_122719127
transcript_37559.known	chr3	-	1984	8	FSM	ENSMUSG00000039701.12	ENSMUST00000199923.5	1984	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_5	4.92391083988974	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATTTAATGTTTCTTCAA	NA	False	NA	NA	False	NA	NA	NA	122778159	122750817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_122751381_122752680_122752787_122754803_122754887_122754967_122755082_122756532_122756668_122757903_122757997_122762237_122762899_122777930
transcript_37560.known	chr3	+	3903	23	FSM	ENSMUSG00000039234.12	ENSMUST00000047923.12	3903	23	0	0	0	0	multi-exon	TRUE	canonical	3	54	junction_9	11.2449253935915	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTACTGTGTTTTATGTCT	NA	False	NA	18	True	AATAAA	-18	NA	123061103	123159290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_123061186_123063242_123063403_123072793_123072918_123084064_123084214_123087226_123087503_123087807_123087942_123093205_123093318_123099441_123099570_123121156_123121296_123123972_123124089_123130134_123130260_123136689_123136882_123137472_123137567_123143557_123143675_123144348_123144520_123147038_123147136_123147224_123147371_123148595_123148735_123149371_123149491_123152485_123152666_123154468_123154661_123156282_123156373_123158469
transcript_37561.known	chr3	-	2741	11	FSM	ENSMUSG00000028114.17	ENSMUST00000029759.16	2741	11	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_2	25.8534330408942	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTGTTTTCCTTAGA	NA	False	NA	-2	True	AATAAA	-17	NA	123179757	123161945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_123163340_123164923_123165135_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
transcript_37564.nnic	chr3	-	2422	10	NIC	ENSMUSG00000028114.17	novel	2741	11	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_1	76.5041756304118	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTGTTTTCCTTAGA	NA	False	NA	-2	True	AATAAA	-17	NA	123179649	123161945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_123163340_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
transcript_37565.known	chr3	-	4202	10	FSM	ENSMUSG00000028114.17	ENSMUST00000174323.6	4202	10	0	0	0	0	multi-exon	TRUE	canonical	3	213	junction_1	26.0261027564896	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAGTTTGTTTTCCTTAGA	NA	False	NA	-2	True	AATAAA	-17	NA	123179634	123161945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_123165135_123166205_123166323_123167618_123167712_123168393_123168536_123169793_123169885_123173868_123173957_123174296_123174378_123176403_123176492_123177244_123177334_123179410
transcript_37566.known	chr3	-	448	3	FSM	ENSMUSG00000104960.2	ENSMUST00000196466.2	448	3	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_1	15.5	1066	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGTGTCCTGTTTCTGGA	NA	False	NA	48	True	AATAAA	-21	NA	123302053	123301200	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_123301310_123301465_123301512_123301760
transcript_37567.known	chr3	-	528	2	FSM	ENSMUSG00000104960.2	ENSMUST00000199645.2	528	2	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAAGACTGTGTCCTGTTT	NA	False	NA	43	True	AATAAA	-16	NA	123301982	123301205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_123301512_123301760
transcript_37568.known	chr3	-	776	1	FSM	ENSMUSG00000104960.2	ENSMUST00000198509.2	776	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGACTGTGTCCTGTTTCT	NA	False	NA	45	True	AATAAA	-18	NA	123301979	123301203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_123301200_123302000
transcript_37570.known	chr3	-	2121	13	FSM	ENSMUSG00000027968.12	ENSMUST00000029588.10	2121	13	0	0	0	0	multi-exon	FALSE	canonical	3	466	junction_6	145.639680948108	497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTTTGGTTTTATTTACA	NA	False	NA	-1	True	AATAAA	-17	NA	127346998	127330362	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_127330684_127334193_127334286_127334447_127334608_127336680_127336806_127337802_127337928_127339474_127339620_127339695_127340053_127340124_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
transcript_37574.nic	chr3	-	822	6	ISM	ENSMUSG00000027968.12	ENSMUST00000029588.10	2121	13	-26	9762	-26	-5	5prime_fragment	FALSE	canonical	3	772	junction_1	64.3011663968858	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTGCTTACTTAGAGTG	NA	False	NA	NA	False	AAAACA	-28	NA	127347024	127340124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_127340219_127340302_127340468_127340569_127340654_127340738_127340840_127341010_127341196_127346831
transcript_37575.known	chr3	+	3804	6	FSM	ENSMUSG00000051278.13	ENSMUST00000195955.2	3804	6	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	13.6	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTTATGTATGTGCAT	NA	False	NA	NA	False	NA	NA	NA	127347281	127358487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_127347305_127348944_127349035_127349841_127349923_127353219_127353280_127354544_127354731_127355123
transcript_37576.nic	chr3	+	956	5	ISM	ENSMUSG00000051278.13	ENSMUST00000195955.2	3804	6	-163	3404	-19	-3404	5prime_fragment	FALSE	canonical	3	63	junction_3	5.7227615711298	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAATGGTATAGCTGAC	NA	False	NA	NA	False	AATAAA	-16	NA	127347118	127355083	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_127347305_127348944_127349035_127349841_127349923_127353219_127353280_127354544
transcript_37577.known	chr3	-	1598	1	FSM	ENSMUSG00000074238.7	ENSMUST00000198626.2	1598	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATGCATTAGGTTATGC	NA	False	NA	-8	True	AATAAA	-16	NA	127602513	127600915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_127600900_127602500
transcript_37579.known	chr3	+	5951	5	FSM	ENSMUSG00000041220.11	ENSMUST00000071402.7	5951	5	0	0	0	0	multi-exon	FALSE	canonical	1	87	junction_1	129.619635858152	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTTTCTAGTTCTTTGTTG	NA	False	NA	17	True	AATAAA	-25	NA	129326034	129432144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_129326145_129326296_129326418_129398689_129398822_129421931_129422084_129426708
transcript_37583.known	chr3	+	2610	4	FSM	ENSMUSG00000041220.11	ENSMUST00000199910.5	2610	4	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	79.2001683499894	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAGAAAGAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	129326003	129428620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_129326418_129398689_129398822_129421931_129422084_129426708
transcript_37587.known	chr3	-	655	3	FSM	ENSMUSG00000105837.5	ENSMUST00000197370.5	655	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	7.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGAACCCATTTTTTTC	6961	False	NA	NA	False	AATAAA	-8	NA	129325758	129321115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_129321464_129324707_129324814_129325557
transcript_37588.nnic	chr3	-	644	3	NNC	ENSMUSG00000105837.5	novel	655	3	NA	NA	-102	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	0	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGAACCCATTTTTTTC	6859	False	NA	NA	False	AATAAA	-8	NA	129325860	129321115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_129321464_129324707_129324814_129325670
transcript_37589.nnic	chr3	-	1050	7	NNC	ENSMUSG00000028010.17	novel	1271	7	NA	NA	204	0	at_least_one_novel_splicesite	FALSE	canonical	3	71	junction_6	620.417444593199	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTACGTTTATTGAACG	NA	False	NA	-8	True	AATAAA	-15	NA	129624805	129618567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_129618859_129619196_129619266_129620472_129620624_129622553_129622614_129622985_129623141_129624243_129624503_129624740
transcript_37591.known	chr3	-	1271	7	FSM	ENSMUSG00000028010.17	ENSMUST00000029643.15	1271	7	0	0	0	0	multi-exon	FALSE	canonical	3	868	junction_6	342.204130113397	1029	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTTTATTGAACGGAACCTA	NA	False	NA	-1	True	AATAAA	-22	NA	129625045	129618560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_129618859_129619196_129619266_129620472_129620624_129622553_129622614_129622985_129623141_129624243_129624503_129624766
transcript_37592.known	chr3	+	1561	4	FSM	ENSMUSG00000027999.16	ENSMUST00000029629.15	1561	4	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_1	3.68178700572909	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGAGTGTTTTCAAGTCT	NA	False	NA	25	True	AATAAA	-25	NA	129672254	129689474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_129672585_129682529_129682607_129683916_129684083_129688486
transcript_37596.known	chr3	+	1456	7	FSM	ENSMUSG00000027997.10	ENSMUST00000029626.9	1456	7	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_5	8.11206234909197	147	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATGGCACTCTGAGGAT	NA	False	NA	NA	False	AATAAA	-14	NA	129695073	129707752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_129695156_129699114_129699157_129699551_129699702_129700049_129700127_129704171_129704348_129705766_129705924_129706980
transcript_37598.known	chr3	+	567	1	FSM	ENSMUSG00000063328.7	ENSMUST00000076703.7	567	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	54	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GCAACAAGAAAATATTTCAA	9169	False	NA	NA	False	NA	NA	NA	129862060	129862627	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_129862100_129862600
transcript_37600.known	chr3	-	1067	4	FSM	ENSMUSG00000041084.9	ENSMUST00000043937.9	1067	4	0	0	0	0	multi-exon	FALSE	canonical	3	1781	junction_1	135.7063823931	1202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGTGGACTTTTTGTTGT	NA	False	NA	1	True	AATAAA	-24	NA	130503093	130489560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_130490128_130496964_130497163_130499598_130499693_130502885
transcript_37603.known	chr3	-	1720	1	FSM	ENSMUSG00000041084.9	ENSMUST00000197828.2	1720	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAGAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130503065	130501345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_130501300_130503100
transcript_37610.known	chr3	-	624	5	FSM	ENSMUSG00000062006.13	ENSMUST00000062601.14	624	5	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_4	3512.03875085398	346	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTTATCTGTGATTTG	NA	False	NA	-11	True	AATAAA	-20	NA	130523986	130520479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523769
transcript_37611.known	chr3	-	495	5	FSM	ENSMUSG00000062006.13	ENSMUST00000196202.5	495	5	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_4	3611.9776092883	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATATGCACATTTTTTAAGT	NA	False	NA	-56	True	NA	NA	NA	130523970	130520524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523837
transcript_37612.known	chr3	-	480	5	FSM	ENSMUSG00000062006.13	ENSMUST00000079085.11	480	5	0	0	0	0	multi-exon	FALSE	canonical	3	6284	junction_4	1283.0290331867	1325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTACGCTTCCGTTATCT	NA	False	NA	-19	True	AATAAA	-12	NA	130524047	130520487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_130520609_130522396_130522501_130522699_130522800_130522877_130522952_130523966
transcript_37614.known	chr3	-	477	4	FSM	ENSMUSG00000062006.13	ENSMUST00000135691.2	477	4	0	0	0	0	multi-exon	FALSE	canonical	3	6284	junction_3	871.596619237745	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTTTAAGTAATAAAAATCAA	NA	False	NA	-44	True	AATAGA	-11	NA	130523991	130520512	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_130520609_130522396_130522501_130522699_130522952_130523966
transcript_37619.known	chr3	-	1789	8	FSM	ENSMUSG00000027984.9	ENSMUST00000029610.9	1789	8	0	0	0	0	multi-exon	FALSE	canonical	3	722	junction_3	33.5492327841959	547	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGGCCTGTCTTCTCTGA	NA	False	NA	NA	False	AATAAA	-43	NA	131065750	131027067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_131027937_131029191_131029309_131034585_131034659_131036164_131036255_131038808_131038936_131042064_131042223_131043451_131043581_131065524
transcript_37626.known	chr3	-	1716	4	FSM	ENSMUSG00000027983.14	ENSMUST00000200236.2	1716	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGGCTATGGACAGCAGT	NA	False	NA	NA	False	NA	NA	NA	131096849	131086936	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_131087334_131089036_131089199_131091434_131092071_131096328
transcript_37627.nnic	chr3	+	2616	13	NIC	ENSMUSG00000028032.14	novel	2811	15	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	15.1957139424978	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGGTTTGTGTGCATAT	NA	False	NA	7	True	AATAAA	-18	NA	131270625	131349432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_131270745_131271708_131271822_131285071_131285187_131288141_131288378_131288847_131288987_131290808_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
transcript_37628.known	chr3	+	2648	13	FSM	ENSMUSG00000028032.14	ENSMUST00000199878.5	2648	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	13.8531484588242	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATGGTTTGTGTGCATA	NA	False	NA	6	True	AATAAA	-17	NA	131270656	131349431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_131270745_131273262_131273440_131285071_131285187_131288141_131288378_131288847_131288987_131290808_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
transcript_37629.known	chr3	+	2600	12	FSM	ENSMUSG00000028032.14	ENSMUST00000029666.14	2600	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	6.54292880561694	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGGTTTGTGTGCATAT	NA	False	NA	7	True	AATAAA	-18	NA	131270528	131349432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_131270745_131285071_131285187_131288141_131288378_131288847_131288987_131290808_131290928_131305625_131305740_131307735_131307848_131311605_131311812_131313088_131313225_131324781_131325051_131337346_131337577_131348724
transcript_3763.nnic	chr10	+	1181	7	NNC	ENSMUSG00000078452.11	novel	1271	7	NA	NA	-22	-134	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	16.5672032106274	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAACACATTTTAAAATG	NA	False	NA	NA	False	AATAAA	-24	NA	22237770	22249904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_22237831_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
transcript_37631.known	chr3	+	5195	3	FSM	ENSMUSG00000028030.13	ENSMUST00000198147.5	5195	3	0	0	0	0	multi-exon	FALSE	canonical	1	21	junction_1	47	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATATTTCTAAATTAC	NA	False	NA	NA	False	NA	NA	NA	132389928	132404890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_132390156_132392532_132392754_132400143
transcript_37636.known	chr3	-	1126	7	FSM	ENSMUSG00000028029.12	ENSMUST00000029663.11	1126	7	0	0	0	0	multi-exon	FALSE	canonical	3	854	junction_6	52.4195150259477	1141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTCTTGCTCATTTTTTG	NA	False	NA	-16	True	AATAAA	-31	NA	132389645	132366259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_132366503_132373145_132373315_132377739_132377949_132379725_132379891_132380509_132380624_132382765_132382900_132389553
transcript_3764.nnic	chr10	+	1315	7	NNC	ENSMUSG00000078452.11	novel	1271	7	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_5	16.5672032106274	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	22237770	22250038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_22237831_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
transcript_37640.known	chr3	-	3503	12	FSM	ENSMUSG00000028018.16	ENSMUST00000029651.11	3503	12	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_3	19.4795930515641	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTTGACTCCTCTCAGAT	NA	False	NA	-3	True	NA	NA	NA	132797586	132687512	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_132688981_132692145_132692216_132701926_132701958_132704585_132704720_132709424_132709554_132711148_132711194_132711320_132711437_132768326_132768421_132777660_132777913_132787799_132788268_132790336_132790787_132797340
transcript_37643.nic	chr3	-	1508	4	ISM	ENSMUSG00000028018.16	ENSMUST00000161577.8	1975	10	-80	72979	-2	9419	5prime_fragment	FALSE	canonical	3	184	junction_1	16.8720676464584	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTATGCATCTTATTTATA	NA	False	NA	NA	False	AATAAA	-19	NA	132797588	132777570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_132777913_132787799_132788268_132790336_132790787_132797340
transcript_37645.known	chr3	+	3101	7	FSM	ENSMUSG00000028016.10	ENSMUST00000029650.9	3101	7	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	13.0213499897497	138	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCCTGTAGATGTTTTTG	NA	False	NA	NA	False	AATAAA	-23	NA	132797600	132816749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_132797738_132802508_132802674_132804170_132804324_132806383_132806569_132808117_132808278_132812699_132812847_132814595
transcript_37648.known	chr3	+	1226	12	FSM	ENSMUSG00000028013.17	ENSMUST00000029644.16	1226	12	0	0	0	0	multi-exon	TRUE	canonical	3	471	junction_4	36.8801946894343	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTCTTTTATATATTTAT	NA	False	NA	21	True	AATAAA	-28	NA	133015870	133083839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_133016043_133026696_133026762_133028332_133028378_133032408_133032463_133036153_133036274_133045023_133045111_133053824_133053952_133073583_133073712_133076140_133076227_133079383_133079454_133082309_133082350_133083607
transcript_3765.known	chr10	+	1271	7	FSM	ENSMUSG00000078452.11	ENSMUST00000095795.5	1271	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	20.4402924527893	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTGCTCCAGAAGTTT	NA	False	NA	NA	False	AATAAA	-15	NA	22237792	22250038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_22237809_22238169_22238261_22238586_22238705_22246764_22247014_22247265_22247530_22248087_22248258_22249675
transcript_37653.known	chr3	-	484	2	FSM	ENSMUSG00000040943.13	ENSMUST00000195913.2	484	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATTAGATTTCTTTCTGT	NA	False	NA	NA	False	AATAAA	-38	NA	133250047	133244522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_133244920_133249960
transcript_37654.known	chr3	+	7910	46	FSM	ENSMUSG00000045328.12	ENSMUST00000062893.12	7910	46	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_28	46.2867818371455	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATAAGCCTTGTTGTGTG	NA	False	NA	101	True	TTTAAA	-43	NA	134918297	134979372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_134918476_134920864_134920957_134922092_134922183_134922306_134922426_134923013_134923134_134923793_134923876_134924234_134924303_134924384_134924451_134926040_134926093_134927988_134928077_134928930_134929061_134930717_134930838_134934517_134934677_134935808_134935966_134937125_134937215_134938657_134938826_134939488_134939564_134939731_134939852_134940593_134940717_134940826_134940984_134941217_134941373_134943263_134943579_134943687_134943961_134944075_134944232_134945517_134945710_134946708_134946868_134947823_134948115_134948237_134948394_134949360_134949640_134952247_134952407_134952577_134952863_134953098_134953387_134953830_134953990_134954142_134954425_134955416_134955576_134957182_134957444_134961207_134961310_134962237_134962457_134964952_134965148_134965739_134965944_134967279_134967508_134970068_134970182_134971671_134971770_134974700_134974882_134976434_134976722_134978911
transcript_37656.nic	chr3	+	1211	11	ISM	ENSMUSG00000045328.12	ENSMUST00000062893.12	7910	46	15	50171	15	-23205	5prime_fragment	FALSE	canonical	3	177	junction_10	20.4843842963366	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCCAAGGCTTCAGTGAT	NA	False	NA	NA	False	AATAAA	-39	NA	134918312	134929201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_134918476_134920864_134920957_134922092_134922183_134922306_134922426_134923013_134923134_134923793_134923876_134924234_134924303_134924384_134924451_134926040_134926093_134927988_134928077_134928930
transcript_37657.known	chr3	+	1172	10	FSM	ENSMUSG00000028167.16	ENSMUST00000120397.8	1172	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	10.4880884817015	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTAGTTTTTTTTCTTAA	NA	False	NA	21	True	AATAAA	-31	NA	134986981	135010187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_134987130_134991275_134991429_134994021_134994101_134995315_134995413_134996754_134996864_135000988_135001050_135002580_135002695_135006434_135006494_135007322_135007416_135009928
transcript_37658.known	chr3	+	1059	10	FSM	ENSMUSG00000028167.16	ENSMUST00000029817.11	1059	10	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	15.3099660916801	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTAGTTTTTTTTCTTAA	NA	False	NA	21	True	AATAAA	-31	NA	134987021	135010187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_134987130_134991348_134991429_134994021_134994101_134995315_134995413_134996754_134996864_135000988_135001050_135002580_135002695_135006434_135006494_135007322_135007416_135009928
transcript_37659.known	chr3	+	4818	13	FSM	ENSMUSG00000037994.15	ENSMUST00000051849.10	4818	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.55232800084976	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGAAGGAGCTGTGAC	NA	False	NA	NA	False	NA	NA	NA	135013505	135051148	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_135013543_135022814_135022955_135024040_135024222_135027646_135027818_135029389_135029533_135030269_135030398_135031854_135032031_135034752_135034860_135035528_135035679_135036343_135036453_135038176_135038314_135042114_135042336_135048030
transcript_37666.nic	chr3	+	1967	11	ISM	ENSMUSG00000050150.17	ENSMUST00000078568.12	2248	13	-38	3709	-33	1035	5prime_fragment	FALSE	canonical	3	12	junction_9	35.3950561519543	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGCTTTATTTTTGTTT	NA	False	NA	6	True	AATACA	-16	NA	135053756	135099879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097860_135098011_135099720
transcript_37667.known	chr3	+	2072	11	FSM	ENSMUSG00000050150.17	ENSMUST00000160460.8	2072	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	39.2898205646195	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACAGATTTCTTCATGTA	NA	False	NA	NA	False	TTTAAA	-20	NA	135053818	135098844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135098457
transcript_37668.nic	chr3	+	1906	11	NIC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	-33	1035	combination_of_known_junctions	FALSE	canonical	3	24	junction_9	33.6964389809962	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGCTTTATTTTTGTTT	NA	False	NA	6	True	AATACA	-16	NA	135053756	135099879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135099720
transcript_37674.nnic	chr3	+	1624	10	NIC	ENSMUSG00000050150.17	novel	2248	13	NA	NA	-19	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	22.3247634193152	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTGCTATGTCTCATGATT	NA	False	NA	4	True	ATTAAA	-16	NA	135053770	135103585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_135053884_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097860_135098011_135099720_135099830_135103356
transcript_37678.nnic	chr3	+	1384	9	NIC	ENSMUSG00000050150.17	novel	2072	11	NA	NA	-19	1035	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	19.8616307235836	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGCTTTATTTTTGTTT	NA	False	NA	6	True	AATACA	-16	NA	135053770	135099879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_135053884_135063217_135063516_135077605_135077777_135078879_135079023_135080034_135080163_135088446_135088623_135096182_135096290_135097921_135098011_135099720
transcript_37680.nic	chr3	+	1450	7	ISM	ENSMUSG00000050150.17	ENSMUST00000160460.8	2072	11	-62	18607	-33	51	5prime_fragment	FALSE	canonical	3	60	junction_5	29.9146935282461	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTGTATAGCCAGGTTCT	NA	False	NA	5	True	ATTAAA	-17	NA	135053756	135080237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034
transcript_37681.nic	chr3	+	1675	7	ISM	ENSMUSG00000050150.17	ENSMUST00000160460.8	2072	11	-62	18382	-33	0	5prime_fragment	FALSE	canonical	3	60	junction_5	29.9146935282461	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTCTCAAAAATCAATTGATC	NA	False	NA	NA	False	AAAAAG	-3	NA	135053756	135080462	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217_135063516_135077605_135077777_135078879_135079023_135080034
transcript_37688.known	chr3	+	1196	4	FSM	ENSMUSG00000050150.17	ENSMUST00000160047.8	1196	4	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	29.6348143611905	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTGGTCTTCAAATTTAA	NA	False	NA	14	True	AATAAA	-25	NA	135053806	135063828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_135053884_135054087_135054535_135060771_135060833_135063217
transcript_37690.known	chr3	+	1407	4	FSM	ENSMUSG00000050150.17	ENSMUST00000160941.8	1407	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	61.0136596727869	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAATTGTATTCATTG	NA	False	NA	NA	False	NA	NA	NA	135053806	135064067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_135053859_135054090_135054535_135060771_135060833_135063217
transcript_37697.known	chr3	-	3361	3	FSM	ENSMUSG00000028165.10	ENSMUST00000029815.8	3361	3	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_1	1	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTTTTCTTTTTTATGT	NA	False	NA	1	True	ATTAAA	-20	NA	135129686	135112172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_135114652_135116771_135116987_135129019
transcript_37705.known	chr3	+	1512	8	FSM	ENSMUSG00000078578.10	ENSMUST00000106291.10	1512	8	0	0	0	0	multi-exon	FALSE	canonical	2	536	junction_1	766.131549422427	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGTTAGCTGCCTGGAT	NA	False	NA	73	True	AATAAA	-13	NA	135143994	135171819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_135144114_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
transcript_37710.known	chr3	+	738	8	FSM	ENSMUSG00000078578.10	ENSMUST00000199613.5	738	8	0	0	0	0	multi-exon	FALSE	canonical	2	236	junction_1	865.692126071883	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAAATTACTGTTCCTTTTT	NA	False	NA	-4	True	AATAAA	-3	NA	135144076	135171047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_135144194_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
transcript_37715.known	chr3	+	3833	8	FSM	ENSMUSG00000078578.10	ENSMUST00000197859.5	3833	8	0	0	0	0	multi-exon	FALSE	canonical	2	870	junction_1	657.273775778808	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGGTCTTACTCAGTAAT	NA	False	NA	5	True	ATTAAA	-18	NA	135144325	135173959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_135144626_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
transcript_3772.known	chr10	-	2873	7	FSM	ENSMUSG00000071359.14	ENSMUST00000127698.8	2873	7	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_1	20.3367483471014	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTTAAGTATTCCCCCT	NA	False	NA	-7	True	AATAAA	-21	NA	22607346	22579777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587991_22607014
transcript_37721.known	chr3	+	2504	8	FSM	ENSMUSG00000078578.10	ENSMUST00000166033.6	2504	8	0	0	0	0	multi-exon	FALSE	canonical	2	723	junction_1	704.867942473291	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAATATGTAATTTGGACAT	NA	False	NA	NA	False	AATAAA	-29	NA	135144240	135172711	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_135144460_135145404_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
transcript_3773.nnic	chr10	-	1170	7	NNC	ENSMUSG00000071359.14	novel	2873	7	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_6	90.384364429548	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCTCTCTTCATATC	NA	False	NA	-15	True	AATAAA	-8	NA	22607250	22581279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587886_22607014
transcript_37732.known	chr3	+	2515	7	FSM	ENSMUSG00000078578.10	ENSMUST00000197539.5	2515	7	0	0	0	0	multi-exon	FALSE	canonical	2	2193	junction_4	278.873129258131	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGATTGTTTGACAAGT	NA	False	NA	11	True	AATAAA	-12	NA	135144897	135172434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_135145560_135160946_135161011_135161106_135161139_135164558_135164637_135165735_135165842_135168710_135168805_135170955
transcript_37734.known	chr3	+	3675	17	FSM	ENSMUSG00000028164.16	ENSMUST00000029814.10	3675	17	0	0	0	0	multi-exon	TRUE	canonical	3	85	junction_8	25.1755554804656	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCATTGAACACCATGTC	NA	False	NA	11	True	AATAAA	-19	NA	135191371	135277165	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_135191619_135212669_135212765_135216735_135216842_135217563_135217735_135223663_135223788_135228752_135228929_135230277_135230389_135248072_135248225_135250486_135250605_135253310_135253398_135254960_135255129_135256823_135257043_135260520_135260686_135268965_135269111_135272248_135272392_135273224_135273483_135275975
transcript_37737.nic	chr3	-	1738	7	ISM	ENSMUSG00000028163.18	ENSMUST00000129428.8	2520	13	14044	-227	2	0	3prime_fragment	FALSE	canonical	3	48	junction_1	5.39804491356722	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGTCTGATCTCTGCAAA	NA	False	NA	0	True	AATAAA	-25	NA	135300200	135290415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_135291277_135295087_135295266_135296076_135296250_135296540_135296608_135297314_135297440_135299591_135299695_135299969
transcript_37738.nic	chr3	+	804	3	Fusion	ENSMUSG00000046818.8_ENSMUSG00002076808.1	novel	241	3	NA	NA	47	344	multi-exon	FALSE	canonical	0	0	junction_1	33.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTTGTAGTTTGCCTGC	NA	False	NA	NA	False	AATAAA	-21	NA	137327281	137332279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr3_+_137327391_137329892_137330035_137331726
transcript_37739.known	chr3	+	2722	3	FSM	ENSMUSG00000046818.8	ENSMUST00000053855.8	2722	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	6.5	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTTGGCCTCTTTGTTT	NA	False	NA	NA	False	AATAAA	-18	NA	137329432	137334094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_137329645_137329892_137330035_137331726
transcript_37742.known	chr3	+	1069	5	FSM	ENSMUSG00000037894.14	ENSMUST00000041045.14	1069	5	0	0	0	0	multi-exon	FALSE	canonical	3	13832	junction_1	739.113320134335	5715	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGTGGTACTTTTGTTGT	NA	False	NA	32	True	ATTAAA	-21	NA	137570247	137572683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571771_137571902_137572146
transcript_37745.known	chr3	+	810	5	FSM	ENSMUSG00000037894.14	ENSMUST00000174561.8	810	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	6290.0667921732	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTAGCTTTAAACTTGCT	NA	False	NA	-3	True	AATAAA	-12	NA	137570333	137572579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_137570458_137570893_137570972_137571280_137571395_137571840_137571902_137572146
transcript_37747.known	chr3	+	349	5	FSM	ENSMUSG00000037894.14	ENSMUST00000172696.2	349	5	0	0	0	0	multi-exon	FALSE	canonical	1	14	junction_2	6119.89262058576	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGCCTGGATTCCTTATT	NA	False	NA	NA	False	AAGAAA	-22	NA	137570454	137572208	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_137570458_137570893_137570972_137571318_137571395_137571771_137571902_137572146
transcript_3775.known	chr10	-	1195	7	FSM	ENSMUSG00000071359.14	ENSMUST00000095794.4	1195	7	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_6	96.5702104976248	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGATCTCTCTTCATATC	NA	False	NA	-15	True	AATAAA	-8	NA	22607837	22581279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_22581795_22583487_22583583_22583669_22583774_22585044_22585109_22585255_22585339_22587812_22587991_22607681
transcript_37760.known	chr3	-	427	1	FSM	ENSMUSG00000104675.2	ENSMUST00000195951.2	427	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGGTGTTTGTACATTCA	NA	False	NA	NA	False	AATAAA	-22	NA	137624206	137623779	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_137623800_137624200
transcript_37763.known	chr3	+	1295	7	FSM	ENSMUSG00000091512.6	ENSMUST00000168345.6	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_3	73.5090697351921	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGAGCTCTGTATAGGCCT	80	False	NA	2	True	AATAAA	-22	NA	137624286	137634526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_137624425_137624633_137624680_137625681_137625717_137630872_137630932_137632569_137632704_137633107_137633172_137633707
transcript_37765.known	chr3	+	733	7	FSM	ENSMUSG00000091512.6	ENSMUST00000197064.5	733	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	115.993773779266	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGGTCTGAGAACACCAC	60	False	NA	NA	False	TATAAA	-16	NA	137624266	137633980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_137624389_137624633_137624680_137625681_137625717_137630872_137630932_137632569_137632704_137633107_137633172_137633707
transcript_3777.known	chr10	-	490	7	FSM	ENSMUSG00000061983.8	ENSMUST00000073926.8	490	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1773.5106192709	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTGATTTTTCTCTTG	NA	False	NA	-25	True	AATAAA	-6	NA	23663086	23661102	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522_23662538_23662661_23662779_23662891_23662943_23663053
transcript_37771.known	chr3	+	675	6	FSM	ENSMUSG00000091512.6	ENSMUST00000196632.5	675	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	119.774120744007	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGGTCATTCGATTGCA	116	False	NA	NA	False	TATAAA	-37	NA	137624322	137634001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_137624425_137624633_137624680_137625681_137625717_137632569_137632704_137633107_137633172_137633707
transcript_37773.known	chr3	-	3083	9	FSM	ENSMUSG00000028159.15	ENSMUST00000029806.13	3083	9	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	5.49431524395898	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGTCCAACTTTTATAACA	NA	False	NA	NA	False	ATTAAA	-25	NA	137687306	137636767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_137638951_137641342_137641431_137643497_137643584_137644897_137644961_137646621_137646670_137655407_137655539_137667202_137667337_137671641_137671765_137687079
transcript_37779.known	chr3	+	4025	8	FSM	ENSMUSG00000004127.13	ENSMUST00000040321.13	4025	8	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_7	16.9609395196067	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTCAGCTAATGTTAAT	NA	False	NA	NA	False	AATAAA	-22	NA	137849208	137865582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_137849358_137853135_137853332_137854114_137854275_137855214_137855287_137856163_137856239_137857952_137858103_137860453_137860560_137862465
transcript_3778.nic	chr10	-	648	6	NIC	ENSMUSG00000061983.8	novel	584	6	NA	NA	2	0	intron_retention	FALSE	canonical	3	98	junction_3	1551.61727239677	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663098	23661080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522_23662779_23662891_23662943_23663053
transcript_37787.known	chr3	+	1492	9	FSM	ENSMUSG00000074207.11	ENSMUST00000004232.10	1492	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	3.01817411691241	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTTTTCTGTGAAACCT	NA	False	NA	NA	False	AATAAA	-28	NA	137983254	137996459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_137983498_137985491_137985594_137986134_137986274_137988196_137988285_137988375_137988596_137992452_137992714_137994509_137994646_137995562_137995702_137996295
transcript_37788.known	chr3	+	1314	9	FSM	ENSMUSG00000037797.15	ENSMUST00000013458.9	1314	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	1.58113883008419	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTGCTTGCTGCTCTTT	8785	False	NA	NA	False	TATAAA	-17	NA	138121255	138136653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_138121311_138123885_138123988_138124950_138125090_138126385_138126474_138127922_138128155_138129754_138130016_138133731_138133862_138134797_138134937_138136485
transcript_3779.known	chr10	-	584	6	FSM	ENSMUSG00000061983.8	ENSMUST00000218107.2	584	6	0	0	0	0	multi-exon	FALSE	canonical	3	2594	junction_5	774.773670177298	18225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663173	23661080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891_23662943_23663053
transcript_37792.known	chr3	+	1604	9	FSM	ENSMUSG00000028138.9	ENSMUST00000005964.7	1604	9	0	0	0	0	multi-exon	FALSE	canonical	3	1845	junction_1	151.305103598656	2838	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCAAGTATTCAGAAAACTT	4924	False	NA	NA	False	AATAAA	-18	NA	138148853	138161260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_138148955_138151050_138151153_138152843_138152986_138153612_138153701_138156659_138156880_138157004_138157266_138159502_138159639_138160428_138160568_138160845
transcript_37800.known	chr3	-	2686	11	FSM	ENSMUSG00000005813.13	ENSMUST00000029804.13	2686	11	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_4	33.5143252953121	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACTTTTTCTAGTTGTA	NA	False	NA	-9	True	ATTAAA	-15	NA	138195276	138164716	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_138166262_138168125_138168192_138171984_138172129_138174594_138174727_138177911_138178051_138179664_138179749_138180747_138180840_138184630_138184692_138186448_138186562_138188827_138188880_138195018
transcript_37806.known	chr3	+	4991	8	FSM	ENSMUSG00000028156.13	ENSMUST00000029803.12	4991	8	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	682.812550845279	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTGCTTGCTTTTTTTGGG	NA	False	NA	NA	False	ATTAAA	-16	NA	138231939	138265457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_138232056_138233028_138233076_138252081_138252189_138253419_138253516_138256023_138256088_138256653_138256768_138259342_138259483_138261150
transcript_37808.known	chr3	-	5016	13	FSM	ENSMUSG00000028273.16	ENSMUST00000029941.16	5016	13	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_4	21.3476514451174	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCACGCCTGGCCTTTTTT	7003	False	NA	-4	True	AATAAA	-19	NA	142101454	141945350	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_141948531_141950656_141950773_141953055_141953177_141955090_141955272_141964890_141965054_141983577_141983763_142009703_142009741_142010057_142010231_142017883_142018303_142020166_142020210_142058494_142058647_142097473_142097612_142101346
transcript_37814.known	chr3	-	1196	8	FSM	ENSMUSG00000028273.16	ENSMUST00000196908.5	1196	8	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	69.1041804459183	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACAATTGGTGTGCTTTCC	7078	False	NA	NA	False	NA	NA	NA	142101379	142008981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_142009183_142009703_142009741_142010057_142010231_142017883_142018303_142020166_142020210_142058494_142058647_142097473_142097612_142101346
transcript_37815.known	chr3	+	4206	14	FSM	ENSMUSG00000040213.14	ENSMUST00000044392.11	4206	14	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	23.3184793520062	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTTTTGGTTATAGTG	NA	False	NA	NA	False	NA	NA	NA	142406840	142452631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_142406937_142412449_142412557_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
transcript_37821.nnic	chr3	+	1767	13	NNC	ENSMUSG00000040213.14	novel	734	7	NA	NA	-10369	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	24.2674622122344	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTCCGTGTTGTACTTTC	NA	False	NA	23	True	AATACA	-37	NA	142418506	142450099	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_142418803_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
transcript_37822.nnic	chr3	+	1884	13	NNC	ENSMUSG00000040213.14	novel	734	7	NA	NA	-10297	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_1	24.2674622122344	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATACCTCATCTGCAGCT	NA	False	NA	NA	False	NA	NA	NA	142418578	142450288	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_+_142418803_142424136_142424196_142426121_142426267_142428875_142429026_142431181_142431269_142431724_142431851_142431942_142432064_142435519_142435597_142436962_142437053_142440234_142440422_142443532_142443607_142443985_142444073_142449831
transcript_37826.known	chr3	+	1455	7	FSM	ENSMUSG00000028271.10	ENSMUST00000029938.10	1455	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	21.5129160170246	387	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTGTTATAGTATTAAT	NA	False	NA	8	True	AATAAA	-15	NA	142470805	142489367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_142471050_142477146_142477254_142483951_142484086_142485452_142485600_142485730_142485861_142487100_142487383_142488956
transcript_37829.known	chr3	-	1669	5	FSM	ENSMUSG00000028266.18	ENSMUST00000120539.8	1669	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	8.32165848854662	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGGTTTAAACGCTGCT	NA	False	NA	-1	True	AATAAA	-28	NA	143910981	143894290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_143895067_143899656_143899813_143900167_143900265_143907573_143907813_143910580
transcript_37833.known	chr3	+	1514	5	FSM	ENSMUSG00000037072.17	ENSMUST00000082437.11	1514	5	0	0	0	0	multi-exon	FALSE	canonical	3	1325	junction_1	27.3404462289846	1530	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTGCTTTGTCCTTTCGTG	NA	False	NA	28	True	AATAAA	-30	NA	144276186	144303441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_144276561_144283346_144283515_144296372_144296437_144300661_144300712_144302583
transcript_37836.known	chr3	-	3961	9	FSM	ENSMUSG00000037062.14	ENSMUST00000163279.6	3961	9	0	0	0	0	multi-exon	TRUE	canonical	3	282	junction_5	25.8444868395563	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAATT	NA	False	NA	NA	False	AAAACA	-20	NA	144426096	144394604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_144397294_144397660_144397890_144402614_144402716_144403138_144403229_144411273_144411367_144412358_144412493_144414993_144415123_144418347_144418490_144425742
transcript_37837.nnic	chr3	-	2815	6	NNC	ENSMUSG00000037033.10	novel	3361	14	NA	NA	19958	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_5	5.74804314527997	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGTATTTCCTTAATCT	NA	False	NA	NA	False	ATTAAA	-23	NA	144535160	144528383	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_144529296_144530971_144531209_144531662_144531831_144533058_144533330_144533672_144533898_144534158
transcript_37839.known	chr3	+	2425	16	FSM	ENSMUSG00000028256.17	ENSMUST00000106192.9	2425	16	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	23.1944437791084	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGCAAGTGTCTCGCTATA	NA	False	NA	NA	False	AATAAA	-43	NA	144824349	144859676	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_144824544_144829971_144830137_144831853_144831987_144832783_144832913_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
transcript_37844.known	chr3	+	2239	15	FSM	ENSMUSG00000028256.17	ENSMUST00000029920.15	2239	15	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	27.9021614260419	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAATAACAGTATAAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	144824380	144859650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_144824544_144829971_144830137_144831853_144831987_144833591_144833652_144833770_144833843_144834650_144834768_144838392_144838579_144841385_144841496_144842348_144842485_144845544_144845656_144850072_144850178_144854291_144854378_144854675_144854839_144856720_144856847_144859144
transcript_37854.known	chr3	+	1127	11	FSM	ENSMUSG00000074182.9	ENSMUST00000199033.5	1127	11	0	0	0	0	multi-exon	TRUE	canonical	3	509	junction_1	98.0487633782293	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGTGCATGTTACTGCC	NA	False	NA	49	True	ATTAAA	-23	NA	145281959	145309868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_145282049_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
transcript_37857.nic	chr3	+	1251	11	NIC	ENSMUSG00000074182.9	novel	1127	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_1	227.48013100049	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGTGCATGTTACTGCC	NA	False	NA	49	True	ATTAAA	-23	NA	145281960	145309868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_145282174_145282605_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
transcript_37864.known	chr3	+	2339	10	FSM	ENSMUSG00000074182.9	ENSMUST00000098534.9	2339	10	0	0	0	0	multi-exon	FALSE	canonical	3	657	junction_9	57.8243402122986	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGAACATGTGTTATGTG	NA	False	NA	NA	False	AATATA	-45	NA	145281986	145310550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_145282752_145283856_145283923_145284006_145284114_145284199_145284286_145288283_145288388_145298570_145298640_145300354_145300436_145301878_145301957_145306212_145306335_145309689
transcript_37865.known	chr3	-	2019	5	FSM	ENSMUSG00000028195.5	ENSMUST00000029846.5	2019	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	2.58602010819715	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGAATGTATGTTGTTT	NA	False	NA	NA	False	AATAAA	-16	NA	145355736	145352730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_145353724_145353951_145354167_145354287_145354633_145354976_145355191_145355484
transcript_37866.known	chr3	+	3764	6	FSM	ENSMUSG00000028194.16	ENSMUST00000029845.15	3764	6	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_5	17.0105849399719	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTAGTGTCTGTCTCGT	NA	False	NA	9	True	AATAAA	-18	NA	145464429	145600032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_145464920_145551459_145551560_145558005_145558080_145558911_145559032_145594838_145594983_145597196
transcript_37867.known	chr3	+	321	1	FSM	ENSMUSG00000105388.2	ENSMUST00000197973.2	321	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5882	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGATTTTGTTATGAAGAC	8301	False	NA	NA	False	NA	NA	NA	145584774	145585095	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_145584800_145585100
transcript_37869.known	chr3	+	1949	3	FSM	ENSMUSG00000028191.12	ENSMUST00000029842.9	1949	3	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_2	11.5	338	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAATATTTCAGAG	NA	False	NA	87	True	AATATA	-9	NA	145630016	145640111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_145630271_145636160_145636450_145638705
transcript_37870.known	chr3	+	514	4	FSM	ENSMUSG00000036873.14	ENSMUST00000152783.2	514	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	20.0388511535855	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCGGGCATCTAAGATTCG	NA	False	NA	NA	False	AAGAAA	-38	NA	145643944	145649565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_145644084_145644297_145644425_145644652_145644852_145649516
transcript_37871.known	chr3	+	1644	4	FSM	ENSMUSG00000036873.14	ENSMUST00000134575.8	1644	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	61.937244225282	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTAACTTAGCATCTTGT	NA	False	NA	3	True	ATTAAA	-17	NA	145643796	145650582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_145644084_145644297_145644425_145644652_145644852_145649551
transcript_37874.known	chr3	+	724	3	FSM	ENSMUSG00000036873.14	ENSMUST00000190472.2	724	3	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_2	94.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAGATGATCATGGAAATAA	NA	False	NA	-10	True	NA	NA	NA	145644039	145649997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_145644084_145644652_145644852_145649516
transcript_37876.known	chr3	+	1547	3	FSM	ENSMUSG00000036873.14	ENSMUST00000039571.14	1547	3	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_2	10.5	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTTAGCATCTTGTTT	NA	False	NA	5	True	ATTAAA	-19	NA	145643768	145650584	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_145644084_145644652_145644852_145649551
transcript_37879.known	chr3	+	2892	7	FSM	ENSMUSG00000028189.13	ENSMUST00000061937.13	2892	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	4.91313432432789	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGTGACTTATTTTGATC	5954	False	NA	NA	False	AATAAA	-15	NA	146156224	146171604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_146156386_146160101_146160241_146160702_146160912_146163090_146163263_146164497_146164596_146165433_146165596_146169653
transcript_37885.known	chr3	+	593	3	FSM	ENSMUSG00000068523.13	ENSMUST00000090031.12	593	3	0	0	0	0	multi-exon	FALSE	canonical	3	3573	junction_2	41.5	1474	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCTGGGTACTAATCTTT	NA	False	NA	26	True	AATAAA	-39	NA	146205561	146211327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_146205776_146209014_146209155_146211088
transcript_37888.known	chr3	-	1661	9	FSM	ENSMUSG00000028187.11	ENSMUST00000029838.11	1661	9	0	0	0	0	multi-exon	FALSE	canonical	3	514	junction_1	36.008462547018	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGCCTGTGTGAGCCCAAA	NA	False	NA	NA	False	NA	NA	NA	146227184	146211710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_146212331_146212826_146212954_146213268_146213451_146213896_146213980_146217896_146218051_146218570_146218667_146223480_146223562_146225141_146225199_146226923
transcript_37894.known	chr3	-	1978	5	FSM	ENSMUSG00000028187.11	ENSMUST00000199079.2	1978	5	0	0	0	0	multi-exon	FALSE	canonical	3	522	junction_4	35.3765459026175	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAACAAAAC	NA	False	NA	NA	False	AATACA	-16	NA	146227166	146216549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_146218051_146218570_146218667_146223480_146223562_146225141_146225199_146226923
transcript_37896.known	chr3	-	4347	10	FSM	ENSMUSG00000005034.16	ENSMUST00000102515.10	4347	10	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	11.8415464455544	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATTGAGTCTTCTGTCCG	2698	False	NA	NA	False	ATTAAA	-20	NA	146518715	146435328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_146438469_146443688_146443854_146451014_146451138_146452354_146452451_146453675_146453803_146456237_146456321_146457201_146457301_146461386_146461516_146463461_146463524_146518392
transcript_37897.known	chr3	-	537	1	FSM	ENSMUSG00000070343.4	ENSMUST00000084614.5	537	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6173	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTTGATCCAAAAAGCTAAT	NA	False	NA	NA	False	NA	NA	NA	146545102	146544565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_146544600_146545100
transcript_379.known	chr1	+	1581	9	FSM	ENSMUSG00000025925.15	ENSMUST00000027057.8	1581	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	336.315978656977	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGCCACCTAGCATTGA	NA	False	NA	51	True	TATAAA	-11	NA	15875887	15913694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_15876182_15877864_15877961_15883264_15883387_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
transcript_37900.known	chr3	-	885	1	FSM	ENSMUSG00000047676.7	ENSMUST00000057740.7	885	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGCTGTGCAGGTGCC	NA	False	NA	NA	False	NA	NA	NA	149779179	149778294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_149778300_149779200
transcript_37902.nnic	chr3	-	1463	6	NNC	ENSMUSG00000039131.16	novel	1596	6	NA	NA	300	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	12.1885191881541	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGCTTTGTGGGTATTTTTC	NA	False	NA	NA	False	CATAAA	-15	NA	151871087	151799477	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_151799933_151808255_151808338_151813577_151813685_151833672_151833854_151843209_151843396_151870635
transcript_37903.known	chr3	-	1596	6	FSM	ENSMUSG00000039131.16	ENSMUST00000046614.10	1596	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	6.40624695121879	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTGTGGGTATTTTTCTT	NA	False	NA	NA	False	CATAAA	-17	NA	151871867	151799475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_151799933_151808255_151808338_151813577_151813685_151833672_151833854_151843209_151843396_151871284
transcript_37918.nic	chr3	+	2450	20	NIC	ENSMUSG00000028034.16	novel	2526	20	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	1	416	junction_13	332.523108563197	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916070	151938408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151938031
transcript_37919.known	chr3	+	2552	20	FSM	ENSMUSG00000028034.16	ENSMUST00000200524.5	2552	20	0	0	0	0	multi-exon	FALSE	canonical	1	74	junction_19	393.500738277491	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTCGGTAAGTTGGATAT	NA	False	NA	26	True	AATAAA	-16	NA	151916118	151938409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151937891
transcript_37920.known	chr3	+	2374	20	FSM	ENSMUSG00000028034.16	ENSMUST00000196695.5	2374	20	0	0	0	0	multi-exon	FALSE	canonical	1	416	junction_13	300.522177130688	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916155	151938408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
transcript_37924.nic	chr3	+	2447	20	NIC	ENSMUSG00000028034.16	novel	6523	20	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	1	416	junction_13	305.324648979145	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916070	151938408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151938031
transcript_37926.known	chr3	+	6523	20	FSM	ENSMUSG00000028034.16	ENSMUST00000166984.8	6523	20	0	0	0	0	multi-exon	FALSE	canonical	1	416	junction_13	269.035426927065	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATGAGTGTTTGTGTCTT	NA	False	NA	11	True	AATAAA	-16	NA	151916058	151942463	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931855_151933807_151933883_151937513_151937660_151938031
transcript_37931.known	chr3	+	3163	16	FSM	ENSMUSG00000028034.16	ENSMUST00000198227.5	3163	16	0	0	0	0	multi-exon	FALSE	canonical	1	416	junction_13	270.598809227897	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAGAAAAATAAATAAAGC	NA	False	NA	NA	False	NA	NA	NA	151916128	151930503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922
transcript_37938.known	chr3	+	2526	20	FSM	ENSMUSG00000028034.16	ENSMUST00000196739.5	2526	20	0	0	0	0	multi-exon	FALSE	canonical	1	74	junction_19	415.06742768987	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTCGGTAAGTTGGATA	NA	False	NA	25	True	AATAAA	-15	NA	151916134	151938408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_151916338_151919613_151919705_151921228_151921268_151923045_151923086_151923468_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101_151926205_151926322_151926424_151926903_151927046_151927720_151927882_151928465_151928618_151928922_151929003_151931716_151931846_151933807_151933883_151937513_151937660_151937891
transcript_37939.known	chr3	+	1040	12	FSM	ENSMUSG00000028034.16	ENSMUST00000199202.5	1040	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	499.405894973101	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGGAAGAAATGGAGAAATGA	NA	False	NA	NA	False	NA	NA	NA	151916109	151926136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_151916338_151919613_151919705_151920461_151920525_151921228_151921268_151923045_151923086_151923471_151923522_151923612_151923685_151923849_151923908_151925320_151925484_151925569_151925669_151925772_151925875_151926101
transcript_37940.nic	chr3	-	1799	6	ISM	ENSMUSG00000054942.14	ENSMUST00000199334.5	4024	14	-112	38373	-88	11445	5prime_fragment	FALSE	canonical	3	188	junction_4	9.69535971483266	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGTCTCTTAACTGTGG	NA	False	NA	-2	True	NA	NA	NA	152046132	152025586	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_152026381_152027986_152028114_152039117_152039255_152040888_152041067_152043362_152043682_152045888
transcript_37942.nic	chr3	-	1076	3	ISM	ENSMUSG00000054942.14	ENSMUST00000199397.2	2842	4	-38	3438	-4	2648	5prime_fragment	FALSE	canonical	3	188	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGATATGTGTCAATAAAGT	NA	False	NA	NA	False	NA	NA	NA	152046048	152040469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_-_152041067_152043362_152043682_152045888
transcript_37943.known	chr3	-	4965	16	FSM	ENSMUSG00000054942.14	ENSMUST00000073089.13	4965	16	0	0	0	0	multi-exon	TRUE	canonical	3	131	junction_7	24.7194030852059	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTTGTTCTTAATGACT	NA	False	NA	-34	True	AATAAA	-13	NA	152046044	151979485	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_151982491_151984529_151984647_151989418_151989473_151990838_151990974_151993141_151993241_151994692_151994780_151996096_151996170_151996427_151996547_152002753_152002855_152023250_152023375_152026246_152026381_152027986_152028114_152039117_152039255_152040888_152041067_152043362_152043682_152045888
transcript_37944.known	chr3	+	4183	24	FSM	ENSMUSG00000025437.16	ENSMUST00000197748.5	4183	24	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_13	66.1683137664235	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGATTTTCTAACTCTAG	NA	False	NA	NA	False	AATAAA	-25	NA	152052125	152099254	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080527_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
transcript_37945.known	chr3	+	3886	24	FSM	ENSMUSG00000025437.16	ENSMUST00000117492.9	3886	24	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_13	62.1055263911158	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAACTGAATGTTGAATTT	NA	False	NA	NA	False	AATAAA	-17	NA	152052114	152098970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_152052277_152063476_152063609_152063782_152063837_152064272_152064336_152065919_152066073_152067536_152067640_152069614_152069685_152071850_152071965_152072377_152072457_152073872_152074288_152075913_152076055_152079022_152079136_152080256_152080427_152080551_152080623_152081878_152081913_152084480_152084527_152085072_152085254_152086150_152086278_152087351_152087522_152088547_152088630_152089752_152089862_152095377_152095481_152097286_152097356_152097845
transcript_37947.known	chr3	+	4197	14	FSM	ENSMUSG00000039068.17	ENSMUST00000089982.11	4197	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	76.161382688458	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGCTTGTTGTGGATTCC	NA	False	NA	20	True	AATAAA	-29	NA	152102320	152165114	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_152102399_152125651_152125778_152128254_152128409_152132913_152134470_152152435_152152575_152154415_152154564_152154652_152154766_152155281_152155354_152156246_152156349_152156939_152157036_152157627_152157781_152161456_152161592_152163505_152163607_152163890
transcript_3795.nic	chr10	-	1539	4	NIC	ENSMUSG00000061983.8	novel	584	6	NA	NA	28	0	intron_retention	FALSE	canonical	3	2594	junction_3	461.374757292449	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23663145	23661080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_23661172_23661473_23662779_23662891_23662943_23663053
transcript_37950.known	chr3	+	4737	11	FSM	ENSMUSG00000039047.18	ENSMUST00000159899.8	4737	11	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_8	39.6252444787411	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCTTGTGCAGTAAGCC	3957	False	NA	NA	False	NA	NA	NA	152419736	152494663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_152419865_152422698_152422753_152428121_152428214_152443822_152443959_152445765_152445878_152448125_152448223_152450081_152450200_152450350_152450462_152453237_152453411_152472075_152472161_152491032
transcript_37955.nnic	chr3	-	2477	4	NNC	ENSMUSG00000052544.10	novel	416	3	NA	NA	-134273	1899	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	51.1881062574327	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGCGTTGTTTTCTCTC	NA	False	NA	-4	True	AATAAA	-24	NA	153065693	152909103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_152911229_152912254_152912363_152931338_152931464_153065574
transcript_37956.nnic	chr3	-	2352	3	NNC	ENSMUSG00000052544.10	novel	416	3	NA	NA	-134273	1899	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_2	46	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGAGCGTTGTTTTCTCTC	NA	False	NA	-4	True	AATAAA	-24	NA	153065693	152909103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_152911229_152912254_152912363_153065574
transcript_37958.known	chr3	-	1399	10	FSM	ENSMUSG00000038975.15	ENSMUST00000198350.5	1399	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_9	303.195735987477	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTTGTGTATATAGCT	6182	False	NA	-4	True	AATAAA	-44	NA	153618564	153612927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618550
transcript_37959.nic	chr3	-	1501	10	NIC	ENSMUSG00000038975.15	novel	1399	10	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	357	junction_9	240.631627694519	304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6062	False	NA	-2	True	AATAAA	-15	NA	153618684	153612925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618570
transcript_37964.known	chr3	-	1775	10	FSM	ENSMUSG00000038975.15	ENSMUST00000196565.5	1775	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_9	304.412366517671	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTGTTGTGTATATAG	6116	False	NA	-6	True	AATAAA	-42	NA	153618630	153612929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618254
transcript_37965.nic	chr3	-	1442	10	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_9	287.574145028528	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6157	False	NA	-2	True	AATAAA	-15	NA	153618589	153612925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618550
transcript_37966.nic	chr3	-	1517	10	NIC	ENSMUSG00000038975.15	novel	1775	10	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	357	junction_9	217.717962306997	333	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6062	False	NA	-2	True	AATAAA	-15	NA	153618684	153612925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561_153617670_153618570
transcript_37988.nic	chr3	-	1347	9	NIC	ENSMUSG00000038975.15	novel	1381	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_8	331.806584285183	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6154	False	NA	-2	True	AATAAA	-15	NA	153618592	153612925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618550
transcript_37989.known	chr3	-	1381	9	FSM	ENSMUSG00000038975.15	ENSMUST00000089950.11	1381	9	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_5	268.62508724987	673	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGTATATAGCTTT	6100	False	NA	-2	True	AATAAA	-15	NA	153618646	153612925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_153613379_153613691_153613842_153614426_153614553_153614985_153615097_153615182_153615236_153615897_153616004_153616327_153616526_153617561_153617670_153618570
transcript_3799.known	chr10	-	1795	3	FSM	ENSMUSG00000061983.8	ENSMUST00000220171.2	1795	3	0	0	0	0	multi-exon	FALSE	canonical	3	2594	junction_2	565	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCTTGTTTGCTGGTATA	NA	False	NA	-4	True	AATAAA	-27	NA	23663100	23661081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_23662779_23662891_23662943_23663053
transcript_38.known	ERCC-00108	+	1005	1	FSM	ERCC-00108A	DQ668365	1005	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	236	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00108_+_0_1000
transcript_380.known	chr1	+	2268	10	FSM	ENSMUSG00000025925.15	ENSMUST00000188371.7	2268	10	0	0	0	0	multi-exon	FALSE	canonical	3	905	junction_7	69.1671798285292	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAAAGCTGGCATCTTGA	NA	False	NA	NA	False	AATAAA	-24	NA	15875869	15914276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_15876182_15877864_15877961_15883264_15883387_15886109_15886197_15889157_15889308_15889874_15889988_15901730_15901791_15903624_15903714_15908405_15908513_15913144
transcript_3802.known	chr10	-	864	2	FSM	ENSMUSG00000061983.8	ENSMUST00000217883.2	864	2	0	0	0	0	multi-exon	FALSE	canonical	3	2594	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGGAAATACCCTGAAAGT	NA	False	NA	NA	False	NA	NA	NA	23663077	23662102	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_23662943_23663053
transcript_38027.known	chr3	-	1271	9	FSM	ENSMUSG00000038975.15	ENSMUST00000196266.5	1271	9	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_3	203.564140690348	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTAGTCTTCTGAGTCCA	7028	False	NA	-29	True	AATAAA	-16	NA	153617718	153613090	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_153613379_153613691_153613842_153614426_153614537_153614985_153615097_153615182_153615236_153615700_153615799_153615897_153616004_153616327_153616526_153617561
transcript_38029.known	chr3	-	2047	12	FSM	ENSMUSG00000062908.13	ENSMUST00000072697.13	2047	12	0	0	0	0	multi-exon	TRUE	canonical	3	875	junction_11	59.2580851965116	1136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTCTGACTCTCCAGG	NA	False	NA	-6	True	AATAAA	-16	NA	153650269	153627993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_153628640_153631301_153631551_153635167_153635264_153635853_153635995_153638663_153638773_153641931_153642063_153643339_153643421_153644190_153644292_153644533_153644604_153644706_153644805_153647519_153647608_153650032
transcript_3803.known	chr10	-	494	5	FSM	ENSMUSG00000061983.8	ENSMUST00000220070.2	494	5	0	0	0	0	multi-exon	FALSE	canonical	3	3174	junction_1	596.623153674076	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTTCTCTTGTATTTCT	NA	False	NA	-18	True	AATAAA	-13	NA	23662987	23661095	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662661_23662779_23662891
transcript_38036.known	chr3	-	437	2	FSM	ENSMUSG00000062908.13	ENSMUST00000135724.2	437	2	0	0	0	0	multi-exon	FALSE	canonical	3	875	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGATTAACTGTAACATAC	161	False	NA	NA	False	AATAAA	-28	NA	153650100	153647238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_153647608_153650032
transcript_38037.known	chr3	+	1059	9	FSM	ENSMUSG00000028199.19	ENSMUST00000194876.6	1059	9	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	25.4447931805311	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTATCCATTGGAGA	NA	False	NA	NA	False	AATAGA	-28	NA	154302780	154327804	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_154302922_154310528_154310653_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
transcript_38039.nic	chr3	+	2091	9	NIC	ENSMUSG00000028199.19	novel	2507	9	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_2	62.745019722684	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTGTCTGTCTCGTGTG	NA	False	NA	18	True	AGTAAA	-18	NA	154302863	154328819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_154302922_154310528_154310753_154312015_154312169_154317046_154317211_154319458_154319511_154324096_154324247_154327117_154327226_154327315_154327412_154327733
transcript_3804.known	chr10	-	474	4	FSM	ENSMUSG00000061983.8	ENSMUST00000218142.2	474	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_3	1924.28809346903	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTTTGCTGGTATAA	NA	False	NA	-3	True	AATAAA	-28	NA	23662700	23661080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_23661172_23661473_23661576_23661799_23661903_23662522
transcript_38042.known	chr3	-	4490	6	FSM	ENSMUSG00000047583.10	ENSMUST00000052774.8	4490	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	5.35163526410386	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTATAAGCCTTAAAAGCAC	NA	False	NA	91	True	NA	NA	NA	154302732	154282067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_154285929_154293113_154293248_154296720_154296793_154299353_154299453_154300090_154300172_154302489
transcript_38044.known	chr3	-	3518	4	FSM	ENSMUSG00000053870.8	ENSMUST00000066568.6	3518	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	2.16024689946929	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGAAATTTTTGTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	154799040	154790554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_154793707_154795748_154795842_154797027_154797196_154798935
transcript_38047.known	chr3	+	2737	11	FSM	ENSMUSG00000028180.19	ENSMUST00000106057.8	2737	11	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_9	297.644569915193	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGCTCTGACTGAATGTT	NA	False	NA	3	True	AATAAA	-11	NA	157240024	157254013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157251711_157251787_157252311
transcript_38053.known	chr3	+	2924	10	FSM	ENSMUSG00000028180.19	ENSMUST00000106058.8	2924	10	0	0	0	0	multi-exon	TRUE	canonical	3	697	junction_8	81.8057017542553	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTTTTTTTTTGTCACTGT	NA	False	NA	37	True	AATAAA	-45	NA	157239796	157254047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_157240112_157241970_157242024_157242114_157242224_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157252311
transcript_38057.known	chr3	+	2542	9	FSM	ENSMUSG00000028180.19	ENSMUST00000184802.8	2542	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	274.019815661204	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATCAAGTGTTGTTTAT	NA	False	NA	11	True	AATAAA	-12	NA	157239995	157253973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_157240112_157241970_157242024_157243223_157243307_157246269_157246347_157246691_157246827_157247336_157247507_157248794_157248882_157250600_157250760_157252311
transcript_3806.nic	chr10	+	2788	14	NIC	ENSMUSG00000037455.17	novel	2837	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	40.4205700752365	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATTGTATTCATTCAAA	NA	False	NA	24	True	AATAAA	-17	NA	23672883	23703866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_23673082_23674643_23674784_23679655_23679752_23680085_23680160_23680935_23681044_23681790_23681939_23692190_23692328_23694957_23695060_23696711_23696804_23698820_23698917_23700583_23700659_23701844_23701939_23702040_23702094_23702491
transcript_38061.nnic	chr3	-	1821	13	NNC	ENSMUSG00000028179.13	novel	1815	12	NA	NA	-21	16	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	295.476545412472	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTGTTTCTGGGTTCT	NA	False	NA	0	True	AATAAA	-34	NA	157630735	157599868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr3_-_157599897_157599927_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
transcript_38069.known	chr3	-	1815	12	FSM	ENSMUSG00000028179.13	ENSMUST00000118539.2	1815	12	0	0	0	0	multi-exon	FALSE	canonical	3	948	junction_5	60.9754048777046	793	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGCCCTGATCCTACTTT	NA	False	NA	-16	True	AATAAA	-18	NA	157630714	157599884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_157600465_157602828_157602968_157610781_157610835_157611819_157611942_157612956_157613110_157614535_157614614_157616519_157616578_157619236_157619369_157624062_157624173_157625653_157625750_157626591_157626674_157630502
transcript_3808.known	chr10	+	2837	14	FSM	ENSMUSG00000037455.17	ENSMUST00000119597.8	2837	14	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_6	14.8148334428987	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCATTGTATTCATTCAAA	NA	False	NA	24	True	AATAAA	-17	NA	23672883	23703866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_23673082_23674643_23674784_23679655_23679752_23680085_23680160_23681790_23681939_23686686_23686844_23692190_23692328_23694957_23695060_23696711_23696804_23698820_23698917_23700583_23700659_23701844_23701939_23702040_23702094_23702491
transcript_38082.known	chr3	+	3903	13	FSM	ENSMUSG00000039988.15	ENSMUST00000040787.13	3903	13	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_4	30.2143959433615	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATGTGCCTATTAATCC	NA	False	NA	15	True	AATAAA	-23	NA	157653050	157713671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_157653594_157666620_157666663_157667914_157668020_157677868_157677955_157678636_157678683_157680864_157680932_157694276_157694422_157697317_157697450_157700233_157700396_157705293_157705374_157706710_157706810_157709345_157709447_157711376
transcript_38085.known	chr3	-	2654	12	FSM	ENSMUSG00000055436.19	ENSMUST00000072875.15	2654	12	0	0	0	0	multi-exon	TRUE	canonical	3	573	junction_1	36.7913482463625	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATGCTTCTGTAGAGCTG	NA	False	NA	-27	True	AATAAA	-17	NA	157737403	157716555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_157717841_157717946_157718086_157718416_157718513_157719588_157719679_157721958_157722091_157723446_157723529_157724948_157725077_157727012_157727063_157727596_157727690_157728477_157728588_157732361_157732496_157737088
transcript_38094.known	chr3	-	1570	1	FSM	ENSMUSG00000055436.19	ENSMUST00000199742.2	1570	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	157737391	157735821	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_-_157735800_157737400
transcript_38096.known	chr3	+	4142	15	FSM	ENSMUSG00000063052.10	ENSMUST00000072080.10	4142	15	0	0	0	0	multi-exon	FALSE	canonical	3	641	junction_2	81.4479926714224	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGTAGTGTGTTTGT	NA	False	NA	NA	False	AATAAA	-24	NA	157742298	157774124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_157742514_157746077_157746260_157747222_157747297_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
transcript_3810.known	chr10	+	3435	10	FSM	ENSMUSG00000019998.7	ENSMUST00000220041.2	3435	10	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_6	15.4632180063243	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTTTTAGAATTGCTCTG	NA	False	NA	NA	False	AATAAA	-20	NA	24025224	24066120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_24025307_24031132_24031283_24053063_24053134_24055014_24055109_24055823_24055962_24056760_24056814_24057415_24057513_24058666_24058740_24060884_24060968_24063525
transcript_38100.known	chr3	+	2701	15	FSM	ENSMUSG00000063052.10	ENSMUST00000150525.8	2701	15	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	284.951275820686	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGTATAGTGTTTTTGTT	NA	False	NA	29	True	AATAAA	-44	NA	157742338	157772726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_157742514_157746077_157746260_157747499_157747571_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
transcript_38102.nic	chr3	+	2670	14	NIC	ENSMUSG00000063052.10	novel	4142	15	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	146	junction_2	190.962278254048	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGTATAGTGTTTTTGTT	NA	False	NA	29	True	AATAAA	-44	NA	157742298	157772726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr3_+_157742514_157746077_157746260_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
transcript_38105.known	chr3	+	2450	13	FSM	ENSMUSG00000063052.10	ENSMUST00000156597.8	2450	13	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	215.046296694973	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGGTATAGTGTTTTTGTT	NA	False	NA	29	True	AATAAA	-44	NA	157742336	157772726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_157742514_157749197_157749328_157754037_157754162_157757333_157757477_157758400_157758574_157760217_157760306_157760422_157760469_157761354_157761464_157764306_157764415_157766874_157766986_157768285_157768364_157769320_157769507_157771749
transcript_38111.known	chr3	+	3323	12	FSM	ENSMUSG00000028175.16	ENSMUST00000120272.8	3323	12	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_11	13.4778667659976	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTTATTTTTTTCAATC	NA	False	NA	NA	False	AATAAA	-20	NA	159201069	159235592	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159228162_159228994_159229413_159229587_159232167_159232345_159233580_159233767_159234635
transcript_38114.known	chr3	+	1971	11	FSM	ENSMUSG00000028175.16	ENSMUST00000106041.3	1971	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_7	17.3262806164508	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTGCTTCTTTATTTAT	NA	False	NA	NA	False	AAAACA	-43	NA	159201094	159235096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141_159221264_159221650_159221782_159222539_159222588_159226466_159226608_159229413_159229587_159232167_159232345_159233580_159233767_159234635
transcript_38116.nic	chr3	+	810	4	ISM	ENSMUSG00000028175.16	ENSMUST00000106041.3	1971	11	-49	13726	-24	-13726	5prime_fragment	FALSE	canonical	3	57	junction_3	8.5764535535124	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTTAAATATGCATTATG	NA	False	NA	NA	False	AATAAA	-22	NA	159201045	159221370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr3_+_159201204_159204000_159204267_159219811_159219969_159221141
transcript_38117.known	chr3	+	2050	13	FSM	ENSMUSG00000028173.11	ENSMUST00000198878.2	2050	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_12	7.78888096369861	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTATTATTTCCGTTTAT	NA	False	NA	NA	False	NA	NA	NA	159545373	159644300	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_159545685_159578545_159578819_159602967_159603093_159607018_159607181_159612751_159612889_159615289_159615459_159616934_159617033_159617396_159617461_159619397_159619542_159620572_159620657_159629062_159629217_159639886_159640006_159644090
transcript_38118.known	chr3	+	3559	12	FSM	ENSMUSG00000028173.11	ENSMUST00000068952.10	3559	12	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_6	6.38697020736374	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAAATGGAGTGAGGTGTC	NA	False	NA	NA	False	AATAAA	-29	NA	159545308	159641659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr3_+_159545685_159578545_159578819_159602967_159603093_159607018_159607181_159612751_159612889_159615289_159615459_159616934_159617033_159617396_159617461_159619397_159619542_159620572_159620657_159629062_159629217_159639886
transcript_38122.known	chr4	-	2690	8	FSM	ENSMUSG00000028232.14	ENSMUST00000029891.12	2690	8	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	11.6233403467474	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAGAAAACTATTTTTGG	280	False	NA	NA	False	AATAAA	-14	NA	3574853	3549040	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_3550580_3551751_3551892_3554353_3554415_3560498_3560693_3564092_3564258_3569363_3569753_3570320_3570373_3574703
transcript_38125.known	chr4	+	4327	13	FSM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	0	0	0	0	multi-exon	FALSE	canonical	2	97	junction_11	33.5186515241887	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAATTTTGTTTTATTTTT	-18	True	NA	11	True	NA	NA	NA	3574874	3616619	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_3575130_3583424_3583490_3585030_3585189_3585451_3586266_3589146_3589265_3591227_3591315_3593459_3593638_3595356_3595658_3598513_3598664_3602146_3602291_3604698_3604916_3605822_3605902_3614858
transcript_38130.nic	chr4	+	546	4	ISM	ENSMUSG00000028233.7	ENSMUST00000052712.6	4327	13	-25	31125	-25	1563	5prime_fragment	FALSE	canonical	3	157	junction_3	13.1402688962847	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAAACACCAGAAGCGG	NA	False	NA	NA	False	AATAAA	-20	NA	3574849	3585494	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_3575130_3583424_3583490_3585030_3585189_3585451
transcript_38131.known	chr4	+	3387	13	FSM	ENSMUSG00000042228.15	ENSMUST00000103010.4	3387	13	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	11.3023473471468	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCATCTTGTCTTACTT	5	True	NA	NA	False	ACTAAA	-17	NA	3678126	3791612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_3678365_3738724_3738799_3742441_3742488_3743196_3743303_3745317_3745417_3745522_3745627_3746710_3746861_3748660_3748814_3756300_3756484_3758245_3758323_3780912_3781067_3782972_3783105_3789741
transcript_38133.known	chr4	+	3463	13	FSM	ENSMUSG00000042228.15	ENSMUST00000041377.13	3463	13	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	7.08823359911026	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCATCTTGTCTTACTTC	-7	True	NA	NA	False	ACTAAA	-18	NA	3678114	3791613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_3678365_3738724_3738862_3742441_3742488_3743196_3743303_3745317_3745417_3745522_3745627_3746710_3746861_3748660_3748814_3756300_3756484_3758245_3758323_3780912_3781067_3782972_3783105_3789741
transcript_38135.known	chr4	-	582	3	FSM	ENSMUSG00000028234.7	ENSMUST00000103009.5	582	3	0	0	0	0	multi-exon	FALSE	canonical	3	6653	junction_2	831.5	128	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTTGCTGGCTTTTGTT	110	False	NA	-40	True	AATAAA	-15	NA	3835488	3834472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_3834684_3834935_3835010_3835191
transcript_38136.known	chr4	-	1449	1	FSM	ENSMUSG00000078365.6	ENSMUST00000105158.2	1449	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAAGTGCTTTTCCTAA	3131	False	NA	NA	False	AATAAA	-17	NA	3872105	3870656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_3870700_3872100
transcript_38141.known	chr4	+	711	6	FSM	ENSMUSG00000042198.13	ENSMUST00000120732.8	711	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	192.067279878693	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGGGGTTTTTTTTTG	-5	True	NA	30	True	ATTAAA	-23	NA	3938913	3943528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720_3942820_3942987_3943027_3943387
transcript_38142.known	chr4	+	524	5	FSM	ENSMUSG00000042198.13	ENSMUST00000108386.8	524	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	133.401649165218	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGTTTTGGGGTTTTT	NA	False	NA	25	True	ATTAAA	-18	NA	3938887	3943523	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_3938963_3939378_3939527_3941245_3941312_3942720_3942820_3943387
transcript_38143.known	chr4	+	426	5	FSM	ENSMUSG00000042198.13	ENSMUST00000149544.8	426	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	158.419537936455	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCAAAAGATGCCCTACTGA	NA	False	NA	-26	True	NA	NA	NA	3938889	3943472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_3938963_3939423_3939527_3941245_3941312_3942720_3942820_3943387
transcript_38145.known	chr4	+	672	5	FSM	ENSMUSG00000042198.13	ENSMUST00000041122.11	672	5	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_1	68.1762421962372	305	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGGGGTTTTTTTTTG	-5	True	NA	30	True	ATTAAA	-23	NA	3938913	3943528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720_3942820_3943387
transcript_38147.known	chr4	+	620	5	FSM	ENSMUSG00000042198.13	ENSMUST00000121651.8	620	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	167.916645988419	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAACATGTTTTGGGGTTT	-5	True	NA	23	True	ATTAAA	-16	NA	3938913	3943521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_3939132_3939423_3939527_3941245_3941312_3942720_3942820_3943387
transcript_38150.known	chr4	+	548	4	FSM	ENSMUSG00000042198.13	ENSMUST00000121210.8	548	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	176.426251510999	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTGAGCACTGGATCCAG	-5	True	NA	NA	False	CATAAA	-4	NA	3938913	3943050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_3938963_3939423_3939527_3941245_3941312_3942720
transcript_38152.nic	chr4	+	1307	4	ISM	ENSMUSG00000042198.13	ENSMUST00000041122.11	672	5	-69	2	-43	0	intron_retention	FALSE	canonical	3	280	junction_1	77.5857948052062	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTTTTGGGGTTTTTTTT	NA	False	NA	28	True	ATTAAA	-21	NA	3938844	3943526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_3939132_3939378_3939527_3941245_3941312_3942720
transcript_38157.known	chr4	+	889	4	FSM	ENSMUSG00000042198.13	ENSMUST00000119307.8	889	4	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_3	14.7271480229163	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTGTTTCTATAACTTGA	1	True	NA	6	True	NA	NA	NA	3938919	3943504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_3939527_3941245_3941312_3942720_3942820_3943387
transcript_38158.known	chr4	-	504	1	FSM	ENSMUSG00000068240.6	ENSMUST00000089430.6	504	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2077	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTTATCCAAGGCTACATC	6	True	NA	NA	False	AATAAA	-41	NA	3973595	3973091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_3973100_3973600
transcript_3816.known	chr10	+	2398	5	FSM	ENSMUSG00000019997.12	ENSMUST00000020171.12	2398	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	4.81534007106456	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAAGGCTTGGCTGTTCAT	NA	False	NA	5	True	AATAAA	-21	NA	24471339	24474576	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_24471687_24471773_24471997_24472244_24472497_24472629_24472842_24473212
transcript_38160.known	chr4	+	618	4	FSM	ENSMUSG00000049119.15	ENSMUST00000124256.8	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	25.9272486435067	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAACGGCCTGGAAGGGGA	-17	True	NA	NA	False	ATTAAA	-31	NA	5644089	5798382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_5644411_5678902_5678999_5729570_5729658_5798268
transcript_38161.known	chr4	+	3210	3	FSM	ENSMUSG00000049119.15	ENSMUST00000054857.13	3210	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	17	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGCTGATTTCTTTGTC	14	True	NA	12	True	AATAAA	-21	NA	5644120	5801101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_5644411_5729570_5729658_5798268
transcript_38165.nnic	chr4	+	1611	9	NNC	ENSMUSG00000028243.6	novel	6642	8	NA	NA	-10	-5125	at_least_one_novel_splicesite	TRUE	canonical	3	6	junction_3	55.7808210767823	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTTGTCCTTGTGTTT	NA	False	NA	NA	False	TTTAAA	-20	NA	6191087	6216563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_6191214_6196410_6196515_6198000_6198085_6202291_6202443_6203776_6203861_6204563_6204674_6208805_6208944_6214638_6214801_6215911
transcript_38169.known	chr4	+	6642	8	FSM	ENSMUSG00000028243.6	ENSMUST00000029907.6	6642	8	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	16.4614577676685	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCGTGCCTCAGTGTGAC	-10	True	NA	22	True	AATAAA	-24	NA	6191097	6221688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_6191214_6196410_6196515_6202291_6202443_6203776_6203861_6204563_6204674_6208805_6208944_6214638_6214801_6215911
transcript_38174.known	chr4	+	2086	9	FSM	ENSMUSG00000028249.16	ENSMUST00000103008.12	2086	9	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	110.946425697271	344	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCGTCTGTCTGTGCCTG	-5	True	NA	13	True	ATTAAA	-18	NA	6365676	6395655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_6365760_6377076_6377143_6378965_6379048_6380989_6381100_6385028_6385188_6386532_6386709_6392945_6393118_6393636_6393729_6394509
transcript_38175.known	chr4	-	3853	9	FSM	ENSMUSG00000041261.10	ENSMUST00000066674.8	3853	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	2.31503239718152	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATGTTGCTTTGATGATG	-1	True	NA	NA	False	AATAAA	-23	NA	8239041	8143361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_8146217_8169595_8169766_8183252_8183366_8184583_8184633_8185575_8185639_8189296_8189393_8221549_8221675_8237918_8238111_8238851
transcript_38179.known	chr4	+	2133	8	FSM	ENSMUSG00000047187.10	ENSMUST00000060232.8	2133	8	0	0	0	0	multi-exon	FALSE	canonical	3	1070	junction_6	76.6414924655499	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTAATGGCTGCCTTT	-17	True	NA	86	True	NA	NA	NA	8535643	8607778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_8535909_8561151_8561224_8572525_8572594_8577954_8578038_8578470_8578564_8582381_8582494_8604373_8604443_8606407
transcript_38181.known	chr4	-	6694	24	FSM	ENSMUSG00000028207.19	ENSMUST00000078139.13	6694	24	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_21	108.084473020543	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAATGTTTTGTGTTTT	NA	False	NA	NA	False	AATAAA	-30	NA	9669162	9449078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_9453446_9474897_9475032_9475389_9475482_9484471_9484608_9508626_9508765_9514588_9514679_9517635_9517735_9529885_9530023_9531914_9532066_9537678_9537766_9542224_9542311_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
transcript_38184.known	chr4	-	2884	14	FSM	ENSMUSG00000028207.19	ENSMUST00000084915.11	2884	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	124.875606744325	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAGATTGTCATTATTTT	NA	False	NA	-4	True	AATAAA	-17	NA	9669162	9575266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_9576974_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9598732_9598781_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
transcript_38185.known	chr4	-	2836	13	FSM	ENSMUSG00000028207.19	ENSMUST00000108337.8	2836	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	142.503411265212	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTAGATTGTCATTATTTT	NA	False	NA	-4	True	AATAAA	-17	NA	9669162	9575266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_9576974_9583811_9583857_9594662_9594699_9595376_9595416_9598268_9598302_9601306_9601364_9602468_9602502_9604515_9604630_9607796_9607872_9610842_9610939_9635900_9635970_9639197_9639348_9668780
transcript_38187.known	chr4	+	636	1	FSM	ENSMUSG00000066315.10	ENSMUST00000120234.2	636	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	825	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTGGAGAGTTGCA	20	False	NA	NA	False	AAAAAG	-44	NA	10848419	10849055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_10848400_10849100
transcript_38188.known	chr4	+	2116	6	FSM	ENSMUSG00000059482.16	ENSMUST00000080517.14	2116	6	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_4	10.0079968025574	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATGTCTCTGTGCAA	NA	False	NA	11	True	AATAAA	-15	NA	10874497	10899421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_10874773_10879522_10879611_10881800_10881869_10882406_10882473_10893262_10893359_10897898
transcript_3819.known	chr10	+	5098	30	FSM	ENSMUSG00000019984.17	ENSMUST00000092646.13	5098	30	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_10	16.8422067632588	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCTACAGCCTGGAGACT	NA	False	NA	NA	False	AATAAA	-26	NA	24745883	24789579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_24746045_24746351_24746384_24746561_24746650_24749370_24749496_24750467_24750580_24751493_24751593_24752837_24752940_24754286_24754357_24755570_24755684_24758451_24758548_24759101_24759120_24764297_24764499_24767016_24767161_24768411_24768558_24769512_24769759_24771603_24771747_24773082_24773258_24774307_24774472_24776593_24776719_24777900_24778107_24778190_24778372_24779558_24779730_24780158_24780376_24781719_24781957_24783079_24783246_24783832_24783906_24784530_24784746_24785695_24785817_24786631_24786764_24788560
transcript_38192.known	chr4	-	2977	2	FSM	ENSMUSG00000049969.4	ENSMUST00000054776.4	2977	2	0	0	0	0	multi-exon	FALSE	canonical	3	844	junction_1	0	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGTGTTTTTATATTG	NA	False	NA	-1	True	AATAAA	-17	NA	11007676	10988661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_10991355_11007392
transcript_38194.known	chr4	-	1082	9	FSM	ENSMUSG00000050323.15	ENSMUST00000058183.9	1082	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	119.468549731718	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGTGGTCTGAGTTTT	-19	True	NA	-3	True	TTTAAA	-3	NA	11076204	11051044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11066650_11066708_11070199_11070323_11073143_11073244_11075979
transcript_38196.nic	chr4	-	1026	8	NIC	ENSMUSG00000050323.15	novel	1082	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	146.340531024075	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGTGTGGTCTGAGTTTT	-20	True	NA	-3	True	TTTAAA	-3	NA	11076205	11051044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_11051226_11053431_11053489_11059011_11059114_11060860_11060995_11062049_11062153_11070199_11070323_11073143_11073244_11075979
transcript_38197.known	chr4	+	5432	5	FSM	ENSMUSG00000028211.12	ENSMUST00000132010.8	5432	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_4	77.6997425993163	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGGAGGATTCTTTTAT	8	True	NA	16	True	AATAAA	-17	NA	11156440	11174379	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_11156548_11164310_11164570_11165089_11165448_11167896_11167935_11169709
transcript_38199.known	chr4	+	5404	4	FSM	ENSMUSG00000028211.12	ENSMUST00000029865.4	5404	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	56.8409085860605	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTGGAGGATTCTTTTAT	-2	True	NA	16	True	AATAAA	-17	NA	11156430	11174379	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_11156548_11164310_11164570_11165089_11165448_11169709
transcript_3820.known	chr10	+	4798	29	FSM	ENSMUSG00000019984.17	ENSMUST00000020159.15	4798	29	0	0	0	0	multi-exon	FALSE	canonical	2	39	junction_7	9.84419439392103	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTGACTGCTTTGTAAC	NA	False	NA	13	True	AATAAA	-20	NA	24745944	24789358	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_24746045_24746351_24746384_24746561_24746650_24749370_24749496_24750467_24750580_24751493_24751593_24752837_24752940_24754286_24754357_24755570_24755684_24758451_24758548_24764297_24764499_24767016_24767161_24768411_24768558_24769512_24769759_24771603_24771747_24773082_24773258_24774307_24774472_24776593_24776719_24777900_24778107_24778190_24778372_24779558_24779730_24780158_24780376_24781719_24781957_24783079_24783246_24783832_24783906_24784530_24784746_24785695_24785817_24786631_24786764_24788560
transcript_38200.known	chr4	-	3220	27	FSM	ENSMUSG00000040738.11	ENSMUST00000108319.9	3220	27	0	0	0	0	multi-exon	TRUE	canonical	3	373	junction_22	31.9212464720813	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATATGTACAATTTAGTGGT	-1	True	NA	-14	True	ATTAAA	-20	NA	11254258	11204382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_11204584_11208825_11208870_11209211_11209277_11209391_11209466_11211881_11211933_11213705_11213810_11216456_11216576_11218611_11218674_11218768_11218826_11219892_11219927_11221112_11221298_11223765_11223888_11225601_11225804_11227119_11227231_11228850_11228985_11230332_11230509_11231652_11231724_11234570_11234713_11235509_11235611_11239306_11239463_11241580_11241689_11245723_11245907_11246094_11246147_11247831_11247904_11248170_11248312_11252775_11252951_11253980
transcript_38201.known	chr4	+	2908	12	FSM	ENSMUSG00000028212.17	ENSMUST00000108324.4	2908	12	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	27.8285779741998	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGAAAAAAATGGCATCAC	309	False	NA	NA	False	NA	NA	NA	11191729	11204682	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_11191816_11192680_11192718_11192814_11192912_11192992_11193047_11193925_11194078_11195019_11195156_11197152_11197300_11198728_11198825_11199296_11199432_11201304_11201417_11202189_11202348_11202984
transcript_38204.known	chr4	-	6754	19	FSM	ENSMUSG00000045205.17	ENSMUST00000084892.12	6754	19	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_13	8.17176711475418	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAACTCGTACTTGATCTT	-10	True	NA	-9	True	AATAAA	-24	NA	11322137	11261314	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_11265943_11267612_11267772_11273006_11273140_11276863_11276947_11277928_11277986_11281003_11281125_11285053_11285174_11287474_11287634_11289669_11289744_11290190_11290290_11290390_11290523_11292553_11292689_11295935_11296060_11303311_11303458_11303946_11304069_11304299_11304391_11309365_11309491_11317072_11317181_11321999
transcript_38206.nnic	chr4	+	2819	15	NNC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_12	83.7823955011932	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	NA	False	NA	19	True	AGTAAA	-16	NA	11558897	11615805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610441_11612371_11612439_11612617_11612819_11615442
transcript_38207.known	chr4	+	2870	15	FSM	ENSMUSG00000078773.12	ENSMUST00000070755.13	2870	15	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_12	66.7496464868725	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	25	True	NA	19	True	AGTAAA	-16	NA	11558971	11615805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610566_11612371_11612439_11612617_11612819_11615442
transcript_38209.nnic	chr4	+	2743	14	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	-24	0	combination_of_known_splicesites	FALSE	canonical	3	84	junction_13	71.5348220745028	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	NA	False	NA	19	True	AGTAAA	-16	NA	11558897	11615805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11610303_11610566_11612371_11612439_11615442
transcript_38215.nnic	chr4	+	2481	13	NIC	ENSMUSG00000078773.12	novel	2870	15	NA	NA	-24	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_11	86.901724506607	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTGTGTGTATCCTTAA	NA	False	NA	19	True	AGTAAA	-16	NA	11558897	11615805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550_11601759_11604865_11605006_11606045_11606337_11609293_11609470_11612371_11612439_11615442
transcript_38219.nic	chr4	+	1915	8	ISM	ENSMUSG00000078773.12	ENSMUST00000070755.13	2870	15	-74	13576	-24	-3915	5prime_fragment	FALSE	canonical	3	154	junction_7	24.0458745241809	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTATTTCTGTGTTGTGTGT	NA	False	NA	NA	False	TTTAAA	-15	NA	11558897	11602229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_11559014_11563326_11563478_11569820_11569933_11593620_11593816_11595666_11595940_11597831_11597995_11599675_11599902_11601550
transcript_38223.nnic	chr4	+	2533	5	NNC	ENSMUSG00000078773.12	novel	2403	4	NA	NA	-24	6	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_4	91.7261549395809	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATATTGAATTTATGTTATG	NA	False	NA	NA	False	AATAAA	-15	NA	11558897	11585750	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_11559014_11563326_11563478_11569820_11569933_11578633_11578714_11583676
transcript_38224.known	chr4	+	652	4	FSM	ENSMUSG00000078773.12	ENSMUST00000108306.9	652	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	82.7056359761668	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTACGTACGATACAGGTA	2	True	NA	NA	False	GATAAA	-13	NA	11558948	11578957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11578633
transcript_38225.known	chr4	+	2403	4	FSM	ENSMUSG00000078773.12	ENSMUST00000095145.12	2403	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	85.9883713068226	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGTATATATTGAATTTAT	-5	True	NA	NA	False	AATAAA	-9	NA	11558941	11585744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_11559014_11563326_11563478_11569820_11569933_11583676
transcript_38226.known	chr4	+	2006	5	FSM	ENSMUSG00000028214.14	ENSMUST00000108304.9	2006	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.17944947177034	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTCTGCTATCCTCCATG	10	False	NA	NA	False	AATAAA	-26	NA	11704456	11714752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_11704567_11705904_11706242_11711138_11711216_11711969_11712175_11713475
transcript_38227.known	chr4	-	2588	3	FSM	ENSMUSG00000049225.15	ENSMUST00000108299.2	2588	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	3	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACTGCTATGTTTAATTC	-13	True	NA	NA	False	AATAAA	-20	NA	11966427	11959806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_11962234_11965613_11965649_11966301
transcript_38229.known	chr4	-	4201	2	FSM	ENSMUSG00000049225.15	ENSMUST00000108297.3	4201	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGTGAAATCTGGCTGTC	-38	True	NA	-7	True	AATAAA	-21	NA	11966452	11958183	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_11962234_11966301
transcript_38230.known	chr4	+	535	2	FSM	ENSMUSG00000085614.2	ENSMUST00000154194.2	535	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTGCTTGCTTCAGAACAA	662	False	NA	NA	False	AATAAA	-15	NA	11966564	11994280	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_11966684_11993864
transcript_38231.known	chr4	-	3456	28	FSM	ENSMUSG00000049488.15	ENSMUST00000050686.10	3456	28	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_10	5.81280927905584	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTTTGCGTTATTGAT	4	True	NA	NA	False	AATAAA	-32	NA	12087957	12039354	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_12039893_12040634_12040778_12043464_12043568_12045794_12045900_12046002_12046120_12047197_12047315_12047809_12047891_12051387_12051529_12053446_12053587_12053674_12053775_12054745_12054833_12055030_12055130_12057315_12057415_12058520_12058578_12061754_12061861_12063034_12063159_12063673_12063831_12068867_12068934_12069413_12069492_12070236_12070346_12070448_12070604_12073893_12073957_12075454_12075530_12075622_12075693_12077335_12077436_12079874_12079969_12085911_12086001_12087714
transcript_38234.nnic	chr4	+	3416	4	NNC	ENSMUSG00000052137.12	novel	3327	4	NA	NA	-105	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_1	14.4299072146089	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAATTGCTCTTGA	NA	False	NA	-16	True	NA	NA	NA	12089333	12096243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_12089506_12089662_12089728_12092522_12092573_12093114
transcript_38236.known	chr4	+	3327	4	FSM	ENSMUSG00000052137.12	ENSMUST00000063839.6	3327	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	21.6692306175267	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATAAAATTGCTCTTGA	56	False	NA	-16	True	NA	NA	NA	12089440	12096243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_12089524_12089662_12089728_12092522_12092573_12093114
transcript_38238.known	chr4	+	3147	3	FSM	ENSMUSG00000052137.12	ENSMUST00000095143.9	3147	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	14.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGAGATTCCTGAATTCAT	54	False	NA	NA	False	TTTAAA	-25	NA	12089438	12095922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_12089728_12092522_12092573_12093114
transcript_38241.nnic	chr4	+	2989	4	NNC	ENSMUSG00000046667.15	novel	3069	3	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	25.0377492776186	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTGGAAGAGAATTTCCT	2	False	NA	NA	False	AATAAA	-18	NA	12140302	12146731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_12140447_12140540_12140606_12143409_12143460_12144001
transcript_38242.known	chr4	+	3069	3	FSM	ENSMUSG00000046667.15	ENSMUST00000069128.8	3069	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	12.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGTGGAAGAGAATTTCCT	16	False	NA	NA	False	AATAAA	-18	NA	12140316	12146731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_12140606_12143409_12143460_12144001
transcript_38243.known	chr4	+	2949	4	FSM	ENSMUSG00000046667.15	ENSMUST00000050069.9	2949	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	18.4089350286454	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAATTAAAAATAAAAAATAT	-1	True	NA	NA	False	TATAAA	-20	NA	12140266	12146700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_12140402_12140540_12140606_12143409_12143460_12144001
transcript_38245.nnic	chr4	-	1177	9	NNC	ENSMUSG00000028218.20	novel	648	7	NA	NA	0	52908	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	138.176913321293	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGATTACACAGTCTTTCT	126	False	NA	NA	False	ATTAAA	-36	NA	12171871	12100500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_12100753_12155648_12155769_12157650_12157765_12164087_12164193_12165765_12165772_12168222_12168325_12168964_12169034_12170983_12171219_12171697
transcript_38249.known	chr4	-	1639	9	FSM	ENSMUSG00000028218.20	ENSMUST00000108285.9	1639	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	143.668672646475	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCATCTGGTATGAAAATT	-18	True	NA	NA	False	AGTAAA	-41	NA	12172015	12153408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_12153979_12155648_12155769_12157650_12157765_12164087_12164193_12165765_12165772_12168222_12168325_12168964_12169034_12170983_12171219_12171697
transcript_38254.known	chr4	-	1292	8	FSM	ENSMUSG00000028218.20	ENSMUST00000087052.11	1292	8	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	133.555614037061	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTACATAGTCTTTCTTTC	2	True	NA	-42	True	ATTAAA	-39	NA	12171995	12153723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_12153979_12155648_12155769_12157650_12157765_12164087_12164193_12168228_12168325_12168964_12169034_12170983_12171219_12171697
transcript_3826.known	chr10	+	4115	18	FSM	ENSMUSG00000019978.17	ENSMUST00000218903.2	4115	18	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_1	40.1674694938122	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAAATGTGTCACTTCTCT	NA	False	NA	NA	False	AATAAA	-14	NA	25235753	25399411	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_25235880_25317470_25317956_25319639_25319853_25336689_25336795_25343993_25344037_25345093_25345170_25347316_25347536_25348973_25349062_25354906_25355060_25355565_25355664_25360105_25360279_25364848_25364992_25377721_25378286_25380034_25380158_25382072_25382172_25383674_25383756_25388870_25388980_25398194
transcript_38260.known	chr4	-	605	5	FSM	ENSMUSG00000028218.20	ENSMUST00000152219.2	605	5	0	0	0	0	multi-exon	FALSE	canonical	2	126	junction_1	112.85250329523	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTAGAGACAATGTAATTTT	263	False	NA	NA	False	NA	NA	NA	12171734	12165609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_12165772_12168222_12168325_12168964_12169034_12170983_12171219_12171697
transcript_38261.known	chr4	+	3545	5	FSM	ENSMUSG00000055963.13	ENSMUST00000183345.2	3545	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	1.87082869338697	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGAATTTAGCATTTTTG	-3	True	NA	NA	False	AATAAA	-26	NA	12906857	12983553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_12906939_12917915_12918066_12962944_12963024_12974729_12974816_12980404
transcript_38262.known	chr4	-	438	1	FSM	ENSMUSG00000083328.4	ENSMUST00000118781.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATCCCATGCACGGCTT	40	False	NA	NA	False	AATACA	-33	NA	13483192	13482754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_13482800_13483200
transcript_38263.known	chr4	-	2647	8	FSM	ENSMUSG00000040550.18	ENSMUST00000151012.3	2647	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	152.637492385169	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTGAAGTAATGTTATC	23	True	NA	-2	True	AATAAA	-12	NA	14826395	14810045	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_14811749_14812452_14812560_14815602_14815665_14818175_14818489_14819094_14819216_14822691_14822773_14825498_14825654_14826290
transcript_38264.known	chr4	-	3257	7	FSM	ENSMUSG00000040550.18	ENSMUST00000236953.2	3257	7	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_3	17.5752351019521	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATGTGTATATTCAAATT	-2	True	NA	0	True	AATAAA	-19	NA	14826587	14809506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_14811749_14812452_14812560_14815602_14815665_14818175_14818489_14822691_14822773_14825498_14825654_14826290
transcript_38269.known	chr4	+	2339	7	FSM	ENSMUSG00000028221.4	ENSMUST00000029875.4	2339	7	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_4	16.4688257693808	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TCAAAGAGAAAATGATAAAT	21	False	NA	-79	True	NA	NA	NA	14864075	14915176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_14864438_14886533_14886683_14892392_14892500_14893500_14893625_14902486_14902540_14912431_14912523_14913723
transcript_38273.known	chr4	-	4922	13	FSM	ENSMUSG00000040536.16	ENSMUST00000041606.14	4922	13	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	6.35249294896631	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAAATTTGTATTTATTCT	633	False	NA	NA	False	AATAAA	-24	NA	15149131	14952244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_14955922_14957825_14957918_14960007_14960086_14965905_14966019_14975132_14975187_14978154_14978232_14989157_14989280_15004968_15005106_15052619_15052718_15065323_15065350_15111193_15111303_15140224_15140250_15148817
transcript_38275.nic	chr4	-	795	5	ISM	ENSMUSG00000040536.16	ENSMUST00000108273.2	2135	14	552	97579	-111	58454	internal_fragment	FALSE	canonical	3	19	junction_2	1.4790199457749	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTTCATTTTTTATA	522	False	NA	NA	False	AATACA	-15	NA	15149242	15052507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_15052718_15065323_15065350_15111193_15111303_15140224_15140250_15148817
transcript_38278.known	chr4	+	876	6	FSM	ENSMUSG00000086587.8	ENSMUST00000136992.8	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	12.687001221723	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATGGTACAGAATTTTT	0	True	NA	6	True	TATAAA	-17	NA	14930660	14953030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_14930771_14936440_14936540_14938483_14938558_14942199_14942276_14947438_14947546_14952620
transcript_3828.known	chr10	+	3651	15	FSM	ENSMUSG00000039031.17	ENSMUST00000039557.9	3651	15	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_6	3.14934395500694	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTCCTATTTACTACTA	NA	False	NA	103	True	AATAAA	-20	NA	26648472	26794644	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_26648693_26721927_26722125_26725870_26726107_26730869_26730934_26736552_26736729_26745916_26746083_26748668_26748761_26753152_26753231_26754886_26755047_26756683_26756767_26763776_26763984_26765727_26765869_26788602_26788728_26792388_26792451_26793000
transcript_38280.known	chr4	-	2959	10	FSM	ENSMUSG00000028223.9	ENSMUST00000029877.9	2959	10	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_6	12.6207745648706	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATCTTGTAGAGGTTGCAT	NA	False	NA	NA	False	ATTAAA	-19	NA	15945507	15917239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_15919095_15919193_15919257_15919831_15919979_15922484_15922558_15924253_15924354_15929726_15929875_15930913_15931001_15931124_15931183_15932892_15933096_15945282
transcript_38282.known	chr4	+	2533	16	FSM	ENSMUSG00000028224.15	ENSMUST00000029879.15	2533	16	0	0	0	0	multi-exon	TRUE	canonical	3	165	junction_3	27.9629914152418	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTTGTGTGGTAACGT	-45	True	NA	9	True	AATAAA	-15	NA	15957924	15992589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_15958111_15962310_15962445_15963771_15963921_15964246_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034_15976165_15979140_15979414_15981306_15981749_15983953_15984023_15986508_15986665_15989001_15989116_15991181_15991232_15992433
transcript_38284.nnic	chr4	+	2444	16	NNC	ENSMUSG00000028224.15	novel	2533	16	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_3	53.2213825032341	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTTGTGTGGTAACGT	-38	True	NA	9	True	AATAAA	-15	NA	15957931	15992589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_15958111_15962310_15962445_15963771_15963921_15964328_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034_15976165_15979140_15979414_15981306_15981749_15983953_15984023_15986508_15986665_15989001_15989116_15991181_15991232_15992433
transcript_38287.known	chr4	+	1752	11	FSM	ENSMUSG00000028224.15	ENSMUST00000149069.2	1752	11	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	24.0407986556187	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGATGTTGATTTAGCT	-3	True	NA	NA	False	NA	NA	NA	15957966	15981554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_15958111_15962310_15962445_15963771_15963921_15964246_15964407_15965133_15965238_15969340_15969459_15970720_15970915_15971765_15971864_15976034_15976165_15979140_15979414_15981306
transcript_38289.known	chr4	-	2658	6	FSM	ENSMUSG00000041153.10	ENSMUST00000037198.10	2658	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	19.0305018325844	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTGTGCCCTTTCCCATT	0	True	NA	NA	False	ATTAAA	-18	NA	16013888	15997120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_15999001_16001929_16002022_16005356_16005549_16006356_16006494_16008600_16008756_16013686
transcript_3829.known	chr10	+	6177	32	FSM	ENSMUSG00000019889.11	ENSMUST00000166468.2	6177	32	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	60.4652272341261	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATATGAGAATGTCACAAAA	NA	False	NA	94	True	AATAAA	-18	NA	27950815	28473393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_27951174_28082129_28082253_28139496_28139769_28210471_28210554_28212417_28212534_28230600_28230776_28259426_28259721_28341753_28342057_28348943_28349054_28351080_28351283_28359183_28359290_28368909_28369184_28372904_28372942_28427613_28427753_28436000_28436162_28438102_28438139_28442490_28442676_28444322_28444411_28445892_28445970_28446169_28446188_28449363_28449401_28450814_28450913_28451585_28451703_28456388_28456544_28461555_28461692_28461918_28462069_28462903_28463078_28464923_28465056_28465254_28465381_28467880_28468045_28468765_28468902_28471797
transcript_38290.nic	chr4	-	2489	6	NIC	ENSMUSG00000041153.10	novel	2658	6	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	32.8852550545073	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCTTGTGTGAACACTG	-9	True	NA	-4	True	AATAAA	-17	NA	16013854	15997226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_15999001_16001929_16002022_16005385_16005549_16006356_16006494_16008600_16008756_16013686
transcript_38294.nic	chr4	-	1802	6	NIC	ENSMUSG00000041153.10	novel	2658	6	NA	NA	-33	-687	combination_of_known_junctions	FALSE	canonical	3	39	junction_2	32.8852550545073	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCAGTGTATTGGCTTG	-9	True	NA	-4	True	ATTAAA	-17	NA	16013854	15997913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_15999001_16001929_16002022_16005385_16005549_16006356_16006494_16008600_16008756_16013686
transcript_38295.known	chr4	-	5648	16	FSM	ENSMUSG00000028228.6	ENSMUST00000029885.5	5648	16	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_5	15.541199724889	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATAGCTGTGTTTGGTTT	-13	True	NA	-6	True	AATAAA	-15	NA	19570108	19519253	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_19523295_19525002_19525240_19526283_19526418_19528059_19528112_19528187_19528243_19532398_19532533_19533054_19533115_19535211_19535299_19536526_19536626_19540740_19540831_19543253_19543338_19550587_19550660_19552243_19552319_19553717_19553898_19555361_19555502_19570000
transcript_38297.known	chr4	-	6440	25	FSM	ENSMUSG00000041058.16	ENSMUST00000108246.9	6440	25	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_17	21.4877225927324	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAAACTATTGCTTGAAC	-30	True	NA	NA	False	NA	NA	NA	19708993	19608302	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_19611814_19618284_19618358_19619155_19619253_19621927_19622033_19623101_19623223_19627632_19627774_19627871_19628006_19631045_19631206_19635253_19635343_19638604_19638677_19638774_19638851_19639951_19640081_19640194_19640280_19640360_19640416_19641733_19641909_19643365_19643462_19650115_19650441_19659562_19659748_19661965_19662033_19662121_19662260_19672418_19672544_19673155_19673295_19678344_19678436_19687790_19687887_19708838
transcript_38299.known	chr4	+	1734	10	FSM	ENSMUSG00000028229.12	ENSMUST00000029888.4	1734	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_9	10.5736686696625	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTTGGATTTAAGGTATT	29	True	NA	NA	False	CATAAA	-17	NA	19575206	19606932	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_19575328_19580389_19580508_19586775_19586864_19588525_19588686_19595069_19595160_19599613_19599670_19601355_19601444_19602642_19602674_19605402_19605537_19606084
transcript_3830.known	chr10	+	2364	1	FSM	ENSMUSG00000019889.11	ENSMUST00000219107.2	2364	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGCATTG	NA	False	NA	NA	False	ATTAAA	-19	NA	27950900	27953264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_27950900_27953300
transcript_38302.known	chr4	+	2862	5	FSM	ENSMUSG00000073988.14	ENSMUST00000121491.8	2862	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	15.2212844398888	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGTGTTTATATTTTTC	17	False	NA	21	True	AATAAA	-17	NA	20008006	20030470	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_20008347_20014630_20014785_20021191_20021386_20023784_20023896_20028407
transcript_38304.known	chr4	+	3053	5	FSM	ENSMUSG00000073988.14	ENSMUST00000098244.2	3053	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	18.1934053986603	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATTAAAATCTATTAAA	5	True	NA	NA	False	AGTAAA	-10	NA	20008427	20030785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_20008644_20014630_20014785_20021191_20021386_20023784_20023896_20028407
transcript_38308.known	chr4	+	1965	9	FSM	ENSMUSG00000073987.5	ENSMUST00000098242.4	1965	9	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_6	14.9080515158756	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACTGTTTTTGAAGATAA	-25	True	NA	NA	False	AATAAA	-20	NA	20042051	20066750	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_20042283_20046202_20046315_20049791_20049843_20052663_20052749_20054063_20054203_20057936_20058044_20058138_20058230_20063998_20064137_20065739
transcript_38309.known	chr4	+	6003	18	FSM	ENSMUSG00000040455.18	ENSMUST00000065111.15	6003	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	7.72986837222362	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTAGTTCCCTGGCTTG	-8	True	NA	3	True	AATAAA	-16	NA	21776271	21837870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21817500_21817645_21824416_21825078_21826153_21826252_21830416_21830504_21832163_21832318_21834234
transcript_3831.known	chr10	+	1845	6	FSM	ENSMUSG00000019883.12	ENSMUST00000160399.8	1845	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	32.6643536596088	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTTTATGTCCATTCCAG	NA	False	NA	2	True	AATAGA	-13	NA	29189161	29221556	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_29189294_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
transcript_38310.known	chr4	+	5861	17	FSM	ENSMUSG00000040455.18	ENSMUST00000040429.12	5861	17	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_12	7.05226027596827	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTAGTTCCCTGGCTTGCT	-8	True	NA	5	True	AATAAA	-18	NA	21776271	21837872	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_21776318_21780340_21780451_21781735_21781909_21782882_21782987_21784692_21784794_21796785_21796929_21797294_21797391_21798604_21798736_21804225_21804314_21810741_21810824_21815306_21815399_21816881_21816939_21824416_21825078_21826153_21826252_21830416_21830504_21832163_21832318_21834234
transcript_38311.known	chr4	+	3484	13	FSM	ENSMUSG00000028252.21	ENSMUST00000065928.11	3484	13	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_12	125.983023547707	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTTTCTTTTTAATTT	-5	True	NA	NA	False	NA	NA	NA	21727700	21750546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482_21747577_21748136
transcript_38314.known	chr4	+	1406	12	FSM	ENSMUSG00000028252.21	ENSMUST00000108240.3	1406	12	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_11	64.4238290701982	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTAGTTTTCTGGATTTT	-5	True	NA	12	True	AATAAA	-14	NA	21727754	21747962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21747482
transcript_38316.known	chr4	+	3365	12	FSM	ENSMUSG00000028252.21	ENSMUST00000102997.8	3365	12	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_11	80.4513096421711	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGTTTCTTTTTAATTT	20	False	NA	NA	False	NA	NA	NA	21727725	21750546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21748136
transcript_38329.known	chr4	-	1588	4	FSM	ENSMUSG00000028251.6	ENSMUST00000029915.6	1588	4	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_1	27.288581250528	202	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGCATGTATTTCTTTAA	-17	True	NA	0	True	AATAAA	-24	NA	21767212	21757381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_21758476_21759369_21759530_21759622_21759794_21767049
transcript_38333.known	chr4	+	1453	12	FSM	ENSMUSG00000028252.21	ENSMUST00000120679.8	1453	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	132.289502216518	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGGTTCCTGACTCCTG	20	False	NA	NA	False	AATAAA	-19	NA	21727725	21759922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_21727916_21730396_21730504_21732217_21732303_21732488_21732559_21735416_21735469_21740591_21740648_21741954_21741991_21742612_21742705_21743246_21743315_21746349_21746430_21746655_21746775_21759424
transcript_38335.known	chr4	+	4545	12	FSM	ENSMUSG00000028248.16	ENSMUST00000029911.12	4545	12	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_11	60.0897400518935	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTGGCTATGATACATACA	5	False	NA	18	True	AATAAA	-18	NA	21847582	21876475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_21848140_21854346_21854446_21857179_21857369_21859083_21859308_21860819_21860992_21861986_21862178_21865876_21866015_21869515_21869616_21870351_21870406_21871437_21871609_21873585_21874673_21874912
transcript_3834.known	chr10	+	3856	6	FSM	ENSMUSG00000019883.12	ENSMUST00000020034.6	3856	6	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_5	6.04648658313239	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACATTTCCGTGTTCTTTTT	NA	False	NA	NA	False	NA	NA	NA	29189495	29223465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_29189730_29193502_29193719_29198270_29198414_29207814_29207868_29210186_29210268_29220336
transcript_38349.known	chr4	+	2651	7	FSM	ENSMUSG00000028247.3	ENSMUST00000029909.3	2651	7	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_5	29.1414176426306	468	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTGGCCATTGTGC	-10	True	NA	11	True	NA	NA	NA	21879672	21912162	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_21879797_21892808_21892936_21896554_21896708_21899057_21899158_21900263_21900507_21908482_21908643_21910418
transcript_38351.known	chr4	+	2546	9	FSM	ENSMUSG00000040410.15	ENSMUST00000039234.10	2546	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	14.7627063914446	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTTGTTAAGAATCTTT	NA	False	NA	NA	False	AATAAA	-44	NA	22357542	22434091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390676_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433566
transcript_38353.known	chr4	+	2570	10	FSM	ENSMUSG00000040410.15	ENSMUST00000184582.2	2570	10	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_8	25.9019995414816	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATTTTGCACATCTTTC	34	True	NA	NA	False	AATAAA	-28	NA	22357615	22434075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_22357682_22375660_22375771_22376495_22377078_22385906_22386253_22390676_22390922_22403531_22403746_22422716_22422789_22427149_22427463_22433145_22433259_22433566
transcript_38354.known	chr4	+	4478	24	FSM	ENSMUSG00000045751.17	ENSMUST00000108222.9	4478	24	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_15	74.8650203134992	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCTCTCTGTGAATATTTA	-16	True	NA	NA	False	ATTAAA	-23	NA	24496450	24602950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931_24503113_24505344_24505436_24507313_24507445_24508404_24508519_24517059_24517237_24521240_24521304_24529043_24529164_24532902_24533130_24535938_24536449_24574380_24574575_24578752_24578904_24580053_24580203_24581101_24581245_24586182_24586343_24588202_24588373_24591033_24591246_24596137_24596302_24598785_24598883_24600154_24600323_24602573
transcript_38356.nnic	chr4	+	1185	6	NNC	ENSMUSG00000045751.17	novel	1350	5	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	143.521426971724	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTCATTCTCGTTGAT	NA	False	NA	9	True	AATAAA	-18	NA	24496429	24503413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_24496635_24496831_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931
transcript_38357.nic	chr4	+	1143	6	NIC	ENSMUSG00000045751.17	novel	1350	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_1	154.538797717596	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTCATTCTCGTTGAT	-5	True	NA	9	True	AATAAA	-18	NA	24496461	24503413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_24496635_24496841_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931
transcript_38358.known	chr4	+	1350	5	FSM	ENSMUSG00000045751.17	ENSMUST00000138567.9	1350	5	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_3	29.9457843443781	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTCATTCTCGTTGAT	-5	True	NA	9	True	AATAAA	-18	NA	24496461	24503413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931
transcript_38360.known	chr4	+	3224	17	FSM	ENSMUSG00000045751.17	ENSMUST00000173079.8	3224	17	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_15	87.5590648862241	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAGTCATATCGTTAGTT	-16	True	NA	NA	False	AATAAA	-17	NA	24496450	24581338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_24497066_24497837_24497964_24500036_24500087_24502747_24502836_24502931_24503113_24505344_24505436_24507313_24507445_24508404_24508519_24517059_24517237_24521240_24521304_24529043_24529164_24532902_24533130_24535938_24536449_24574380_24574575_24578752_24578904_24580053_24580203_24581101
transcript_38361.known	chr4	-	7143	11	FSM	ENSMUSG00000040387.17	ENSMUST00000108218.10	7143	11	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_4	2.76405499221705	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTCTGTCTAATAAAACAT	NA	False	NA	NA	False	ATTAAA	-24	NA	24851124	24612553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_24617547_24626896_24626992_24629159_24629353_24632642_24632702_24649539_24650267_24682054_24682271_24708952_24709052_24743857_24743966_24792616_24792798_24800805_24800891_24850737
transcript_38363.known	chr4	+	745	2	FSM	ENSMUSG00000087399.2	ENSMUST00000142373.2	745	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAAAACAAAAAC	NA	False	NA	NA	False	NA	NA	NA	24792679	24800310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_24792900_24799785
transcript_38364.known	chr4	+	2358	2	FSM	ENSMUSG00000028261.14	ENSMUST00000146721.2	2358	2	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTCTGGTTTTTTCTTTC	11	True	NA	14	True	AATAAA	-27	NA	24898130	24903505	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_24898677_24901693
transcript_38365.known	chr4	+	3632	3	FSM	ENSMUSG00000028261.14	ENSMUST00000029925.10	3632	3	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_2	23.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATCTGCCTGCCTACTTCT	-37	True	NA	NA	False	AATAAA	-16	NA	24898082	24905001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_24898303_24898572_24898677_24901693
transcript_38366.known	chr4	+	673	4	FSM	ENSMUSG00000028261.14	ENSMUST00000151249.2	673	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	218.397700435594	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATTTTGCACATTAGCCCA	56	False	NA	-6	True	AATAAA	-7	NA	24898175	24903485	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_24898303_24898572_24898677_24901693_24901782_24903131
transcript_38368.nic	chr4	-	3892	20	NIC	ENSMUSG00000040359.15	novel	5189	19	NA	NA	-27	0	combination_of_known_junctions	TRUE	canonical	3	78	junction_1	36.6180404503927	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATGTTATACAGTCTAT	-1	True	NA	-10	True	AATAAA	-19	NA	25281848	25248599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_25249970_25250425_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
transcript_38370.known	chr4	-	4316	19	FSM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_3	22.816024799564	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACATTTTATGTTATACAG	-6	True	NA	-15	True	AATAAA	-14	NA	25281821	25248604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_25250689_25251335_25251517_25251931_25252018_25252298_25252380_25254558_25254690_25254770_25254935_25255997_25256116_25259214_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
transcript_38376.nic	chr4	-	1442	12	ISM	ENSMUSG00000040359.15	ENSMUST00000102994.10	4316	19	-27	10666	-27	-9124	5prime_fragment	FALSE	canonical	3	188	junction_2	16.3489833383714	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGGGAAGAAAAGATG	-1	True	NA	2	True	TATAAA	-15	NA	25281848	25259270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_25259338_25262205_25262327_25265422_25265603_25267691_25267868_25269027_25269175_25270559_25270619_25275805_25275937_25277988_25278104_25278603_25278702_25279345_25279375_25280622_25280769_25281675
transcript_38381.known	chr4	-	12134	3	FSM	ENSMUSG00000055373.9	ENSMUST00000084770.5	12134	3	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	8.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTTTTGGTTCTGTACA	303	False	NA	0	True	AATAAA	-21	NA	25800146	25609331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_25620821_25709027_25709115_25799588
transcript_38386.known	chr4	-	4867	5	FSM	ENSMUSG00000040520.8	ENSMUST00000041374.8	4867	5	0	0	0	0	multi-exon	TRUE	canonical	3	44	junction_4	9.33742469849155	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAAATCTATTCATTGTT	0	True	NA	-4	True	AATAAA	-25	NA	26346891	26324505	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_26328309_26329085_26329163_26336620_26336731_26340416_26340999_26346596
transcript_38388.known	chr4	+	6746	17	FSM	ENSMUSG00000028289.13	ENSMUST00000029964.12	6746	17	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_4	5.10170008428563	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTAAAGAAAATCCTGTCT	0	True	NA	NA	False	NA	NA	NA	28813130	28967499	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_28813481_28817444_28817510_28820998_28821669_28870556_28870713_28871660_28871997_28935703_28935829_28938595_28938780_28942585_28942695_28943322_28943379_28947527_28947654_28948597_28948784_28949328_28949391_28950358_28950569_28951262_28951413_28961288_28961483_28962409_28962566_28963888
transcript_3839.known	chr10	-	945	4	FSM	ENSMUSG00000038876.13	ENSMUST00000161508.3	945	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	93.3821301011185	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACATCAGTTGATGGTCAG	NA	False	NA	NA	False	NA	NA	NA	29238022	29223214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_29223880_29230287_29230444_29237280_29237342_29237959
transcript_38390.nic	chr4	+	1513	7	ISM	ENSMUSG00000028282.13	ENSMUST00000178925.8	6557	11	-46	12899	-24	865	5prime_fragment	FALSE	canonical	3	150	junction_1	38.5818034253916	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAAGTAGACATGTGAA	NA	False	NA	NA	False	NA	NA	NA	32615426	32640366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_32615493_32624083_32624167_32630177_32630247_32631065_32631167_32631805_32631881_32634767_32634884_32639363
transcript_38391.nic	chr4	+	2000	7	ISM	ENSMUSG00000028282.13	ENSMUST00000178925.8	6557	11	-46	12412	-24	1352	5prime_fragment	FALSE	canonical	3	150	junction_1	38.5818034253916	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGGAAGAAAAGAGGTTG	NA	False	NA	NA	False	AAAACA	-4	NA	32615426	32640853	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_32615493_32624083_32624167_32630177_32630247_32631065_32631167_32631805_32631881_32634767_32634884_32639363
transcript_38392.known	chr4	+	595	7	FSM	ENSMUSG00000028282.13	ENSMUST00000127619.2	595	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	91.4702440991362	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACACTGCACAGCCAAACT	21	False	NA	NA	False	NA	NA	NA	32615469	32639501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_32615493_32624083_32624167_32630177_32630247_32631065_32631167_32631815_32631881_32634767_32634884_32639363
transcript_38393.known	chr4	+	465	3	FSM	ENSMUSG00000045854.5	ENSMUST00000062802.5	465	3	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_2	3	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTTGGAATCCTCAATTG	-15	True	NA	22	True	ATTAAA	-22	NA	32800252	32801383	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_32800336_32800609_32800751_32801142
transcript_38395.known	chr4	+	345	1	FSM	ENSMUSG00000094344.2	ENSMUST00000180255.2	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	70	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCTTTTGTTAAGTTGGC	38	False	NA	-6	True	NA	NA	NA	32964887	32965232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_32964900_32965200
transcript_38396.known	chr4	+	5008	7	FSM	ENSMUSG00000028278.15	ENSMUST00000098190.10	5008	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	9.38823140367177	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTTGAAGTGGGGTCTCT	13	True	NA	4	True	AATAAA	-19	NA	32983036	33022180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_32983608_32995801_32996098_33004150_33004351_33005133_33005249_33007069_33007213_33012903_33013053_33018646
transcript_38397.known	chr4	+	3530	8	FSM	ENSMUSG00000028277.14	ENSMUST00000124992.8	3530	8	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_6	15.4813910675932	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTACTGGTGTTACTA	-32	True	NA	28	True	AATAAA	-38	NA	33031415	33052363	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_33031617_33036708_33036783_33038198_33038331_33040732_33040818_33041355_33041462_33043856_33043987_33045079_33045200_33049681
transcript_38399.nic	chr4	+	1912	6	ISM	ENSMUSG00000028280.10	ENSMUST00000029947.6	2286	10	19782	0	19782	0	3prime_fragment	FALSE	canonical	3	14	junction_2	4.22374241638857	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGATGTCATCACTGACT	NA	False	NA	8	True	AATAAA	-15	NA	33152302	33163588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_33152637_33157059_33157143_33158036_33158178_33160116_33160270_33161629_33161827_33162584
transcript_3840.known	chr10	-	781	4	FSM	ENSMUSG00000038876.13	ENSMUST00000214896.2	781	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	95.3601360923712	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGATATAATAGATATACCA	NA	False	NA	NA	False	AATATA	-37	NA	29238043	29223379	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_29223880_29230287_29230444_29237280_29237342_29237979
transcript_38400.nic	chr4	+	1090	5	ISM	ENSMUSG00000028280.10	ENSMUST00000029947.6	2286	10	19782	1580	19782	-1580	internal_fragment	FALSE	canonical	3	14	junction_2	4.7169905660283	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTATGTGCATTGTTGTT	NA	False	NA	NA	False	TTTAAA	-4	NA	33152302	33162008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_33152637_33157059_33157143_33158036_33158178_33160116_33160270_33161629
transcript_38402.known	chr4	+	829	5	FSM	ENSMUSG00000054679.9	ENSMUST00000108159.2	829	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	2.44948974278318	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGCTCCTCCCAGCAGAGC	-27	True	NA	NA	False	CATAAA	-13	NA	33209262	33231293	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_33209371_33223567_33223673_33225764_33225869_33226027_33226170_33230923
transcript_38404.known	chr4	+	4157	16	FSM	ENSMUSG00000028274.18	ENSMUST00000108153.9	4157	16	0	0	0	0	multi-exon	TRUE	canonical	3	214	junction_12	34.6965256025569	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGTCTTTCCTGTCTCG	-36	True	NA	11	True	AATAAA	-18	NA	33310310	33502614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_33310525_33320518_33320629_33324873_33324978_33325058_33325148_33329519_33329596_33330841_33331083_33337862_33337973_33338990_33339093_33356060_33356197_33362879_33362952_33368572_33368738_33379368_33379438_33404152_33404254_33443600_33443668_33498950_33499075_33500237
transcript_38407.known	chr4	+	2379	16	FSM	ENSMUSG00000028274.18	ENSMUST00000029942.8	2379	16	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_15	78.2297471128044	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGTTCTTCTGGTTTTG	-19	True	NA	13	True	ATTAAA	-26	NA	33310327	33500914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_33310525_33320518_33320629_33324873_33324978_33325058_33325148_33329519_33329596_33330841_33331083_33337862_33337973_33338990_33339093_33356060_33356197_33362879_33362952_33368572_33368738_33379368_33379438_33404152_33404254_33443600_33443668_33498950_33499075_33500298
transcript_38416.known	chr4	-	2266	20	FSM	ENSMUSG00000040044.12	ENSMUST00000108142.8	2266	20	0	0	0	0	multi-exon	FALSE	canonical	3	292	junction_6	92.190426792828	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTGCTTCATTCTTGCT	-5	True	NA	-17	True	CATAAA	-21	NA	34614913	34570795	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578030_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
transcript_38419.known	chr4	-	2300	20	FSM	ENSMUSG00000040044.12	ENSMUST00000048706.10	2300	20	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_6	85.9268193438375	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTGCTTCATTCTTGCT	NA	False	NA	-17	True	CATAAA	-21	NA	34614944	34570795	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_34571019_34571728_34571809_34572464_34572573_34575031_34575174_34576351_34576450_34577952_34578033_34579742_34579877_34584803_34584884_34585572_34585690_34586443_34586508_34586948_34587083_34593060_34593175_34595076_34595237_34597307_34597442_34598607_34598757_34599703_34599809_34605536_34605682_34607130_34607229_34611021_34611077_34614864
transcript_38429.nnic	chr4	+	1979	21	NNC	ENSMUSG00000028292.15	novel	1868	20	NA	NA	-12	0	at_least_one_novel_splicesite	TRUE	canonical	3	83	junction_9	178.38710715744	56	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGTGTGTAGTAGTGTG	-24	True	NA	8	True	AATAGA	-23	NA	34614944	34660163	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630472_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34640873_34640977_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
transcript_3843.known	chr10	-	1948	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160372.9	1948	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_2	66.5	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATAATTTGTTTGAGTC	NA	False	NA	NA	False	AATAAA	-15	NA	29238043	29222171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_29223880_29230287_29230444_29237959
transcript_38434.known	chr4	+	1843	20	FSM	ENSMUSG00000028292.15	ENSMUST00000142045.8	1843	20	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_4	142.027152021567	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGTGTGTAGTAGTGTG	5	True	NA	8	True	AATAGA	-23	NA	34614973	34660163	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_34615027_34618553_34618628_34623410_34623514_34625400_34625485_34630476_34630571_34633657_34633714_34636951_34637036_34639244_34639322_34645696_34645856_34646507_34646615_34647785_34647882_34650190_34650252_34652131_34652209_34654809_34654935_34656005_34656074_34656152_34656263_34656767_34656864_34657166_34657242_34659490_34659555_34659983
transcript_3844.known	chr10	-	4323	3	FSM	ENSMUSG00000038876.13	ENSMUST00000160144.9	4323	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	74.5	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTGTTTCAACTTTTC	NA	False	NA	2	True	AATAAA	-20	NA	29238438	29220171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_29223880_29230287_29230444_29237979
transcript_38446.known	chr4	+	434	2	FSM	ENSMUSG00000028292.15	ENSMUST00000149620.2	434	2	0	0	0	0	multi-exon	FALSE	canonical	3	576	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCCTCTTTGGTTGTGT	-8	True	NA	NA	False	NA	NA	NA	34614960	34618921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_34615027_34618553
transcript_38448.nic	chr4	-	2150	9	NIC	ENSMUSG00000028293.15	novel	2039	8	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	59.0750317393059	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTGCAGTTACTTTGT	-12	True	NA	-13	True	AATAAA	-14	NA	34687429	34663256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34673808_34673929_34675029_34675183_34675471_34675632_34683284_34683463_34687243
transcript_38451.known	chr4	-	2039	8	FSM	ENSMUSG00000028293.15	ENSMUST00000029970.14	2039	8	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_4	17.6831523646385	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTGCAGTTACTTTGT	-21	True	NA	-13	True	AATAAA	-14	NA	34687438	34663256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_34664231_34668925_34669061_34669486_34669664_34671779_34671847_34675029_34675183_34675471_34675632_34683284_34683463_34687243
transcript_38452.known	chr4	-	1688	11	FSM	ENSMUSG00000028294.16	ENSMUST00000108136.8	1688	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	1.88679622641132	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTACTGTGTATTTTTT	16	True	NA	NA	False	ATTAAA	-15	NA	34730178	34711331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_34711596_34714394_34714536_34716304_34716504_34719044_34719165_34719572_34719782_34721415_34721575_34722607_34722797_34724814_34724906_34727904_34727989_34728795_34728909_34730059
transcript_38453.known	chr4	-	2246	13	FSM	ENSMUSG00000028294.16	ENSMUST00000029971.12	2246	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.46644143115812	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATATTTTAGACAAAGTTT	-12	True	NA	NA	False	ATTAAA	-34	NA	34730206	34688558	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_34689015_34692386_34692531_34711401_34711596_34714394_34714536_34716304_34716504_34719044_34719165_34719572_34719782_34721415_34721575_34722607_34722797_34724814_34724906_34727904_34727989_34728795_34728909_34730059
transcript_38454.known	chr4	-	557	5	FSM	ENSMUSG00000028294.16	ENSMUST00000160209.2	557	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.9474565306379	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGGTGTTTTGTTTTGTTTT	-1	True	NA	NA	False	AATAAA	-19	NA	34730195	34723559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_34723697_34724814_34724906_34727904_34727989_34728795_34728909_34730063
transcript_38455.known	chr4	-	782	3	FSM	ENSMUSG00000028295.15	ENSMUST00000108134.8	782	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	76	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	-13	True	NA	NA	False	AATAAA	-6	NA	34778364	34768663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_34769148_34771257_34771415_34778223
transcript_38456.known	chr4	-	786	3	FSM	ENSMUSG00000028295.15	ENSMUST00000029972.4	786	3	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	5.5	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTTGAGTTTTTCTTTT	NA	False	NA	NA	False	AATAAA	-6	NA	34778423	34768663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_34769148_34771257_34771415_34778278
transcript_38457.known	chr4	-	9986	8	FSM	ENSMUSG00000039967.15	ENSMUST00000047950.6	9986	8	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_4	23.430313524081	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAATAATGTTTTGTTCAT	-19	True	NA	5	True	AATAAA	-37	NA	34882960	34803112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_34812044_34816273_34816416_34819463_34819601_34826692_34826896_34839331_34839468_34839568_34839648_34839831_34839987_34882757
transcript_38458.known	chr4	-	951	3	FSM	ENSMUSG00000085824.8	ENSMUST00000125820.2	951	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGAGTCTGGGGTCTTCC	NA	False	NA	NA	False	NA	NA	NA	34911481	34909788	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_34910609_34910850_34910951_34911450
transcript_38459.known	chr4	-	6030	4	FSM	ENSMUSG00000073910.11	ENSMUST00000102975.10	6030	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	2.86744175568088	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTCTAGTCTGTCGTCTTT	-32	True	NA	NA	False	AATAAA	-16	NA	35157484	34949073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_34954048_34985915_34986119_35083769_35084390_35157251
transcript_38461.known	chr4	-	1023	2	FSM	ENSMUSG00000073910.11	ENSMUST00000155725.2	1023	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGAAAAAGAAAAAAAAATCT	-32	True	NA	NA	False	NA	NA	NA	35157484	35083599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_35084390_35157251
transcript_38462.known	chr4	-	3193	11	FSM	ENSMUSG00000028300.15	ENSMUST00000108127.4	3193	11	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_8	10.8355895086516	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATGTTTTAGTTCATT	NA	False	NA	-5	True	AATAAA	-16	NA	35225880	35191286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_35193069_35193184_35193295_35194136_35194195_35196972_35197209_35205767_35205885_35211291_35211365_35213008_35213074_35213548_35213645_35217212_35217273_35218413_35218917_35225787
transcript_38463.known	chr4	-	873	1	FSM	ENSMUSG00000082762.2	ENSMUST00000121722.2	873	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGTTTTTATATGAGAAAA	8313	False	NA	NA	False	NA	NA	NA	35202975	35202102	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_35202100_35203000
transcript_38464.known	chr4	+	3832	21	FSM	ENSMUSG00000028405.10	ENSMUST00000102973.4	3832	21	0	0	0	0	multi-exon	TRUE	canonical	3	234	junction_5	35.2306684580353	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGGCTTTGGAGTTGA	-13	True	NA	9	True	ATTAAA	-17	NA	40143080	40198338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_40143542_40163718_40163846_40164608_40164778_40167053_40167192_40175664_40175735_40175841_40176026_40176495_40176636_40177778_40177951_40178972_40179074_40180171_40180289_40181382_40181543_40182803_40182940_40183567_40183653_40184900_40185058_40186315_40186441_40188165_40188271_40189343_40189487_40190736_40190885_40193738_40193862_40196244_40196431_40197553
transcript_38465.known	chr4	-	3533	9	FSM	ENSMUSG00000040296.16	ENSMUST00000137903.8	3533	9	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	6.68487097856047	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTATATGGGTGTTTTTT	-9	True	NA	NA	False	NA	NA	NA	40220600	40203776	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_40206107_40208450_40208595_40208770_40208923_40209878_40210050_40211549_40211641_40213730_40213880_40216354_40216491_40217329_40217488_40220398
transcript_38466.known	chr4	-	659	4	FSM	ENSMUSG00000071014.11	ENSMUST00000095128.10	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	2502	junction_3	28.8251433455046	1809	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATTAGCTACTTTTTTCT	-10	True	NA	63	True	AGTAAA	-20	NA	40279421	40270590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_40270848_40272809_40272855_40277652_40277746_40279157
transcript_38467.known	chr4	-	3856	3	FSM	ENSMUSG00000036822.7	ENSMUST00000042575.7	3856	3	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	19	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGTGCAACATTGATT	9561	False	NA	0	True	AATAAA	-28	NA	40269850	40259600	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_40263082_40268303_40268502_40269673
transcript_3847.known	chr10	-	635	1	FSM	ENSMUSG00000069682.7	ENSMUST00000092620.6	635	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19072	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAAATCAATAGAC	NA	False	NA	-8	True	AATAAA	-21	NA	29575376	29574741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_29574700_29575400
transcript_38471.known	chr4	-	480	3	FSM	ENSMUSG00000071014.11	ENSMUST00000108108.3	480	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	1267.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATCACTGTCCGTGTTACT	2	True	NA	-11	True	AATAAA	-17	NA	40279409	40270664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_40270848_40272809_40272855_40279157
transcript_38472.known	chr4	+	1044	2	FSM	ENSMUSG00000028407.5	ENSMUST00000129758.3	1044	2	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	0	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGATACTTTCTTTACA	-1	True	NA	NA	False	AATAAA	-6	NA	40269578	40270940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_40269720_40270037
transcript_38476.known	chr4	-	5383	8	FSM	ENSMUSG00000028411.16	ENSMUST00000068125.11	5383	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	54.3187869180167	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTAGTGTCATGCTTTT	1	True	NA	NA	False	AATAAA	-25	NA	40702914	40682381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695424_40697216_40697354_40702723
transcript_38477.known	chr4	-	1378	8	FSM	ENSMUSG00000028411.16	ENSMUST00000129021.9	1378	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_6	41.4453168128111	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTGGATTGTGTAGTAT	21	False	NA	-8	True	AATATA	-17	NA	40703187	40686241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40694851_40695137_40695376_40695419_40697216_40697354_40703136
transcript_3848.known	chr10	-	1532	3	FSM	ENSMUSG00000075266.6	ENSMUST00000099985.6	1532	3	0	0	0	0	multi-exon	FALSE	canonical	3	2101	junction_1	71	854	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAGAGTGATTGTACTACA	NA	False	NA	NA	False	NA	NA	NA	30076556	30072004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_30073223_30074461_30074576_30076356
transcript_38480.known	chr4	-	2391	7	FSM	ENSMUSG00000028411.16	ENSMUST00000108103.9	2391	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	56.8812115045225	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATATAAATTATGAC	8	True	NA	NA	False	TTTAAA	-20	NA	40703162	40684923	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_40686714_40688108_40688213_40690968_40691196_40693389_40693450_40695376_40695424_40697216_40697354_40703136
transcript_3849.known	chr10	-	4143	2	FSM	ENSMUSG00000075266.6	ENSMUST00000216853.2	4143	2	0	0	0	0	multi-exon	FALSE	canonical	3	2243	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATCAGACTTGACTTGAA	NA	False	NA	NA	False	NA	NA	NA	30076488	30070564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_30074576_30076356
transcript_38490.known	chr4	+	3376	9	FSM	ENSMUSG00000028410.14	ENSMUST00000030118.10	3376	9	0	0	0	0	multi-exon	FALSE	canonical	3	1814	junction_2	361.659175709673	2247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGCTGTTCAGCATTTT	-7	True	NA	NA	False	ATTAAA	-13	NA	40722479	40734964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_40722634_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
transcript_38495.known	chr4	+	5622	9	FSM	ENSMUSG00000028410.14	ENSMUST00000164233.8	5622	9	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	940.162278213182	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGAATCAATCCGAAGCT	-35	True	NA	NA	False	ATTAAA	-9	NA	40722921	40737149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_40723137_40723702_40723845_40723972_40724151_40726104_40726210_40727955_40728184_40730172_40730288_40731683_40731800_40732075_40732177_40732727
transcript_385.known	chr1	-	1163	7	FSM	ENSMUSG00000043716.14	ENSMUST00000058437.14	1163	7	0	0	0	0	multi-exon	FALSE	canonical	3	5309	junction_1	773.772953348289	23255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGGAGTCTTTGTTGG	NA	False	NA	-5	True	AATAAA	-25	NA	16174886	16171518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_16171584_16171950_16172161_16172713_16172824_16172915_16173054_16173391_16173559_16173733_16173909_16174588
transcript_3850.nic	chr10	-	1958	14	NIC	ENSMUSG00000019792.9	novel	2359	13	NA	NA	22	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_7	65.9269813043592	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTGATACTCAGTATTT	NA	False	NA	-2	True	AATAAA	-23	NA	30476723	30410710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30443756_30443868_30463434_30463592_30466020_30466156_30466838_30466932_30467016_30467099_30470110_30470185_30473735_30473802_30476585
transcript_38502.known	chr4	-	2418	12	FSM	ENSMUSG00000028409.12	ENSMUST00000030117.5	2418	12	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_8	75.1643928360578	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTTCCATGTTGATGTCC	8535	False	NA	61	True	ACTAAA	-34	NA	40757923	40736541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_40737396_40738289_40738443_40739518_40739687_40743014_40743142_40744030_40744159_40745451_40745569_40748538_40748659_40751924_40752054_40753486_40753598_40754507_40754661_40755626_40755838_40757776
transcript_38504.nnic	chr4	-	1140	8	NNC	ENSMUSG00000028416.14	novel	1295	7	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_7	718.854928454459	81	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTTGGCTCTGTGGTGG	-5	True	NA	-9	True	AAAAAG	-37	NA	40948314	40936400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_40936677_40937131_40937195_40939076_40939185_40941524_40941639_40943624_40943708_40946168_40946298_40947721_40948046_40948271
transcript_38505.nnic	chr4	-	1157	8	NNC	ENSMUSG00000028416.14	novel	1295	7	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	161	junction_7	669.499477983671	86	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCATGTTGGCTCTGTGGTGG	NA	False	NA	-9	True	AAAAAG	-37	NA	40948326	40936400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_40936677_40937131_40937195_40939076_40939185_40941524_40941639_40943624_40943708_40946168_40946298_40947721_40948051_40948271
transcript_38507.known	chr4	+	1519	8	FSM	ENSMUSG00000028419.6	ENSMUST00000030128.6	1519	8	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_1	44.0352363547231	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAATTGTAGTATCGCTTT	0	True	NA	14	True	AATAAA	-16	NA	40948406	40965303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_40948677_40949453_40949559_40950513_40950561_40952367_40952462_40952981_40953054_40958889_40958999_40960858_40960972_40964594
transcript_38509.known	chr4	+	4594	24	FSM	ENSMUSG00000028423.16	ENSMUST00000098143.11	4594	24	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_17	193.960434840598	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTATTTTGTTTATTGAG	6045	False	NA	34	True	ATTAAA	-19	NA	40970905	41025993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41015202_41015434_41016076_41016151_41017971_41018074_41018447_41018490_41021748_41021848_41022259_41022327_41023613_41023760_41024473_41024579_41024800
transcript_38511.nnic	chr4	+	3424	16	NNC	ENSMUSG00000028423.16	novel	3617	16	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_15	149.55756974044	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTTCTTGTCAGGCTA	6053	False	NA	16	True	NA	NA	NA	40970913	41012608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41011711
transcript_38512.known	chr4	+	4349	16	FSM	ENSMUSG00000028423.16	ENSMUST00000030133.15	4349	16	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_8	92.9020033272815	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTTGCCTCTTCATTTTT	6045	False	NA	NA	False	AATAAA	-15	NA	40970905	41013871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_40971060_40976352_40977343_40984892_40985052_40986692_40986771_40988621_40988728_40990792_40990865_40991743_40991884_40993758_40993859_40993962_40994181_40996814_40996913_40999684_40999716_41003017_41003098_41004327_41004437_41004825_41004946_41009189_41009270_41012057
transcript_38515.nic	chr4	+	1459	3	ISM	ENSMUSG00000028423.16	ENSMUST00000091614.7	3617	16	8	27393	8	-26954	5prime_fragment	FALSE	canonical	3	562	junction_1	20.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAAAGAAAATGT	6053	False	NA	NA	False	NA	NA	NA	40970913	40985215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_40971060_40976352_40977343_40984892
transcript_38519.known	chr4	-	1765	6	FSM	ENSMUSG00000028435.9	ENSMUST00000055327.8	1765	6	0	0	0	0	multi-exon	FALSE	canonical	3	1694	junction_1	130.458269189806	282	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTTTGTGTGTGTTTT	-1	True	NA	-4	True	AATAAA	-21	NA	41098183	41092721	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_41093703_41093781_41094000_41094265_41094385_41094700_41094839_41095144_41095272_41098001
transcript_38520.known	chr4	-	4599	26	FSM	ENSMUSG00000028430.15	ENSMUST00000030138.9	4599	26	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_9	34.7585960591046	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACTTGTCTTTCCTCTT	NA	False	NA	-4	True	NA	NA	NA	41124455	41114426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_41115507_41115681_41115784_41115883_41116079_41116375_41116466_41116594_41116720_41117394_41117493_41117659_41117813_41118089_41118254_41118417_41118573_41118648_41118767_41118882_41119024_41119236_41119313_41119412_41119562_41119753_41119877_41120006_41120185_41120273_41120390_41120537_41120640_41120723_41120783_41121006_41121128_41121210_41121366_41121451_41121587_41121778_41121948_41122123_41122304_41123258_41123376_41123458_41123660_41124158
transcript_38522.known	chr4	+	3600	5	FSM	ENSMUSG00000036241.4	ENSMUST00000040008.4	3600	5	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_4	37.5857353260516	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGTATTGCTATTTCCC	7	False	NA	NA	False	AATAAA	-17	NA	41135742	41193380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_41136247_41174040_41174128_41183244_41183343_41189151_41189287_41190604
transcript_38525.known	chr4	-	4368	29	FSM	ENSMUSG00000028433.15	ENSMUST00000030143.13	4368	29	0	0	0	0	multi-exon	TRUE	canonical	3	748	junction_17	84.4073804080362	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTCTTGGTCTCCGTGTTCT	218	False	NA	-6	True	AATAAA	-12	NA	41275135	41194315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_41195247_41195333_41195526_41195607_41195673_41195745_41195854_41195943_41196044_41196327_41196534_41196729_41196809_41199217_41199266_41199493_41199586_41199715_41199903_41201463_41201534_41202273_41202458_41203532_41203573_41205523_41205738_41206152_41206326_41206832_41207105_41209352_41209570_41211704_41211895_41216565_41216634_41218310_41218364_41221555_41221622_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
transcript_38526.nnic	chr4	-	1004	9	NNC	ENSMUSG00000028433.15	novel	4380	29	NA	NA	-13	-193	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	334.30073941737	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGAGTGTTGTTGATGTTT	196	False	NA	NA	False	AATAAA	-18	NA	41275157	41221784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_41221954_41223355_41223460_41226279_41226335_41227198_41227277_41229694_41229849_41233603_41233715_41235516_41235595_41251534_41251672_41275039
transcript_38529.known	chr4	-	3442	9	FSM	ENSMUSG00000028436.9	ENSMUST00000030145.9	3442	9	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_1	50.3213113402264	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTTTGAGTGACTATATA	1860	False	NA	0	True	AATAAA	-18	NA	41314889	41291299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_41293215_41293932_41294112_41296310_41296474_41298285_41298352_41299406_41299601_41301333_41301395_41302613_41302821_41313210_41313466_41314487
transcript_38539.known	chr4	+	3456	7	FSM	ENSMUSG00000028437.15	ENSMUST00000072866.12	3456	7	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_5	24.6981780704569	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAGTTCTTAAATGTATG	NA	False	NA	NA	False	AATATA	-14	NA	41348995	41390525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_41349232_41366889_41366931_41371724_41371850_41378946_41379871_41387174_41387358_41388095_41388198_41388680
transcript_38542.known	chr4	+	2514	6	FSM	ENSMUSG00000028437.15	ENSMUST00000108060.10	2514	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	125.151108664686	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCATGCTGCCTTAACCTC	NA	False	NA	5	True	AATAAA	-14	NA	41348995	41389766	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_41349232_41366889_41366931_41371724_41371850_41378946_41379871_41388095_41388198_41388680
transcript_38552.known	chr4	+	845	3	FSM	ENSMUSG00000028443.7	ENSMUST00000030154.7	845	3	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	26.5	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGATGCTTTCTTGGAC	4	True	NA	32	True	AATAAA	-28	NA	41465150	41480926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_41465181_41477513_41477648_41480245
transcript_38553.known	chr4	-	4173	2	FSM	ENSMUSG00000046312.5	ENSMUST00000054920.5	4173	2	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTATTTGTTGTTTTCTTGCT	8	True	NA	-2	True	NA	NA	NA	41503076	41495603	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_41499691_41502990
transcript_38554.known	chr4	-	721	4	FSM	ENSMUSG00000028441.13	ENSMUST00000124019.8	721	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTGCTGTGTCCTTACT	-6	True	NA	NA	False	AATAAA	-17	NA	41507764	41505008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_41505169_41505567_41505655_41507098_41507329_41507520
transcript_38555.known	chr4	+	965	4	FSM	ENSMUSG00000061322.16	ENSMUST00000143198.2	965	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.816496580927726	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTATTTGTTTTCTGTTC	1043	False	NA	NA	False	AATAAA	-25	NA	41631643	41638158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_41631788_41632139_41632489_41634961_41635148_41637872
transcript_38557.known	chr4	+	2009	13	FSM	ENSMUSG00000073889.11	ENSMUST00000098132.11	2009	13	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	3.12138680005467	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCGTCTAATGTTGCT	3938	False	NA	4	True	AATAAA	-20	NA	41760195	41769474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_41760552_41763581_41763682_41763824_41763886_41764708_41764879_41765006_41765122_41765274_41765308_41765385_41765553_41766110_41766275_41767459_41767602_41767945_41768072_41768168_41768266_41768492_41768576_41769079
transcript_38558.known	chr4	+	1595	11	FSM	ENSMUSG00000036073.19	ENSMUST00000084695.12	1595	11	0	0	0	0	multi-exon	FALSE	canonical	2	236	junction_6	31.3438989278615	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGAGGAGTAGTGTGGA	-11	True	NA	32	True	AATAAA	-33	NA	41755227	41758695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_41755653_41755960_41756131_41756346_41756423_41756512_41756562_41756681_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083_41758239_41758502
transcript_3856.known	chr10	-	2359	13	FSM	ENSMUSG00000019792.9	ENSMUST00000019927.7	2359	13	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_10	17.7080882335979	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGCCTATTTGATTTGTGG	NA	False	NA	NA	False	AGTAAA	-21	NA	30476745	30410220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30463434_30463592_30466020_30466156_30466838_30466932_30467016_30467099_30470110_30470185_30473735_30473802_30476585
transcript_38561.known	chr4	+	1859	10	FSM	ENSMUSG00000036073.19	ENSMUST00000108038.3	1859	10	0	0	0	0	multi-exon	FALSE	canonical	2	236	junction_6	33.0177655135258	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGAGGAGTAGTGTGGA	-11	True	NA	32	True	AATAAA	-33	NA	41755227	41758695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_41755653_41755960_41756131_41756346_41756423_41756512_41756562_41756681_41756812_41756938_41756996_41757155_41757279_41757459_41757593_41757694_41757779_41758083
transcript_38569.known	chr4	-	590	6	FSM	ENSMUSG00000073888.14	ENSMUST00000108037.9	590	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	16.7020956768904	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTCTCTTTTATTTCA	28	False	NA	5	True	AATAAA	-28	NA	41774142	41769466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_41769655_41769843_41769977_41771137_41771236_41773464_41773525_41773735_41773804_41774099
transcript_38572.known	chr4	-	1640	4	FSM	ENSMUSG00000036078.17	ENSMUST00000059354.15	1640	4	0	0	0	0	multi-exon	FALSE	canonical	3	474	junction_2	54.2647829320883	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTTCCTTATGTGTCTAA	3747	False	NA	NA	False	AATAAA	-17	NA	41741359	41738492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_41739581_41740549_41740643_41740775_41740977_41741101
transcript_38573.nic	chr4	-	1620	4	NIC	ENSMUSG00000036078.17	novel	1640	4	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_2	247.10906274131	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTTCCTTATGTGTCTAA	3720	False	NA	NA	False	AATAAA	-17	NA	41741386	41738492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_41739581_41740549_41740643_41740822_41740977_41741101
transcript_38579.known	chr4	-	556	4	FSM	ENSMUSG00000073888.14	ENSMUST00000136768.8	556	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	19.3045763140937	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTCTCTTTTATTTCA	569	False	NA	5	True	AATAAA	-28	NA	41773601	41769466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_41769655_41769843_41769977_41771137_41771236_41773464
transcript_38580.known	chr4	-	350	4	FSM	ENSMUSG00000073888.14	ENSMUST00000108032.3	350	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	26.6124448749494	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCACTGCCTCCCTGACTT	12	False	NA	NA	False	ATTAAA	-14	NA	41774158	41773187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_41773351_41773464_41773525_41773735_41773804_41774099
transcript_38582.known	chr4	-	1547	3	FSM	ENSMUSG00000036078.17	ENSMUST00000071561.7	1547	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	290.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTTCCTTATGTGTCTAA	3747	False	NA	NA	False	AATAAA	-17	NA	41741359	41738492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_41739581_41740775_41740977_41741101
transcript_38583.known	chr4	-	856	2	FSM	ENSMUSG00000036114.4	ENSMUST00000038434.4	856	2	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	0	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGCCTGTTGTGTAAG	9620	False	NA	-17	True	AATAAA	-14	NA	41713534	41712032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_41712815_41713460
transcript_38584.known	chr4	-	613	2	FSM	ENSMUSG00000036078.17	ENSMUST00000142840.2	613	2	0	0	0	0	multi-exon	FALSE	canonical	3	604	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCTCCCTGGTAAGCCACA	3920	False	NA	NA	False	NA	NA	NA	41741186	41740448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_41740977_41741101
transcript_38585.known	chr4	-	973	7	FSM	ENSMUSG00000028447.12	ENSMUST00000030158.11	973	7	0	0	0	0	multi-exon	FALSE	canonical	3	869	junction_5	34.1829229619443	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATACAGTGGGGCATTGTAT	-16	True	NA	NA	False	GATAAA	-22	NA	41723170	41714797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_41715260_41715395_41715456_41716395_41716455_41717356_41717441_41719836_41719924_41720782_41720868_41723034
transcript_38586.known	chr4	+	1768	13	FSM	ENSMUSG00000073889.11	ENSMUST00000108042.3	1768	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.0714111667687	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGTCGTCTAATGTTGCT	1803	False	NA	4	True	AATAAA	-20	NA	41762308	41769474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_41762424_41763581_41763682_41763824_41763886_41764708_41764879_41765006_41765122_41765274_41765308_41765385_41765553_41766110_41766275_41767459_41767602_41767945_41768072_41768168_41768266_41768492_41768576_41769079
transcript_38587.known	chr4	-	552	4	FSM	ENSMUSG00000073888.14	ENSMUST00000138337.8	552	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	40.1192666378083	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCGTCTCTTTTATTTCA	633	False	NA	5	True	AATAAA	-28	NA	41773537	41769466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_41769655_41769843_41769977_41771137_41771296_41773464
transcript_38588.known	chr4	+	3093	4	FSM	ENSMUSG00000036052.15	ENSMUST00000098112.9	3093	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	4.32049379893857	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTATGGGGTTGTCTGTCC	-26	True	NA	NA	False	ATTAAA	-29	NA	42949866	42959425	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_42950005_42953140_42953386_42956525_42957128_42957317
transcript_38589.known	chr4	-	3316	17	FSM	ENSMUSG00000028452.8	ENSMUST00000030164.8	3316	17	0	0	0	0	multi-exon	FALSE	canonical	2	1390	junction_12	381.614124271823	406	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCGTTCTGGCCACTAT	10011	False	NA	-15	True	AATAAA	-18	NA	43000507	42979962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_42980635_42980793_42980949_42982530_42982687_42982840_42983150_42983363_42983577_42984303_42984427_42984530_42984696_42985153_42985267_42985931_42986068_42986145_42986280_42988661_42988765_42990745_42990878_42993148_42993280_42993685_42993829_42995895_42996069_42996231_42996344_43000161
transcript_3859.nic	chr10	-	1714	12	NIC	ENSMUSG00000019792.9	novel	2359	13	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	52.8487628572059	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTGATACTCAGTATTT	NA	False	NA	-2	True	AATAAA	-23	NA	30476672	30410710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30463434_30463592_30466020_30466156_30466838_30466932_30470110_30470185_30473735_30473802_30476585
transcript_386.known	chr1	-	3030	14	FSM	ENSMUSG00000025920.20	ENSMUST00000162751.8	3030	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	37.0563300615851	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCAGGTGGCCTCCTGGGC	NA	False	NA	NA	False	ATTAAA	-20	NA	16589530	16298897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_16300091_16301226_16301316_16415927_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16533258_16533419_16556243_16556375_16579565_16579633_16589396
transcript_3860.nic	chr10	-	1690	12	NIC	ENSMUSG00000019792.9	novel	2359	13	NA	NA	22	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_6	51.2211216763663	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTGATACTCAGTATTT	NA	False	NA	-2	True	AATAAA	-23	NA	30476723	30410710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30466020_30466156_30466838_30466932_30467016_30467099_30470110_30470185_30473735_30473802_30476585
transcript_38603.known	chr4	-	2771	14	FSM	ENSMUSG00000028453.11	ENSMUST00000030165.5	2771	14	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_11	17.9578731229673	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTAAGTTGTATGTGTGTG	163	False	NA	-6	True	ATTAAA	-16	NA	43010355	43002342	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_43003093_43003226_43003345_43003782_43003933_43004558_43004606_43004743_43005034_43005210_43005278_43006461_43006614_43006749_43006897_43006983_43007115_43007267_43007404_43008710_43008914_43009147_43009280_43009706_43009801_43010001
transcript_38605.nic	chr4	-	3595	11	NIC	ENSMUSG00000028454.17	novel	3525	11	NA	NA	2	0	intron_retention	FALSE	canonical	3	84	junction_10	34.3634980757198	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCTAAGATCTGTGAGG	-5	True	NA	-7	True	AATAAA	-21	NA	43025817	43017634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562_43025075_43025779
transcript_38609.known	chr4	-	4239	10	FSM	ENSMUSG00000028454.17	ENSMUST00000098109.9	4239	10	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_4	26.4280995238864	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGCTAAGATCTGTGAGG	5675	False	NA	-7	True	AATAAA	-21	NA	43025756	43017634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_43018039_43018147_43018219_43019211_43019436_43019646_43019854_43020266_43021795_43022011_43022195_43022606_43022767_43023369_43023494_43023671_43023816_43024562
transcript_38615.known	chr4	-	1874	10	FSM	ENSMUSG00000028455.16	ENSMUST00000030169.15	1874	10	0	0	0	0	multi-exon	FALSE	canonical	3	2352	junction_9	320.749854459519	1211	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGAGAGATGGCTGTGGTG	8589	False	NA	-4	True	AATAAA	-19	NA	43031710	43027689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_43028294_43028937_43029067_43029278_43029359_43029492_43029638_43029769_43029905_43030048_43030151_43030239_43030299_43030435_43030536_43030970_43031109_43031328
transcript_3862.known	chr10	-	1576	11	FSM	ENSMUSG00000019792.9	ENSMUST00000215595.2	1576	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	70.5592658691968	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGTGATACTCAGTATTT	NA	False	NA	-2	True	AATAAA	-23	NA	30476691	30410710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_30411241_30423652_30423774_30434914_30435047_30435159_30435233_30436813_30436979_30442421_30442503_30466020_30466156_30466838_30466932_30470110_30470185_30473735_30473802_30476585
transcript_38625.known	chr4	-	3107	9	FSM	ENSMUSG00000036002.13	ENSMUST00000107956.8	3107	9	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_5	6.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCTCTACTTTTTTTTG	409	False	NA	2	True	AATAAA	-21	NA	43045797	43032413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835_43036805_43037062_43037207_43045647
transcript_38626.known	chr4	-	3280	9	FSM	ENSMUSG00000036002.13	ENSMUST00000107958.8	3280	9	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_8	13.7636296085008	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACCTCTACTTTTTTTTG	11	True	NA	2	True	AATAAA	-21	NA	43040288	43032413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_43033689_43033811_43033988_43034084_43034154_43034375_43034535_43034658_43034765_43034942_43035002_43035835_43036805_43037062_43037207_43039965
transcript_38630.known	chr4	+	817	6	FSM	ENSMUSG00000028461.13	ENSMUST00000030181.12	817	6	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_5	16.9162643630324	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTCCTCTGTGCTT	-26	True	NA	14	True	AGTAAA	-45	NA	43493361	43495921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341_43495433_43495508_43495622_43495696
transcript_38631.known	chr4	+	865	5	FSM	ENSMUSG00000028461.13	ENSMUST00000107922.3	865	5	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_4	11.5433963806152	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGTGTTCCTCTGTGCTT	1	True	NA	14	True	AGTAAA	-45	NA	43493388	43495921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341_43495433_43495508
transcript_38633.known	chr4	+	863	4	FSM	ENSMUSG00000028461.13	ENSMUST00000137113.2	863	4	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_1	2.94392028877595	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAATGGGGAACAACCAC	29	True	NA	-36	True	GGGGCT	-40	NA	43493416	43495871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_43493537_43493607_43493760_43495194_43495256_43495341
transcript_38638.known	chr4	-	1659	9	FSM	ENSMUSG00000051517.15	ENSMUST00000054538.13	1659	9	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	13.833270582187	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCCTGTCTAAATCACG	9051	False	NA	-3	True	AATAAA	-18	NA	43499695	43496141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_43496721_43496820_43496910_43497086_43497317_43497581_43497711_43497958_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
transcript_38639.nnic	chr4	-	1675	9	NNC	ENSMUSG00000051517.15	novel	1659	9	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	39.6986696880387	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCCTGTCTAAATCACG	9053	False	NA	-3	True	AATAAA	-18	NA	43499693	43496141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_43496739_43496820_43496910_43497086_43497317_43497581_43497711_43497958_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
transcript_3864.known	chr10	-	687	6	FSM	ENSMUSG00000019791.13	ENSMUST00000216617.2	687	6	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_5	98.2148664917893	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTACGTGAAAATTTTCTC	NA	False	NA	NA	False	NA	NA	NA	30505628	30484226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_30484420_30486312_30486440_30487643_30487714_30490708_30490827_30505319_30505398_30505527
transcript_38641.known	chr4	-	1508	8	FSM	ENSMUSG00000051517.15	ENSMUST00000125834.8	1508	8	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	13.3248272186983	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTCAGTGGAACAAGTCC	-14	True	NA	NA	False	NA	NA	NA	43499661	43496523	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_43496721_43496820_43496910_43497086_43497711_43497958_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
transcript_38642.nic	chr4	-	2170	7	NIC	ENSMUSG00000051517.15	novel	1659	9	NA	NA	2	0	intron_retention	FALSE	canonical	3	106	junction_4	12.5088857306405	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTCCTGTCTAAATCACG	9053	False	NA	-3	True	AATAAA	-18	NA	43499693	43496141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_43496721_43496820_43496910_43497086_43498030_43498585_43498705_43498895_43499017_43499242_43499338_43499469
transcript_38644.known	chr4	-	2595	4	FSM	ENSMUSG00000051517.15	ENSMUST00000128754.8	2595	4	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_2	13.1233464566864	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCCTTCCTGTCTAAAT	28	True	NA	-7	True	AATAAA	-14	NA	43499619	43496145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_43498030_43498585_43498705_43498895_43499338_43499469
transcript_38646.known	chr4	-	1164	9	FSM	ENSMUSG00000028464.17	ENSMUST00000107914.10	1164	9	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	2.31503239718152	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGGCCCTTTAAGCCT	9769	False	NA	-14	True	AATAAA	-16	NA	43523595	43514710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_43514862_43518229_43518300_43518401_43518465_43519002_43519079_43519226_43519298_43519388_43519507_43519610_43519745_43522674_43522801_43523240
transcript_38647.known	chr4	-	3544	17	FSM	ENSMUSG00000028467.16	ENSMUST00000030189.14	3544	17	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_8	9.51314879522022	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTAGTGTGGTGTGTCTGAG	-7	True	NA	-1	True	AATAAA	-16	NA	43578873	43566927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_43567468_43567724_43567917_43567999_43568116_43568195_43568339_43568437_43568545_43568654_43568807_43568885_43568994_43569180_43569286_43569488_43569662_43569829_43569956_43570036_43570191_43570345_43570449_43570671_43570912_43571188_43571408_43573750_43573867_43574027_43574120_43578015
transcript_3865.known	chr10	-	875	5	FSM	ENSMUSG00000019791.13	ENSMUST00000161074.8	875	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	42.7492689995981	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTTGTCTTCAGACACAC	NA	False	NA	NA	False	NA	NA	NA	30494475	30484136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_30484420_30486312_30486440_30487643_30487714_30490708_30490827_30494198
transcript_38655.known	chr4	-	937	2	FSM	ENSMUSG00000028465.17	ENSMUST00000123985.2	937	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATCTTCATATTTTTAAAA	NA	False	NA	-30	True	NA	NA	NA	43562691	43559342	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_43559718_43562129
transcript_38656.known	chr4	-	1549	7	FSM	ENSMUSG00000066196.12	ENSMUST00000084646.11	1549	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTAATTCATTGATTCT	-3	True	NA	NA	False	CATAAA	-17	NA	43653552	43651334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_43651655_43651746_43651810_43651927_43652043_43652116_43652163_43652344_43652520_43652640_43653422_43653503
transcript_38657.nnic	chr4	-	576	5	NNC	ENSMUSG00000028470.11	novel	564	5	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_3	311.572924850668	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTATCCCTGTCTTAAA	5526	False	NA	-5	True	AATAAA	-16	NA	43656489	43654226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_43654412_43654512_43654586_43654715_43654762_43654905_43655047_43656358
transcript_38658.known	chr4	-	610	5	FSM	ENSMUSG00000028470.11	ENSMUST00000030192.5	610	5	0	0	0	0	multi-exon	FALSE	canonical	3	693	junction_3	25.1433390781734	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGTATCCCTGTCTTA	-12	True	NA	-7	True	AATAAA	-14	NA	43656466	43654228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_43654412_43654512_43654586_43654715_43654821_43654905_43655047_43656358
transcript_3866.known	chr10	-	509	5	FSM	ENSMUSG00000019791.13	ENSMUST00000019925.7	509	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	90.3562394082445	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATGGACAAGTTCCTTAC	NA	False	NA	-32	True	AATAAA	-8	NA	30494333	30484378	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_30484420_30486312_30486458_30487643_30487714_30490708_30490827_30494198
transcript_38661.nnic	chr4	-	666	5	NNC	ENSMUSG00000028470.11	novel	610	5	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	311.576134355634	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTATCCCTGTCTTAAA	5526	False	NA	-5	True	AATAAA	-16	NA	43656489	43654226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_43654412_43654512_43654617_43654715_43654821_43654905_43655047_43656358
transcript_38663.known	chr4	-	600	5	FSM	ENSMUSG00000028470.11	ENSMUST00000151238.8	600	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	305.186316043167	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTATCCCTGTCTTAAA	11	True	NA	-5	True	AATAAA	-16	NA	43656443	43654226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_43654423_43654512_43654586_43654715_43654821_43654905_43655047_43656358
transcript_38665.known	chr4	-	398	2	FSM	ENSMUSG00000028470.11	ENSMUST00000134082.2	398	2	0	0	0	0	multi-exon	FALSE	canonical	3	745	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTGTATCCCTGTCTTA	7288	False	NA	-7	True	AATAAA	-14	NA	43654727	43654228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_43654412_43654512
transcript_38667.known	chr4	+	2320	5	FSM	ENSMUSG00000028480.15	ENSMUST00000030202.14	2320	5	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_4	22.0567450001128	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTCCTCTAATGCGATT	NA	False	NA	36	True	AATAAA	-21	NA	43957400	43979118	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_43957774_43968111_43968221_43968571_43968676_43970499_43970578_43977462
transcript_38670.known	chr4	+	1099	6	FSM	ENSMUSG00000028478.19	ENSMUST00000107849.10	1099	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	631.636794368409	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	0	True	NA	21	True	AATAAA	-21	NA	44012677	44032846	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_44013009_44018812_44018851_44019873_44019992_44025448_44025561_44030214_44030269_44032400
transcript_38671.known	chr4	+	1031	5	FSM	ENSMUSG00000028478.19	ENSMUST00000107845.4	1031	5	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	565.255860208455	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATGAAGCATCTTTAATT	8	True	NA	21	True	AATAAA	-21	NA	44012685	44032846	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_44013003_44018812_44018851_44019873_44019992_44025448_44025561_44032400
transcript_38673.known	chr4	-	2920	12	FSM	ENSMUSG00000028479.19	ENSMUST00000102936.9	2920	12	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_9	6.79693659727954	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGATATCTGGTCCCAGAA	240	False	NA	-6	True	NA	NA	NA	44072778	44036825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_44037354_44038946_44039064_44040253_44040437_44041662_44041885_44042162_44042293_44044758_44044970_44045902_44045991_44052770_44052984_44055204_44055358_44059775_44060228_44066754_44066961_44072361
transcript_38674.nic	chr4	-	3096	3	ISM	ENSMUSG00000028479.19	ENSMUST00000102936.9	2920	12	89	20840	47	2034	5prime_fragment	FALSE	canonical	3	64	junction_2	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTGTGTGTCTATGTGC	329	False	44072721	NA	False	AATAAA	-29	NA	44072689	44057665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_44060228_44066754_44066961_44072361
transcript_38676.known	chr4	+	2955	18	FSM	ENSMUSG00000035683.14	ENSMUST00000045607.12	2955	18	0	0	0	0	multi-exon	FALSE	canonical	2	288	junction_12	49.6985375708199	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATAGCACTGTTTCT	NA	False	NA	NA	False	ATTAAA	-11	NA	44300875	44364675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44324199_44324269_44325640_44325740_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
transcript_38678.nnic	chr4	+	2396	16	NIC	ENSMUSG00000035683.14	novel	2955	18	NA	NA	12	-379	combination_of_known_splicesites	FALSE	canonical	2	9	junction_8	119.239926199239	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGAGACTATTTGGAGTGT	NA	False	NA	26	True	AATAAA	-27	NA	44300887	44364296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_44301073_44303570_44303667_44306031_44306118_44306989_44307107_44308905_44309050_44310289_44310359_44312163_44312257_44318023_44318123_44332879_44332967_44340625_44340746_44344912_44345024_44347123_44347356_44349843_44349941_44350941_44351111_44360871_44360976_44363709
transcript_38679.nic	chr4	+	592	2	ISM	ENSMUSG00000035683.14	ENSMUST00000045607.12	2955	18	12	60698	12	-14093	5prime_fragment	FALSE	canonical	3	522	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAATTTATTTTAGTGT	NA	False	NA	NA	False	NA	NA	NA	44300887	44303977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_44301073_44303570
transcript_38681.known	chr4	+	2503	9	FSM	ENSMUSG00000035649.18	ENSMUST00000107824.9	2503	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	42.9270820694815	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTAAATAAATGTGTTTA	-10	True	NA	NA	False	AATAAA	-14	NA	44756567	44932203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_44756693_44761849_44762475_44893532_44893571_44894915_44895042_44895818_44895990_44908450_44908487_44925974_44926071_44929117_44929236_44931035
transcript_38683.known	chr4	+	437	2	FSM	ENSMUSG00000035649.18	ENSMUST00000143385.2	437	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTTCTCATTCTAATAAA	-7	True	NA	NA	False	AAGAAA	-42	NA	44756638	44762228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_44756697_44761849
transcript_38684.known	chr4	+	1280	9	FSM	ENSMUSG00000035637.15	ENSMUST00000045078.13	1280	9	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_3	33.5326333591622	264	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTTTGTGTTTGCTGAC	-31	True	NA	13	True	NA	NA	NA	44981394	44990734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_44981535_44982878_44983010_44983873_44983947_44984429_44984547_44985306_44985396_44986285_44986391_44987215_44987352_44988919_44989051_44990376
transcript_3869.known	chr10	+	858	6	FSM	ENSMUSG00000000295.14	ENSMUST00000000304.14	858	6	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_4	15.6025638918737	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCTGTCTTCTGTTTTGC	NA	False	NA	20	True	ATTAAA	-27	NA	31189378	31204200	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_31189480_31190510_31190633_31192288_31192392_31196263_31196333_31202017_31202157_31203876
transcript_38691.known	chr4	+	2986	12	FSM	ENSMUSG00000028318.15	ENSMUST00000133157.8	2986	12	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	16.5753974809925	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATGCTGACGACAATAT	5049	False	NA	33	True	ATTAAA	-15	NA	45018582	45033692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_45018793_45019273_45019378_45022207_45022285_45023192_45023279_45025769_45025829_45026763_45026909_45027363_45027472_45028002_45028100_45029337_45029472_45030752_45030835_45031366_45031499_45031940
transcript_38695.known	chr4	+	1470	12	FSM	ENSMUSG00000028318.15	ENSMUST00000107814.10	1470	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	55.1102576283923	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGAAAGAGCAACTGAC	15	True	NA	NA	False	AAAACA	-3	NA	45018662	45036565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_45018793_45019273_45019378_45022207_45022285_45023192_45023279_45025769_45025829_45026763_45026909_45027363_45027472_45028002_45028100_45029337_45029472_45030752_45030835_45031366_45031499_45036249
transcript_38696.known	chr4	-	679	3	FSM	ENSMUSG00000078713.9	ENSMUST00000107808.3	679	3	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_2	2	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGGTTTTGTGTTTT	-10	True	NA	NA	False	AATAAA	-14	NA	45108108	45105211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_45105645_45106838_45106889_45107912
transcript_38697.known	chr4	-	639	2	FSM	ENSMUSG00000078713.9	ENSMUST00000107810.3	639	2	0	0	0	0	multi-exon	FALSE	canonical	3	2176	junction_1	0	1309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGGTTTTGTGTTTTTAAT	-16	True	NA	NA	False	AATAAA	-18	NA	45108114	45105207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_45105645_45107912
transcript_38698.known	chr4	-	442	2	FSM	ENSMUSG00000078713.9	ENSMUST00000107807.2	442	2	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCATGAACTCCACCCCT	-10	True	NA	NA	False	AAAAAG	-26	NA	45108108	45105394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_45105645_45107916
transcript_38699.known	chr4	-	738	3	FSM	ENSMUSG00000078713.9	ENSMUST00000107809.9	738	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	3	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGCGTGGTTTTGTGTTTT	60	False	NA	NA	False	AATAAA	-14	NA	45108038	45105211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_45105645_45106614_45106794_45107912
transcript_387.known	chr1	-	2763	13	FSM	ENSMUSG00000025920.20	ENSMUST00000027052.13	2763	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	35.7596140918774	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTATGAGTTGTTCCTT	NA	False	NA	NA	False	AGTAAA	-13	NA	16589530	16299033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_16300091_16301226_16301316_16415927_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16533258_16533419_16579565_16579633_16589396
transcript_38705.known	chr4	+	2064	9	FSM	ENSMUSG00000035601.10	ENSMUST00000044673.9	2064	9	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	41.8103979292233	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGGAAAAAAAAACTGAATA	NA	False	NA	NA	False	ATTAAA	-25	NA	45297126	45316131	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_45297196_45300416_45300628_45301235_45301351_45304263_45304389_45305743_45305897_45307891_45307971_45308496_45308565_45314282_45314407_45315011
transcript_3871.known	chr10	+	819	7	FSM	ENSMUSG00000000295.14	ENSMUST00000159194.3	819	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	236.595764027075	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAGCTGTTAAACACTCCA	NA	False	NA	0	True	ATTAAA	-7	NA	31189467	31204180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_31189480_31190510_31190633_31192288_31192392_31196263_31196333_31201201_31201272_31202017_31202157_31203876
transcript_38712.known	chr4	-	1077	4	FSM	ENSMUSG00000028322.12	ENSMUST00000030003.10	1077	4	0	0	0	0	multi-exon	FALSE	canonical	3	481	junction_1	46.9065264352651	253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATTTGTAGTTCTACAGT	-22	True	NA	-1	True	AATAAA	-17	NA	45320629	45316612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_45317029_45317677_45317830_45319549_45319700_45320270
transcript_38719.known	chr4	-	825	3	FSM	ENSMUSG00000028322.12	ENSMUST00000130843.2	825	3	0	0	0	0	multi-exon	FALSE	canonical	3	580	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAATCTGTGCTGCATGTA	3	True	NA	NA	False	NA	NA	NA	45320604	45317488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_45317830_45319549_45319700_45320270
transcript_3872.known	chr10	-	969	8	FSM	ENSMUSG00000000296.9	ENSMUST00000213528.2	969	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	226.139563192327	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTGTTCTGAATTCTTGT	NA	False	NA	55	True	AATAGA	-19	NA	31321851	31208622	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_31208966_31214180_31214242_31217135_31217175_31219007_31219023_31222606_31222709_31233867_31234017_31255210_31255327_31321707
transcript_38720.known	chr4	-	4438	3	FSM	ENSMUSG00000045973.19	ENSMUST00000116341.4	4438	3	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	5.5	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCGGTTGCTCTTTGGAG	-22	True	NA	1	True	ATTAAA	-17	NA	45408766	45395922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_45400180_45404726_45404836_45408694
transcript_38721.known	chr4	-	1005	2	FSM	ENSMUSG00000045973.19	ENSMUST00000132815.3	1005	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATCATTATGTGAGATG	-16	True	NA	NA	False	NA	NA	NA	45408760	45399240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_45400180_45408694
transcript_38722.known	chr4	+	2298	2	FSM	ENSMUSG00000035561.6	ENSMUST00000044384.5	2298	2	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTATCACTGTTTTCCTT	-15	True	NA	12	True	ATTAAA	-26	NA	45799021	45804604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_45799170_45802454
transcript_38723.known	chr4	+	3010	23	FSM	ENSMUSG00000028330.9	ENSMUST00000030014.9	3010	23	0	0	0	0	multi-exon	TRUE	canonical	3	296	junction_19	36.3529529761015	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGGGAGTCATGGTTTAT	27	False	NA	21	True	AATAAA	-21	NA	46138612	46172403	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_46138887_46144784_46144874_46145373_46145475_46147378_46147536_46149861_46149970_46150638_46150761_46152015_46152086_46152909_46153126_46155749_46155848_46156759_46156824_46157822_46157934_46159658_46159724_46161260_46161324_46162091_46162167_46162960_46163065_46165165_46165289_46166737_46166841_46167301_46167396_46168450_46168555_46169128_46169244_46169944_46170074_46170471_46170586_46171892
transcript_38727.known	chr4	-	1547	6	FSM	ENSMUSG00000035495.16	ENSMUST00000160008.2	1547	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_5	18.8722017793367	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAGAAAGAGTAACATTTA	18	True	NA	NA	False	NA	NA	NA	46138413	46123404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_46124149_46124899_46125026_46129226_46129348_46131842_46132157_46135386_46135595_46138379
transcript_38728.nic	chr4	-	578	2	ISM	ENSMUSG00000035495.16	ENSMUST00000160008.2	1547	6	-49	11695	-7	402	5prime_fragment	FALSE	canonical	3	160	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAGAAAGAAAAAAAGA	-31	True	NA	NA	False	NA	NA	NA	46138462	46135099	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_46135595_46138379
transcript_38729.known	chr4	-	1527	5	FSM	ENSMUSG00000028331.13	ENSMUST00000030015.6	1527	5	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	13.5346776836392	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTGTCTGAGCTTTGAAT	-14	True	NA	NA	False	ATTAAA	-27	NA	46389437	46379863	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_46380311_46382058_46382686_46386093_46386252_46387567_46387743_46389317
transcript_38735.known	chr4	+	1716	7	FSM	ENSMUSG00000028333.11	ENSMUST00000102926.5	1716	7	0	0	0	0	multi-exon	FALSE	canonical	3	5377	junction_1	313.520688666988	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTAGTTGTACTCTCACAT	4	True	NA	8	True	AATAAA	-20	NA	46450901	46472657	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_46451350_46460089_46460240_46463806_46463930_46468558_46468788_46469882_46470008_46471397_46471468_46472086
transcript_38738.nnic	chr4	+	1086	6	NNC	ENSMUSG00000028334.11	novel	2179	6	NA	NA	-6	-958	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	361.736146935857	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCTGCTGCTGTCCAGT	NA	False	NA	12	True	AATAAA	-25	NA	46489241	46502674	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_46489491_46492705_46492922_46499042_46499143_46500065_46500221_46500712_46500914_46502509
transcript_3874.known	chr10	-	1308	7	FSM	ENSMUSG00000000296.9	ENSMUST00000000305.7	1308	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	224.403654159196	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTGGATCTTTTATTTC	NA	False	NA	-3	True	ATTAAA	-17	NA	31321954	31208371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_31208966_31214180_31214242_31217135_31217175_31222606_31222709_31233867_31234017_31255210_31255327_31321707
transcript_38740.known	chr4	+	2179	6	FSM	ENSMUSG00000028334.11	ENSMUST00000030018.5	2179	6	0	0	0	0	multi-exon	FALSE	canonical	3	811	junction_3	76.1377698648969	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTACTTTGATGTGTGTGT	NA	False	NA	14	True	NA	NA	NA	46489247	46503632	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_46489491_46492705_46492922_46499042_46499143_46500065_46500221_46500712_46500980_46502434
transcript_38743.known	chr4	+	2861	9	FSM	ENSMUSG00000007613.16	ENSMUST00000044234.14	2861	9	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_2	41.6435769357052	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGCCACGTTGATACTAGG	13	False	NA	NA	False	AATGAA	-4	NA	47353306	47412133	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_47353397_47383748_47383995_47393258_47393490_47396354_47396586_47402802_47402971_47403369_47403527_47405528_47405654_47406921_47407053_47410651
transcript_38746.known	chr4	+	5756	9	FSM	ENSMUSG00000007613.16	ENSMUST00000007757.15	5756	9	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_2	37.2623721064561	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCAACATTCTTTTCTGGA	0	True	NA	33	True	AATAAA	-24	NA	47353221	47414931	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_47353397_47383748_47383995_47393246_47393490_47396354_47396586_47402802_47402971_47403369_47403527_47405528_47405654_47406921_47407053_47410651
transcript_38747.known	chr4	-	3021	2	FSM	ENSMUSG00000039740.7	ENSMUST00000044148.3	3021	2	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	0	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCAGTTTATGGTTGCG	-17	True	NA	-2	True	AATAAA	-15	NA	47474333	47469832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_47472459_47473938
transcript_38748.known	chr4	+	564	4	FSM	ENSMUSG00000053317.12	ENSMUST00000065678.6	564	4	0	0	0	0	multi-exon	FALSE	canonical	3	2329	junction_2	60.4225859169308	1325	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTGCCTGTGCTTTATT	-22	True	NA	NA	False	AATAAA	-25	NA	47474657	47483242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_47474754_47474911_47475010_47480130_47480233_47482974
transcript_38751.known	chr4	+	5770	8	FSM	ENSMUSG00000061455.14	ENSMUST00000107720.9	5770	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	8.24621125123532	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAATTCCTGTTGTATATT	5	True	NA	NA	False	AATAAA	-25	NA	48124925	48186507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_48124959_48131764_48131950_48140419_48140486_48158810_48159034_48166927_48167044_48167205_48167257_48180669_48180757_48181498
transcript_38753.nic	chr4	+	1604	8	NIC	ENSMUSG00000061455.14	novel	1531	9	NA	NA	1	0	intron_retention	FALSE	canonical	2	7	junction_1	13.490737563232	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTCTTCATTGTGACAT	3	True	NA	13	True	TATAAA	-29	NA	48124923	48182231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_48125067_48131764_48131950_48140419_48140486_48158810_48159034_48166927_48167044_48167205_48167257_48180669_48180757_48181498
transcript_38755.known	chr4	-	2624	12	FSM	ENSMUSG00000028343.11	ENSMUST00000030028.5	2624	12	0	0	0	0	multi-exon	TRUE	canonical	3	625	junction_9	43.7020339182862	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCAGCTTCCAGTTCTTA	20	True	NA	NA	False	AATAAA	-29	NA	48279558	48193322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48236872_48236989_48241295_48241336_48243476_48243550_48279383
transcript_38764.nnic	chr4	-	1402	11	NIC	ENSMUSG00000028343.11	novel	2624	12	NA	NA	-61	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_8	206.167019670945	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTTTTTAATTTTTTTCC	NA	False	NA	-28	True	AATAAA	-14	NA	48279619	48194489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_48194710_48196802_48196906_48204143_48204286_48205117_48205230_48208696_48208814_48211649_48211708_48218080_48218197_48219342_48219528_48241295_48241336_48243476_48243550_48279383
transcript_38766.known	chr4	+	5633	17	FSM	ENSMUSG00000028344.13	ENSMUST00000030029.10	5633	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	2.59506743650334	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATCCCTGATGCCTTTAT	-22	True	NA	12	True	AATAAA	-19	NA	48279801	48431954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_48279976_48283225_48283356_48307682_48307850_48382104_48382279_48385104_48385273_48389958_48390140_48392583_48392694_48396234_48396407_48397504_48397661_48398049_48398280_48402832_48402940_48407597_48407811_48415905_48416199_48421446_48422150_48425994_48426225_48427033_48427109_48429604
transcript_3877.known	chr10	-	827	6	FSM	ENSMUSG00000000296.9	ENSMUST00000213639.2	827	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	219.239230066154	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTAAAAATAGACAACCTGG	NA	False	NA	25	True	NA	NA	NA	31321793	31208652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_31208966_31214180_31214242_31222606_31222709_31233867_31234017_31255210_31255327_31321707
transcript_38770.known	chr4	-	3102	15	FSM	ENSMUSG00000028345.16	ENSMUST00000030030.15	3102	15	0	0	0	0	multi-exon	FALSE	canonical	3	662	junction_12	54.2776309771327	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATGAGCTTCCTTCATA	NA	False	NA	-3	True	ATTAAA	-18	NA	48473459	48430857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468280_48468994_48469883_48470073_48473265
transcript_38771.nic	chr4	-	2660	15	NIC	ENSMUSG00000028345.16	novel	3102	15	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_12	196.22390636355	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCATGAGCTTCCTTCATA	NA	False	NA	-3	True	ATTAAA	-18	NA	48473490	48430857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_48431084_48433107_48433319_48434901_48435084_48436436_48436518_48451925_48452060_48452892_48452982_48456733_48456912_48458537_48458714_48459250_48459387_48459863_48460103_48462768_48462882_48467663_48467905_48468753_48468994_48469883_48470073_48473265
transcript_38774.known	chr4	-	942	2	FSM	ENSMUSG00000028345.16	ENSMUST00000132911.2	942	2	0	0	0	0	multi-exon	FALSE	canonical	3	823	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAATAACTGAAG	4	True	NA	NA	False	TTTAAA	-35	NA	48473343	48469208	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_48470073_48473265
transcript_38777.nnic	chr4	+	1337	4	NNC	ENSMUSG00000039693.12	novel	1378	3	NA	NA	54	-60	at_least_one_novel_splicesite	FALSE	canonical	1	8	junction_1	134.650164005346	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTGTGAGTGTTGGTTT	4	True	NA	5	True	NA	NA	NA	48540132	48561517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_48540272_48549924_48549998_48552379_48552831_48560843
transcript_38781.known	chr4	+	1378	3	FSM	ENSMUSG00000039693.12	ENSMUST00000064807.9	1378	3	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	89	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTGACTTTATCTTTT	2	True	NA	65	True	GATAAA	-14	NA	48540078	48561577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_48540272_48552379_48552831_48560843
transcript_38783.known	chr4	+	1597	3	FSM	ENSMUSG00000039693.12	ENSMUST00000107704.2	1597	3	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	75.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGTTACACTGTGTATGTT	38	True	NA	15	True	NA	NA	NA	48540498	48561919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_48540569_48552379_48552831_48560843
transcript_38784.known	chr4	+	1589	3	FSM	ENSMUSG00000039693.12	ENSMUST00000061135.8	1589	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	140.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATAGTTACACTGTGTATGT	18	False	NA	14	True	NA	NA	NA	48539934	48561918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_48539998_48552379_48552831_48560843
transcript_38786.known	chr4	+	1426	10	FSM	ENSMUSG00000028347.15	ENSMUST00000130834.8	1426	10	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_4	69.1178989163971	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAAAAAATCTAGAGGAC	248	False	NA	NA	False	AGTAAA	-24	NA	48585550	48662470	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_48585642_48604580_48604691_48610412_48610543_48614956_48614984_48617231_48617332_48636839_48636989_48638979_48639046_48650294_48650419_48658773_48658933_48662000
transcript_38787.known	chr4	+	1224	10	FSM	ENSMUSG00000028347.15	ENSMUST00000123476.8	1224	10	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_4	114.355952842942	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGCGGACTTTTATATGCG	62	False	NA	NA	False	NA	NA	NA	48585364	48662085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_48585642_48604580_48604691_48610412_48610543_48614956_48614984_48617234_48617332_48636839_48636989_48638979_48639046_48650294_48650419_48658773_48658933_48662000
transcript_38791.known	chr4	-	2114	2	FSM	ENSMUSG00000044018.4	ENSMUST00000057829.4	2114	2	0	0	0	0	multi-exon	FALSE	canonical	3	1281	junction_1	0	391	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTTTTAAAGTGTTATT	NA	False	NA	0	True	AATAAA	-21	NA	49521093	49512595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_49514578_49520961
transcript_38792.known	chr4	+	2835	4	FSM	ENSMUSG00000039634.13	ENSMUST00000042964.13	2835	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	22.553639765383	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAATAAAAAAAATGACCT	NA	False	NA	NA	False	AAGAAA	-35	NA	49521175	49531517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_49521252_49521422_49521596_49522397_49522483_49529016
transcript_38793.known	chr4	+	2965	3	FSM	ENSMUSG00000039634.13	ENSMUST00000107696.2	2965	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	6.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAATAAAAAAAATGACCT	-39	True	NA	NA	False	AAGAAA	-35	NA	49521216	49531517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_49521596_49522397_49522483_49529016
transcript_38794.known	chr4	-	2989	2	FSM	ENSMUSG00000039611.3	ENSMUST00000042750.3	2989	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAGAAACAAAGA	0	True	NA	NA	False	NA	NA	NA	49597876	49584505	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_49587242_49597623
transcript_38795.known	chr4	+	4154	21	FSM	ENSMUSG00000028309.15	ENSMUST00000029989.11	4154	21	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	16.7996279720713	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTTGTGGTGTTCT	-13	True	NA	5	True	ATTAAA	-17	NA	49632065	49656887	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_49632212_49632364_49632513_49633253_49633411_49637905_49638074_49638186_49638335_49638624_49638808_49642065_49642185_49644483_49644631_49645618_49645697_49645885_49646006_49648285_49648466_49649269_49649406_49649725_49649848_49649962_49650328_49651430_49651549_49652521_49652672_49653064_49653278_49654190_49654317_49654446_49654588_49655410_49655513_49655800
transcript_38798.known	chr4	+	5404	25	FSM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_1	46.9361083164006	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTAGTACTACAGTTT	-19	True	NA	21	True	ATTAAA	-21	NA	52439242	52488260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_52439411_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261_52457496_52458414_52458575_52459020_52459139_52460157_52460297_52461049_52461170_52462802_52463008_52465932_52466069_52467789_52467915_52469771_52469966_52470765_52470910_52474920_52475116_52476643_52476845_52478395_52478513_52481669_52481831_52484039_52484188_52486496
transcript_38799.known	chr4	+	5328	25	FSM	ENSMUSG00000028312.20	ENSMUST00000117280.8	5328	25	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_1	79.8595990195014	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTAGTACTACAGTTT	-19	True	NA	21	True	ATTAAA	-21	NA	52439242	52488260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_52439335_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261_52457496_52458414_52458575_52459020_52459139_52460157_52460297_52461049_52461170_52462802_52463008_52465932_52466069_52467789_52467915_52469771_52469966_52470765_52470910_52474920_52475116_52476643_52476845_52478395_52478513_52481669_52481831_52484039_52484188_52486496
transcript_388.known	chr1	-	3907	12	FSM	ENSMUSG00000025920.20	ENSMUST00000128957.9	3907	12	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_10	22.8368268627019	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTGGTATGATTTAAGCC	NA	False	NA	NA	False	NA	NA	NA	16589471	16413709	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16533258_16533419_16556243_16556375_16579565_16579633_16589396
transcript_3880.known	chr10	-	1103	5	FSM	ENSMUSG00000000296.9	ENSMUST00000214644.2	1103	5	0	0	0	0	multi-exon	FALSE	canonical	3	404	junction_1	42.7346463656832	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCTGGATCTTTTATTT	NA	False	NA	-4	True	ATTAAA	-16	NA	31321850	31208372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_31208966_31222606_31222709_31233867_31234017_31255210_31255327_31321707
transcript_38803.nic	chr4	+	2671	18	ISM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	-14	18312	-14	11374	5prime_fragment	FALSE	canonical	3	347	junction_1	37.9264449284862	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAAAGAAAAACAACAGGTA	0	True	NA	NA	False	AAGAAA	-2	NA	52439228	52469948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_52439411_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261_52457496_52458414_52458575_52459020_52459139_52460157_52460297_52461049_52461170_52462802_52463008_52465932_52466069_52467789_52467915_52469771
transcript_38805.nic	chr4	+	1280	10	ISM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	-14	30976	-14	-1290	5prime_fragment	FALSE	canonical	3	347	junction_1	40.7470365505802	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GGAAAAAGAAGTTAAGAAGA	0	True	NA	NA	False	NA	NA	NA	52439228	52457284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_52439411_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819_52451054_52451227_52451378_52457261
transcript_38807.nic	chr4	+	1057	8	ISM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	-14	37257	-14	-325	5prime_fragment	FALSE	canonical	3	347	junction_1	45.1758468969553	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGCTCTCAATTGTGAA	0	True	NA	NA	False	AGTAAA	-36	NA	52439228	52451003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_52439411_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320_52449432_52449610_52449656_52450819
transcript_38809.nic	chr4	+	816	6	ISM	ENSMUSG00000028312.20	ENSMUST00000102915.10	5404	25	-14	38841	-14	1643	5prime_fragment	FALSE	canonical	3	347	junction_1	48.8122935334942	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATAAAAACGGTAATTCA	0	True	NA	NA	False	AAAAAG	-16	NA	52439228	52449419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_52439411_52440200_52440424_52442252_52442403_52445951_52446075_52447712_52447752_52449320
transcript_38811.known	chr4	+	1552	6	FSM	ENSMUSG00000015247.11	ENSMUST00000015391.10	1552	6	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_3	32.5785205311721	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTATCAAGTGAGTCTT	NA	False	NA	10	True	AATAAA	-21	NA	53011879	53022060	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_53012048_53015014_53015226_53017048_53017208_53020181_53020332_53021110_53021198_53021283
transcript_38814.known	chr4	+	848	5	FSM	ENSMUSG00000015247.11	ENSMUST00000107665.4	848	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	242.862615484557	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTTACTCCGTGCCCTG	2	True	NA	NA	False	NA	NA	NA	53011949	53021576	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_53012048_53015014_53015226_53017048_53017208_53021110_53021198_53021283
transcript_38818.known	chr4	+	2350	4	FSM	ENSMUSG00000054752.17	ENSMUST00000107643.8	2350	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	1.69967317119759	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAGA	7	True	NA	NA	False	NA	NA	NA	53631489	53651790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_53631613_53646986_53647083_53647669_53647802_53649791
transcript_38820.known	chr4	+	6080	10	FSM	ENSMUSG00000028414.18	ENSMUST00000128667.8	6080	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	6.81501610008696	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTGTGTTTGTTTTTGA	1326	False	NA	5	True	AATAAA	-18	NA	53713997	53765785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_53714196_53720006_53720210_53729979_53730040_53731131_53731336_53734849_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748497_53761173
transcript_38821.known	chr4	+	6241	10	FSM	ENSMUSG00000028414.18	ENSMUST00000221657.2	6241	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	14.3819159423506	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTTGTGTTTGTTTTTGA	17	True	NA	5	True	AATAAA	-18	NA	53714187	53765785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_53714547_53720006_53720210_53729979_53730040_53731131_53731336_53734849_53735128_53737526_53737660_53744618_53744749_53747008_53747143_53748368_53748497_53761173
transcript_38822.known	chr4	+	2862	6	FSM	ENSMUSG00000028420.14	ENSMUST00000030127.13	2862	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_3	9.52050418832952	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAAGGGGTATTCTTCTTC	-16	True	NA	NA	False	ATTAAA	-31	NA	53826044	53862019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_53826221_53840626_53840784_53848865_53849051_53850473_53850562_53854311_53854430_53859881
transcript_38826.known	chr4	+	689	3	FSM	ENSMUSG00000028420.14	ENSMUST00000151206.2	689	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	61	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTTTATGACTCATG	-4	True	NA	NA	False	NA	NA	NA	53826056	53847844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_53826221_53840626_53840784_53847476
transcript_38828.known	chr4	+	3810	10	FSM	ENSMUSG00000028426.11	ENSMUST00000030134.9	3810	10	0	0	0	0	multi-exon	FALSE	canonical	3	1075	junction_8	117.532764016184	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCATTTCTCATTTTTT	NA	False	NA	30	True	TATAAA	-20	NA	55350042	55392237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_55350428_55366776_55366859_55368044_55368125_55370203_55370473_55378233_55378290_55380988_55381117_55382479_55382616_55383586_55383715_55385409_55385602_55389883
transcript_38830.nic	chr4	+	2155	10	NIC	ENSMUSG00000028426.11	novel	3810	10	NA	NA	3	-1475	combination_of_known_junctions	FALSE	canonical	3	95	junction_1	367.852963110447	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATTGCATGTTTGCTTTTG	-15	True	NA	22	True	AGTAAA	-14	NA	55350045	55390762	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_55350251_55366776_55366859_55368044_55368125_55370203_55370473_55378233_55378290_55380988_55381117_55382479_55382616_55383586_55383715_55385409_55385602_55389883
transcript_38831.nic	chr4	+	2600	10	NIC	ENSMUSG00000028426.11	novel	3810	10	NA	NA	3	-1030	combination_of_known_junctions	FALSE	canonical	3	95	junction_1	367.852963110447	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACAGTGTTGGCTTTTATT	-15	True	NA	32	True	ATTAAA	-14	NA	55350045	55391207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_55350251_55366776_55366859_55368044_55368125_55370203_55370473_55378233_55378290_55380988_55381117_55382479_55382616_55383586_55383715_55385409_55385602_55389883
transcript_38834.known	chr4	-	3029	5	FSM	ENSMUSG00000003032.9	ENSMUST00000107619.3	3029	5	0	0	0	0	multi-exon	FALSE	canonical	3	1140	junction_2	61.7267162580353	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACAATCTCTTTGTTTTTT	9	True	NA	-7	True	AATAAA	-21	NA	55532466	55527142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_55528301_55529717_55529883_55529998_55530984_55531629_55531751_55531866
transcript_38837.nic	chr4	-	1445	2	ISM	ENSMUSG00000003032.9	ENSMUST00000107619.3	3029	5	2462	0	1766	0	intron_retention	FALSE	canonical	3	1256	junction_1	0	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGACAATCTCTTTGTTTTTT	3322	False	NA	-7	True	AATAAA	-21	NA	55530004	55527142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_55528301_55529717
transcript_38838.known	chr4	-	6160	37	FSM	ENSMUSG00000028431.12	ENSMUST00000030140.3	6160	37	0	0	0	0	multi-exon	TRUE	canonical	3	245	junction_24	36.3764927995411	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCTCTCTCTTCTGCTGA	NA	False	NA	NA	False	AATGAA	-15	NA	56802331	56749679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_56751720_56755303_56755380_56757116_56757272_56758212_56758341_56758963_56759076_56759800_56759915_56762248_56762310_56762840_56762904_56767814_56767877_56769013_56769216_56770980_56771079_56771432_56771557_56772380_56772530_56773015_56773102_56773198_56773337_56774521_56774602_56774687_56774767_56775016_56775091_56775424_56775541_56776689_56776796_56776884_56776939_56778958_56779063_56779656_56779764_56781025_56781218_56784537_56784638_56786587_56786753_56787740_56787972_56790130_56790225_56790887_56791012_56792026_56792118_56792384_56792482_56794089_56794176_56795505_56795587_56796503_56796586_56798657_56798811_56799974_56800138_56802158
transcript_38842.nnic	chr4	-	1484	11	NNC	ENSMUSG00000028431.12	novel	6160	37	NA	NA	13	-12617	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	95.5351244307558	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCTTCATCTCAGAATTGGA	9	False	56802327	NA	False	AATAAA	-15	NA	56802318	56789082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_56789436_56790130_56790225_56790887_56791012_56792026_56792118_56792384_56792482_56794089_56794176_56795505_56795587_56796503_56796586_56798657_56798811_56799974_56800138_56802158
transcript_38843.known	chr4	+	4275	6	FSM	ENSMUSG00000038827.12	ENSMUST00000045368.12	4275	6	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_2	10.8369737473153	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTTTCTGTGTACGTT	0	True	NA	13	True	AATAAA	-22	NA	56802348	56809601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_56802727_56803595_56803648_56804153_56804284_56805681_56805759_56805877_56805948_56806033
transcript_38846.known	chr4	+	4360	6	FSM	ENSMUSG00000038827.12	ENSMUST00000131520.8	4360	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	52.8189359983709	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGGCTTTCTGTGTACGTT	3	True	NA	13	True	AATAAA	-22	NA	56802351	56809601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_56802727_56803507_56803648_56804153_56804284_56805681_56805759_56805877_56805948_56806033
transcript_38847.known	chr4	-	3664	19	FSM	ENSMUSG00000038816.15	ENSMUST00000045142.15	3664	19	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_15	25.8110417562564	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATACCGACTGGCTTAAT	-17	True	NA	-6	True	AATAAA	-21	NA	56865188	56810934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56847809_56848000_56864976
transcript_38850.nic	chr4	-	2828	18	NIC	ENSMUSG00000038816.15	novel	3664	19	NA	NA	8	-555	combination_of_known_junctions	FALSE	canonical	3	86	junction_17	49.5178133688317	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTAGGATTTAAACCTTTT	-8	True	NA	-4	True	AATAAA	-19	NA	56846084	56811489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56816180_56816230_56816988_56817144_56817246_56817298_56822517_56822556_56826273_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56845963
transcript_38851.nic	chr4	-	1959	11	ISM	ENSMUSG00000038816.15	ENSMUST00000045142.15	3664	19	-26	15068	-26	0	5prime_fragment	FALSE	canonical	3	197	junction_7	32.0661815625122	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTGGATTTCCTACTGA	9403	False	NA	NA	False	AATAAA	-18	NA	56865214	56826002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56847809_56848000_56864976
transcript_38853.nic	chr4	-	1652	10	NIC	ENSMUSG00000038816.15	novel	1956	12	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_9	65.1103526690753	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTGGATTTCCTACTGA	-8	True	NA	NA	False	AATAAA	-18	NA	56846084	56826002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56845963
transcript_38854.nic	chr4	-	1685	10	NIC	ENSMUSG00000038816.15	novel	1956	12	NA	NA	-108	-83	combination_of_known_junctions	FALSE	canonical	3	86	junction_9	65.1103526690753	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGACAAAATTATTGTTT	NA	False	NA	NA	False	AATAAA	-17	NA	56846200	56826085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_56826425_56827251_56827345_56829483_56829643_56832905_56832993_56835177_56835379_56837731_56837903_56838965_56839056_56841560_56841681_56844446_56844635_56845963
transcript_38855.known	chr4	-	654	5	FSM	ENSMUSG00000038816.15	ENSMUST00000131231.2	654	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	112.62548557054	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAACACTGTGCTCAGGG	NA	False	NA	NA	False	NA	NA	NA	56814319	56812139	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_56812389_56812510_56812595_56813177_56813292_56813829_56813887_56814169
transcript_38859.known	chr4	+	6650	3	FSM	ENSMUSG00000038729.25	ENSMUST00000102903.8	6650	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	1	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTCTTTTTTTTTTTTCT	-6	True	NA	27	True	ATTAAA	-18	NA	57845246	57896982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_57845307_57854561_57857038_57892868
transcript_3886.nnic	chr10	-	2318	12	NNC	ENSMUSG00000039531.9	novel	2180	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	30.1971483520388	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGTTTCTTGTCTAT	NA	False	NA	-1	True	AATAAA	-20	NA	33827221	33795137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33826689_33826862_33827126
transcript_38860.known	chr4	-	2830	2	FSM	ENSMUSG00000052117.6	ENSMUST00000063816.6	2830	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTTTTTTCTTCTCAATT	-3	True	NA	NA	False	NA	NA	NA	57916297	57908482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_57910612_57915596
transcript_38864.known	chr4	-	1051	5	FSM	ENSMUSG00000028367.6	ENSMUST00000030051.6	1051	5	0	0	0	0	multi-exon	TRUE	canonical	3	4612	junction_4	90.890043459116	6036	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCATGAGTGTGACTGAT	24	False	NA	NA	False	AATAAA	-13	NA	57956411	57943372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_57943968_57945146_57945213_57950838_57950899_57951796_57951902_57956186
transcript_38871.known	chr4	-	3512	4	FSM	ENSMUSG00000038668.15	ENSMUST00000055018.11	3512	4	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_3	72.8941393772885	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATGTGTGGTTCTGGTCTG	401	False	NA	-5	True	AATAAA	-22	NA	58553357	58435254	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_58437635_58486476_58487225_58504621_58504782_58553133
transcript_38872.nic	chr4	-	3384	4	NIC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	73	0	combination_of_known_junctions	FALSE	canonical	3	105	junction_3	79.7927871983984	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGATGTGTGGTTCTGGTCTG	NA	False	NA	-5	True	AATAAA	-22	NA	58553825	58435254	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_58437635_58486476_58487225_58504621_58504782_58553729
transcript_38873.nic	chr4	-	2233	4	NIC	ENSMUSG00000038668.15	novel	3512	4	NA	NA	73	-1151	combination_of_known_junctions	FALSE	canonical	3	105	junction_3	79.7927871983984	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAAAGATTGCTGATAT	NA	False	NA	NA	False	NA	NA	NA	58553825	58436405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_58437635_58486476_58487225_58504621_58504782_58553729
transcript_38877.known	chr4	-	2296	10	FSM	ENSMUSG00000028378.7	ENSMUST00000030069.7	2296	10	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_9	57.656068390259	308	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGCTGTGCCTTCTCT	5	True	NA	NA	False	NA	NA	NA	58987119	58965438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_58966764_58968758_58968878_58970990_58971100_58973534_58973691_58975860_58975979_58978013_58978182_58981826_58981884_58982879_58982926_58984743_58984860_58987037
transcript_3888.known	chr10	-	2180	11	FSM	ENSMUSG00000039531.9	ENSMUST00000218055.2	2180	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_10	16.213882940246	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGTTTCTTGTCTAT	NA	False	NA	-1	True	AATAAA	-20	NA	33827255	33795137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827126
transcript_38881.known	chr4	+	1192	3	FSM	ENSMUSG00000038607.13	ENSMUST00000041160.13	1192	3	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_2	16.5	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTGTTTGGTGTCT	1876	False	NA	35	True	AATAAA	-35	NA	59035087	59041903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_59035319_59039226_59039359_59041074
transcript_38882.nic	chr4	+	885	2	ISM	ENSMUSG00000070972.14	ENSMUST00000153467.3	2393	5	16880	752	16880	305	3prime_fragment	FALSE	canonical	3	112	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGTGTGAAGTGTTTCT	2383	False	NA	9	True	TTTAAA	-2	NA	59020072	59022988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_59020530_59022560
transcript_38885.known	chr4	-	3295	17	FSM	ENSMUSG00000038578.16	ENSMUST00000040166.14	3295	17	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	14.4566971936885	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTATTTGGGTTTTGTGGT	31	False	NA	NA	False	TATAAA	-21	NA	59438633	59314682	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_59315410_59315711_59315806_59324867_59324908_59329462_59329722_59332936_59333034_59349825_59350013_59351637_59351730_59365721_59365915_59369530_59369641_59379598_59379786_59380860_59380959_59390572_59390753_59411269_59411450_59412169_59412323_59423994_59424151_59427950_59428065_59438205
transcript_3889.nic	chr10	-	2115	11	NIC	ENSMUSG00000039531.9	novel	2180	11	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_10	23.419863364247	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGTTTCTTGTCTAT	NA	False	NA	-1	True	AATAAA	-20	NA	33827262	33795137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827198
transcript_38892.known	chr4	-	2016	14	FSM	ENSMUSG00000028382.16	ENSMUST00000148331.9	2016	14	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_12	40.1538461538462	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGGGGGAAAAAATCAGGAAA	5	True	NA	NA	False	NA	NA	NA	59549314	59476647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_59477016_59477154_59477233_59481361_59481579_59482544_59482638_59485338_59485373_59485606_59485747_59488110_59488189_59493185_59493361_59494499_59494611_59501309_59501475_59514273_59514421_59517585_59517756_59524403_59524477_59549147
transcript_38894.known	chr4	+	2611	11	FSM	ENSMUSG00000028383.18	ENSMUST00000030078.12	2611	11	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	12.963024338479	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTATGTGCCTTTTATTTC	0	True	NA	20	True	NA	NA	NA	59581562	59618689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_59581776_59592154_59592319_59593236_59593336_59594395_59594511_59596862_59596967_59597256_59597356_59601372_59601568_59606471_59606544_59610509_59610876_59612681_59612811_59617634
transcript_38898.known	chr4	-	3237	5	FSM	ENSMUSG00000038544.15	ENSMUST00000095063.11	3237	5	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_4	41.7814252988095	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGTTTACTGCATATGTTAA	-28	True	NA	NA	False	NA	NA	NA	59783866	59769636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59782253_59782335_59783727
transcript_38901.known	chr4	-	1438	4	FSM	ENSMUSG00000038544.15	ENSMUST00000107526.8	1438	4	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_3	91.8416511659546	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTTACTTTGTAAGGATCCT	30	True	NA	-6	True	ATTAAA	-18	NA	59783808	59771296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_59772460_59773915_59774007_59775446_59775550_59783727
transcript_38904.nnic	chr4	-	1418	4	NNC	ENSMUSG00000038544.15	novel	1654	3	NA	NA	-12	-142	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	109.77552854196	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATTGGTTATTCAGTTTG	NA	False	NA	-3	True	NA	NA	NA	59783878	59774229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_59775313_59775446_59775550_59782253_59782335_59783727
transcript_38905.known	chr4	-	1654	3	FSM	ENSMUSG00000038544.15	ENSMUST00000128548.2	1654	3	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_2	17	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCCTTATATAATTATTTT	0	True	NA	NA	False	AATAAA	-20	NA	59783838	59774087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_59775550_59782253_59782335_59783727
transcript_38908.known	chr4	+	642	7	FSM	ENSMUSG00000078689.9	ENSMUST00000107521.8	642	7	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	4.92442890089805	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGAAGTGCAATCCTGGTT	16	False	NA	NA	False	NA	NA	NA	59964293	60007120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_59964368_60003977_60004112_60004813_60004888_60005471_60005583_60005921_60006024_60006188_60006235_60007019
transcript_38909.known	chr4	-	861	7	FSM	ENSMUSG00000110439.2	ENSMUST00000211875.2	861	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATATGTCTCTATGTCC	NA	False	NA	NA	False	AATAAA	-18	NA	60777462	60773587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_60773838_60774625_60774672_60774834_60774937_60775277_60775389_60776004_60776079_60776846_60776981_60777318
transcript_3891.known	chr10	-	2005	11	FSM	ENSMUSG00000039531.9	ENSMUST00000218880.2	2005	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	26.3901496774838	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGTTGGTTTTGGTTTC	NA	False	NA	-9	True	AATAAA	-12	NA	33827191	33795145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_33795367_33803494_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827126
transcript_38910.known	chr4	-	1776	4	FSM	ENSMUSG00000028389.13	ENSMUST00000221329.2	1776	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	10.3708994574027	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGGAAACCTGACAACTG	NA	False	NA	NA	False	NA	NA	NA	62126598	62109400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_62110927_62122755_62122888_62123260_62123346_62126565
transcript_38912.known	chr4	+	1820	4	FSM	ENSMUSG00000066152.12	ENSMUST00000084530.9	1820	4	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_3	15.369522511198	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGTTGGTCCGTTTC	NA	False	NA	9	True	AATAAA	-20	NA	62204685	62216648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_62204812_62210868_62210936_62214123_62214314_62215211
transcript_38913.known	chr4	-	4264	28	FSM	ENSMUSG00000066151.13	ENSMUST00000084527.10	4264	28	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_18	17.8933741789013	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTTCCTTTTTGGG	6994	False	NA	-1	True	NA	NA	NA	62278707	62218578	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_62219228_62221397_62221495_62222427_62223144_62223359_62223468_62224146_62224267_62225131_62225285_62226174_62226331_62230494_62230632_62232490_62232663_62239195_62239299_62240419_62240515_62241433_62241542_62242348_62242459_62244295_62244411_62246049_62246157_62247584_62247688_62250427_62250536_62251919_62251978_62252357_62252498_62254637_62254785_62255293_62255363_62256722_62256873_62258470_62258570_62258858_62258934_62263744_62263815_62264293_62264379_62270669_62270783_62278606
transcript_38916.nnic	chr4	-	2415	10	NNC	ENSMUSG00000066151.13	novel	3279	18	NA	NA	17628	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_9	34.5643075733435	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTTCCTTTTTGGG	NA	False	NA	-1	True	NA	NA	NA	62232903	62218578	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_62219228_62221397_62221495_62222427_62223144_62223359_62223468_62224146_62224267_62225131_62225285_62226174_62226331_62230494_62230632_62232490_62232663_62232796
transcript_38918.nic	chr4	-	2463	9	ISM	ENSMUSG00000066151.13	ENSMUST00000139308.2	3279	18	17714	0	17714	0	3prime_fragment	FALSE	canonical	3	79	junction_7	18.4013416630419	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTGTTCCTTTTTGGG	NA	False	NA	-1	True	NA	NA	NA	62232817	62218578	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_62219228_62221397_62221495_62222427_62223144_62223359_62223468_62224146_62224267_62225131_62225285_62226174_62226331_62230494_62230632_62232490
transcript_38919.known	chr4	-	1739	4	FSM	ENSMUSG00000066151.13	ENSMUST00000131977.2	1739	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	12.5698050899765	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAATAAAATAAATTAT	6995	False	NA	NA	False	NA	NA	NA	62278706	62262373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_62263815_62264293_62264379_62270669_62270783_62278606
transcript_38922.known	chr4	+	3718	5	FSM	ENSMUSG00000066150.13	ENSMUST00000084526.12	3718	5	0	0	0	0	multi-exon	FALSE	canonical	3	753	junction_3	40.1932830209228	351	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGTCTGTCTACACACT	NA	False	NA	23	True	AATAAA	-23	NA	62278963	62310006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_62279081_62303728_62303916_62304327_62304401_62306103_62306273_62306834
transcript_38924.known	chr4	-	819	4	FSM	ENSMUSG00000066149.12	ENSMUST00000084525.12	819	4	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_3	9.67241208569794	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGACGTCCTTAAAGGT	2664	False	NA	NA	False	AATAAA	-18	NA	62326879	62312819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_62313259_62320960_62321153_62322692_62322790_62326788
transcript_38927.known	chr4	-	654	3	FSM	ENSMUSG00000066149.12	ENSMUST00000107459.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	175	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGCTTAACTGATTTTTG	2681	False	NA	NA	False	NA	NA	NA	62326862	62312870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_62313259_62320960_62321153_62326788
transcript_38929.nnic	chr4	+	2782	14	NNC	ENSMUSG00000066148.4	novel	5223	14	NA	NA	-32	1147	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_7	81.1881444109878	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGGAAAAAATCCTAATTTA	NA	False	NA	34	True	ATTAAA	-22	NA	62327001	62342715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334849_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454
transcript_38930.known	chr4	+	5223	14	FSM	ENSMUSG00000066148.4	ENSMUST00000084524.4	5223	14	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_9	29.7191986640079	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGACAGCTTAGTCTAT	NA	False	NA	NA	False	AATAAA	-18	NA	62327033	62345227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_62327139_62327811_62327990_62329932_62330120_62332779_62332868_62333411_62333492_62333638_62333733_62334200_62334296_62334888_62334948_62336082_62336207_62337512_62337603_62340414_62340538_62340651_62340760_62340839_62340959_62341454
transcript_38939.known	chr4	-	1437	11	FSM	ENSMUSG00000028391.17	ENSMUST00000107452.8	1437	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_8	57	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATGATTTGAAAAATCAGG	NA	False	NA	96	True	NA	NA	NA	62389124	62371870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381711_62382163_62382307_62387073_62387171_62389055
transcript_3894.nnic	chr10	-	1966	10	NIC	ENSMUSG00000039531.9	novel	2180	11	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_9	24.3300352914654	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGTTTCTTGTCTAT	NA	False	NA	-1	True	AATAAA	-20	NA	33827230	33795137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33827198
transcript_38944.nnic	chr4	-	1398	11	NNC	ENSMUSG00000028391.17	novel	1440	11	NA	NA	-11	-100	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_3	56.331518708446	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGTGGCTTTGTGTT	NA	False	NA	-4	True	NA	NA	NA	62389144	62371970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_62372175_62374047_62374211_62375676_62375819_62377014_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62389055
transcript_38946.known	chr4	-	2549	11	FSM	ENSMUSG00000028391.17	ENSMUST00000120095.8	2549	11	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_10	54.6457683631587	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAATAAATAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	62389124	62370868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_62372175_62374047_62374211_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62388948
transcript_3895.nic	chr10	-	1999	10	NIC	ENSMUSG00000039531.9	novel	2180	11	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_5	26.0687599803593	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTTGGTTTCTTGTCTAT	NA	False	NA	-1	True	AATAAA	-20	NA	33827243	33795137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_33795372_33803396_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827126
transcript_38953.nic	chr4	-	1195	10	NIC	ENSMUSG00000028391.17	novel	1440	11	NA	NA	-9	-100	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	61.169063430689	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGTGGCTTTGTGTT	NA	False	NA	-4	True	NA	NA	NA	62389142	62371970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_62372175_62375676_62375819_62377052_62377121_62378558_62378660_62378756_62378902_62380377_62380453_62381580_62381714_62382163_62382307_62387073_62387171_62389055
transcript_38956.known	chr4	+	2167	6	FSM	ENSMUSG00000028392.16	ENSMUST00000107449.4	2167	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	4.63033476111609	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCTTTGCTGGTAACTG	9556	False	NA	28	True	AATAAA	-39	NA	62398289	62415535	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_62398675_62400854_62400954_62404649_62404881_62406422_62406449_62412969_62413095_62414234
transcript_38957.known	chr4	-	1205	2	FSM	ENSMUSG00000038422.3	ENSMUST00000037820.3	1205	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCCTGTGTTCCTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	62420513	62417244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_62418331_62420394
transcript_38960.known	chr4	-	1247	12	FSM	ENSMUSG00000028393.11	ENSMUST00000107444.8	1247	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_11	192.970301316246	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGTGCCCTCTTCCTGC	NA	False	NA	-1	True	AGTAAA	-18	NA	62438131	62427405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62438031
transcript_38961.known	chr4	-	1206	12	FSM	ENSMUSG00000028393.11	ENSMUST00000030090.4	1206	12	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_1	45.4718149012465	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGTGCCCTCTTCCTGC	NA	False	NA	-1	True	AGTAAA	-18	NA	62438155	62427405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_62427548_62428341_62428472_62428751_62428839_62428930_62429019_62429104_62429161_62429760_62429850_62429938_62430023_62430123_62430260_62431107_62431205_62431768_62431820_62432310_62432498_62438096
transcript_38966.known	chr4	-	1945	4	FSM	ENSMUSG00000028394.10	ENSMUST00000128100.2	1945	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	150.086641644085	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCATACAATGTGCTTT	NA	False	NA	1	True	AATAAA	-22	NA	62443305	62440885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_62442348_62442554_62442674_62442846_62443073_62443167
transcript_38967.known	chr4	-	1805	4	FSM	ENSMUSG00000028394.10	ENSMUST00000030091.10	1805	4	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_3	9.56846672960488	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTCATACAATGTGCTTT	NA	False	NA	1	True	AATAAA	-22	NA	62443305	62440885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_62442348_62442554_62442674_62442986_62443073_62443167
transcript_38971.nnic	chr4	+	599	5	NNC	ENSMUSG00000059810.19	novel	2072	18	NA	NA	-120	-16510	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_4	32.2286751201473	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGTGTGTTCTGGCCTCTCT	NA	False	NA	NA	False	NA	NA	NA	62501717	62525643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_62501951_62521157_62521209_62523724_62523784_62524743_62524839_62525482
transcript_38972.nic	chr4	+	1243	4	ISM	ENSMUSG00000059810.19	ENSMUST00000098031.10	2072	18	-120	50033	-120	-16510	5prime_fragment	FALSE	canonical	3	86	junction_2	7.25718035235908	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGTGTGTTCTGGCCTCTCT	NA	False	NA	NA	False	NA	NA	NA	62501717	62525643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_62501951_62521157_62521209_62523724_62523784_62524743
transcript_38974.known	chr4	-	1268	10	FSM	ENSMUSG00000028356.5	ENSMUST00000030041.5	1268	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	3.47832796499967	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTGTGTTGGCGTCTCA	NA	False	NA	NA	False	AATAAA	-22	NA	63072410	63061511	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_63061638_63061903_63062078_63062387_63062556_63063501_63063584_63066938_63066986_63067655_63067758_63068564_63068682_63069690_63069768_63070820_63070964_63072178
transcript_3898.known	chr10	-	2991	10	FSM	ENSMUSG00000039531.9	ENSMUST00000048222.6	2991	10	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_9	17.0301113137297	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAGAAGATAGCCAAATG	NA	False	NA	NA	False	NA	NA	NA	33827218	33802314	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_33803618_33804007_33804160_33805816_33805983_33806151_33806341_33811084_33811254_33816153_33816276_33819645_33819757_33824924_33825495_33825743_33825861_33827126
transcript_38980.known	chr4	+	1135	3	FSM	ENSMUSG00000039105.7	ENSMUST00000035301.7	1135	3	0	0	0	0	multi-exon	FALSE	canonical	3	4249	junction_2	22.5	1239	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGAGCAGAATTTCATCT	NA	False	NA	NA	False	AATACA	-20	NA	63463008	63468987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_63463237_63466821_63466923_63468181
transcript_38981.known	chr4	+	3765	10	FSM	ENSMUSG00000045917.18	ENSMUST00000077709.11	3765	10	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	11.4901997962622	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTAGTAAGGGACCATGTT	NA	False	NA	18	True	AATAAA	-18	NA	63477017	63504594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_63477195_63479148_63479233_63480676_63480869_63483893_63484004_63486697_63486806_63488180_63488331_63496037_63496149_63498169_63498251_63498529_63498710_63502022
transcript_38984.known	chr4	+	3191	2	FSM	ENSMUSG00000051675.14	ENSMUST00000107366.2	3191	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTCATGTCTTAATT	NA	False	NA	20	True	AATAAA	-21	NA	65523222	65534475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_65523307_65531368
transcript_38985.nnic	chr4	-	885	2	Genic_Genomic	ENSMUSG00000046341.6	novel	450	1	NA	NA	-92	445	multi-exon	FALSE	canonical	2	29	junction_1	0	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAGAAAATTATAAGGG	NA	False	NA	NA	False	AATAAA	-32	NA	69844408	69843421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr4_-_69844194_69844295
transcript_38988.nic	chr4	-	2624	16	ISM	ENSMUSG00000039298.17	ENSMUST00000076541.13	5248	34	133794	0	-11944	0	3prime_fragment	FALSE	canonical	3	161	junction_11	33.0100321451255	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCAGCTGCCTCTGTCCTC	NA	False	NA	-4	True	AATAAA	-15	NA	70194861	70141259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_70141352_70141766_70141814_70146834_70146962_70153583_70153728_70156416_70156683_70157521_70157600_70160707_70160833_70161632_70161823_70163617_70163735_70168589_70168710_70172872_70173052_70175571_70175621_70182727_70182961_70184711_70185286_70190880_70191013_70194710
transcript_3899.known	chr10	-	1090	7	FSM	ENSMUSG00000019782.11	ENSMUST00000019917.6	1090	7	0	0	0	0	multi-exon	FALSE	canonical	3	1217	junction_2	78.0243907733701	252	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTTTACTTCCTCTTA	NA	False	NA	-23	True	AATAAA	-23	NA	33895620	33872550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_33872845_33877132_33877196_33877653_33877787_33878419_33878564_33884988_33885120_33888067_33888134_33895361
transcript_38990.known	chr4	+	1322	6	FSM	ENSMUSG00000094116.2	ENSMUST00000178319.2	1322	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.49666295470958	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTCTTTGCTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-12	NA	73541220	73545264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_73541344_73542037_73542126_73542595_73542905_73543182_73543261_73544237_73544544_73544846
transcript_38991.known	chr4	+	1322	6	FSM	ENSMUSG00000096700.2	ENSMUST00000180092.2	1322	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.49666295470958	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTCTTTGCTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-12	NA	73556357	73560398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_73556481_73557174_73557263_73557729_73558039_73558316_73558395_73559371_73559678_73559980
transcript_38992.known	chr4	+	1322	6	FSM	ENSMUSG00000095048.8	ENSMUST00000171348.9	1322	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.49666295470958	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAACTCTTTGCTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-12	NA	73586590	73590633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_73586714_73587407_73587496_73587962_73588272_73588549_73588628_73589606_73589913_73590215
transcript_38993.known	chr4	-	1324	6	FSM	ENSMUSG00000096333.8	ENSMUST00000107319.8	1324	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	1.67332005306815	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTCTTTTCTTTTTTTTC	NA	False	NA	NA	False	AATAAA	-12	NA	73824190	73820143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_73820562_73820866_73821173_73822148_73822227_73822504_73822814_73823283_73823372_73824065
transcript_38994.known	chr4	-	1312	6	FSM	ENSMUSG00000093962.8	ENSMUST00000107310.9	1312	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	1.83303027798234	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTCTTTTCTTTTTTTTC	NA	False	NA	NA	False	AATAAA	-12	NA	73838997	73834964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_73835383_73835687_73835994_73836969_73837048_73837325_73837623_73838090_73838179_73838872
transcript_38995.known	chr4	+	4196	22	FSM	ENSMUSG00000028397.14	ENSMUST00000030102.12	4196	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	55.9303502727513	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCGTCTTCTGTCTGTCA	NA	False	NA	14	True	ATTAAA	-15	NA	74170172	74324097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_74170324_74181045_74181207_74189430_74189607_74199133_74199249_74216677_74216872_74225201_74225252_74229883_74229988_74233748_74233887_74248891_74249086_74251869_74252106_74252785_74253106_74255118_74255228_74261606_74261789_74263679_74263894_74266636_74266714_74275578_74275635_74277656_74277766_74291802_74291989_74295866_74296038_74309613_74309734_74317583_74317677_74323057
transcript_38996.nnic	chr4	+	4118	21	NIC	ENSMUSG00000028397.14	novel	4196	22	NA	NA	-83	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	74.8175113192092	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCGTCTTCTGTCTGTCA	NA	False	NA	14	True	ATTAAA	-15	NA	74170089	74324097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_74170324_74189430_74189607_74199133_74199249_74216677_74216872_74225201_74225252_74229883_74229988_74233748_74233887_74248891_74249086_74251869_74252106_74252785_74253106_74255118_74255228_74261606_74261789_74263679_74263894_74266636_74266714_74275578_74275635_74277656_74277766_74291802_74291989_74295866_74296038_74309613_74309734_74317583_74317677_74323057
transcript_38999.known	chr4	-	741	2	FSM	ENSMUSG00000028398.9	ENSMUST00000030103.9	741	2	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_1	0	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTAGTTCTTTTAATTTT	NA	False	NA	NA	False	AATAAA	-16	NA	75196542	75195590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_75196007_75196217
transcript_39.known	ERCC-00111	+	978	1	FSM	ERCC-00111A	DQ883685	978	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	227	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00111_+_0_1000
transcript_390.known	chr1	-	2964	11	FSM	ENSMUSG00000025920.20	ENSMUST00000162007.8	2964	11	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_9	11.3207773584679	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACTTTGATTCATATAGTGA	NA	False	NA	NA	False	AATAAA	-18	NA	16589464	16414514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_16416236_16436302_16436364_16439978_16440111_16444897_16445036_16460044_16460258_16462740_16462849_16464274_16464435_16510546_16510683_16533258_16533419_16579565_16579633_16589396
transcript_39001.known	chr4	-	8429	9	FSM	ENSMUSG00000008575.18	ENSMUST00000064770.9	8429	9	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	6.11861912526021	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTCTGGCCTCGTGTTTT	NA	False	NA	-3	True	AATAAA	-15	NA	82423545	82208412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_82215049_82245965_82246151_82248528_82248664_82268625_82268745_82271759_82271881_82277968_82278038_82301844_82301899_82416474_82417007_82422967
transcript_39002.known	chr4	-	8763	9	FSM	ENSMUSG00000028403.16	ENSMUST00000030110.15	8763	9	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	13.8293166859393	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAATGTTTTTATCCTCTTA	NA	False	NA	-10	True	AATAAA	-18	NA	82777910	82716974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_82724699_82725249_82725294_82738566_82738684_82753682_82753822_82756512_82756625_82762340_82762440_82765779_82765977_82772205_82772353_82777726
transcript_39008.known	chr4	-	8831	20	FSM	ENSMUSG00000038172.15	ENSMUST00000102823.10	8831	20	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	31.1407314036548	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTCTTCTATTTGATG	NA	False	NA	-12	True	AATAAA	-16	NA	83242492	83138536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_83145462_83148644_83148762_83150947_83151066_83155478_83155588_83158304_83158432_83159882_83159975_83160375_83160538_83162140_83162201_83162284_83162353_83163266_83163376_83164509_83164576_83165849_83165956_83171222_83171288_83174281_83174350_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
transcript_39017.known	chr4	-	1804	16	FSM	ENSMUSG00000038172.15	ENSMUST00000048274.11	1804	16	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_7	23.0820757780192	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCACAAATTCAATTTTCCAT	NA	False	NA	NA	False	AATAAA	-22	NA	83242476	83158046	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_83158432_83159882_83159975_83160375_83160538_83162140_83162201_83162284_83162353_83163266_83163376_83164509_83164576_83165849_83165956_83171222_83171288_83174281_83174350_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
transcript_3902.known	chr10	-	5323	2	FSM	ENSMUSG00000049872.9	ENSMUST00000069125.8	5323	2	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGATTGGTCTAGTTTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	33972515	33963810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_33968512_33971893
transcript_39021.known	chr4	-	842	7	FSM	ENSMUSG00000038172.15	ENSMUST00000030205.14	842	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	86.0905531015647	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATGCTCTATTTTTTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	83242426	83177434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_83177704_83179118_83179196_83180062_83180195_83181930_83182039_83189353_83189456_83216164_83216200_83242307
transcript_39026.known	chr4	+	1405	9	FSM	ENSMUSG00000028483.14	ENSMUST00000030206.10	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_6	50.2767341819255	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGATTCTTTTCTCCAA	NA	False	NA	18	True	TATAAA	-18	NA	83335960	83371577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123_83360207_83368307_83368473_83369441_83369550_83371277
transcript_39029.known	chr4	+	1993	8	FSM	ENSMUSG00000028483.14	ENSMUST00000137512.8	1993	8	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_2	136.304730628972	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATCTGTTTAAAAGATT	NA	False	NA	NA	False	AATAAA	-13	NA	83335980	83372270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_83336292_83336942_83337021_83353427_83353533_83354560_83354711_83360123_83360207_83368307_83368473_83369441_83369550_83371277
transcript_3903.known	chr10	-	1094	2	FSM	ENSMUSG00000046031.8	ENSMUST00000062784.8	1094	2	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	0	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTTTCTCCCAAGTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	34003980	34002062	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_34002563_34003386
transcript_39030.known	chr4	+	942	6	FSM	ENSMUSG00000028483.14	ENSMUST00000071544.11	942	6	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	22.8875512014719	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTCTAGTCCCCTTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	83335967	83360323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_83336292_83336942_83337021_83346018_83346104_83353427_83353533_83354560_83354711_83360123
transcript_39032.known	chr4	-	354	1	FSM	ENSMUSG00000066116.4	ENSMUST00000084445.4	354	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCACATTTTTTAAGTA	NA	False	NA	NA	False	NA	NA	NA	83423775	83423421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_83423400_83423800
transcript_39034.known	chr4	+	2822	9	FSM	ENSMUSG00000028488.16	ENSMUST00000030212.15	2822	9	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_4	17.2191753577226	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGAGGCTTCTGCTTCTTCC	NA	False	NA	28	True	AATAAA	-18	NA	85123677	85307617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_85123859_85265360_85265430_85273563_85273637_85294577_85294722_85295630_85295765_85297488_85297648_85299641_85299746_85304026_85304158_85305790
transcript_39036.known	chr4	+	1618	1	FSM	ENSMUSG00000070934.7	ENSMUST00000091064.8	1618	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	95	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTTTGAAATAATTTGC	NA	False	NA	19	True	AATAAA	-19	NA	86493904	86495522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_86493900_86495500
transcript_39037.known	chr4	-	6158	17	FSM	ENSMUSG00000038047.19	ENSMUST00000070607.9	6158	17	0	0	0	0	multi-exon	TRUE	canonical	3	127	junction_2	24.1993672437938	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGAATTCCCTGTATT	NA	False	NA	-7	True	AATAAA	-16	NA	86530292	86497091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_86500256_86501117_86502111_86503564_86503701_86503999_86504183_86504549_86504617_86507221_86507304_86511828_86511932_86512977_86513105_86513599_86513794_86517495_86517667_86518987_86519037_86519459_86519526_86521055_86521201_86522393_86522527_86523873_86523953_86526131_86526228_86529922
transcript_3904.known	chr10	-	4389	6	FSM	ENSMUSG00000039497.9	ENSMUST00000048010.9	4389	6	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_4	20.6164982477626	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATCTCTCCTGCTCTGGTG	NA	False	NA	-10	True	AATAAA	-14	NA	34083711	34027388	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_34029971_34031904_34032113_34035964_34036205_34038731_34038986_34059687_34060157_34083075
transcript_39046.known	chr4	-	1888	8	FSM	ENSMUSG00000028494.13	ENSMUST00000000466.13	1888	8	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_2	61.6944412539141	330	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTTATGTTGTTACATGT	NA	False	NA	NA	False	AAGAAA	-42	NA	86588297	86574801	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_86575642_86576817_86576953_86578324_86578507_86580170_86580451_86582665_86582749_86586603_86586800_86586886_86586943_86588181
transcript_39056.known	chr4	-	878	5	FSM	ENSMUSG00000028495.15	ENSMUST00000102814.5	878	5	0	0	0	0	multi-exon	FALSE	canonical	3	14010	junction_1	3685.72343645043	4128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTTTCATTAATAGTGT	NA	False	NA	NA	False	AATAAA	-21	NA	86775649	86772896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_86773193_86774103_86774251_86774382_86774594_86774964_86775097_86775557
transcript_3906.nnic	chr10	-	648	4	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-92	693	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_2	24.9131825880731	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	-1	True	NA	NA	NA	34109619	34106209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_34106388_34106902_34107071_34107314_34107400_34109402
transcript_39061.known	chr4	-	639	4	FSM	ENSMUSG00000028495.15	ENSMUST00000123229.8	639	4	0	0	0	0	multi-exon	FALSE	canonical	3	18159	junction_1	2678.8979077225	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGATTACGAAGGCATT	NA	False	NA	NA	False	NA	NA	NA	86775591	86773988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_86774251_86774382_86774594_86774964_86775097_86775557
transcript_39063.known	chr4	-	6069	11	FSM	ENSMUSG00000028496.18	ENSMUST00000078090.12	6069	11	0	0	0	0	multi-exon	TRUE	canonical	2	10	junction_9	3.7	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGACTCCTTTATTTTTT	NA	False	NA	NA	False	NA	NA	NA	87951601	87688161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_87692384_87700523_87700596_87701885_87701958_87707523_87707624_87710089_87710220_87712172_87712249_87758918_87759627_87792074_87792219_87798302_87798386_87949760_87949942_87951320
transcript_39065.nic	chr4	+	1759	11	ISM	ENSMUSG00000038368.17	ENSMUST00000097992.10	5791	44	-21	213785	-20	14177	5prime_fragment	FALSE	canonical	3	105	junction_5	16.9292646030476	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGAATTCAGTATATTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	88012845	88115458	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_88012913_88039506_88039596_88042824_88042900_88047134_88047290_88072873_88072979_88088143_88088246_88092849_88093055_88096318_88096526_88100820_88100909_88104116_88104320_88114995
transcript_39066.nnic	chr4	+	1785	10	NNC	ENSMUSG00000038368.17	novel	5791	44	NA	NA	-23958	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	38.3289852606498	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAATGTGACTTTTATT	NA	False	NA	8	True	AGTAAA	-17	NA	88294628	88329241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_88294826_88310195_88310325_88311769_88311886_88315211_88315473_88316078_88316169_88319253_88319432_88321547_88321646_88325349_88325602_88327157_88327234_88328853
transcript_39067.known	chr4	-	2089	7	FSM	ENSMUSG00000028497.13	ENSMUST00000030221.3	2089	7	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	2.26691175145591	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GTAAAAAAAAAAGTGAAACA	NA	False	NA	NA	False	NA	NA	NA	88357163	88331166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_88332584_88337935_88338062_88341227_88341335_88344972_88345086_88353175_88353304_88355696_88355801_88357069
transcript_3907.nnic	chr10	-	674	4	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-98	693	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	34.5671648951558	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	-1	True	NA	NA	NA	34109625	34106209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_34106388_34106902_34107071_34107314_34107420_34109402
transcript_39070.known	chr4	-	4174	1	FSM	ENSMUSG00000070923.5	ENSMUST00000094993.3	4174	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTTGTATTGCTTTTTT	NA	False	NA	-1	True	NA	NA	NA	88640702	88636528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_88636500_88640700
transcript_39077.known	chr4	+	2797	8	FSM	ENSMUSG00000062937.8	ENSMUST00000058030.10	2797	8	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_1	29.2609651521041	243	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGATCAGATTATACTTGA	5048	False	NA	NA	False	NA	NA	NA	89055358	89099318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_89055762_89066425_89066513_89070245_89070305_89074682_89074851_89089364_89089468_89090381_89090622_89095039_89095163_89097704
transcript_39087.known	chr4	-	852	3	FSM	ENSMUSG00000044303.7	ENSMUST00000060501.5	852	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGATTTTTAGCATAGAAAT	NA	False	NA	-3	True	AATAAA	-26	NA	89200429	89192707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_89193012_89194881_89195223_89200222
transcript_39088.known	chr4	-	895	3	FSM	ENSMUSG00000044303.7	ENSMUST00000107131.2	895	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	1	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCGGCCGCGAAGGGAATAA	NA	False	NA	-73	True	NA	NA	NA	89212890	89192777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_89193012_89194881_89195223_89212570
transcript_39089.known	chr4	-	1390	2	FSM	ENSMUSG00000073802.6	ENSMUST00000097981.6	1390	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGAAGTTCAACTTGGTTT	NA	False	NA	NA	False	AAGAAA	-18	NA	89229276	89224535	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_89225552_89228902
transcript_3909.nnic	chr10	-	511	3	NNC	ENSMUSG00000111149.2	novel	378	3	NA	NA	-40	693	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_2	27.5	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTCTCGGTCTCTTTCT	NA	False	NA	-1	True	NA	NA	NA	34109567	34106209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_34106388_34106902_34107071_34109402
transcript_39091.known	chr4	-	3671	6	FSM	ENSMUSG00000008489.19	ENSMUST00000107110.8	3671	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	41.6461282714252	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGTATCTTTAAATACAT	NA	False	NA	2	True	AATAAA	-20	NA	91260271	91138999	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_91141808_91148997_91149224_91152228_91152383_91169450_91169555_91196847_91197092_91260136
transcript_39096.nnic	chr4	-	990	6	NNC	ENSMUSG00000087128.8	novel	925	5	NA	NA	-17	-20	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	6.01331855134916	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAAGAGAGACATGAAAAG	NA	False	NA	NA	False	NA	NA	NA	94365434	94349187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_94349585_94350122_94350199_94352666_94352793_94353653_94353778_94356020_94356103_94365249
transcript_39098.known	chr4	-	925	5	FSM	ENSMUSG00000087128.8	ENSMUST00000133884.8	925	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	7.28010988928052	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATGTTCTGGGCTGGA	NA	False	NA	NA	False	CATAAA	-17	NA	94365417	94349167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_94349593_94352666_94352793_94353653_94353778_94356020_94356103_94365249
transcript_3910.known	chr10	-	2727	12	FSM	ENSMUSG00000039480.15	ENSMUST00000105512.8	2727	12	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_7	20.4676725553911	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTTGTATTATTGAATA	NA	False	NA	-1	True	AATAAA	-17	NA	34294535	34179604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34274109_34274192_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
transcript_39102.known	chr4	-	2784	14	FSM	ENSMUSG00000028577.14	ENSMUST00000107107.9	2784	14	0	0	0	0	multi-exon	TRUE	canonical	3	626	junction_12	53.7532164993284	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGTGAGGTTTTCCTGTG	NA	False	NA	-12	True	AATAAA	-15	NA	94491481	94457403	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_94458147_94459923_94460089_94462218_94462321_94463402_94463472_94466623_94466693_94470717_94470938_94471650_94471809_94472069_94472240_94474531_94474668_94474989_94475158_94475517_94475639_94475723_94475825_94478117_94478312_94491113
transcript_39105.known	chr4	+	2139	20	FSM	ENSMUSG00000028576.13	ENSMUST00000030311.11	2139	20	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_8	18.5526129152575	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTCCTTTTCCTGTGTT	NA	False	NA	10	True	AATAAA	-11	NA	94502727	94581466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_94502889_94506203_94506339_94510090_94510227_94512967_94513017_94515213_94515313_94515488_94515550_94520913_94520974_94524010_94524073_94541163_94541303_94543065_94543129_94546743_94546888_94549184_94549226_94550823_94550904_94566501_94566556_94567416_94567515_94568170_94568298_94573858_94574023_94575047_94575174_94579956_94580018_94581187
transcript_3911.known	chr10	-	2743	12	FSM	ENSMUSG00000039480.15	ENSMUST00000047885.14	2743	12	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_7	12.7305190664984	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTTTGTATTATTGAATA	NA	False	NA	-1	True	AATAAA	-17	NA	34294548	34179604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34274109_34274195_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
transcript_39110.known	chr4	-	7420	20	FSM	ENSMUSG00000062627.10	ENSMUST00000075872.4	7420	20	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_15	17.5783170388094	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTATTAGCAATGTTATT	NA	False	NA	0	True	AATAAA	-25	NA	94867337	94830276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_94835361_94836338_94836397_94836565_94836672_94839162_94839296_94840410_94840600_94841099_94841175_94841734_94841786_94842108_94842164_94845286_94845376_94847149_94847228_94848564_94848669_94849939_94850071_94853365_94854109_94856106_94856206_94857216_94857296_94858748_94858773_94858860_94858939_94861154_94861226_94863453_94863530_94867240
transcript_39115.known	chr4	-	704	3	FSM	ENSMUSG00000062627.10	ENSMUST00000136130.2	704	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	6	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACTCAGTTTTCTTATAT	NA	False	NA	NA	False	NA	NA	NA	94867312	94860669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_94861226_94863453_94863530_94867240
transcript_39118.known	chr4	+	1891	16	FSM	ENSMUSG00000028573.19	ENSMUST00000079223.11	1891	16	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	4.66476151587624	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGTCACTTATGTCTGT	NA	False	NA	10	True	AATAAA	-23	NA	95445743	95815176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_95445829_95473468_95473685_95485859_95485972_95489201_95489354_95511717_95511807_95585196_95585313_95627025_95627155_95657662_95657767_95688793_95688902_95700344_95700407_95710214_95710363_95725821_95725897_95732309_95732431_95737818_95737914_95811161_95811224_95814959
transcript_39126.known	chr4	-	3605	9	FSM	ENSMUSG00000052914.5	ENSMUST00000030303.6	3605	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.40867845869808	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCCTGGACCTCCTCTCTG	NA	False	NA	NA	False	AATAAA	-18	NA	96441898	96404374	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_96406443_96411939_96412079_96414075_96414264_96417621_96417761_96419868_96420046_96423682_96423844_96424232_96424383_96433935_96434099_96441478
transcript_39127.known	chr4	-	2037	9	FSM	ENSMUSG00000015224.11	ENSMUST00000055693.9	2037	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.31695671910659	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTACCTTGCGTGCTTCTT	NA	False	NA	NA	False	CATAAA	-21	NA	96479815	96456665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_96457140_96460171_96460311_96462088_96462277_96465828_96465971_96467623_96467801_96471645_96471807_96472213_96472364_96474065_96474229_96479372
transcript_39128.known	chr4	-	952	7	FSM	ENSMUSG00000028563.17	ENSMUST00000030292.12	952	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	263.049266614957	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTGACCTGTTATTAA	NA	False	NA	-4	True	AATAAA	-18	NA	98271483	98243606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_98243918_98246154_98246285_98253799_98253874_98258728_98258821_98263156_98263251_98268854_98268929_98271306
transcript_39129.known	chr4	-	1027	7	FSM	ENSMUSG00000028563.17	ENSMUST00000102793.11	1027	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	212.976328888134	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTATTGACCTGTTATTAA	NA	False	NA	-4	True	AATAAA	-18	NA	98271543	98243606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_98243918_98246154_98246285_98253799_98253874_98258728_98258821_98263156_98263266_98268854_98268929_98271306
transcript_39132.known	chr4	+	2104	15	FSM	ENSMUSG00000061859.18	ENSMUST00000107030.9	2104	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_14	5.57554792768187	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTCTGGTCTGTGGTGTTC	NA	False	NA	NA	False	NA	NA	NA	98284128	98342944	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_98284162_98293615_98293672_98293771_98293939_98297391_98297587_98299263_98299404_98301240_98301437_98304867_98304997_98312512_98312732_98314249_98314350_98317171_98317264_98319994_98320137_98325566_98325708_98329290_98329380_98331987_98332045_98342596
transcript_39134.nic	chr4	+	3115	4	NIC	ENSMUSG00000087166.10	novel	2942	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	192	junction_2	120.477752671972	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTTACTTAATGTCCCT	NA	False	NA	32	True	NA	NA	NA	98615029	98626717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_98615078_98615631_98615708_98621359_98622316_98624682
transcript_39135.nic	chr4	+	3168	4	ISM	ENSMUSG00000087166.10	ENSMUST00000154279.3	2942	5	-28	0	-14	0	intron_retention	FALSE	canonical	3	363	junction_2	40.8765077873452	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTTACTTAATGTCCCT	NA	False	NA	32	True	NA	NA	NA	98614956	98626717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682
transcript_39137.known	chr4	+	2942	5	FSM	ENSMUSG00000087166.10	ENSMUST00000154279.3	2942	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	184.711937892492	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTTTACTTAATGTCCCT	NA	False	NA	32	True	NA	NA	NA	98614984	98626717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_98615078_98615631_98615708_98621379_98622316_98624682_98624985_98625182
transcript_3914.known	chr10	-	1978	11	FSM	ENSMUSG00000039480.15	ENSMUST00000130290.2	1978	11	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_6	26.4469279879535	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATACATAAAGAGACATG	NA	False	NA	NA	False	NA	NA	NA	34294524	34180260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_34180976_34186296_34186466_34189584_34189738_34190745_34190865_34198604_34198703_34200283_34200459_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
transcript_39140.known	chr4	+	2251	3	FSM	ENSMUSG00000085843.2	ENSMUST00000133455.2	2251	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	4	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTCTGCCTTGTTT	NA	False	NA	NA	False	TATAAA	-41	NA	98682004	98687137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_98682120_98684245_98684324_98685079
transcript_39142.known	chr4	+	2792	11	FSM	ENSMUSG00000028550.16	ENSMUST00000180278.2	2792	11	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	10.6155546251715	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACACTTTTGTTTTGG	NA	False	NA	9	True	NA	NA	NA	99082383	99148020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_99082521_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
transcript_39143.known	chr4	+	3178	11	FSM	ENSMUSG00000028550.16	ENSMUST00000030279.15	3178	11	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	14.1265707091282	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACTTTTGTTTTGGTTTT	NA	False	NA	13	True	NA	NA	NA	99082170	99148024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_99082690_99100813_99100949_99104114_99104199_99106201_99106436_99109428_99109760_99111109_99111181_99112650_99112788_99116792_99116872_99117724_99117802_99123303_99123424_99146633
transcript_39144.nnic	chr4	+	671	4	NNC	ENSMUSG00000087332.2	novel	354	2	NA	NA	-9	21626	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2.16024689946929	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCATTCTCACCTTTTG	NA	False	NA	NA	False	NA	NA	NA	99457727	99482874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_99457876_99470378_99470440_99480607_99480741_99482545
transcript_39145.known	chr4	+	354	2	FSM	ENSMUSG00000087332.2	ENSMUST00000132108.2	354	2	0	0	0	0	multi-exon	TRUE	canonical	3	84	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACACTACAATGAAATTCAAG	NA	False	NA	NA	False	NA	NA	NA	99457736	99461248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_99457876_99461033
transcript_39151.known	chr4	+	3079	15	FSM	ENSMUSG00000073792.12	ENSMUST00000097961.9	3079	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	55.2805922322746	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGCGTGTATTTCTT	NA	False	NA	18	True	ATTAAA	-18	NA	99603901	99651697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99630591_99630657_99631991_99632178_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
transcript_39157.nnic	chr4	+	2897	13	NIC	ENSMUSG00000073792.12	novel	3079	15	NA	NA	-68	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_6	56.4121736270934	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGCGTGTATTTCTT	NA	False	NA	18	True	ATTAAA	-18	NA	99603832	99651697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_99603944_99607267_99607471_99615099_99615185_99626360_99626451_99627450_99627540_99629770_99629854_99632726_99632863_99634562_99634649_99636922_99637008_99638965_99639037_99641053_99641123_99641229_99641429_99650107
transcript_3916.nic	chr10	-	864	7	NIC	ENSMUSG00000039480.15	novel	761	7	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	39.4883949196892	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATTGCTTCGTAATAC	NA	False	NA	NA	False	AATAAA	-15	NA	34294583	34273063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_34273238_34274109_34274192_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
transcript_39167.known	chr4	-	2806	9	FSM	ENSMUSG00000028549.18	ENSMUST00000146258.2	2806	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_5	47.6377935572167	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACTAGGGTGCAAGGCAA	NA	False	NA	NA	False	AATATA	-39	NA	99717423	99653638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99686932_99687000_99690333_99690470_99702294_99702338_99717319
transcript_39168.nnic	chr4	-	659	8	NIC	ENSMUSG00000028549.18	novel	2806	9	NA	NA	-24	-54	combination_of_known_splicesites	FALSE	canonical	3	12	junction_6	80.1386553520375	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATATGCCTGTATG	NA	False	NA	4	True	AATAAA	-35	NA	99717395	99655621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_99655814_99657730_99657779_99668998_99669059_99670113_99670208_99677837_99677917_99686932_99687000_99702294_99702338_99717319
transcript_39174.known	chr4	+	2121	14	FSM	ENSMUSG00000073791.14	ENSMUST00000136874.4	2121	14	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	5.10481846862679	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTGTCTTGTTAATTG	2075	False	NA	NA	False	AATACA	-19	NA	99717736	99769985	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_99717792_99719629_99719818_99731496_99731709_99732648_99732736_99735289_99735486_99735908_99736028_99746056_99746199_99754598_99754709_99757733_99757892_99758840_99758975_99761882_99762032_99766776_99766987_99768120_99768229_99769732
transcript_39176.known	chr4	+	2371	11	FSM	ENSMUSG00000025791.19	ENSMUST00000058351.16	2371	11	0	0	0	0	multi-exon	TRUE	canonical	3	174	junction_5	14.102836594104	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTGTCGCTTTTATTC	NA	False	NA	16	True	ATTAAA	-19	NA	99786610	99844491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_99787009_99818652_99818816_99819240_99819388_99820714_99820841_99821871_99822063_99824255_99824411_99827183_99827300_99836061_99836198_99839080_99839265_99841165_99841301_99843871
transcript_39177.known	chr4	-	4906	25	FSM	ENSMUSG00000028530.15	ENSMUST00000102781.10	4906	25	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_18	17.726657186283	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGCATATGCCTTTTAATA	NA	False	NA	-7	True	AATAAA	-17	NA	101122479	101009563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_101010788_101011734_101011846_101012212_101012331_101013589_101013763_101014148_101014274_101014950_101015144_101016010_101016106_101016211_101016363_101017228_101017381_101019003_101019140_101020045_101020174_101020854_101020943_101021654_101021799_101023739_101023847_101028431_101028619_101031282_101031407_101032270_101032429_101034764_101034954_101036651_101036992_101038976_101039141_101041533_101041688_101046275_101046400_101048671_101048871_101050979_101051061_101122238
transcript_39179.nic	chr4	+	1644	5	ISM	ENSMUSG00000028527.19	ENSMUST00000106945.8	4175	6	408	2450	-6	766	3prime_fragment	FALSE	canonical	3	206	junction_2	35.8355619462009	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCTGTCAGTGTTTTTCTTC	NA	False	NA	6	True	AAGAAA	-33	NA	101276923	101321742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749
transcript_3918.known	chr10	-	761	7	FSM	ENSMUSG00000039480.15	ENSMUST00000099973.4	761	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	35.3714417134627	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTATTGCTTCGTAATAC	NA	False	NA	NA	False	AATAAA	-15	NA	34294477	34273063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_34273238_34274109_34274195_34275733_34275814_34279646_34279784_34283530_34283603_34287363_34287456_34294356
transcript_39180.nic	chr4	+	4094	5	ISM	ENSMUSG00000028527.19	ENSMUST00000106945.8	4175	6	408	0	-6	0	3prime_fragment	FALSE	canonical	3	206	junction_2	35.8355619462009	38	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGTGATGGAATTTCATAA	NA	False	NA	19	True	AATAAA	-17	NA	101276923	101324192	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_101277163_101304356_101304477_101317696_101317870_101320145_101320265_101320749
transcript_39184.known	chr4	+	1898	4	FSM	ENSMUSG00000035212.15	ENSMUST00000030254.15	1898	4	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_3	48.8011839564939	605	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGTTGCATTTCATAAA	8215	False	NA	8	True	AATAAA	-20	NA	101504914	101516561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_101505023_101509595_101509672_101513305_101513493_101515034
transcript_39188.nnic	chr4	-	1924	4	NNC	ENSMUSG00000035201.16	novel	1976	4	NA	NA	-29801	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	1.69967317119759	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATCTTCTACTCTTTACT	NA	False	NA	NA	False	ATTAAA	-13	NA	101731021	101692165	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_101693139_101694021_101694595_101695022_101695337_101730957
transcript_39189.known	chr4	+	655	1	FSM	ENSMUSG00000081121.2	ENSMUST00000120788.2	655	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGCAAAAGAGATTAAAGA	4019	False	NA	NA	False	NA	NA	NA	101732543	101733198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_101732500_101733200
transcript_3919.known	chr10	+	560	2	FSM	ENSMUSG00000039485.9	ENSMUST00000213791.2	560	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTATGCTGTCTGGGTGA	NA	False	NA	NA	False	AATAAA	-3	NA	34175251	34177312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_34175405_34176905
transcript_39193.nnic	chr4	-	1045	4	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9902	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	187.893586904929	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTCTTCTTGATGT	NA	False	NA	-2	True	ATTAAA	-26	NA	101760888	101747216	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_101747741_101747885_101748198_101760342_101760431_101760767
transcript_39194.nnic	chr4	-	1024	4	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9916	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	190.887983441133	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTCTTCTTGATGT	NA	False	NA	-2	True	ATTAAA	-26	NA	101760902	101747216	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_101747741_101747885_101748198_101760342_101760431_101760802
transcript_39195.known	chr4	-	913	3	FSM	ENSMUSG00000046133.4	ENSMUST00000051043.4	913	3	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	115.5	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTCTTCTTGATGT	NA	False	NA	-2	True	ATTAAA	-26	NA	101750986	101747216	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_101747741_101747885_101748198_101750909
transcript_39196.nnic	chr4	-	1390	3	NNC	ENSMUSG00000046133.4	novel	913	3	NA	NA	-9910	0	at_least_one_novel_splicesite	FALSE	canonical	3	182	junction_2	141	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTTTTCTTCTTGATGT	NA	False	NA	-2	True	ATTAAA	-26	NA	101760896	101747216	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_101747741_101747885_101748198_101760342
transcript_39199.nnic	chr4	-	1999	3	NNC	ENSMUSG00000078626.3	novel	951	4	NA	NA	9732	1205	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_1	2.5	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGACTGTTTGTTTCTTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	101828514	101823444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_101824980_101825125_101825438_101828362
transcript_392.known	chr1	-	1151	5	FSM	ENSMUSG00000025920.20	ENSMUST00000115359.10	1151	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	33.2217925464596	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTTTGTTGTTTATTG	NA	False	NA	NA	False	NA	NA	NA	16589484	16529938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_16530644_16533258_16533419_16556243_16556375_16579565_16579633_16589396
transcript_3920.known	chr10	+	3879	1	FSM	ENSMUSG00000039485.9	ENSMUST00000047935.8	3879	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTGTCTGGGTGAATGT	NA	False	NA	NA	False	AATAAA	-7	NA	34173437	34177316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_34173400_34177300
transcript_39200.nnic	chr4	-	1273	3	NNC	ENSMUSG00000078626.3	novel	951	4	NA	NA	9732	479	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_1	2.5	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGCTGGGTTTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	101828514	101824170	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_101824980_101825125_101825438_101828362
transcript_39201.nnic	chr4	-	760	4	Antisense	novelGene_ENSMUSG00000028524.22_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	1.24721912892465	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGAAATCTTTGCGTGTT	NA	False	NA	NA	False	ATTAAA	-21	NA	102716614	102698519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr4_-_102698876_102702150_102702386_102702701_102702798_102716541
transcript_39206.known	chr4	+	4752	13	FSM	ENSMUSG00000028522.17	ENSMUST00000106857.8	4752	13	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	18.0662361572323	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGTGTGGTGTCTAGTT	343	False	NA	15	True	ATTAAA	-16	NA	102976482	103022949	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_102976707_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330_103000404_103005495_103005648_103006320_103006403_103007730_103007826_103012683_103012812_103016878_103017019_103019619
transcript_39209.known	chr4	+	1918	7	FSM	ENSMUSG00000028522.17	ENSMUST00000124348.2	1918	7	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	20.8619803044251	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAAAGA	467	False	NA	NA	False	NA	NA	NA	102976606	103001620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_102976707_102984469_102984495_102988162_102988309_102996554_102996714_102997307_102997441_102998033_102998099_103000330
transcript_3921.known	chr10	-	555	2	FSM	ENSMUSG00000111753.2	ENSMUST00000214107.2	555	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCTTGACTTAGTTCCAT	NA	False	NA	NA	False	NA	NA	NA	35361392	35354822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_35355139_35361153
transcript_39212.nnic	chr4	+	2006	10	NNC	ENSMUSG00000035069.4	novel	1915	9	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	38.2935381197454	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGCCTTAGTTTGTAG	46	False	NA	16	True	AATAAA	-28	NA	103171012	103223640	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_103171081_103173440_103173536_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
transcript_39213.known	chr4	+	1915	9	FSM	ENSMUSG00000035069.4	ENSMUST00000035780.4	1915	9	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	14.2560294261761	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGCCTTAGTTTGTAG	42	False	NA	16	True	AATAAA	-28	NA	103171008	103223640	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_103171081_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
transcript_39214.nnic	chr4	+	1902	9	NNC	ENSMUSG00000035069.4	novel	1915	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	33.380383460949	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGCCTTAGTTTGTAG	42	False	NA	16	True	AATAAA	-28	NA	103171008	103223640	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_103171068_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103186034_103186164_103188501_103188577_103210698_103210849_103223169
transcript_39217.nnic	chr4	+	1808	8	NIC	ENSMUSG00000035069.4	novel	1915	9	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_5	32.5739347406756	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTTGCCTTAGTTTGTAG	20	False	NA	16	True	AATAAA	-28	NA	103170986	103223640	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_103171081_103176218_103176726_103178836_103179066_103182215_103182390_103182489_103182598_103188501_103188577_103210698_103210849_103223169
transcript_3922.known	chr10	-	3218	1	FSM	ENSMUSG00000063953.4	ENSMUST00000080898.4	3218	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	230	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-38	NA	35587888	35584670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_35584700_35587900
transcript_39223.nic	chr4	+	1108	8	NIC	ENSMUSG00000028519.17	novel	5278	15	NA	NA	-56	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_7	7.28991475552747	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGACTGTTGTAACTTT	NA	False	NA	8	True	AATAAA	-15	NA	104224730	104537579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_104224915_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649_104536770_104537266_104537306_104537387
transcript_39225.nic	chr4	+	1190	7	ISM	ENSMUSG00000028519.17	ENSMUST00000106830.9	5278	15	-56	64462	-56	0	5prime_fragment	FALSE	canonical	3	42	junction_1	2.40947204913349	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGACTGTTGTAACTTT	NA	False	NA	8	True	AATAAA	-15	NA	104224730	104537579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_104224915_104336270_104336473_104462494_104462635_104470365_104470465_104535898_104536031_104536649_104536770_104537266
transcript_39229.known	chr4	+	1061	4	FSM	ENSMUSG00000029656.14	ENSMUST00000123892.2	1061	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	0.816496580927726	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAAATGATCTCTGTGTGG	NA	False	NA	NA	False	AATAAA	-15	NA	104656404	104661737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_104656711_104657531_104657686_104658534_104658604_104661205
transcript_39230.known	chr4	-	7969	9	FSM	ENSMUSG00000028518.9	ENSMUST00000030243.8	7969	9	0	0	0	0	multi-exon	TRUE	canonical	3	64	junction_5	8.06903804675625	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTGTCTGAAGCTGCCTT	NA	False	NA	0	True	AATAAA	-15	NA	104967087	104887070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_104893528_104893895_104894023_104896918_104897424_104904287_104904513_104906530_104906619_104908398_104908544_104909112_104909207_104932610_104932753_104966901
transcript_39232.known	chr4	+	3159	6	FSM	ENSMUSG00000028517.9	ENSMUST00000064139.8	3159	6	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_2	17.8616908494129	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCACTGGTGCCTGAGCTGT	NA	False	NA	13	True	AATAAA	-23	NA	105014543	105089961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_105015161_105051999_105052158_105065720_105066002_105066396_105066455_105076524_105076702_105088093
transcript_39235.nic	chr4	-	2093	8	ISM	ENSMUSG00000054362.10	ENSMUST00000106788.2	1569	10	1403	-394	1403	-7	3prime_fragment	FALSE	canonical	1	5	junction_3	4.52656557650139	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCAGAGCCGGTTCTACC	NA	False	NA	NA	False	AATAAA	-16	NA	106473032	106448112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_106448885_106464485_106464620_106467596_106467723_106468609_106468772_106470305_106470450_106470564_106470700_106472231_106472355_106472535
transcript_39236.known	chr4	+	2191	2	FSM	ENSMUSG00000043572.8	ENSMUST00000058905.8	2191	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGTGTGTGTGTGTG	NA	False	NA	5	True	AATAAA	-20	NA	106508302	106512479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_106508329_106510314
transcript_39237.known	chr4	+	502	2	FSM	ENSMUSG00000043572.8	ENSMUST00000106782.2	502	2	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCAGGGAGCTGCTGAGA	NA	False	NA	NA	False	NA	NA	NA	106508265	106510736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_106508346_106510314
transcript_39239.known	chr4	-	2121	10	FSM	ENSMUSG00000025413.14	ENSMUST00000026480.13	2121	10	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_4	15.561903466677	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTGTTTGTGTCCT	NA	False	NA	1	True	ATTAAA	-41	NA	106536141	106519452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_106520429_106522852_106522936_106524692_106524775_106525233_106525452_106527645_106527733_106528820_106528946_106531607_106531686_106533794_106533957_106535381_106535500_106535949
transcript_39240.nic	chr4	-	2579	9	NIC	ENSMUSG00000025413.14	novel	2121	10	NA	NA	1	0	intron_retention	TRUE	canonical	3	276	junction_3	16.3893067272536	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTGTTTGTGTCCT	NA	False	NA	1	True	ATTAAA	-41	NA	106536140	106519452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_106520429_106522852_106522936_106524692_106525452_106527645_106527733_106528820_106528946_106531607_106531686_106533794_106533957_106535381_106535500_106535949
transcript_39241.nnic	chr4	-	1827	9	NNC	ENSMUSG00000034853.17	novel	2620	14	NA	NA	-1457	-116	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	8.4400459121974	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGGGACGTCAGTGTTTT	2622	False	NA	NA	False	NA	NA	NA	106614614	106604703	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_106605682_106606458_106606586_106607079_106607212_106610023_106610155_106610910_106610995_106611270_106611338_106612502_106612559_106613041_106613187_106614507
transcript_39242.known	chr4	+	1923	8	FSM	ENSMUSG00000034871.3	ENSMUST00000047620.3	1923	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	2.64189171555813	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCACTGTGTAAGACCTGGG	2113	False	NA	4	True	NA	NA	NA	106591085	106605489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_106591286_106592646_106592794_106599341_106599495_106600393_106600554_106602669_106602895_106603252_106603393_106604169_106604314_106604735
transcript_39243.known	chr4	+	3195	18	FSM	ENSMUSG00000061887.15	ENSMUST00000030367.15	3195	18	0	0	0	0	multi-exon	TRUE	canonical	3	121	junction_13	39.9235428457496	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTCCTGACATACTTGT	NA	False	NA	16	True	ATTAAA	-20	NA	106768666	106906891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_106769110_106770099_106770173_106770401_106770464_106772841_106772927_106866875_106866966_106884413_106884495_106885389_106885450_106888058_106888126_106888211_106888289_106894132_106894198_106894798_106894848_106895418_106895455_106895922_106895978_106897159_106897231_106903512_106903592_106904438_106904468_106904560_106904663_106905220
transcript_39245.known	chr4	+	1128	5	FSM	ENSMUSG00000061887.15	ENSMUST00000132506.8	1128	5	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	7.51664818918645	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTTTATTGTGACAGCAT	NA	False	NA	NA	False	NA	NA	NA	106769057	106867731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_106769110_106770099_106770173_106770401_106770464_106772841_106772927_106866875
transcript_39246.known	chr4	+	1634	18	FSM	ENSMUSG00000061887.15	ENSMUST00000146659.8	1634	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	56.7657116643599	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAGAAAAAAAAGGAAAA	NA	False	NA	NA	False	NA	NA	NA	106769494	106905712	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_106769556_106770099_106770173_106770401_106770464_106772841_106772927_106866875_106866966_106884413_106884495_106885389_106885450_106888058_106888126_106888211_106888289_106894132_106894198_106894798_106894848_106895418_106895455_106895922_106895978_106897159_106897231_106903512_106903592_106904438_106904468_106904560_106904663_106905220
transcript_39248.known	chr4	-	1498	7	FSM	ENSMUSG00000028622.12	ENSMUST00000030365.6	1498	7	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_3	34.5976877840124	476	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTGTCTGTGAGATATTA	NA	False	NA	-8	True	AATAAA	-23	NA	106924065	106913070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_106913302_106914568_106914773_106917679_106917838_106919079_106919266_106921581_106921698_106921783_106921968_106923646
transcript_3925.known	chr10	+	337	3	FSM	ENSMUSG00000046463.6	ENSMUST00000217338.2	337	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	7.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCAAGAAGACGAGCAAGGA	NA	False	NA	NA	False	NA	NA	NA	37017084	37026592	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_37017182_37024872_37025003_37026482
transcript_39251.known	chr4	+	2516	7	FSM	ENSMUSG00000028621.18	ENSMUST00000106758.8	2516	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4.2687494916219	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGACACTTTGTTTTGT	931	False	NA	16	True	ATTAAA	-16	NA	106924184	106943023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_106924243_106925808_106926021_106928066_106928216_106931069_106931158_106934872_106934978_106938087_106938292_106941323
transcript_39259.known	chr4	+	1775	8	FSM	ENSMUSG00000028618.12	ENSMUST00000030361.11	1775	8	0	0	0	0	multi-exon	FALSE	canonical	3	1513	junction_5	112.332959889567	836	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGAGTGTTGGGCTTTCT	NA	False	NA	15	True	ATTAAA	-27	NA	107035595	107058193	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_107036115_107042974_107043081_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
transcript_39260.known	chr4	+	1332	8	FSM	ENSMUSG00000028618.12	ENSMUST00000127652.2	1332	8	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	584.439518701814	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTGAGTGTTGGGCTTT	72	False	NA	13	True	ATTAAA	-25	NA	107036214	107058191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_107036293_107042974_107043081_107044815_107044911_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
transcript_39263.known	chr4	+	1148	6	FSM	ENSMUSG00000028618.12	ENSMUST00000106753.3	1148	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	650.179236826277	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTGGGTTGTATTTTTAT	NA	False	NA	63	True	NA	NA	NA	107035723	107057895	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_107036115_107047731_107047885_107049658_107049741_107050495_107050578_107054702_107054812_107057564
transcript_39269.known	chr4	-	6431	5	FSM	ENSMUSG00000028619.16	ENSMUST00000057043.10	6431	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	11	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATATCTATTTATTGG	NA	False	NA	NA	False	AATAAA	-17	NA	107035744	106991351	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_106996997_107004711_107004906_107022744_107022887_107034761_107034902_107035434
transcript_3927.nnic	chr10	+	1058	3	NNC	ENSMUSG00000046463.6	novel	1791	3	NA	NA	1334	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	8.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTGCCTTGGTCATGGTG	NA	False	NA	4	True	NA	NA	NA	37018418	37027311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_37018518_37024872_37025003_37026482
transcript_39272.known	chr4	-	1755	8	FSM	ENSMUSG00000028617.11	ENSMUST00000030360.11	1755	8	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_4	9.55755924781585	423	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGCTTTTGAATTGCAGA	NA	False	NA	-5	True	AATAAA	-20	NA	107110729	107090710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_107091182_107092996_107093082_107096274_107096389_107096908_107096998_107098098_107098218_107100404_107100537_107104490_107104978_107110471
transcript_39279.known	chr4	+	581	6	FSM	ENSMUSG00000063172.14	ENSMUST00000152717.8	581	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	155.089135660755	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAATTACAACAAAATGCTC	NA	False	NA	-93	True	NA	NA	NA	107110789	107137034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_107110925_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
transcript_39280.known	chr4	+	607	6	FSM	ENSMUSG00000063172.14	ENSMUST00000106749.8	607	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_1	69.6746725862418	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCCATTTTTTTTATATAA	NA	False	NA	8	True	ATTAAA	-19	NA	107111099	107137135	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_107111160_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
transcript_39281.known	chr4	+	608	6	FSM	ENSMUSG00000063172.14	ENSMUST00000046558.8	608	6	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	99.534114754691	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCACTCTGATTCCATTTT	NA	False	NA	-2	True	ATTAAA	-9	NA	107111121	107137125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_107111193_107119663_107119777_107130809_107130917_107132419_107132489_107135123_107135168_107136921
transcript_3929.known	chr10	-	721	5	FSM	ENSMUSG00000051736.9	ENSMUST00000124941.8	721	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	11.3880419739304	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGGTGATGACAATGGTT	NA	False	NA	-17	True	AATAAA	-14	NA	39009896	38994814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_38995031_38996253_38996393_38998172_38998329_39008242_39008375_39009818
transcript_39290.known	chr4	+	1321	10	FSM	ENSMUSG00000057375.14	ENSMUST00000075693.12	1321	10	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_9	32.5261528202145	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGTGTCCTTCAGCTCT	NA	False	NA	28	True	AGTAAA	-18	NA	107171559	107217019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205_107202389_107207610_107207736_107216803
transcript_39297.nic	chr4	+	1213	9	NIC	ENSMUSG00000057375.14	novel	1321	10	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_8	129.727599222371	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTGTGTCCTTCAGCTCT	NA	False	NA	28	True	AGTAAA	-18	NA	107171542	107217019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_107171660_107172959_107173040_107176138_107176303_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205_107202389_107216803
transcript_39300.nnic	chr4	+	1085	8	NNC	ENSMUSG00000057375.14	novel	524	3	NA	NA	2272	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	124.64774857369	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTCCTTCAGCTCTT	-3	True	NA	29	True	AGTAAA	-19	NA	107178439	107217020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_107178547_107193310_107193392_107193633_107193722_107198182_107198300_107201708_107201876_107202205_107202389_107207610_107207736_107216803
transcript_39306.known	chr4	+	4584	18	FSM	ENSMUSG00000028614.15	ENSMUST00000139560.8	4584	18	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_11	46.6085071760132	139	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGAATCTCTGTGTGTTT	NA	False	NA	22	True	AATAAA	-33	NA	107224980	107273543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_107225346_107225953_107226075_107228458_107228561_107231343_107231519_107232274_107232414_107237794_107237904_107238872_107238925_107240781_107240918_107241982_107242076_107243792_107243875_107246647_107246804_107247418_107247659_107247745_107247862_107250339_107250391_107252194_107252259_107252928_107253030_107268262_107268424_107271222
transcript_39314.known	chr4	+	692	5	FSM	ENSMUSG00000028609.7	ENSMUST00000030348.6	692	5	0	0	0	0	multi-exon	FALSE	canonical	3	977	junction_1	47.9446295219809	971	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCTGAATATGTGAATTCTC	NA	False	NA	50	True	AATAAA	-35	NA	107736951	107744621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_107737143_107738089_107738149_107740264_107740376_107742113_107742197_107744373
transcript_39316.known	chr4	+	926	9	FSM	ENSMUSG00000028608.16	ENSMUST00000106727.10	926	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	312.597759708863	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTGAAGGTGGTCT	NA	False	NA	14	True	AATAAA	-19	NA	107747059	107754315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107752747_107752784_107753858
transcript_39319.known	chr4	+	2997	8	FSM	ENSMUSG00000028608.16	ENSMUST00000135454.8	2997	8	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_1	98.5130261769001	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGACCTAGTGATGAAAAACA	NA	False	NA	NA	False	AATAAA	-11	NA	107747009	107756581	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
transcript_39321.nic	chr4	+	778	8	NIC	ENSMUSG00000028608.16	novel	2997	8	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	253.100609180118	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCGTGAAGGTGGTCT	NA	False	NA	14	True	AATAAA	-19	NA	107747079	107754315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_107747211_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
transcript_39323.known	chr4	+	835	7	FSM	ENSMUSG00000028608.16	ENSMUST00000120473.8	835	7	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_1	106.405931330082	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATCTTTATCCCAAAGCAG	NA	False	NA	NA	False	NA	NA	NA	107747065	107752543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_107747094_107747315_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069
transcript_39325.known	chr4	+	1551	7	FSM	ENSMUSG00000028608.16	ENSMUST00000125107.8	1551	7	0	0	0	0	multi-exon	FALSE	canonical	3	677	junction_4	47.0558179187229	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGTGTGTATTTATGT	NA	False	NA	23	True	NA	NA	NA	107747095	107754999	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_107747400_107748661_107748719_107749151_107749234_107749418_107749451_107750530_107750609_107752069_107752136_107754067
transcript_39327.known	chr4	-	2372	5	FSM	ENSMUSG00000028607.17	ENSMUST00000030345.15	2372	5	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_2	11.5866302262565	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGTTCCTTTTTCCTTA	NA	False	NA	0	True	AATAAA	-18	NA	107780807	107761177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_107761761_107764117_107765423_107769837_107769945_107771460_107771542_107780511
transcript_39329.known	chr4	-	1015	4	FSM	ENSMUSG00000028607.17	ENSMUST00000106720.9	1015	4	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	68.2169741014328	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCTGGTTCCTTTTTCCT	NA	False	NA	-2	True	AATAAA	-16	NA	107780757	107761179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_107761761_107769837_107769945_107771460_107771542_107780511
transcript_39330.known	chr4	-	2640	16	FSM	ENSMUSG00000028603.16	ENSMUST00000030340.15	2640	16	0	0	0	0	multi-exon	TRUE	canonical	3	305	junction_7	132.795314509043	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTTGGCTTTTACTGTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	107975729	107901035	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_107902043_107904786_107904867_107912635_107912766_107921082_107921186_107928453_107928608_107931552_107931661_107942351_107942500_107944208_107944360_107948433_107948521_107950020_107950085_107955218_107955346_107959487_107959553_107962240_107962373_107964813_107964886_107969423_107969482_107975575
transcript_3934.known	chr10	+	2929	12	FSM	ENSMUSG00000019845.9	ENSMUST00000019991.8	2929	12	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_3	7.58423767804153	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATCTCTGTGTTAAGTCC	NA	False	NA	NA	False	AATATA	-18	NA	39010018	39027054	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_39010104_39010201_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39020559_39020751_39020928_39021568_39021710_39023307_39023449_39023758_39023934_39025454
transcript_39343.known	chr4	+	1307	10	FSM	ENSMUSG00000028601.19	ENSMUST00000052999.13	1307	10	0	0	0	0	multi-exon	TRUE	canonical	3	713	junction_3	43.9463758530471	716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTGCTGGAATTGTTGG	NA	False	NA	24	True	AATAAA	-17	NA	108022633	108036505	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
transcript_39348.known	chr4	+	1319	10	FSM	ENSMUSG00000028601.19	ENSMUST00000130942.8	1319	10	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_3	222.335582197522	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTCACCTTGGCTAGTGA	NA	False	NA	NA	False	NA	NA	NA	108022662	108036268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108022859_108026911_108026980_108027057_108027424_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
transcript_39355.known	chr4	+	893	9	FSM	ENSMUSG00000028601.19	ENSMUST00000116307.8	893	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	263.258428165178	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTGCTCACCTTGGCTAG	NA	False	NA	NA	False	NA	NA	NA	108022714	108036265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108022859_108026911_108026980_108027057_108027146_108029285_108029373_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
transcript_39364.known	chr4	+	1186	9	FSM	ENSMUSG00000028601.19	ENSMUST00000125647.8	1186	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	262.339951208351	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTTGTGCTGGAATTGTT	NA	False	NA	22	True	AATAAA	-15	NA	108022684	108036503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108022859_108027057_108027146_108029285_108029373_108030076_108030170_108030991_108031049_108031183_108031372_108034269_108034321_108035567_108035616_108036103
transcript_39368.known	chr4	+	341	4	FSM	ENSMUSG00000048351.15	ENSMUST00000141423.8	341	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	200.824965247518	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACCAGGAAAGAAGTCTGT	NA	False	NA	NA	False	NA	NA	NA	108185374	108195375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108185488_108186384_108186416_108189407_108189549_108195319
transcript_39370.known	chr4	+	3714	3	FSM	ENSMUSG00000048351.15	ENSMUST00000131656.2	3714	3	0	0	0	0	multi-exon	FALSE	canonical	3	432	junction_2	33.5	252	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATACTGTTGGTTGGAATTT	NA	False	NA	NA	False	AATAAA	-25	NA	108185336	108198741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108185488_108189407_108189549_108195319
transcript_39372.known	chr4	+	565	3	FSM	ENSMUSG00000048351.15	ENSMUST00000134394.8	565	3	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_1	212	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACAAGCTGGGAGATGG	NA	False	NA	NA	False	NA	NA	NA	108185349	108195648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108185445_108189407_108189549_108195319
transcript_39374.known	chr4	+	767	3	FSM	ENSMUSG00000048351.15	ENSMUST00000073764.13	767	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	216	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGAGTGGCTAGAGTGT	NA	False	NA	-11	True	NA	NA	NA	108185352	108195880	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108185418_108189407_108189549_108195319
transcript_39375.nnic	chr4	-	942	3	NNC	ENSMUSG00000059816.6	novel	593	3	NA	NA	3121	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	22.5	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCATCATTACTTCTGGAA	NA	False	NA	-11	True	AATAAA	-6	NA	108237425	108224973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_108225239_108234543_108234684_108236888
transcript_39376.known	chr4	-	593	3	FSM	ENSMUSG00000059816.6	ENSMUST00000053157.7	593	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	6	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCATCATTACTTCTGGAA	NA	False	NA	-11	True	AATAAA	-6	NA	108240546	108224973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_108225239_108234543_108234684_108240358
transcript_39379.nnic	chr4	-	1222	3	NNC	ENSMUSG00000028597.12	novel	1289	3	NA	NA	826	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	96	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCAAATGTGTTTGCCATT	NA	False	NA	-11	True	AATAAA	-40	NA	108263095	108257586	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_108258195_108260397_108260660_108262743
transcript_39381.known	chr4	-	1289	3	FSM	ENSMUSG00000028597.12	ENSMUST00000030332.7	1289	3	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_2	16.5	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCAAATGTGTTTGCCATT	NA	False	NA	-11	True	AATAAA	-40	NA	108264158	108257586	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_108258195_108260397_108260660_108263739
transcript_39382.known	chr4	+	5865	30	FSM	ENSMUSG00000034610.15	ENSMUST00000097925.9	5865	30	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_29	34.6155374652357	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTTAATTCATCTGGTA	NA	False	NA	21	True	AATAAA	-21	NA	108317206	108416618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108317398_108336069_108336939_108343650_108343815_108348544_108348662_108352346_108352525_108354163_108354253_108356543_108356596_108360162_108360233_108363020_108363148_108365103_108365224_108365417_108365631_108369232_108369408_108370068_108370764_108374579_108374731_108377403_108377491_108380400_108380505_108383964_108384023_108384112_108384217_108386413_108386504_108388032_108388147_108399207_108399286_108399462_108399641_108399858_108399907_108399990_108400074_108405251_108405368_108406422_108406611_108407909_108408011_108412578_108413027_108414518_108414672_108415914
transcript_39383.known	chr4	+	6054	31	FSM	ENSMUSG00000034610.15	ENSMUST00000043368.12	6054	31	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	32.7154227985653	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAAATTTGGTTAATTCAT	NA	False	NA	15	True	AATAAA	-15	NA	108316622	108416612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108316837_108317213_108317398_108336069_108336939_108343650_108343815_108348544_108348662_108352346_108352525_108354163_108354253_108356543_108356596_108360162_108360233_108363020_108363148_108365103_108365224_108365417_108365631_108369232_108369408_108370068_108370764_108374579_108374731_108377403_108377491_108380400_108380505_108383964_108384023_108384112_108384217_108386413_108386504_108388032_108388147_108399207_108399286_108399462_108399641_108399858_108399907_108399990_108400074_108405251_108405368_108406437_108406611_108407909_108408011_108412578_108413027_108414518_108414672_108415911
transcript_39387.known	chr4	-	1516	10	FSM	ENSMUSG00000063800.6	ENSMUST00000079213.6	1516	10	0	0	0	0	multi-exon	TRUE	canonical	3	462	junction_7	44.4233283170614	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGGCTTTTTGTTTCTT	NA	False	NA	-8	True	ATTAAA	-20	NA	108436533	108422066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_108422465_108424101_108424151_108424619_108424718_108424810_108424838_108425554_108425668_108427352_108427464_108430002_108430089_108432565_108432688_108434125_108434286_108436181
transcript_39388.nnic	chr4	-	1207	8	NNC	ENSMUSG00000063800.6	novel	1516	10	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_6	189.176302610522	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGGCTTTTTGTTTCTT	NA	False	NA	-8	True	ATTAAA	-20	NA	108436547	108422066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_108422465_108424101_108424151_108424619_108424718_108424810_108424838_108425554_108425668_108427352_108427464_108434240_108434286_108436181
transcript_3939.known	chr10	+	4192	11	FSM	ENSMUSG00000019845.9	ENSMUST00000213459.2	4192	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_7	48.3434587095297	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	39010063	39028538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_39010104_39010201_39010276_39010983_39011037_39013129_39013188_39016818_39016935_39018250_39018373_39020370_39020559_39021568_39021710_39023307_39023449_39023758_39023934_39025454
transcript_39391.known	chr4	+	3014	17	FSM	ENSMUSG00000028587.19	ENSMUST00000102744.4	3014	17	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_7	60.5103296966724	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAACTGGTATGGTTTGGGGT	5272	False	NA	21	True	NA	NA	NA	108436650	108472030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108436773_108445872_108445979_108447849_108447975_108450489_108450669_108452525_108452842_108454326_108454676_108456519_108456622_108457127_108457282_108459152_108459251_108460584_108460687_108461161_108461334_108461696_108461805_108462724_108462875_108463434_108463555_108469247_108469418_108470265_108470354_108471477
transcript_394.known	chr1	-	1508	7	FSM	ENSMUSG00000025939.20	ENSMUST00000182554.9	1508	7	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	188.385243583461	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGGAGTCTGTTCTTAAA	NA	False	NA	NA	False	AATAAA	-17	NA	16689536	16611013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_16612014_16614172_16614257_16652150_16652227_16655499_16655577_16668174_16668278_16672485_16672578_16689460
transcript_39409.known	chr4	+	3303	25	FSM	ENSMUSG00000028582.15	ENSMUST00000030320.13	3303	25	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_8	22.4730934798829	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTATGTAGCCATTTTTA	3533	False	NA	13	True	NA	NA	NA	108477136	108491320	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108477271_108478708_108478792_108480647_108480793_108481640_108481745_108482042_108482202_108482604_108482731_108482851_108483012_108483177_108483351_108483497_108483574_108483676_108483788_108483870_108484002_108484244_108484318_108484490_108484616_108485027_108485146_108485226_108485400_108485779_108485906_108486770_108486830_108486913_108487031_108487288_108487363_108487474_108487534_108487740_108487793_108488792_108488893_108489031_108489123_108490367_108490501_108490719
transcript_39412.known	chr4	-	3141	6	FSM	ENSMUSG00000028568.17	ENSMUST00000102742.11	3141	6	0	0	0	0	multi-exon	FALSE	canonical	3	1008	junction_1	73.428604780426	407	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGTGTGTGGTTGTTAAA	NA	False	NA	-3	True	ATTAAA	-14	NA	108690811	108671491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_108674084_108675381_108675442_108676332_108676535_108683296_108683411_108687714_108687781_108690704
transcript_39420.known	chr4	+	1359	7	FSM	ENSMUSG00000028567.9	ENSMUST00000030296.9	1359	7	0	0	0	0	multi-exon	FALSE	canonical	3	773	junction_6	37.6592913133296	1174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGGCCTTTGGTTACTGG	NA	False	NA	28	True	ATTAAA	-22	NA	108691797	108719324	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108692054_108703147_108703209_108710365_108710419_108713344_108713419_108715121_108715192_108716471_108716556_108718563
transcript_39421.known	chr4	+	1629	1	FSM	ENSMUSG00000073775.5	ENSMUST00000102738.4	1629	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	190	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGGTCTCTTGATGTA	NA	False	NA	9	True	AATAAA	-15	NA	108704981	108706610	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108705000_108706600
transcript_39422.known	chr4	+	3327	5	FSM	ENSMUSG00000003411.11	ENSMUST00000106650.9	3327	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	5.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTGTGTATCTGCCTC	NA	False	NA	NA	False	AATAAA	-31	NA	108736259	108800521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108736416_108747504_108747733_108781102_108781222_108786598_108786724_108797822
transcript_39425.known	chr4	+	1078	5	FSM	ENSMUSG00000003411.11	ENSMUST00000106651.9	1078	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	20.6458228220626	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACAACCTGCTTGTTTCCT	NA	False	NA	4	True	ATTAAA	-15	NA	108736396	108798382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108736416_108747504_108747733_108781102_108781222_108786598_108786751_108797822
transcript_39426.known	chr4	+	1053	4	FSM	ENSMUSG00000003411.11	ENSMUST00000003502.4	1053	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	6.34209919681348	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGCTTGTTTCCTATC	NA	False	NA	7	True	ATTAAA	-18	NA	108747486	108798385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108747733_108781102_108781222_108786598_108786724_108797822
transcript_39429.known	chr4	-	2871	24	FSM	ENSMUSG00000028559.18	ENSMUST00000030288.14	2871	24	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_18	119.667039647815	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTTCTTTCATT	NA	False	NA	-6	True	CATAAA	-20	NA	109059469	108918851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
transcript_39430.known	chr4	-	2903	24	FSM	ENSMUSG00000028559.18	ENSMUST00000194478.6	2903	24	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_19	122.628536784985	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCAACCTGGCAGCCTTTT	NA	False	NA	34	True	TTTAAA	-38	NA	109059431	108918811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108965077_108965147_108990940_108991018_109013851_109013931_109029470_109029522_109059301
transcript_39435.known	chr4	-	2408	23	FSM	ENSMUSG00000028559.18	ENSMUST00000162787.9	2408	23	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_17	111.643220473462	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCAGTTACAATTTTGACT	NA	False	NA	2	True	ATTAAA	-29	NA	109059469	108919275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108990940_108991018_109013851_109013931_109029470_109029522_109059301
transcript_39439.known	chr4	-	3134	21	FSM	ENSMUSG00000028559.18	ENSMUST00000084366.13	3134	21	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_18	113.002776514562	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGACTGCAGTTTATTT	NA	False	NA	NA	False	CATAAA	-38	NA	108975219	108918341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108948857_108948897_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
transcript_39441.known	chr4	-	2604	20	FSM	ENSMUSG00000028559.18	ENSMUST00000160271.8	2604	20	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_17	99.0531349615264	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTTTCTTTCATTGTTTT	NA	False	NA	-1	True	CATAAA	-25	NA	108975233	108918846	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_108919530_108919661_108919798_108920562_108920655_108921759_108921839_108922820_108922962_108923061_108923126_108923324_108923436_108924111_108924197_108925559_108925732_108929139_108929226_108930010_108930130_108930233_108930347_108940285_108940446_108943523_108943629_108944591_108944683_108955699_108955751_108957117_108957148_108958312_108958361_108959693_108959790_108975091
transcript_3945.nic	chr10	+	1361	6	ISM	ENSMUSG00000019843.15	ENSMUST00000146287.8	2135	13	75002	-68	-3353	0	3prime_fragment	FALSE	canonical	3	35	junction_1	37.717900259691	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCAGGACAGGTGTTTGG	NA	False	NA	NA	False	AATAAA	-27	NA	39405912	39440419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_39406071_39408011_39408192_39409629_39409707_39409804_39409959_39427382_39427515_39439759
transcript_39451.known	chr4	+	3784	33	FSM	ENSMUSG00000053510.13	ENSMUST00000106644.9	3784	33	0	0	0	0	multi-exon	FALSE	canonical	1	36	junction_3	173.040085222326	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAAAGACGTGTGTGCAT	NA	False	NA	39	True	AATAAA	-31	NA	108857966	108918358	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108858362_108870706_108871038_108873848_108873983_108874823_108874894_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
transcript_39453.known	chr4	+	4311	31	FSM	ENSMUSG00000053510.13	ENSMUST00000065977.11	4311	31	0	0	0	0	multi-exon	FALSE	canonical	1	202	junction_11	90.2713440442511	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTAACACTTGATTTTC	9940	False	NA	NA	False	AATAAA	-23	NA	108857851	108918974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108858362_108870706_108871038_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108889646_108889705_108890486_108890561_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
transcript_39457.known	chr4	+	4179	29	FSM	ENSMUSG00000053510.13	ENSMUST00000102736.9	4179	29	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	139.898300342697	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCTAACACTTGATTTTC	9940	False	NA	NA	False	AATAAA	-23	NA	108857851	108918974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_108858362_108870706_108871038_108875035_108875118_108876154_108876309_108881400_108881475_108884632_108884729_108885947_108886071_108891877_108891948_108895171_108895250_108896854_108896976_108897052_108897112_108897381_108897437_108900572_108900678_108901744_108901869_108903791_108903879_108904793_108904914_108906263_108906316_108908035_108908187_108911093_108911222_108912122_108912286_108913486_108913519_108913706_108913846_108915455_108915504_108915778_108915832_108916181_108916266_108916968_108917060_108917265_108917383_108917965_108918056_108918132
transcript_3946.nic	chr10	+	1220	5	NIC	ENSMUSG00000019843.15	novel	333	4	NA	NA	-133	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	54.9152756525905	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCAGGACAGGTGTTTGG	NA	False	NA	NA	False	AATAAA	-27	NA	39409132	39440419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_39409330_39409629_39409707_39409804_39409959_39427382_39427515_39439759
transcript_39460.nic	chr4	+	642	2	ISM	ENSMUSG00000053510.13	ENSMUST00000106644.9	3784	33	-147	47552	-32	-19109	5prime_fragment	FALSE	canonical	3	601	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGAGGAGGAAGAGGAAGA	9908	False	NA	41	True	NA	NA	NA	108857819	108870806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_108858362_108870706
transcript_39462.nnic	chr4	+	1761	9	NNC	ENSMUSG00000028558.15	novel	1606	8	NA	NA	-16169	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	5.12195031213697	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGGGGTTTTTCTTTTGT	NA	False	NA	NA	False	TATAAA	-17	NA	109075512	109111542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_109075716_109092970_109093073_109095974_109096179_109099353_109099449_109101248_109101459_109101885_109102000_109103344_109103489_109108523_109108617_109110946
transcript_39463.nnic	chr4	+	1987	9	NNC	ENSMUSG00000028558.15	novel	1606	8	NA	NA	-16169	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	5.12195031213697	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCTTGTCTTATTTCTA	NA	False	NA	4	True	TTTAAA	-21	NA	109075512	109111768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_109075716_109092970_109093073_109095974_109096179_109099353_109099449_109101248_109101459_109101885_109102000_109103344_109103489_109108523_109108617_109110946
transcript_39465.known	chr4	+	5190	25	FSM	ENSMUSG00000028552.14	ENSMUST00000102729.10	5190	25	0	0	0	0	multi-exon	TRUE	canonical	3	117	junction_16	21.9326225188771	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTATCTTGTCCTGTT	NA	False	NA	NA	False	AATAAA	-27	NA	109137464	109245014	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_109137642_109154383_109154426_109161947_109162038_109162873_109162922_109166321_109166418_109169500_109169567_109170074_109170201_109173041_109173102_109178324_109178415_109179266_109179413_109181264_109181422_109186888_109186975_109200480_109200554_109218359_109218522_109218866_109219065_109220375_109220577_109223320_109223438_109223614_109223706_109226141_109226178_109227738_109227876_109230419_109230490_109235461_109235539_109237063_109237227_109239981_109240164_109242515
transcript_39467.known	chr4	+	4468	19	FSM	ENSMUSG00000010517.8	ENSMUST00000102724.5	4468	19	0	0	0	0	multi-exon	FALSE	canonical	3	1050	junction_10	116.73236245551	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAAGTTGAAAAGCCCTT	NA	False	NA	NA	False	ATTAAA	-16	NA	109533784	109821157	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_109534270_109567986_109568056_109577952_109578000_109584586_109584790_109593787_109593880_109600062_109600155_109614776_109614883_109651964_109652052_109687002_109687099_109697512_109697640_109698505_109698570_109699484_109699567_109719005_109719161_109740832_109740970_109748098_109748188_109782494_109782576_109783081_109783160_109792679_109792896_109818995
transcript_39472.known	chr4	-	3761	6	FSM	ENSMUSG00000028546.18	ENSMUST00000106603.9	3761	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	6.48074069840786	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGCTTCCCAAATTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	110209106	110060933	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_110063857_110068622_110068849_110070324_110070479_110083741_110083846_110108477_110108719_110208993
transcript_39474.known	chr4	+	1448	6	FSM	ENSMUSG00000028545.14	ENSMUST00000129760.8	1448	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	5.19230199429887	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATAAGGCCTTTGCATTT	NA	False	NA	1	True	AATAAA	-13	NA	111272284	111317117	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_111272598_111288213_111288348_111290283_111290751_111305702_111305852_111311281_111311496_111316946
transcript_39475.known	chr4	+	1826	6	FSM	ENSMUSG00000028545.14	ENSMUST00000030274.7	1826	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	5.19230199429887	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTTGTTCTCATTTTTT	NA	False	NA	NA	False	AATAAA	-22	NA	111272202	111317495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_111272598_111288213_111288348_111290365_111290751_111305702_111305852_111311281_111311496_111316946
transcript_39476.known	chr4	+	2239	13	FSM	ENSMUSG00000034401.17	ENSMUST00000084354.4	2239	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_11	28.7691964897643	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCATCCACACTTTAAAGGGA	NA	False	NA	62	True	NA	NA	NA	111577401	111686381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_111577455_111603337_111603476_111604951_111605001_111624859_111624902_111625912_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127_111663180_111679937_111680030_111685382
transcript_39477.known	chr4	+	2466	13	FSM	ENSMUSG00000034401.17	ENSMUST00000038868.14	2466	13	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_2	15.2103309190388	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGGTATTTTCATAGGT	NA	False	NA	20	True	AATAAA	-35	NA	111577180	111686339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_111577455_111603337_111603476_111604951_111605001_111624859_111624902_111625912_111626038_111631995_111632077_111636196_111636491_111637951_111638040_111641999_111642041_111656266_111656452_111663127_111663228_111679937_111680030_111685382
transcript_39480.known	chr4	-	3170	6	FSM	ENSMUSG00000028719.9	ENSMUST00000030491.9	3170	6	0	0	0	0	multi-exon	FALSE	canonical	3	519	junction_1	39.0302446828098	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTGGTTCTGATATCTG	NA	False	NA	NA	False	AATAAA	-25	NA	114844438	114816532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_114818953_114820261_114820359_114820552_114820630_114822079_114822233_114826414_114826562_114844162
transcript_39482.known	chr4	+	5285	17	FSM	ENSMUSG00000028718.17	ENSMUST00000030490.13	5285	17	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_15	11.7923107892389	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAACTGACTTCTCTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	114857355	114900393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_114857545_114860044_114860130_114862069_114862178_114863878_114863992_114864332_114864521_114866467_114866716_114867260_114867345_114868990_114869078_114871270_114871422_114873368_114873485_114878671_114878787_114880678_114881615_114887065_114887235_114889839_114890069_114895534_114895728_114896264_114896516_114898370
transcript_39484.known	chr4	+	1119	4	FSM	ENSMUSG00000028716.16	ENSMUST00000030488.3	1119	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCACGGGCCTATTTCT	NA	False	NA	NA	False	NA	NA	NA	114945919	114951096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_114946410_114948338_114948448_114950117_114950214_114950672
transcript_39485.known	chr4	+	887	5	FSM	ENSMUSG00000028716.16	ENSMUST00000106548.9	887	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.87082869338697	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTCACGGGCCTATTTCT	NA	False	NA	NA	False	NA	NA	NA	114945919	114951096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_114946004_114946235_114946410_114948338_114948448_114950117_114950214_114950672
transcript_39488.known	chr4	+	2792	11	FSM	ENSMUSG00000034210.15	ENSMUST00000106525.9	2792	11	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_6	11.0657128102983	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCTCAGAATATGTCTTTT	NA	False	NA	141	True	NA	NA	NA	115594940	115631632	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_115596038_115597588_115597738_115603654_115603801_115610117_115610217_115613629_115613741_115616005_115616093_115617066_115617259_115619414_115619496_115621768_115621881_115623589_115623710_115631034
transcript_39491.nic	chr4	+	1570	3	ISM	ENSMUSG00000034210.15	ENSMUST00000132306.2	2368	4	-53	7168	-17	-7168	5prime_fragment	FALSE	canonical	3	142	junction_2	18	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACAAACAAACAAACAA	NA	False	NA	NA	False	NA	NA	NA	115594923	115603961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_115596038_115597588_115597738_115603654
transcript_39492.nic	chr4	+	2273	2	ISM	ENSMUSG00000034210.15	ENSMUST00000132306.2	2368	4	-53	12382	-17	-12382	5prime_fragment	FALSE	canonical	3	178	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGCTTAGAGAAGTTAAG	NA	False	NA	NA	False	NA	NA	NA	115594923	115598747	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_115596038_115597588
transcript_39494.known	chr4	+	2160	9	FSM	ENSMUSG00000028710.19	ENSMUST00000239030.2	2160	9	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_5	26.518566609076	151	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCCCACACCCCCACACAC	NA	False	NA	NA	False	NA	NA	NA	115642180	115669511	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_115642502_115645458_115645568_115647777_115647829_115648419_115648483_115652600_115652652_115653951_115654000_115655162_115655259_115657514_115657623_115668198
transcript_39495.known	chr4	+	2884	4	FSM	ENSMUSG00000028709.4	ENSMUST00000030477.4	2884	4	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	9.42809041582063	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGTGGGAAGTGGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	115685288	115693382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_115685439_115688419_115688887_115690829_115691033_115691318
transcript_39498.nnic	chr4	+	2360	3	NNC	ENSMUSG00000028709.4	novel	2884	4	NA	NA	3575	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	29	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGGTGGGAAGTGGTGT	NA	False	NA	NA	False	AATAAA	-19	NA	115689429	115693382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_115689523_115690829_115691033_115691318
transcript_3950.known	chr10	-	438	4	FSM	ENSMUSG00000087177.8	ENSMUST00000133302.8	438	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	8.65383665716478	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGGTGTGGCCTGGAC	5663	False	NA	NA	False	NA	NA	NA	39607997	39498693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_39498724_39508945_39509013_39557468_39557546_39607733
transcript_39504.nnic	chr4	+	2527	14	NNC	ENSMUSG00000028708.17	novel	2552	14	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	56.7430625533113	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696414	115736447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_115696439_115702818_115702863_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
transcript_39507.known	chr4	+	2552	14	FSM	ENSMUSG00000028708.17	ENSMUST00000106513.10	2552	14	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	55.5404857930697	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696429	115736447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_115696479_115702818_115702863_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
transcript_39509.nnic	chr4	+	2503	13	NNC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	0	0	at_least_one_novel_splicesite	TRUE	canonical	3	26	junction_1	42.5606593255112	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696394	115736447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_115696439_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
transcript_3951.known	chr10	-	1660	3	FSM	ENSMUSG00000087177.8	ENSMUST00000151921.8	1660	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	10.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAGTGTTTTTTCAGCAT	5658	False	NA	-1	True	AATAAA	-16	NA	39608002	39497409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_39498724_39557468_39557546_39607733
transcript_39510.known	chr4	+	2543	13	FSM	ENSMUSG00000028708.17	ENSMUST00000019677.12	2543	13	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	27.9607860325055	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCAGCCTTGGTGGT	NA	False	NA	10	True	AATAAA	-16	NA	115696394	115736447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115735146
transcript_39511.nnic	chr4	+	1544	13	NNC	ENSMUSG00000028708.17	novel	2543	13	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_12	47.0592858943789	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGGCAGCCTTGGTG	NA	False	NA	8	True	AATAAA	-14	NA	115696396	115736445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407_115730504_115731816_115732012_115732577_115732743_115733777_115733822_115736141
transcript_39520.known	chr4	+	1377	9	FSM	ENSMUSG00000028708.17	ENSMUST00000153766.8	1377	9	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	26.830195209875	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATGCTTATAGCGTGTC	NA	False	NA	NA	False	TTTAAA	-12	NA	115696419	115731067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115727507_115727564_115730407
transcript_39521.nic	chr4	+	716	8	NIC	ENSMUSG00000028708.17	novel	1377	9	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	62.8051733212987	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GCAAAAAAAAAAAAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	115696396	115724524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_115696479_115705416_115705560_115714228_115714331_115717216_115717315_115720173_115720254_115721735_115721810_115723658_115723764_115724492
transcript_39524.known	chr4	-	3827	15	FSM	ENSMUSG00000034171.14	ENSMUST00000049095.6	3827	15	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	8.32257809350258	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATAAGAGTGAATAAATAAT	NA	False	NA	NA	False	NA	NA	NA	115875123	115853865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_115855813_115856017_115856164_115856695_115856805_115857245_115857286_115857983_115858025_115858300_115858401_115859654_115859753_115860173_115860300_115861551_115861677_115861910_115861952_115862196_115862404_115862497_115862632_115862783_115862919_115865376_115865491_115874659
transcript_3953.known	chr10	+	2867	9	FSM	ENSMUSG00000019842.7	ENSMUST00000019987.7	2867	9	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	7.56534037568701	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTTCTTTTCTTTCTT	NA	False	NA	NA	False	TATAAA	-16	NA	39488929	39531303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_39489343_39501845_39502656_39510530_39510721_39515215_39515395_39517301_39517391_39521703_39521773_39522844_39522962_39526901_39526977_39530378
transcript_39531.known	chr4	-	2439	6	FSM	ENSMUSG00000028706.15	ENSMUST00000030475.3	2439	6	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_2	15.8417170786503	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCTTTCTTGAGATTTG	NA	False	NA	NA	False	ATTAAA	-38	NA	115911073	115890038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_115891509_115892948_115893074_115897265_115897427_115901881_115902037_115905526_115905862_115910880
transcript_39535.known	chr4	-	402	4	FSM	ENSMUSG00000063882.13	ENSMUST00000050580.11	402	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	490.539159157214	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7697	False	NA	-7	True	AATAAA	-17	NA	115932228	115924161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_115924370_115927059_115927117_115927933_115927955_115932112
transcript_39536.known	chr4	-	579	4	FSM	ENSMUSG00000063882.13	ENSMUST00000134760.2	579	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	488.184618993903	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7694	False	NA	-7	True	AATAAA	-17	NA	115932231	115924161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_115924370_115927059_115927222_115927864_115927955_115932112
transcript_39537.known	chr4	-	547	4	FSM	ENSMUSG00000063882.13	ENSMUST00000078676.6	547	4	0	0	0	0	multi-exon	FALSE	canonical	3	1017	junction_2	25.9272486435067	1620	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGTCCTTCCTTTGCC	7657	False	NA	-7	True	AATAAA	-17	NA	115932268	115924161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_115924370_115927059_115927222_115927933_115927955_115932112
transcript_3954.nnic	chr10	+	1289	9	NNC	ENSMUSG00000019842.7	novel	768	3	NA	NA	-8837	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	30.1307048540189	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGTTTATCTCAGTGG	NA	False	NA	5	True	AATAAA	-18	NA	39508292	39530821	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_39508350_39509687_39509758_39510530_39510721_39515215_39515395_39517301_39517391_39521703_39521773_39522844_39522962_39526901_39526977_39530378
transcript_39543.known	chr4	-	2780	19	FSM	ENSMUSG00000028702.16	ENSMUST00000102705.10	2780	19	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_18	87.8901706606913	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCTGGTGTTAGGCATTC	NA	False	NA	4	True	NA	NA	NA	115980882	115954112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980675
transcript_39544.nnic	chr4	-	2704	19	NNC	ENSMUSG00000028702.16	novel	2780	19	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	105	junction_18	100.421042627873	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980887	115954171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980346_115980697
transcript_39545.nnic	chr4	-	2958	19	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	1	19	junction_18	118.034272591366	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980886	115954171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980610
transcript_39546.nnic	chr4	-	2913	19	NNC	ENSMUSG00000028702.16	novel	3025	18	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	3	105	junction_18	100.421042627873	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980906	115954171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258_115980514_115980675
transcript_3955.known	chr10	-	3528	4	FSM	ENSMUSG00000096687.9	ENSMUST00000178563.3	3528	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	4.98887651569859	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTTGACTGCTTTGTAGCA	NA	False	NA	NA	False	AATAAA	-26	NA	39775234	39766008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_39768926_39770011_39770129_39770767_39770937_39774909
transcript_39550.known	chr4	+	3065	10	FSM	ENSMUSG00000028703.15	ENSMUST00000030471.9	3065	10	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_3	24.5573151707401	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCCTTCTTGATGATT	NA	False	NA	9	True	AATAAA	-17	NA	115932465	115954240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_115932805_115936585_115936673_115937745_115937817_115945643_115946767_115950068_115950330_115952073_115952239_115952329_115952429_115952988_115953112_115953339_115953416_115953519
transcript_39551.known	chr4	-	3025	18	FSM	ENSMUSG00000028702.16	ENSMUST00000102704.4	3025	18	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_11	50.1315225199974	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAATAAAGGCATGAAAGGGA	NA	False	NA	-55	True	AAGAAA	-38	NA	115980856	115954171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_115954569_115954654_115954819_115955681_115955862_115956136_115956216_115956534_115956659_115956833_115956945_115957464_115957596_115957735_115957811_115959025_115959153_115962954_115963106_115967165_115967291_115967514_115967804_115967883_115967954_115968387_115968524_115969677_115969739_115976034_115976155_115980092_115980180_115980258
transcript_39552.known	chr4	+	2719	22	FSM	ENSMUSG00000028700.15	ENSMUST00000106498.8	2719	22	0	0	0	0	multi-exon	TRUE	canonical	3	321	junction_9	36.7984644262092	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGGTGTATTTTGTAATA	NA	False	NA	6	True	ATTAAA	-16	NA	116007714	116017041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_116007815_116008261_116008441_116009016_116009132_116009273_116009393_116009905_116009972_116010059_116010174_116010747_116010866_116011038_116011138_116011288_116011417_116011738_116011810_116012027_116012104_116012259_116012344_116012425_116012468_116012656_116012716_116012925_116012999_116013082_116013212_116013292_116013419_116015089_116015155_116015348_116015394_116015619_116015756_116016179_116016290_116016376
transcript_39553.nnic	chr4	+	610	3	NNC	ENSMUSG00000028700.15	novel	557	3	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGTTCATGCATATAACT	NA	False	NA	NA	False	AATGAA	-36	NA	115981031	115996047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_115981314_115994842_115995026_115995902
transcript_39554.known	chr4	+	557	3	FSM	ENSMUSG00000028700.15	ENSMUST00000144311.2	557	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGGTTCATGCATATAACT	NA	False	NA	NA	False	AATGAA	-36	NA	115981036	115996047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_115981314_115994890_115995026_115995902
transcript_39555.known	chr4	-	5742	2	FSM	ENSMUSG00000028701.5	ENSMUST00000030469.5	5742	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATGCTTAAGTGTCTTCC	NA	False	NA	NA	False	NA	NA	NA	116001806	115989602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_115995032_116001493
transcript_39556.known	chr4	-	1985	8	FSM	ENSMUSG00000028699.10	ENSMUST00000030465.10	1985	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.48461497791618	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTTTGTTGTTTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	116024797	116019065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_116020233_116020503_116020588_116020824_116020978_116021058_116021158_116021263_116021339_116021515_116021723_116024204_116024270_116024662
transcript_39557.known	chr4	+	385	2	FSM	ENSMUSG00000078593.3	ENSMUST00000106492.3	385	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGTCTTACCCCATTCTG	NA	False	NA	NA	False	AATACA	-14	NA	116030568	116031487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_116030827_116031360
transcript_39559.known	chr4	+	2118	9	FSM	ENSMUSG00000028696.13	ENSMUST00000106479.8	2118	9	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_7	9.43977621556783	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTTAGCAACAGTACAA	NA	False	NA	NA	False	AATAAA	-19	NA	116364745	116395432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_116364848_116367718_116368061_116372264_116372697_116377855_116378012_116381382_116381551_116386867_116387006_116387609_116387733_116389754_116389976_116394996
transcript_39563.nic	chr4	+	1341	6	ISM	ENSMUSG00000028696.13	ENSMUST00000106479.8	2118	9	50	8374	47	-8374	5prime_fragment	FALSE	canonical	3	66	junction_1	8.66256313108309	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATTGTAGACATGTTCATT	NA	False	NA	NA	False	ATTAAA	-15	NA	116364795	116387058	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_116364848_116367718_116368061_116372264_116372697_116377855_116378012_116381382_116381551_116386867
transcript_39564.nic	chr4	+	1315	5	ISM	ENSMUSG00000028696.13	ENSMUST00000106479.8	2118	9	50	13717	47	-13717	5prime_fragment	FALSE	canonical	3	66	junction_1	9.20258115965298	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACCATCTCTTTGAACTTA	NA	False	NA	NA	False	AATAAA	-25	NA	116364795	116381715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_116364848_116367718_116368061_116372264_116372697_116377855_116378012_116381382
transcript_39567.known	chr4	-	1962	5	FSM	ENSMUSG00000055900.15	ENSMUST00000106478.9	1962	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	29.1150734156725	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGAGTTGCCTTGGTCAT	NA	False	NA	-108	True	NA	NA	NA	116413133	116408829	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_116409321_116409518_116409542_116409678_116410927_116411964_116412101_116413069
transcript_39570.nnic	chr4	-	1773	4	NNC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	-37	102	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	27.6204433144888	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTGGATTGTCTAAGCCT	NA	False	NA	-6	True	AATAAA	-27	NA	116413170	116408727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_116409420_116410082_116410927_116411964_116412101_116413069
transcript_39571.nic	chr4	-	2234	4	NIC	ENSMUSG00000055900.15	novel	1962	5	NA	NA	-37	98	intron_retention	FALSE	non_canonical	0	0	junction_1	27.6204433144888	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACTTCTGGATTGTCTAA	NA	False	NA	-10	True	AATAAA	-23	NA	116413170	116408731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_116409321_116409518_116410927_116411964_116412101_116413069
transcript_39573.known	chr4	-	974	3	FSM	ENSMUSG00000055900.15	ENSMUST00000069674.6	974	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	6.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTTTTTTTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	116413132	116410151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_116410927_116411964_116412101_116413069
transcript_39578.known	chr4	+	3588	12	FSM	ENSMUSG00000034042.17	ENSMUST00000030460.15	3588	12	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_2	28.7128847743677	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTTTTTTACTGAAGGAA	NA	False	NA	12	True	AATAAA	-18	NA	116414854	116451079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_116415026_116426360_116427379_116428067_116428181_116430590_116430721_116431533_116431812_116436443_116436517_116438446_116438641_116444567_116444709_116445775_116445941_116447362_116447488_116448425_116448529_116450002
transcript_3958.known	chr10	-	1296	10	FSM	ENSMUSG00000038510.13	ENSMUST00000183309.8	1296	10	0	0	0	0	multi-exon	FALSE	canonical	3	1057	junction_7	76.0030863570847	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATGTCACAGTGTGG	6557	False	NA	42	True	TTTAAA	-17	NA	40123032	40099422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40115743_40115784_40119851_40119890_40120580_40120714_40122948
transcript_39586.known	chr4	-	2520	16	FSM	ENSMUSG00000028693.16	ENSMUST00000030456.14	2520	16	0	0	0	0	multi-exon	TRUE	canonical	3	22	junction_15	334.076930594669	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCTTTGATGGCTTT	NA	False	NA	-7	True	AATAAA	-15	NA	116485138	116458805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116467599_116468575_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528_116484627_116485086
transcript_39591.known	chr4	-	2118	14	FSM	ENSMUSG00000028693.16	ENSMUST00000030457.12	2118	14	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_9	345.747385294336	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCCCTTGTTCTGGAATT	NA	False	NA	NA	False	AATAAA	-16	NA	116484694	116458248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_116458991_116459288_116459418_116459922_116460001_116460084_116460142_116461091_116461259_116461359_116461549_116461937_116462012_116462105_116462192_116462880_116462961_116469168_116469279_116471526_116471608_116476066_116476178_116479963_116480012_116484528
transcript_39594.known	chr4	-	1420	9	FSM	ENSMUSG00000028692.15	ENSMUST00000030455.15	1420	9	0	0	0	0	multi-exon	FALSE	canonical	3	1447	junction_3	104.145331148352	1864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGTTGTGTGCCTGACTTA	NA	False	NA	-1	True	AATAAA	-15	NA	116508877	116493706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_116493867_116494958_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
transcript_39600.known	chr4	-	2227	8	FSM	ENSMUSG00000028692.15	ENSMUST00000128010.2	2227	8	0	0	0	0	multi-exon	FALSE	canonical	3	1447	junction_2	89.468042407582	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACGTTGTGTGCCTGACTT	NA	False	NA	-2	True	AATAAA	-14	NA	116508593	116493707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_116495046_116495172_116495246_116496157_116496358_116497006_116497203_116498187_116498340_116499054_116499175_116502700_116502791_116508535
transcript_39608.known	chr4	+	2294	6	FSM	ENSMUSG00000028691.13	ENSMUST00000135573.8	2294	6	0	0	0	0	multi-exon	FALSE	canonical	3	22651	junction_3	699.316637868713	4663	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGAAGTTCATTGGGTATC	NA	False	NA	NA	False	AATAAA	-15	NA	116542740	116558019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_116542858_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
transcript_39612.known	chr4	+	877	6	FSM	ENSMUSG00000028691.13	ENSMUST00000106470.8	877	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9266.17147693696	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCCAGGCAGCATTGAGCA	NA	False	NA	NA	False	NA	NA	NA	116543083	116556469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_116543334_116544603_116544721_116548972_116549127_116550079_116550203_116550913_116551045_116556367
transcript_39616.known	chr4	+	553	2	FSM	ENSMUSG00000028691.13	ENSMUST00000156145.7	553	2	0	0	0	0	multi-exon	FALSE	canonical	3	23986	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACTGTAATTAAAAAAGTTT	NA	False	NA	NA	False	NA	NA	NA	116542795	116545094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_116542858_116544603
transcript_39618.known	chr4	-	2106	4	FSM	ENSMUSG00000028690.5	ENSMUST00000030453.5	2106	4	0	0	0	0	multi-exon	TRUE	canonical	3	184	junction_2	7.07106781186548	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATCATGTTTCCTTGAAC	NA	False	NA	NA	False	ACTAAA	-25	NA	116565603	116559475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_116561065_116561703_116561857_116563077_116563273_116565434
transcript_39626.nic	chr4	-	564	3	ISM	ENSMUSG00000028690.5	ENSMUST00000030453.5	2106	4	71	2110	-47	0	5prime_fragment	FALSE	canonical	3	184	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGCCCGGCTAGATTTTT	NA	False	NA	NA	False	AATATA	-39	NA	116565532	116561585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_116561857_116563077_116563273_116565434
transcript_39633.known	chr4	+	3033	11	FSM	ENSMUSG00000033985.18	ENSMUST00000045542.13	3033	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_7	8.01810451416044	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGAAATATGATTTTGC	NA	False	NA	3	True	ATTAAA	-16	NA	116578144	116661439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_116578454_116598812_116599116_116608301_116608424_116628996_116629046_116649284_116649432_116657729_116657813_116658356_116658442_116658645_116658730_116658916_116659004_116659420_116659539_116659793
transcript_39638.known	chr4	+	1112	10	FSM	ENSMUSG00000028689.15	ENSMUST00000106462.9	1112	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	24.3680624821877	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTTCTCTGTAAATCTT	5618	False	NA	15	True	AATAAA	-19	NA	116565767	116572300	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_116565854_116566458_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
transcript_39640.known	chr4	+	1237	10	FSM	ENSMUSG00000028689.15	ENSMUST00000155391.8	1237	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	25.0190051217859	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTCTCTGTAAATCTTG	5976	False	NA	16	True	AATAAA	-20	NA	116566125	116572301	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_116566292_116566439_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568482_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
transcript_39641.nic	chr4	+	1627	10	NIC	ENSMUSG00000028689.15	novel	1213	10	NA	NA	-12	0	intron_retention	FALSE	canonical	2	5	junction_8	24.2766971536772	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGATGTGTTCTCTGTAAA	5631	False	NA	11	True	AATAAA	-15	NA	116565780	116572296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_116566292_116566436_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571212_116571347_116572036
transcript_39642.known	chr4	+	1213	10	FSM	ENSMUSG00000028689.15	ENSMUST00000106464.3	1213	10	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	20.3239201040316	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGTTCTCTGTAAATCTT	5977	False	NA	15	True	AATAAA	-19	NA	116566126	116572300	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_116566292_116566436_116566471_116566634_116566817_116566920_116567003_116567297_116567482_116568507_116568576_116569568_116569637_116569919_116570024_116571284_116571347_116572036
transcript_39653.nic	chr4	-	1404	9	NIC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	38.7021882456277	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAACTTCATTCTTTGGTT	1943	False	NA	-10	True	TTTAAA	-32	NA	116664833	116661208	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_116661334_116662005_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
transcript_39654.nnic	chr4	-	1975	8	NNC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	4	0	intron_retention	FALSE	canonical	1	2	junction_3	42.5973075703723	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	1943	False	NA	0	True	TTTAAA	-42	NA	116664833	116661198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_116662253_116662328_116662492_116662682_116662832_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
transcript_39655.nnic	chr4	-	2012	8	NNC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	241	0	intron_retention	FALSE	canonical	2	4	junction_7	42.0500188065672	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	2272	False	NA	0	True	TTTAAA	-42	NA	116664504	116661198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664409
transcript_39656.known	chr4	-	2090	8	FSM	ENSMUSG00000028688.14	ENSMUST00000030451.10	2090	8	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_2	11.8252583351856	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	1939	False	NA	0	True	TTTAAA	-42	NA	116664837	116661198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116663957_116664664
transcript_39657.nic	chr4	-	2159	8	NIC	ENSMUSG00000028688.14	novel	2090	8	NA	NA	-24	0	intron_retention	FALSE	canonical	2	10	junction_7	40.0209129004794	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTTGGTTATTTCTTATC	1915	False	NA	0	True	TTTAAA	-42	NA	116664861	116661198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_116662253_116662328_116662492_116662682_116662943_116663181_116663341_116663455_116663553_116663682_116663724_116663813_116664002_116664664
transcript_39668.nnic	chr4	+	1854	18	NNC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_3	67.5934826202465	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664904	116676628	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_116664969_116668045_116668139_116668996_116669089_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
transcript_39672.nic	chr4	+	1762	17	NIC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	43.6183286446191	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664904	116676628	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_116664969_116668045_116668139_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
transcript_39676.nnic	chr4	+	1688	16	NNC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	-6	2	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_15	52.9651457721648	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTGTGTGTGTATAT	NA	False	NA	NA	False	AAGAAA	-23	NA	116664913	116675971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116675766
transcript_39677.known	chr4	+	1654	16	FSM	ENSMUSG00000028687.18	ENSMUST00000102699.8	1654	16	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	29.5893374188894	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664919	116676628	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
transcript_3968.known	chr10	-	799	8	FSM	ENSMUSG00000038510.13	ENSMUST00000181995.8	799	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	422.287550740256	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGAAGAAGCGACCTGCAGA	6590	False	NA	18	True	AATGAA	-5	NA	40122999	40099808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_40099917_40101292_40101438_40103554_40103658_40109103_40109204_40110817_40110895_40112118_40112201_40120580_40120714_40122948
transcript_39682.nic	chr4	+	1863	15	NIC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	-6	0	intron_retention	FALSE	canonical	3	103	junction_1	29.7890542834451	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664913	116676628	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675480_116676451
transcript_39683.nic	chr4	+	1586	15	NIC	ENSMUSG00000028687.18	novel	1654	16	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_4	52.7655577212319	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTTGGAGAACTTTCTG	NA	False	NA	26	True	AATAAA	-16	NA	116664913	116676628	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084_116675235_116675437_116675480_116676451
transcript_39686.nic	chr4	+	1543	14	ISM	ENSMUSG00000028687.18	ENSMUST00000102699.8	1654	16	-6	1292	-6	-633	5prime_fragment	FALSE	canonical	3	103	junction_1	30.7634609974947	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGCGGCTGACCATAGG	NA	False	NA	NA	False	NA	NA	NA	116664913	116675336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675003_116675084
transcript_39687.known	chr4	+	1931	14	FSM	ENSMUSG00000028687.18	ENSMUST00000124857.8	1931	14	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	30.7380611354533	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGAACTTTCTGGGCTTTC	NA	False	NA	33	True	AATAAA	-23	NA	116664934	116676635	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_116664969_116671515_116671634_116672760_116672910_116672995_116673036_116673158_116673233_116673509_116673552_116673632_116673705_116673779_116673894_116673974_116674073_116674151_116674297_116674376_116674432_116674580_116674773_116674865_116675480_116676451
transcript_39693.known	chr4	-	1804	1	FSM	ENSMUSG00000043155.5	ENSMUST00000055436.5	1804	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	101	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGAGCCTCTGTGTCTT	7088	False	NA	-6	True	AATAAA	-26	NA	116678904	116677100	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_116677100_116678900
transcript_39694.known	chr4	-	1489	10	FSM	ENSMUSG00000028684.15	ENSMUST00000030446.15	1489	10	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_9	15.6331398550769	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCCGGCTCCTTTGTTCCT	NA	False	NA	-8	True	NA	NA	NA	116851610	116847161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_116847646_116848428_116848496_116848589_116848691_116848817_116848956_116849760_116849923_116850022_116850221_116850444_116850508_116850584_116850665_116850781_116850895_116851527
transcript_39695.known	chr4	+	4583	21	FSM	ENSMUSG00000046861.10	ENSMUST00000050067.10	4583	21	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_7	8.68964901477614	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTATATATATGGATGTCTA	NA	False	NA	NA	False	ATTAAA	-19	NA	116852513	116862474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_116852969_116853143_116853305_116853557_116853651_116853728_116853865_116854110_116854227_116854314_116854429_116854544_116854628_116855573_116855740_116855940_116856023_116856774_116856958_116857085_116857139_116857285_116857351_116857443_116857548_116857793_116857914_116858018_116858109_116859312_116859520_116859706_116859837_116859933_116860009_116860130_116860213_116860315_116860388_116860478
transcript_39697.known	chr4	+	1555	12	FSM	ENSMUSG00000028683.15	ENSMUST00000106448.9	1555	12	0	0	0	0	multi-exon	TRUE	canonical	3	567	junction_7	49.9305302519377	463	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGCTCAGTGGTAGAG	NA	False	NA	20	True	AATAAA	-20	NA	116876598	116944049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_116876674_116879351_116879510_116885607_116885754_116901632_116901793_116909920_116910033_116915960_116916051_116922537_116922666_116923570_116923762_116925940_116926019_116927835_116927985_116938754_116938859_116943885
transcript_39709.known	chr4	-	1620	8	FSM	ENSMUSG00000073771.12	ENSMUST00000183310.2	1620	8	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_7	6.73401357108153	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAAGCTTTTCCTCCTGAG	9747	False	NA	NA	False	NA	NA	NA	116982815	116977371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_116978059_116978167_116978294_116978394_116978527_116978610_116978680_116979415_116979476_116980925_116980980_116981135_116981338_116982525
transcript_3971.known	chr10	-	887	6	FSM	ENSMUSG00000019837.9	ENSMUST00000019982.9	887	6	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_5	179.465205541353	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGACCTGGATTCGATTT	8581	False	NA	NA	False	NA	NA	NA	40133672	40125345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_40125828_40127151_40127266_40130259_40130305_40130396_40130461_40133208_40133290_40133571
transcript_39713.known	chr4	-	2378	15	FSM	ENSMUSG00000028680.15	ENSMUST00000076859.12	2378	15	0	0	0	0	multi-exon	TRUE	canonical	3	135	junction_10	17.1138146846699	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGAAGGCCTTATCATTCC	3219	False	NA	2	True	AATAAA	-15	NA	116991160	116985851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_116986376_116986482_116986597_116987156_116987287_116987439_116987603_116987704_116987789_116987920_116988015_116988258_116988351_116988569_116988697_116988806_116989006_116989097_116989194_116989923_116990012_116990101_116990232_116990385_116990503_116990591_116990700_116990848
transcript_39717.known	chr4	-	860	6	FSM	ENSMUSG00000047675.16	ENSMUST00000102696.5	860	6	0	0	0	0	multi-exon	FALSE	canonical	3	8358	junction_5	1894.95893359197	9511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGTGTTTGGAGAGGCTGG	NA	False	NA	-13	True	AATAAA	-30	NA	117013440	117011023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_117011185_117011495_117011626_117011834_117012011_117012204_117012305_117012767_117012875_117013254
transcript_39725.known	chr4	-	353	2	FSM	ENSMUSG00000047675.16	ENSMUST00000137423.2	353	2	0	0	0	0	multi-exon	FALSE	canonical	3	13045	junction_1	0	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTAGGTGTTTGGAG	NA	False	NA	-20	True	AATAAA	-23	NA	117011694	117011030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_117011185_117011495
transcript_39726.known	chr4	-	523	4	FSM	ENSMUSG00000047675.16	ENSMUST00000144051.8	523	4	0	0	0	0	multi-exon	FALSE	canonical	3	8358	junction_3	2305.8312070825	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGGCGACTTGGGGGGGG	NA	False	NA	NA	False	NA	NA	NA	117013266	117011706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_117012011_117012204_117012305_117012767_117012875_117013254
transcript_39728.known	chr4	-	2842	20	FSM	ENSMUSG00000028678.14	ENSMUST00000065896.9	2842	20	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_14	29.7897526488705	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGCAGATTCTGTGTGA	NA	False	NA	88	True	AATAAA	-17	NA	117039836	117016835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_117017580_117019206_117019312_117019409_117019516_117019799_117019868_117022338_117022450_117022554_117022760_117023508_117023652_117024077_117024170_117024245_117024310_117024490_117024582_117027031_117027195_117027281_117027337_117028913_117029010_117029481_117029583_117030798_117030919_117032082_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
transcript_39731.known	chr4	-	1009	5	FSM	ENSMUSG00000028678.14	ENSMUST00000141675.8	1009	5	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_2	14.142135623731	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAAAAAAAACAGCAGA	NA	False	NA	NA	False	NA	NA	NA	117039789	117031604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_117032206_117035117_117035167_117035341_117035444_117037768_117037864_117039627
transcript_39732.known	chr4	+	991	3	FSM	ENSMUSG00000048772.16	ENSMUST00000062824.12	991	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	3.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCTTTATCTATCCTGGGG	NA	False	NA	NA	False	AATAAA	-18	NA	117109147	117125777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_117109332_117123056_117123173_117125086
transcript_39733.known	chr4	-	1949	11	FSM	ENSMUSG00000028677.20	ENSMUST00000221654.2	1949	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	319.717437747771	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACAAGCTGCTGTCTGT	9570	False	NA	NA	False	ATTAAA	-6	NA	117146643	117128668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222_117146266_117146399
transcript_39734.nnic	chr4	-	1763	11	NNC	ENSMUSG00000028677.20	novel	1949	11	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	399.456881277567	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	9561	False	NA	NA	False	ATTAAA	-14	NA	117146652	117128660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222_117146266_117146602
transcript_39736.nic	chr4	-	1845	10	ISM	ENSMUSG00000028677.20	ENSMUST00000221654.2	1949	11	246	-8	85	0	3prime_fragment	TRUE	canonical	0	0	junction_5	318.755914977798	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	9816	False	NA	NA	False	ATTAAA	-14	NA	117146397	117128660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143047_117143170_117146222
transcript_39737.nic	chr4	-	1767	10	ISM	ENSMUSG00000028677.20	ENSMUST00000030439.15	3029	15	207852	1	85	0	3prime_fragment	FALSE	canonical	0	0	junction_5	365.792425790136	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCTGTGTTTGAAG	9816	False	NA	NA	False	ATTAAA	-14	NA	117146397	117128660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_117129573_117130249_117130325_117130443_117130553_117134567_117134647_117134778_117134835_117134939_117135027_117135203_117135301_117142575_117142709_117143125_117143170_117146222
transcript_39739.nnic	chr4	+	1389	9	NNC	ENSMUSG00000033423.17	novel	1336	8	NA	NA	-54	0	at_least_one_novel_splicesite	FALSE	canonical	3	99	junction_1	225.311693826574	101	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTGTGTCTGGAGCCA	NA	False	NA	9	True	AATAAA	-16	NA	117407507	117531478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_117407560_117410164_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
transcript_3974.known	chr10	-	3206	8	FSM	ENSMUSG00000075232.7	ENSMUST00000238969.2	3206	8	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_3	48.542848734549	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGTTTTCTGTTTGGTGT	NA	False	NA	-5	True	AATAAA	-29	NA	40178184	40163453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_40165466_40166113_40166270_40166373_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744
transcript_39742.known	chr4	+	1719	9	FSM	ENSMUSG00000033423.17	ENSMUST00000037127.15	1719	9	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_1	182.065535934179	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCTTGTGTCTAAGGC	NA	False	NA	25	True	AATAAA	-32	NA	117407561	117531494	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_117407928_117410164_117410241_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
transcript_39743.nnic	chr4	+	1345	8	NNC	ENSMUSG00000033423.17	novel	1336	8	NA	NA	-86	0	at_least_one_novel_splicesite	TRUE	canonical	3	100	junction_1	221.525785111774	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTGTGTCTGGAGCCA	NA	False	NA	9	True	AATAAA	-16	NA	117407475	117531478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_117407560_117421817_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
transcript_39746.nnic	chr4	+	1292	8	NNC	ENSMUSG00000033423.17	novel	1336	8	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	247.509142276006	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTGTGTCTGGAGCCA	NA	False	NA	9	True	AATAAA	-16	NA	117407522	117531478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_117407560_117421823_117422096_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
transcript_3975.known	chr10	-	1442	7	FSM	ENSMUSG00000075232.7	ENSMUST00000213620.2	1442	7	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_2	51.8183258016784	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATGAAGAAGAAAAAAC	NA	False	NA	NA	False	AAGAAA	-27	NA	40178182	40165319	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_40165466_40166113_40166612_40167989_40168033_40169159_40169263_40170176_40170304_40170712_40170800_40177744
transcript_39750.nnic	chr4	+	1036	7	NNC	ENSMUSG00000033423.17	novel	596	4	NA	NA	-55	0	at_least_one_novel_splicesite	FALSE	canonical	3	91	junction_1	242.081769931842	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGTGTGTCTGGAGCCA	NA	False	NA	9	True	AATAAA	-16	NA	117407506	117531478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_117407560_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117506503_117506604_117530937
transcript_39752.nnic	chr4	+	938	6	NNC	ENSMUSG00000033423.17	novel	596	4	NA	NA	-55	2	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	344.525993213865	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGTGTCTGGAGCCACC	NA	False	NA	11	True	AATAAA	-18	NA	117407506	117531480	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_117407560_117439796_117439914_117446294_117446355_117450267_117450360_117472365_117472439_117530937
transcript_39753.nnic	chr4	-	1546	11	NNC	ENSMUSG00000009640.12	novel	1566	11	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_10	69.5563800093133	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTGATTGTTTCCTCA	NA	False	NA	-40	True	AATAGA	-15	NA	117539418	117531882	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539180_117539373
transcript_39754.known	chr4	-	1566	11	FSM	ENSMUSG00000009640.12	ENSMUST00000102687.4	1566	11	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_10	49.3527101586124	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTGTTTCCTCACTTCC	NA	False	NA	-35	True	AATAGA	-20	NA	117539470	117531877	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539180_117539410
transcript_39755.nic	chr4	-	1572	11	NIC	ENSMUSG00000009640.12	novel	1566	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_10	51.6295458047037	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGCTGATTGTTTCCTCA	NA	False	NA	-40	True	AATAGA	-15	NA	117539470	117531882	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533333_117533546_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539191_117539410
transcript_39759.known	chr4	-	1771	10	FSM	ENSMUSG00000009640.12	ENSMUST00000135582.8	1771	10	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_9	54.4190416928251	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATTGTTTCCTCACTTCC	NA	False	NA	-35	True	AATAGA	-20	NA	117539450	117531877	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_117531992_117532217_117532514_117532623_117532697_117532928_117533001_117533146_117533715_117533805_117533965_117538039_117538236_117538470_117538563_117539029_117539191_117539410
transcript_39765.known	chr4	+	3479	14	FSM	ENSMUSG00000028542.18	ENSMUST00000030269.14	3479	14	0	0	0	0	multi-exon	FALSE	canonical	2	62	junction_6	13.9750411501337	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTGATGTGCTTTGTCT	NA	False	NA	27	True	AATGAA	-21	NA	117692247	117726502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_117692675_117700215_117700333_117713071_117713229_117713886_117714019_117714399_117714671_117720625_117720759_117720885_117721021_117721109_117721214_117721601_117721840_117721950_117722086_117722194_117722295_117722392_117722494_117724955_117725127_117725244
transcript_39769.known	chr4	-	1000	8	FSM	ENSMUSG00000033379.14	ENSMUST00000036380.14	1000	8	0	0	0	0	multi-exon	FALSE	canonical	3	2123	junction_7	187.196393650942	1165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGAGGCTTCTGTTGGCCCC	NA	False	NA	-1	True	AATAAA	-21	NA	117744526	117741522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743836_117744366
transcript_3977.nnic	chr10	-	3308	16	NNC	ENSMUSG00000038446.9	novel	3534	15	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	54.2694511980113	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGAGTTCATTGTG	NA	False	NA	-3	True	AATAAA	-19	NA	40759115	40707616	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_40708468_40708501_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695_40717812_40719037_40719140_40720956_40721003_40723125_40723201_40723919_40724060_40725740_40725838_40726925_40727066_40728492_40728577_40733542_40733673_40743819_40743907_40758882
transcript_39771.nic	chr4	-	1083	8	NIC	ENSMUSG00000033379.14	novel	1000	8	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_7	877.288982709616	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGAGGCTTCTGTTGG	NA	False	NA	-5	True	AATAAA	-17	NA	117744557	117741526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117743786_117743892_117744366
transcript_39776.known	chr4	-	935	7	FSM	ENSMUSG00000033379.14	ENSMUST00000150204.8	935	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	972.524449849748	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTCAGTGAGGCTTCTGT	NA	False	NA	-8	True	AATAAA	-14	NA	117744517	117741529	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000_117743071_117743264_117743343_117743472_117743557_117744366
transcript_39782.known	chr4	-	646	4	FSM	ENSMUSG00000033379.14	ENSMUST00000133530.8	646	4	0	0	0	0	multi-exon	FALSE	canonical	3	2536	junction_3	23.6690139681023	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCAGTGAGGCTTCTGTTGG	NA	False	NA	-5	True	AATAAA	-17	NA	117743091	117741526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_117741839_117742300_117742492_117742825_117742878_117743000
transcript_39783.known	chr4	-	2555	6	FSM	ENSMUSG00000028540.7	ENSMUST00000030265.4	2555	6	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_1	6.70522184569608	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACATTTGGGCCTAAACAAA	NA	False	NA	NA	False	AATAAA	-13	NA	117749229	117745839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_117746874_117746951_117747129_117747214_117747899_117748091_117748316_117748511_117748625_117748906
transcript_39784.nnic	chr4	-	2287	6	NIC	ENSMUSG00000028540.7	novel	2555	6	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_5	27.9399355761605	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGTTTCTCTTTATTCAC	NA	False	NA	-7	True	AATAAA	-15	NA	117749236	117746103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_117746874_117746951_117747129_117747214_117747899_117748091_117748316_117748511_117748625_117748917
transcript_39789.known	chr4	-	3595	20	FSM	ENSMUSG00000033365.15	ENSMUST00000036156.6	3595	20	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_19	11.8213853822033	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTCTGCCTCCTTTCTCTGT	NA	False	NA	0	True	AGTAAA	-19	NA	117772196	117751682	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_117751855_117751940_117752123_117752408_117752499_117752616_117752676_117752759_117752827_117754964_117755018_117757845_117757943_117758114_117758253_117758754_117758836_117760317_117760462_117760594_117760730_117760890_117760918_117760994_117761177_117761573_117761722_117761806_117761928_117762101_117762269_117762377_117762520_117762639_117762781_117768969_117769707_117771484
transcript_3979.known	chr10	-	3534	15	FSM	ENSMUSG00000038446.9	ENSMUST00000044166.9	3534	15	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_10	18.6027208894236	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGAGTTCATTGTG	NA	False	NA	-3	True	AATAAA	-19	NA	40759307	40707616	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_40709353_40710171_40710317_40712283_40712361_40717349_40717484_40717695_40717812_40719037_40719140_40720956_40721003_40723125_40723201_40723919_40724060_40725740_40725838_40726925_40727066_40728492_40728577_40733542_40733673_40743819_40743907_40758882
transcript_39790.known	chr4	-	2225	12	FSM	ENSMUSG00000028538.13	ENSMUST00000106410.8	2225	12	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_11	18.1899981599189	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCCTCCTGTTGTTTTC	1862	False	NA	-5	True	AATAAA	-14	NA	117992111	117789354	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_117790334_117797206_117797354_117797550_117797698_117815624_117815812_117816271_117816368_117817194_117817259_117821526_117821622_117871901_117871995_117889036_117889080_117911846_117911895_117964745_117964891_117991930
transcript_39795.known	chr4	-	4663	22	FSM	ENSMUSG00000033326.16	ENSMUST00000106406.9	4663	22	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_21	11.6270464270502	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGACTGTGGTCTGCCCC	NA	False	NA	-1	True	AATAAA	-16	NA	118037240	117994153	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_117995568_117995681_117995775_117996066_117996187_117999579_117999751_118001095_118001282_118001569_118001679_118003277_118003334_118003755_118003833_118004194_118004400_118005881_118006064_118010386_118010508_118017330_118017702_118018851_118019052_118019591_118019840_118021575_118021714_118022043_118022148_118023581_118023632_118025581_118025776_118027118_118027234_118032750_118032927_118034591_118034774_118037089
transcript_39796.known	chr4	+	936	8	FSM	ENSMUSG00000006395.17	ENSMUST00000194248.2	936	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	6.43333157097011	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATATGTGTATATTACAG	NA	False	NA	NA	False	ATTAAA	-16	NA	118217186	118219941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_118217429_118217502_118217587_118218812_118218928_118219070_118219150_118219237_118219288_118219387_118219458_118219559_118219695_118219780
transcript_39797.known	chr4	+	1296	1	FSM	ENSMUSG00000006395.17	ENSMUST00000179719.2	1296	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	AATACA	-12	NA	118217195	118218491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_118217200_118218500
transcript_39799.known	chr4	+	1145	7	FSM	ENSMUSG00000006392.17	ENSMUST00000019229.15	1145	7	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_1	88.2754527349226	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	False	NA	32	True	NA	NA	NA	118266562	118272308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_118266584_118268081_118268201_118268854_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
transcript_39803.known	chr4	+	1134	7	FSM	ENSMUSG00000006392.17	ENSMUST00000084319.11	1134	7	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_2	198.998673920763	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGCCATTCCTTGTCCTA	NA	False	NA	32	True	NA	NA	NA	118266533	118272308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_118266584_118268081_118268201_118268894_118269000_118269548_118269690_118269860_118269943_118270823_118271073_118271920
transcript_39810.known	chr4	-	1793	10	FSM	ENSMUSG00000006398.16	ENSMUST00000006565.13	1793	10	0	0	0	0	multi-exon	TRUE	canonical	3	1043	junction_4	200.755117703013	870	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCCAGCATCCTTCCTAC	NA	False	NA	-11	True	AATAAA	-17	NA	118294549	118290097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_118290339_118290677_118290796_118291947_118292074_118292669_118292899_118292973_118293069_118293165_118293363_118293456_118293586_118293706_118293804_118293890_118294040_118294137
transcript_39816.known	chr4	+	1811	8	FSM	ENSMUSG00000006390.16	ENSMUST00000006557.13	1811	8	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_5	11.9505785019225	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTTGTTCAACGGATGC	NA	False	NA	NA	False	AATAAA	-20	NA	118285289	118290150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_118285413_118287692_118287753_118287911_118288103_118288259_118288341_118288462_118288520_118288605_118288712_118288793_118288931_118289094
transcript_39817.known	chr4	+	1248	7	FSM	ENSMUSG00000006390.16	ENSMUST00000102673.11	1248	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	45.4376862673853	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGATTGTGTGTGTGTG	NA	False	NA	1	True	ATTAAA	-14	NA	118285321	118289810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_118285413_118287692_118287753_118288259_118288341_118288462_118288520_118288605_118288712_118288793_118288931_118289094
transcript_3982.known	chr10	-	3282	23	FSM	ENSMUSG00000038417.5	ENSMUST00000043814.5	3282	23	0	0	0	0	multi-exon	FALSE	canonical	3	326	junction_19	28.6394298502739	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGGTTTTGCTTCTGACT	NA	False	NA	-25	True	AATAAA	-17	NA	41179256	41064167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_41064696_41096894_41096982_41102917_41103001_41104102_41104299_41106002_41106087_41108102_41108251_41109547_41109607_41116500_41116640_41127712_41127880_41129635_41129785_41130839_41130886_41132416_41132534_41134010_41134145_41139064_41139163_41139880_41140044_41141381_41141483_41143682_41143812_41146294_41146444_41148953_41149005_41153353_41153511_41161285_41161410_41161596_41161696_41178982
transcript_39821.known	chr4	+	958	3	FSM	ENSMUSG00000028536.13	ENSMUST00000030261.6	958	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTTTTTATATTTTTC	8940	False	NA	NA	False	NA	NA	NA	118384439	118387425	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_118384535_118386395_118386509_118386675
transcript_39823.known	chr4	-	1864	4	FSM	ENSMUSG00000050854.10	ENSMUST00000060214.10	1864	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4.18993502999218	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGTCTGCACCATGGCA	8325	False	NA	NA	False	AATAAA	-23	NA	118400925	118398137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_118399569_118399797_118399958_118400552_118400697_118400796
transcript_39824.known	chr4	-	929	4	FSM	ENSMUSG00000050854.10	ENSMUST00000128098.8	929	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	2.44948974278318	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGACCCTGGCTGGGCTGG	8009	False	NA	NA	False	NA	NA	NA	118401241	118399055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_118399569_118399797_118399958_118400552_118400697_118401129
transcript_39825.known	chr4	-	717	2	FSM	ENSMUSG00000050854.10	ENSMUST00000150044.2	717	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGGCCCTGCTGGTTCT	9091	False	NA	NA	False	NA	NA	NA	118400159	118399213	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_118399569_118399797
transcript_39829.known	chr4	+	2960	9	FSM	ENSMUSG00000028729.16	ENSMUST00000030501.15	2960	9	0	0	0	0	multi-exon	FALSE	canonical	3	2261	junction_5	110.190105612981	2283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGTCATGATGTCTGTT	NA	False	NA	6	True	NA	NA	NA	118477995	118484973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_118478195_118478278_118478363_118478557_118478731_118479266_118479391_118480494_118480585_118480807_118480884_118481331_118481426_118482719_118482883_118483016
transcript_39837.known	chr4	+	805	3	FSM	ENSMUSG00000028729.16	ENSMUST00000130219.2	805	3	0	0	0	0	multi-exon	FALSE	canonical	3	2481	junction_2	26.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTAGTTGGTGTGTCTGTC	NA	False	NA	NA	False	AATAAA	-40	NA	118478044	118479128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_118478195_118478278_118478363_118478557
transcript_39839.known	chr4	+	729	2	FSM	ENSMUSG00000028729.16	ENSMUST00000149837.2	729	2	0	0	0	0	multi-exon	FALSE	canonical	3	2534	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGGTTCTTGGTCGCCGTT	NA	False	NA	NA	False	NA	NA	NA	118478046	118478859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_118478195_118478278
transcript_39840.known	chr4	+	3260	10	FSM	ENSMUSG00000028645.12	ENSMUST00000030398.10	3260	10	0	0	0	0	multi-exon	TRUE	canonical	3	565	junction_3	58.8236535946402	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGAATTTTCCCTGCATACA	576	False	NA	NA	False	TATAAA	-8	NA	118965907	118995180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_118966170_118977587_118977684_118989319_118989481_118989639_118989881_118990293_118990457_118990548_118990737_118991051_118991157_118991565_118991668_118992925_118993130_118993442
transcript_39843.known	chr4	-	1588	2	FSM	ENSMUSG00000045268.14	ENSMUST00000106355.5	1588	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTACTTATTTGGGGA	NA	False	NA	2	True	AGTAAA	-19	NA	119031392	119026709	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_119028240_119031334
transcript_39844.known	chr4	-	241	2	FSM	ENSMUSG00000045268.14	ENSMUST00000154226.2	241	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCGAGGAAGGAGAAGGGG	NA	False	NA	NA	False	NA	NA	NA	119031053	119028192	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_119028240_119030859
transcript_39845.known	chr4	+	733	3	FSM	ENSMUSG00000028643.12	ENSMUST00000030395.9	733	3	0	0	0	0	multi-exon	FALSE	canonical	3	443	junction_2	4.5	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTTCTTGCTTTAGAG	NA	False	NA	11	True	AATAAA	-14	NA	119052502	119058495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_119052684_119053068_119053219_119058093
transcript_39848.known	chr4	-	7151	5	FSM	ENSMUSG00000078584.10	ENSMUST00000141112.2	7151	5	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_4	34.1869858279434	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGCTTGTTCCCCGACT	NA	False	NA	NA	False	NA	NA	NA	119089909	119077038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_119083725_119083997_119084130_119085223_119085311_119089550_119089667_119089779
transcript_39855.nnic	chr4	-	594	4	NIC	ENSMUSG00000078584.10	novel	441	5	NA	NA	-5	174	combination_of_known_splicesites	FALSE	canonical	3	9	junction_3	174.450247603404	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGATGATGTAGCTGCTG	NA	False	NA	NA	False	NA	NA	NA	119089887	119083404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_119083725_119083997_119084130_119085223_119085311_119089832
transcript_39856.known	chr4	+	924	5	FSM	ENSMUSG00000066058.12	ENSMUST00000084309.12	924	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.11803398874989	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGACATCATCCTATCTG	3305	False	NA	NA	False	NA	NA	NA	119112610	119117052	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_119112993_119114082_119114248_119114348_119114434_119116004_119116158_119116913
transcript_39857.known	chr4	+	4168	4	FSM	ENSMUSG00000066058.12	ENSMUST00000094823.4	4168	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAAGACCCCCCGGGGTTTG	3400	False	NA	NA	False	AATAAA	-8	NA	119112705	119119635	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_119112993_119114082_119114248_119114348_119114434_119116004
transcript_39869.known	chr4	-	800	10	FSM	ENSMUSG00000060288.14	ENSMUST00000106318.8	800	10	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_8	163.771144144263	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTCTGTAGTTACTATT	9582	False	NA	-3	True	AATAAA	-19	NA	119177743	119157206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_119157381_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
transcript_39870.known	chr4	-	757	10	FSM	ENSMUSG00000060288.14	ENSMUST00000056458.14	757	10	0	0	0	0	multi-exon	TRUE	canonical	2	32	junction_8	169.629516415942	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTCTGTAGTTACTATT	9644	False	NA	-3	True	AATAAA	-19	NA	119177681	119157206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_119157400_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
transcript_39871.known	chr4	-	1288	10	FSM	ENSMUSG00000060288.14	ENSMUST00000106321.9	1288	10	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_8	172.260640876149	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTACCTTGTCTAGCCTG	9644	False	NA	-2	True	NA	NA	NA	119177681	119164356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_119165081_119167955_119168045_119168728_119168770_119169415_119169504_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
transcript_39873.known	chr4	-	622	8	FSM	ENSMUSG00000060288.14	ENSMUST00000106319.8	622	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	123.382928068576	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTTCTGTAGTTACTATT	9631	False	NA	-3	True	AATAAA	-19	NA	119177694	119157206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_119157381_119167955_119168045_119174224_119174318_119175740_119175784_119176716_119176762_119177026_119177051_119177365_119177431_119177605
transcript_39874.known	chr4	-	3909	15	FSM	ENSMUSG00000028637.17	ENSMUST00000238759.2	3909	15	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	6.79285338741071	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGAGGGCGAATGTTCA	9723	False	NA	NA	False	NA	NA	NA	119272718	119179662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_119181391_119181737_119181806_119188319_119188435_119188678_119188816_119190776_119190919_119196957_119197071_119206926_119207072_119210266_119210422_119213834_119214045_119216754_119216935_119250738_119250855_119255364_119255437_119258196_119258348_119261270_119261462_119272332
transcript_39875.nic	chr4	-	1861	9	NIC	ENSMUSG00000028637.17	novel	1312	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	4.28478412525065	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGTGTTAGTAATTTC	9730	False	NA	NA	False	NA	NA	NA	119272711	119209442	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_119209850_119210266_119210422_119213834_119214045_119216754_119216935_119250738_119250855_119255364_119255437_119258196_119258348_119261270_119261462_119272332
transcript_39877.known	chr4	-	1128	4	FSM	ENSMUSG00000028637.17	ENSMUST00000131141.3	1128	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	4.92160768674447	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGGTGTTAGTAATTT	2105	False	NA	NA	False	NA	NA	NA	119217111	119209443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_119209850_119210266_119210422_119213834_119214045_119216754
transcript_39878.known	chr4	-	2523	15	FSM	ENSMUSG00000028637.17	ENSMUST00000063642.10	2523	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	6.95062763279662	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTAATTGTTTGATATAC	9723	False	NA	NA	False	ATTAAA	-22	NA	119272718	119181042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_119181391_119181737_119181806_119188319_119188435_119188678_119188816_119190776_119190919_119196957_119197071_119206926_119207072_119210266_119210422_119213834_119214045_119216754_119216935_119250738_119250855_119255364_119255437_119258196_119258342_119261270_119261462_119272332
transcript_39880.known	chr4	-	1443	3	FSM	ENSMUSG00000028636.15	ENSMUST00000030385.13	1443	3	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_2	22	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCGGGTTTCTGGTTTTTT	5505	False	NA	-4	True	AATAAA	-30	NA	119279617	119275726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_119276491_119278776_119278881_119279042
transcript_39881.known	chr4	-	954	3	FSM	ENSMUSG00000028636.15	ENSMUST00000106316.2	954	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	146.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCGGGTTTCTGGTTTTTT	5549	False	NA	-4	True	AATAAA	-30	NA	119279573	119275726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_119276491_119278776_119278881_119279487
transcript_39882.known	chr4	-	1543	2	FSM	ENSMUSG00000028636.15	ENSMUST00000140641.2	1543	2	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCGGGTTTCTGGTTTTTT	5567	False	NA	-4	True	AATAAA	-30	NA	119279555	119275726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_119276491_119278776
transcript_39883.known	chr4	+	1115	4	FSM	ENSMUSG00000028634.18	ENSMUST00000141605.8	1115	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGCATTATTATTACCA	NA	False	NA	NA	False	ATTAAA	-32	NA	119590980	119730534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_119591060_119671874_119671988_119729233_119729470_119729847
transcript_39884.known	chr4	+	1359	3	FSM	ENSMUSG00000028634.18	ENSMUST00000136547.2	1359	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATGCATTATTATTACCA	NA	False	NA	NA	False	ATTAAA	-32	NA	119671551	119730534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_119671988_119729233_119729470_119729847
transcript_39885.known	chr4	+	3353	17	FSM	ENSMUSG00000000085.17	ENSMUST00000000087.13	3353	17	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_13	8.94776508408664	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGTGTCTTTTTAACCAG	NA	False	NA	12	True	AATAAA	-14	NA	120262503	120387381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_120262654_120304229_120304359_120310440_120310504_120310948_120310973_120319209_120319353_120320271_120320343_120325431_120325667_120335198_120335288_120340786_120341031_120362480_120362711_120365282_120365410_120372270_120372472_120374082_120374275_120379651_120379847_120382194_120382261_120385352_120385496_120386330
transcript_39886.known	chr4	+	1536	5	FSM	ENSMUSG00000000085.17	ENSMUST00000136801.8	1536	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	26.8735464723211	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGTGTCTTTTTAACCAG	NA	False	NA	12	True	AATAAA	-14	NA	120374822	120387381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_120374904_120379651_120379847_120382194_120382261_120385352_120385496_120386330
transcript_39889.known	chr4	-	2705	19	FSM	ENSMUSG00000028633.8	ENSMUST00000030381.8	2705	19	0	0	0	0	multi-exon	TRUE	canonical	3	663	junction_8	52.1791784782653	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTGTGCTTTCTCTTGTC	NA	False	NA	-18	True	AATAAA	-14	NA	120427473	120397064	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_120397852_120398489_120398579_120399059_120399205_120399727_120399825_120399906_120399963_120400924_120401022_120402214_120402259_120404502_120404566_120405251_120405347_120406660_120406750_120410076_120410210_120411142_120411295_120415475_120415557_120415982_120416067_120418594_120418712_120419974_120420076_120422465_120422637_120424446_120424625_120427347
transcript_3989.nnic	chr10	+	2956	8	NNC	ENSMUSG00000019826.12	novel	2844	7	NA	NA	-25	6	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_7	38.0542040907387	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACTTGATCTTTATCAAAAA	NA	False	NA	10	True	AATAAA	-22	NA	41326353	41341576	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_41326527_41327084_41328065_41331023_41331192_41331668_41331753_41332527_41332612_41338274_41338357_41339957_41340039_41340272
transcript_39897.known	chr4	-	2006	10	FSM	ENSMUSG00000032897.18	ENSMUST00000120779.8	2006	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	134.081235740792	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	-1	True	AATAAA	-20	NA	120672909	120614634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120672658
transcript_39898.nnic	chr4	-	1891	10	NNC	ENSMUSG00000032897.18	novel	2006	10	NA	NA	473	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_9	130.985815837507	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	-1	True	AATAAA	-20	NA	120682408	120614634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682272
transcript_39899.known	chr4	-	1932	10	FSM	ENSMUSG00000032897.18	ENSMUST00000043429.12	1932	10	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_8	23.5424491839793	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	-1	True	AATAAA	-20	NA	120682903	120614634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120638668_120638741_120647573_120647687_120682726
transcript_3990.known	chr10	+	2844	7	FSM	ENSMUSG00000019826.12	ENSMUST00000080771.10	2844	7	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_6	14.3807355707403	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGATACTTGATCTTTAT	NA	False	NA	4	True	AATAAA	-16	NA	41326378	41341570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_41326527_41327084_41328065_41331023_41331192_41331668_41331753_41332527_41332612_41338274_41338357_41340272
transcript_39902.nic	chr4	-	1895	9	NIC	ENSMUSG00000032897.18	novel	1932	10	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_7	133.008399640775	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTGTCTGGGACATT	NA	False	NA	-1	True	AATAAA	-20	NA	120682938	120614634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_120615494_120616528_120616589_120618824_120618933_120622410_120622570_120625922_120626097_120630868_120630965_120636316_120636431_120647573_120647687_120682726
transcript_39905.nic	chr4	-	1889	3	NIC	ENSMUSG00000028629.10	novel	1996	2	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	46.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGATGTTTGTGTG	NA	False	NA	-9	True	AATAAA	-22	NA	120782221	120778392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_120778610_120778735_120779894_120781707
transcript_39906.known	chr4	-	1996	2	FSM	ENSMUSG00000028629.10	ENSMUST00000030375.9	1996	2	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	0	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGATGTTTGTGTG	NA	False	NA	-9	True	AATAAA	-22	NA	120782202	120778392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_120779894_120781707
transcript_39907.known	chr4	-	914	2	FSM	ENSMUSG00000028629.10	ENSMUST00000156836.2	914	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTCCCCATCGCCACAAAAG	NA	False	NA	NA	False	NA	NA	NA	120782214	120779465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_120779873_120781707
transcript_39910.known	chr4	-	2362	6	FSM	ENSMUSG00000064141.15	ENSMUST00000106280.8	2362	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	16.2898741554378	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACTGATTTACAGATTAG	6836	False	NA	NA	False	NA	NA	NA	120808896	120787333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_120788704_120791529_120791629_120792263_120792391_120804485_120804767_120806528_120806758_120808640
transcript_39912.nnic	chr4	-	990	5	NNC	ENSMUSG00000064141.15	novel	2362	6	NA	NA	-39	-3624	at_least_one_novel_splicesite	TRUE	non_canonical	3	37	junction_2	4.20565096031518	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACATCCTTGTTTGCTTGCT	6797	False	NA	NA	False	NA	NA	NA	120808935	120792127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_120792391_120804485_120804596_120804673_120804767_120806528_120806758_120808640
transcript_39913.known	chr4	+	2924	32	FSM	ENSMUSG00000028626.6	ENSMUST00000030372.6	2924	32	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	8.6239508704552	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTTCTTGTGGATGAGG	NA	False	NA	21	True	AATAAA	-22	NA	120896581	120912519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_120896984_120898161_120898237_120899490_120899527_120899612_120899676_120900892_120900947_120901058_120901095_120901191_120901216_120901471_120901526_120901861_120901916_120902019_120902068_120902195_120902253_120902337_120902392_120902680_120902735_120903122_120903177_120903266_120903321_120903425_120903480_120906858_120906913_120907272_120907327_120907551_120907606_120908410_120908456_120908847_120908902_120909164_120909219_120909423_120909478_120909554_120909627_120909777_120909814_120909949_120909995_120910087_120910121_120910254_120910402_120910635_120910691_120910966_120911156_120911449_120911528_120911792
transcript_39915.known	chr4	-	3429	10	FSM	ENSMUSG00000043207.11	ENSMUST00000058754.9	3429	10	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_3	24.0005143977796	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCCTGGTGTTGGGTTTGA	NA	False	NA	-1	True	ATTAAA	-20	NA	120955438	120916433	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_120918418_120923010_120923155_120925906_120926012_120931669_120931855_120938368_120938511_120940017_120940171_120940505_120940623_120944505_120944593_120952748_120952896_120955073
transcript_39920.known	chr4	-	6242	8	FSM	ENSMUSG00000049878.14	ENSMUST00000056635.13	6242	8	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	23.3290569453457	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTTTACTCATAGAGTCT	6464	False	NA	-1	True	AATAAA	-18	NA	121072281	121003079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_121008220_121012052_121012195_121016388_121016526_121027814_121028018_121039802_121039936_121045411_121045494_121047300_121047456_121072031
transcript_39923.known	chr4	-	2768	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106257.10	2768	13	0	0	0	0	multi-exon	FALSE	canonical	3	357	junction_12	172.387322297462	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTGATGTTTTCAGTA	NA	False	NA	-7	True	AATAAA	-25	NA	122779849	122752839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779606
transcript_39924.known	chr4	-	2737	13	FSM	ENSMUSG00000028656.15	ENSMUST00000106255.8	2737	13	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_12	193.312139642945	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACCTGATGTTTTCAGTA	NA	False	NA	-7	True	AATAAA	-25	NA	122779837	122752839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_122754011_122755726_122755871_122756197_122756281_122756415_122756540_122756693_122756879_122758373_122758552_122758962_122759069_122761277_122761364_122761445_122761590_122763486_122763565_122765189_122765291_122766124_122766250_122779625
transcript_39925.nnic	chr4	+	1244	10	NNC	ENSMUSG00000028657.15	novel	2573	10	NA	NA	-13	-87	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	96.4254973708193	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGGTATCATTTTCAGT	NA	False	NA	16	True	AATAAA	-14	NA	122730021	122752784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225_122742329_122747383_122747475_122748172_122748272_122749598_122749671_122751302_122751478_122752540
transcript_39928.known	chr4	+	2381	9	FSM	ENSMUSG00000028657.15	ENSMUST00000030412.11	2381	9	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_2	20.6579282601136	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTCTGTATAATTTTAAG	NA	False	NA	103	True	ACTAAA	-25	NA	122730034	122752871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225_122742329_122747383_122747475_122748172_122748272_122749598_122749671_122751302
transcript_39933.known	chr4	+	986	5	FSM	ENSMUSG00000028657.15	ENSMUST00000121870.8	986	5	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_2	15.8015030930605	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCTCGATGTAGTGGTAG	NA	False	NA	NA	False	AATAAA	-32	NA	122730038	122742768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_122730173_122737787_122737898_122738210_122738339_122739763_122739835_122742225
transcript_39934.known	chr4	-	2151	14	FSM	ENSMUSG00000028655.12	ENSMUST00000030408.12	2151	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.06587742004239	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGCTTCTATTTGTG	9706	False	NA	NA	False	CATAAA	-16	NA	122854981	122840642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_122841098_122842324_122842502_122842593_122842738_122843059_122843173_122843271_122843356_122843944_122844029_122844206_122844329_122844453_122844545_122844983_122845142_122845581_122845661_122845782_122845922_122850524_122850650_122853062_122853195_122854733
transcript_39936.known	chr4	+	2074	11	FSM	ENSMUSG00000028653.17	ENSMUST00000102649.4	2074	11	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_3	10.336343647538	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGCTGCATTGTCAAT	NA	False	NA	26	True	AATAAA	-30	NA	122910389	122948742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122940667_122940811_122942561_122942674_122942944_122943058_122943269_122943348_122945858_122945969_122946276_122946395_122947915
transcript_39939.known	chr4	+	1964	10	FSM	ENSMUSG00000028653.17	ENSMUST00000147165.8	1964	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_8	29.573929126016	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGCTGCATTGTCAAT	NA	False	NA	26	True	AATAAA	-30	NA	122910389	122948742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122940667_122940811_122942561_122942674_122942944_122943058_122943269_122943348_122946276_122946395_122947915
transcript_3994.known	chr10	+	2476	2	FSM	ENSMUSG00000019826.12	ENSMUST00000216656.2	2476	2	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCTTTAGACTCTTCAGT	NA	False	NA	NA	False	AATAAA	-16	NA	41326430	41329464	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_41326527_41327084
transcript_39941.nic	chr4	+	1989	10	NIC	ENSMUSG00000028653.17	novel	2074	11	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_6	30.5593936983356	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGCTGCATTGTCAAT	NA	False	NA	26	True	AATAAA	-30	NA	122910361	122948742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122940667_122940811_122942561_122942674_122943269_122943348_122945858_122945969_122946276_122946395_122947915
transcript_39945.nnic	chr4	+	1846	9	NIC	ENSMUSG00000028653.17	novel	2074	11	NA	NA	-28	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_4	42.1070065428546	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCATGCTGCATTGTCAAT	NA	False	NA	26	True	AATAAA	-30	NA	122910361	122948742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_122910577_122933238_122933380_122937505_122937605_122938283_122938430_122942561_122942674_122943269_122943348_122945858_122945969_122946276_122946395_122947915
transcript_3995.known	chr10	+	3563	24	FSM	ENSMUSG00000019823.18	ENSMUST00000019967.16	3563	24	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_2	27.5095446574272	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGGTTTATGCTCTGTGCT	9093	False	NA	29	True	AATAAA	-18	NA	41352309	41363026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_41352537_41354005_41354311_41354423_41354632_41354958_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
transcript_39950.nic	chr4	-	1312	10	NIC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	-53	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_6	304.035816603534	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGCCTCCTGCAAGTTG	NA	False	NA	-14	True	AATAAA	-25	NA	123033797	123020907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030593_123030692_123031318_123031363_123032658_123032758_123033694
transcript_39953.known	chr4	-	1188	10	FSM	ENSMUSG00000028651.13	ENSMUST00000030404.5	1188	10	0	0	0	0	multi-exon	TRUE	canonical	3	832	junction_9	90.3078411481501	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGCCTCCTGCAAGTTG	NA	False	NA	-14	True	AATAAA	-25	NA	123033744	123020907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123029471_123030664_123030692_123031318_123031363_123032658_123032758_123033694
transcript_39956.nic	chr4	-	2383	9	NIC	ENSMUSG00000028651.13	novel	1188	10	NA	NA	-1	0	intron_retention	FALSE	canonical	3	832	junction_8	93.9161860384034	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTGCCTCCTGCAAGTTG	NA	False	NA	-14	True	AATAAA	-25	NA	123033745	123020907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_123021240_123021430_123021574_123024161_123024348_123027026_123027151_123028847_123028949_123029388_123030692_123031318_123031363_123032658_123032758_123033694
transcript_39959.known	chr4	-	1288	1	FSM	ENSMUSG00000102997.2	ENSMUST00000194481.2	1288	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACACCCCCACAGTGAGAGG	NA	False	NA	NA	False	AATAAA	-20	NA	123010479	123009191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_123009200_123010500
transcript_39961.known	chr4	+	3050	15	FSM	ENSMUSG00000011257.20	ENSMUST00000106241.8	3050	15	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_10	103.994922364272	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATGCCAGTTTTATGTT	NA	False	NA	8	True	AATAAA	-31	NA	123176624	123192625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189067_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
transcript_39962.nnic	chr4	+	2285	15	NNC	ENSMUSG00000011257.20	novel	3019	15	NA	NA	498	0	at_least_one_novel_splicesite	FALSE	canonical	3	86	junction_14	92.6910602650613	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGCTGAATTTGATGCCA	NA	False	NA	-2	True	AATAAA	-21	NA	123177385	123192615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191845_123192305
transcript_39963.known	chr4	+	3019	15	FSM	ENSMUSG00000011257.20	ENSMUST00000080178.13	3019	15	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_1	59.8703105189263	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATGCCAGTTTTATGTT	NA	False	NA	8	True	AATAAA	-31	NA	123176703	123192625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_123177601_123180472_123180667_123182751_123182868_123183991_123184132_123184663_123184759_123185525_123185664_123186656_123186753_123188364_123188638_123188785_123188874_123188994_123189115_123189542_123189630_123189722_123189851_123191471_123191566_123191653_123191887_123192305
transcript_39964.nnic	chr4	+	485	3	NNC	ENSMUSG00000087307.2	novel	678	3	NA	NA	-2743	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_2	10.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCCAGCCGCCTTTTATT	NA	False	NA	NA	False	NA	NA	NA	123556930	123562520	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_123557174_123561402_123561541_123562416
transcript_39965.nnic	chr4	+	514	3	NNC	ENSMUSG00000087307.2	novel	678	3	NA	NA	-2743	-159	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_1	5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTGGTCATTATCTTA	NA	False	NA	NA	False	NA	NA	NA	123556930	123564844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_123557174_123561402_123561541_123564711
transcript_39966.nnic	chr4	+	680	3	NNC	ENSMUSG00000087307.2	novel	431	2	NA	NA	-2743	0	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_1	5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGACCATTGTGGTTCAC	NA	False	NA	9	True	NA	NA	NA	123556930	123565010	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_123557174_123561402_123561541_123564711
transcript_39967.nnic	chr4	+	754	3	NNC	ENSMUSG00000087307.2	novel	431	2	NA	NA	-2672	145	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_1	5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATCAAACCTCATTGGGCA	NA	False	NA	NA	False	GATAAA	-25	NA	123557001	123565155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_123557174_123561402_123561541_123564711
transcript_39968.known	chr4	+	431	2	FSM	ENSMUSG00000087307.2	ENSMUST00000138861.2	431	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGACCATTGTGGTTCAC	NA	False	NA	9	True	NA	NA	NA	123561408	123565010	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_123561541_123564711
transcript_39969.nnic	chr4	-	487	3	NNC	ENSMUSG00000028648.14	novel	525	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_2	1049	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGCTTTTGGGTCA	1847	False	NA	-25	True	AATAAA	-17	NA	123611980	123606502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_123606720_123609656_123609852_123611905
transcript_39970.known	chr4	-	599	3	FSM	ENSMUSG00000028648.14	ENSMUST00000106206.8	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	1021.5	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTTGCTTTTGGGTCA	1848	False	NA	-25	True	AATAAA	-17	NA	123611979	123606502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_123606720_123609656_123609875_123611815
transcript_39972.known	chr4	-	350	3	FSM	ENSMUSG00000028648.14	ENSMUST00000137312.2	350	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	1039.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCCCTCCACCTCACCAT	1853	False	NA	NA	False	AAGAAA	-32	NA	123611974	123606661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_123606720_123609656_123609875_123611900
transcript_39974.known	chr4	+	1217	8	FSM	ENSMUSG00000043333.13	ENSMUST00000053202.12	1217	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	8.27092275778864	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACCAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123681667	123723697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_123681765_123703706_123703970_123708035_123708185_123711656_123711770_123716549_123716651_123718653_123718715_123720630_123720693_123723326
transcript_39976.known	chr4	+	1685	5	FSM	ENSMUSG00000028647.14	ENSMUST00000030400.14	1685	5	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_4	22.6163657557973	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTTCTTTCTTTTTGGT	NA	False	NA	40	True	NA	NA	NA	123798624	123806062	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_123798881_123799026_123799100_123803426_123803476_123803629_123803760_123804885
transcript_39980.known	chr4	+	1536	4	FSM	ENSMUSG00000028647.14	ENSMUST00000106202.4	1536	4	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_3	15.9652400197707	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTGCCCCATAGCTTG	NA	False	NA	NA	False	AATAAA	-17	NA	123798706	123804869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_123798881_123799026_123799100_123803426_123803476_123803629
transcript_39983.known	chr4	-	1603	8	FSM	ENSMUSG00000028907.8	ENSMUST00000030738.8	1603	8	0	0	0	0	multi-exon	FALSE	canonical	3	1259	junction_4	134.593264834372	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATCCTTGTGTGTGTGTG	NA	False	NA	NA	False	TATAAA	-16	NA	124587393	124571952	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_124572780_124573494_124573606_124575985_124576117_124576205_124576300_124577027_124577142_124577545_124577649_124579881_124579944_124587232
transcript_39984.known	chr4	+	1664	6	FSM	ENSMUSG00000032643.13	ENSMUST00000038684.6	1664	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.93907194296653	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGCCCCGTGTATTTG	NA	False	NA	4	True	AATAAA	-15	NA	124594512	124602404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_124594645_124599405_124599583_124599676_124599852_124601046_124601217_124601309_124601524_124601608
transcript_39987.known	chr4	+	1820	17	FSM	ENSMUSG00000028902.5	ENSMUST00000030734.5	1820	17	0	0	0	0	multi-exon	FALSE	canonical	3	1027	junction_12	104.342509913266	872	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTATGAATTTTTTGTT	NA	False	NA	51	True	AATAAA	-38	NA	124608568	124626253	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_124608784_124609061_124609110_124609444_124609498_124609602_124609709_124610243_124610317_124612120_124612213_124615816_124615900_124616670_124616810_124617463_124617533_124618551_124618620_124618867_124618976_124620771_124620842_124621866_124622032_124622111_124622223_124623251_124623343_124625163_124625220_124625980
transcript_39988.known	chr4	+	3809	24	FSM	ENSMUSG00000028894.19	ENSMUST00000094782.10	3809	24	0	0	0	0	multi-exon	FALSE	non_canonical	1	6	junction_2	64.214933278441	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGGTTCTCTCTTTTTTT	NA	False	NA	22	True	AATATA	-30	NA	124635642	124695304	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_124635710_124636256_124636384_124636728_124636824_124637428_124637527_124637666_124637697_124639864_124639976_124645104_124645486_124671133_124671231_124674163_124674332_124676182_124676285_124677680_124677796_124678103_124678221_124678965_124679154_124680310_124680423_124681264_124681375_124682861_124682998_124685298_124685410_124685985_124686149_124686966_124687203_124689148_124689263_124691617_124691703_124692044_124692173_124693560_124693673_124694498
transcript_39989.known	chr4	+	7631	11	FSM	ENSMUSG00000028890.14	ENSMUST00000030723.3	7631	11	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	11.1103555298649	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGTCACAGTCCAGCCAC	319	False	NA	NA	False	NA	NA	NA	124696341	124743593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_124696437_124698452_124698909_124713997_124714237_124715020_124715153_124718079_124718154_124718838_124718976_124724911_124724990_124731490_124731594_124732111_124732711_124736320_124736385_124737939
transcript_39995.known	chr4	+	724	4	FSM	ENSMUSG00000028889.18	ENSMUST00000144851.3	724	4	0	0	0	0	multi-exon	FALSE	canonical	3	495	junction_1	37.6061460697879	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGGAAAACACTACATCGAT	2206	False	NA	NA	False	NA	NA	NA	124745143	124748271	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_124745601_124745692_124745813_124747666_124747810_124748267
transcript_39998.known	chr4	-	1223	3	FSM	ENSMUSG00000078570.11	ENSMUST00000185036.2	1223	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	68	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTGACTGACCTTTCTT	7189	False	NA	-7	True	ATTAAA	-16	NA	124744989	124743282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_124743756_124744024_124744227_124744441
transcript_39999.known	chr4	+	781	2	FSM	ENSMUSG00000028890.14	ENSMUST00000147452.2	781	2	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTGAATTCATGTTTATA	352	False	NA	4	True	AATAAA	-15	NA	124696374	124699171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_124696437_124698452
transcript_4.known	ERCC-00009	+	968	1	FSM	ERCC-00009A	DQ668364	968	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	459	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00009_+_0_1000
transcript_40.known	ERCC-00112	+	1120	1	FSM	ERCC-00112A	DQ459422	1120	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	37	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00112_+_0_1100
transcript_40000.known	chr4	-	761	3	FSM	ENSMUSG00000078570.11	ENSMUST00000125776.8	761	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	71	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACTGACCTTTCTTTTCT	7724	False	NA	-3	True	ATTAAA	-20	NA	124744454	124743278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_124743756_124744024_124744227_124744372
transcript_40002.nnic	chr4	-	1541	11	NNC	ENSMUSG00000028873.17	novel	1626	10	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	207	junction_10	436.918573649599	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTCGGTCATCTGCATT	NA	False	NA	-10	True	AATAAA	-26	NA	124830713	124812257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381_124830522_124830609
transcript_40004.known	chr4	-	1626	10	FSM	ENSMUSG00000028873.17	ENSMUST00000084296.10	1626	10	0	0	0	0	multi-exon	FALSE	canonical	3	1430	junction_6	123.940846105444	1365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTCGGTCATCTGCATT	NA	False	NA	-10	True	AATAAA	-26	NA	124830710	124812257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_124812824_124813405_124813493_124814051_124814179_124815004_124815098_124815792_124815858_124817509_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
transcript_40013.known	chr4	-	645	5	FSM	ENSMUSG00000028873.17	ENSMUST00000125801.8	645	5	0	0	0	0	multi-exon	FALSE	canonical	3	1430	junction_1	172.905140178076	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACATGGGCTTCTCTGGCA	NA	False	NA	NA	False	AATACA	-42	NA	124830574	124817416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_124817626_124820457_124820531_124824864_124824906_124830147_124830277_124830381
transcript_40014.known	chr4	+	1203	3	FSM	ENSMUSG00000044730.18	ENSMUST00000233530.2	1203	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	13	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTCTGTTTTCTGCTTTT	NA	False	NA	NA	False	AAGAAA	-26	NA	124830850	124833247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_124830884_124830971_124831127_124832232
transcript_40019.known	chr4	+	2366	16	FSM	ENSMUSG00000028869.14	ENSMUST00000030684.8	2366	16	0	0	0	0	multi-exon	FALSE	canonical	3	650	junction_4	51.4673575083168	237	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGGAACTGTGTTCGCTT	NA	False	NA	24	True	ATTAAA	-18	NA	124923784	124949169	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_124923988_124928030_124928116_124929007_124929103_124931314_124931455_124934729_124934915_124936406_124936474_124937357_124937517_124938016_124938131_124940038_124940168_124941295_124941401_124942139_124942299_124942472_124942587_124946196_124946649_124947247_124947328_124947934_124948021_124948976
transcript_4002.known	chr10	-	1602	10	FSM	ENSMUSG00000019822.13	ENSMUST00000019965.13	1602	10	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_9	17.8020667408847	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTCTACCTTGTTCCTT	NA	False	NA	0	True	AATAAA	-20	NA	41366336	41363167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41364306_41364428_41364512_41364729_41364820_41364926_41365021_41365270_41365348_41365459_41365557_41365978
transcript_40028.known	chr4	+	1054	8	FSM	ENSMUSG00000028863.14	ENSMUST00000184205.8	1054	8	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	102.612805025016	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGCCATTCTCTTGTTT	NA	False	NA	-10	True	NA	NA	NA	124978956	125003507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125001444_125001503_125002115_125002150_125003091
transcript_40031.known	chr4	+	4550	7	FSM	ENSMUSG00000028863.14	ENSMUST00000154689.8	4550	7	0	0	0	0	multi-exon	TRUE	canonical	3	173	junction_5	63.7427555796648	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAACTGCTGATACTGAAAT	NA	False	NA	NA	False	NA	NA	NA	124978926	125007031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125002115_125002150_125003091
transcript_40032.nic	chr4	+	1070	6	NIC	ENSMUSG00000028863.14	novel	872	6	NA	NA	-41	379	combination_of_known_junctions	FALSE	canonical	3	30	junction_5	120.208818312135	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGCATCAACAGATTCTT	NA	False	NA	14	True	ATTAAA	-20	NA	124978885	124997675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_124997222
transcript_40033.known	chr4	+	872	6	FSM	ENSMUSG00000028863.14	ENSMUST00000055213.11	872	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	98.9605982196955	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGGGCAGCTGCCTCTTT	NA	False	NA	40	True	ACTAAA	-16	NA	124978943	125003682	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_124979060_124979937_124980054_124983667_124983756_124983894_124983941_124996631_124996825_125003369
transcript_40036.known	chr4	+	937	8	FSM	ENSMUSG00000028861.14	ENSMUST00000030675.8	937	8	0	0	0	0	multi-exon	FALSE	canonical	3	1282	junction_7	51.9186962510439	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGAATGATGGAAGATGG	NA	False	NA	27	True	AATAAA	-12	NA	125940717	125949325	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_125940993_125941226_125941272_125942427_125942507_125944272_125944322_125945117_125945203_125947292_125947352_125948753_125948946_125949172
transcript_4004.nic	chr10	-	1893	9	NIC	ENSMUSG00000019822.13	novel	1602	10	NA	NA	-18	0	intron_retention	FALSE	canonical	3	150	junction_8	17.8465682975747	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTAGTGGCTCTACCTTG	NA	False	NA	-6	True	AATAAA	-14	NA	41366383	41363173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_41363579_41363667_41363822_41363988_41364094_41364172_41364306_41364428_41364512_41364729_41364820_41364926_41365348_41365459_41365557_41365978
transcript_40042.known	chr4	+	1037	5	FSM	ENSMUSG00000028861.14	ENSMUST00000138739.8	1037	5	0	0	0	0	multi-exon	FALSE	canonical	3	1302	junction_3	49.8566695638608	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTACCTCCTGTCTTGGA	NA	False	NA	NA	False	NA	NA	NA	125940769	125945758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_125940993_125941226_125941272_125942427_125942507_125944272_125944322_125945117
transcript_40045.known	chr4	+	1473	11	FSM	ENSMUSG00000042616.9	ENSMUST00000143712.3	1473	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9.32148056909416	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCTTCCCCATTATTCTC	2402	False	NA	7	True	AATATA	-17	NA	125952396	125982457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_125952586_125958742_125958773_125967597_125967753_125970509_125970678_125971128_125971210_125976674_125976779_125977388_125977518_125978185_125978256_125980335_125980476_125981498_125981563_125982114
transcript_40046.known	chr4	+	5013	10	FSM	ENSMUSG00000042616.9	ENSMUST00000035497.5	5013	10	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	4.26296135405575	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGTGAGTCGGTGAT	2363	False	NA	NA	False	AATAAA	-15	NA	125952357	125985988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_125952586_125967597_125967753_125970509_125970678_125971128_125971210_125976674_125976779_125977388_125977518_125978185_125978256_125980335_125980476_125981498_125981563_125982114
transcript_40047.known	chr4	-	393	1	FSM	ENSMUSG00000079942.6	ENSMUST00000116058.3	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	22	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCACACCCCGGAAGCAA	NA	False	NA	NA	False	NA	NA	NA	125964052	125963659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_125963700_125964100
transcript_40048.known	chr4	+	429	2	FSM	ENSMUSG00000042616.9	ENSMUST00000129968.2	429	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCCAGACCTTCCCCATTA	NA	False	NA	2	True	AATATA	-12	NA	125981471	125982452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_125981563_125982114
transcript_40049.known	chr4	+	352	2	FSM	ENSMUSG00000050188.9	ENSMUST00000151831.2	352	2	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGAGCAGCAGCTGCAGATC	NA	False	NA	NA	False	NA	NA	NA	125990452	125991925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_125990501_125991621
transcript_40050.known	chr4	+	943	2	FSM	ENSMUSG00000050188.9	ENSMUST00000055575.8	943	2	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	0	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGTGCCTGATGCCCTG	NA	False	NA	30	True	CATAAA	-21	NA	125990415	125992377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_125990603_125991621
transcript_40051.known	chr4	+	1364	3	FSM	ENSMUSG00000050212.5	ENSMUST00000106152.3	1364	3	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_1	47.5	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGTCTCTCACTGGTTAC	6601	False	NA	21	True	AATGAA	-16	NA	126041795	126043668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_126042425_126042743_126042839_126043028
transcript_40052.known	chr4	+	1689	3	FSM	ENSMUSG00000050212.5	ENSMUST00000052876.3	1689	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	143	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCAGTCTCTCACTGGTTA	6342	False	NA	20	True	AATGAA	-15	NA	126041536	126043667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_126042425_126042676_126042839_126043028
transcript_40053.nnic	chr4	+	891	2	NIC	ENSMUSG00000050212.5	novel	1144	2	NA	NA	-161	0	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	0	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTGGCGACTCAGTCTCT	6969	False	NA	11	True	AATGAA	-6	NA	126042163	126043658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_126042425_126043028
transcript_40054.known	chr4	-	1859	12	FSM	ENSMUSG00000073758.11	ENSMUST00000094760.9	1859	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	4.41260403618604	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCAGTCTGGTCCTTGTGG	2003	False	NA	0	True	AGTAAA	-21	NA	126056419	126044394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_126044590_126044669_126044728_126044809_126045667_126045816_126045912_126045998_126046052_126046133_126046228_126054260_126054304_126055127_126055215_126055315_126055417_126055527_126055574_126055760_126055817_126056245
transcript_40063.known	chr4	-	4378	11	FSM	ENSMUSG00000043962.17	ENSMUST00000080919.12	4378	11	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_10	137.634443363571	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6674	False	NA	-3	True	AATAAA	-28	NA	126096553	126057874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_126059411_126060723_126060868_126061262_126061459_126065486_126065675_126067236_126067322_126069128_126069241_126069976_126070150_126071654_126072351_126073704_126074608_126080227_126080382_126096362
transcript_40075.nnic	chr4	-	1813	5	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	325.07797141609	64	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6748	False	NA	-3	True	AATAAA	-28	NA	126096479	126057874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_126059411_126060723_126060756_126080341_126080382_126088109_126088198_126096362
transcript_40078.nnic	chr4	-	1740	4	NNC	ENSMUSG00000043962.17	novel	4378	11	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	360.371413344005	63	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGACTGTGTTTGTTGCTTG	6733	False	NA	-3	True	AATAAA	-28	NA	126096494	126057874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_126059411_126060723_126060756_126080341_126080382_126096362
transcript_40080.nic	chr4	-	2400	4	NIC	ENSMUSG00000043962.17	novel	339	5	NA	NA	-16	0	intron_retention	FALSE	canonical	3	517	junction_3	151.240059361122	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGTATCCTAAATAACTT	6748	False	NA	NA	False	AGTAAA	-12	NA	126096479	126072566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_126074608_126080227_126080382_126088109_126088198_126096362
transcript_40081.known	chr4	-	2238	3	FSM	ENSMUSG00000043962.17	ENSMUST00000151728.2	2238	3	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_2	228	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGTATCCTAAATAACTT	6822	False	NA	NA	False	AGTAAA	-12	NA	126096405	126072566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_126074608_126080227_126080382_126096362
transcript_40083.known	chr4	+	1336	5	FSM	ENSMUSG00000028847.9	ENSMUST00000030660.9	1336	5	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_3	21.2882009573378	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCCTGTTTTCCTTCT	7625	False	NA	45	True	AATAAA	-25	NA	126156117	126169676	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_126156331_126166470_126166569_126166767_126166868_126167682_126167866_126168934
transcript_40084.nic	chr4	+	2122	4	NIC	ENSMUSG00000028847.9	novel	1336	5	NA	NA	29	0	intron_retention	FALSE	canonical	3	373	junction_3	14.0554457615387	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCCTGTTTTCCTTCT	7654	False	NA	45	True	AATAAA	-25	NA	126156146	126169676	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_126156331_126166470_126166569_126166767_126167866_126168934
transcript_40087.known	chr4	-	1672	6	FSM	ENSMUSG00000042558.17	ENSMUST00000102617.5	1672	6	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_3	41.9218320210365	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATGTCCTGTTCCTGTCTC	7076	False	NA	NA	False	AATAAA	-20	NA	126215496	126209839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_126210659_126211095_126211197_126211512_126211698_126211776_126211985_126212191_126212289_126215234
transcript_40091.known	chr4	-	1826	4	FSM	ENSMUSG00000042558.17	ENSMUST00000128188.8	1826	4	0	0	0	0	multi-exon	FALSE	canonical	3	330	junction_1	27.3901847788988	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAGCATGTCCTGTTCCT	7312	False	NA	NA	False	AATAAA	-15	NA	126215260	126209844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_126210659_126211095_126211985_126212191_126212289_126215234
transcript_40092.nic	chr4	-	1641	11	NIC	ENSMUSG00000028845.16	novel	1542	11	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_7	3.61247837363769	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGGCTCTTTTCTGCTAC	3340	False	NA	NA	False	AATAAA	-15	NA	126219232	126215913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_126216213_126216364_126216445_126216612_126216757_126216912_126217021_126217149_126217265_126217431_126217576_126218022_126218229_126218386_126218513_126218595_126218802_126218926_126218997_126219089
transcript_40095.nic	chr4	-	1312	7	NIC	ENSMUSG00000028842.16	novel	625	4	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_2	7.32006375199925	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCATTGTCCTTTCATAA	2378	False	NA	NA	False	ATTAAA	-18	NA	126323335	126269470	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_126269734_126270699_126270835_126296957_126297095_126297997_126298207_126301534_126301656_126311020_126311193_126323060
transcript_40096.known	chr4	+	5027	26	FSM	ENSMUSG00000042489.16	ENSMUST00000048391.15	5027	26	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	26.925794324402	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTGTCCAGCTCTAGTG	NA	False	NA	30	True	AATAAA	-23	NA	126450727	126487696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_126450931_126453000_126453110_126453711_126454146_126455550_126455713_126457699_126457778_126458725_126458799_126459482_126459592_126459763_126460375_126466071_126466264_126466928_126467102_126468433_126468610_126468887_126468953_126469638_126469836_126470134_126470290_126471405_126471636_126472115_126472228_126474752_126474829_126475224_126475323_126479630_126479796_126479897_126480020_126481350_126481479_126484332_126484436_126484976_126485060_126485387_126485550_126486444_126486595_126486835
transcript_40097.known	chr4	+	608	3	FSM	ENSMUSG00000042489.16	ENSMUST00000147675.2	608	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	24	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTGGAGAAAGAGGAGAGAAC	NA	False	NA	NA	False	NA	NA	NA	126450787	126454079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_126450919_126453000_126453110_126453711
transcript_40100.known	chr4	+	859	6	FSM	ENSMUSG00000028837.9	ENSMUST00000030642.3	859	6	0	0	0	0	multi-exon	FALSE	canonical	3	3349	junction_3	129.102439945959	1341	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGGGTTTGGCCTTA	5380	False	NA	19	True	AATAAA	-21	NA	126571422	126603507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_126571639_126577914_126578038_126580821_126580893_126599850_126600014_126601346_126601397_126603271
transcript_40104.known	chr4	-	3681	7	FSM	ENSMUSG00000028833.14	ENSMUST00000030637.14	3681	7	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_6	31.1216252074913	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGGTCTGCCTTGCAC	NA	False	NA	-1	True	NA	NA	NA	126647202	126637542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_126639065_126640338_126640482_126640888_126641114_126642270_126642513_126643677_126644647_126645733_126645875_126646763
transcript_40105.known	chr4	+	4384	21	FSM	ENSMUSG00000028830.15	ENSMUST00000047431.11	4384	21	0	0	0	0	multi-exon	FALSE	canonical	2	36	junction_1	9.66643677887566	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTGGCTATGAGGTTGTG	NA	False	NA	18	True	ATTAAA	-18	NA	126647562	126748129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_126647789_126650691_126650862_126685567_126686089_126708048_126708296_126710165_126710268_126717436_126717535_126722593_126722682_126724122_126724216_126725882_126726016_126729263_126729493_126730427_126730552_126731079_126731213_126733391_126733541_126734438_126734591_126734898_126735038_126736268_126736429_126740150_126740294_126740933_126741057_126741569_126741661_126742603_126742696_126746958
transcript_40108.known	chr4	+	3465	10	FSM	ENSMUSG00000028820.14	ENSMUST00000030623.8	3465	10	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_1	123.17016233199	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGATTTCTTCCCAGTGT	NA	False	NA	26	True	AATAAA	-22	NA	126915116	126925029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_126916014_126916608_126916798_126917059_126917362_126917466_126917563_126919647_126919845_126919935_126920021_126920561_126920680_126921060_126921110_126921189_126921312_126923619
transcript_4011.known	chr10	+	3292	23	FSM	ENSMUSG00000019823.18	ENSMUST00000099934.11	3292	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	48.6000926775296	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTTTATGCTCTGTGCTGG	9147	False	NA	31	True	AATAAA	-20	NA	41352363	41363028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_41352537_41354005_41354311_41354969_41355064_41355390_41355496_41355614_41355771_41356280_41356382_41357129_41357388_41357585_41357702_41357896_41358024_41358203_41358286_41358599_41358745_41359436_41359628_41359712_41359799_41360160_41360251_41360371_41360529_41360728_41360806_41360980_41361252_41361390_41361492_41361761_41361876_41362023_41362118_41362367_41362468_41362589_41362664_41362753
transcript_40115.known	chr4	-	3852	8	FSM	ENSMUSG00000043872.15	ENSMUST00000106102.9	3852	8	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_6	26.8206438918888	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATTAGAGGCCTAACT	NA	False	NA	NA	False	ACTAAA	-36	NA	126954945	126940886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_126943700_126944356_126944395_126944536_126944666_126945067_126945219_126948000_126948176_126952585_126952825_126953302_126953453_126954788
transcript_4012.nnic	chr10	+	940	6	NNC	ENSMUSG00000078451.6	novel	516	4	NA	NA	-631	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	2.1540659228538	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACATTTGATTTGAAGGCAA	NA	False	NA	NA	False	ATTAAA	-12	NA	41377014	41390282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_41377355_41377620_41377684_41377779_41377928_41378991_41379049_41383419_41383556_41390086
transcript_40123.known	chr4	+	574	3	FSM	ENSMUSG00000085334.8	ENSMUST00000130659.8	574	3	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_2	16	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTTTGTTCAAGTAGGA	NA	False	NA	18	True	AATAAA	-19	NA	126929242	126930806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_126929648_126930355_126930443_126930724
transcript_40124.nnic	chr4	+	1033	3	NNC	ENSMUSG00000070737.11	novel	1120	3	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	45	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTACTTCGTCCACT	NA	False	NA	7	True	TTTAAA	-4	NA	127019832	127023437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_127019894_127021611_127021793_127022646
transcript_40125.known	chr4	+	1120	3	FSM	ENSMUSG00000070737.11	ENSMUST00000094712.5	1120	3	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_2	3.5	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTACTTCGTCCACT	NA	False	NA	7	True	TTTAAA	-4	NA	127019838	127023437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_127019987_127021611_127021793_127022646
transcript_40126.nic	chr4	+	1980	2	ISM	ENSMUSG00000070737.11	ENSMUST00000094712.5	1120	3	-6	0	-6	0	intron_retention	FALSE	canonical	3	105	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTACTTCGTCCACT	NA	False	NA	7	True	TTTAAA	-4	NA	127019832	127023437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_127019987_127021611
transcript_40131.known	chr4	+	1022	2	FSM	ENSMUSG00000042380.9	ENSMUST00000142029.2	1022	2	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_1	0	402	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGGAGTCCTGCTCTCT	NA	False	NA	29	True	ATTAAA	-18	NA	127137576	127141602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_127137692_127140695
transcript_40133.known	chr4	-	1685	2	FSM	ENSMUSG00000050234.8	ENSMUST00000053753.8	1685	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGTGTGCACTGATGTT	NA	False	NA	0	True	AATAAA	-17	NA	127207832	127205213	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_127206779_127207712
transcript_4014.known	chr10	+	2922	6	FSM	ENSMUSG00000019818.16	ENSMUST00000019962.15	2922	6	0	0	0	0	multi-exon	FALSE	canonical	3	1648	junction_4	8.82269800004511	378	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCATATTTTGATTATGA	NA	False	NA	20	True	AATAAA	-25	NA	41395409	41407044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_41395697_41397913_41398004_41399168_41399241_41400102_41400142_41402822_41402880_41404667
transcript_40143.known	chr4	-	1623	2	FSM	ENSMUSG00000042367.13	ENSMUST00000106091.9	1623	2	0	0	0	0	multi-exon	FALSE	canonical	3	984	junction_1	0	733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127222954	127219027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_127220565_127222868
transcript_40144.known	chr4	-	1880	2	FSM	ENSMUSG00000042367.13	ENSMUST00000046532.4	1880	2	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_1	0	740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTTCTTCCCTCCATTC	NA	False	NA	-5	True	AATAAA	-17	NA	127224637	127219027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_127220565_127224294
transcript_40147.known	chr4	-	1445	2	FSM	ENSMUSG00000046623.9	ENSMUST00000060419.2	1445	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGTAGTCAGGCGGAGAA	4504	False	NA	-10	True	AATAAA	-17	NA	127247874	127244878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_127246275_127247825
transcript_40149.known	chr4	-	1721	2	FSM	ENSMUSG00000042357.3	ENSMUST00000046498.3	1721	2	0	0	0	0	multi-exon	FALSE	canonical	3	573	junction_1	0	458	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCAGAGGGGCCCTTCCTT	404	False	NA	NA	False	AATAAA	-16	NA	127251974	127248601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_127250167_127251818
transcript_40151.nnic	chr4	+	464	4	Antisense	novelGene_ENSMUSG00000079998.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	4	junction_3	1.4142135623731	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGAGGCTAGCGCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	127302497	127308265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr4_+_127302541_127302789_127302952_127303602_127303687_127308090
transcript_40154.nnic	chr4	+	576	3	Antisense	novelGene_ENSMUSG00000079998.3_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGATGAAGAAGAAGAAGA	NA	False	NA	NA	False	NA	NA	NA	127302426	127318919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr4_+_127302541_127311191_127311321_127318586
transcript_40167.known	chr4	+	749	7	FSM	ENSMUSG00000028792.15	ENSMUST00000152762.2	749	7	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	971.101207678971	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAAGACCTGGTCATGTTT	2998	False	NA	NA	False	NA	NA	NA	128887145	128902022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_128887230_128892926_128893053_128895288_128895353_128895943_128896055_128896166_128896262_128901505_128901579_128901826
transcript_40169.known	chr4	+	1781	7	FSM	ENSMUSG00000028792.15	ENSMUST00000102604.11	1781	7	0	0	0	0	multi-exon	FALSE	canonical	3	1917	junction_3	122.234746833023	1844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTTGTGGAGTTTTTT	2869	False	NA	29	True	AATAAA	-19	NA	128887016	128905322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826_128902023_128904355
transcript_40173.known	chr4	+	986	6	FSM	ENSMUSG00000028792.15	ENSMUST00000030583.13	986	6	0	0	0	0	multi-exon	FALSE	canonical	3	1917	junction_3	119.822535443046	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGCACTCATCTATGT	2869	False	NA	22	True	ATTAAA	-26	NA	128887016	128902194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_128887230_128892926_128893053_128895943_128896055_128896166_128896262_128901505_128901579_128901826
transcript_40178.nnic	chr4	-	1107	3	NNC	ENSMUSG00000085085.3	novel	1009	2	NA	NA	38	-1	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_2	2	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTCCCTTATGACTTACA	NA	False	NA	-19	True	AATAAA	-15	NA	128951738	128943890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_128944703_128944860_128944998_128951580
transcript_40179.known	chr4	-	1666	3	FSM	ENSMUSG00000028785.14	ENSMUST00000095807.10	1666	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGTGGCCAGGGGAGGGC	NA	False	NA	0	True	AATAAA	-22	NA	129012760	129005362	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129006319_129006467_129006574_129012156
transcript_40180.known	chr4	-	4059	9	FSM	ENSMUSG00000040928.16	ENSMUST00000072431.13	4059	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	67.6456761367643	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	1151	False	NA	-5	True	AATAAA	-15	NA	129083372	129041797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129075634_129075759_129075894_129076001_129076326_129077393_129077511_129083334
transcript_40181.known	chr4	-	4084	9	FSM	ENSMUSG00000040928.16	ENSMUST00000106059.8	4084	9	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	66.0793793478722	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	1003	False	NA	-5	True	AATAAA	-15	NA	129083520	129041797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129075634_129075759_129075894_129076124_129076326_129077393_129077511_129083334
transcript_40188.known	chr4	-	4426	7	FSM	ENSMUSG00000040928.16	ENSMUST00000106061.9	4426	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	60.2301142840246	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	1188	False	NA	-5	True	AATAAA	-15	NA	129083335	129041797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129077393_129077511_129083164
transcript_40189.nic	chr4	-	4357	7	NIC	ENSMUSG00000040928.16	novel	4059	9	NA	NA	-17	0	intron_retention	FALSE	canonical	3	119	junction_6	30.1482448355898	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATATGTACTGTGGCCGTC	1087	False	NA	-5	True	AATAAA	-15	NA	129083436	129041797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129077393_129077511_129083334
transcript_40190.nic	chr4	-	1536	7	NIC	ENSMUSG00000040928.16	novel	4059	9	NA	NA	-17	0	intron_retention	FALSE	canonical	3	119	junction_6	30.1482448355898	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTACTGTCTTGAATTTTT	1087	False	NA	NA	False	TTTAAA	-26	NA	129083436	129044618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_129044885_129049217_129049303_129072033_129072126_129073981_129074065_129075534_129076326_129077393_129077511_129083334
transcript_40197.known	chr4	+	2909	13	FSM	ENSMUSG00000028811.13	ENSMUST00000106054.4	2909	13	0	0	0	0	multi-exon	FALSE	canonical	3	1466	junction_9	124.991221914003	863	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAACACAGCTTTGTCA	713	False	NA	NA	False	AAAACA	-42	NA	129083552	129113400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_129083866_129090622_129090770_129090905_129091082_129094518_129094649_129099921_129100003_129101733_129101827_129103444_129103581_129104285_129104372_129107741_129107878_129108450_129108549_129109018_129109213_129110470_129110613_129112223
transcript_402.nic	chr1	-	1596	6	NIC	ENSMUSG00000025939.20	novel	2181	6	NA	NA	-27	-356	combination_of_known_junctions	FALSE	canonical	3	127	junction_3	123.769139933992	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAAAGAGTGTGGACATTTT	NA	False	NA	NA	False	AATACA	-27	NA	16689563	16640361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_16641507_16652150_16652227_16655499_16655577_16668174_16668278_16672485_16672578_16689460
transcript_4020.nic	chr10	-	2340	12	NIC	ENSMUSG00000019813.17	novel	2232	11	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_11	60.5360353033458	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	108	False	NA	4	True	AATAAA	-25	NA	41685885	41594836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568_41685660_41685783
transcript_40211.known	chr4	+	647	3	FSM	ENSMUSG00000028811.13	ENSMUST00000128287.2	647	3	0	0	0	0	multi-exon	FALSE	canonical	3	1802	junction_1	30	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAACAAAAATATACTGGCTC	855	False	NA	NA	False	ATTAAA	-32	NA	129083694	129091234	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_129083866_129090622_129090770_129090905
transcript_40216.nnic	chr4	-	1865	13	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-47	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	298.072173866219	104	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	9969	False	NA	-27	True	AATAAA	-16	NA	129229210	129203307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_129203670_129203843_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
transcript_40226.known	chr4	-	4407	12	FSM	ENSMUSG00000057236.11	ENSMUST00000102598.4	4407	12	0	0	0	0	multi-exon	TRUE	canonical	3	482	junction_1	226.647613038099	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATATTTTATGTTTGA	2492	False	NA	-8	True	AATAAA	-7	NA	129229163	129200892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129203951_129211440_129211552_129211654_129211713_129212236_129212314_129214261_129214340_129215646_129215774_129215871_129216033_129216145_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
transcript_4023.nnic	chr10	-	2397	11	NNC	ENSMUSG00000019813.17	novel	2255	12	NA	NA	-5623	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_10	58.0965575572254	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGGAAATATTCTGGG	5889	False	NA	4	True	AATAAA	-25	NA	41628257	41594836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41628007
transcript_40234.nnic	chr4	-	1122	6	NNC	ENSMUSG00000057236.11	novel	4407	12	NA	NA	-47	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	430.118402303366	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCATGCTGGTGGGTTTT	9969	False	NA	-27	True	AATAAA	-16	NA	129229210	129203307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_129203678_129216177_129216262_129216488_129216663_129222380_129222527_129228289_129228438_129229010
transcript_40239.nic	chr4	-	922	5	NIC	ENSMUSG00000057236.11	novel	722	4	NA	NA	-47	0	combination_of_known_junctions	FALSE	canonical	3	143	junction_1	413.387454454051	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	9969	False	NA	-29	True	AATAAA	-14	NA	129229210	129203309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_129203670_129216594_129216663_129222380_129222527_129228289_129228438_129229010
transcript_40240.known	chr4	-	722	4	FSM	ENSMUSG00000057236.11	ENSMUST00000140291.2	722	4	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	460.816666365269	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGCCCCATGCTGGTGGGTT	3218	False	NA	-29	True	AATAAA	-14	NA	129228437	129203309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129203670_129216594_129216663_129222380_129222527_129228289
transcript_40242.known	chr4	+	3833	7	FSM	ENSMUSG00000057572.16	ENSMUST00000141235.8	3833	7	0	0	0	0	multi-exon	FALSE	canonical	3	561	junction_4	57.3866031598162	541	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCACTTCGTAAAAAATACAG	NA	False	NA	NA	False	ATTAAA	-19	NA	129229487	129243664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_129229933_129234520_129234546_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
transcript_40247.known	chr4	+	527	6	FSM	ENSMUSG00000057572.16	ENSMUST00000119480.2	527	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	264.862530381328	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCGTTTGAGAGGATGTGAT	NA	False	NA	-81	True	TTTAAA	-45	NA	129229804	129240728	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_129229933_129234520_129234546_129235269_129235392_129235533_129235617_129238004_129238042_129240596
transcript_40248.known	chr4	+	618	6	FSM	ENSMUSG00000057572.16	ENSMUST00000106047.4	618	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	246.415421595321	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTGTGTAGCAGTGGTCT	NA	False	NA	17	True	TTTAAA	-24	NA	129229839	129240826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_129229933_129235269_129235392_129235533_129235617_129236913_129236967_129238004_129238042_129240596
transcript_40250.known	chr4	-	2321	5	FSM	ENSMUSG00000028807.3	ENSMUST00000030610.3	2321	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_4	9.35414346693485	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTTTCGTGACACTTTTA	NA	False	NA	0	True	AATAAA	-24	NA	129271909	129247420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129248298_129251497_129251668_129253690_129254494_129263021_129263116_129271532
transcript_40251.known	chr4	+	2823	11	FSM	ENSMUSG00000040859.15	ENSMUST00000048162.10	2823	11	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_3	13.6088206689632	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGAAGTGTCCGGGGATGT	NA	False	NA	64	True	ATTAAA	-15	NA	129355373	129382291	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_129355499_129355734_129355796_129359022_129359140_129360615_129360784_129362786_129362842_129365719_129365836_129366216_129366286_129366490_129366570_129367567_129368039_129378829_129378934_129380833
transcript_40256.known	chr4	+	558	3	FSM	ENSMUSG00000078554.3	ENSMUST00000106043.3	558	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGGGCTGGCCGTGTATG	2238	False	NA	NA	False	AATAAA	-25	NA	129384982	129385749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_129385129_129385207_129385355_129385484
transcript_40257.known	chr4	+	1605	2	FSM	ENSMUSG00000047945.7	ENSMUST00000062356.7	1605	2	0	0	0	0	multi-exon	FALSE	canonical	3	8029	junction_1	0	162	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTGGTCTTCTGGGGT	NA	False	NA	24	True	AATAAA	-24	NA	129407373	129409778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_129407710_129408509
transcript_40262.known	chr4	-	2038	14	FSM	ENSMUSG00000028800.16	ENSMUST00000102597.5	2038	14	0	0	0	0	multi-exon	FALSE	canonical	3	1463	junction_10	202.513203601978	1425	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCTGGTTGGTTTAAGTT	8808	False	NA	-5	True	AATAAA	-22	NA	129436506	129409896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129410430_129410692_129410742_129411148_129411302_129411585_129411717_129411805_129411915_129412623_129412765_129412844_129412954_129415210_129415304_129416155_129416298_129416755_129416895_129418038_129418114_129422719_129422838_129428406_129428520_129436373
transcript_40273.known	chr4	-	2074	13	FSM	ENSMUSG00000000409.15	ENSMUST00000167288.8	2074	13	0	0	0	0	multi-exon	TRUE	canonical	3	4	junction_12	60.4484973620795	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTACTGCATACTTTATTT	NA	False	NA	5	True	NA	NA	NA	129452165	129442136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080_129450231_129450436_129450541_129450826_129450926_129451157_129451249_129451418_129451501_129451873_129451984_129452080
transcript_40274.known	chr4	-	2185	12	FSM	ENSMUSG00000000409.15	ENSMUST00000067240.11	2185	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	59.1335510476424	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTCTACTGCATACTT	NA	False	NA	0	True	NA	NA	NA	129452184	129442141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080_129450231_129450436_129450541_129450826_129450926_129451157_129451249_129451418_129451501_129451873
transcript_40276.nic	chr4	-	1633	7	ISM	ENSMUSG00000000409.15	ENSMUST00000167288.8	2074	13	1800	5	-113	0	3prime_fragment	FALSE	canonical	3	108	junction_2	13.2214052035158	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTCTACTGCATACTT	NA	False	NA	0	True	NA	NA	NA	129450365	129442141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_129442794_129445297_129445430_129445509_129445664_129445740_129445818_129449331_129449512_129449645_129449799_129450080
transcript_40281.known	chr4	-	1123	11	FSM	ENSMUSG00000028798.17	ENSMUST00000102593.11	1123	11	0	0	0	0	multi-exon	FALSE	canonical	3	822	junction_10	179.667915889287	1831	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTGCAGCCTGTCTGT	6377	False	NA	0	True	AATAAA	-32	NA	129494441	129485752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129485928_129486059_129486153_129486789_129486864_129487134_129487225_129487318_129487430_129488851_129488980_129489056_129489207_129490666_129490733_129492747_129492836_129494201_129494295_129494386
transcript_40285.known	chr4	-	1023	9	FSM	ENSMUSG00000078552.11	ENSMUST00000106037.3	1023	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.5612494995996	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCTGGGAGCTCCAGATAC	NA	False	NA	NA	False	NA	NA	NA	129508047	129502540	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129502637_129502874_129502979_129503407_129503535_129504008_129504049_129504123_129504271_129504701_129504834_129505055_129505133_129505561_129505614_129507799
transcript_40294.known	chr4	+	875	6	FSM	ENSMUSG00000028797.21	ENSMUST00000151969.8	875	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	309.843831631356	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGGGCGTGGTGGCGCACG	3183	False	NA	NA	False	NA	NA	NA	129494479	129501530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_129494525_129494775_129495037_129495199_129495327_129495987_129496055_129500879_129500973_129501248
transcript_40295.nic	chr4	+	1127	6	NIC	ENSMUSG00000028797.21	novel	875	6	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	299.030834530488	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACCCAA	3163	False	NA	NA	False	NA	NA	NA	129494459	129501670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_129494525_129494775_129495037_129495199_129495419_129495987_129496055_129500879_129500973_129501248
transcript_40298.known	chr4	+	680	6	FSM	ENSMUSG00000028797.21	ENSMUST00000172774.8	680	6	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_3	325.590786110418	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCCGACCGTCAGCTCTGC	3164	False	NA	NA	False	NA	NA	NA	129494460	129501351	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_129494525_129494775_129495037_129495662_129495755_129495987_129496055_129500879_129500973_129501248
transcript_40306.nic	chr4	-	1302	6	NIC	ENSMUSG00000040795.13	novel	2639	5	NA	NA	-29	140	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	35.7960891718635	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTCACGCCTTTAATCCC	NA	False	NA	-20	True	NA	NA	NA	129512921	129509411	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_129509881_129510753_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
transcript_40309.known	chr4	-	744	6	FSM	ENSMUSG00000028795.16	ENSMUST00000151838.8	744	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	33.5535393066067	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTACTCGGTGCTCTCCTT	NA	False	NA	-4	True	ATTAAA	-14	NA	129517630	129513068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129513240_129514249_129514273_129514475_129514647_129514776_129514944_129516392_129516581_129517606
transcript_4031.known	chr10	-	2177	11	FSM	ENSMUSG00000019813.17	ENSMUST00000019951.16	2177	11	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_4	38.3583107031579	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAGCCTGTGGAAATATT	390	False	NA	-1	True	AATAAA	-20	NA	41685603	41594841	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_41595904_41597552_41597698_41598879_41599002_41599856_41599935_41604623_41604711_41605326_41605405_41606994_41607112_41616835_41616958_41619037_41619218_41621766_41621918_41685568
transcript_40310.known	chr4	-	879	6	FSM	ENSMUSG00000028795.16	ENSMUST00000030586.15	879	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	6.82934843158555	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACTCGGTGCTCTCCTTGT	NA	False	NA	-2	True	ATTAAA	-16	NA	129517740	129513066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129513240_129514249_129514273_129514475_129514670_129514776_129514944_129516392_129516581_129517606
transcript_40312.known	chr4	+	449	5	FSM	ENSMUSG00000028797.21	ENSMUST00000181579.8	449	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	266.321703959704	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTGGGCCAACCCCGACC	3177	False	NA	NA	False	NA	NA	NA	129494473	129501340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_129494525_129494775_129494928_129495987_129496055_129500879_129500973_129501254
transcript_40314.known	chr4	+	453	5	FSM	ENSMUSG00000028797.21	ENSMUST00000173758.8	453	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	300.683388300717	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGTGGATGCTGGGCCCA	3187	False	NA	NA	False	NA	NA	NA	129494483	129501375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_129494525_129494775_129494928_129496014_129496055_129500879_129500973_129501248
transcript_40317.known	chr4	+	1519	5	FSM	ENSMUSG00000028797.21	ENSMUST00000152126.8	1519	5	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_2	194.785779768442	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAGCTTAGCAAATGT	3196	False	NA	9	True	AATAAA	-9	NA	129494492	129502314	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129501248
transcript_40319.known	chr4	+	1575	5	FSM	ENSMUSG00000028797.21	ENSMUST00000137090.8	1575	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	269.261025772391	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGCTGGTGAGATGGCTC	3165	False	NA	NA	False	AATAAA	-12	NA	129494461	129513367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_129494525_129494775_129495037_129495987_129496055_129500879_129500973_129512276
transcript_4032.known	chr10	-	711	3	FSM	ENSMUSG00000019813.17	ENSMUST00000189222.2	711	3	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_2	46.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAACTGTGAGGCCTTGGTC	385	False	NA	NA	False	NA	NA	NA	41685608	41618697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_41619218_41621766_41621918_41685568
transcript_40321.known	chr4	-	2639	5	FSM	ENSMUSG00000040795.13	ENSMUST00000046675.12	2639	5	0	0	0	0	multi-exon	TRUE	canonical	3	109	junction_1	14.396180048888	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATATGTACAAATATATGTA	NA	False	NA	NA	False	NA	NA	NA	129512892	129508918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129510974_129511150_129511252_129511456_129511710_129512284_129512429_129512806
transcript_40325.known	chr4	+	652	4	FSM	ENSMUSG00000028797.21	ENSMUST00000174819.8	652	4	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_2	255.064697674923	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGAGTCCAGGACAGCCA	3191	False	NA	NA	False	NA	NA	NA	129494487	129501618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_129494525_129494775_129494928_129500879_129500973_129501248
transcript_40327.known	chr4	+	756	4	FSM	ENSMUSG00000028797.21	ENSMUST00000173937.8	756	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	291.296336323606	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTCTACAGAGTGAGTCCA	3187	False	NA	NA	False	NA	NA	NA	129494483	129501609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_129494525_129494775_129495037_129500879_129500973_129501248
transcript_40329.known	chr4	-	491	3	FSM	ENSMUSG00000040795.13	ENSMUST00000121442.2	491	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	58	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGACTTGTTTTTTTCT	NA	False	NA	NA	False	NA	NA	NA	129512889	129511891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129512156_129512284_129512429_129512806
transcript_4033.known	chr10	+	3809	10	FSM	ENSMUSG00000038332.14	ENSMUST00000099931.11	3809	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	18.7662686623146	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCTTTATTAATTTCAT	-8	True	NA	8	True	AATAAA	-15	NA	41685930	41784420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_41687297_41770037_41770104_41770815_41771017_41772018_41772202_41774178_41774422_41778524_41778673_41779687_41779801_41781169_41781361_41782331_41782477_41783267
transcript_40330.known	chr4	-	460	2	FSM	ENSMUSG00000040795.13	ENSMUST00000146378.2	460	2	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTGCTGAGCCATCTCTC	NA	False	NA	NA	False	NA	NA	NA	129512873	129512035	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129512429_129512806
transcript_40331.known	chr4	+	1124	4	FSM	ENSMUSG00000028797.21	ENSMUST00000174350.8	1124	4	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	212.397426224205	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACCCAA	3198	False	NA	NA	False	NA	NA	NA	129494494	129501670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_129495037_129495987_129496055_129500879_129500973_129501248
transcript_40332.known	chr4	-	615	5	FSM	ENSMUSG00000028795.16	ENSMUST00000124630.8	615	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	36.8874978820738	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTACTCGGTGCTCTCCTT	NA	False	NA	-4	True	ATTAAA	-14	NA	129515214	129513068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129513240_129514249_129514273_129514475_129514670_129514776_129514944_129515154
transcript_40333.known	chr4	-	4569	11	FSM	ENSMUSG00000053841.16	ENSMUST00000046425.16	4569	11	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_10	28.2349074728429	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTCAGCCAATCGAATTAT	7860	False	NA	-5	True	ATTAAA	-22	NA	129534858	129519870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129522992_129523343_129523440_129524104_129524198_129525072_129525148_129525383_129525504_129525882_129526078_129528167_129528339_129530888_129530981_129533021_129533361_129534048_129534221_129534763
transcript_40336.known	chr4	-	5710	14	FSM	ENSMUSG00000003731.14	ENSMUST00000102590.11	5710	14	0	0	0	0	multi-exon	TRUE	canonical	3	106	junction_4	15.2943505832485	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTCTTCTTTGGTTTGGAG	8834	False	NA	3	True	AATAAA	-22	NA	129566560	129537772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129541973_129542990_129543170_129544476_129544605_129545380_129545507_129547230_129547310_129547634_129547799_129548080_129548181_129548657_129548747_129549222_129549355_129550100_129550196_129551181_129551282_129551560_129551654_129555098_129555233_129566469
transcript_40339.known	chr4	-	1851	10	FSM	ENSMUSG00000053730.16	ENSMUST00000125445.8	1851	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_7	9.25896295822207	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTGTGTCCTGTGATT	10001	False	NA	NA	False	AAAAAG	-21	NA	129590589	129570147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586428_129586512_129586858_129587079_129587678_129587806_129590507
transcript_4034.known	chr10	+	2600	10	FSM	ENSMUSG00000038332.14	ENSMUST00000041438.7	2600	10	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	20.085619202938	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGCTTTATTAATTTCAT	NA	False	NA	8	True	AATAAA	-15	NA	41763434	41784420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_41763592_41770037_41770104_41770815_41771017_41772018_41772202_41774178_41774422_41778524_41778673_41779687_41779801_41781169_41781361_41782331_41782477_41783267
transcript_40341.known	chr4	-	1810	9	FSM	ENSMUSG00000053730.16	ENSMUST00000102588.10	1810	9	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_6	5.99869777535091	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTGTGTCCTGTGATT	9992	False	NA	NA	False	AAAAAG	-21	NA	129590631	129570147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586858_129587079_129587678_129587806_129590507
transcript_40342.nnic	chr4	-	1780	9	NNC	ENSMUSG00000053730.16	novel	1810	9	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	10.4335696192626	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGCCTGTGTCCTGTGATT	9991	False	NA	NA	False	AAAAAG	-21	NA	129590632	129570147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_129570602_129572364_129572486_129578104_129578293_129580563_129580901_129585760_129585916_129586225_129586310_129586858_129587079_129587678_129587806_129590538
transcript_4035.known	chr10	-	1135	3	FSM	ENSMUSG00000071324.12	ENSMUST00000162405.8	1135	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGAGAATCCTGAGTCTCATC	NA	False	NA	NA	False	AATAAA	-33	NA	41894376	41875803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_41876495_41887763_41888020_41894188
transcript_40351.known	chr4	+	1551	5	FSM	ENSMUSG00000028779.17	ENSMUST00000030563.6	1551	5	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	25.1047804212664	276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGACTTCTTGACTGTGTGT	9278	False	NA	25	True	AATAAA	-32	NA	130001348	130021927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_130001444_130014960_130015235_130018855_130019012_130019446_130019591_130021045
transcript_40352.known	chr4	-	1952	12	FSM	ENSMUSG00000028776.15	ENSMUST00000105999.9	1952	12	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_11	29.3189922368611	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTGTCTGGGAGTCTTCA	NA	False	NA	NA	False	AATAAA	-19	NA	130068595	130059394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_130059999_130060095_130060142_130060694_130060819_130061048_130061095_130061197_130061388_130061490_130061642_130061722_130061847_130062811_130062927_130063103_130063197_130066724_130066789_130067685_130068001_130068515
transcript_40353.known	chr4	-	1878	10	FSM	ENSMUSG00000023232.18	ENSMUST00000105996.8	1878	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	3.01027048536535	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTCCCATGTCTTGTG	7796	False	NA	-1	True	AATAAA	-17	NA	130169379	130147287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_130147859_130149148_130149359_130152020_130152157_130152493_130152585_130154435_130154606_130156820_130156959_130157374_130157455_130158053_130158245_130158861_130159024_130169250
transcript_40355.known	chr4	-	2113	8	FSM	ENSMUSG00000028772.20	ENSMUST00000134159.3	2113	8	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_6	38.5094740529747	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGGTCCAGGCTGATGC	NA	False	NA	NA	False	AATAAA	-17	NA	130253736	130209175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_130210602_130220985_130221132_130223366_130223468_130230870_130230963_130232276_130232378_130243057_130243116_130247928_130248050_130253668
transcript_4036.nnic	chr10	-	2451	13	NNC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	3105	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_12	15.7524248574272	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	1	True	AATAAA	-18	NA	42351171	42188580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42350930
transcript_4037.known	chr10	-	2513	13	FSM	ENSMUSG00000038302.15	ENSMUST00000041024.15	2513	13	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_11	7.72801541291309	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	1	True	AATAAA	-18	NA	42354561	42188580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42314349_42314402_42330302_42330527_42354258
transcript_40376.known	chr4	+	823	4	FSM	ENSMUSG00000028773.9	ENSMUST00000070532.8	823	4	0	0	0	0	multi-exon	FALSE	canonical	3	4337	junction_3	149.244765402342	3596	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTCTGTCTTTGGTCCTC	NA	False	NA	31	True	AATAAA	-20	NA	130202387	130209256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_130202644_130206083_130206257_130207746_130207849_130208964
transcript_40384.known	chr4	+	1584	10	FSM	ENSMUSG00000074088.7	ENSMUST00000105994.4	1584	10	0	0	0	0	multi-exon	FALSE	canonical	3	1067	junction_7	51.5407066738946	1113	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAAACCTTGTGACTTGG	NA	False	NA	22	True	ATTAAA	-23	NA	130253924	130283819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_130254143_130256420_130256551_130258867_130258962_130261981_130262148_130271838_130271962_130277186_130277308_130278274_130278358_130279746_130279809_130282367_130282472_130283336
transcript_40390.known	chr4	+	3991	22	FSM	ENSMUSG00000028580.16	ENSMUST00000097862.3	3991	22	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_17	105.62885866236	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GTTAAAAAAAAAGACAAAAA	NA	False	NA	NA	False	NA	NA	NA	130390716	130507565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
transcript_40395.known	chr4	+	4614	18	FSM	ENSMUSG00000028580.16	ENSMUST00000105991.9	4614	18	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	156.174288231124	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTGTACTGCTCTCACTT	NA	False	NA	22	True	AATACA	-16	NA	130390669	130508873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130468773_130468868_130471003_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493361_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
transcript_40396.known	chr4	+	5389	22	FSM	ENSMUSG00000028580.16	ENSMUST00000030315.13	5389	22	0	0	0	0	multi-exon	TRUE	canonical	3	218	junction_8	122.217214904643	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTACTGCTCTCACTTCT	NA	False	NA	24	True	AATACA	-18	NA	130390631	130508875	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_130390779_130396235_130396610_130428352_130428422_130445464_130445574_130446483_130446663_130455308_130455476_130457588_130457860_130468773_130468868_130471000_130471106_130474288_130474441_130476722_130476862_130478736_130478881_130479886_130480184_130481252_130481490_130490064_130490333_130491375_130491506_130493231_130493367_130496126_130496265_130499182_130499309_130499939_130500062_130501722_130501916_130507082
transcript_404.known	chr1	-	2181	6	FSM	ENSMUSG00000025939.20	ENSMUST00000117146.9	2181	6	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_5	28.7888867447145	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGTTTCTATGACAATG	NA	False	NA	NA	False	TATAAA	-21	NA	16689713	16640005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_16641507_16652150_16652227_16655499_16655656_16668174_16668278_16672485_16672578_16689460
transcript_4040.nnic	chr10	-	2245	12	NIC	ENSMUSG00000038302.15	novel	2513	13	NA	NA	66	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_10	11.696577164084	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCTTGTCTGATTCATT	NA	False	NA	1	True	AATAAA	-18	NA	42354345	42188580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_42189613_42192345_42192460_42194587_42194729_42215820_42215922_42216177_42216249_42236160_42236244_42276336_42276396_42291544_42291645_42301173_42301305_42302481_42302584_42330302_42330527_42354258
transcript_40404.known	chr4	+	2600	8	FSM	ENSMUSG00000028581.18	ENSMUST00000151698.8	2600	8	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_4	26.2071808199702	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCATGTGGTTCTTG	NA	False	NA	22	True	AATAAA	-18	NA	130640435	130663452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_130640746_130653415_130653510_130654081_130654159_130655947_130656074_130656730_130656854_130658081_130658178_130659327_130659421_130661771
transcript_40406.known	chr4	+	2001	8	FSM	ENSMUSG00000040533.8	ENSMUST00000102576.4	2001	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	5.36808406515884	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGGAATTAGTGGTGGTGA	1491	False	NA	NA	False	AATAAA	-32	NA	130671695	130682786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_130671841_130673139_130673487_130677245_130677469_130678599_130678726_130679149_130679567_130680143_130680297_130681646_130681728_130682277
transcript_40408.nic	chr4	+	1413	11	NIC	ENSMUSG00000028910.13	novel	1337	10	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_5	55.4697214703662	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCATGCGTGTGGAGGAA	NA	False	NA	33	True	AATAAA	-33	NA	131570760	131595097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_131570990_131581026_131581125_131581895_131582028_131585067_131585212_131588071_131588175_131588487_131588544_131589086_131589190_131590228_131590303_131592367_131592429_131592566_131592640_131594757
transcript_40410.known	chr4	+	1337	10	FSM	ENSMUSG00000028910.13	ENSMUST00000030742.11	1337	10	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_6	17.6243378301319	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTCATGCGTGTGGAGGAA	NA	False	NA	33	True	AATAAA	-33	NA	131570780	131595097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_131570990_131581026_131581125_131581895_131582028_131585067_131585212_131588071_131588175_131589086_131589190_131590228_131590303_131592367_131592429_131592566_131592640_131594757
transcript_40416.known	chr4	-	4129	5	FSM	ENSMUSG00000040025.18	ENSMUST00000152796.8	4129	5	0	0	0	0	multi-exon	FALSE	canonical	3	863	junction_4	54.1589097009901	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTGGCCTGCATGTATA	NA	False	NA	NA	False	ATTAAA	-19	NA	131939614	131912222	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_131914259_131931442_131933027_131938062_131938143_131938742_131938768_131939210
transcript_40421.known	chr4	-	955	4	FSM	ENSMUSG00000040025.18	ENSMUST00000085181.5	955	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	419.072255769283	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTGTTCTTGTGTATTA	NA	False	NA	NA	False	AGTAAA	-21	NA	131939402	131913600	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_131914259_131938062_131938143_131938742_131938768_131939210
transcript_40422.known	chr4	-	502	1	FSM	ENSMUSG00000083757.3	ENSMUST00000229086.2	502	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10932	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAATCCTTGATCTACACT	9912	False	NA	NA	False	AATAAA	-40	NA	131947800	131947298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_131947300_131947800
transcript_40424.known	chr4	-	4632	11	FSM	ENSMUSG00000028901.14	ENSMUST00000105965.8	4632	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_10	24.0074988284911	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAACGCCAACTGATTGCG	1993	False	NA	NA	False	AATAAA	-30	NA	131988832	131950256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979144_131979741_131979805_131988801
transcript_40426.known	chr4	-	1925	10	FSM	ENSMUSG00000028901.14	ENSMUST00000105964.2	1925	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	18.219511993573	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAACAAA	1912	False	NA	-58	True	NA	NA	NA	131988913	131952981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131973296_131973380_131978985_131979144_131988801
transcript_40429.nnic	chr4	-	1807	9	NIC	ENSMUSG00000028901.14	novel	1925	10	NA	NA	35	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_7	25.6795151823394	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAACAAAAACAAA	1947	False	NA	-58	True	NA	NA	NA	131988878	131952981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_131953774_131955182_131955306_131958296_131958435_131959322_131959455_131962059_131962218_131964421_131964526_131969635_131969761_131978985_131979144_131988801
transcript_40430.nic	chr4	-	1056	2	ISM	ENSMUSG00000028901.14	ENSMUST00000105964.2	1925	10	35	25183	35	910	5prime_fragment	FALSE	canonical	3	10	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGGACTTAGGATGCATTT	1947	False	NA	NA	False	AAAAAG	-1	NA	131988878	131978164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_131979144_131988801
transcript_40435.known	chr4	+	3787	6	FSM	ENSMUSG00000028899.12	ENSMUST00000030731.11	3787	6	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_3	32.7987804651331	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGACTTGGGTGGAATTG	NA	False	NA	NA	False	NA	NA	NA	132001685	132023077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_132001799_132010104_132010357_132012354_132012433_132016625_132016741_132019173_132019263_132019937
transcript_40439.known	chr4	-	761	2	FSM	ENSMUSG00000089687.3	ENSMUST00000040411.7	761	2	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GACAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132030696	132029507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132029994_132030421
transcript_40440.known	chr4	+	606	5	FSM	ENSMUSG00000086290.10	ENSMUST00000153474.9	606	5	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	27.427176303805	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035988	132038335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_132036219_132037148_132037215_132037461_132037527_132037761_132037816_132038144
transcript_40442.known	chr4	+	422	5	FSM	ENSMUSG00000086290.10	ENSMUST00000128000.9	422	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	86.7478385897885	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132036206	132038335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_132036253_132037148_132037215_132037461_132037527_132037761_132037816_132038144
transcript_40443.known	chr4	+	896	4	FSM	ENSMUSG00000086290.10	ENSMUST00000232260.2	896	4	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	29.9369708257569	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035933	132038335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_132036219_132037148_132037215_132037461_132037816_132038144
transcript_40445.known	chr4	+	1213	3	FSM	ENSMUSG00000086290.10	ENSMUST00000126380.4	1213	3	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	32	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035945	132038335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_132036219_132037148_132037215_132037461
transcript_40446.known	chr4	+	1416	2	FSM	ENSMUSG00000086290.10	ENSMUST00000137343.9	1416	2	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTCTTTTTTATTTATT	NA	False	NA	25	True	AATAAA	-14	NA	132035987	132038333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_132036219_132037148
transcript_40447.known	chr4	+	935	4	FSM	ENSMUSG00000086290.10	ENSMUST00000144705.9	935	4	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_1	29.9369708257569	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTTTTTTATTTATTTA	NA	False	NA	27	True	AATAAA	-16	NA	132035988	132038335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_132036219_132037148_132037215_132037461_132037527_132037761
transcript_40449.known	chr4	-	1017	10	FSM	ENSMUSG00000028898.16	ENSMUST00000147652.8	1017	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	205.952229868128	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGTGAAGGCAGAGGCCTAG	2465	False	NA	-102	True	NA	NA	NA	132056700	132039175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132052662_132052801_132053256_132053357_132055779_132055878_132056663
transcript_4045.known	chr10	+	1401	4	FSM	ENSMUSG00000019804.13	ENSMUST00000019939.12	1401	4	0	0	0	0	multi-exon	FALSE	canonical	3	2006	junction_3	141.176800108548	1782	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTGTGTGCTCTGGTTGC	NA	False	NA	12	True	AATAAA	-13	NA	42378026	42411366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_42378489_42401949_42402046_42409144_42409270_42410648
transcript_40452.known	chr4	-	1130	9	FSM	ENSMUSG00000028898.16	ENSMUST00000030730.14	1130	9	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_8	39.2324801663112	184	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2316	False	NA	0	True	AATAAA	-17	NA	132056849	132039073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132053256_132053357_132055779_132055878_132056663
transcript_40456.nic	chr4	-	1019	8	NIC	ENSMUSG00000028898.16	novel	1130	9	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_7	168.067042016705	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2329	False	NA	0	True	AATAAA	-17	NA	132056836	132039073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132053256_132053357_132056663
transcript_40457.nic	chr4	-	1062	8	NIC	ENSMUSG00000028898.16	novel	1130	9	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	2	19	junction_6	176.968693184266	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2284	False	NA	0	True	AATAAA	-17	NA	132056881	132039073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132055779_132055878_132056663
transcript_40460.nic	chr4	-	923	7	NIC	ENSMUSG00000028898.16	novel	1130	9	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_6	188.905399605199	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGGCTTCTTCAACTGTAT	2325	False	NA	0	True	AATAAA	-17	NA	132056840	132039073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_132039318_132041303_132041338_132041515_132041679_132046765_132046886_132048989_132049122_132052518_132052572_132056663
transcript_40469.known	chr4	-	2278	11	FSM	ENSMUSG00000028896.14	ENSMUST00000030726.13	2278	11	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_9	136.55039362814	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTTTGTTTTTATGCGT	5481	False	NA	-14	True	AATAAA	-17	NA	132073016	132059233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132066513_132066553_132067235_132067318_132072956
transcript_40471.known	chr4	-	2285	10	FSM	ENSMUSG00000028896.14	ENSMUST00000084250.11	2285	10	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_9	35.0019399815087	392	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTTATGCGTGTCC	5439	False	NA	-10	True	AATAAA	-21	NA	132073058	132059229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132060314_132061417_132061571_132061795_132061916_132062055_132062212_132062729_132062853_132063027_132063125_132065041_132065222_132065361_132065550_132067235_132067318_132072956
transcript_40483.nnic	chr4	-	276	4	NNC	ENSMUSG00000085241.8	novel	437	3	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	462.294518918646	321	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTGTGATTTAATGTG	NA	False	NA	-10	True	ATTAAA	-14	NA	132081017	132079244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_132079253_132079432_132079555_132079973_132080010_132080907
transcript_4049.known	chr10	+	1057	3	FSM	ENSMUSG00000019804.13	ENSMUST00000105499.2	1057	3	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_1	903	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGGTTGCACGGCCTCCAG	NA	False	NA	23	True	AATAAA	-24	NA	42378285	42411377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_42378489_42409144_42409270_42410648
transcript_40492.known	chr4	-	437	3	FSM	ENSMUSG00000085241.8	ENSMUST00000152943.8	437	3	0	0	0	0	multi-exon	FALSE	canonical	3	959	junction_1	21	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTGTGATTTAATGTGT	NA	False	NA	-9	True	ATTAAA	-15	NA	132080997	132079243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132079555_132079973_132080010_132080907
transcript_40494.known	chr4	-	426	3	FSM	ENSMUSG00000085241.8	ENSMUST00000151374.2	426	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	490.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTGTGATTTAATGTG	NA	False	NA	-10	True	ATTAAA	-14	NA	132080944	132079244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132079555_132079930_132080010_132080907
transcript_40496.nic	chr4	-	804	2	ISM	ENSMUSG00000028896.14	ENSMUST00000155129.2	507	6	-30	14111	-30	-12443	5prime_fragment	FALSE	canonical	3	1001	junction_1	0	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCTGTGATTTAATGTG	NA	False	NA	-10	True	ATTAAA	-14	NA	132080946	132079244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_132080010_132080907
transcript_40497.nic	chr4	-	488	2	ISM	ENSMUSG00000085241.8	ENSMUST00000152943.8	437	3	-20	388	-20	-317	5prime_fragment	FALSE	canonical	3	1001	junction_1	0	409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAATTCCTAAGGCTTTT	NA	False	NA	NA	False	NA	NA	NA	132081017	132079631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_132080010_132080907
transcript_40499.known	chr4	-	4614	14	FSM	ENSMUSG00000066043.14	ENSMUST00000102568.10	4614	14	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_11	24.1391430016078	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAATTTGTGTTACTTTTT	NA	False	NA	NA	False	ATTAAA	-23	NA	132149800	132083233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132085596_132087785_132087863_132088888_132089027_132091041_132091104_132092885_132092942_132095212_132095367_132097044_132097227_132097836_132098432_132104490_132104866_132105715_132105875_132110592_132110674_132114202_132114377_132140380_132140435_132149655
transcript_4050.known	chr10	+	3006	6	FSM	ENSMUSG00000038280.13	ENSMUST00000040718.6	3006	6	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_2	7.54718490564528	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAATGTTGTAATTGAAT	NA	False	NA	9	True	AATAAA	-18	NA	42554911	42578455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_42555394_42559155_42559271_42568906_42569005_42572245_42572414_42574103_42574270_42576478
transcript_40502.nnic	chr4	-	1688	4	NNC	ENSMUSG00000066042.5	novel	1675	3	NA	NA	-50	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	122.055542912051	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTGATTCTGATTCTTAC	997	False	NA	-12	True	AATAAA	-16	NA	132191282	132186038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_132186356_132186395_132187425_132190175_132190320_132191084
transcript_40503.known	chr4	-	1675	3	FSM	ENSMUSG00000066042.5	ENSMUST00000102567.4	1675	3	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_2	8.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTTGTGATTCTGATTCT	1047	False	NA	-15	True	AATAAA	-13	NA	132191232	132186041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132187425_132190175_132190320_132191084
transcript_40504.known	chr4	-	3475	10	FSM	ENSMUSG00000028893.9	ENSMUST00000030724.9	3475	10	0	0	0	0	multi-exon	TRUE	canonical	3	666	junction_4	59.9637750728526	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTGCTAATGGGATGTT	NA	False	NA	-31	True	AATAAA	-22	NA	132237812	132219342	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132221114_132221774_132221920_132224195_132224387_132224682_132224802_132225263_132225415_132226247_132226461_132226555_132226739_132227076_132227275_132229873_132229940_132237374
transcript_40505.known	chr4	-	539	3	FSM	ENSMUSG00000054428.13	ENSMUST00000067496.7	539	3	0	0	0	0	multi-exon	FALSE	canonical	3	7869	junction_2	284	2271	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATGCCTTCTACTGTCT	9241	False	NA	-20	True	AATAAA	-19	NA	132260970	132257865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132258135_132260606_132260699_132260792
transcript_40506.known	chr4	-	462	2	FSM	ENSMUSG00000054428.13	ENSMUST00000152993.8	462	2	0	0	0	0	multi-exon	FALSE	canonical	3	8437	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGATGCCTTCTACTGTCT	9412	False	NA	-20	True	AATAAA	-19	NA	132260799	132257865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132258135_132260606
transcript_40507.known	chr4	-	1014	2	FSM	ENSMUSG00000054428.13	ENSMUST00000145795.2	1014	2	0	0	0	0	multi-exon	FALSE	canonical	3	7869	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAACAAAACAAAAAA	9305	False	NA	NA	False	NA	NA	NA	132260906	132259798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132260699_132260792
transcript_4051.known	chr10	+	6032	21	FSM	ENSMUSG00000019802.14	ENSMUST00000019937.5	6032	21	0	0	0	0	multi-exon	TRUE	canonical	3	208	junction_15	23.0789947788026	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTCCCTGATTTCGGTG	NA	False	NA	NA	False	NA	NA	NA	42637491	42708510	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_42637885_42659437_42659538_42665295_42665411_42667174_42667288_42670770_42670833_42672201_42672261_42673678_42673730_42674742_42674852_42677628_42677724_42677817_42677951_42679885_42679979_42681071_42681227_42682519_42682668_42686838_42686922_42688431_42688492_42688660_42688835_42691050_42691210_42692363_42692466_42699876_42699976_42703872_42703978_42704886
transcript_40510.known	chr4	+	746	8	FSM	ENSMUSG00000054405.15	ENSMUST00000105939.10	746	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1077.24724768878	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGATTGCTTTTTAGTCTATT	2362	False	NA	-27	True	NA	NA	NA	132262891	132280531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_132262975_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
transcript_40512.known	chr4	+	1401	9	FSM	ENSMUSG00000054405.15	ENSMUST00000094657.10	1401	9	0	0	0	0	multi-exon	TRUE	canonical	3	2684	junction_8	233.065676097962	2820	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATGGTCTCCTCCTCGGGT	2331	False	NA	19	True	AATAAA	-19	NA	132262860	132281053	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_132262975_132265497_132265600_132269092_132269150_132271366_132271434_132271967_132272063_132273947_132274020_132277687_132277780_132278845_132278922_132280327
transcript_40515.known	chr4	+	5160	17	FSM	ENSMUSG00000028886.16	ENSMUST00000081726.13	5160	17	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_15	5.48542101848163	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTTTTCTCCTTTGTCTTT	NA	False	NA	21	True	AATAAA	-17	NA	132366356	132452076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_132366467_132384003_132384100_132389205_132389250_132394465_132394546_132397499_132397567_132400206_132400344_132417015_132417102_132420272_132420457_132422057_132422195_132426340_132426425_132428331_132428422_132431662_132431722_132434273_132434435_132437255_132437371_132439152_132439275_132446522_132446624_132448589
transcript_40517.known	chr4	-	4245	3	FSM	ENSMUSG00000037752.5	ENSMUST00000045550.5	4245	3	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	6.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATTGTTTATTTTCCAGGA	4044	False	NA	NA	False	AATAAA	-20	NA	132459857	132452207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132455882_132458186_132458384_132459483
transcript_40518.known	chr4	-	376	3	FSM	ENSMUSG00000037752.5	ENSMUST00000150104.2	376	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	21.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTACCTGTCTTCCCTCCAA	4062	False	NA	NA	False	NA	NA	NA	132459839	132455816	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132455882_132458186_132458384_132459725
transcript_40519.known	chr4	-	2006	8	FSM	ENSMUSG00000028885.9	ENSMUST00000030709.9	2006	8	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_5	8.56666534317997	55	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACCGTGAGGGATCACAGC	NA	False	NA	-1	True	AATAAA	-31	NA	132484563	132460276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132461071_132465329_132465464_132465547_132465729_132466939_132467113_132468698_132468843_132472398_132472497_132473788_132474003_132484295
transcript_40525.known	chr4	+	1813	9	FSM	ENSMUSG00000028884.15	ENSMUST00000102561.11	1813	9	0	0	0	0	multi-exon	FALSE	canonical	3	1317	junction_7	93.1791788706039	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTCGCCCCTGGCCGTGCT	NA	False	NA	7	True	AGTAAA	-24	NA	132495645	132506063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137_132501213_132502327_132502445_132503558_132503667_132503963_132504059_132505100
transcript_40526.known	chr4	+	823	5	FSM	ENSMUSG00000028884.15	ENSMUST00000130090.8	823	5	0	0	0	0	multi-exon	FALSE	canonical	3	1348	junction_4	96.0676844729798	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAAAATAATAAA	NA	False	NA	NA	False	NA	NA	NA	132495686	132501546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_132495778_132495990_132496098_132497856_132497959_132499151_132499266_132501137
transcript_40528.nnic	chr4	-	2121	8	NNC	ENSMUSG00000028882.14	novel	2037	7	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_7	76.5037013910478	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGTATGGTCTTGAGTCT	NA	False	NA	-6	True	ATTAAA	-16	NA	132570448	132554239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_132555518_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570119_132570236_132570367
transcript_4053.known	chr10	+	2127	8	FSM	ENSMUSG00000038240.14	ENSMUST00000095725.11	2127	8	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	6.25316246521123	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAAAGTGTCTGCCTTTC	NA	False	NA	NA	False	ATTAAA	-28	NA	43097481	43316598	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_43098057_43174794_43174930_43221523_43221723_43248130_43248206_43269866_43270041_43271556_43271689_43289510_43289544_43315794
transcript_40530.known	chr4	-	1090	7	FSM	ENSMUSG00000028882.14	ENSMUST00000105919.2	1090	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	56.674509261219	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGGGTGGAGGGATGACAA	NA	False	NA	NA	False	NA	NA	NA	132570434	132555137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132555515_132556683_132556749_132557935_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570367
transcript_40532.known	chr4	-	883	5	FSM	ENSMUSG00000028882.14	ENSMUST00000131725.8	883	5	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_4	11.2998893799895	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTCTGTGAAAGATCTCCA	NA	False	NA	NA	False	NA	NA	NA	132570435	132557701	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132558081_132560207_132560429_132561947_132562102_132567954_132568016_132570367
transcript_40533.known	chr4	-	2934	9	FSM	ENSMUSG00000028879.5	ENSMUST00000030698.5	2934	9	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_5	25.18928343562	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTTGCACTTGATTGT	6093	False	NA	-4	True	AATAAA	-14	NA	132611820	132580811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132582870_132584610_132584694_132585729_132585803_132587854_132587961_132590136_132590181_132590469_132590608_132595478_132595579_132598898_132598969_132611558
transcript_40539.known	chr4	-	3053	9	FSM	ENSMUSG00000028878.12	ENSMUST00000030696.11	3053	9	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	24.0676130931175	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTTGTGATTCAGTTG	NA	False	NA	0	True	AATAAA	-19	NA	132649869	132626523	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132628620_132629313_132629416_132631208_132631345_132638002_132638090_132640979_132641138_132643429_132643583_132645032_132645088_132648037_132648103_132649668
transcript_4054.nic	chr10	+	2046	8	NIC	ENSMUSG00000038240.14	novel	2127	8	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	25.438200424093	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAAAGTGTCTGCCTTTC	NA	False	NA	NA	False	ATTAAA	-28	NA	43097515	43316598	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_43098010_43174794_43174930_43221523_43221723_43248130_43248206_43269866_43270041_43271556_43271689_43289510_43289544_43315794
transcript_40542.known	chr4	-	1863	8	FSM	ENSMUSG00000028878.12	ENSMUST00000097856.10	1863	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	31.9367998345712	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACCTGGATCTTTGGTTTT	NA	False	NA	NA	False	NA	NA	NA	132649804	132627561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132628620_132629313_132629416_132631208_132631345_132640979_132641138_132643429_132643583_132645032_132645088_132648037_132648103_132649668
transcript_40547.known	chr4	+	5642	9	FSM	ENSMUSG00000028868.14	ENSMUST00000084241.12	5642	9	0	0	0	0	multi-exon	FALSE	canonical	3	420	junction_8	37.0776212829248	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGGTGTCTGTGTGTGT	NA	False	NA	44	True	GATAAA	-22	NA	132857815	132927067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916507_132917439_132917571_132919415_132919572_132921706_132922219_132923027
transcript_40548.nic	chr4	+	1076	6	ISM	ENSMUSG00000028868.14	ENSMUST00000084241.12	5642	9	29	9326	-6	-119	5prime_fragment	FALSE	canonical	3	442	junction_3	37.2236483972219	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGAGACTGCGATTTAAAC	NA	False	NA	NA	False	ATTAAA	-15	NA	132857844	132917741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_132858040_132903751_132903924_132912279_132912415_132912909_132913064_132916388_132916507_132917439
transcript_40551.known	chr4	+	986	6	FSM	ENSMUSG00000028865.15	ENSMUST00000105910.2	986	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	9.2736184954957	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGACCTATGTCTTGGG	NA	False	NA	20	True	AATAAA	-22	NA	132948120	132951866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_132948379_132948753_132948916_132949015_132949088_132949479_132949525_132950913_132951059_132951562
transcript_40554.known	chr4	-	1951	15	FSM	ENSMUSG00000028860.14	ENSMUST00000030674.8	1951	15	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_9	2.42541812090709	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGCTTAACTGGGTATGA	NA	False	NA	4	True	AATAAA	-20	NA	132990424	132980400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132980620_132980765_132980972_132982843_132982944_132983044_132983124_132983352_132983512_132983798_132983896_132984175_132984343_132984446_132984561_132984727_132984823_132985044_132985133_132986171_132986218_132986292_132986369_132986598_132986748_132988163_132988393_132990297
transcript_40555.known	chr4	-	613	7	FSM	ENSMUSG00000028857.17	ENSMUST00000134781.8	613	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	347.535609686259	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCTCCTCGGCATTATC	NA	False	NA	NA	False	NA	NA	NA	133004929	132994197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132997980_132998126_132998273_132998359_133004841
transcript_40556.known	chr4	-	1484	6	FSM	ENSMUSG00000028857.17	ENSMUST00000105907.9	1484	6	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_4	52.562343935559	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTGTCTGTCATTTTCTT	NA	False	NA	-12	True	AATAAA	-14	NA	133005103	132993355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_132998273_132998359_133004841
transcript_40557.known	chr4	-	546	5	FSM	ENSMUSG00000028857.17	ENSMUST00000139030.2	546	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	309.884151740614	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATTATCCTGACCGTCAG	NA	False	NA	NA	False	NA	NA	NA	133005081	132994186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_132994233_132995506_132995638_132995719_132995817_132997088_132997121_133004841
transcript_4056.nnic	chr10	+	1833	6	NIC	ENSMUSG00000038240.14	novel	2127	8	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_4	28.8679753360017	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGAAAGTGTCTGCCTTTC	NA	False	NA	NA	False	ATTAAA	-28	NA	43097469	43316598	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_43098057_43174794_43174930_43221523_43221723_43248130_43248206_43289510_43289544_43315794
transcript_40560.known	chr4	+	2287	2	FSM	ENSMUSG00000046694.7	ENSMUST00000051676.7	2287	2	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATAACTGTATCTTTCTCCT	NA	False	NA	13	True	AATAAA	-17	NA	133207442	133215249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_133207875_133213394
transcript_40561.nic	chr4	+	1935	4	NIC	ENSMUSG00000037600.17	novel	1708	4	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	23.3666428910958	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGCCTGGTCATCAGTT	5475	False	NA	9	True	NA	NA	NA	133246277	133258101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_133246364_133255050_133256321_133257141_133257217_133257597
transcript_40562.known	chr4	+	1708	4	FSM	ENSMUSG00000037600.17	ENSMUST00000042919.16	1708	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	34.6698716467194	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGCCTGGTCATCAGTT	5500	False	NA	9	True	NA	NA	NA	133246302	133258101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_133246364_133255252_133256321_133257141_133257217_133257597
transcript_40563.nic	chr4	+	1917	4	NIC	ENSMUSG00000037600.17	novel	1699	4	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	21.9544984001001	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGCCTGGTCATCAGTT	5552	False	NA	9	True	NA	NA	NA	133246354	133258101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_133246423_133255050_133256321_133257141_133257217_133257597
transcript_40571.known	chr4	-	1316	8	FSM	ENSMUSG00000028851.7	ENSMUST00000030665.7	1316	8	0	0	0	0	multi-exon	FALSE	canonical	3	2323	junction_4	508.87928082108	3735	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTCCCTCGTCTAGAC	4460	False	NA	NA	False	ATTAAA	-19	NA	133273307	133259852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133260111_133260505_133260625_133260716_133260801_133261538_133261854_133262820_133262887_133262978_133263183_133268449_133268528_133273115
transcript_4058.known	chr10	-	860	4	FSM	ENSMUSG00000019797.12	ENSMUST00000147196.3	860	4	0	0	0	0	multi-exon	TRUE	canonical	3	617	junction_3	154.165135127528	276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTCACCGGAGCACTCT	NA	False	NA	-12	True	AATAAA	-17	NA	43416964	43401128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_43401405_43406593_43406667_43408671_43409154_43416935
transcript_40590.known	chr4	+	1132	2	FSM	ENSMUSG00000037583.3	ENSMUST00000042706.3	1132	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGTAGTTGCTTGTGGAA	NA	False	NA	NA	False	AATAAA	-17	NA	133280686	133283847	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_133281277_133283305
transcript_40591.known	chr4	+	2004	7	FSM	ENSMUSG00000028850.3	ENSMUST00000030662.3	2004	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	9.82626864865578	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGCCTTAGTGAAGCCT	NA	False	NA	13	True	AATAAA	-20	NA	133302055	133311554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_133302522_133305217_133305646_133307096_133307272_133307961_133308022_133309782_133309905_133310292_133310421_133310929
transcript_40592.known	chr4	+	996	5	FSM	ENSMUSG00000028848.14	ENSMUST00000105899.2	996	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	62.5154980784765	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCAAAGGACTTCTAGAG	NA	False	NA	NA	False	NA	NA	NA	133311729	133318801	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_133312112_133313220_133313378_133315810_133315972_133317077_133317209_133318636
transcript_40593.known	chr4	+	1367	5	FSM	ENSMUSG00000028848.14	ENSMUST00000030661.14	1367	5	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_3	14.7394029729837	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTTTTTTTAGTGTGTGT	NA	False	NA	41	True	NA	NA	NA	133311672	133319046	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_133312181_133313220_133313378_133315810_133315972_133317077_133317209_133318636
transcript_40594.known	chr4	-	1613	1	FSM	ENSMUSG00000047281.4	ENSMUST00000057311.4	1613	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	199	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCTTCAGTTATTGGC	9829	False	NA	-10	True	AATAAA	-18	NA	133329479	133327866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133327900_133329500
transcript_40596.known	chr4	-	3979	4	FSM	ENSMUSG00000043257.16	ENSMUST00000062118.11	3979	4	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	27.7248384425711	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAAGTGCGTGG	NA	False	NA	NA	False	NA	NA	NA	133399958	133387697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133390103_133391968_133393091_133397048_133397172_133399629
transcript_4060.known	chr10	+	456	2	FSM	ENSMUSG00000045886.8	ENSMUST00000216543.2	456	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTCGGTGGTCATGGTGT	NA	False	NA	NA	False	AATAAA	-45	NA	43400101	43400641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_43400172_43400255
transcript_40600.known	chr4	-	990	3	FSM	ENSMUSG00000043257.16	ENSMUST00000067902.13	990	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	36	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTCTGTCTTCTTGTTTT	NA	False	NA	-2	True	NA	NA	NA	133399958	133389564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133390103_133397048_133397172_133399629
transcript_40602.nic	chr4	-	2160	3	ISM	ENSMUSG00000043257.16	ENSMUST00000062118.11	3979	4	8	3677	8	-1810	5prime_fragment	FALSE	canonical	3	69	junction_1	27.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGGGTTCAATACCATCC	NA	False	NA	NA	False	NA	NA	NA	133399950	133391374	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_133393091_133397048_133397172_133399629
transcript_40603.known	chr4	-	653	3	FSM	ENSMUSG00000043257.16	ENSMUST00000151837.2	653	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	56.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCCTGGCAGGAGCAGAG	NA	False	NA	NA	False	NA	NA	NA	133399958	133396067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133396269_133397048_133397172_133399629
transcript_40606.nic	chr4	-	2359	12	ISM	ENSMUSG00000003644.18	ENSMUST00000157067.9	2637	20	6980	-531	-4291	0	3prime_fragment	FALSE	canonical	3	996	junction_6	94.9394761531335	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGCGCCCGCTCTTCCTT	9254	False	NA	-9	True	AATAAA	-14	NA	133592644	133574604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_133575486_133575832_133575971_133578011_133578130_133578248_133578326_133578475_133578638_133587363_133587523_133587821_133587912_133588127_133588254_133588726_133588858_133590958_133591062_133591316_133591382_133592335
transcript_40611.known	chr4	-	881	6	FSM	ENSMUSG00000003038.16	ENSMUST00000100472.10	881	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	1086.09951661899	366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTCTGCCTAAAAGTCA	NA	False	NA	NA	False	TATAAA	-22	NA	133695204	133692330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694070_133694107_133694267_133694313_133695105
transcript_40614.known	chr4	-	973	6	FSM	ENSMUSG00000003038.16	ENSMUST00000105893.8	973	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	1060.38683507482	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAAAAGTTGTTAAAACAA	NA	False	NA	NA	False	NA	NA	NA	133694752	133692300	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133692885_133693261_133693358_133693739_133693791_133694076_133694107_133694267_133694313_133694585
transcript_40616.known	chr4	-	711	5	FSM	ENSMUSG00000003038.16	ENSMUST00000130809.8	711	5	0	0	0	0	multi-exon	FALSE	canonical	3	1835	junction_3	507.001664198452	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTATTTTTTATCAAGTTT	NA	False	NA	NA	False	NA	NA	NA	133695220	133692796	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133692885_133693261_133693358_133693739_133694107_133694267_133694313_133695105
transcript_4062.known	chr10	+	563	1	FSM	ENSMUSG00000045886.8	ENSMUST00000057649.8	563	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	307	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGGTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	43400079	43400642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_43400100_43400600
transcript_40622.known	chr4	-	3133	9	FSM	ENSMUSG00000012117.14	ENSMUST00000012262.12	3133	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	23.2025725944344	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATACAAGGTTTGTGTGGT	NA	False	NA	NA	False	AAAAAG	-21	NA	133728198	133696367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133698565_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727651_133728035
transcript_40623.known	chr4	-	2038	9	FSM	ENSMUSG00000012117.14	ENSMUST00000105887.8	2038	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	18.0346887968714	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACGAGGACTGAACAGAAC	NA	False	NA	NA	False	AATACA	-19	NA	133728182	133697503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133698568_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727705_133728035
transcript_40624.known	chr4	-	890	9	FSM	ENSMUSG00000012117.14	ENSMUST00000105889.4	890	9	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_8	21.5928228816892	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTACGCTGAGGAGCGGA	NA	False	NA	NA	False	NA	NA	NA	133728229	133698553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133698565_133707434_133707543_133710110_133710226_133718589_133718692_133719774_133719892_133721472_133721616_133724132_133724250_133727579_133727705_133728177
transcript_4063.known	chr10	+	1816	2	FSM	ENSMUSG00000047139.10	ENSMUST00000058714.10	1816	2	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAGTCTGTTGAATTTAT	NA	False	NA	10	True	AATAAA	-19	NA	43455164	43460261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_43455319_43458599
transcript_40634.known	chr4	-	3505	4	FSM	ENSMUSG00000050966.10	ENSMUST00000051674.3	3505	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	2.62466929133727	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTCTGATGCTTAGGAC	8250	False	NA	9	True	AATAAA	-30	NA	133746152	133730640	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133733633_133735221_133735407_133745363_133745561_133746021
transcript_40636.nic	chr4	+	2483	19	ISM	ENSMUSG00000012123.18	ENSMUST00000121391.8	4761	20	6168	3	-4218	0	3prime_fragment	FALSE	canonical	3	14	junction_1	44.6930891998105	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGCTGGTGGTCTCGTC	NA	False	NA	14	True	NA	NA	NA	133801930	133819812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_133802247_133802621_133802670_133802751_133802865_133803009_133803140_133806148_133806289_133807646_133807774_133808090_133808127_133808399_133808537_133808663_133808791_133809039_133809180_133809266_133809394_133809725_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
transcript_40638.nic	chr4	+	1985	15	ISM	ENSMUSG00000012123.18	ENSMUST00000121391.8	4761	20	10277	3	-109	0	3prime_fragment	FALSE	canonical	3	24	junction_2	42.4615071781106	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGCTGGTGGTCTCGTC	NA	False	NA	14	True	NA	NA	NA	133806039	133819812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_133806289_133807646_133807774_133808090_133808127_133808399_133808537_133808663_133808791_133809039_133809180_133809266_133809394_133809725_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
transcript_40639.nic	chr4	+	1292	8	ISM	ENSMUSG00000012123.18	ENSMUST00000121391.8	4761	20	13713	3	-147	0	3prime_fragment	FALSE	canonical	3	103	junction_1	10.7532624380336	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGCTGGTGGTCTCGTC	NA	False	NA	14	True	NA	NA	NA	133809475	133819812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_133809759_133809885_133809999_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
transcript_40641.nic	chr4	+	1039	7	NIC	ENSMUSG00000012123.18	novel	4761	20	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	39.282806530197	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTGCTGGTGGTCTCGTC	NA	False	NA	14	True	NA	NA	NA	133809615	133819812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_133809759_133814796_133814927_133816103_133816244_133816582_133816707_133818388_133818548_133819360_133819521_133819629
transcript_40642.known	chr4	-	514	2	FSM	ENSMUSG00000000682.8	ENSMUST00000000696.7	514	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGGTCCCACGTGTGATCG	NA	False	NA	-3	True	AATAAA	-19	NA	133822393	133820846	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133821212_133822244
transcript_40643.known	chr4	+	265	2	FSM	ENSMUSG00000012123.18	ENSMUST00000143295.2	265	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACTATGCTGCTGGTGGTC	1978	False	NA	9	True	NA	NA	NA	133818460	133819807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_133818548_133819629
transcript_40645.known	chr4	+	1573	15	FSM	ENSMUSG00000012126.17	ENSMUST00000074690.11	1573	15	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_2	24.8785827078437	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCTTCACAAGGCTCTC	NA	False	NA	15	True	AATAAA	-15	NA	133829893	133854087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_133829960_133835562_133835667_133836401_133836431_133836870_133836970_133839825_133839921_133840225_133840281_133840667_133840745_133843341_133843469_133850702_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
transcript_40655.known	chr4	+	2014	11	FSM	ENSMUSG00000012126.17	ENSMUST00000070246.9	2014	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	34.7489568188744	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGTTGGTGAATAAGGAATGT	NA	False	NA	NA	False	NA	NA	NA	133829915	133854904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_133829960_133835562_133835667_133836401_133836431_133836870_133836970_133850702_133850915_133851152_133851231_133852144_133852266_133852376_133852481_133853517_133853592_133853676_133853818_133853896
transcript_4066.known	chr10	-	1981	11	FSM	ENSMUSG00000019863.8	ENSMUST00000020012.7	1981	11	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	11.040380428228	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGGATTTTACTATAAT	NA	False	NA	NA	False	TATAAA	-6	NA	43777741	43750183	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_43750703_43752467_43752674_43757468_43757587_43758061_43758255_43760744_43760858_43760938_43761115_43764964_43765133_43770510_43770608_43771429_43771529_43772004_43772165_43777609
transcript_40669.known	chr4	-	743	3	FSM	ENSMUSG00000028843.9	ENSMUST00000030651.9	743	3	0	0	0	0	multi-exon	FALSE	canonical	3	1437	junction_2	42.5	760	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGTGGTGTCCGGGTC	9226	False	NA	-5	True	ATTAAA	-22	NA	133856100	133854716	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133855118_133855228_133855397_133855926
transcript_40671.known	chr4	-	518	2	FSM	ENSMUSG00000028843.9	ENSMUST00000105879.2	518	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGACTGCTTGTGGTGT	9276	False	NA	-12	True	ATTAAA	-15	NA	133856050	133854723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133855118_133855926
transcript_40672.known	chr4	-	368	2	FSM	ENSMUSG00000028843.9	ENSMUST00000136408.2	368	2	0	0	0	0	multi-exon	FALSE	canonical	3	1437	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCGACTCAGGTGACTGC	9278	False	NA	NA	False	NA	NA	NA	133856048	133855150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133855397_133855926
transcript_40673.known	chr4	-	3893	14	FSM	ENSMUSG00000037443.14	ENSMUST00000040271.12	3893	14	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_5	49.639648211447	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGGTTTCCTAGTGCCTC	NA	False	NA	NA	False	AATAAA	-15	NA	133914423	133857168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133858751_133859542_133859769_133861379_133861488_133864881_133864933_133866145_133866240_133875320_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883683_133894599_133894753_133900123_133900192_133914253
transcript_40676.nic	chr4	-	1905	9	ISM	ENSMUSG00000037443.14	ENSMUST00000040271.12	3893	14	27	18052	0	4335	5prime_fragment	FALSE	canonical	3	365	junction_5	45.0692175991552	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTTGTGTTCTTTGAAT	NA	False	NA	NA	False	NA	NA	NA	133914396	133875220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_133875476_133875919_133876073_133879414_133879601_133881119_133881238_133881573_133881708_133882987_133883683_133894599_133894753_133900123_133900192_133914253
transcript_40677.known	chr4	-	1994	3	FSM	ENSMUSG00000028840.11	ENSMUST00000030644.8	1994	3	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_2	27	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTGTTATCTCTTGCTTT	7668	False	NA	7	True	NA	NA	NA	133972903	133970599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133972242_133972335_133972399_133972614
transcript_40679.known	chr4	-	2020	2	FSM	ENSMUSG00000028840.11	ENSMUST00000129183.2	2020	2	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTATCAGTGTGCATGTAT	7718	False	NA	-11	True	NA	NA	NA	133972853	133970617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_133972399_133972614
transcript_40680.known	chr4	-	4509	3	FSM	ENSMUSG00000050890.16	ENSMUST00000105876.9	4509	3	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	10	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTGAAAGTTCTCTTGCT	4291	False	NA	NA	False	AATAAA	-18	NA	134014564	134002313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_134006428_134011556_134011859_134014471
transcript_40682.known	chr4	-	1039	2	FSM	ENSMUSG00000050890.16	ENSMUST00000142504.2	1039	2	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAACCCAACAA	4319	False	NA	NA	False	ATTAAA	-11	NA	134014536	134010884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_134011859_134014471
transcript_40683.known	chr4	-	573	3	FSM	ENSMUSG00000050890.16	ENSMUST00000127857.2	573	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	39	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAATAAAAAAGACTTACTAA	4294	False	NA	NA	False	NA	NA	NA	134014561	134006671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_134006853_134011556_134011859_134014471
transcript_40684.known	chr4	+	1886	9	FSM	ENSMUSG00000028834.14	ENSMUST00000105875.8	1886	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	6.8545149354276	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAACTATGAAAGAAGTGTGA	NA	False	NA	NA	False	AATAAA	-28	NA	134042430	134056940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_134042694_134043697_134043871_134046942_134047112_134048493_134048590_134050314_134050549_134052355_134052379_134052894_134053020_134055015_134055094_134056215
transcript_40687.known	chr4	+	3153	8	FSM	ENSMUSG00000028836.15	ENSMUST00000105874.9	3153	8	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_4	12.5324069711207	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTTTGCCTTGCAGA	2081	False	NA	16	True	AATAAA	-21	NA	134070516	134081795	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_134070648_134071318_134071528_134073213_134073361_134074650_134074805_134075787_134075957_134076595_134076702_134079261_134079397_134079693
transcript_40690.known	chr4	+	1224	7	FSM	ENSMUSG00000028836.15	ENSMUST00000105873.8	1224	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	102.834278763887	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGGCAGATGAGGCCCCACT	2056	False	NA	NA	False	GGGGCT	-35	NA	134070491	134079988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_134070648_134071318_134071528_134074650_134074805_134075787_134075957_134076595_134076702_134079261_134079397_134079693
transcript_40692.known	chr4	-	4126	11	FSM	ENSMUSG00000028838.12	ENSMUST00000030643.3	4126	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	6.57951365983839	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCGGGCTATAAATACGCT	7023	False	NA	0	True	AATAAA	-23	NA	134099869	134083682	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_134085142_134085288_134085458_134086395_134086557_134087059_134087147_134087842_134087933_134089611_134089719_134089893_134090027_134090393_134090514_134091891_134092000_134092208_134092300_134098268
transcript_40693.known	chr4	+	2248	11	FSM	ENSMUSG00000037366.15	ENSMUST00000105869.9	2248	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	4.79687398208458	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGGAAACTATTAACAGAGC	1779	False	NA	NA	False	NA	NA	NA	134123630	134153803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_134123736_134130280_134130416_134131403_134131555_134132316_134132414_134138214_134138284_134139077_134139217_134140652_134140767_134145352_134145445_134147179_134147351_134149688_134149844_134152783
transcript_40698.known	chr4	+	1060	5	FSM	ENSMUSG00000028832.12	ENSMUST00000030636.11	1060	5	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_1	251.409029273016	3444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTCTGTTCAGGTAGT	NA	False	NA	11	True	AATAAA	-27	NA	134195630	134201154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_134195741_134197413_134197487_134197977_134198151_134200114_134200307_134200642
transcript_40702.nnic	chr4	+	1027	5	NNC	ENSMUSG00000028832.12	novel	1060	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	448.061030999126	195	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTCTGTTCAGGTAGT	NA	False	NA	11	True	AATAAA	-27	NA	134195709	134201154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_134195741_134197367_134197487_134197977_134198151_134200114_134200307_134200642
transcript_40703.nnic	chr4	+	1166	5	NNC	ENSMUSG00000028832.12	novel	967	4	NA	NA	419	0	at_least_one_novel_splicesite	FALSE	canonical	2	31	junction_1	434.652159778368	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTCTGTTCAGGTAGT	NA	False	NA	11	True	AATAAA	-27	NA	134196138	134201154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_134196355_134197413_134197487_134197977_134198151_134200114_134200307_134200642
transcript_40704.nic	chr4	+	1472	4	NIC	ENSMUSG00000028832.12	novel	1060	5	NA	NA	0	0	intron_retention	FALSE	canonical	3	455	junction_1	267.265577448516	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTTTCTGTTCAGGTAGT	NA	False	NA	11	True	AATAAA	-27	NA	134195709	134201154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_134195741_134197413_134198151_134200114_134200307_134200642
transcript_40705.known	chr4	+	612	2	FSM	ENSMUSG00000028832.12	ENSMUST00000130253.2	612	2	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGAGAAGCGCGCTTCAGG	NA	False	NA	NA	False	NA	NA	NA	134195709	134197994	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_134195741_134197413
transcript_40706.known	chr4	+	2351	2	FSM	ENSMUSG00000037348.16	ENSMUST00000081525.4	2351	2	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTTGTTTTGACTCCTGT	NA	False	NA	19	True	AATAAA	-20	NA	134224007	134236124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_134224348_134234113
transcript_40707.known	chr4	+	1275	3	FSM	ENSMUSG00000078521.3	ENSMUST00000105866.3	1275	3	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_2	7.5	284	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTGGTGTCGTGCTTCC	NA	False	NA	20	True	AATAAA	-20	NA	134238309	134251238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_134238481_134248782_134248913_134250264
transcript_40709.known	chr4	-	2025	7	FSM	ENSMUSG00000046671.19	ENSMUST00000102550.10	2025	7	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_6	159.506530691797	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGTTCATCTCTGAGT	NA	False	NA	7	True	ATTAAA	-30	NA	134262579	134252860	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262392
transcript_40710.nnic	chr4	-	1906	7	NNC	ENSMUSG00000046671.19	novel	2025	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	55	junction_6	178.015604809117	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGTGAATTTTTTTCTTG	NA	False	NA	-7	True	ATTAAA	-16	NA	134262581	134252874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262499
transcript_40711.known	chr4	-	1969	7	FSM	ENSMUSG00000046671.19	ENSMUST00000116279.10	1969	7	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_6	102.782402298361	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTTTCTTGGTTCATC	NA	False	NA	0	True	ATTAAA	-23	NA	134262698	134252867	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_134253824_134256399_134256722_134257585_134257798_134257990_134258101_134259454_134259560_134259937_134260064_134262560
transcript_4072.known	chr10	+	2981	9	FSM	ENSMUSG00000019864.15	ENSMUST00000054418.12	2981	9	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_8	16.985287751463	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGCTGGTTTTTGGTCACTG	NA	False	NA	8	True	NA	NA	NA	43777802	43823858	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_43778533_43783754_43783907_43785902_43785972_43786788_43786914_43797382_43797432_43804318_43804456_43808358_43808543_43811994_43812088_43822416
transcript_40721.known	chr4	-	6549	9	FSM	ENSMUSG00000037295.8	ENSMUST00000037828.8	6549	9	0	0	0	0	multi-exon	TRUE	canonical	3	50	junction_1	8.8175960442742	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	134495335	134468864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_134474511_134475592_134475628_134476647_134476779_134477269_134477354_134477692_134477766_134482503_134482619_134484651_134484765_134486229_134486373_134495126
transcript_40723.nnic	chr4	+	1268	9	NNC	ENSMUSG00000028825.8	novel	701	5	NA	NA	-226	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8.16145667145271	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACAAGGTCTCTTTCTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	134606894	134623483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_134607046_134607200_134607352_134611324_134611488_134611829_134611994_134612560_134612699_134617612_134617741_134619533_134619614_134621644_134621719_134623264
transcript_40724.nnic	chr4	+	1019	8	NNC	ENSMUSG00000028825.8	novel	1514	10	NA	NA	3683	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	8.23630588879976	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACAAGGTCTCTTTCTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	134610803	134623483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_134610857_134611324_134611488_134611829_134611994_134612560_134612699_134617612_134617741_134619533_134619614_134621644_134621719_134623264
transcript_40726.known	chr4	-	1204	7	FSM	ENSMUSG00000028822.12	ENSMUST00000030626.12	1204	7	0	0	0	0	multi-exon	FALSE	canonical	3	544	junction_1	61.5938759582116	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTTTCTCGTTATACCTT	NA	False	NA	-20	True	ATTAAA	-19	NA	134642335	134625159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640507_134642199
transcript_40727.known	chr4	-	719	7	FSM	ENSMUSG00000028822.12	ENSMUST00000105863.2	719	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	233.0748568355	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGCACCCTGCTCACCC	NA	False	NA	NA	False	NA	NA	NA	134642326	134625701	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_134625788_134628010_134628072_134630960_134631054_134632654_134632723_134636923_134637037_134640401_134640573_134642199
transcript_40737.nic	chr4	+	2425	5	NIC	ENSMUSG00000037266.19	novel	2151	6	NA	NA	-17	0	intron_retention	FALSE	canonical	3	141	junction_3	314.200075588788	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGGATGTTGAATGT	NA	False	NA	21	True	AATAAA	-21	NA	134650885	134654683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_134651079_134651185_134651794_134652603_134652744_134653087_134654130_134654241
transcript_40738.known	chr4	+	1749	5	FSM	ENSMUSG00000037266.19	ENSMUST00000078084.7	1749	5	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_3	305.166348079207	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTAGTTGTGAATGGTAG	NA	False	NA	9	True	NA	NA	NA	134650902	134654982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_134651079_134651185_134651794_134652603_134652744_134654045_134654130_134654241
transcript_40740.known	chr4	+	3051	4	FSM	ENSMUSG00000037266.19	ENSMUST00000148900.8	3051	4	0	0	0	0	multi-exon	FALSE	canonical	3	813	junction_2	40.8493165997507	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTAGTTGTGAATGGTAG	NA	False	NA	9	True	NA	NA	NA	134650902	134654982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_134651079_134651185_134651794_134652603_134654130_134654241
transcript_40743.known	chr4	+	1369	7	FSM	ENSMUSG00000028821.9	ENSMUST00000030622.3	1369	7	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_5	39.6628149390445	739	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTGTCTGTAACTTAAACA	NA	False	NA	NA	False	AATAAA	-24	NA	134658208	134664859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_134658330_134658490_134658596_134661766_134661893_134662242_134662361_134662684_134662776_134663293_134663393_134664150
transcript_40750.known	chr4	-	4119	6	FSM	ENSMUSG00000037242.9	ENSMUST00000037099.9	4119	6	0	0	0	0	multi-exon	FALSE	canonical	3	1299	junction_1	75.0269284990396	137	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGATTCTTTTTTTTTTTTTT	NA	False	NA	0	True	AATAAA	-19	NA	135000125	134941279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_134944577_134945818_134946001_134950774_134950882_134953334_134953461_134966172_134966283_134999828
transcript_40756.known	chr4	-	3152	18	FSM	ENSMUSG00000028809.17	ENSMUST00000136342.9	3152	18	0	0	0	0	multi-exon	FALSE	canonical	3	663	junction_5	197.323579826916	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGGGTTTGACTATTGTTGG	NA	False	NA	-16	True	TTTAAA	-4	NA	135080555	135048404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
transcript_40758.known	chr4	-	3797	17	FSM	ENSMUSG00000028809.17	ENSMUST00000105861.8	3797	17	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_5	249.404846271579	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCACTCACATTTATTCG	NA	False	NA	0	True	AATAAA	-19	NA	135080632	135047794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067934_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
transcript_40761.nnic	chr4	-	964	8	NNC	ENSMUSG00000028809.17	novel	3797	17	NA	NA	0	1450	at_least_one_novel_splicesite	FALSE	canonical	3	160	junction_5	510.526898689691	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAAGGAAAAGACTCGAC	NA	False	NA	NA	False	NA	NA	NA	135080462	135068271	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135073626_135073757_135074045_135074169_135074425_135074516_135080407
transcript_40763.nic	chr4	-	922	7	ISM	ENSMUSG00000028809.17	ENSMUST00000030613.11	2940	17	-103	18928	5	1450	5prime_fragment	FALSE	canonical	3	1177	junction_2	62.6285344977298	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAAGGAAAAGACTCGAC	NA	False	NA	NA	False	NA	NA	NA	135080550	135068271	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
transcript_40765.nic	chr4	-	870	5	ISM	ENSMUSG00000028809.17	ENSMUST00000131373.8	619	6	-97	1226	5	0	5prime_fragment	FALSE	canonical	3	1232	junction_4	48.602983447521	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGACAAAG	NA	False	NA	NA	False	NA	NA	NA	135080550	135070947	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
transcript_40766.known	chr4	-	2847	4	FSM	ENSMUSG00000028809.17	ENSMUST00000134854.8	2847	4	0	0	0	0	multi-exon	FALSE	canonical	3	1232	junction_3	55.3955473541571	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGACAAAG	NA	False	NA	NA	False	NA	NA	NA	135080462	135070947	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_135071291_135071809_135074169_135074425_135074516_135080407
transcript_40767.known	chr4	-	3740	18	FSM	ENSMUSG00000028809.17	ENSMUST00000084846.12	3740	18	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_11	319.821966045795	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGAACATTGCCACTCACAT	NA	False	NA	-7	True	AATAAA	-12	NA	135080555	135047801	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_135048766_135049600_135049811_135051224_135051421_135052129_135052592_135054402_135054535_135056314_135056357_135056683_135056829_135059031_135059119_135059468_135059550_135065114_135065390_135067813_135067919_135068157_135068347_135069680_135069885_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
transcript_40768.known	chr4	-	619	6	FSM	ENSMUSG00000028809.17	ENSMUST00000131373.8	619	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	490.131655782403	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGATGAAGGACTCCTCAGT	NA	False	NA	NA	False	NA	NA	NA	135080453	135069721	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_135069795_135071174_135071291_135071809_135071981_135074045_135074169_135074425_135074516_135080407
transcript_40770.nic	chr4	-	1842	5	NIC	ENSMUSG00000043924.17	novel	2000	6	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_3	5.8309518948453	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTTTGTCACCTTGCA	5685	False	NA	0	True	ATTAAA	-17	NA	135125545	135096886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_135098022_135099187_135099273_135104301_135104385_135107962_135108150_135125193
transcript_40772.known	chr4	-	1801	5	FSM	ENSMUSG00000043924.17	ENSMUST00000105859.8	1801	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	5.49431524395898	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTTTGTCACCTTGCA	5729	False	NA	0	True	ATTAAA	-17	NA	135125501	135096886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_135098022_135099187_135099273_135104301_135104388_135107962_135108150_135125193
transcript_40775.known	chr4	-	1616	5	FSM	ENSMUSG00000043924.17	ENSMUST00000105858.8	1616	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	8.87059749960509	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTTTTTGTCACCTTGCA	7519	False	NA	0	True	ATTAAA	-17	NA	135112966	135096886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_135098022_135099187_135099273_135104301_135104385_135107962_135108150_135112840
transcript_40776.nic	chr4	-	935	5	NIC	ENSMUSG00000059713.13	novel	5111	5	NA	NA	35	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	31.244999599936	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCATTGAGCAGTCTCTTC	NA	False	NA	-4	True	AATAAA	-22	NA	135161099	135139618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_135139802_135145690_135145863_135147556_135147731_135152524_135152754_135160922
transcript_40777.nic	chr4	-	2008	13	NIC	ENSMUSG00000028803.19	novel	5153	12	NA	NA	19	127	combination_of_known_junctions	FALSE	canonical	2	10	junction_2	20.9103576142436	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGCCCCCTCTTTGCA	4207	False	NA	-25	True	AGTAAA	-14	NA	135221915	135179360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_135179884_135182183_135182216_135191096_135191192_135192998_135193063_135194157_135194247_135195816_135195953_135199195_135199293_135201634_135201781_135204743_135204804_135206846_135207019_135209782_135209852_135218243_135218594_135221740
transcript_40778.known	chr4	-	5153	12	FSM	ENSMUSG00000028803.19	ENSMUST00000102549.10	5153	12	0	0	0	0	multi-exon	FALSE	canonical	2	39	junction_10	9.94031776933574	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCGGGTCCTGTGTTGCAC	4188	False	NA	-3	True	ATTAAA	-22	NA	135221934	135176202	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_135179884_135191096_135191192_135192998_135193063_135194157_135194247_135195816_135195953_135199195_135199293_135201634_135201781_135204743_135204804_135206846_135207019_135209782_135209852_135218243_135218594_135221740
transcript_40783.known	chr4	-	2789	16	FSM	ENSMUSG00000037188.8	ENSMUST00000105855.2	2789	16	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_6	62.4956531821747	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCGGTTTTCATGCGCTTC	NA	False	NA	-2	True	AATAAA	-20	NA	135300941	135269198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_135270085_135273553_135273619_135275723_135275810_135276549_135276639_135277606_135277642_135279056_135279194_135279310_135279390_135279846_135280006_135281823_135281919_135283113_135283226_135283397_135283552_135284154_135284229_135284478_135284825_135286413_135286476_135288479_135288667_135300718
transcript_40789.known	chr4	+	1002	2	FSM	ENSMUSG00000086788.3	ENSMUST00000134416.2	1002	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTCCTGTGGTGTGAGCA	NA	False	NA	NA	False	TATAAA	-23	NA	135354084	135355796	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_135354357_135355066
transcript_4079.known	chr10	+	2352	8	FSM	ENSMUSG00000038160.8	ENSMUST00000039286.5	2352	8	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_3	36.7828709025918	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTATGTGGTGGCTCA	NA	False	NA	NA	False	AATAAA	-18	NA	44144353	44240287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44195455_44195551_44222952_44223071_44238911
transcript_40800.nnic	chr4	+	3230	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	-112	0	at_least_one_novel_splicesite	FALSE	canonical	3	216	junction_3	533.493960186576	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGATTAACTGGAATTAT	4574	False	NA	NA	False	AATAAA	-17	NA	135583310	135593126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_135583603_135585615_135585783_135586152_135586513_135589081_135589189_135590350_135590514_135590833_135590888_135591039
transcript_40806.nnic	chr4	+	3220	7	NNC	ENSMUSG00000028676.18	novel	2493	7	NA	NA	-112	0	at_least_one_novel_splicesite	FALSE	canonical	3	90	junction_3	565.56856839428	201	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGATTAACTGGAATTAT	4574	False	NA	NA	False	AATAAA	-17	NA	135583310	135593126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_135583603_135585615_135585783_135586152_135586513_135589091_135589189_135590350_135590514_135590833_135590888_135591039
transcript_40810.known	chr4	+	3058	6	FSM	ENSMUSG00000028676.18	ENSMUST00000105853.10	3058	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	578.7306800231	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGATTAACTGGAATTAT	4321	False	NA	NA	False	AATAAA	-17	NA	135583057	135593126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_135583603_135585615_135585721_135589084_135589189_135590350_135590514_135590833_135590888_135591039
transcript_40811.known	chr4	+	3754	6	FSM	ENSMUSG00000028676.18	ENSMUST00000126641.2	3754	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	623.730198082472	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGGTTTTTCTGTAGACT	4321	False	NA	23	True	AATAAA	-28	NA	135583057	135597219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_135583603_135585615_135585721_135589084_135589189_135590350_135590514_135590833_135590888_135594436
transcript_40824.known	chr4	+	717	3	FSM	ENSMUSG00000028676.18	ENSMUST00000129718.2	717	3	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_2	671.5	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTTTTTATTTTATTTT	4706	False	NA	NA	False	NA	NA	NA	135583442	135586542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_135583603_135585615_135585783_135586152
transcript_40826.known	chr4	-	630	3	FSM	ENSMUSG00000028675.13	ENSMUST00000142585.2	630	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	185.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATTGCTCATAAGAAAAAGG	NA	False	NA	NA	False	AATAGA	-36	NA	135600881	135599634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_135599766_135600205_135600411_135600587
transcript_40827.known	chr4	-	1919	3	FSM	ENSMUSG00000028675.13	ENSMUST00000030436.12	1919	3	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_2	18.5	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACATTCTTTTTATGTAAG	NA	False	NA	-2	True	AATAAA	-27	NA	135601161	135598228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_135599766_135600205_135600411_135600984
transcript_40831.known	chr4	+	2525	8	FSM	ENSMUSG00000028673.11	ENSMUST00000030434.5	2525	8	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_1	34.7786000351964	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTGTTTGTTTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	135648045	135667622	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_135648462_135650277_135650413_135652859_135652998_135657209_135657316_135660209_135660411_135662000_135662192_135664233_135664334_135666384
transcript_40834.known	chr4	+	1418	9	FSM	ENSMUSG00000028672.14	ENSMUST00000030432.8	1418	9	0	0	0	0	multi-exon	FALSE	canonical	3	659	junction_3	79.965617611571	283	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAAACGTGTGTTTATGGG	NA	False	NA	NA	False	ATTAAA	-23	NA	135673758	135689928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_135673852_135677860_135677945_135679681_135679790_135681167_135681264_135682897_135683047_135686033_135686098_135687287_135687477_135688093_135688220_135689419
transcript_40839.known	chr4	+	1430	11	FSM	ENSMUSG00000028671.17	ENSMUST00000102541.10	1430	11	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	18.7712546197637	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGATTCTCACAGATGGC	4562	False	NA	11	True	AATAAA	-19	NA	135691037	135695489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_135691100_135692644_135692768_135692876_135692993_135693313_135693428_135693680_135693858_135694123_135694238_135694322_135694390_135694481_135694568_135694662_135694741_135694899_135695015_135695111
transcript_40845.known	chr4	-	1626	10	FSM	ENSMUSG00000028670.15	ENSMUST00000067567.5	1626	10	0	0	0	0	multi-exon	TRUE	canonical	3	407	junction_1	24.7476149243608	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGCTCCCTTATGTGGTACA	NA	False	NA	-11	True	ATTAAA	-20	NA	135699937	135695534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_135696379_135696454_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
transcript_40848.known	chr4	-	1119	9	FSM	ENSMUSG00000028670.15	ENSMUST00000145350.2	1119	9	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_1	24.7474746186353	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGGGCTGTAGGCGGCGGG	NA	False	NA	NA	False	NA	NA	NA	135699899	135696074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_135696379_135696454_135696629_135696738_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
transcript_40849.nic	chr4	-	1730	9	NIC	ENSMUSG00000028670.15	novel	1626	10	NA	NA	-34	-6	intron_retention	FALSE	canonical	3	428	junction_2	20.3127884594902	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTCAGGGCTCCCTTATGT	NA	False	NA	-17	True	ATTAAA	-14	NA	135699971	135695540	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_135696629_135696738_135696841_135696911_135696986_135697113_135697185_135697269_135697318_135697764_135697831_135697918_135697951_135698170_135698277_135699828
transcript_4085.nnic	chr10	+	2215	7	NIC	ENSMUSG00000038160.8	novel	2352	8	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_5	103.891636921468	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTATGTGGTGGCTCA	NA	False	NA	NA	False	AATAAA	-18	NA	44144395	44240287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_44144581_44162027_44162194_44165858_44165987_44170591_44170671_44179562_44179726_44222952_44223071_44238911
transcript_40855.known	chr4	-	4708	11	FSM	ENSMUSG00000028668.6	ENSMUST00000030427.6	4708	11	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_6	17.5182761709022	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGAGCCTTTCCTCAT	7704	False	NA	-1	True	AATAAA	-17	NA	135749074	135730678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_135732989_135733481_135733661_135734422_135734535_135735090_135735272_135736356_135736455_135736556_135736713_135737060_135737176_135737539_135738720_135740180_135740288_135741710_135741768_135748861
transcript_40856.known	chr4	-	833	6	FSM	ENSMUSG00000059291.16	ENSMUST00000102536.11	833	6	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_1	3915.89487090754	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGGTTTGGATTTGGTTG	NA	False	NA	-59	True	NA	NA	NA	135780704	135777041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_135777328_135777590_135777702_135778481_135778614_135778924_135779032_135779877_135780029_135780658
transcript_40867.known	chr4	-	397	4	FSM	ENSMUSG00000059291.16	ENSMUST00000128733.2	397	4	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_2	4326.60739558786	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGAACACATTGACCTGG	NA	False	NA	NA	False	NA	NA	NA	135780739	135778551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_135778614_135778924_135779028_135779877_135780029_135780658
transcript_40868.nnic	chr4	+	568	4	NNC	ENSMUSG00000007872.4	novel	1278	3	NA	NA	14	-2	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	11.1455023315337	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATGACATCTTGCGCC	786	False	NA	9	True	AATAAA	-17	NA	135871188	135872701	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_135871490_135871604_135871688_135872190_135872198_135872524
transcript_40869.known	chr4	+	1278	3	FSM	ENSMUSG00000007872.4	ENSMUST00000008016.3	1278	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	1.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATGACATCTTGCGCCAC	405	False	NA	11	True	AATAAA	-19	NA	135870807	135872703	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_135871490_135871604_135871688_135872190
transcript_40871.known	chr4	+	4225	25	FSM	ENSMUSG00000036995.8	ENSMUST00000047526.8	4225	25	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_10	6.55532014643238	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTTCTGGTGATTGGAAAG	1322	False	NA	NA	False	NA	NA	NA	135933675	135972527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_135933959_135954718_135954792_135954873_135955020_135955709_135955785_135956710_135956761_135960549_135960662_135960874_135960961_135961334_135961411_135961638_135961726_135961894_135962005_135963685_135963756_135964007_135964096_135965486_135965536_135965642_135965831_135965909_135966044_135966202_135966298_135966491_135966670_135967428_135967515_135967661_135967778_135968316_135968385_135968465_135968577_135968683_135968880_135969966_135970193_135970758_135970853_135971099
transcript_40875.nnic	chr4	+	1298	11	NNC	ENSMUSG00000001604.15	novel	1251	11	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	306.737281724932	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGCTGAGCCCTGGAT	6571	False	NA	15	True	AATAAA	-26	NA	135975230	136002209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_135975429_135981056_135981120_135981775_135981882_135982460_135982600_135985219_135985298_135991757_135991922_135992182_135992240_135995319_135995475_135998543_135998691_136000954_136001027_136002090
transcript_40876.known	chr4	+	1251	11	FSM	ENSMUSG00000001604.15	ENSMUST00000102533.11	1251	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	231.929816970565	274	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGCTGAGCCCTGGAT	6603	False	NA	15	True	AATAAA	-26	NA	135975262	136002209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_135975429_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992240_135995319_135995475_135998543_135998691_136000954_136001027_136002090
transcript_40877.nic	chr4	+	1355	11	NIC	ENSMUSG00000001604.15	novel	1251	11	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_7	302.350392756484	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGCTGAGCCCTGGAT	6571	False	NA	15	True	AATAAA	-26	NA	135975230	136002209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_135975429_135981056_135981120_135981775_135981954_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992240_135995319_135995475_135998543_135998691_136000954_136001027_136002090
transcript_40878.nnic	chr4	+	1301	11	NNC	ENSMUSG00000001604.15	novel	1251	11	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	307.780457469281	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAATGCTGAGCCCTGGAT	6595	False	NA	15	True	AATAAA	-26	NA	135975254	136002209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_135975471_135981056_135981120_135981775_135981882_135982460_135982600_135985234_135985298_135991757_135991922_135992182_135992240_135995319_135995475_135998543_135998691_136000954_136001027_136002090
transcript_40885.known	chr4	+	2647	10	FSM	ENSMUSG00000066037.15	ENSMUST00000084219.12	2647	10	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_2	166.354225660371	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCATTGATTGGTGTTCT	NA	False	NA	NA	False	NA	NA	NA	136038335	136068174	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_136038401_136043671_136043796_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
transcript_40886.known	chr4	+	2543	10	FSM	ENSMUSG00000066037.15	ENSMUST00000131671.8	2543	10	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	97.5394823509124	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTATTTCAAATTCAATTGT	NA	False	NA	32	True	AATAAA	-26	NA	136038252	136067992	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_136038401_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
transcript_40889.known	chr4	+	21452	11	FSM	ENSMUSG00000066037.15	ENSMUST00000148843.10	21452	11	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	138.01771625411	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGTGTTGTGCCTCATTT	NA	False	NA	NA	False	AATAAA	-17	NA	136038278	136086758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_136038401_136041397_136041567_136043671_136043791_136044394_136044503_136046704_136046819_136054546_136054724_136056676_136056813_136059708_136059915_136063608_136063759_136066486_136066609_136066729
transcript_40890.known	chr4	+	7526	5	FSM	ENSMUSG00000001089.15	ENSMUST00000170102.8	7526	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	50.5488624995657	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCTCCTTTGAGTCAGTGA	4157	False	NA	11	True	AATAAA	-17	NA	136197071	136276626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_136197162_136248651_136248755_136266435_136266528_136267666_136270830_136272548
transcript_40891.known	chr4	+	7438	4	FSM	ENSMUSG00000001089.15	ENSMUST00000105849.9	7438	4	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_2	34.7658836600865	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTGAGTCAGTGATGCC	4157	False	NA	15	True	AATAAA	-21	NA	136197071	136276630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_136197162_136248651_136248755_136267666_136270830_136272548
transcript_40892.known	chr4	+	418	2	FSM	ENSMUSG00000001089.15	ENSMUST00000142248.2	418	2	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTCATACGTTTTCTT	4199	False	NA	NA	False	NA	NA	NA	136197113	136249021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_136197162_136248651
transcript_40894.known	chr4	-	2108	6	FSM	ENSMUSG00000006699.18	ENSMUST00000051477.13	2108	6	0	0	0	0	multi-exon	FALSE	canonical	3	1589	junction_5	116.347067002138	1609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGAAGGTTATTTTCCTC	NA	False	NA	-1	True	ATTAAA	-24	NA	137085031	137047006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_137048504_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
transcript_40896.known	chr4	-	1448	6	FSM	ENSMUSG00000006699.18	ENSMUST00000030417.10	1448	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	708.103664727136	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCTGGTGAAGCTTTATTC	NA	False	NA	NA	False	ATTAAA	-23	NA	137085010	137049072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_137049931_137056023_137056222_137056325_137056436_137059717_137059791_137063285_137063441_137084956
transcript_40898.nic	chr4	+	1405	10	ISM	ENSMUSG00000028763.19	ENSMUST00000030547.15	14187	97	8	58547	8	-16814	5prime_fragment	TRUE	canonical	3	21	junction_4	6.76227735764575	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTGTGCCGTCCCTAGT	NA	False	NA	NA	False	ATTAAA	-15	NA	137196087	137239394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_137196236_137228369_137228506_137229586_137229632_137235111_137235222_137235320_137235380_137235614_137235776_137237852_137237982_137238217_137238473_137238556_137238677_137239152
transcript_40899.nic	chr4	+	3545	28	NIC	ENSMUSG00000043411.16	novel	5722	28	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	555	junction_19	264.570952206992	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGACTTGAAGGACGTGT	550	False	NA	8	True	AATAAA	-20	NA	137321497	137383642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
transcript_409.known	chr1	-	742	5	FSM	ENSMUSG00000079658.10	ENSMUST00000185771.7	742	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	1265.55254730888	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGAGCTGTAAAGCTAATT	NA	False	NA	52	True	NA	NA	NA	16727138	16713414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16726519_16726684_16727045
transcript_40900.known	chr4	+	5722	28	FSM	ENSMUSG00000043411.16	ENSMUST00000055131.13	5722	28	0	0	0	0	multi-exon	FALSE	canonical	3	555	junction_19	271.050863574936	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATCCGGAGTGAGTTC	570	False	NA	17	True	ATTAAA	-27	NA	137321517	137385842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343026_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137364244_137364299_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
transcript_40902.known	chr4	+	5741	27	FSM	ENSMUSG00000043411.16	ENSMUST00000105840.8	5741	27	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_13	294.548307788895	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATCCGGAGTGAGTTC	503	False	NA	17	True	ATTAAA	-27	NA	137321450	137385842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352467_137352599_137355484_137355557_137360424_137360550_137360653_137360777_137361143_137361206_137362208_137362320_137365070_137365202_137365466_137365574_137366516_137366622_137371653_137371810_137377603_137377730_137380268_137380318_137382533_137382561_137383432
transcript_40905.known	chr4	+	2071	14	FSM	ENSMUSG00000043411.16	ENSMUST00000105839.8	2071	14	0	0	0	0	multi-exon	FALSE	canonical	3	659	junction_9	177.170128514572	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTGTTCCGTGCTTCCA	570	False	NA	NA	False	AATAAA	-6	NA	137321517	137352602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_137321828_137331833_137331955_137333062_137333220_137333999_137334128_137335368_137335494_137336308_137336418_137338000_137338135_137339016_137339100_137340992_137341173_137343023_137343153_137343668_137343819_137348372_137348571_137350584_137350700_137352470
transcript_40911.known	chr4	-	2522	12	FSM	ENSMUSG00000028766.11	ENSMUST00000030551.11	2522	12	0	0	0	0	multi-exon	FALSE	canonical	3	1320	junction_11	106.491531498949	541	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGCTGAGTCTTTGTGGTC	NA	False	NA	-2	True	AATAAA	-24	NA	137523695	137469043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_137470014_137470495_137470616_137470945_137471138_137473703_137473839_137475069_137475140_137476859_137477004_137479862_137480039_137481178_137481354_137482395_137482512_137482940_137483061_137485882_137486044_137523552
transcript_40915.nnic	chr4	-	850	3	NNC	ENSMUSG00000085823.8	novel	849	3	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_1	4.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTTTTGCCTTCATGT	NA	False	NA	NA	False	ATTAAA	-16	NA	137611281	137609680	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_137610167_137610538_137610721_137611099
transcript_40916.known	chr4	-	849	3	FSM	ENSMUSG00000085823.8	ENSMUST00000155349.8	849	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	7	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTTTTGCCTTCATGT	NA	False	NA	NA	False	ATTAAA	-16	NA	137611237	137609680	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_137610210_137610538_137610721_137611099
transcript_40917.known	chr4	+	3311	13	FSM	ENSMUSG00000028759.14	ENSMUST00000030541.13	3311	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	22.3320895176027	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCAGTACCTGTCCT	4565	False	NA	42	True	AATAAA	-40	NA	137943937	137970481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_137944052_137948836_137949035_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
transcript_40918.known	chr4	+	3361	13	FSM	ENSMUSG00000028759.14	ENSMUST00000165861.8	3361	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	26.2752524039045	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCAGTACCTGTCCT	5069	False	NA	42	True	AATAAA	-40	NA	137944441	137970481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_137944606_137948836_137949035_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
transcript_40919.known	chr4	+	3113	12	FSM	ENSMUSG00000028759.14	ENSMUST00000097836.10	3113	12	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	20.9126479187884	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCAGTACCTGTCCT	4565	False	NA	42	True	AATAAA	-40	NA	137943937	137970481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_137944052_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
transcript_40920.nic	chr4	+	3126	12	NIC	ENSMUSG00000028759.14	novel	3361	13	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	26.9615581863273	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGAACTACAGCTTAGTG	5084	False	NA	20	True	AATAAA	-18	NA	137944456	137970459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_137944606_137949399_137949500_137950800_137950961_137953199_137953360_137955954_137956099_137956990_137957069_137957674_137957827_137961553_137961645_137964458_137964619_137966847_137966960_137967931_137968049_137968756
transcript_40921.known	chr4	+	2120	11	FSM	ENSMUSG00000028757.5	ENSMUST00000030538.5	2120	11	0	0	0	0	multi-exon	FALSE	canonical	3	2240	junction_8	67.8427593778437	414	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGTGTTCTTTTAGTTC	NA	False	NA	37	True	NA	NA	NA	138032040	138039939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_138032350_138032465_138032577_138035553_138035641_138036660_138036765_138036900_138036996_138037494_138037589_138037913_138038063_138038151_138038300_138038720_138038842_138038950_138039058_138039144
transcript_40926.known	chr4	+	215	1	FSM	ENSMUSG00000083326.5	ENSMUST00000117723.2	215	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCCCTCTGCGTGTGAC	5631	False	NA	NA	False	NA	NA	NA	138153098	138153313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_138153100_138153300
transcript_40929.known	chr4	+	3944	5	FSM	ENSMUSG00000041241.13	ENSMUST00000105813.8	3944	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	84.9852928452918	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTACTTTTGGTTGTGGCTG	NA	False	NA	21	True	NA	NA	NA	138161987	138169573	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_138162191_138163490_138163711_138164938_138165027_138165552_138165673_138166260
transcript_40931.known	chr4	+	3733	4	FSM	ENSMUSG00000041241.13	ENSMUST00000044058.11	3733	4	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	1.24721912892465	215	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTTGGTTGTGGCTGGAT	NA	False	NA	24	True	NA	NA	NA	138161981	138169576	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_138162191_138164938_138165027_138165552_138165674_138166261
transcript_40932.nnic	chr4	+	1277	3	NIC	ENSMUSG00000041241.13	novel	3733	4	NA	NA	0	892	combination_of_known_splicesites	FALSE	canonical	3	11	junction_1	95	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAAGGCCAGTCCTCTCCG	NA	False	NA	14	True	NA	NA	NA	138161987	138167214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_138162191_138165552_138165674_138166261
transcript_40933.known	chr4	+	4444	2	FSM	ENSMUSG00000046447.4	ENSMUST00000050918.4	4444	2	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATAGTATTGGGTGAGCAT	5744	False	NA	NA	False	AATAAA	-14	NA	138181624	138187434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_138182663_138184028
transcript_40934.known	chr4	+	737	6	FSM	ENSMUSG00000028750.13	ENSMUST00000124660.7	737	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.01980390271856	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGAGAAGGCCTTCAAGCAG	NA	False	NA	NA	False	NA	NA	NA	138452635	138471005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_138452800_138453041_138453169_138458834_138458936_138461572_138461718_138463292_138463397_138470909
transcript_40938.known	chr4	-	2131	6	FSM	ENSMUSG00000041193.16	ENSMUST00000030524.14	2131	6	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	8.52291030106501	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCACATGTTTTGGTGTA	NA	False	NA	-5	True	AATAAA	-24	NA	138590780	138526559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_138527973_138528662_138528770_138531817_138531963_138533495_138533546_138546310_138546427_138590480
transcript_40941.nnic	chr4	+	876	4	NNC	ENSMUSG00000028751.14	novel	786	4	NA	NA	-75	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.4986771653491	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCTTCCATTATTTCTTC	NA	False	NA	NA	False	NA	NA	NA	138606595	138610128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_138606808_138607646_138607801_138607980_138608088_138609725
transcript_40942.known	chr4	+	786	4	FSM	ENSMUSG00000028751.14	ENSMUST00000105804.2	786	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.79869268479038	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCTTCCATTATTTCTTC	NA	False	NA	NA	False	NA	NA	NA	138606670	138610128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_138606808_138607661_138607801_138607980_138608088_138609725
transcript_40943.known	chr4	+	3318	17	FSM	ENSMUSG00000041143.17	ENSMUST00000050949.9	3318	17	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	8.00780868902348	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTAAGGGTTCTTCTTTTC	NA	False	NA	24	True	AATAAA	-15	NA	138700215	138786478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_138700599_138704518_138704634_138710931_138711077_138712442_138712562_138717852_138718032_138723708_138723884_138725334_138725363_138737779_138737913_138746883_138746982_138747356_138747501_138748169_138748290_138748931_138749097_138750241_138750379_138757139_138757225_138779811_138779930_138781210_138781329_138785422
transcript_40945.known	chr4	-	476	4	FSM	ENSMUSG00000050608.12	ENSMUST00000154642.2	476	4	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	1213.91661804078	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAACGCTTTCAACTCCAG	5298	False	NA	-131	True	NA	NA	NA	138858305	138831212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_138831324_138832300_138832411_138833166_138833215_138858098
transcript_40946.known	chr4	-	2549	4	FSM	ENSMUSG00000050608.12	ENSMUST00000143971.2	2549	4	0	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_1	67.4553350167518	2081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTCTGCCTTCCTCGG	5179	False	NA	NA	False	AATAAA	-38	NA	138858424	138829124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_138831324_138832300_138832411_138833166_138833215_138858232
transcript_4095.nnic	chr10	+	493	4	Antisense	novelGene_ENSMUSG00000038151.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	1.69967317119759	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTAAACACTCGGAACAGG	NA	False	NA	NA	False	AATGAA	-20	NA	44317228	44321317	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr10_+_44317329_44318670_44318850_44319642_44319731_44321191
transcript_40953.known	chr4	+	1674	9	FSM	ENSMUSG00000028745.19	ENSMUST00000102508.10	1674	9	0	0	0	0	multi-exon	FALSE	canonical	3	1402	junction_1	117.624136553685	1894	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGCGCTGGCTGTACGTTC	NA	False	NA	8	True	NA	NA	NA	138920209	139019129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_138920340_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
transcript_40958.known	chr4	+	1390	9	FSM	ENSMUSG00000028745.19	ENSMUST00000030518.16	1390	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	549.5206433793	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAACTGGTGTGTGAGAGAA	NA	False	NA	10	True	AAAACA	-15	NA	138921306	139018751	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_138921531_138966219_138966310_138984571_138984694_138989294_138989409_139007306_139007449_139007778_139007896_139014339_139014406_139015066_139015144_139018313
transcript_40966.known	chr4	-	1405	9	FSM	ENSMUSG00000028744.16	ENSMUST00000172747.8	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_7	44.5112345369121	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGCCTGTTTCTGCTGC	NA	False	NA	-5	True	AGTAAA	-13	NA	139037976	139025840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_139026281_139027536_139027723_139028322_139028416_139028560_139028704_139029100_139029189_139029735_139029866_139033753_139033920_139035039_139035162_139037939
transcript_40967.known	chr4	-	1532	9	FSM	ENSMUSG00000028744.16	ENSMUST00000053862.12	1532	9	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_8	18.155147341732	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCCTGTTTCTGCTGCTC	NA	False	NA	-3	True	AGTAAA	-15	NA	139038019	139025838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_139026281_139027536_139027723_139028322_139028416_139028560_139028704_139029100_139029189_139029735_139029866_139033753_139034002_139035039_139035162_139037939
transcript_40969.known	chr4	+	1288	7	FSM	ENSMUSG00000028743.8	ENSMUST00000073787.7	1288	7	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_5	35.9787746070127	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCGTCTCCTCTGCTGCCC	NA	False	NA	29	True	AATAAA	-40	NA	139038054	139045737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_139038388_139041414_139041603_139041777_139041883_139044020_139044118_139044244_139044345_139044880_139045011_139045402
transcript_4097.nnic	chr10	+	1102	4	Antisense	novelGene_ENSMUSG00000038151.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	2	junction_1	1.69967317119759	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTAGCTTTCATGGGAAG	NA	False	NA	NA	False	ATTAAA	-23	NA	44317228	44321926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr10_+_44317329_44318670_44318850_44319642_44319731_44321191
transcript_40977.known	chr4	-	930	8	FSM	ENSMUSG00000028741.14	ENSMUST00000030513.13	930	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	364.486667262665	849	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGACTCTTTCTTTTTTTT	5974	False	NA	-12	True	AATAAA	-34	NA	139079609	139074755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_139075114_139075231_139075309_139075631_139075784_139075992_139076061_139076316_139076399_139076924_139077029_139077746_139077806_139079579
transcript_40988.known	chr4	+	4706	23	FSM	ENSMUSG00000078517.13	ENSMUST00000042096.15	4706	23	0	0	0	0	multi-exon	FALSE	canonical	3	332	junction_13	34.6303979591618	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTGCATTCCTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	139079920	139104547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_139080029_139081471_139081597_139082122_139082189_139082402_139082497_139084813_139084943_139086550_139086678_139087340_139087491_139087767_139087936_139088190_139088263_139088572_139088636_139089406_139089530_139090476_139090574_139090967_139091091_139092505_139092706_139092828_139092979_139093685_139093848_139094404_139094525_139097185_139097324_139098234_139098409_139098906_139099118_139101119_139101205_139102390_139102521_139102656
transcript_40991.known	chr4	+	3382	15	FSM	ENSMUSG00000028737.16	ENSMUST00000039818.10	3382	15	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_3	22.7807876447301	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGATCGTGTGTGTC	NA	False	NA	26	True	NA	NA	NA	139350176	139377001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_139350509_139361025_139361120_139361207_139361301_139361974_139362023_139362699_139362856_139364269_139364420_139364496_139364572_139365685_139365874_139367923_139367998_139369387_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468
transcript_40992.nnic	chr4	+	2309	7	NNC	ENSMUSG00000028737.16	novel	4142	15	NA	NA	18721	0	intron_retention	FALSE	canonical	3	14	junction_1	86.9471423081607	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTTGATCGTGTGTGTC	5533	False	NA	26	True	NA	NA	NA	139369140	139377001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_139369278_139369387_139369585_139369824_139369873_139370700_139370854_139371422_139371545_139372289_139372409_139375468
transcript_40993.known	chr4	-	1979	10	FSM	ENSMUSG00000040972.9	ENSMUST00000039331.9	1979	10	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	13.4421485642992	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGCCCTATATTTTTC	NA	False	NA	1	True	ATTAAA	-28	NA	139974095	139754156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_139754390_139755034_139755074_139755359_139755553_139756008_139756095_139761661_139762137_139764733_139764850_139794447_139794567_139834565_139834688_139884771_139884885_139973612
transcript_40995.nic	chr4	+	676	2	ISM	ENSMUSG00000087084.2	ENSMUST00000126252.2	1720	3	-189	3088	-189	-3088	5prime_fragment	FALSE	canonical	3	28	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCTTTTTTTGGCTGGGG	NA	False	NA	NA	False	NA	NA	NA	140107751	140109797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_140108031_140109400
transcript_40996.nnic	chr4	-	710	3	Antisense	novelGene_ENSMUSG00000086159.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_2	2	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGAGGAGAGGTTGGAGG	NA	False	NA	NA	False	NA	NA	NA	140412369	140410725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr4_-_140411134_140411591_140411749_140412224
transcript_40999.nic	chr4	-	907	4	ISM	ENSMUSG00000040935.13	ENSMUST00000038749.11	2333	16	11513	0	1913	0	intron_retention	FALSE	canonical	3	19	junction_1	1.24721912892465	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTTTACGCCGCCTGAC	NA	False	NA	NA	False	AATAAA	-19	NA	140458441	140454665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_140455121_140456177_140456340_140457019_140457091_140458222
transcript_41.known	ERCC-00113	+	825	1	FSM	ERCC-00113A	DQ883663	825	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2299	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00113_+_0_800
transcript_41000.known	chr4	-	2316	16	FSM	ENSMUSG00000025330.7	ENSMUST00000026381.7	2316	16	0	0	0	0	multi-exon	TRUE	canonical	3	76	junction_4	15.9114214743163	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTTAGTTTACCACGGAG	NA	False	NA	-11	True	AATAAA	-14	NA	140501547	140473175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_140473669_140475396_140475538_140475768_140475837_140477659_140477763_140477891_140478037_140479841_140479997_140483683_140483792_140484812_140484925_140485132_140485237_140485332_140485512_140487248_140487375_140488911_140489030_140490705_140490774_140492881_140492949_140496621_140496803_140501399
transcript_41004.nnic	chr4	-	1081	5	NNC	ENSMUSG00000025330.7	novel	2316	16	NA	NA	7314	185	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	47.4368000607124	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCACGGCTGGCAAGAT	NA	False	NA	NA	False	AATAAA	-17	NA	140477922	140472990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_140473669_140475396_140475538_140475768_140475837_140477659_140477763_140477831
transcript_41006.known	chr4	-	3072	16	FSM	ENSMUSG00000025328.10	ENSMUST00000026377.9	3072	16	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_8	5.0710507348631	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTGGGTGTTGGCCTTTC	NA	False	NA	0	True	AATAAA	-14	NA	140537959	140512675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_140513946_140516147_140516274_140517023_140517104_140518473_140518577_140518668_140518814_140520288_140520441_140521147_140521256_140522923_140523036_140523123_140523228_140523647_140523827_140525359_140525486_140526215_140526334_140527391_140527454_140528855_140528929_140530777_140530959_140537826
transcript_41007.nnic	chr4	+	1250	2	NNC	ENSMUSG00000085918.2	novel	2001	3	NA	NA	3381	-20	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTATTATTTTTAAATTG	NA	False	NA	NA	False	NA	NA	NA	140541684	140544802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_140542139_140544006
transcript_4101.known	chr10	-	5281	8	FSM	ENSMUSG00000038151.14	ENSMUST00000039174.11	5281	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	19.4967291867019	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCAATGCTTGTCTAGTG	NA	False	NA	-7	True	ATTAAA	-18	NA	44334744	44313172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_44316239_44316654_44316784_44317054_44318161_44322787_44323041_44326114_44326235_44332620_44332867_44332976_44333056_44334462
transcript_41013.known	chr4	+	1142	8	FSM	ENSMUSG00000009863.15	ENSMUST00000010007.9	1142	8	0	0	0	0	multi-exon	FALSE	canonical	3	2820	junction_2	205.868890316143	2623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGCGTTACTCTCCATTAT	NA	False	NA	NA	False	AATAAA	-14	NA	140688513	140706504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425_140703528_140704688_140704812_140706335
transcript_4102.nic	chr10	-	1330	3	ISM	ENSMUSG00000038151.14	ENSMUST00000218369.2	2517	7	15965	-438	15965	438	3prime_fragment	FALSE	canonical	3	47	junction_2	4	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCTTTGTAATTTGAGTA	NA	False	NA	NA	False	ATTAAA	-22	NA	44317241	44315224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_44316239_44316654_44316784_44317054
transcript_41020.known	chr4	+	1232	6	FSM	ENSMUSG00000009863.15	ENSMUST00000129181.8	1232	6	0	0	0	0	multi-exon	FALSE	canonical	3	2820	junction_2	227.940694041235	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGTGAGTTTGCTGCTCT	NA	False	NA	NA	False	NA	NA	NA	140688711	140704107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974_140701092_140703425
transcript_41023.known	chr4	+	1065	5	FSM	ENSMUSG00000009863.15	ENSMUST00000125780.2	1065	5	0	0	0	0	multi-exon	FALSE	canonical	3	2820	junction_2	248.862788500009	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCACCACCACTTCAGACA	NA	False	NA	NA	False	NA	NA	NA	140688713	140701608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_140688788_140693805_140693940_140698447_140698534_140700193_140700331_140700974
transcript_4103.known	chr10	+	10933	15	FSM	ENSMUSG00000019849.12	ENSMUST00000099858.4	10933	15	0	0	0	0	multi-exon	FALSE	canonical	3	732	junction_5	67.3298687395854	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTATTTTTACTTATGG	NA	False	NA	NA	False	TATAAA	-15	NA	44943298	45043294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_44943472_44948148_44948224_44967088_44967223_44968757_44968889_44971076_44971287_44973488_44973611_44983867_44983974_44991158_44991351_44996738_44996937_45002059_45002164_45024080_45024218_45026531_45026627_45029150_45029283_45031611_45031769_45034327
transcript_41034.known	chr4	-	1906	8	FSM	ENSMUSG00000028923.15	ENSMUST00000030760.15	1906	8	0	0	0	0	multi-exon	TRUE	canonical	3	362	junction_3	45.6883855200484	166	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGATGGATATGTTTTT	8485	False	NA	-10	True	AATAAA	-22	NA	140805668	140793822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_140794924_140795505_140795591_140797366_140797545_140799839_140799949_140800818_140800901_140800985_140801091_140802270_140802372_140805523
transcript_41037.known	chr4	-	3202	4	FSM	ENSMUSG00000040842.18	ENSMUST00000148204.8	3202	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	172.554017307303	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGCTTCCTGTCTCAT	NA	False	NA	0	True	AATACA	-31	NA	140867038	140840311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_140843176_140845837_140846090_140847634_140847685_140867002
transcript_41040.known	chr4	-	3203	3	FSM	ENSMUSG00000040842.18	ENSMUST00000094549.11	3203	3	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_2	123	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGGCTTCCTGTCTCAT	NA	False	NA	0	True	AATACA	-31	NA	140867086	140840311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_140843176_140845837_140846093_140867002
transcript_41042.known	chr4	+	5934	10	FSM	ENSMUSG00000028920.10	ENSMUST00000030757.10	5934	10	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_2	13.4283650402542	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACTGTTTTATTAGTATA	NA	False	NA	15	True	AATAAA	-19	NA	140875223	140931373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_140875491_140895023_140895289_140898134_140898252_140907708_140907844_140920975_140921130_140922491_140922603_140924793_140924891_140925352_140925410_140926240_140926358_140926759
transcript_41046.known	chr4	+	985	6	FSM	ENSMUSG00000073733.5	ENSMUST00000097813.3	985	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	1.26491106406735	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGGAGGGCTCTCACAT	NA	False	NA	NA	False	NA	NA	NA	140941266	140947459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_140941375_140941633_140941784_140944562_140944716_140945415_140945541_140945848_140945986_140947147
transcript_41049.known	chr4	+	3414	17	FSM	ENSMUSG00000028919.12	ENSMUST00000006618.9	3414	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	20.7777487652055	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCATGTAGCATCTGCTTC	3667	False	NA	14	True	TTTAAA	-18	NA	140970179	140984875	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_140970322_140972128_140972278_140973485_140973921_140974259_140974542_140974688_140974798_140974864_140974942_140975157_140975421_140976297_140976459_140976537_140976691_140976876_140977007_140977873_140977949_140978038_140978129_140978254_140978416_140981600_140981760_140982011_140982092_140983614_140983720_140984032
transcript_41053.known	chr4	+	3913	17	FSM	ENSMUSG00000006445.4	ENSMUST00000006614.3	3913	17	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_7	17.9965274428152	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGCTTTCATTCCTGGA	NA	False	NA	8	True	AATAAA	-22	NA	141028550	141056695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_141028746_141033824_141033893_141035715_141036392_141043897_141044054_141044181_141044515_141045792_141045909_141046233_141046388_141047804_141047905_141048527_141048584_141048775_141048902_141049012_141049202_141049373_141049436_141049513_141049724_141049896_141050047_141050723_141050918_141051542_141051699_141055723
transcript_41056.nic	chr4	-	1457	6	ISM	ENSMUSG00000033770.14	ENSMUST00000105790.8	2511	19	8164	0	4787	0	3prime_fragment	FALSE	canonical	3	33	junction_5	1.6	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACTGTTCACCCATCTTC	NA	False	NA	1	True	AATAAA	-20	NA	141117351	141111920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_141112260_141112587_141112675_141114383_141114468_141114599_141114689_141115444_141115579_141116627
transcript_41057.nnic	chr4	-	917	7	NNC	ENSMUSG00000006216.11	novel	2370	20	NA	NA	-2954	0	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_6	35.5387112878337	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTAGTGTCCCCTCTCCTCCC	4181	False	NA	-4	True	AATAAA	-18	NA	141135622	141131663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_141131944_141132063_141132151_141132362_141132447_141132582_141132672_141134399_141134534_141135114_141135329_141135593
transcript_41060.known	chr4	-	905	2	FSM	ENSMUSG00000070637.3	ENSMUST00000094544.3	905	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGAAGGGAGTCTGACCTTG	NA	False	NA	NA	False	AATAAA	-29	NA	141163416	141159982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_141160768_141163296
transcript_41063.known	chr4	+	2722	16	FSM	ENSMUSG00000006215.13	ENSMUST00000006377.13	2722	16	0	0	0	0	multi-exon	TRUE	canonical	3	129	junction_3	19.5436832648187	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGCCTGTGGTCCCTGTG	NA	False	NA	5	True	AATAAA	-15	NA	141171964	141194536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_141172114_141174561_141174649_141189079_141189287_141189845_141190035_141190577_141190719_141190983_141191107_141191547_141191790_141191870_141192014_141192099_141192401_141192659_141192748_141192834_141192952_141193032_141193154_141193287_141193419_141193658_141193869_141193984_141194075_141194153
transcript_41068.nic	chr4	+	534	2	ISM	ENSMUSG00000006215.13	ENSMUST00000144899.2	338	3	-68	11710	-16	-11710	5prime_fragment	FALSE	canonical	3	179	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCCAAGAAAAATCCTGGTA	NA	False	NA	NA	False	NA	NA	NA	141171948	141174930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_141172114_141174561
transcript_4107.known	chr10	+	1853	4	FSM	ENSMUSG00000019848.15	ENSMUST00000019994.14	1853	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0.942809041582063	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAAGATGACTTTCTTGC	NA	False	NA	NA	False	AATAAA	-24	NA	45165400	45194548	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_45165672_45190656_45191376_45192526_45192636_45193794
transcript_41070.nic	chr4	-	3107	9	NIC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	-37	0	combination_of_known_junctions	FALSE	canonical	3	77	junction_8	503.602134005606	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	-4	True	AATAAA	-14	NA	141325572	141303372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141325424
transcript_41071.known	chr4	-	3036	9	FSM	ENSMUSG00000006219.13	ENSMUST00000105784.8	3036	9	0	0	0	0	multi-exon	FALSE	canonical	3	1168	junction_5	205.258944689385	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTGTCTTGTTTTTGTCT	NA	False	NA	-4	True	AATAAA	-14	NA	141327235	141303372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141327158
transcript_41077.nic	chr4	-	1868	9	NIC	ENSMUSG00000006219.13	novel	3101	9	NA	NA	-37	-1239	combination_of_known_junctions	FALSE	canonical	3	77	junction_8	503.602134005606	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTTGGATTTGGGGGA	NA	False	NA	-34	True	NA	NA	NA	141325572	141304611	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_141305255_141308293_141308412_141310364_141310544_141312006_141312177_141316608_141316727_141317254_141317437_141322534_141322791_141323205_141323260_141325424
transcript_41082.known	chr4	-	2898	6	FSM	ENSMUSG00000043085.15	ENSMUST00000143154.8	2898	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	37.2526509123847	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAGAATTAAAAATAAAAAG	NA	False	NA	NA	False	NA	NA	NA	141345944	141340686	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_141342018_141342255_141342422_141343514_141343933_141344605_141344781_141344950_141345024_141345209
transcript_41083.known	chr4	-	1671	6	FSM	ENSMUSG00000043085.15	ENSMUST00000053263.9	1671	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	22.4535075210979	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCGTTGAGGATCACAGT	NA	False	NA	-4	True	AATAAA	-16	NA	141345549	141341543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_141342018_141342255_141342447_141343514_141343933_141344605_141344781_141344950_141345024_141345209
transcript_41086.known	chr4	-	2478	5	FSM	ENSMUSG00000043085.15	ENSMUST00000156246.2	2478	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	19.536824204563	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACCTGCGTTGAGGATCA	NA	False	NA	-8	True	AATAAA	-12	NA	141345292	141341547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_141342018_141342255_141343933_141344605_141344781_141344950_141345024_141345209
transcript_41091.known	chr4	-	2670	5	FSM	ENSMUSG00000040740.8	ENSMUST00000038661.8	2670	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGCAATTGCCCTCTGC	NA	False	NA	-4	True	AATAAA	-18	NA	141351132	141346134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_141347906_141348688_141348824_141349514_141349668_141349752_141349819_141350587
transcript_41092.known	chr4	+	1407	7	FSM	ENSMUSG00000040706.5	ENSMUST00000038161.5	1407	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	1.49071198499986	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCCTGTGGAGTTCAG	NA	False	NA	NA	False	ATTAAA	-15	NA	141473982	141486574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_141474411_141476885_141477089_141482135_141482185_141483109_141483306_141484696_141484877_141485649_141485735_141486308
transcript_41093.known	chr4	-	5969	15	FSM	ENSMUSG00000040697.11	ENSMUST00000038014.11	5969	15	0	0	0	0	multi-exon	TRUE	canonical	3	44	junction_12	6.2974727681274	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCTCTGGGGCACCTCT	NA	False	NA	-12	True	AATAAA	-15	NA	141518202	141487499	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_141491206_141491878_141492050_141493794_141493894_141493972_141494054_141495018_141495096_141495201_141495385_141497163_141497348_141498217_141498349_141501811_141501971_141502676_141502782_141504205_141504391_141510083_141510418_141511998_141512066_141516199_141516385_141517900
transcript_41095.known	chr4	+	3897	9	FSM	ENSMUSG00000028914.14	ENSMUST00000030747.11	3897	9	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_8	15.5060472074607	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTTGGCATTTTTCCGG	NA	False	NA	39	True	AATAAA	-21	NA	141520922	141543287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_141521298_141523745_141524146_141531131_141531167_141532672_141532850_141533140_141533231_141534425_141534574_141538849_141539030_141539517_141539628_141540905
transcript_41097.nnic	chr4	+	1493	9	NNC	ENSMUSG00000028914.14	novel	3897	9	NA	NA	-50	2315	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_8	62.3326509543754	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAACCAAGGCCTTTTAT	NA	False	NA	NA	False	ATTAAA	-4	NA	141521104	141545602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_141521298_141523745_141524146_141531131_141531167_141532672_141532850_141533140_141533231_141534425_141534574_141538849_141539030_141539517_141539628_141545442
transcript_41098.nnic	chr4	-	930	6	NNC	ENSMUSG00000058579.6	novel	1070	8	NA	NA	-3022	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_5	47.5663746779172	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	9888	False	NA	-2	True	AATAAA	-18	NA	141549535	141542272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_141542367_141545175_141545329_141546292_141546439_141548635_141548773_141549012_141549142_141549264
transcript_41099.known	chr4	-	1070	8	FSM	ENSMUSG00000058579.6	ENSMUST00000102481.4	1070	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	46.1943542800085	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	5952	False	NA	-2	True	AATAAA	-18	NA	141553471	141542272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_141542367_141545175_141545329_141546292_141546439_141548635_141548773_141549012_141549142_141549540_141549639_141552840_141552936_141553253
transcript_411.known	chr1	-	620	5	FSM	ENSMUSG00000079658.10	ENSMUST00000187910.7	620	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	1109.6870054209	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGCAGATTCCTTCTGTCA	NA	False	NA	74	True	NA	NA	NA	16727262	16713392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_16713703_16715909_16716054_16717211_16717278_16718178_16718232_16727215
transcript_41100.nnic	chr4	-	598	4	NNC	ENSMUSG00000058579.6	novel	1070	8	NA	NA	-228	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	45.7019328548221	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	307	False	NA	-2	True	AATAAA	-18	NA	141546741	141542272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_141542367_141545175_141545329_141546292_141546439_141546536
transcript_41101.known	chr4	-	468	3	FSM	ENSMUSG00000058579.6	ENSMUST00000127962.2	468	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	12.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGAATGAGTCTGTCTT	535	False	NA	-2	True	AATAAA	-18	NA	141546513	141542272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_141542367_141545175_141545329_141546292
transcript_41105.known	chr4	-	1366	8	FSM	ENSMUSG00000051435.12	ENSMUST00000036701.8	1366	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	3.33197251134017	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATAGTGTTTCATTGCTTC	3716	False	NA	NA	False	AGTAAA	-29	NA	141660400	141643599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_141643864_141645584_141645692_141646058_141646144_141648047_141648274_141649554_141649729_141655690_141655796_141656840_141656949_141660103
transcript_41106.known	chr4	+	630	2	FSM	ENSMUSG00000085761.2	ENSMUST00000126231.2	630	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACAGCTTTGTAAAGTTCTG	NA	False	NA	NA	False	CATAAA	-12	NA	141745208	141756307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_141745442_141755910
transcript_41109.known	chr4	-	1875	3	FSM	ENSMUSG00000040616.4	ENSMUST00000036572.4	1875	3	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_2	4	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGACCTCATTCAGTCA	9800	False	NA	-6	True	AATAAA	-18	NA	141811615	141758302	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_141759406_141764715_141765245_141811372
transcript_4111.known	chr10	+	782	1	FSM	ENSMUSG00000110841.2	ENSMUST00000217344.2	782	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	818	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGATACACAAAATG	NA	False	NA	NA	False	AATAAA	-34	NA	45751400	45752182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_45751400_45752200
transcript_41110.nnic	chr4	-	2058	3	NNC	ENSMUSG00000040616.4	novel	1875	3	NA	NA	-606	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	75.5	107	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTGACCTCATTCAGTCA	9594	False	NA	-6	True	AATAAA	-18	NA	141812221	141758302	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_141759406_141764715_141765245_141811795
transcript_41111.known	chr4	-	1817	6	FSM	ENSMUSG00000028583.15	ENSMUST00000030317.14	1817	6	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_2	58.6153563496802	196	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGCCAACATTTGACACT	NA	False	NA	-23	True	AATAAA	-20	NA	143026134	142994000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_142994997_142995757_142995870_142997092_142997132_143000469_143000627_143002640_143002778_143025758
transcript_41112.known	chr4	+	3886	5	FSM	ENSMUSG00000046862.15	ENSMUST00000059790.11	3886	5	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_2	51.5866988670529	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTTTCACTTCCTTTG	NA	False	NA	10	True	AATAAA	-17	NA	143138995	143147661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_143139662_143141918_143141984_143143209_143143523_143143942_143144531_143145407
transcript_41114.known	chr4	+	3260	4	FSM	ENSMUSG00000046862.15	ENSMUST00000037356.8	3260	4	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	39.6316371938716	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTTTCACTTCCTTTG	NA	False	NA	10	True	AATAAA	-17	NA	143139556	143147661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_143139662_143143209_143143523_143143942_143144531_143145407
transcript_41116.known	chr4	+	2055	4	FSM	ENSMUSG00000095409.2	ENSMUST00000178489.2	2055	4	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	2.35702260395516	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCTTTTGGTATTTTTTCC	NA	False	NA	NA	False	NA	NA	NA	143237912	143244401	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_143237929_143241606_143241904_143242379_143242971_143243250
transcript_41117.nnic	chr4	+	2666	4	NNC	ENSMUSG00000078508.2	novel	1745	3	NA	NA	-3302	784	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	5.90668171555645	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTTGAGTATTTTTTTTC	NA	False	NA	NA	False	AATGAA	-13	NA	144053516	144060819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_144053628_144056792_144057106_144057681_144058255_144059150
transcript_41118.nnic	chr4	-	3087	5	NNC	ENSMUSG00000028591.12	novel	2460	4	NA	NA	3640	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	45.3396901180412	65	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGGTTTTGCTT	NA	False	NA	-4	True	AATAAA	-15	NA	144131347	144118243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_144119688_144121144_144121730_144122249_144122573_144129907_144130021_144130725
transcript_4112.nic	chr10	+	1740	4	ISM	ENSMUSG00000038774.10	ENSMUST00000035606.10	7760	42	15	232531	15	18	5prime_fragment	FALSE	canonical	3	92	junction_3	4.71404520791032	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAGTTTTGATCAATTTC	NA	False	NA	NA	False	NA	NA	NA	50468779	50495050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_50468994_50480846_50480979_50484015_50484167_50493807
transcript_41120.nic	chr4	-	2648	4	NIC	ENSMUSG00000028591.12	novel	2460	4	NA	NA	4784	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	38.7843038125248	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGGTTTTGCTT	NA	False	NA	-4	True	AATAAA	-15	NA	144130203	144118243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_144119688_144121144_144121730_144122249_144122573_144129907
transcript_41121.known	chr4	-	2460	4	FSM	ENSMUSG00000028591.12	ENSMUST00000030326.10	2460	4	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_3	9.80929264637478	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTGTTGGTTTTGCTT	NA	False	NA	-4	True	AATAAA	-15	NA	144135034	144118243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_144119688_144121144_144121730_144122249_144122573_144134926
transcript_41123.known	chr4	+	1349	7	FSM	ENSMUSG00000066026.15	ENSMUST00000171001.8	1349	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	68.47627326308	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCGTTCACGTGTTTGG	5696	False	NA	12	True	AATAAA	-19	NA	144619396	144654215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_144619481_144620154_144620280_144645220_144645365_144645954_144646075_144646410_144646650_144650475_144650602_144653704
transcript_41124.known	chr4	+	2337	6	FSM	ENSMUSG00000066026.15	ENSMUST00000154208.8	2337	6	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	25.4982352330509	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAGCAGTGTGACCTGGT	5946	False	NA	NA	False	AATAAA	-24	NA	144619646	144654779	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_144620280_144645220_144645365_144645954_144646075_144646410_144646650_144650475_144650602_144653704
transcript_41125.known	chr4	-	3818	10	FSM	ENSMUSG00000028599.11	ENSMUST00000030336.11	3818	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_7	11.2546286774228	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGCTTATCTGTTTGTT	7832	False	NA	NA	False	AATAAA	-38	NA	144973440	144940032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_144942671_144946298_144946507_144949523_144949559_144950072_144950151_144950821_144951055_144951381_144951476_144951899_144952053_144954037_144954167_144955573_144955677_144973293
transcript_4113.known	chr10	+	3024	11	FSM	ENSMUSG00000019891.16	ENSMUST00000069004.14	3024	11	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_2	11.5134703716994	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCCCTGACTTCTATTTG	NA	False	NA	6	True	AATAAA	-16	NA	52109714	52197472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_52109932_52137822_52138036_52160198_52160334_52162443_52162496_52166946_52167020_52180682_52180817_52187495_52187537_52188909_52188998_52190450_52190501_52193127_52193248_52195571
transcript_41140.nnic	chr4	+	2443	6	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14353	777	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	37.880865882395	27	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145158956	145178235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_145159032_145160315_145160385_145173065_145173196_145173287_145173342_145176036_145176245_145176328
transcript_41146.nnic	chr4	+	2374	5	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14353	777	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	40.1769523483303	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145158956	145178235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_145159032_145173065_145173196_145173287_145173342_145176036_145176245_145176328
transcript_41151.nnic	chr4	+	2535	5	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14353	777	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	35.5422284050958	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145158956	145178235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_145159032_145160315_145160385_145173065_145173342_145176036_145176245_145176328
transcript_41161.nnic	chr4	+	2310	5	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14303	777	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	42.0022320835453	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145159006	145178235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_145159018_145173065_145173196_145173287_145173342_145176036_145176245_145176328
transcript_41167.nnic	chr4	+	2439	4	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14326	777	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	39.6007856263259	17	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145158983	145178235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_145159032_145173065_145173342_145176036_145176245_145176328
transcript_4117.known	chr10	+	2795	10	FSM	ENSMUSG00000019891.16	ENSMUST00000218582.2	2795	10	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	48.9166587797331	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCCTGACTTCTATTTGGC	NA	False	NA	8	True	AATAAA	-18	NA	52109732	52197474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_52109932_52160198_52160334_52162443_52162496_52166946_52167020_52180682_52180817_52187495_52187537_52188909_52188998_52190450_52190501_52193127_52193248_52195571
transcript_41174.nnic	chr4	+	2259	4	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14353	777	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	40.5490101262931	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145158956	145178235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_145159032_145160315_145160385_145176036_145176245_145176328
transcript_41177.nnic	chr4	+	1675	4	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14353	777	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	40.5490101262931	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145158956	145178235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_145159032_145160315_145160385_145176036_145176495_145177162
transcript_41200.nnic	chr4	+	2343	3	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14353	777	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_1	15	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145158956	145178235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_145159032_145160315_145160385_145176036
transcript_41202.nnic	chr4	+	2189	3	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14352	777	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	16.5	36	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145158957	145178235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_145159032_145176036_145176245_145176328
transcript_4121.nic	chr10	+	1185	6	ISM	ENSMUSG00000019891.16	ENSMUST00000069004.14	3024	11	-5	16300	-5	-16300	5prime_fragment	TRUE	canonical	3	170	junction_2	13.4669966956259	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGAGTTTCAACGGCATTT	NA	False	NA	NA	False	TTTAAA	-4	NA	52109709	52181172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_52109932_52137822_52138036_52160198_52160334_52162443_52162496_52166946_52167020_52180682
transcript_41210.nnic	chr4	+	2200	3	Fusion	ENSMUSG00000085101.8_ENSMUSG00000082082.2	novel	375	3	NA	NA	-14336	768	multi-exon	TRUE	non_canonical	0	0	junction_2	29.5	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAAGTTTGCTTTGG	NA	False	NA	12	True	NA	NA	NA	145158973	145178226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145159152_145176036_145176327_145176494
transcript_41214.nnic	chr4	+	1975	3	Fusion	ENSMUSG00000085101.8_ENSMUSG00000082082.2	novel	375	3	NA	NA	-14336	2914	multi-exon	FALSE	canonical	2	4	junction_2	27.5	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTTATCCTGATTTTT	NA	False	NA	21	True	ATTAAA	-17	NA	145158973	145180372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145159152_145176036_145177478_145180016
transcript_41215.nnic	chr4	+	2414	3	Fusion	ENSMUSG00000085101.8_ENSMUSG00000082082.2	novel	375	3	NA	NA	-14304	777	multi-exon	FALSE	canonical	3	28	junction_1	34.5	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145159005	145178235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145159152_145160315_145160385_145176036
transcript_41217.nnic	chr4	+	2273	2	NNC	ENSMUSG00000082082.2	novel	1575	3	NA	NA	-14352	777	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_1	0	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	NA	False	NA	21	True	NA	NA	NA	145158957	145178235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_145159032_145176036
transcript_41218.nnic	chr4	+	2368	2	Fusion	ENSMUSG00000085101.8_ENSMUSG00000082082.2	novel	375	3	NA	NA	-14336	768	multi-exon	FALSE	canonical	3	59	junction_1	0	39	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTACAAGTTTGCTTTGG	NA	False	NA	12	True	NA	NA	NA	145158973	145178226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145159152_145176036
transcript_41224.nnic	chr4	+	2899	5	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-33	-234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	222.443251190051	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCTTAAAAGAGTATCTG	861	False	NA	40	True	AATAAA	-16	NA	145237295	145265524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_145237496_145239546_145239651_145257381_145257486_145261385_145261513_145263160
transcript_41228.known	chr4	+	3044	5	FSM	ENSMUSG00000078503.10	ENSMUST00000105741.2	3044	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	215.70972972956	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGATTGTTTCCAAT	5019	False	NA	NA	False	NA	NA	NA	145241453	145265758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_145241589_145247375_145247456_145257381_145257486_145261385_145261513_145263160
transcript_4123.nnic	chr10	+	3045	5	NNC	ENSMUSG00000023068.17	novel	4605	5	NA	NA	3	-981	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	165.410663199202	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGACTGTAGTAGTATGTGA	NA	False	NA	5	True	AATAAA	-18	NA	52293645	52315298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_52293689_52305288_52305415_52306162_52306313_52309440_52309541_52312672
transcript_41230.known	chr4	+	2996	4	FSM	ENSMUSG00000078503.10	ENSMUST00000105742.8	2996	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_2	195.188797492752	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGATTGTTTCCAAT	894	False	NA	NA	False	NA	NA	NA	145237328	145265758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_145237496_145257381_145257486_145261385_145261513_145263160
transcript_41235.nnic	chr4	+	2619	4	NNC	ENSMUSG00000078503.10	novel	2996	4	NA	NA	-2	-234	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	233.962960031426	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCCTTAAAAGAGTATCTG	924	False	NA	40	True	AATAAA	-16	NA	145237358	145265524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_145237383_145257381_145257486_145261385_145261513_145263160
transcript_41237.nnic	chr4	+	2998	4	NIC	ENSMUSG00000078503.10	novel	3044	5	NA	NA	-34	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_1	226.592634969061	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGATTGTTTCCAAT	4985	False	NA	NA	False	NA	NA	NA	145241419	145265758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_145241589_145257381_145257486_145261385_145261513_145263160
transcript_4124.known	chr10	+	4605	5	FSM	ENSMUSG00000023068.17	ENSMUST00000023830.16	4605	5	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_2	27.0370116691915	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACCTAGAATTTGAGTTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	52293642	52316279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_52294265_52305288_52305415_52306162_52306313_52309440_52309541_52312672
transcript_41243.nnic	chr4	+	1544	3	Fusion	ENSMUSG00000082352.2_ENSMUSG00000078503.10	novel	3044	5	NA	NA	-20	767	multi-exon	FALSE	non_canonical	0	0	junction_2	2	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTAGTATTGTTGTCCT	4999	False	NA	NA	False	AGTAAA	-10	NA	145241433	145302498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145241589_145301002_145301729_145301835
transcript_41246.nnic	chr4	+	1006	3	Genic_Genomic	ENSMUSG00000082352.2	novel	634	1	NA	NA	-9917	208	multi-exon	FALSE	non_canonical	0	0	junction_2	47	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GGAAAAGAAAGAGAAAATAA	7444	False	NA	NA	False	NA	NA	NA	145291180	145301939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr4_+_145291368_145301002_145301718_145301835
transcript_41247.nnic	chr4	+	1565	3	Genic_Genomic	ENSMUSG00000082352.2	novel	634	1	NA	NA	-9917	767	multi-exon	FALSE	non_canonical	0	0	junction_2	47	24	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTAGTATTGTTGTCCT	7444	False	NA	NA	False	AGTAAA	-10	NA	145291180	145302498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr4_+_145291368_145301002_145301718_145301835
transcript_41249.nnic	chr4	+	1576	3	Genic_Genomic	ENSMUSG00000082352.2	novel	634	1	NA	NA	-9917	767	multi-exon	FALSE	non_canonical	0	0	junction_2	47	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTAGTATTGTTGTCCT	7444	False	NA	NA	False	AGTAAA	-10	NA	145291180	145302498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr4_+_145291368_145301002_145301729_145301835
transcript_41251.nnic	chr4	+	978	2	Fusion	ENSMUSG00000082352.2_ENSMUSG00000078503.10	novel	3044	5	NA	NA	-20	94	multi-exon	FALSE	canonical	1	4	junction_1	0	61	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTAAGATTTGTTTTT	4999	False	NA	20	True	AAGAAA	-16	NA	145241433	145301825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145241589_145301002
transcript_41252.nnic	chr4	+	447	2	Genic_Genomic	ENSMUSG00000082352.2	novel	634	1	NA	NA	-9917	-469	multi-exon	FALSE	canonical	3	94	junction_1	0	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAGGAGAAATTTGAAGT	7444	False	NA	NA	False	NA	NA	NA	145291180	145301262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr4_+_145291368_145301002
transcript_41253.nnic	chr4	+	1010	2	Genic_Genomic	ENSMUSG00000082352.2	novel	634	1	NA	NA	-9917	94	multi-exon	FALSE	canonical	3	94	junction_1	0	85	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTAAGATTTGTTTTT	7444	False	NA	20	True	AAGAAA	-16	NA	145291180	145301825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr4_+_145291368_145301002
transcript_4126.known	chr10	+	1855	3	FSM	ENSMUSG00000112132.2	ENSMUST00000218737.2	1855	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	4.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCCGGCCTCTGGCTGTGT	5694	False	NA	NA	False	NA	NA	NA	53285977	53300368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_53286053_53297604_53297685_53298668
transcript_41264.nnic	chr4	+	2685	10	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-5	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	21.6287417372302	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	889	False	NA	NA	False	NA	NA	NA	145237323	145351906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145237496_145239546_145239640_145241457_145241589_145314001_145314095_145322185_145322195_145322279_145322345_145343687_145343746_145347127_145347255_145348721_145348860_145350107
transcript_4128.known	chr10	+	2201	4	FSM	ENSMUSG00000019857.8	ENSMUST00000020004.8	2201	4	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_3	57.7119282875444	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTTTGTCTAACTACA	1521	False	NA	NA	False	AATAAA	-35	NA	53473047	53485321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_53473395_53478443_53478560_53482204_53482382_53483760
transcript_413.known	chr1	-	2014	4	FSM	ENSMUSG00000079658.10	ENSMUST00000188641.7	2014	4	0	0	0	0	multi-exon	FALSE	canonical	3	1161	junction_3	673.864641864785	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATCAGCACTTGGTCTTTA	NA	False	NA	0	True	AATAAA	-23	NA	16727108	16711948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727045
transcript_41308.nnic	chr4	+	2400	8	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-2	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	20.3359538848849	36	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	924	False	NA	NA	False	NA	NA	NA	145237358	145351906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145237383_145239551_145239640_145295284_145295386_145322279_145322345_145343687_145343746_145347127_145347255_145348721_145348860_145350107
transcript_4131.nnic	chr10	-	652	3	NNC	ENSMUSG00000038122.10	novel	7240	33	NA	NA	-28	-69342	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	5	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTGGGTTCATGGCTCT	NA	False	NA	NA	False	NA	NA	NA	56104813	56099600	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_56099851_56100659_56100822_56104573
transcript_41310.nnic	chr4	+	2914	8	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	2498	5	NA	NA	-2	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	42.2572297883777	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	924	False	NA	NA	False	NA	NA	NA	145237358	145351906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145237416_145239545_145239640_145311773_145311905_145314001_145314095_145343687_145343746_145347127_145347255_145348721_145348876_145349706
transcript_41312.nnic	chr4	+	2409	8	NNC	ENSMUSG00000078502.11	novel	1221	3	NA	NA	-72184	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	20.3359538848849	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	3117	False	NA	NA	False	NA	NA	NA	145239551	145351906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_145239640_145269924_145269962_145299953_145300051_145322279_145322345_145343687_145343746_145347127_145347255_145348721_145348860_145350107
transcript_41317.nnic	chr4	+	2425	7	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-5	0	multi-exon	TRUE	non_canonical	0	0	junction_1	21.221058723196	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	889	False	NA	NA	False	NA	NA	NA	145237323	145351915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145237496_145239546_145239640_145343640_145343746_145347127_145347255_145348721_145349326_145350417_145351517_145351690
transcript_4132.known	chr10	+	2604	12	FSM	ENSMUSG00000019878.9	ENSMUST00000079833.6	2604	12	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_10	23.7006119808005	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATTCCTTCTCATTGTT	NA	False	NA	13	True	NA	NA	NA	57362491	57389231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_57362698_57371993_57372103_57372250_57372379_57373592_57373718_57375511_57375588_57377465_57377528_57378718_57378807_57380677_57380827_57381241_57381479_57382292_57382399_57387539_57387625_57387998
transcript_41321.nnic	chr4	+	2378	7	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-5	0	multi-exon	FALSE	non_canonical	0	0	junction_1	21.221058723196	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	889	False	NA	NA	False	NA	NA	NA	145237323	145351915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145237496_145239546_145239640_145343687_145343746_145347127_145347255_145348721_145349326_145350417_145351517_145351690
transcript_41335.nnic	chr4	+	2560	6	Fusion	ENSMUSG00000078503.10_ENSMUSG00000078502.11	novel	1221	3	NA	NA	-10	0	multi-exon	TRUE	canonical	0	0	junction_4	21.4513402844671	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	5009	False	NA	NA	False	NA	NA	NA	145241443	145351915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145241589_145343640_145343746_145347127_145347255_145348721_145349286_145349370_145350039_145350964
transcript_41346.nnic	chr4	+	1571	9	Fusion	ENSMUSG00000078502.11_ENSMUSG00000058186.14	novel	1938	3	NA	NA	-11	3476	multi-exon	FALSE	canonical	0	0	junction_5	147.134080008678	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	145311724	145434487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145312083_145314001_145314095_145319501_145319572_145399301_145399395_145406465_145406546_145419136_145419307_145422720_145422806_145425813_145425941_145433992
transcript_4135.known	chr10	-	2880	9	FSM	ENSMUSG00000019877.11	ENSMUST00000020027.11	2880	9	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_6	44.2279252848243	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTGGTGGTAGCATTACA	NA	False	NA	NA	False	AATAAA	-16	NA	57408626	57391869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_57393389_57395458_57395690_57395793_57395939_57399051_57399313_57400056_57400195_57400415_57400496_57401420_57401591_57403760_57403923_57408452
transcript_41351.nnic	chr4	+	1401	8	Fusion	ENSMUSG00000078502.11_ENSMUSG00000058186.14	novel	1938	3	NA	NA	-11	3476	multi-exon	FALSE	canonical	0	0	junction_7	152.773274722341	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	145311724	145434487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145312083_145314001_145314095_145319501_145319572_145399301_145399395_145406465_145406546_145422720_145422806_145425813_145425941_145433992
transcript_41354.nnic	chr4	+	1331	7	Fusion	ENSMUSG00000078502.11_ENSMUSG00000058186.14	novel	1938	3	NA	NA	-11	3476	multi-exon	FALSE	canonical	0	0	junction_2	167.320052593824	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	145311724	145434487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145312083_145314001_145314095_145399301_145399395_145406465_145406546_145422720_145422806_145425813_145425941_145433992
transcript_41364.nnic	chr4	+	715	5	Fusion	ENSMUSG00000078503.10_ENSMUSG00000058186.14	novel	1938	3	NA	NA	-20	-1478	multi-exon	FALSE	canonical	0	0	junction_2	212.74926556865	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGGGTCTTCTATCATT	4999	False	NA	NA	False	TATAAA	-17	NA	145241433	145427732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145241589_145314001_145314095_145422723_145422806_145425813_145425941_145427474
transcript_41365.nnic	chr4	+	818	5	Fusion	ENSMUSG00000078503.10_ENSMUSG00000058186.14	novel	1938	3	NA	NA	-20	-1375	multi-exon	FALSE	canonical	0	0	junction_2	212.74926556865	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAGTGAAATGAGCACTT	4999	False	NA	NA	False	AATAAA	-33	NA	145241433	145427835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145241589_145314001_145314095_145422723_145422806_145425813_145425941_145427474
transcript_41369.known	chr4	+	4006	5	FSM	ENSMUSG00000058186.14	ENSMUST00000105738.9	4006	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	173.168992605489	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	AATAAA	-19	NA	145397254	145431011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_145397419_145399301_145399395_145422720_145422806_145425813_145425941_145427474
transcript_41374.nnic	chr4	+	2635	3	NNC	ENSMUSG00000058186.14	novel	1938	3	NA	NA	5224	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	0	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	145427954	145431010	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_145428486_145428822_145429340_145429423
transcript_41376.nnic	chr4	+	338	3	Genic_Genomic	ENSMUSG00000094417.2	novel	565	1	NA	NA	-120	14245	multi-exon	FALSE	canonical	3	220	junction_1	12	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGAGTTCTTCTCTGGTA	NA	False	NA	NA	False	NA	NA	NA	145501168	145516098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr4_+_145501361_145510590_145510684_145516045
transcript_41382.nnic	chr4	+	849	8	Fusion	ENSMUSG00000078500.4_ENSMUSG00000094417.2_ENSMUSG00000084350.2	novel	2413	3	NA	NA	-136	-799	multi-exon	TRUE	non_canonical	0	0	junction_7	91.2905207766582	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	145501152	145625733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145501361_145510590_145510684_145516045_145516128_145541336_145541383_145551778_145551837_145552678_145552806_145554256_145554420_145625661
transcript_41397.nnic	chr4	+	767	7	Fusion	ENSMUSG00000078500.4_ENSMUSG00000094417.2_ENSMUSG00000084350.2	novel	2413	3	NA	NA	-136	-799	multi-exon	FALSE	non_canonical	0	0	junction_6	109.620050882836	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	145501152	145625733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145501361_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256_145554420_145625661
transcript_4140.known	chr10	+	1961	8	FSM	ENSMUSG00000019872.14	ENSMUST00000020022.8	1961	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.57790871674104	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGTTTGCCTTTGTTGT	NA	False	NA	NA	False	AATAAA	-30	NA	57670469	57687926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_57670881_57677006_57677221_57678515_57678661_57681662_57681760_57683450_57683621_57683972_57684154_57685141_57685267_57687308
transcript_41403.nnic	chr4	+	753	7	Fusion	ENSMUSG00000078500.4_ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43791	-799	multi-exon	FALSE	non_canonical	0	0	junction_6	161.611416675927	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	145508015	145625733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145508210_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256_145554420_145625661
transcript_41411.nnic	chr4	+	924	7	Fusion	ENSMUSG00000078500.4_ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43791	-799	multi-exon	FALSE	non_canonical	0	0	junction_6	112.739744544681	87	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	145508015	145625733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145508381_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256_145554420_145625661
transcript_41412.nnic	chr4	+	947	7	Fusion	ENSMUSG00000078500.4_ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43791	-799	multi-exon	FALSE	non_canonical	0	0	junction_6	112.83567205848	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	145508015	145625733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145508381_145510590_145510684_145541336_145541406_145551778_145551837_145552678_145552806_145554256_145554420_145625661
transcript_41414.nnic	chr4	+	968	7	Fusion	ENSMUSG00000078500.4_ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43791	-799	multi-exon	FALSE	non_canonical	0	0	junction_6	99.3120782628623	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	145508015	145625733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145508425_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256_145554420_145625661
transcript_4142.nic	chr10	+	948	6	ISM	ENSMUSG00000038039.14	ENSMUST00000057659.14	6547	23	-78	35855	-78	281	5prime_fragment	FALSE	canonical	3	81	junction_2	9.76524449258696	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAATAAATAAACTAAAAGA	NA	False	NA	NA	False	AATAGA	-26	NA	58091240	58105566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_58091394_58091650_58091705_58092641_58092727_58094062_58094131_58103788_58103894_58105083
transcript_41422.nnic	chr4	+	767	6	Fusion	ENSMUSG00000094417.2_ENSMUSG00000084350.2	novel	2413	3	NA	NA	-136	-2021	multi-exon	FALSE	canonical	2	3	junction_4	108.584713472938	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	145501152	145554491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_145501361_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256
transcript_41425.nnic	chr4	+	753	6	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43791	-2021	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	163.313930820368	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	145508015	145554491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_145508210_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256
transcript_4143.known	chr10	+	4327	10	FSM	ENSMUSG00000019920.19	ENSMUST00000020078.14	4327	10	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	23.8875968642854	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTACATATCATTTAG	NA	False	NA	10	True	AATAAA	-19	NA	58159287	58260513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_58159510_58234842_58235003_58243891_58243959_58245381_58245503_58245874_58246025_58248224_58248376_58249794_58249888_58252455_58252505_58254220_58254297_58257275
transcript_41431.nnic	chr4	+	968	6	NNC	ENSMUSG00000084350.2	novel	2413	3	NA	NA	-43791	-2021	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	99.0898582096069	20	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	145508015	145554491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_145508425_145510590_145510684_145541336_145541383_145551778_145551837_145552678_145552806_145554256
transcript_41450.nnic	chr4	+	2070	7	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	13	256529	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	79.3804132012425	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAACAAGTTTGCTTTGG	NA	False	NA	NA	False	NA	NA	NA	146033927	146319720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146033945_146036308_146036316_146058453_146058581_146060726_146060881_146061213_146061939_146062358_146063091_146319412
transcript_4146.known	chr10	+	4351	10	FSM	ENSMUSG00000019920.19	ENSMUST00000238939.2	4351	10	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	82.3939647795806	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTACATATCATTTAG	NA	False	NA	10	True	AATAAA	-19	NA	58207275	58260513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_58207522_58234842_58235003_58243891_58243959_58245381_58245503_58245874_58246025_58248224_58248376_58249794_58249888_58252455_58252505_58254220_58254297_58257275
transcript_41460.nnic	chr4	+	2736	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-56	3	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	82.8322853723112	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033811	146063194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726_146061347_146061514
transcript_41461.nnic	chr4	+	2735	5	NNC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-56	3	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	82.8322853723112	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033811	146063194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726_146061381_146061549
transcript_41466.known	chr4	+	2798	4	FSM	ENSMUSG00000066009.9	ENSMUST00000091878.6	2798	4	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_2	56.5115524079418	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTTGGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	146033914	146063191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_146034017_146054375_146054480_146058453_146058581_146060726
transcript_41470.nnic	chr4	+	2777	3	NIC	ENSMUSG00000066009.9	novel	2798	4	NA	NA	-56	3	combination_of_known_splicesites	FALSE	canonical	3	72	junction_2	50	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTTCAA	NA	False	NA	NA	False	NA	NA	NA	146033811	146063194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_146034017_146054375_146054480_146060726
transcript_41472.known	chr4	+	266	2	FSM	ENSMUSG00000066009.9	ENSMUST00000154939.2	266	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	146033867	146035167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_146034017_146035050
transcript_41474.nnic	chr4	+	3708	8	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	-56	-1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	173.875512587457	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	146093337	146135324	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146093548_146094927_146095022_146102109_146102186_146126781_146126867_146129876_146130004_146131535_146132094_146132514_146133333_146133584
transcript_41475.nnic	chr4	+	3705	8	NNC	ENSMUSG00000066007.16	novel	4244	5	NA	NA	-56	-1	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	173.951318547718	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGACTTGGCTGTTTTCA	NA	False	NA	NA	False	AATAAA	-18	NA	146093337	146135324	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146093548_146094927_146095022_146102109_146102186_146126784_146126867_146129876_146130004_146131535_146132094_146132514_146133333_146133584
transcript_4148.nic	chr10	+	1456	2	ISM	ENSMUSG00000019920.19	ENSMUST00000020078.14	4327	10	66	24371	66	-10016	5prime_fragment	FALSE	canonical	3	317	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTTCCATTTGTGAATTG	NA	False	NA	NA	False	AAAACA	-41	NA	58159353	58236142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_58159510_58234842
transcript_41483.known	chr4	+	4244	5	FSM	ENSMUSG00000066007.16	ENSMUST00000168483.9	4244	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	207.21064161862	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAAGGTTGACTTGGCTGT	NA	False	NA	NA	False	AATAAA	-13	NA	146093393	146135319	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_146093548_146094927_146095022_146126781_146126867_146129876_146130004_146131535
transcript_41488.nnic	chr4	+	836	7	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	-44	38389	at_least_one_novel_splicesite	TRUE	canonical	2	3	junction_5	153.60302369709	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206856	146253393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146207052_146209452_146209546_146214922_146215005_146240246_146240293_146250678_146250737_146251579_146251707_146253158
transcript_4149.nic	chr10	+	875	5	ISM	ENSMUSG00000003226.8	ENSMUST00000219332.2	2609	6	-59	3430	-59	-3430	5prime_fragment	FALSE	canonical	3	167	junction_4	13.9283882771841	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGGTGTGGATCTTTCTGT	NA	False	NA	NA	False	AATAAA	-14	NA	58282682	58291391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_58282874_58287805_58287874_58289133_58289246_58290394_58290548_58291040
transcript_41493.nnic	chr4	+	790	6	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	-44	38389	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_4	167.233489469065	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206856	146253393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146207052_146209452_146209546_146214922_146215005_146250678_146250737_146251579_146251707_146253158
transcript_415.known	chr1	-	641	4	FSM	ENSMUSG00000079658.10	ENSMUST00000186948.7	641	4	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	1146.38165062465	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAGAGTTGAAATTTGTTT	NA	False	NA	-82	True	NA	NA	NA	16727242	16713365	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727135
transcript_4150.known	chr10	+	2455	16	FSM	ENSMUSG00000038010.10	ENSMUST00000036576.10	2455	16	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_12	10.0598210719674	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTAGAGTCCCTTCTTT	943	False	NA	NA	False	AATAAA	-24	NA	58333769	58412066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_58333885_58334990_58335036_58335183_58335242_58343342_58343464_58345326_58345455_58348900_58349080_58359959_58360119_58363163_58363284_58364144_58364223_58364726_58364835_58374070_58374233_58376619_58376737_58380738_58380932_58397722_58397900_58409410_58409550_58411510
transcript_41502.nnic	chr4	+	873	5	NNC	ENSMUSG00000085525.8	novel	314	3	NA	NA	6	38389	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	56.9912273951	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	146206906	146253393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146207267_146209452_146209546_146250678_146250737_146251579_146251707_146253158
transcript_41504.nnic	chr4	+	332	3	NNC	ENSMUSG00000085525.8	novel	280	2	NA	NA	-6785	0	at_least_one_novel_splicesite	FALSE	canonical	3	141	junction_1	56	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTGCTGTTCACATT	NA	False	NA	33	True	NA	NA	NA	146200115	146215004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146200273_146209452_146209546_146214922
transcript_41505.known	chr4	+	282	3	FSM	ENSMUSG00000085525.8	ENSMUST00000124975.2	282	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	186	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTGCTGTTCACATT	NA	False	NA	33	True	NA	NA	NA	146206941	146215004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_146207052_146209452_146209546_146214925
transcript_41506.nnic	chr4	+	520	3	NNC	ENSMUSG00000085525.8	novel	326	3	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	3	242	junction_1	5.5	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGTGCTGTTCACATT	NA	False	NA	33	True	NA	NA	NA	146206877	146215004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146207223_146209452_146209546_146214922
transcript_41508.nic	chr4	+	288	2	ISM	ENSMUSG00000085525.8	ENSMUST00000146671.8	314	3	-44	5403	-44	0	5prime_fragment	FALSE	canonical	3	439	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGTTAGAGGTATTGAAC	NA	False	NA	NA	False	NA	NA	NA	146206856	146209545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_146207052_146209452
transcript_4152.nic	chr10	+	1878	12	ISM	ENSMUSG00000038010.10	ENSMUST00000036576.10	2455	16	-54	34896	-54	-34896	5prime_fragment	FALSE	canonical	3	46	junction_9	6.71497647731614	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CAAAACAAAACAAAACAAAA	889	False	NA	NA	False	NA	NA	NA	58333715	58377170	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_58333885_58334990_58335036_58335183_58335242_58343342_58343464_58345326_58345455_58348900_58349080_58359959_58360119_58363163_58363284_58364144_58364223_58364726_58364835_58374070_58374233_58376619
transcript_4153.nic	chr10	+	2173	12	ISM	ENSMUSG00000038010.10	ENSMUST00000036576.10	2455	16	-54	34601	-54	-34601	5prime_fragment	FALSE	canonical	3	46	junction_9	6.71497647731614	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTCCTTTAGATCTTCACC	889	False	NA	NA	False	NA	NA	NA	58333715	58377465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_58333885_58334990_58335036_58335183_58335242_58343342_58343464_58345326_58345455_58348900_58349080_58359959_58360119_58363163_58363284_58364144_58364223_58364726_58364835_58374070_58374233_58376619
transcript_4156.nic	chr10	+	888	4	NIC	ENSMUSG00000038010.10	novel	2455	16	NA	NA	-54	-1560	combination_of_known_junctions	FALSE	canonical	2	3	junction_3	29.5108266385218	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	889	False	NA	NA	False	NA	NA	NA	58333715	58336634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_58333885_58334990_58335036_58335183_58335242_58336018
transcript_4159.known	chr10	-	2532	10	FSM	ENSMUSG00000019917.11	ENSMUST00000165971.3	2532	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	10.8639169436269	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAATCTATGTATTTCCTAA	NA	False	NA	-29	True	AATAAA	-15	NA	59057669	58999941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_59000767_59002325_59002514_59006635_59006769_59012669_59012839_59014582_59014680_59016841_59017004_59019346_59019534_59027987_59028184_59028519_59028638_59057212
transcript_416.known	chr1	-	960	4	FSM	ENSMUSG00000079658.10	ENSMUST00000115352.10	960	4	0	0	0	0	multi-exon	TRUE	canonical	3	1066	junction_3	717.825574603995	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTTGTGTTTTGTTTATT	NA	False	NA	-2	True	TATAAA	-20	NA	16727266	16712990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16727215
transcript_41600.nnic	chr4	+	648	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16676	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	291.29827926028	733	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1818	False	NA	NA	False	AATACA	-2	NA	146516803	146550672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146516986_146533486_146533533_146547961_146548020_146548860_146548988_146550437
transcript_41603.nnic	chr4	+	671	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16676	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_3	299.080674735095	283	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1818	False	NA	NA	False	AATACA	-2	NA	146516803	146550672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146516986_146533486_146533556_146547961_146548020_146548860_146548988_146550437
transcript_41605.nnic	chr4	+	661	5	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16645	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	318.789115247055	73	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1849	False	NA	NA	False	AATACA	-2	NA	146516834	146550672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146517030_146533486_146533533_146547961_146548020_146548860_146548988_146550437
transcript_4161.known	chr10	+	4043	15	FSM	ENSMUSG00000019916.15	ENSMUST00000009789.15	4043	15	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_8	56.7996838163088	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCTATGTACAACTGTTT	NA	False	NA	NA	False	AATACA	-40	NA	59159117	59209126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59184002_59184243_59186225_59186423_59187904_59188082_59190161_59190233_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
transcript_41613.nnic	chr4	+	598	4	NNC	ENSMUSG00000070605.5	novel	4550	4	NA	NA	-16672	-4077	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	367.768949205884	80	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	1822	False	NA	NA	False	AATACA	-2	NA	146516807	146550672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146516986_146547961_146548020_146548860_146548988_146550437
transcript_4162.known	chr10	+	2918	15	FSM	ENSMUSG00000019916.15	ENSMUST00000105466.3	2918	15	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_7	20.6288880070682	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACGGGGCTCCGGCTCATT	NA	False	NA	NA	False	NA	NA	NA	59159189	59208073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_59159299_59172875_59172979_59175117_59175215_59178505_59178658_59179478_59179617_59184002_59184243_59186225_59186423_59187904_59188082_59191171_59191243_59197682_59197783_59201110_59201165_59203110_59203177_59205062_59205132_59205408_59205506_59206825
transcript_41626.nnic	chr4	+	1034	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-297113	3413	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	149.231900075017	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	2312	False	NA	NA	False	NA	NA	NA	146289370	146627265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146289526_146597241_146597335_146603534_146603615_146616526_146616611_146619877_146620005_146626770
transcript_41628.nnic	chr4	+	1067	6	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-63	3413	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	156.85228720041	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146586420	146627265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146586609_146597241_146597335_146603534_146603615_146616526_146616611_146619877_146620005_146626770
transcript_41631.nnic	chr4	+	954	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-297113	3413	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_4	148.132542002087	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	2312	False	NA	NA	False	NA	NA	NA	146289370	146627265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146289526_146597241_146597335_146616526_146616611_146619877_146620005_146626770
transcript_41632.known	chr4	+	3038	5	FSM	ENSMUSG00000056300.15	ENSMUST00000105735.9	3038	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_2	129.101462036648	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	NA	False	NA	NA	False	NA	NA	NA	146586483	146623849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_146586602_146597241_146597335_146616526_146616611_146619877_146620005_146621233
transcript_41634.nnic	chr4	+	987	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-63	3413	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	167.298199332808	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146586420	146627265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146586609_146597241_146597335_146616526_146616611_146619877_146620005_146626770
transcript_41636.nnic	chr4	+	932	5	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-12	3413	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	170.557908054713	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146586471	146627265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146586602_146616529_146616611_146619877_146620005_146621233_146621333_146626770
transcript_41638.nic	chr4	+	604	4	ISM	ENSMUSG00000056300.15	ENSMUST00000105735.9	3038	5	-87	3750	-87	-1378	5prime_fragment	FALSE	canonical	3	87	junction_2	147.156001878581	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGGTCTCTGTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	146586396	146620099	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_146586602_146597241_146597335_146616526_146616611_146619877
transcript_41639.nic	chr4	+	697	4	ISM	ENSMUSG00000056300.15	ENSMUST00000105735.9	3038	5	-27	3597	-27	-1225	5prime_fragment	FALSE	canonical	3	87	junction_2	147.156001878581	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTAACTTTAAAATTAGAG	NA	False	NA	NA	False	AATAAA	-19	NA	146586456	146620252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_146586602_146597241_146597335_146616526_146616611_146619877
transcript_4164.known	chr10	+	1091	4	FSM	ENSMUSG00000009646.14	ENSMUST00000009790.14	1091	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAGATGAATGAATTCCAT	9407	False	NA	NA	False	AATAAA	-24	NA	59239481	59257798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_59239804_59246798_59246888_59252169_59252336_59257284
transcript_41640.nnic	chr4	+	833	4	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-12	3413	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_1	189.429553015245	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGATATTCTGATCTTTTT	NA	False	NA	NA	False	NA	NA	NA	146586471	146627265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146586602_146616529_146616611_146619877_146620005_146626770
transcript_41641.known	chr4	+	2953	4	FSM	ENSMUSG00000056300.15	ENSMUST00000179175.3	2953	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	159.826989794173	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGGCTGTTTTCAGTTT	NA	False	NA	NA	False	NA	NA	NA	146599376	146623852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_146599500_146616526_146616611_146619877_146620005_146621233
transcript_41643.nic	chr4	+	610	3	ISM	ENSMUSG00000056300.15	ENSMUST00000140089.7	578	4	-28	1225	-28	-1225	5prime_fragment	FALSE	canonical	3	35	junction_1	192.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGTAACTTTAAAATTAGAG	NA	False	NA	NA	False	AATAAA	-19	NA	146599348	146620252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_146599500_146616526_146616611_146619877
transcript_41644.nnic	chr4	+	353	2	NNC	ENSMUSG00000056300.15	novel	3038	5	NA	NA	-84	-34136	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGACCCTGAGAAGAAAAT	NA	False	NA	NA	False	TATAAA	-38	NA	146586399	146587341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146586602_146587190
transcript_41648.nnic	chr4	+	831	7	NNC	ENSMUSG00000063245.12	novel	387	3	NA	NA	-195239	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_5	127.123846001536	33	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAATGACTCTGTAAACAG	NA	False	NA	NA	False	AAAAAG	-35	NA	146500178	146742064	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146500373_146697966_146698060_146703608_146703692_146728915_146728962_146739355_146739414_146740256_146740384_146741834
transcript_4166.known	chr10	+	2442	12	FSM	ENSMUSG00000020111.16	ENSMUST00000165563.8	2442	12	0	0	0	0	multi-exon	FALSE	canonical	2	105	junction_7	32.1836157690049	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTCTGTGTCCTTTCTTT	NA	False	NA	27	True	NA	NA	NA	59538298	59699954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_59538510_59563778_59563941_59568804_59568980_59576481_59576645_59586325_59586370_59603959_59604075_59623762_59623846_59624700_59624899_59663010_59663149_59675496_59675606_59697384_59697475_59699000
transcript_41661.nnic	chr4	+	341	3	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-195239	-38402	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_2	136	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGAGTTCTTCTCTGGTA	NA	False	NA	NA	False	NA	NA	NA	146500178	146703662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146500373_146697966_146698060_146703608
transcript_41663.nnic	chr4	+	557	3	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-27	-38402	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_2	9	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGAGTTCTTCTCTGGTA	NA	False	NA	NA	False	NA	NA	NA	146695390	146703662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146695801_146697966_146698060_146703608
transcript_41664.nnic	chr4	+	499	3	NNC	ENSMUSG00000063245.12	novel	1275	6	NA	NA	-13	-38402	at_least_one_novel_splicesite	FALSE	canonical	3	119	junction_2	52.5	67	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGAGTTCTTCTCTGGTA	NA	False	NA	NA	False	NA	NA	NA	146695404	146703662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_146695757_146697966_146698060_146703608
transcript_41676.nnic	chr4	-	2652	8	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	-25	63800	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	110.834128686216	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994072	146912352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_146913192_146913275_146913622_146914378_146914412_146976203_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993875
transcript_41677.nnic	chr4	-	2774	8	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	0	63800	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	104.250287524685	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994047	146912352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_146913219_146913722_146913808_146913975_146914389_146976181_146977116_146978205_146978333_146982168_146982273_146983728_146983809_146993882
transcript_41686.nnic	chr4	-	3072	7	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	-25	63800	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	116.201572947855	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994072	146912352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_146913241_146913577_146914284_146976159_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993875
transcript_41688.nnic	chr4	-	3073	7	NNC	ENSMUSG00000045699.5	novel	750	5	NA	NA	-25	63800	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	116.201572947855	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	146994072	146912352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_146913320_146913739_146914368_146976159_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993875
transcript_41689.nnic	chr4	-	3143	7	NNC	ENSMUSG00000045699.5	novel	1296	4	NA	NA	-21	63724	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	118.367600672181	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAATAAAACTGGTAGCATT	NA	False	NA	NA	False	AATACA	-14	NA	146994068	146912428	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_146913276_146913359_146913958_146914042_146914368_146976159_146977116_146978205_146978333_146982168_146982273_146993882
transcript_41692.nnic	chr4	-	670	5	NNC	ENSMUSG00000045699.5	novel	1296	4	NA	NA	-21	61501	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	109.527393833689	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTTTGTTTTCTACCATT	NA	False	NA	NA	False	AATACA	-19	NA	146994068	146914651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_146914767_146976977_146977116_146978205_146978333_146982168_146982273_146993882
transcript_41693.known	chr4	-	750	5	FSM	ENSMUSG00000045699.5	ENSMUST00000049821.4	750	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	126.107840755442	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTTGTTTTCTACCATTA	NA	False	NA	-2	True	AATACA	-20	NA	146994047	146976862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_146977116_146978205_146978333_146982168_146982273_146991977_146992072_146993875
transcript_41695.known	chr4	-	1296	4	FSM	ENSMUSG00000045699.5	ENSMUST00000238583.2	1296	4	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	62.9938268580519	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	NNNNNNNNNNNNNNNNNNNN	NA	False	NA	NA	False	NA	NA	NA	146993984	146976152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_146977116_146978205_146978333_146982168_146982273_146993882
transcript_417.known	chr1	-	534	4	FSM	ENSMUSG00000079658.10	ENSMUST00000186701.2	534	4	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	1176.35397167123	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTGAGAATGAAACCAACG	NA	False	NA	NA	False	TATAAA	-25	NA	16726849	16713695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_16713703_16715909_16716054_16718178_16718232_16726519
transcript_41703.known	chr4	+	2295	5	FSM	ENSMUSG00000086147.3	ENSMUST00000146688.3	2295	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	133.103343308874	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTGTATGTGACAAATACAA	NA	False	NA	NA	False	NA	NA	NA	147056432	147075212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_147056575_147058404_147058498_147067150_147067255_147071090_147071218_147073383
transcript_41704.nnic	chr4	+	2741	5	NNC	ENSMUSG00000086147.3	novel	2295	5	NA	NA	-70	722	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	16.5586080332859	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147056362	147075934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_147056575_147067150_147067255_147071090_147071218_147073383_147074794_147075046
transcript_41714.nnic	chr4	+	956	6	Fusion	ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-66	-3182	multi-exon	FALSE	canonical	3	31	junction_2	173.275503173415	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACAAAACAATAGTGAAATG	NA	False	NA	NA	False	AATAAA	-26	NA	147056366	147142069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_147056575_147058404_147058498_147115003_147115080_147136962_147137048_147140042_147140183_147141715
transcript_41715.nnic	chr4	+	847	6	Fusion	ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-66	-3278	multi-exon	FALSE	canonical	3	31	junction_2	217.040088462938	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGGGTCTTCTATCATT	NA	False	NA	NA	False	TATAAA	-17	NA	147056366	147141973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_147056575_147058404_147058498_147115003_147115080_147136962_147137048_147140055_147140183_147141715
transcript_41716.nnic	chr4	+	943	6	Fusion	ENSMUSG00000067919.9_ENSMUSG00000086147.3	novel	2295	5	NA	NA	-66	-3182	multi-exon	FALSE	canonical	3	31	junction_2	217.040088462938	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACAAAACAATAGTGAAATG	NA	False	NA	NA	False	AATAAA	-26	NA	147056366	147142069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_147056575_147058404_147058498_147115003_147115080_147136962_147137048_147140055_147140183_147141715
transcript_41720.nnic	chr4	+	756	6	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	-46108	-3278	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	257.798836304588	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGGGTCTTCTATCATT	NA	False	NA	NA	False	TATAAA	-17	NA	147060198	147141973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_147060315_147107818_147107913_147115003_147115080_147136962_147137048_147140055_147140183_147141715
transcript_41723.nnic	chr4	+	3457	6	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	-9	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	277.666994797725	60	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	2302	False	NA	NA	False	AATAAA	-19	NA	147106325	147145251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_147106458_147136965_147137048_147140055_147140183_147141715_147142355_147142438_147143583_147143918
transcript_41729.nnic	chr4	+	680	5	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	-46108	-3278	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	284.017935173115	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGGGTCTTCTATCATT	NA	False	NA	NA	False	TATAAA	-17	NA	147060198	147141973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_147060315_147107818_147107913_147136962_147137048_147140055_147140183_147141715
transcript_4173.known	chr10	+	3041	9	FSM	ENSMUSG00000020109.14	ENSMUST00000147914.8	3041	9	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_8	46.5154544210846	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGGTCTGCATTGAAC	NA	False	NA	37	True	NA	NA	NA	59715377	59735124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732270_59733312
transcript_41730.nnic	chr4	+	776	5	NNC	ENSMUSG00000067919.9	novel	3993	5	NA	NA	-46108	-3182	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	284.017935173115	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GACAAAACAATAGTGAAATG	NA	False	NA	NA	False	AATAAA	-26	NA	147060198	147142069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_147060315_147107818_147107913_147136962_147137048_147140055_147140183_147141715
transcript_41732.known	chr4	+	3993	5	FSM	ENSMUSG00000067919.9	ENSMUST00000075775.6	3993	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	279.904894562421	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGACTTGGCTGTTTTCAG	2283	False	NA	NA	False	AATAAA	-19	NA	147106306	147145251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_147106458_147107818_147107913_147136962_147137048_147140055_147140183_147141715
transcript_41736.nnic	chr4	+	782	8	Fusion	ENSMUSG00000067919.9_ENSMUSG00000067916.10_ENSMUSG00000086147.3	novel	3993	5	NA	NA	-5	1787	multi-exon	TRUE	canonical	0	0	junction_1	29.5828135433879	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	147056427	147263016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_147056482_147106370_147106458_147219028_147219122_147224494_147224577_147249797_147249844_147260303_147260362_147261203_147261331_147262781
transcript_41740.nnic	chr4	+	736	7	Fusion	ENSMUSG00000067919.9_ENSMUSG00000067916.10_ENSMUSG00000086147.3	novel	3993	5	NA	NA	-5	1787	multi-exon	FALSE	canonical	0	0	junction_1	32.0555074137902	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	147056427	147263016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_147056482_147106370_147106458_147219028_147219122_147224494_147224577_147260303_147260362_147261203_147261331_147262781
transcript_41741.nnic	chr4	+	700	7	Fusion	ENSMUSG00000067919.9_ENSMUSG00000067916.10_ENSMUSG00000086147.3	novel	3993	5	NA	NA	-5	1787	multi-exon	FALSE	canonical	0	0	junction_1	32.323452098369	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	147056427	147263016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_147056482_147106370_147106458_147219028_147219122_147249797_147249844_147260303_147260362_147261203_147261331_147262781
transcript_41745.nnic	chr4	+	612	5	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-1818	1787	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	34.022051672408	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	2764	False	NA	NA	False	AATACA	-2	NA	147233132	147263016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_147233279_147249797_147249844_147260303_147260362_147261203_147261331_147262781
transcript_41746.nnic	chr4	+	3815	5	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-1818	1183	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	34.022051672408	15	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTCCATCCGCTACGGC	2764	False	NA	NA	False	NA	NA	NA	147233132	147266219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_147233279_147249797_147249844_147260303_147260362_147261203_147261331_147262781
transcript_41747.nnic	chr4	+	572	4	Fusion	ENSMUSG00000082779.2_ENSMUSG00000067916.10	novel	454	2	NA	NA	-80	1787	multi-exon	FALSE	canonical	0	0	junction_1	41.4916323558806	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACTCTGTAAACAGTTTAA	NA	False	NA	NA	False	AATACA	-2	NA	147209632	147263016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_147209785_147260303_147260362_147261203_147261331_147262781
transcript_41748.nnic	chr4	+	1240	4	NNC	ENSMUSG00000067916.10	novel	2813	7	NA	NA	-15	22898	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	99.9911107160143	179	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAGGAAAAGAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	147216479	147287934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_147216647_147219028_147219122_147224494_147224577_147287036
transcript_4175.known	chr10	+	2238	9	FSM	ENSMUSG00000020109.14	ENSMUST00000020309.7	2238	9	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_8	81.8458917722814	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTGCGCACCAAGGACTC	NA	False	NA	NA	False	NA	NA	NA	59715447	59734343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732318_59733312
transcript_4177.known	chr10	+	3070	9	FSM	ENSMUSG00000020109.14	ENSMUST00000146590.8	3070	9	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_8	64.4659551623956	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCAGTGGTGGGTCTGCA	NA	False	NA	31	True	NA	NA	NA	59715396	59735118	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171_59732324_59733312
transcript_41778.nnic	chr4	+	2975	5	Fusion	ENSMUSG00000087207.9_ENSMUSG00000078498.6	novel	585	4	NA	NA	-45	0	multi-exon	FALSE	non_canonical	0	0	junction_1	76.333151382607	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	4065	False	NA	NA	False	NA	NA	NA	147314695	147418191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_147314893_147393100_147393181_147409230_147409335_147413438_147413566_147415724
transcript_41781.nnic	chr4	+	2785	5	NNC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-70	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	73.8562793538911	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147390060	147418191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_147390233_147409230_147409335_147413438_147413566_147415724_147417219_147417303
transcript_41788.known	chr4	+	2800	4	FSM	ENSMUSG00000078498.6	ENSMUST00000148762.4	2800	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	71.5976411777806	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147390130	147418191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_147390233_147409230_147409335_147413438_147413566_147415724
transcript_4179.known	chr10	+	1495	8	FSM	ENSMUSG00000020109.14	ENSMUST00000142819.8	1495	8	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_6	22.8937207325413	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCAAGCCTGGCTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	59715439	59732597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_59715633_59725849_59726031_59726661_59726808_59728493_59728680_59728759_59728840_59730052_59730163_59731409_59731583_59732171
transcript_41790.nnic	chr4	+	2743	3	NIC	ENSMUSG00000078498.6	novel	2800	4	NA	NA	-70	0	combination_of_known_splicesites	FALSE	canonical	2	12	junction_1	22.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147390060	147418191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_147390233_147409230_147409335_147415724
transcript_41792.nnic	chr4	+	721	6	Fusion	ENSMUSG00000067919.9_ENSMUSG00000086147.3_ENSMUSG00000078497.10	novel	2295	5	NA	NA	-16	168	multi-exon	TRUE	non_canonical	0	0	junction_4	252.435021342127	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGGGTCTTCTATCATT	NA	False	NA	2	True	TATAAA	-17	NA	147056416	147474914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_147056575_147058404_147058498_147136962_147137048_147140055_147140118_147261265_147261331_147474656
transcript_41794.known	chr4	+	1250	5	FSM	ENSMUSG00000078497.10	ENSMUST00000154154.2	1250	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	206.815739246316	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGGAGAGAAACCTTACAAAT	2377	False	NA	NA	False	NA	NA	NA	147445767	147475461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_147445910_147447267_147447362_147469676_147469759_147472778_147472906_147474656
transcript_41800.known	chr4	+	572	5	FSM	ENSMUSG00000078497.10	ENSMUST00000133078.8	572	5	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	194.465292533141	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGTCTTTTAAATGTAAT	2369	False	NA	NA	False	NA	NA	NA	147445759	147474746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_147445939_147447267_147447362_147469676_147469759_147472778_147472906_147474656
transcript_41809.nnic	chr4	+	3029	8	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-43225	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	124.272084638539	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	8	True	NA	NA	NA	147533648	147600521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_147533656_147576878_147577009_147592042_147592098_147595209_147595337_147596801_147597378_147597546_147597995_147598082_147598301_147599053
transcript_4181.known	chr10	-	1755	3	FSM	ENSMUSG00000020108.5	ENSMUST00000020308.5	1755	3	0	0	0	0	multi-exon	FALSE	canonical	3	721	junction_1	4.5	482	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGTCTCATCGGCGCCA	NA	False	NA	-4	True	AATAAA	-17	NA	59787656	59785490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_59786852_59787138_59787395_59787518
transcript_4182.known	chr10	+	1450	11	FSM	ENSMUSG00000044475.15	ENSMUST00000050516.14	1450	11	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_7	12.5797456254091	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTGTGGTCTGTGCA	NA	False	NA	26	True	AATAAA	-16	NA	59838660	59935808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_59838730_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
transcript_41832.nnic	chr4	+	3506	6	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-43269	2578	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	127.559554718571	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTTGCTTTGGTTGTTT	NA	False	NA	8	True	NA	NA	NA	147533604	147600521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_147533786_147536170_147536264_147592042_147592098_147595209_147595337_147596801_147597042_147597711
transcript_41848.nnic	chr4	+	598	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-43225	-844	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	133.478462682187	28	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATGCAGTGAATGTGACA	NA	False	NA	13	True	NA	NA	NA	147533648	147597033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_147533656_147576878_147577009_147591995_147592098_147595209_147595337_147596801
transcript_41849.nnic	chr4	+	551	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-43225	-844	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	124.355086345513	66	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATGCAGTGAATGTGACA	NA	False	NA	13	True	NA	NA	NA	147533648	147597033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_147533656_147576878_147577009_147592042_147592098_147595209_147595337_147596801
transcript_4185.known	chr10	+	1473	11	FSM	ENSMUSG00000044475.15	ENSMUST00000164083.4	1473	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	64.3808201252516	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTGTGGTCTGTGCACG	NA	False	NA	28	True	AATAAA	-18	NA	59839148	59935810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_59839239_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
transcript_41853.nnic	chr4	+	697	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-7	-844	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	123.241632576009	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATGCAGTGAATGTGACA	NA	False	NA	13	True	NA	NA	NA	147576866	147597033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_147577009_147578832_147578927_147591995_147592098_147595209_147595337_147596801
transcript_41854.nnic	chr4	+	650	5	NNC	ENSMUSG00000078496.10	novel	1488	4	NA	NA	-7	-844	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	123.241632576009	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATGCAGTGAATGTGACA	NA	False	NA	13	True	NA	NA	NA	147576866	147597033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_147577009_147578832_147578927_147592042_147592098_147595209_147595337_147596801
transcript_41856.nnic	chr4	+	592	4	NNC	ENSMUSG00000078496.10	novel	1244	3	NA	NA	-181905	-844	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	137.652541648246	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATGCAGTGAATGTGACA	NA	False	NA	13	True	NA	NA	NA	147394968	147597033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_147395147_147592042_147592098_147595209_147595337_147596801
transcript_4188.nnic	chr10	+	1386	10	NIC	ENSMUSG00000044475.15	novel	1450	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	18	junction_3	69.3265666213622	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTGTGGTCTGTGCA	NA	False	NA	26	True	AATAAA	-16	NA	59838626	59935808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_59838730_59840616_59840750_59843548_59843649_59849417_59849597_59877942_59878080_59885573_59885694_59898281_59898407_59900144_59900231_59933914_59934037_59935527
transcript_41884.nnic	chr4	+	2550	8	Fusion	ENSMUSG00000065999.14_ENSMUSG00000082779.2	novel	454	2	NA	NA	-87	-5	multi-exon	FALSE	non_canonical	0	0	junction_3	45.3494369157041	32	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147209625	147669650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_147209785_147447267_147447362_147536170_147536264_147581613_147581681_147661528_147661587_147665698_147665826_147667290_147667431_147667838
transcript_41888.nnic	chr4	+	2827	8	Fusion	ENSMUSG00000065999.14_ENSMUSG00000067916.10	novel	2762	6	NA	NA	-20	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	37.3199076928666	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216474	147669650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_147216818_147217303_147217441_147578832_147578926_147637751_147637884_147639766_147639810_147665698_147665826_147667290_147667431_147667838
transcript_41898.nnic	chr4	+	2483	7	Fusion	ENSMUSG00000065999.14_ENSMUSG00000082779.2	novel	454	2	NA	NA	-87	-5	multi-exon	FALSE	non_canonical	0	0	junction_6	44.0545747403781	31	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147209625	147669650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_147209785_147447267_147447362_147536170_147536264_147661528_147661587_147665698_147665826_147667290_147667431_147667838
transcript_41901.nnic	chr4	+	2536	7	Fusion	ENSMUSG00000065999.14_ENSMUSG00000067916.10	novel	2762	6	NA	NA	-20	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	37.6404776212465	38	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216474	147669650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_147216647_147534439_147534577_147578832_147578926_147637751_147637807_147665698_147665826_147667290_147667431_147667838
transcript_41903.nnic	chr4	+	2525	7	Fusion	ENSMUSG00000065999.14_ENSMUSG00000067916.10	novel	2813	7	NA	NA	-20	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	37.6404776212465	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216474	147669650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_147216647_147534439_147534577_147578832_147578927_147639766_147639810_147665698_147665826_147667290_147667431_147667838
transcript_41911.nnic	chr4	+	2496	7	NNC	ENSMUSG00000065999.14	novel	2762	6	NA	NA	-242719	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	37.6404776212465	33	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147395014	147669650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_147395147_147534439_147534577_147578832_147578926_147637751_147637807_147665698_147665826_147667290_147667431_147667838
transcript_41917.nnic	chr4	+	2540	7	Fusion	ENSMUSG00000065999.14_ENSMUSG00000082248.2	novel	2762	6	NA	NA	-82	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	39.0939040431284	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147527845	147669650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_147527997_147578832_147578926_147637751_147637884_147639766_147639852_147665698_147665826_147667290_147667431_147667838
transcript_4192.known	chr10	+	1230	6	FSM	ENSMUSG00000044475.15	ENSMUST00000219778.2	1230	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_5	94.044670237074	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTAAATCTGTATTTTAT	NA	False	NA	NA	False	ATTAAA	-35	NA	59838626	59862161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_59838730_59840616_59840750_59843548_59843649_59848283_59848382_59849417_59849597_59861544
transcript_41924.nnic	chr4	+	2464	7	Fusion	ENSMUSG00000065999.14_ENSMUSG00000078496.10	novel	1488	4	NA	NA	-2	-5	multi-exon	FALSE	non_canonical	0	0	junction_2	52.9068888604205	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147576871	147669650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_147577009_147578832_147578927_147639766_147639863_147661528_147661587_147665698_147665826_147667290_147667431_147667838
transcript_41927.nnic	chr4	+	2571	6	Fusion	ENSMUSG00000065999.14_ENSMUSG00000067916.10	novel	2813	7	NA	NA	-20	-5	multi-exon	FALSE	non_canonical	0	0	junction_1	40.4	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAAGTTTGCTTTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	147216474	147669650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr4_+_147216818_147217303_147217441_147578832_147578845_147665698_147665826_147667290_147667431_147667838
transcript_4196.known	chr10	-	1379	5	FSM	ENSMUSG00000020107.11	ENSMUST00000020307.11	1379	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	152.559004978402	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGCTGTGCGTATCCTTT	NA	False	NA	-4	True	AATAAA	-18	NA	59838933	59823729	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838239_59838290_59838777
transcript_41977.nnic	chr4	-	2628	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	232.809337226839	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147727022	147696393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_147698506_147699736_147699864_147702873_147702956_147725357_147725463_147726820
transcript_4198.known	chr10	-	1852	4	FSM	ENSMUSG00000020107.11	ENSMUST00000182898.8	1852	4	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_3	30.5650490302604	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAGGAGTTGAAACTATT	NA	False	NA	2	True	AATAAA	-28	NA	59838957	59823230	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_59824661_59826654_59826730_59832269_59832437_59838777
transcript_41982.known	chr4	-	2594	5	FSM	ENSMUSG00000066000.13	ENSMUST00000105720.8	2594	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	194.219592214586	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147726970	147696393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726791
transcript_41983.known	chr4	-	574	5	FSM	ENSMUSG00000066000.13	ENSMUST00000133006.2	574	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	194.56666595283	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCCAAAGTACACCTCATAAA	NA	False	NA	NA	False	AATATA	-14	NA	147726953	147698367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_147698506_147699736_147699864_147702873_147702956_147725368_147725463_147726820
transcript_41989.nnic	chr4	-	2630	5	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	178.0028089666	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147727022	147696393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_147698506_147699736_147699877_147702873_147702956_147725368_147725463_147726820
transcript_41991.nnic	chr4	-	2472	4	NNC	ENSMUSG00000066000.13	novel	2594	5	NA	NA	3248	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	219.606213229246	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGACTTGCTTGTTTTTA	NA	False	NA	-5	True	AATAAA	-18	NA	147723705	147696393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_147698506_147699736_147699864_147702873_147702956_147723554
transcript_41997.nnic	chr4	-	623	5	NNC	ENSMUSG00000062518.8	novel	2885	4	NA	NA	-66	165560	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	49.7964607176052	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATTGAAAAAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	147787076	147592398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_147592568_147761738_147761840_147762673_147762801_147766723_147766782_147786908
transcript_42.known	ERCC-00116	+	1977	1	FSM	ERCC-00116A	DQ668367	1977	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00116_+_0_2000
transcript_4200.known	chr10	-	566	3	FSM	ENSMUSG00000020107.11	ENSMUST00000182912.2	566	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	171	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGGACAGCCAGGGCTA	NA	False	NA	NA	False	NA	NA	NA	59838908	59824300	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_59824661_59826654_59826730_59838777
transcript_42000.known	chr4	-	2885	4	FSM	ENSMUSG00000062518.8	ENSMUST00000117638.2	2885	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	89.2238134630486	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTGGTTGTTTCCAA	NA	False	NA	NA	False	NA	NA	NA	147787010	147757958	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_147760511_147762673_147762801_147766723_147766828_147786908
transcript_42002.nnic	chr4	-	2993	6	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	108.849621037466	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	9471	False	NA	NA	False	NA	NA	NA	147894297	147838430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_147840693_147842158_147842286_147845677_147845713_147860154_147860286_147891546_147891641_147893953
transcript_42018.nnic	chr4	-	2723	5	NNC	ENSMUSG00000078495.11	novel	2729	6	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	111.895040104555	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	8382	False	NA	NA	False	NA	NA	NA	147860281	147838430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_147840693_147842158_147842286_147845677_147845783_147857209_147857300_147860142
transcript_42021.nnic	chr4	-	2263	5	NNC	ENSMUSG00000093594.2	novel	2516	4	NA	NA	5	-426	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	23.7907545067406	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTGTGCGTCTGTTTGT	9476	False	NA	-1	True	NA	NA	NA	147894292	147867201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_147868955_147880114_147880185_147891546_147891641_147893775_147893921_147894091
transcript_42022.nnic	chr4	-	2582	4	NNC	ENSMUSG00000078495.11	novel	2405	4	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	106.377733676847	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTTTGGTTGTTTTCA	8382	False	NA	NA	False	NA	NA	NA	147860281	147838430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_147840693_147842158_147842286_147845677_147845744_147860154
transcript_42028.nnic	chr4	-	1796	11	NNC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_10	97.9021960938569	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147952986	147945247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147951787_147951974_147952825
transcript_42029.nnic	chr4	-	1879	11	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_10	96.0689856301189	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147952983	147945247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147951787_147952060_147952825
transcript_4203.known	chr10	+	2657	15	FSM	ENSMUSG00000004207.15	ENSMUST00000179238.8	2657	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	365.052281690372	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCTGGCCTTGTGTCTCT	6990	False	NA	NA	False	AATAAA	-16	NA	60113449	60138376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60133316_60133326_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
transcript_42030.nic	chr4	-	1571	10	NIC	ENSMUSG00000029022.19	novel	1879	12	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	73.7735942588982	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147953019	147945247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_147945471_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
transcript_42034.known	chr4	-	1813	10	FSM	ENSMUSG00000029022.19	ENSMUST00000030886.15	1813	10	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_4	26.1538657058192	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAAGCCTCTCTTTTTTTT	NA	False	NA	1	True	AATAAA	-29	NA	147953176	147945234	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947025_147947353_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
transcript_42038.known	chr4	-	1909	9	FSM	ENSMUSG00000029022.19	ENSMUST00000156374.9	1909	9	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_8	23.8995292840675	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147952956	147945247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947407_147947484_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
transcript_4204.known	chr10	+	2646	14	FSM	ENSMUSG00000004207.15	ENSMUST00000105465.8	2646	14	0	0	0	0	multi-exon	FALSE	canonical	3	864	junction_6	81.2601199887849	490	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAGATCTGGCCTTGTGTC	6989	False	NA	NA	False	AATAAA	-13	NA	60113448	60138373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_60113605_60127420_60127555_60128284_60128360_60129128_60129255_60130312_60130511_60130744_60130889_60131725_60131783_60134876_60135009_60135242_60135339_60135557_60135838_60135926_60136085_60136316_60136398_60136552_60136661_60137472
transcript_42041.nic	chr4	-	2010	8	NIC	ENSMUSG00000029022.19	novel	1909	9	NA	NA	1	0	intron_retention	FALSE	canonical	3	219	junction_7	24.6915667665654	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCCTGTCTCCATGTAAGC	NA	False	NA	-12	True	AATAAA	-16	NA	147952979	147945247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_147945543_147945810_147945949_147946702_147946800_147946894_147947594_147949645_147949728_147950111_147950472_147950691_147950877_147952825
transcript_42042.known	chr4	-	3243	19	FSM	ENSMUSG00000019055.16	ENSMUST00000019199.14	3243	19	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_3	12.7855049099544	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGGTCTGGTTATACTTC	NA	False	NA	NA	False	AATAAA	-39	NA	148021224	147994209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_147995332_147997676_147997803_148000253_148000401_148001761_148001867_148002590_148002657_148003236_148003351_148004625_148004768_148005463_148005590_148005854_148005960_148007580_148007703_148009973_148010106_148010603_148010706_148011479_148011578_148012914_148012979_148013996_148014110_148015578_148015743_148016083_148016221_148017187_148017280_148021058
transcript_42043.known	chr4	+	2731	3	FSM	ENSMUSG00000044496.7	ENSMUST00000103232.2	2731	3	0	0	0	0	multi-exon	FALSE	canonical	3	503	junction_1	12.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTACTGGTCTGTGTGTGG	NA	False	NA	21	True	AATAAA	-16	NA	148025351	148031771	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_148026515_148029064_148029919_148031057
transcript_42049.known	chr4	-	3996	5	FSM	ENSMUSG00000029007.9	ENSMUST00000030865.9	3996	5	0	0	0	0	multi-exon	FALSE	canonical	3	1081	junction_4	44.285296657017	559	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATTGCTGTGTGATTAAT	NA	False	NA	-3	True	AATAAA	-18	NA	148172488	148161517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_148165062_148166019_148166216_148166727_148166834_148168415_148168451_148172373
transcript_42063.known	chr4	+	1162	10	FSM	ENSMUSG00000029003.12	ENSMUST00000084129.9	1162	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	269.730638385688	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGAACATGTGTATCG	NA	False	NA	30	True	AATAAA	-38	NA	148215371	148230156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_148215424_148224299_148224478_148225241_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229560_148229654_148229828
transcript_42066.known	chr4	+	1535	8	FSM	ENSMUSG00000029003.12	ENSMUST00000030860.9	1535	8	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_4	29.3730405338651	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGATGAACATGTGTATCG	NA	False	NA	30	True	AATAAA	-38	NA	148224638	148230156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229560_148229654_148229828
transcript_42067.known	chr4	+	949	8	FSM	ENSMUSG00000029003.12	ENSMUST00000105707.2	949	8	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_6	213.795439137317	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAGGATGAACATGTGTA	NA	False	NA	27	True	AATAAA	-35	NA	148225199	148230153	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_148225292_148225371_148225491_148227442_148227515_148227998_148228100_148228720_148228816_148229110_148229185_148229582_148229654_148229828
transcript_42082.known	chr4	-	1346	6	FSM	ENSMUSG00000055401.15	ENSMUST00000030858.14	1346	6	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_5	252.506158340742	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTTGAGGGCTTACA	NA	False	NA	-17	True	AATAAA	-17	NA	148236370	148230243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236070
transcript_42083.known	chr4	-	811	6	FSM	ENSMUSG00000055401.15	ENSMUST00000134261.2	811	6	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_5	248.50786707869	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCAGTTCTGGAAAGGCT	NA	False	NA	NA	False	NA	NA	NA	148236382	148230574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236286
transcript_42084.known	chr4	-	1163	6	FSM	ENSMUSG00000055401.15	ENSMUST00000056965.12	1163	6	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	262.901958912443	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTGGTTTGAGGGCTTAC	NA	False	NA	-18	True	AATAAA	-16	NA	148236516	148230244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236398
transcript_42085.known	chr4	-	952	6	FSM	ENSMUSG00000055401.15	ENSMUST00000152098.8	952	6	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_5	226.118552976088	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGTAGTAATCGGAAGGAG	NA	False	NA	NA	False	NA	NA	NA	148236597	148230465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236469
transcript_42086.nnic	chr4	-	1093	6	NNC	ENSMUSG00000055401.15	novel	1346	6	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_5	294.890895078163	88	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTTGAGGGCTTACA	NA	False	NA	-17	True	AATAAA	-17	NA	148236598	148230243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_148230643_148230777_148230914_148231296_148231393_148231751_148231879_148233835_148234124_148236551
transcript_42091.known	chr4	-	1829	6	FSM	ENSMUSG00000029001.16	ENSMUST00000057907.10	1829	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	3.00665927567458	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTGCCCTGCGGCTTT	NA	False	NA	-6	True	AATAAA	-13	NA	148244540	148237259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_148238102_148240602_148240739_148240851_148240948_148241036_148241164_148242993_148243281_148244199
transcript_42093.known	chr4	-	1034	5	FSM	ENSMUSG00000029001.16	ENSMUST00000105705.9	1034	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	15.4979837398289	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGCCTAGACCTGTTTC	NA	False	NA	NA	False	NA	NA	NA	148244334	148237723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_148238102_148240602_148240739_148241065_148241164_148242993_148243281_148244199
transcript_42094.nnic	chr4	+	1282	7	NNC	ENSMUSG00000041556.9	novel	1288	6	NA	NA	-371	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	23.3148736503832	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCACAGATGAATGGACATC	NA	False	NA	23	True	NA	NA	NA	148244706	148250881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_148244760_148245136_148245169_148248531_148248913_148249282_148249413_148249484_148249581_148250100_148250231_148250421
transcript_42095.known	chr4	+	1288	6	FSM	ENSMUSG00000041556.9	ENSMUST00000047951.9	1288	6	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	6.34350061086148	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGCACAGATGAATGGACATC	NA	False	NA	23	True	NA	NA	NA	148245077	148250881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_148245169_148248531_148248913_148249282_148249413_148249484_148249581_148250100_148250231_148250421
transcript_42097.nnic	chr4	-	2485	3	NNC	ENSMUSG00000047719.3	novel	576	3	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_2	31.5	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGTGGCTTTGTTTCTT	NA	False	NA	0	True	ATTAAA	-16	NA	148529236	148518951	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_148521100_148528384_148528587_148529101
transcript_42098.known	chr4	-	2992	2	FSM	ENSMUSG00000047719.3	ENSMUST00000051633.3	2992	2	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGTGGCTTTGTTTCTT	NA	False	NA	0	True	ATTAAA	-16	NA	148529228	148518951	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_148521100_148528384
transcript_42099.known	chr4	+	1003	5	FSM	ENSMUSG00000028991.16	ENSMUST00000057580.8	1003	5	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	19.0656759649376	90	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGAGGCCTCTGACTATGG	NA	False	NA	16	True	AATAAA	-22	NA	148533081	148539430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_148533145_148536713_148536890_148537478_148537588_148538214_148538448_148539008
transcript_42101.known	chr4	+	2773	25	FSM	ENSMUSG00000017264.17	ENSMUST00000173154.8	2773	25	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_23	124.10724948608	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCAGAAGAAAGATGGTTCT	NA	False	NA	NA	False	ATTAAA	-11	NA	148642887	148666847	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666218_148666292_148666740
transcript_42102.known	chr4	+	2816	25	FSM	ENSMUSG00000017264.17	ENSMUST00000097781.11	2816	25	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_15	122.740912483256	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGAAAGATGGTTCTTGG	NA	False	NA	NA	False	ATTAAA	-14	NA	148642911	148666850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657487_148657567_148657647_148657734_148657842_148660265_148660362_148660606_148660682_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
transcript_42105.known	chr4	+	2682	24	FSM	ENSMUSG00000017264.17	ENSMUST00000076022.7	2682	24	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_18	124.035058157659	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGGTTCTTGGTTGGTTGG	NA	False	NA	NA	False	ATTAAA	-22	NA	148642918	148666858	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148662874_148662963_148663837_148663915_148664815_148664988_148665558_148665621_148666214_148666292_148666740
transcript_42110.nic	chr4	+	2789	19	ISM	ENSMUSG00000017264.17	ENSMUST00000173154.8	2773	25	-15	5586	-13	191	5prime_fragment	TRUE	canonical	3	466	junction_4	45.4584670025532	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTTTATAACATTTGTATA	NA	False	NA	5	True	AATAAA	-15	NA	148642872	148661261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_148643036_148644004_148644142_148645469_148645594_148646763_148646869_148647169_148647336_148647477_148647593_148648300_148648377_148648569_148648681_148649056_148649201_148649660_148649852_148650735_148650893_148652823_148652973_148653107_148653159_148654843_148654956_148657375_148657427_148657567_148657647_148657734_148657842_148660265_148660362_148660606
transcript_42116.nic	chr4	+	1164	6	ISM	ENSMUSG00000006442.11	ENSMUST00000006611.9	1338	7	431	0	16	0	3prime_fragment	FALSE	canonical	3	3072	junction_5	98.0399918400649	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTCATTTTTGTTCCTA	9147	False	NA	28	True	AATACA	-36	NA	148676390	148679076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_148676622_148676938_148677032_148677744_148677899_148678224_148678455_148678539_148678663_148678743
transcript_42128.nic	chr4	-	1434	8	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_2	406.055741624377	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711527	148701182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_148701302_148702022_148702093_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_4213.known	chr10	+	789	4	FSM	ENSMUSG00000020098.8	ENSMUST00000020298.8	789	4	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_3	1.24721912892465	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCAGCTTCTAGAACCTTC	NA	False	NA	6	True	AATAAA	-17	NA	60925137	60930103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_60925196_60927842_60927975_60928382_60928464_60929585
transcript_42130.nic	chr4	-	1522	8	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	54	junction_2	402.382192164898	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711527	148701182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_148701302_148702022_148702163_148703103_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_42132.known	chr4	-	2006	8	FSM	ENSMUSG00000041459.16	ENSMUST00000045180.14	2006	8	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_2	361.175800938647	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGGATCGTGAGTTATTG	NA	False	NA	NA	False	NA	NA	NA	148711222	148700375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_148701302_148702022_148702163_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_42134.nic	chr4	-	1495	8	NIC	ENSMUSG00000041459.16	novel	2006	8	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	168	junction_2	371.00008251278	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711527	148701182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_148701302_148702022_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_4214.known	chr10	-	4102	15	FSM	ENSMUSG00000020097.15	ENSMUST00000122259.8	4102	15	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_14	78.4471744785844	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGATGGTTGATTTTT	NA	False	NA	-2	True	AATAAA	-16	NA	60983423	60934420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983301
transcript_42142.known	chr4	-	1304	8	FSM	ENSMUSG00000041459.16	ENSMUST00000191450.7	1304	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	409.46231542732	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCAAGTCAAATGGATTCA	NA	False	NA	-11	True	AATAAA	-17	NA	148711215	148701181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_148701302_148702022_148702283_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_4215.known	chr10	-	4070	15	FSM	ENSMUSG00000020097.15	ENSMUST00000092498.12	4070	15	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_14	85.0811437417726	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTGGATGGTTGATTTTT	NA	False	NA	-2	True	AATAAA	-16	NA	60983453	60934420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_60936788_60937459_60937581_60938346_60938494_60938899_60939139_60940241_60940392_60941200_60941300_60942043_60942150_60943355_60943445_60947940_60948070_60949216_60949294_60949788_60949937_60953473_60953542_60959087_60959254_60982036_60982111_60983363
transcript_42158.nic	chr4	-	2463	7	NIC	ENSMUSG00000041459.16	novel	1304	8	NA	NA	-51	0	intron_retention	FALSE	canonical	3	409	junction_1	257.510949066033	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711527	148701182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_148701302_148702022_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_42161.known	chr4	-	6425	7	FSM	ENSMUSG00000041459.16	ENSMUST00000105702.9	6425	7	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	393.959811825183	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTAGTAGTCATTTAC	NA	False	NA	NA	False	ATTAAA	-20	NA	148711453	148696838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_148702093_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_42163.known	chr4	-	6513	7	FSM	ENSMUSG00000041459.16	ENSMUST00000172073.8	6513	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	389.131261772797	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTAGTAGTCATTTAC	NA	False	NA	NA	False	ATTAAA	-20	NA	148711453	148696838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_148702163_148703103_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_42164.known	chr4	-	6495	7	FSM	ENSMUSG00000041459.16	ENSMUST00000165113.8	6495	7	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_1	333.080404040159	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTAGTAGTCATTTAC	NA	False	NA	NA	False	ATTAAA	-20	NA	148711453	148696838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_148702163_148703121_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_42165.known	chr4	-	1904	7	FSM	ENSMUSG00000041459.16	ENSMUST00000105699.8	1904	7	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	346.808024064547	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTCAAGTCAAATGGATTC	NA	False	NA	-12	True	AATAAA	-16	NA	148711215	148701182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_42173.known	chr4	-	7477	6	FSM	ENSMUSG00000041459.16	ENSMUST00000084125.10	7477	6	0	0	0	0	multi-exon	FALSE	canonical	3	1029	junction_2	35.1146692993114	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGTAGTAGTCATTTAC	NA	False	NA	NA	False	ATTAAA	-20	NA	148711476	148696838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_148703249_148703640_148703812_148705048_148705190_148706405_148706570_148709581_148709834_148711137
transcript_42175.known	chr4	+	738	5	FSM	ENSMUSG00000028979.18	ENSMUST00000105701.9	738	5	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	7.49583217528247	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGGCTGTGTGTCTCT	NA	False	NA	5	True	AATAAA	-15	NA	148687010	148688874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_148687048_148687124_148687354_148687448_148687627_148688143_148688276_148688712
transcript_42177.known	chr4	-	370	2	FSM	ENSMUSG00000041459.16	ENSMUST00000190478.2	370	2	0	0	0	0	multi-exon	FALSE	canonical	3	1096	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTAGACTTCCGTGCCATCT	NA	False	NA	NA	False	NA	NA	NA	148711215	148709541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_148709834_148711137
transcript_42178.known	chr4	-	741	6	FSM	ENSMUSG00000041459.16	ENSMUST00000190552.7	741	6	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_2	398.328206382626	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGATTCATCACCTGTC	NA	False	NA	-2	True	AATAAA	-26	NA	148706447	148701172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_148701302_148702022_148702163_148703130_148703249_148703640_148703812_148705048_148705190_148706405
transcript_42182.known	chr4	-	2006	9	FSM	ENSMUSG00000028975.17	ENSMUST00000103217.11	2006	9	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_6	18.1757909043871	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGGCTCTGACCTCGTC	NA	False	NA	-12	True	AATAAA	-20	NA	149184333	149044991	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_149046252_149047898_149047991_149050678_149050777_149051980_149052084_149055006_149055093_149068493_149068623_149126177_149126263_149160476_149160525_149184228
transcript_42185.known	chr4	+	2457	6	FSM	ENSMUSG00000028974.14	ENSMUST00000030816.4	2457	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	2.13541565040626	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCAGCTGCCTTTGTTTGTC	NA	False	NA	6	True	AATAAA	-16	NA	149188602	149205104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228_149202381_149203535
transcript_42186.known	chr4	+	1835	5	FSM	ENSMUSG00000028974.14	ENSMUST00000103216.10	1835	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	2.34520787991171	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAACAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	149188602	149203327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_149188844_149190608_149190771_149192225_149192369_149201864_149202055_149202228
transcript_4219.known	chr10	+	2095	3	FSM	ENSMUSG00000037171.7	ENSMUST00000049339.7	2095	3	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_2	2.5	204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTCTCACAATGTGTT	NA	False	NA	20	True	ATTAAA	-17	NA	61253750	61261117	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_61254275_61258760_61259477_61260262
transcript_42190.known	chr4	-	1110	5	FSM	ENSMUSG00000073705.11	ENSMUST00000030813.10	1110	5	0	0	0	0	multi-exon	FALSE	canonical	3	344	junction_3	40.8923892674419	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGTCTGCTTGAAGGG	NA	False	NA	NA	False	NA	NA	NA	149222086	149212654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_149213386_149214609_149214677_149216095_149216130_149216715_149216840_149221932
transcript_42191.known	chr4	-	689	5	FSM	ENSMUSG00000073705.11	ENSMUST00000177408.2	689	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	159.066809863026	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAGCAATCAGCTGTGCTG	NA	False	NA	-144	True	NA	NA	NA	149222026	149212996	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_149213386_149214609_149214677_149216095_149216130_149216734_149216840_149221932
transcript_42193.known	chr4	-	518	5	FSM	ENSMUSG00000073705.11	ENSMUST00000176124.8	518	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	158.113883008419	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGCCTTCATCTCATCTG	NA	False	NA	NA	False	GGGGCT	-22	NA	149222022	149213232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_149213386_149214609_149214677_149216095_149216130_149216715_149216890_149221932
transcript_42198.known	chr4	-	2218	13	FSM	ENSMUSG00000028961.16	ENSMUST00000084124.7	2218	13	0	0	0	0	multi-exon	FALSE	canonical	1	98	junction_7	73.9915066447194	704	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTTCTTTGTTTCTTCTCC	NA	False	NA	-8	True	AATAAA	-16	NA	149251164	149234447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_149235221_149235309_149235433_149235569_149235670_149238320_149238455_149238622_149238754_149241063_149241254_149242417_149242553_149244515_149244586_149245291_149245411_149246085_149246152_149249506_149249687_149250463_149250540_149251043
transcript_42199.known	chr4	-	5626	27	FSM	ENSMUSG00000028960.21	ENSMUST00000103212.10	5626	27	0	0	0	0	multi-exon	TRUE	canonical	3	203	junction_22	27.7325828917206	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCCTGTGAGTCGTCTTT	NA	False	NA	-2	True	AATAAA	-23	NA	149511206	149412872	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_149414195_149414647_149414795_149415779_149415955_149419568_149419761_149421841_149421977_149427335_149427481_149428971_149429099_149432383_149432620_149435114_149435214_149435914_149436043_149437384_149437485_149439874_149440014_149442081_149442281_149443653_149443768_149444734_149444834_149444916_149445034_149445740_149445798_149449910_149449995_149452757_149452873_149455615_149455717_149457284_149457427_149465639_149465869_149468194_149468340_149469581_149469670_149471537_149471674_149483055_149483243_149510338
transcript_42200.known	chr4	-	621	2	FSM	ENSMUSG00000028960.21	ENSMUST00000173005.2	621	2	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGGTGTGTCTTGCTTCTGTC	NA	False	NA	NA	False	ATTAAA	-30	NA	149510673	149482956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_149483243_149510338
transcript_42201.known	chr4	-	1238	5	FSM	ENSMUSG00000028992.14	ENSMUST00000030845.13	1238	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	4.60298815988049	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACTTTAAATCAATTTTTCT	1652	False	NA	34	True	ACTAAA	-20	NA	149569655	149553015	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_149553669_149554096_149554240_149557741_149557926_149558884_149559053_149569565
transcript_42203.known	chr4	-	2657	4	FSM	ENSMUSG00000028992.14	ENSMUST00000119921.8	2657	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	4.98887651569859	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGGACGACTACCCTCT	1648	False	NA	-7	True	AATAAA	-17	NA	149569659	149552028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_149554240_149557741_149557926_149558884_149559053_149569565
transcript_42204.known	chr4	-	1378	5	FSM	ENSMUSG00000028992.14	ENSMUST00000105693.2	1378	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	20.4022057631032	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAACAGCTCAGTCACTAA	1678	False	NA	-6	True	ATTAAA	-25	NA	149569629	149553055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_149553669_149554096_149554240_149557741_149557926_149558884_149559053_149569359
transcript_42206.nnic	chr4	+	1304	8	NIC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	53	junction_1	51.1324809905103	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569679	149581125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_149569731_149570314_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
transcript_42207.nic	chr4	+	1583	8	NIC	ENSMUSG00000028990.14	novel	1817	7	NA	NA	23	0	intron_retention	FALSE	canonical	3	32	junction_1	58.2405287035881	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569719	149581125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_149570050_149570314_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
transcript_42209.known	chr4	+	1817	7	FSM	ENSMUSG00000028990.14	ENSMUST00000030842.8	1817	7	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_3	14.9517743280039	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGTGTCTATGAAAATTCA	NA	False	NA	27	True	NA	NA	NA	149569750	149581125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_149570457_149571208_149571318_149572512_149572649_149573086_149573186_149577655_149577752_149578188_149578271_149580536
transcript_42210.known	chr4	-	824	3	FSM	ENSMUSG00000039936.19	ENSMUST00000137430.8	824	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTTTTTTCATTCTTTCT	NA	False	NA	NA	False	AATAAA	-11	NA	149760550	149757895	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_149758419_149758532_149758652_149760368
transcript_42216.nnic	chr4	-	1049	6	NNC	ENSMUSG00000028982.10	novel	1887	7	NA	NA	14618	-436	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_5	188.488089809409	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCGTGCTGGGCTGTGTTC	9963	False	NA	-3	True	ATTAAA	-19	NA	149844116	149828928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_149829395_149833505_149833787_149836860_149836928_149838255_149838357_149840531_149840610_149844060
transcript_42218.known	chr4	-	3092	3	FSM	ENSMUSG00000039911.14	ENSMUST00000038562.9	3092	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	6.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCGAGTCCTTTCGTGC	NA	False	NA	3	True	AATAAA	-24	NA	150039500	149980739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_149982799_149990872_149991715_150039309
transcript_42219.nic	chr4	+	1454	6	ISM	ENSMUSG00000062064.7	ENSMUST00000059893.8	1578	12	9413	-537	557	537	3prime_fragment	FALSE	canonical	3	15	junction_5	2.57681974534502	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAAGATTATTTGGGCTCC	1919	False	NA	NA	False	NA	NA	NA	150242841	150253476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_150243123_150244475_150244587_150247654_150247757_150249565_150249642_150250811_150250940_150252720
transcript_42222.known	chr4	-	1460	7	FSM	ENSMUSG00000028972.12	ENSMUST00000105683.9	1460	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	3.44802681092953	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTTACTATTCTTTT	NA	False	NA	2	True	AATAAA	-28	NA	150282927	150271471	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_150271966_150273577_150273702_150276931_150277090_150278164_150278235_150280512_150280606_150281774_150281924_150282555
transcript_42227.known	chr4	+	2027	12	FSM	ENSMUSG00000063524.14	ENSMUST00000080926.13	2027	12	0	0	0	0	multi-exon	FALSE	canonical	3	2891	junction_9	3966.2265098293	1807	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGGGCATCTCATTTGTG	NA	False	NA	5	True	AATAAA	-22	NA	150321408	150333336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_150321798_150323929_150324024_150325501_150325598_150326578_150326638_150328461_150328532_150328697_150328832_150329571_150329795_150331026_150331225_150331907_150332110_150332287_150332397_150332517_150332577_150332942
transcript_4223.known	chr10	+	3216	5	FSM	ENSMUSG00000037151.9	ENSMUST00000049242.9	3216	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	4.84767985741633	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCGCTGGTGCTTGGTGTCT	1774	False	NA	3	True	AATAAA	-20	NA	61311579	61418570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_61311669_61318114_61318262_61362838_61362989_61383826_61383995_61415908
transcript_42241.known	chr4	+	1878	3	FSM	ENSMUSG00000063524.14	ENSMUST00000130632.8	1878	3	0	0	0	0	multi-exon	FALSE	canonical	3	15633	junction_2	329.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATCATTT	NA	False	NA	NA	False	NA	NA	NA	150321696	150327184	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_150321798_150323929_150324024_150325501
transcript_42242.known	chr4	+	562	2	FSM	ENSMUSG00000063524.14	ENSMUST00000148605.2	562	2	0	0	0	0	multi-exon	FALSE	canonical	3	16292	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGCCCAACCTGTGCTA	NA	False	NA	NA	False	NA	NA	NA	150321699	150324393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_150321798_150323929
transcript_42243.known	chr4	+	3043	4	FSM	ENSMUSG00000028967.11	ENSMUST00000030811.2	3043	4	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_2	19.3275853524323	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATGTGTCTTGTCTAAA	3781	False	NA	NA	False	AATAAA	-28	NA	150939529	150953344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_150939729_150949531_150949727_150949820_150949898_150950772
transcript_42248.known	chr4	-	919	7	FSM	ENSMUSG00000028964.15	ENSMUST00000105673.8	919	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	2143.40985477709	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCAGTAGTATGTGAAGCA	NA	False	NA	-107	True	NA	NA	NA	150994108	150981695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150993847
transcript_42250.known	chr4	-	882	7	FSM	ENSMUSG00000028964.15	ENSMUST00000105675.8	882	7	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_6	2038.03331806807	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	5729	False	NA	-1	True	AATAAA	-26	NA	150998894	150981589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150998776
transcript_42256.known	chr4	-	908	7	FSM	ENSMUSG00000028964.15	ENSMUST00000030805.14	908	7	0	0	0	0	multi-exon	FALSE	canonical	3	5402	junction_3	199.85446093484	5365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTGTGTCTGGGGTCTTT	NA	False	NA	-1	True	AATAAA	-26	NA	150994383	150981589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_150981929_150985464_150985552_150988271_150988342_150989706_150989767_150991496_150991599_150992774_150992881_150994239
transcript_42258.known	chr4	-	2198	4	FSM	ENSMUSG00000014592.22	ENSMUST00000185034.8	2198	4	0	0	0	0	multi-exon	FALSE	canonical	3	969	junction_2	33.2565782966318	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTACTTGCTTTTTTAG	NA	False	NA	NA	False	AATACA	-12	NA	151946161	151875030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_151876960_151914874_151914994_151920270_151920341_151946081
transcript_42259.known	chr4	-	506	3	FSM	ENSMUSG00000014592.22	ENSMUST00000135780.2	506	3	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_2	493.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTTCATCTTTTTAAAA	NA	False	NA	-23	True	AATAAA	-10	NA	151946195	151876686	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_151876960_151914874_151914994_151946081
transcript_4226.known	chr10	+	1364	11	FSM	ENSMUSG00000020089.9	ENSMUST00000020286.7	1364	11	0	0	0	0	multi-exon	FALSE	canonical	3	3777	junction_3	128.102654148929	2987	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGCTTAGGATAGTTTCT	2052	False	NA	15	True	AATAAA	-16	NA	61484330	61509947	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_61484571_61487338_61487398_61495227_61495282_61496690_61496811_61499468_61499556_61501118_61501246_61502689_61502818_61503363_61503450_61506196_61506267_61508169_61508213_61509597
transcript_42260.known	chr4	-	2178	6	FSM	ENSMUSG00000014592.22	ENSMUST00000153938.3	2178	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	486.741574143816	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACGAGTGGGCCACTAGTGT	NA	False	NA	NA	False	NA	NA	NA	151946161	151864909	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_151866589_151874864_151875011_151876875_151876960_151914874_151914994_151920270_151920341_151946081
transcript_42261.known	chr4	+	1999	7	FSM	ENSMUSG00000028965.14	ENSMUST00000105672.10	1999	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.34370962471642	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGTTTTTTCGCTTCA	7527	False	NA	NA	False	ATTAAA	-21	NA	151004611	151030559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_151004718_151014277_151014403_151015185_151015291_151016764_151016903_151017489_151017560_151018743_151018869_151029229
transcript_42262.nnic	chr4	-	2268	5	NNC	ENSMUSG00000028955.4	novel	2120	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	94.3239100122551	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCGTGTTTCTTGGAGTG	NA	False	NA	3	True	AATAAA	-22	NA	151142410	151131756	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_151133504_151134451_151134504_151135373_151135533_151140618_151140701_151142182
transcript_42263.known	chr4	-	2120	5	FSM	ENSMUSG00000028955.4	ENSMUST00000030797.4	2120	5	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_4	30.2685893295343	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCGTGTTTCTTGGAGTG	NA	False	NA	3	True	AATAAA	-22	NA	151142410	151131756	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_151133504_151134451_151134504_151135373_151135533_151140618_151140701_151142330
transcript_42265.known	chr4	+	3151	16	FSM	ENSMUSG00000039768.17	ENSMUST00000062904.11	3151	16	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_7	69.5258864660415	409	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTCTGGCTATGTGGCTT	9070	False	NA	NA	False	NA	NA	NA	152018147	152066594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_152018282_152034850_152034981_152037298_152037373_152041559_152041662_152052955_152053085_152054302_152054426_152055313_152055388_152057936_152058127_152058216_152058303_152058653_152058771_152061406_152061563_152062455_152062526_152063728_152063787_152063900_152064044_152064374_152064505_152065159
transcript_42280.known	chr4	-	1124	4	FSM	ENSMUSG00000039759.11	ENSMUST00000036680.8	1124	4	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	10.8730042868667	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCAGGCTGTCACTCGGTT	NA	False	NA	-3	True	AATAAA	-16	NA	152073454	152067095	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_152067810_152068091_152068194_152070125_152070319_152073339
transcript_42281.known	chr4	-	832	3	FSM	ENSMUSG00000039759.11	ENSMUST00000105665.3	832	3	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	59.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGAGAGCTGGTCATTCT	NA	False	NA	NA	False	NA	NA	NA	152073427	152067258	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_152067810_152070125_152070319_152073339
transcript_42282.known	chr4	-	501	2	FSM	ENSMUSG00000039759.11	ENSMUST00000146471.2	501	2	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCCCATCTCCAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	152073437	152069915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_152070319_152073339
transcript_42283.known	chr4	-	2218	11	FSM	ENSMUSG00000028952.13	ENSMUST00000066715.11	2218	11	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_10	11.2782977438973	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCAGTGTCTGTTCCTTGG	8679	False	NA	-1	True	AATAAA	-18	NA	152112118	152104230	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_152104578_152104646_152104736_152105000_152105166_152105235_152105373_152105745_152105901_152105998_152106086_152106483_152106577_152107152_152107265_152110234_152110477_152110844_152111517_152111999
transcript_42287.known	chr4	+	3818	22	FSM	ENSMUSG00000039713.18	ENSMUST00000118648.8	3818	22	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	15.0256017344728	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGGAAAGAGTCATGCGCT	NA	False	NA	28	True	TATAAA	-17	NA	152171314	152199847	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_152171403_152172101_152172179_152186500_152186631_152187446_152187550_152187870_152187932_152188207_152188300_152188665_152188803_152189064_152189214_152190523_152190734_152190825_152191018_152191362_152191459_152191914_152191966_152192168_152192319_152192432_152192544_152192637_152192788_152192859_152192998_152193134_152193255_152196564_152196698_152196779_152196896_152196975_152197158_152198254_152199026_152199286
transcript_42290.known	chr4	+	1457	9	FSM	ENSMUSG00000028937.15	ENSMUST00000075363.10	1457	9	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_1	55.2466062306093	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGCCTAGGTGGTCATTT	NA	False	NA	17	True	AATAAA	-22	NA	152262590	152356309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_152262798_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
transcript_42293.known	chr4	+	1425	9	FSM	ENSMUSG00000028937.15	ENSMUST00000030779.10	1425	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	152.008172066504	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATGAAGCCTAGGTGGT	NA	False	NA	12	True	AATAAA	-17	NA	152270662	152356304	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_152270843_152291220_152291339_152302192_152302350_152307527_152307620_152314231_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
transcript_42295.nnic	chr4	+	1323	8	NNC	ENSMUSG00000028937.15	novel	1457	9	NA	NA	25	0	at_least_one_novel_splicesite	FALSE	canonical	3	30	junction_3	161.236041952442	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCATGAAGCCTAGGTGGT	NA	False	NA	12	True	AATAAA	-17	NA	152262615	152356304	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_152262798_152291220_152291339_152302192_152302350_152314243_152314347_152322136_152322224_152337605_152337723_152345302_152345488_152355930
transcript_42302.nic	chr4	-	1522	8	ISM	ENSMUSG00000058498.13	ENSMUST00000076183.12	2466	17	5028	0	-177	0	3prime_fragment	TRUE	canonical	3	8	junction_7	5.57325977232319	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAGAGTACAGTGATCACT	NA	False	NA	NA	False	AATAAA	-18	NA	152398037	152391475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_152392074_152393294_152393361_152395840_152395959_152396228_152396281_152396527_152396714_152396846_152397034_152397643_152397742_152397820
transcript_42315.known	chr4	+	2048	4	FSM	ENSMUSG00000028936.16	ENSMUST00000188151.2	2048	4	0	0	0	0	multi-exon	FALSE	canonical	3	4243	junction_1	691.49805173663	10895	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTCACTGTGCAAGGCTT	NA	False	NA	28	True	ATTAAA	-18	NA	152410325	152418527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_152410353_152411937_152412043_152414460_152414586_152416736
transcript_4232.known	chr10	+	1432	2	FSM	ENSMUSG00000020089.9	ENSMUST00000160470.2	1432	2	0	0	0	0	multi-exon	FALSE	canonical	3	3987	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAACTT	2121	False	NA	NA	False	AATAGA	-43	NA	61484399	61488599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_61484571_61487338
transcript_42322.known	chr4	+	576	4	FSM	ENSMUSG00000028936.16	ENSMUST00000150485.2	576	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2633.7473092324	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAACCGGTGGTTTATC	NA	False	NA	9	True	AATAAA	-8	NA	152411936	152416930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_152412043_152413716_152413871_152414463_152414586_152416736
transcript_42323.known	chr4	-	1799	16	FSM	ENSMUSG00000028931.13	ENSMUST00000105648.10	1799	16	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_13	3.92371705854991	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCAGGTACTTTGCTCAA	NA	False	NA	NA	False	NA	NA	NA	152533313	152477031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_152477582_152478198_152478288_152478746_152478868_152479385_152479481_152479581_152479703_152481212_152481299_152485404_152485492_152486381_152486426_152487492_152487538_152489056_152489102_152491583_152491664_152496441_152496480_152497273_152497318_152519238_152519281_152520261_152520395_152533134
transcript_42324.known	chr4	-	3597	15	FSM	ENSMUSG00000028931.13	ENSMUST00000030768.10	3597	15	0	0	0	0	multi-exon	TRUE	canonical	1	4	junction_13	3.43748840443313	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTTTCTGATCTCTCCTTT	NA	False	NA	-5	True	AATAAA	-21	NA	152562046	152475201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_152477582_152478198_152478288_152478746_152478868_152479385_152479481_152479581_152479703_152481212_152481299_152485404_152485492_152486381_152486426_152487492_152487538_152489056_152489102_152491583_152491664_152496441_152496480_152497273_152497318_152520261_152520395_152561857
transcript_42327.known	chr4	+	940	4	FSM	ENSMUSG00000047613.11	ENSMUST00000147826.2	940	4	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	332.870345129551	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGGATGAATTCTGCTGGAA	NA	False	NA	NA	False	NA	NA	NA	154041722	154046260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_154041780_154044212_154044320_154044987_154045450_154045946
transcript_42329.nic	chr4	+	1624	3	ISM	ENSMUSG00000047613.11	ENSMUST00000058393.9	1098	4	-29	0	-29	0	intron_retention	FALSE	canonical	3	743	junction_1	52	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGTTCACAAAAGTGT	NA	False	NA	NA	False	AATAAA	-29	NA	154041664	154046382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_154041780_154044205_154044320_154044987
transcript_42330.known	chr4	+	541	3	FSM	ENSMUSG00000047613.11	ENSMUST00000141493.8	541	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	388	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATCCTTCCATGAGCAGA	NA	False	NA	NA	False	NA	NA	NA	154041722	154045968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_154041780_154044987_154045450_154045946
transcript_42332.known	chr4	-	2093	7	FSM	ENSMUSG00000029027.10	ENSMUST00000030893.3	2093	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	5.79271573232759	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACATGTCAAAATTTTTTGA	NA	False	NA	NA	False	AATAAA	-15	NA	154059583	154048905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_154050071_154053549_154053651_154054397_154054569_154056037_154056118_154057236_154057426_154059025_154059153_154059323
transcript_42333.known	chr4	+	5151	22	FSM	ENSMUSG00000039523.17	ENSMUST00000047497.15	5151	22	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_14	10.5677814386534	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCATGTCACTTTTATTA	NA	False	NA	13	True	AGTAAA	-10	NA	154059650	154093189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_154060055_154063400_154063553_154065627_154065802_154066090_154066230_154067520_154067584_154068045_154068132_154069355_154069525_154069771_154069931_154071215_154071432_154072862_154073058_154073580_154073749_154074231_154074406_154077274_154077452_154077926_154078140_154078861_154078970_154079891_154079929_154080728_154080796_154081317_154081427_154086721_154086861_154086984_154087053_154090622_154090714_154091146
transcript_42335.nnic	chr4	+	1658	7	NNC	ENSMUSG00000029028.15	novel	3468	7	NA	NA	-1526	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	159.451925879453	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGAGTGTAATCTTCT	NA	False	NA	43	True	AATAGA	-44	NA	154100344	154105127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_154100566_154101874_154101992_154102826_154102943_154103386_154103490_154103850_154103941_154104087_154104674_154104702
transcript_42336.nnic	chr4	+	2610	7	NNC	ENSMUSG00000029028.15	novel	3468	7	NA	NA	-1635	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_6	159.451925879453	41	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGCATCAGCAGCCTTA	NA	False	NA	16	True	AATAAA	-18	NA	154100235	154105970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_154100566_154101874_154101992_154102826_154102943_154103386_154103490_154103850_154103941_154104087_154104674_154104702
transcript_42338.known	chr4	-	2568	4	FSM	ENSMUSG00000078350.12	ENSMUST00000125533.9	2568	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	12.1928941054479	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGTTTCAAAAATCTCAATG	NA	False	NA	NA	False	NA	NA	NA	154110687	154105912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_154107911_154108144_154108275_154109960_154110079_154110365
transcript_42339.known	chr4	-	707	4	FSM	ENSMUSG00000078350.12	ENSMUST00000146054.8	707	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	2.35702260395516	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTGGGGATTCCCTCCC	NA	False	NA	-23	True	AATAAA	-16	NA	154110607	154107767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_154107911_154108144_154108349_154109960_154110079_154110365
transcript_42340.known	chr4	+	1598	12	FSM	ENSMUSG00000029029.15	ENSMUST00000030895.12	1598	12	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_4	6.78354840224641	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAACAGTGGTGGTTGTTT	NA	False	NA	25	True	TATAAA	-30	NA	154226828	154241273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_154226971_154229699_154229853_154230947_154231065_154233166_154233240_154236084_154236189_154236794_154236882_154237017_154237153_154237249_154237328_154238991_154239098_154239697_154239824_154240557_154240750_154240988
transcript_42342.known	chr4	-	1724	4	FSM	ENSMUSG00000029030.15	ENSMUST00000030896.15	1724	4	0	0	0	0	multi-exon	FALSE	canonical	3	665	junction_1	33.0891052899423	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTTGCTCCTTTTTGAA	NA	False	NA	-3	True	AGTAAA	-16	NA	154245123	154241941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_154243023_154243725_154243880_154244541_154244719_154244811
transcript_42344.known	chr4	-	2860	15	FSM	ENSMUSG00000029032.13	ENSMUST00000030898.12	2860	15	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_12	5.46976849116476	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAACAGGTAGGTGGAGAC	NA	False	NA	34	True	AATATA	-4	NA	154384511	154362942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_154363553_154364154_154364257_154364692_154364767_154365287_154365477_154365774_154365927_154366280_154366374_154366462_154366538_154366972_154367103_154367216_154367370_154369441_154369603_154370070_154370128_154371375_154371546_154372424_154372471_154375392_154376011_154384281
transcript_42348.known	chr4	+	387	2	FSM	ENSMUSG00000084987.2	ENSMUST00000144347.2	387	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACGAAGATTTATCCCCTGG	2926	False	NA	NA	False	NA	NA	NA	154685653	154688659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_154685865_154688483
transcript_42350.known	chr4	-	883	7	FSM	ENSMUSG00000029059.10	ENSMUST00000030935.10	883	7	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_6	8.17856276425687	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCGTCCTTCCCACAGCA	NA	False	NA	-6	True	ATTAAA	-45	NA	154983567	154980855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_154981055_154981496_154981616_154981805_154981882_154981962_154982027_154982584_154982637_154982932_154983138_154983399
transcript_42353.known	chr4	+	2508	19	FSM	ENSMUSG00000029056.14	ENSMUST00000030931.11	2508	19	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_8	27.1993100856585	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATAATCTTTTATATAT	NA	False	NA	NA	False	NA	NA	NA	155048579	155065328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155048727_155053586_155053670_155054029_155054245_155054450_155054635_155054903_155054997_155055330_155055485_155055829_155056012_155056605_155056688_155056925_155057027_155059086_155059243_155060718_155060832_155061039_155061128_155061659_155061812_155062607_155062664_155062849_155062900_155063377_155063483_155063948_155064050_155064182_155064252_155064951
transcript_42355.known	chr4	+	1688	6	FSM	ENSMUSG00000029047.14	ENSMUST00000103180.4	1688	6	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_5	7.62627038597505	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGAGCCGGGCGTGGTGGC	NA	False	NA	NA	False	TTTAAA	-9	NA	155151472	155156890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155151632_155152279_155152361_155153119_155153527_155154843_155155020_155155097_155155234_155156161
transcript_42357.known	chr4	-	1803	8	FSM	ENSMUSG00000029048.4	ENSMUST00000149796.2	1803	8	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_7	582.015218259552	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTCGTCTACACGAGTC	NA	False	NA	-13	True	ATTAAA	-22	NA	155170828	155158566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155167565_155167775_155170661
transcript_4237.known	chr10	+	2613	7	FSM	ENSMUSG00000020088.11	ENSMUST00000020285.10	2613	7	0	0	0	0	multi-exon	FALSE	canonical	3	1130	junction_5	94.5492229241233	312	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCTCTCCTTTTTTA	NA	False	NA	NA	False	NA	NA	NA	61516088	61529076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_61516193_61520658_61520733_61520844_61520965_61521332_61521399_61522153_61522258_61525552_61525685_61527063
transcript_42375.known	chr4	-	1596	7	FSM	ENSMUSG00000029048.4	ENSMUST00000030914.4	1596	7	0	0	0	0	multi-exon	FALSE	canonical	3	1097	junction_6	206.502959354635	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTTCGTCTACACGAGTC	NA	False	NA	-13	True	ATTAAA	-22	NA	155170830	155158566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_155159486_155160045_155160182_155161168_155161248_155162950_155163051_155165255_155165361_155167123_155167212_155170661
transcript_42385.known	chr4	+	1659	14	FSM	ENSMUSG00000029049.15	ENSMUST00000030915.11	1659	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_9	6.41927570616156	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGCACCTTTTGTGGG	NA	False	NA	17	True	AATAAA	-18	NA	155171033	155229962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155171139_155171877_155171950_155173942_155174042_155175339_155175451_155176725_155176817_155177518_155177607_155185722_155185820_155186546_155186658_155195384_155195509_155195873_155196047_155213135_155213258_155213339_155213423_155226858_155226903_155229623
transcript_42387.nnic	chr4	+	1775	14	NNC	ENSMUSG00000029049.15	novel	1659	14	NA	NA	-136	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_3	9.60892090438596	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTAGCACCTTTTGTGGG	NA	False	NA	17	True	AATAAA	-18	NA	155170897	155229962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_155171139_155171877_155171950_155173942_155174042_155175359_155175451_155176725_155176817_155177518_155177607_155185722_155185820_155186546_155186658_155195384_155195509_155195873_155196047_155213135_155213258_155213339_155213423_155226858_155226903_155229623
transcript_42390.known	chr4	+	1076	4	FSM	ENSMUSG00000073684.14	ENSMUST00000178473.8	1076	4	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	46.5784881201135	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTTCCTTCATAGCAA	NA	False	NA	8	True	NA	NA	NA	155334422	155341144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155334520_155334962_155335108_155335212_155335494_155340591
transcript_42392.known	chr4	+	710	4	FSM	ENSMUSG00000073684.14	ENSMUST00000105627.8	710	4	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_1	91.7617688485909	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTCAGCCTGACAGGAT	NA	False	NA	NA	False	NA	NA	NA	155334445	155340840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155334520_155335001_155335108_155335212_155335494_155340591
transcript_42396.known	chr4	+	1479	3	FSM	ENSMUSG00000073684.14	ENSMUST00000097747.9	1479	3	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_2	4.5	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTTTGTTTCCTTCATAG	NA	False	NA	5	True	NA	NA	NA	155334459	155341141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155335108_155335212_155335494_155340591
transcript_42397.known	chr4	+	2365	5	FSM	ENSMUSG00000078490.11	ENSMUST00000123952.9	2365	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGATTCTGGTCTGTTGCGT	2332	False	NA	NA	False	NA	NA	NA	155493714	155506449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155494028_155500136_155500223_155503076_155503153_155503303_155503448_155504703
transcript_42398.known	chr4	+	932	5	FSM	ENSMUSG00000023153.10	ENSMUST00000023920.3	932	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0.82915619758885	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCGGTCTTTGCGGAAAGG	161	False	NA	NA	False	AATAAA	-17	NA	155553587	155555314	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155553668_155553759_155553804_155553918_155553961_155554445_155554625_155554727
transcript_42399.known	chr4	+	3131	12	FSM	ENSMUSG00000029064.16	ENSMUST00000030940.14	3131	12	0	0	0	0	multi-exon	FALSE	canonical	3	1763	junction_1	785.626496329864	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGTGTGATGGTTATTT	NA	False	NA	27	True	AATAAA	-19	NA	155575826	155643726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155576038_155600087_155600137_155611869_155611967_155618153_155618193_155619814_155619922_155625012_155625077_155627487_155627651_155636111_155636179_155637774_155637977_155639471_155639689_155641627_155641744_155641927
transcript_424.nnic	chr1	+	1422	4	NNC	ENSMUSG00000025940.7	novel	1710	3	NA	NA	-7	-378	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	240.428783634572	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTAAAATGTGGATGGTC	NA	False	NA	6	True	AATAAA	-17	NA	16735423	16748041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_16735730_16735931_16736092_16737891_16737998_16747191
transcript_42401.known	chr4	+	3152	12	FSM	ENSMUSG00000029063.17	ENSMUST00000105613.10	3152	12	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_7	32.1412173266612	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAGTAACAGCTTTCTTC	9572	False	NA	38	True	AATAAA	-24	NA	155648156	155675458	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
transcript_42405.nic	chr4	+	2912	11	NIC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	-48	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_9	206.213699835874	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGTTAAGTAACAGCTTT	9650	False	NA	34	True	AATAAA	-20	NA	155648234	155675454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_155648437_155661449_155661655_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155673066_155673150_155673784
transcript_42407.nnic	chr4	+	2803	11	NIC	ENSMUSG00000029063.17	novel	3152	12	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_1	208.120662116956	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAGTTAAGTAACAGCTTT	9712	False	NA	34	True	AATAAA	-20	NA	155648296	155675454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_155648437_155663767_155663852_155668593_155668724_155669608_155669718_155669820_155669907_155671185_155671289_155671813_155671954_155672141_155672242_155672317_155672476_155673066_155673150_155673784
transcript_42411.nic	chr4	+	2633	21	NIC	ENSMUSG00000029062.15	novel	2673	20	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	115.97994438695	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	3971	False	NA	23	True	ATTAAA	-28	NA	155709334	155734395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_155709399_155709987_155710112_155710183_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
transcript_42417.known	chr4	+	2595	20	FSM	ENSMUSG00000029062.15	ENSMUST00000067081.10	2595	20	0	0	0	0	multi-exon	TRUE	canonical	3	247	junction_2	74.7943440763884	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	3962	False	NA	23	True	ATTAAA	-28	NA	155709325	155734395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155709399_155709987_155710112_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
transcript_42419.known	chr4	+	2673	20	FSM	ENSMUSG00000029062.15	ENSMUST00000105598.2	2673	20	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	84.1228490935262	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTAACTTGCCTCGTAA	4003	False	NA	23	True	ATTAAA	-28	NA	155709366	155734395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155709399_155709987_155710231_155711230_155711347_155713152_155713281_155714650_155714790_155718545_155718683_155722976_155723100_155724050_155724147_155724233_155724399_155725203_155725270_155725971_155726148_155726941_155727033_155731939_155732062_155732318_155732425_155732739_155732862_155732942_155733051_155733173_155733291_155733468_155733618_155733878_155734069_155734148
transcript_4243.known	chr10	+	1512	10	FSM	ENSMUSG00000020085.16	ENSMUST00000105455.9	1512	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_9	38.6497408676411	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGCTGGAGCTTTTATTTT	NA	False	NA	8	True	AATAAA	-19	NA	61551041	61574432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574177
transcript_42436.nic	chr4	+	440	4	ISM	ENSMUSG00000029062.15	ENSMUST00000067081.10	2595	20	-46	21162	-31	-1564	5prime_fragment	FALSE	canonical	3	247	junction_2	91.0726205959959	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAGAAAAGAGAAACGTC	3916	False	NA	12	True	AAGAAA	-23	NA	155709279	155713233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_155709399_155709987_155710112_155711230_155711347_155713152
transcript_42438.known	chr4	+	2166	9	FSM	ENSMUSG00000042202.16	ENSMUST00000118607.2	2166	9	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_6	4.43705983732471	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCAGATGGTCTGGAGTGC	NA	False	NA	NA	False	NA	NA	NA	155686400	155703776	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155686620_155694295_155694777_155694957_155695094_155696072_155696201_155697073_155697195_155700025_155700080_155700639_155700713_155702071_155702218_155702968
transcript_4244.known	chr10	+	1442	10	FSM	ENSMUSG00000020085.16	ENSMUST00000067857.11	1442	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_9	41.9205597927	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCGATCCTCCTCCTTCG	NA	False	NA	NA	False	AATAAA	-21	NA	61551089	61575039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361_61572538_61574806
transcript_42440.known	chr4	-	1434	8	FSM	ENSMUSG00000029061.3	ENSMUST00000030937.2	1434	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	2.50713268211203	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTGTTGTTTCCTGGG	NA	False	NA	NA	False	GATAAA	-16	NA	155737841	155735111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_155735341_155735463_155735591_155735695_155735807_155735887_155736053_155736441_155736610_155736678_155736819_155736905_155737043_155737484
transcript_42451.known	chr4	-	3642	19	FSM	ENSMUSG00000029060.18	ENSMUST00000103176.10	3642	19	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_12	57.2103817307469	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCTTCCTGTTCCTTGC	7420	False	NA	-5	True	TATAAA	-13	NA	155753655	155739138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_155739451_155739561_155739628_155739708_155739897_155739978_155740158_155740528_155740763_155740850_155740978_155741102_155741264_155741369_155741527_155741622_155741772_155741845_155741980_155742054_155742218_155742311_155742417_155743579_155743723_155743844_155744040_155744134_155744242_155745306_155745479_155745562_155745832_155751470_155751627_155753030
transcript_42456.known	chr4	+	2140	1	FSM	ENSMUSG00000074738.3	ENSMUST00000099265.3	2140	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCACTGTCTTGTGTGT	NA	False	NA	8	True	NA	NA	NA	155778798	155780938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155778800_155780900
transcript_42458.known	chr4	+	1472	5	FSM	ENSMUSG00000029038.10	ENSMUST00000030905.9	1472	5	0	0	0	0	multi-exon	FALSE	canonical	3	1510	junction_4	100.903419169025	559	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTTGGAATTGCCACAAAAT	NA	False	NA	117	True	AATAAA	-33	NA	155789256	155818336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383_155816503_155817929
transcript_42462.known	chr4	+	874	4	FSM	ENSMUSG00000029038.10	ENSMUST00000105595.2	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	1675	junction_1	40.2685430026411	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGACCAAATGCTTTGGCT	NA	False	NA	NA	False	AGTAAA	-26	NA	155789591	155816646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155789919_155799918_155800063_155815781_155815922_155816383
transcript_42466.known	chr4	+	1555	2	FSM	ENSMUSG00000029038.10	ENSMUST00000140322.2	1555	2	0	0	0	0	multi-exon	FALSE	canonical	3	1675	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTGTGGGGAAAGACAG	NA	False	NA	NA	False	AGTAAA	-22	NA	155789580	155801135	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155789919_155799918
transcript_42472.known	chr4	-	2413	16	FSM	ENSMUSG00000029036.19	ENSMUST00000030903.12	2413	16	0	0	0	0	multi-exon	FALSE	canonical	3	684	junction_5	53.203759265676	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGCTTGATGGCTGAGG	NA	False	NA	-9	True	AATAAA	-19	NA	155845550	155825097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_155825810_155830485_155830595_155831770_155831939_155833127_155833199_155833613_155833666_155834588_155834714_155834929_155835056_155835324_155835382_155835893_155836050_155838023_155838094_155838338_155838505_155839213_155839284_155840135_155840196_155840517_155840620_155841548_155841626_155845258
transcript_4248.known	chr10	+	3086	9	FSM	ENSMUSG00000020085.16	ENSMUST00000099706.9	3086	9	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	25.5706741209535	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAAGACGCTGGAGCTTT	NA	False	NA	2	True	AATAAA	-13	NA	61551101	61574426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907_61564001_61568101_61568211_61570055_61570209_61571236_61571438_61572361
transcript_42483.known	chr4	+	494	3	FSM	ENSMUSG00000029066.13	ENSMUST00000185148.8	494	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	616.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGATTGTATAAATAAAGCCT	NA	False	NA	-11	True	NA	NA	NA	155888103	155893255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155888200_155891364_155891443_155892935
transcript_42484.known	chr4	+	764	4	FSM	ENSMUSG00000029066.13	ENSMUST00000030942.13	764	4	0	0	0	0	multi-exon	FALSE	canonical	3	1236	junction_3	66.873013989202	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGAGTTATTTCCTGGC	NA	False	NA	22	True	AATAAA	-18	NA	155887977	155893288	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155888200_155888289_155888401_155891364_155891443_155892935
transcript_42485.known	chr4	+	579	3	FSM	ENSMUSG00000029066.13	ENSMUST00000143503.2	579	3	0	0	0	0	multi-exon	FALSE	canonical	3	1236	junction_2	81	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAGATTGTATAAATAAA	NA	False	NA	-15	True	NA	NA	NA	155888215	155893251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155888401_155891364_155891443_155892935
transcript_42486.known	chr4	+	810	5	FSM	ENSMUSG00000029066.13	ENSMUST00000137487.9	810	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	575.364884225654	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACATCCTGAAGTTATT	NA	False	NA	NA	False	NA	NA	NA	155888106	155894432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155888200_155888289_155888401_155891364_155891443_155892935_155893166_155894134
transcript_42488.nnic	chr4	+	2257	12	NNC	ENSMUSG00000029068.17	novel	4220	11	NA	NA	1	54	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_6	303.907880779686	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTTGTGGGCTGTCATTC	4638	False	NA	22	True	AATAAA	-27	NA	155896958	155908814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995_155903010_155904785_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
transcript_4249.known	chr10	-	2175	9	FSM	ENSMUSG00000020086.7	ENSMUST00000020283.5	2175	9	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_7	26.0813031691286	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCAGCGTCTTTCTTATA	NA	False	NA	-26	True	NA	NA	NA	61619926	61574443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_61575242_61576913_61577089_61582411_61582502_61583450_61583551_61585054_61585166_61587455_61587654_61589240_61589348_61593502_61593734_61619561
transcript_42492.known	chr4	+	4220	11	FSM	ENSMUSG00000029068.17	ENSMUST00000139066.8	4220	11	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_8	224.905068862398	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGCTCTGTGCCATCCT	4637	False	NA	NA	False	ATTAAA	-15	NA	155896957	155909000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
transcript_42493.known	chr4	+	2442	11	FSM	ENSMUSG00000029068.17	ENSMUST00000030944.11	2442	11	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_8	247.410205933385	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGCTCTGTGCCATCCT	4625	False	NA	NA	False	ATTAAA	-15	NA	155896945	155909000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155904785_155904886_155905240_155905346_155905429_155905572_155906268_155906378_155906461_155906555_155907799
transcript_42497.nic	chr4	+	1035	6	ISM	ENSMUSG00000029068.17	ENSMUST00000139066.8	4220	11	-52	5702	-40	2983	5prime_fragment	FALSE	canonical	3	604	junction_5	178.167786089405	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTTTTTGTTTTAAAAAAAA	4585	False	NA	15	True	AATAAA	-15	NA	155896905	155903298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995
transcript_42498.nic	chr4	+	1285	6	ISM	ENSMUSG00000029068.17	ENSMUST00000139066.8	4220	11	1	5399	1	-2728	5prime_fragment	FALSE	canonical	3	604	junction_5	178.167786089405	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTGATGGTTGTGTTTC	4638	False	NA	NA	False	AATATA	-34	NA	155896958	155903601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995
transcript_4250.nic	chr10	+	721	5	ISM	ENSMUSG00000020085.16	ENSMUST00000105455.9	1512	10	-12	10341	-12	391	5prime_fragment	FALSE	canonical	3	116	junction_1	28.6050694807756	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTTGTTTGATTGTTTA	NA	False	NA	NA	False	AAAAAG	-15	NA	61551029	61564091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_61551132_61561634_61561834_61562143_61562260_61563425_61563546_61563907
transcript_42500.nic	chr4	+	2257	6	ISM	ENSMUSG00000029068.17	ENSMUST00000139066.8	4220	11	13	4415	-5	-1744	5prime_fragment	FALSE	canonical	3	604	junction_5	178.167786089405	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTCTGACATTCAGCCA	4650	False	NA	NA	False	AGTAAA	-28	NA	155896970	155904585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_155897267_155897624_155897700_155897915_155898026_155899699_155899821_155902379_155902445_155902995
transcript_42508.known	chr4	+	1159	4	FSM	ENSMUSG00000065990.13	ENSMUST00000084097.12	1159	4	0	0	0	0	multi-exon	FALSE	canonical	3	1785	junction_1	303.738191357111	1331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGGAACCCAGGGCCCAAG	NA	False	NA	96	True	AAAAAG	-9	NA	155915807	155917587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155916193_155916439_155916528_155916808_155917255_155917347
transcript_42511.nnic	chr4	+	1027	4	NIC	ENSMUSG00000065990.13	novel	773	4	NA	NA	-84	0	combination_of_known_splicesites	FALSE	canonical	3	64	junction_1	1112.8534894086	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTAGGCCGACCTAGA	NA	False	NA	27	True	AATAAA	-17	NA	155915991	155917518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_155916224_155916349_155916528_155916808_155917255_155917347
transcript_42513.known	chr4	+	773	4	FSM	ENSMUSG00000065990.13	ENSMUST00000105591.2	773	4	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_1	1010.64072086309	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCACTATAATAAATATTGG	NA	False	NA	-3	True	NA	NA	NA	155916125	155917488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155916224_155916439_155916528_155916808_155917255_155917347
transcript_42516.nic	chr4	+	992	4	NIC	ENSMUSG00000065990.13	novel	1159	4	NA	NA	-80	0	combination_of_known_junctions	FALSE	canonical	3	91	junction_1	1100.13494121807	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTAGGCCGACCTAGA	NA	False	NA	27	True	AATAAA	-17	NA	155915995	155917518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_155916193_155916349_155916528_155916808_155917255_155917347
transcript_42522.known	chr4	+	600	2	FSM	ENSMUSG00000065990.13	ENSMUST00000151222.2	600	2	0	0	0	0	multi-exon	FALSE	canonical	3	1785	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAGTCAGAGCTTGAGGAG	NA	False	NA	NA	False	NA	NA	NA	155916075	155916922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155916193_155916439
transcript_42523.known	chr4	+	1029	3	FSM	ENSMUSG00000065990.13	ENSMUST00000105592.8	1029	3	0	0	0	0	multi-exon	FALSE	canonical	3	2371	junction_1	52	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTCTAGGCCGACCTAGA	NA	False	NA	27	True	AATAAA	-17	NA	155916115	155917518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155916528_155916808_155917255_155917347
transcript_42524.known	chr4	+	2203	10	FSM	ENSMUSG00000029070.10	ENSMUST00000030947.4	2203	10	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_3	12.5648932828686	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAGTCTTGGACCTGCT	NA	False	NA	12	True	AATAAA	-13	NA	155924182	155928545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155924348_155925234_155925256_155925362_155925666_155925901_155926004_155926118_155926590_155927013_155927173_155927249_155927290_155927361_155927439_155927515_155927597_155927761
transcript_42526.nic	chr4	+	1760	7	ISM	ENSMUSG00000029070.10	ENSMUST00000030947.4	2203	10	1673	0	-905	0	3prime_fragment	FALSE	canonical	3	23	junction_2	4.10960933531265	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTAGTCTTGGACCTGCT	NA	False	NA	12	True	AATAAA	-13	NA	155925855	155928545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_+_155926004_155926118_155926590_155927013_155927173_155927249_155927290_155927361_155927439_155927515_155927597_155927761
transcript_42529.known	chr4	-	2662	3	FSM	ENSMUSG00000029073.10	ENSMUST00000030950.8	2662	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	2.5	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACAGATCCATGTGTACAT	NA	False	NA	NA	False	AGTAAA	-27	NA	155953897	155949179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_155951343_155951569_155951795_155953623
transcript_4253.nnic	chr10	+	687	4	Antisense	novelGene_ENSMUSG00000058806.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_3	26.9608770051883	29	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGTTTCATTGCTACTTCA	NA	False	NA	19	True	NA	NA	NA	61670291	61710016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr10_+_61670501_61698165_61698280_61709460_61709561_61709752
transcript_42531.known	chr4	+	2368	17	FSM	ENSMUSG00000029034.10	ENSMUST00000030901.9	2368	17	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_2	75.0722308430354	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCACTGTGTACCGTCA	9960	False	NA	21	True	AATAAA	-21	NA	155954002	155973560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971979_155972061_155972225_155972311_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
transcript_42535.nnic	chr4	+	1874	16	NNC	ENSMUSG00000029034.10	novel	2368	17	NA	NA	0	136	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_11	247.894457828775	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTTTATTCCTACTCTC	9960	False	NA	32	True	AATAAA	-20	NA	155954002	155973326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_155954178_155956583_155956682_155957306_155957381_155959594_155959824_155969554_155969654_155969743_155969779_155970021_155970161_155970548_155970614_155971254_155971445_155971572_155971657_155971888_155971934_155972363_155972420_155972504_155972567_155972640_155972784_155972852_155972983_155973076
transcript_42547.known	chr4	-	1243	8	FSM	ENSMUSG00000051557.16	ENSMUST00000097737.5	1243	8	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_3	43.9103911276089	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGTCTGTTTATTACT	9080	False	NA	NA	False	AATAAA	-14	NA	155976238	155973318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_155973626_155973890_155974054_155974125_155974181_155974955_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
transcript_4255.nnic	chr10	+	849	4	Antisense	novelGene_ENSMUSG00000058806.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	19	junction_1	9.03081145609604	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTGGTGGCACACACCTTT	NA	False	NA	NA	False	NA	NA	NA	61751882	61768390	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr10_+_61752029_61767321_61767485_61767595_61767722_61767976
transcript_42552.nnic	chr4	-	1442	8	NNC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_3	118.182321962677	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGTCTGTTTATTACT	9064	False	NA	NA	False	AATAAA	-14	NA	155976254	155973318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_-_155973626_155973890_155974054_155974125_155974364_155974955_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
transcript_42561.nic	chr4	-	2034	7	NIC	ENSMUSG00000051557.16	novel	1243	8	NA	NA	-16	0	intron_retention	FALSE	canonical	3	293	junction_5	37.4985184892535	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGTCTGTTTATTACT	9064	False	NA	NA	False	AATAAA	-14	NA	155976254	155973318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_-_155973626_155973890_155974054_155974125_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
transcript_42570.nic	chr4	-	853	5	ISM	ENSMUSG00000051557.16	ENSMUST00000097737.5	1243	8	-16	1518	-16	0	5prime_fragment	FALSE	canonical	3	293	junction_3	44.5954033505697	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGTGTAAGAAGGTGAGCCA	9064	False	NA	NA	False	NA	NA	NA	155976254	155974836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr4_-_155975127_155975209_155975360_155975508_155975697_155975814_155975873_155976087
transcript_42574.known	chr4	+	1434	8	FSM	ENSMUSG00000023286.17	ENSMUST00000105583.9	1434	8	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_1	334.708584793838	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTCTGTGTGTGTTCT	795	False	NA	34	True	TATAAA	-16	NA	156028325	156042168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_156028471_156030711_156030875_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
transcript_42576.known	chr4	+	1309	7	FSM	ENSMUSG00000023286.17	ENSMUST00000103175.8	1309	7	0	0	0	0	multi-exon	FALSE	canonical	3	344	junction_1	275.8918870379	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATACTCTGTGTGTGTTCT	757	False	NA	34	True	TATAAA	-16	NA	156028287	156042168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_156028471_156033463_156033595_156035928_156035970_156039690_156039794_156039878_156040018_156040824_156040906_156041537
transcript_4258.nnic	chr10	+	572	3	Antisense	novelGene_ENSMUSG00000058806.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	26	junction_2	20	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCCAACTGTAAAATGAGT	NA	False	NA	4	True	NA	NA	NA	61670291	61710001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr10_+_61670501_61698165_61698280_61709752
transcript_42580.known	chr4	+	1315	8	FSM	ENSMUSG00000023571.5	ENSMUST00000024338.5	1315	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	2.37332110369088	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGGTGCACTCTGCTTAT	NA	False	NA	10	True	AATAAA	-24	NA	156046774	156051086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_156047195_156048999_156049117_156049224_156049346_156049436_156049589_156050050_156050160_156050322_156050414_156050538_156050618_156050860
transcript_42585.known	chr4	+	1670	8	FSM	ENSMUSG00000029076.15	ENSMUST00000105579.8	1670	8	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	241.738769445576	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCCTCTCCAGCATGTG	NA	False	NA	28	True	ATTAAA	-19	NA	156077328	156094667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_156077464_156077609_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
transcript_42586.nnic	chr4	+	1808	8	NNC	ENSMUSG00000029076.15	novel	1670	8	NA	NA	-62	0	intron_retention	FALSE	non_canonical	0	0	junction_1	254.552749034098	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCCTCTCCAGCATGTG	NA	False	NA	28	True	ATTAAA	-19	NA	156077266	156094667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_156077289_156077358_156077792_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
transcript_42589.known	chr4	+	1654	7	FSM	ENSMUSG00000029076.15	ENSMUST00000105578.2	1654	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	268.571995313485	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTGCTTGGGATGGTTG	NA	False	NA	136	True	NA	NA	NA	156077833	156094775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_156078027_156080645_156080976_156083854_156083992_156085126_156085241_156093243_156093403_156093600_156093777_156094230
transcript_42590.known	chr4	+	1189	5	FSM	ENSMUSG00000041954.19	ENSMUST00000103173.10	1189	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTGTGTCCTAAGGAC	587	False	NA	NA	False	AATAAA	-19	NA	156110620	156113352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_156110995_156111772_156111896_156112418_156112507_156112677_156112881_156112951
transcript_42591.nnic	chr4	+	2706	11	NNC	ENSMUSG00000059939.14	novel	2528	10	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	1	9	junction_3	73.1142257019795	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8230	False	NA	22	True	NA	NA	NA	156194413	156211722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr4_+_156194481_156198345_156198459_156201152_156201306_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
transcript_42596.known	chr4	+	2528	10	FSM	ENSMUSG00000059939.14	ENSMUST00000072554.13	2528	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_5	55.1321644374276	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8255	False	NA	22	True	NA	NA	NA	156194438	156211722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
transcript_426.known	chr1	+	1710	3	FSM	ENSMUSG00000025940.7	ENSMUST00000065373.6	1710	3	0	0	0	0	multi-exon	FALSE	canonical	3	512	junction_1	10.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGAGTGTTTTGTTTGCCTC	NA	False	NA	22	True	ATTAAA	-12	NA	16735433	16748499	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_16735730_16737891_16737998_16747191
transcript_42601.known	chr4	+	2660	10	FSM	ENSMUSG00000059939.14	ENSMUST00000169550.8	2660	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_5	55.5417760689095	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTTGTTGAGGTCATGATG	8271	False	NA	20	True	NA	NA	NA	156194454	156211720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
transcript_42605.nic	chr4	+	2643	9	NIC	ENSMUSG00000059939.14	novel	2528	10	NA	NA	-25	0	intron_retention	FALSE	canonical	3	69	junction_5	54.3310166939659	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8230	False	NA	22	True	NA	NA	NA	156194413	156211722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208580_156209873
transcript_42609.nic	chr4	+	2457	9	NIC	ENSMUSG00000059939.14	novel	2528	10	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_4	67.7595703572565	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8230	False	NA	22	True	NA	NA	NA	156194413	156211722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206807_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
transcript_42611.nic	chr4	+	2755	9	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	-3	0	intron_retention	FALSE	canonical	3	69	junction_5	54.8475158963467	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8268	False	NA	22	True	NA	NA	NA	156194451	156211722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206486_156206807_156206874_156207991_156208127_156208432_156208580_156209873
transcript_42613.nic	chr4	+	2987	9	NIC	ENSMUSG00000059939.14	novel	2660	10	NA	NA	-3	0	intron_retention	FALSE	canonical	3	85	junction_1	49.4621067080649	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8268	False	NA	22	True	NA	NA	NA	156194451	156211722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr4_+_156194631_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208459_156208548_156208580_156209873
transcript_42615.known	chr4	+	2937	8	FSM	ENSMUSG00000059939.14	ENSMUST00000125786.8	2937	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	44.3313129302804	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTTGAGGTCATGATGTC	8258	False	NA	22	True	NA	NA	NA	156194441	156211722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_+_156194481_156198345_156198459_156201466_156201561_156203620_156203697_156206389_156206874_156207991_156208127_156208432_156208580_156209873
transcript_42620.known	chr4	-	7193	35	FSM	ENSMUSG00000041936.19	ENSMUST00000105574.9	7193	35	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_34	105.5815498457	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGACTGTGTTTGTACTT	NA	False	NA	-21	True	AATAAA	-18	NA	156270358	156249746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_156251111_156251367_156251472_156251738_156251964_156253189_156253278_156253359_156253553_156253676_156253794_156254226_156254339_156254522_156254688_156254771_156254869_156255035_156255171_156255257_156255488_156255858_156256075_156256244_156256438_156256531_156256880_156257018_156257139_156257224_156257340_156257459_156257588_156257999_156258138_156258241_156258548_156258633_156258740_156258812_156258938_156259027_156259172_156259312_156259478_156259556_156259674_156260675_156260782_156260860_156261010_156261090_156261292_156261412_156261608_156261679_156261899_156262885_156263093_156263239_156263465_156263554_156263780_156263849_156264066_156269544_156269593_156270007
transcript_42621.known	chr4	-	2004	16	FSM	ENSMUSG00000078485.5	ENSMUST00000105571.4	2004	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5.72479985094093	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGGTCAAGGTTGTCTCT	NA	False	NA	-6	True	ATTAAA	-20	NA	156312999	156306118	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr4_-_156306340_156306424_156306474_156306707_156306939_156307096_156307238_156307397_156307539_156307754_156307896_156308022_156308172_156308313_156308390_156308994_156309076_156309181_156309296_156309373_156309499_156309651_156309725_156309804_156309886_156309982_156310130_156312673_156312774_156312865
transcript_42623.known	chr5	+	438	1	FSM	ENSMUSG00000062353.7	ENSMUST00000118533.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6131	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACATCCCATGCACGGCTT	NA	False	NA	NA	False	AATACA	-33	NA	3286430	3286868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_3286400_3286900
transcript_42624.nic	chr5	+	1578	8	NIC	ENSMUSG00000040274.12	novel	2470	7	NA	NA	-63	-1238	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	16.8861735494711	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGTTTGTACACTTGTT	NA	False	NA	-63	True	NA	NA	NA	3391421	3570987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_3391575_3394118_3394600_3440680_3440817_3478990_3479159_3523118_3523229_3565453_3565505_3569358_3569495_3570644
transcript_42625.nic	chr5	+	1660	8	NIC	ENSMUSG00000040274.12	novel	2470	7	NA	NA	-63	-1156	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	16.8861735494711	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGCTGCCATTTCGTTTT	NA	False	NA	19	True	NA	NA	NA	3391421	3571069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_3391575_3394118_3394600_3440680_3440817_3478990_3479159_3523118_3523229_3565453_3565505_3569358_3569495_3570644
transcript_42626.known	chr5	+	11525	8	FSM	ENSMUSG00000040274.12	ENSMUST00000165117.8	11525	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	33.2627143099493	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCGATTTCAGACTCCTTC	NA	False	NA	NA	False	AATAAA	-22	NA	3393892	3581008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_3393972_3394118_3394600_3440680_3440817_3478990_3479159_3523118_3523229_3565453_3565505_3569358_3569495_3570644
transcript_4263.known	chr10	-	1769	4	FSM	ENSMUSG00000020083.14	ENSMUST00000125704.8	1769	4	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	8.33999733546454	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCAGATCTTGAATTCG	NA	False	NA	NA	False	NA	NA	NA	61946829	61943433	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_61944903_61945662_61945792_61946014_61946094_61946737
transcript_42630.known	chr5	+	1491	11	FSM	ENSMUSG00000058503.12	ENSMUST00000115527.8	1491	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	59.9796632201282	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCATGAGAAAGCCCCCAA	NA	False	NA	NA	False	AATGAA	-22	NA	3593837	3619740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609096_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
transcript_42631.known	chr5	+	1450	11	FSM	ENSMUSG00000058503.12	ENSMUST00000199666.5	1450	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	76.7604064606227	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAGCATGAGAAAGCCCCCAA	NA	False	NA	NA	False	AATGAA	-22	NA	3593837	3619740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609137_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
transcript_42632.known	chr5	+	1961	10	FSM	ENSMUSG00000058503.12	ENSMUST00000196059.5	1961	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	63.1977105383095	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTTGTGTCATTTGAAT	NA	False	NA	NA	False	NA	NA	NA	3593843	3619813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3609160_3609605_3609699_3611038_3611090_3614240_3614328_3615702_3615751_3618986
transcript_42634.nic	chr5	+	716	9	ISM	ENSMUSG00000058503.12	ENSMUST00000115527.8	1491	11	-24	5410	-19	-387	5prime_fragment	FALSE	canonical	3	156	junction_4	20.3346994076628	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAAAACAAGCAGTGCTT	NA	False	NA	NA	False	NA	NA	NA	3593813	3614330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609096_3609160_3609605_3609699_3611038_3611090_3614240
transcript_42639.nic	chr5	+	482	6	ISM	ENSMUSG00000058503.12	ENSMUST00000115527.8	1491	11	-24	10581	-19	-1887	5prime_fragment	FALSE	canonical	3	156	junction_4	23.7991596490296	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGCTTGCTGTGATGCT	NA	False	NA	NA	False	NA	NA	NA	3593813	3609159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660_3608694_3609096
transcript_42640.known	chr5	+	2750	5	FSM	ENSMUSG00000058503.12	ENSMUST00000198598.5	2750	5	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	22.642603648874	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAGAAAAAGAAGTCCA	NA	False	NA	NA	False	TTTAAA	-29	NA	3593835	3611046	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472_3608548_3608660
transcript_42641.nic	chr5	+	386	4	ISM	ENSMUSG00000058503.12	ENSMUST00000198598.5	2750	5	-22	2499	-19	-2499	5prime_fragment	FALSE	canonical	3	196	junction_3	8.17856276425687	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACACCACTTTCTGTTTA	NA	False	NA	6	True	AAAAAG	-5	NA	3593813	3608547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_3593948_3604638_3604737_3607743_3607823_3608472
transcript_42642.known	chr5	+	4555	24	FSM	ENSMUSG00000005907.15	ENSMUST00000121291.8	4555	24	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_8	11.5830199691965	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTGTTTGTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	3646065	3687232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_3646518_3653231_3653376_3654795_3654880_3655433_3655549_3655646_3656411_3657666_3657787_3659853_3659978_3660178_3660289_3662880_3662964_3665074_3665208_3668816_3668914_3670594_3670766_3672232_3672388_3673940_3674131_3674419_3674587_3675999_3676135_3677517_3677583_3679969_3680113_3680188_3680293_3681588_3681766_3683715_3683947_3685314_3685513_3685779_3685911_3686770
transcript_42645.known	chr5	-	2545	5	FSM	ENSMUSG00000007415.16	ENSMUST00000007559.15	2545	5	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_1	62.6592969957372	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTATTTTGGATTTTTAA	NA	False	NA	52	True	ATTAAA	-17	NA	3697934	3689960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_3691581_3693557_3693742_3694880_3694941_3696783_3696910_3697379
transcript_42648.known	chr5	-	1278	4	FSM	ENSMUSG00000007415.16	ENSMUST00000119783.2	1278	4	0	0	0	0	multi-exon	FALSE	canonical	3	421	junction_2	22.2910046630673	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATGTTACTTTATGCAT	NA	False	NA	-8	True	NA	NA	NA	3697806	3693076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_3693742_3694880_3694941_3696783_3696910_3697379
transcript_42650.known	chr5	-	2368	5	FSM	ENSMUSG00000040302.18	ENSMUST00000042753.14	2368	5	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_2	28.3813318926368	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGCTATCTGCGTGTC	1474	False	NA	-9	True	AATAAA	-21	NA	3646585	3633977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_3634808_3640222_3640804_3641669_3641816_3645254_3645446_3645965
transcript_42651.nnic	chr5	-	1208	5	NNC	ENSMUSG00000040351.12	novel	2572	19	NA	NA	-31041	11532	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_4	33.9742549587184	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTGGAATTTTTTTCA	NA	False	NA	NA	False	ATTAAA	-16	NA	3783173	3772147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_3772635_3777488_3777656_3779634_3779780_3782539_3782629_3782853
transcript_42653.nic	chr5	+	2999	17	NIC	ENSMUSG00000000600.16	novel	2930	17	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	59.7316590574044	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTATTTAAACCATTTC	7962	False	NA	10	True	AATAAA	-23	NA	3853160	3891359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_3853484_3856418_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
transcript_42654.nic	chr5	+	3098	17	NIC	ENSMUSG00000000600.16	novel	2930	17	NA	NA	-23	99	combination_of_known_junctions	FALSE	canonical	0	0	junction_16	59.7316590574044	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCATCGGTCCTAGTGTCTT	7962	False	NA	22	True	ATTAAA	-29	NA	3853160	3891458	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_3853484_3856418_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
transcript_42655.known	chr5	+	2930	17	FSM	ENSMUSG00000000600.16	ENSMUST00000080085.9	2930	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	61.5435567301728	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTATTATTTAAACCATTTC	7985	False	NA	10	True	AATAAA	-23	NA	3853183	3891359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_3853484_3856464_3856569_3857298_3857459_3859635_3859729_3861255_3861386_3862331_3862576_3862741_3862858_3863050_3863195_3868526_3868684_3869309_3869418_3872086_3872244_3873633_3873786_3880605_3880773_3881495_3881584_3882019_3882227_3886777_3886895_3890873
transcript_4266.known	chr10	-	1135	3	FSM	ENSMUSG00000020083.14	ENSMUST00000142796.8	1135	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	41.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCCGGTGAATGACTGAC	NA	False	NA	-10	True	AATAAA	-21	NA	61946829	61943988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_61944903_61945662_61945792_61946737
transcript_42663.known	chr5	-	1376	2	FSM	ENSMUSG00000040429.7	ENSMUST00000044746.5	1376	2	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_1	0	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTATTTTGTATGTATTT	NA	False	NA	NA	False	AATAAA	-23	NA	3943933	3940580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_3941898_3943874
transcript_42664.known	chr5	+	2010	8	FSM	ENSMUSG00000040407.19	ENSMUST00000143365.8	2010	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	6.1145527311522	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAGAAAAAAATGCTG	NA	False	NA	NA	False	AATAAA	-13	NA	3978177	4010989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_3978491_3998680_3998897_4001689_4001735_4004396_4004451_4004791_4004963_4006156_4006313_4007623_4007801_4010111
transcript_42667.known	chr5	+	13123	48	FSM	ENSMUSG00000040407.19	ENSMUST00000044492.10	13123	48	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_3	16.8799451617757	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAACAAACAGTCTTCAAA	NA	False	NA	NA	False	AATAAA	-39	NA	3978273	4131310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_3978491_3998680_3998897_4001689_4001735_4004791_4004963_4006156_4006313_4007623_4007801_4010111_4012458_4018579_4018794_4020663_4020738_4021901_4022038_4022755_4022842_4025598_4025711_4026127_4026327_4031117_4031215_4042045_4042139_4051404_4051759_4053560_4053783_4054802_4054944_4055409_4055514_4058343_4058550_4063849_4064080_4078373_4078537_4079839_4080053_4082680_4082914_4084747_4084868_4088528_4088706_4089238_4089344_4093917_4094071_4094798_4094979_4095897_4096942_4100154_4100644_4101035_4101100_4101209_4101311_4105160_4105353_4105591_4105769_4108435_4108581_4110281_4110496_4111137_4111289_4114070_4114740_4115180_4115387_4115804_4115911_4117739_4117923_4119006_4119208_4120298_4120532_4122614_4122701_4127185_4127316_4127827_4127968_4129658
transcript_4267.known	chr10	-	3638	8	FSM	ENSMUSG00000037031.11	ENSMUST00000047883.11	3638	8	0	0	0	0	multi-exon	TRUE	canonical	3	242	junction_7	11.6303613925986	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTCTGGTGTTTTATCA	4876	False	NA	NA	False	NA	NA	NA	62067030	62021174	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62023942_62024421_62024539_62025592_62025641_62027246_62027364_62029645_62029742_62037556_62037632_62038858_62039045_62066798
transcript_42672.known	chr5	-	3931	10	FSM	ENSMUSG00000001467.6	ENSMUST00000001507.5	3931	10	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_6	50.6347365275053	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAGATTTTCTTTGCCAAT	NA	False	NA	-22	True	ATTAAA	-22	NA	4154746	4131144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_4133304_4136459_4136629_4137777_4137874_4141844_4142041_4142387_4142508_4149123_4149299_4150144_4150272_4151177_4151355_4152927_4153027_4154133
transcript_42677.known	chr5	-	693	3	FSM	ENSMUSG00000001467.6	ENSMUST00000199909.2	693	3	0	0	0	0	multi-exon	FALSE	canonical	3	676	junction_2	72	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACTTGGAAAGAAACCATG	NA	False	NA	NA	False	AAGAAA	-15	NA	4154421	4151048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_4151355_4152927_4153027_4154133
transcript_42679.known	chr5	+	1368	2	FSM	ENSMUSG00000053178.6	ENSMUST00000177258.2	1368	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTTATTTTGTATGTATT	NA	False	NA	NA	False	AATAAA	-22	NA	4242366	4247651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_4242419_4246335
transcript_4268.known	chr10	-	4278	18	FSM	ENSMUSG00000037012.19	ENSMUST00000099691.11	4278	18	0	0	0	0	multi-exon	FALSE	canonical	3	414	junction_15	35.8424078528779	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTGGTTCAGACAAGGG	NA	False	NA	NA	False	AATAAA	-19	NA	62176321	62104633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62105836_62107367_62107602_62110225_62110382_62111459_62111644_62116811_62116912_62117589_62117686_62120057_62120178_62120479_62120629_62122126_62122432_62125938_62126173_62128092_62128249_62131481_62131666_62131774_62131875_62132455_62132552_62134928_62135049_62140498_62140648_62151164_62151328_62175791
transcript_42680.known	chr5	-	3597	4	FSM	ENSMUSG00000046798.15	ENSMUST00000060947.14	3597	4	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	5.18544972870135	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCTCTGTCCTTTTCT	NA	False	NA	-3	True	ATTAAA	-17	NA	5564873	5555108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_5558455_5561070_5561123_5563161_5563252_5564764
transcript_42682.nnic	chr5	-	3036	10	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	83.4476253277438	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGTTTCTGTTCCTAATG	NA	False	NA	NA	False	GATAAA	-19	NA	5609547	5587453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_5589452_5592246_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
transcript_42683.known	chr5	-	2972	10	FSM	ENSMUSG00000040464.16	ENSMUST00000115441.9	2972	10	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_5	43.7924397331066	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTAGTTTCTGTTCCTAATG	NA	False	NA	NA	False	GATAAA	-19	NA	5609538	5587453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_5589452_5592301_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
transcript_42686.nnic	chr5	-	1680	10	NNC	ENSMUSG00000040464.16	novel	2972	10	NA	NA	-9	423	at_least_one_novel_splicesite	FALSE	canonical	3	36	junction_1	83.4476253277438	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTTGACTCTGTTTTAAAA	NA	False	NA	NA	False	AATATA	-13	NA	5609547	5588809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_5589452_5592246_5592426_5593290_5593369_5594065_5594174_5596352_5596406_5597926_5598001_5605237_5605383_5606064_5606157_5607212_5607407_5609432
transcript_42691.known	chr5	-	4956	23	FSM	ENSMUSG00000040473.16	ENSMUST00000054865.13	4956	23	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_19	2.58132197536376	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCTGGTTTTATTACTCC	NA	False	NA	NA	False	AATAAA	-22	NA	5714239	5629277	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_5631367_5631903_5632009_5632441_5632529_5634650_5634849_5636355_5636433_5637140_5637279_5639119_5639313_5643771_5643854_5645920_5646040_5654273_5654393_5663685_5663851_5667168_5667386_5668947_5669070_5669166_5669216_5671919_5672044_5675749_5675928_5676008_5676159_5690128_5690228_5694423_5694501_5696935_5697046_5699789_5699856_5707787_5707848_5713907
transcript_42695.known	chr5	-	10408	6	FSM	ENSMUSG00000015653.14	ENSMUST00000115426.9	10408	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	11.3384302264467	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAATTACAAAACTGG	4773	False	NA	NA	False	AATAAA	-17	NA	5744578	5714828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_5723697_5725840_5726006_5727316_5727845_5732533_5733056_5733291_5733418_5744379
transcript_42696.known	chr5	-	1230	5	FSM	ENSMUSG00000015652.10	ENSMUST00000015796.9	1230	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	6.38357266740185	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTATCACAACTGTTTA	NA	False	NA	NA	False	AATAAA	-26	NA	5799326	5786316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_5786674_5789795_5789961_5790349_5790863_5792825_5792941_5799246
transcript_42697.nnic	chr5	-	1165	4	NIC	ENSMUSG00000015652.10	novel	1230	5	NA	NA	-50	0	combination_of_known_splicesites	FALSE	canonical	2	7	junction_3	12.684198393627	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGTATCACAACTGTTTA	NA	False	NA	NA	False	AATAAA	-26	NA	5799376	5786316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_5786674_5789795_5789961_5790349_5790863_5799246
transcript_42698.nnic	chr5	-	748	2	Genic_Genomic	ENSMUSG00000100801.2	novel	1941	1	NA	NA	-81	100	multi-exon	FALSE	canonical	3	192	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	20	True	AATAAA	-34	NA	5833636	5831514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr5_-_5832082_5833455
transcript_42699.nnic	chr5	+	2030	2	Antisense	novelGene_ENSMUSG00000100801.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACATTTTCTTTTGTGTC	NA	False	NA	NA	False	NA	NA	NA	5831514	5833636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr5_+_5833460_5833551
transcript_42701.known	chr5	-	1941	1	FSM	ENSMUSG00000100801.2	ENSMUST00000117405.2	1941	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGTCCAAGAAGAAGGTG	NA	False	NA	-80	True	NA	NA	NA	5833555	5831614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_5831600_5833600
transcript_42702.known	chr5	+	2251	8	FSM	ENSMUSG00000003161.16	ENSMUST00000148633.4	2251	8	0	0	0	0	multi-exon	FALSE	canonical	3	434	junction_5	36.6795277382635	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATAAACATTCCATAAGCA	NA	False	NA	-16	True	AGTAAA	-21	NA	8106526	8119151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_8106640_8107537_8107622_8109352_8109423_8112383_8112428_8113259_8113408_8113636_8113751_8114557_8114617_8117532
transcript_42706.known	chr5	-	2402	12	FSM	ENSMUSG00000002297.17	ENSMUST00000171808.8	2402	12	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_3	47.2513937876549	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTCCTGAGAATAAAAATGAA	NA	False	NA	NA	False	AATAAA	-22	NA	8472716	8447010	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_8448163_8449687_8449813_8453079_8453192_8453611_8453741_8454870_8454917_8455801_8455839_8458233_8458311_8458493_8458564_8460009_8460061_8462120_8462301_8471220_8471394_8472466
transcript_42707.known	chr5	-	2509	10	FSM	ENSMUSG00000002297.17	ENSMUST00000166364.8	2509	10	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_1	51.6858984517579	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCGTTGTCTAGTTGTATTG	NA	False	NA	NA	False	TATAAA	-4	NA	8472681	8451660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_8453192_8453611_8453741_8454870_8454917_8455801_8455839_8458233_8458311_8458493_8458564_8460009_8460061_8462120_8462301_8471220_8471394_8472466
transcript_42709.nic	chr5	+	2887	13	NIC	ENSMUSG00000054099.12	novel	2784	12	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	13.6829171678492	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATTTGTGATTTGTAG	NA	False	NA	NA	False	ATTAAA	-18	NA	8472837	8504797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_8473040_8474796_8474888_8477195_8477268_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
transcript_4271.known	chr10	+	522	2	FSM	ENSMUSG00000085347.2	ENSMUST00000123457.2	522	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTGCCCTGTGCCCCAAA	NA	False	NA	NA	False	NA	NA	NA	62176034	62185630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_62176192_62185265
transcript_42710.known	chr5	+	2784	12	FSM	ENSMUSG00000054099.12	ENSMUST00000066921.10	2784	12	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	8.37055050175789	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTATTTGTGATTTGTAG	NA	False	NA	NA	False	ATTAAA	-18	NA	8472849	8504797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_8473040_8477195_8477268_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
transcript_42714.known	chr5	+	2602	11	FSM	ENSMUSG00000054099.12	ENSMUST00000170496.6	2602	11	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	12.7342059037853	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCATGTTGTTTTACATTAC	NA	False	NA	NA	False	AATAAA	-19	NA	8472898	8504736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_8473040_8477407_8477517_8478628_8478689_8480411_8480519_8490720_8490789_8492446_8492572_8493611_8493786_8497297_8497408_8499612_8499695_8502745_8502827_8503191
transcript_42718.known	chr5	-	3677	10	FSM	ENSMUSG00000040570.15	ENSMUST00000047485.15	3677	10	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	10.9352753469485	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGGTCTTTTTCCTTGA	NA	False	NA	1	True	ATTAAA	-19	NA	8672952	8540333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_8542590_8544783_8544906_8570858_8571017_8578605_8578775_8598235_8598317_8609411_8609502_8619494_8619581_8629024_8629159_8653869_8653986_8672487
transcript_4272.known	chr10	-	3517	18	FSM	ENSMUSG00000020080.9	ENSMUST00000020277.9	3517	18	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_6	3.69231878270005	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGAGGTATTAAGCTTTC	NA	False	NA	NA	False	AATAAA	-22	NA	62258270	62218915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62219702_62221456_62221691_62227089_62227246_62229465_62229650_62230933_62231034_62231176_62231273_62234363_62234484_62234568_62234709_62235970_62236276_62237502_62237737_62239270_62239427_62241203_62241388_62244393_62244494_62245568_62245665_62247285_62247406_62247484_62247634_62253553_62253717_62258076
transcript_42723.nnic	chr5	+	1788	7	NNC	ENSMUSG00000040584.9	novel	494	2	NA	NA	-141	-637	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	78.9460082728837	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTCATATTTTTGAGTTA	NA	False	NA	NA	False	TATAAA	-20	NA	8783146	8797933	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_8783506_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
transcript_42724.nnic	chr5	+	2373	7	NNC	ENSMUSG00000040584.9	novel	494	2	NA	NA	-141	-52	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	78.9460082728837	44	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCCATAATTGTAAATAAG	NA	False	NA	NA	False	AATAAA	-21	NA	8783146	8798518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_8783506_8783598_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
transcript_42725.nic	chr5	+	1838	6	ISM	ENSMUSG00000040584.9	ENSMUST00000126846.2	2705	10	13371	637	-98	-637	3prime_fragment	FALSE	canonical	3	112	junction_1	56.9582303095874	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATTCATATTTTTGAGTTA	NA	False	NA	NA	False	TATAAA	-20	NA	8783189	8797933	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
transcript_42726.nic	chr5	+	2525	6	ISM	ENSMUSG00000040584.9	ENSMUST00000126846.2	2705	10	13269	52	-200	-52	3prime_fragment	FALSE	canonical	3	112	junction_1	56.9582303095874	52	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCCATAATTGTAAATAAG	NA	False	NA	NA	False	AATAAA	-21	NA	8783087	8798518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_8783740_8787614_8787772_8788694_8788893_8790408_8790616_8796508_8796656_8797354
transcript_42727.known	chr5	+	4306	28	FSM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_6	57.377196351684	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	NA	False	NA	10	True	ATTAAA	-17	NA	8848185	8916315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8860557_8860616_8862654_8862847_8863573_8863746_8864722_8864848_8871271_8871444_8873931_8874046_8874186_8874298_8874472_8874599_8874688_8874893_8875112_8875284_8875550_8875713_8877325_8877500_8877702_8877850_8878822_8878931_8882193_8882272_8885027_8885112_8887590_8887795_8895747_8895849_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
transcript_42728.nnic	chr5	+	1468	7	NNC	ENSMUSG00000028970.10	novel	613	4	NA	NA	-344	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	92.0627805117549	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	5040	False	NA	10	True	ATTAAA	-17	NA	8898988	8916315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_8899041_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
transcript_42729.nnic	chr5	+	1685	7	NNC	ENSMUSG00000028970.10	novel	613	4	NA	NA	-183	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	90.3119593409422	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	5201	False	NA	10	True	ATTAAA	-17	NA	8899149	8916315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_8899419_8899511_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
transcript_42730.nic	chr5	+	1370	6	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	-39	52775	0	-111	5prime_fragment	FALSE	canonical	3	110	junction_4	19.0850727009357	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTATTTGTAACACAATTT	NA	False	NA	3	True	AATAAA	-21	NA	8848146	8863540	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8860557_8860616_8862654
transcript_42731.nic	chr5	+	1822	6	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	50821	99	-326	-99	3prime_fragment	FALSE	canonical	3	175	junction_1	34.1912269449343	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTTAATTTCTACCCTAC	5058	False	NA	15	True	AATAAA	-19	NA	8899006	8916216	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
transcript_42732.nic	chr5	+	1921	6	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	50821	0	-326	0	3prime_fragment	FALSE	canonical	3	175	junction_1	34.1912269449343	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	5058	False	NA	10	True	ATTAAA	-17	NA	8899006	8916315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_8899653_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
transcript_42734.nnic	chr5	+	1497	6	NNC	ENSMUSG00000028970.10	novel	613	4	NA	NA	-338	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	91.0173609812985	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCTGTTATGTATATGA	7100	False	NA	10	True	ATTAAA	-17	NA	8901048	8916315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_8901271_8901456_8901614_8903428_8903627_8911423_8911631_8914114_8914262_8915749
transcript_42735.nic	chr5	+	828	5	ISM	ENSMUSG00000028970.10	ENSMUST00000009058.10	4306	28	-120	55437	-81	-2773	5prime_fragment	FALSE	canonical	3	110	junction_4	17.1955662890176	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGGTTACCTTGGGGAA	NA	False	NA	NA	False	AATAAA	-18	NA	8848065	8860878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007_8856171_8860557
transcript_42738.nic	chr5	+	505	4	ISM	ENSMUSG00000028970.10	ENSMUST00000196580.5	690	6	-6	7402	0	-7402	5prime_fragment	FALSE	canonical	3	144	junction_1	3.74165738677394	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAATGTGCAGTGTTGTGT	NA	False	NA	NA	False	AATGAA	-19	NA	8848146	8856249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007
transcript_42739.nic	chr5	+	1516	4	ISM	ENSMUSG00000028970.10	ENSMUST00000196580.5	690	6	-87	6472	-81	-6472	5prime_fragment	FALSE	canonical	3	144	junction_1	3.74165738677394	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCCTGTGCTAAAAGTTAT	NA	False	NA	NA	False	AATAAA	-17	NA	8848065	8857179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_8848290_8848735_8848807_8855432_8855482_8856007
transcript_42741.known	chr5	-	2996	18	FSM	ENSMUSG00000003623.5	ENSMUST00000003720.5	2996	18	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_6	20.8630399507397	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGTTGAAAACAATGATTGT	NA	False	NA	-11	True	AATAAA	-30	NA	9047324	9016032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_9016973_9018646_9018767_9018869_9018964_9019047_9019127_9019915_9020040_9023585_9023717_9023944_9024053_9024132_9024217_9026007_9026110_9027454_9027581_9028197_9028292_9033688_9033798_9037767_9037893_9038103_9038286_9039605_9039731_9043505_9043642_9046451_9046548_9047103
transcript_42748.known	chr5	-	3806	18	FSM	ENSMUSG00000042508.17	ENSMUST00000071921.13	3806	18	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_6	37.7529760049699	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGAGAATTCCTTGCT	NA	False	NA	66	True	NA	NA	NA	9211776	9168800	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9176539_9176750_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
transcript_42752.known	chr5	-	3498	17	FSM	ENSMUSG00000042508.17	ENSMUST00000095017.11	3498	17	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_5	37.579706957346	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAAGATTTTGAGCCATGCA	NA	False	NA	-5	True	AATAAA	-20	NA	9211749	9168871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_9170139_9170349_9170495_9171084_9171463_9171781_9171938_9174441_9174528_9177956_9178109_9179147_9179377_9180367_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
transcript_42756.nic	chr5	-	1127	10	ISM	ENSMUSG00000042508.17	ENSMUST00000184903.8	1950	14	-47	8309	-14	921	5prime_fragment	FALSE	canonical	3	216	junction_1	19.2700112437262	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTGAGTGCTGCTGGGC	NA	False	NA	NA	False	NA	NA	NA	9211790	9180366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_9180478_9181275_9181309_9182455_9182614_9186065_9186143_9187125_9187241_9190385_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
transcript_42757.known	chr5	-	1145	5	FSM	ENSMUSG00000042508.17	ENSMUST00000183792.8	1145	5	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_4	21.1231508066387	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGCACCAGAAGAGGGCG	NA	False	NA	NA	False	NA	NA	NA	9211734	9189817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_9190481_9198899_9199023_9200375_9200493_9201797_9201919_9211613
transcript_42758.known	chr5	+	1040	5	FSM	ENSMUSG00000079659.6	ENSMUST00000115365.3	1040	5	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	62.4019230472908	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTTTTTTTCCTCCTTT	NA	False	NA	10	True	AATAAA	-21	NA	9150746	9169045	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_9150860_9151216_9151396_9166479_9166531_9167458_9167564_9168453
transcript_42759.known	chr5	-	904	2	FSM	ENSMUSG00000104941.2	ENSMUST00000198497.2	904	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAAAAAAGAAA	NA	False	NA	NA	False	AATAAA	-15	NA	12405754	12404663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_12405372_12405558
transcript_4276.known	chr10	-	2604	15	FSM	ENSMUSG00000020079.16	ENSMUST00000020273.16	2604	15	0	0	0	0	multi-exon	FALSE	canonical	2	205	junction_12	41.8359283147773	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTTTTGTAATTGCCTT	NA	False	NA	95	True	AATAGA	-18	NA	62285517	62264987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62265614_62266249_62266399_62268067_62268245_62268830_62268912_62270173_62270394_62271237_62271332_62271424_62271606_62273212_62273305_62274752_62274831_62276913_62277026_62279173_62279343_62280817_62280933_62282802_62282911_62283474_62283553_62285193
transcript_42760.known	chr5	-	3135	8	FSM	ENSMUSG00000057614.7	ENSMUST00000074694.7	3135	8	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_3	12.7711409363583	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCTATTGACTGAATTT	NA	False	NA	-7	True	AATAAA	-21	NA	18565353	18470132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_18472208_18476823_18476978_18478443_18478574_18494521_18494651_18496460_18496619_18513550_18513693_18513780_18513824_18565049
transcript_42761.nic	chr5	-	4643	18	NIC	ENSMUSG00000039987.16	novel	4840	18	NA	NA	0	-106	combination_of_known_junctions	FALSE	canonical	3	53	junction_9	51.0853143531539	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGTGTTTTTTTAAG	NA	False	NA	-8	True	AATAAA	-16	NA	21087075	20963766	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_20966074_20966661_20966788_20969211_20969308_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987446_20994626_20994783_20999292_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
transcript_42762.known	chr5	-	4840	18	FSM	ENSMUSG00000039987.16	ENSMUST00000118174.8	4840	18	0	0	0	0	multi-exon	TRUE	canonical	3	159	junction_9	38.2607155309617	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAGCACTTCATAGTTTG	NA	False	NA	-4	True	AATAAA	-13	NA	21087122	20963660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_20966074_20966661_20966788_20969211_20969308_20970755_20970912_20977172_20977260_20978682_20978815_20979000_20979274_20980876_20981006_20987270_20987490_20994626_20994783_20999292_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
transcript_42765.known	chr5	-	2000	8	FSM	ENSMUSG00000039987.16	ENSMUST00000140147.2	2000	8	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_2	38.2152870362805	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGAAAAAGAAATTAGAATAT	NA	False	NA	NA	False	NA	NA	NA	21087076	20998299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_20999480_21006899_21007065_21008182_21008349_21010652_21010812_21012401_21012472_21018237_21018295_21060119_21060200_21086953
transcript_42766.known	chr5	+	1147	2	FSM	ENSMUSG00000045435.10	ENSMUST00000115259.3	1147	2	0	0	0	0	multi-exon	FALSE	canonical	3	465	junction_1	0	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCCACATGCCTCTTAC	NA	False	NA	8	True	AATAAA	-18	NA	21087188	21091868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_21087654_21091186
transcript_42767.known	chr5	-	7651	7	FSM	ENSMUSG00000039968.10	ENSMUST00000196780.5	7651	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_5	8.0363756341608	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGACAATTCAGTTTGTT	NA	False	NA	NA	False	AATAAA	-43	NA	21161396	21100588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_21101900_21107285_21107454_21110777_21110921_21113104_21113243_21124522_21125161_21132617_21132729_21156254
transcript_42768.known	chr5	-	5550	8	FSM	ENSMUSG00000039968.10	ENSMUST00000036489.10	5550	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_6	8.29802041797578	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATCTTTTTACCTTTGTT	NA	False	NA	-18	True	AATAAA	-18	NA	21156820	21098025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_21101703_21101790_21101900_21107285_21107454_21110777_21110921_21113104_21113243_21124522_21125161_21132617_21132729_21156254
transcript_42770.known	chr5	+	2221	6	FSM	ENSMUSG00000038525.17	ENSMUST00000072896.13	2221	6	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_5	40.0679422980517	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTTCCAATTTGTTTTAT	NA	False	NA	6	True	AGTAAA	-26	NA	21850876	21867692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
transcript_42774.known	chr5	+	1167	6	FSM	ENSMUSG00000038525.17	ENSMUST00000148873.8	1167	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	154.901775328755	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGGTTGCTCCTATTTTT	NA	False	NA	2	True	AATAAA	-12	NA	21850810	21866614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_21851234_21853659_21853767_21856742_21856878_21858373_21858551_21865550_21865623_21866361
transcript_42777.nnic	chr5	+	1077	5	NNC	ENSMUSG00000038525.17	novel	2700	5	NA	NA	0	-4307	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	180.301656953007	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATTCTCATTGCTATGT	NA	False	NA	NA	False	AATAAA	-15	NA	21851014	21862307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_21851234_21853617_21853767_21856742_21856878_21858373_21858551_21861910
transcript_42780.known	chr5	-	3724	5	FSM	ENSMUSG00000044968.17	ENSMUST00000060899.9	3724	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	45.4883226773641	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TACTTGAAAAGATACCTGAA	NA	False	NA	NA	False	AATAAA	-17	NA	21906394	21867900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_21870361_21875486_21875602_21880452_21881100_21888153_21888464_21906202
transcript_42785.nic	chr5	-	1848	4	ISM	ENSMUSG00000044968.17	ENSMUST00000115217.8	3954	5	17358	2257	17358	-2255	3prime_fragment	FALSE	canonical	3	67	junction_3	28.4292494136272	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTCTGCAAGTGTGTGT	NA	False	NA	NA	False	AAGAAA	-34	NA	21889034	21870155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_21870361_21875486_21875602_21880452_21881100_21888153
transcript_42786.known	chr5	-	3954	5	FSM	ENSMUSG00000044968.17	ENSMUST00000115217.8	3954	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	48.8108594474631	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CTTGAAAAGATACCTGAAAA	NA	False	NA	NA	False	AATAAA	-19	NA	21906392	21867898	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_21870361_21875486_21875602_21880452_21881100_21888153_21888464_21905972
transcript_42789.known	chr5	+	1615	13	FSM	ENSMUSG00000029017.14	ENSMUST00000030882.12	1615	13	0	0	0	0	multi-exon	TRUE	canonical	3	306	junction_5	33.8430815184827	433	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCGTTAGTCTGTTATATGT	NA	False	NA	16	True	AATAAA	-18	NA	21942138	21962150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_21942275_21943866_21944008_21945037_21945125_21945482_21945613_21947755_21947955_21948376_21948457_21950975_21951089_21951975_21952120_21953746_21953908_21961399_21961486_21961584_21961674_21961812_21961889_21961977
transcript_4279.known	chr10	-	2597	9	FSM	ENSMUSG00000020078.17	ENSMUST00000105447.11	2597	9	0	0	0	0	multi-exon	FALSE	canonical	3	953	junction_7	50.5010829091813	310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTTAAGTTTGTAGTT	5198	False	NA	-11	True	AATAAA	-12	NA	62322584	62291055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62306838_62306915_62316336_62316487_62322436
transcript_42791.known	chr5	-	1994	17	FSM	ENSMUSG00000029014.15	ENSMUST00000115195.8	1994	17	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_16	257.325297228527	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATTTTCACTTGGAATT	NA	False	NA	-12	True	AATAAA	-15	NA	21990214	21962279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988147_21989986
transcript_42792.known	chr5	-	2133	17	FSM	ENSMUSG00000029014.15	ENSMUST00000030771.12	2133	17	0	0	0	0	multi-exon	FALSE	canonical	3	849	junction_11	91.8299209136107	512	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATTATAGTCATCATTTAA	NA	False	NA	3	True	AATAAA	-30	NA	21990249	21962264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_21962408_21962762_21962918_21965363_21965472_21965623_21965725_21966538_21966724_21968443_21968514_21968738_21968828_21971553_21971704_21973434_21973557_21973643_21973736_21975482_21975549_21978775_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
transcript_42796.known	chr5	-	1011	6	FSM	ENSMUSG00000029014.15	ENSMUST00000147987.2	1011	6	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_1	59.5449410109709	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCATTGAGCCATCTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	21990152	21978519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_21978857_21979931_21980074_21981714_21981814_21986318_21986395_21988044_21988236_21989986
transcript_42797.known	chr5	+	1775	13	FSM	ENSMUSG00000028932.9	ENSMUST00000239497.2	1775	13	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	502.901056095752	3143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACTGTGTCAGTGCTTC	NA	False	NA	11	True	AATAAA	-7	NA	21990280	22008775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_21990516_21991647_21991883_22000105_22000144_22000760_22000843_22001530_22001631_22004420_22004553_22004933_22005007_22005541_22005638_22006205_22006371_22007523_22007612_22008067_22008271_22008363_22008461_22008544
transcript_428.known	chr1	+	632	5	FSM	ENSMUSG00000025779.11	ENSMUST00000026881.11	632	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	0.707106781186548	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTTCTGTTTTTCTTTT	NA	False	NA	NA	False	NA	NA	NA	16758656	16779835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_16758844_16761907_16761998_16771018_16771148_16776396_16776450_16779662
transcript_42804.nic	chr5	-	2026	14	NIC	ENSMUSG00000029012.12	novel	2103	14	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_12	150.475380832502	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTAGCTGTGTTCTTTGGT	NA	False	NA	-7	True	AATAAA	-14	NA	22755390	22691486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751503_22752921_22753015_22755189
transcript_42805.known	chr5	-	2103	14	FSM	ENSMUSG00000029012.12	ENSMUST00000030872.12	2103	14	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_10	41.6678895284064	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTAGCTGTGTTCTTTGGT	NA	False	NA	-7	True	AATAAA	-14	NA	22755373	22691486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731452_22731532_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
transcript_42808.known	chr5	-	2117	13	FSM	ENSMUSG00000029012.12	ENSMUST00000135906.8	2117	13	0	0	0	0	multi-exon	TRUE	canonical	3	527	junction_9	41.555434863164	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGTTCTTTGGTTCTG	NA	False	NA	-3	True	AATAAA	-18	NA	22755302	22691482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_22692216_22704973_22705087_22721701_22721813_22727388_22727437_22728513_22728627_22729813_22729867_22731360_22731582_22734152_22734284_22738760_22738873_22742519_22742595_22751395_22751597_22752921_22753015_22755189
transcript_42814.known	chr5	-	555	1	FSM	ENSMUSG00000081855.5	ENSMUST00000121001.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1407	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAAGGC	NA	False	NA	NA	False	AAGAAA	-34	NA	22818180	22817625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_22817600_22818200
transcript_42815.known	chr5	-	1983	1	FSM	ENSMUSG00000073147.4	ENSMUST00000189045.2	1983	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGGTAAATATTCGTTAA	NA	False	NA	NA	False	AATAAA	-19	NA	23639267	23637284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_23637300_23639300
transcript_42824.nic	chr5	-	921	9	NIC	ENSMUSG00000062604.12	novel	946	9	NA	NA	-20	-1059	combination_of_known_junctions	FALSE	canonical	3	183	junction_1	32.7945784391262	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAGTATTCACATGTCTAT	NA	False	NA	NA	False	NA	NA	NA	23880985	23731787	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_23731814_23732894_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
transcript_42826.nic	chr5	-	1176	8	NIC	ENSMUSG00000062604.12	novel	946	9	NA	NA	-20	331	combination_of_known_junctions	FALSE	canonical	3	228	junction_6	19.3369689286335	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCAGTCTTCTGATTTTG	NA	False	NA	NA	False	AATATA	-22	NA	23880985	23732613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_23733061_23745372_23745480_23750520_23750609_23751977_23752066_23753452_23753562_23770111_23770264_23880717_23880773_23880855
transcript_42827.known	chr5	+	7317	27	FSM	ENSMUSG00000029004.16	ENSMUST00000115128.8	7317	27	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	9.24166024173517	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGATATGAAAATATGTTTA	NA	False	NA	NA	False	TATAAA	-31	NA	23639446	23709233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_23639782_23651523_23651597_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23681483_23681523_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344_23690610_23691299_23691399_23697265_23697431_23698196_23698506_23700983_23701239_23701401_23701547_23701969_23702221_23702536_23702594_23702725_23703293_23704279_23704591_23705253_23705343_23705448_23705575_23705724_23705811_23706521
transcript_42828.nic	chr5	+	1941	13	ISM	ENSMUSG00000029004.16	ENSMUST00000094962.9	7252	26	-21	18784	-21	0	5prime_fragment	FALSE	canonical	3	18	junction_10	3.30298686376774	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGGAAAAAAGGAAAAAAAG	NA	False	NA	NA	False	AAAACA	-23	NA	23639417	23690449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_23639782_23655149_23655335_23668013_23668129_23669700_23669931_23672105_23672187_23676745_23676805_23678478_23678652_23681483_23681523_23683511_23683743_23683850_23683982_23686206_23686325_23687399_23687510_23690344
transcript_42833.nnic	chr5	-	1684	5	NNC	ENSMUSG00000105987.5	novel	345	4	NA	NA	-15	-4	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	6.74536878161602	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATACTATTCTAGTCTGAG	5241	False	NA	NA	False	NA	NA	NA	23917680	23903297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_23904335_23904943_23905472_23915363_23915407_23916113_23916149_23917639
transcript_42835.known	chr5	-	345	4	FSM	ENSMUSG00000105987.5	ENSMUST00000198984.5	345	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	6.68331255192114	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTAGGAGTCTTGTGAT	5261	False	NA	NA	False	NA	NA	NA	23917660	23905225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_23905472_23915363_23915407_23916113_23916149_23917639
transcript_42839.known	chr5	-	3407	16	FSM	ENSMUSG00000057541.15	ENSMUST00000119946.8	3407	16	0	0	0	0	multi-exon	TRUE	canonical	3	301	junction_13	29.1369181623589	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCATGTAAAAATCTTGTC	NA	False	NA	-8	True	AATAAA	-24	NA	23988709	23945645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_23946975_23947341_23947434_23948414_23948545_23951423_23951526_23952791_23952919_23953680_23953842_23954802_23954865_23957259_23957386_23959455_23959585_23965219_23965298_23967360_23967473_23973765_23973911_23980666_23980769_23980881_23980967_23983070_23983498_23988509
transcript_42841.known	chr5	+	3298	15	FSM	ENSMUSG00000028999.16	ENSMUST00000030852.13	3298	15	0	0	0	0	multi-exon	TRUE	canonical	2	56	junction_5	10.4591040315534	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAAGTATTTCTTTGTGTG	NA	False	NA	4	True	NA	NA	NA	23992708	24025367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_23992881_23993287_23993334_23999300_23999486_24005592_24005835_24010307_24010482_24010568_24010719_24012036_24012194_24014781_24014893_24014966_24015193_24015894_24016033_24016707_24016908_24020649_24020865_24021736_24021918_24022032_24022152_24024385
transcript_42844.known	chr5	-	1125	3	FSM	ENSMUSG00000028998.7	ENSMUST00000030851.7	1125	3	0	0	0	0	multi-exon	FALSE	canonical	3	3790	junction_2	61.5	2848	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTATTAGTGTAGTCCTAG	NA	False	NA	NA	False	AATAAA	-15	NA	24049159	24043941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_24044827_24046707_24046757_24048968
transcript_42845.known	chr5	+	1375	4	FSM	ENSMUSG00000097180.6	ENSMUST00000181574.6	1375	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	11.0453610171873	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCGTCAGGTTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	24055594	24060036	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_24055620_24057118_24057154_24057715_24057759_24058764
transcript_42847.known	chr5	+	318	3	FSM	ENSMUSG00000097180.6	ENSMUST00000197551.2	318	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	6	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTTACTTTTATGTT	NA	False	NA	NA	False	CATAAA	-31	NA	24055598	24057977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_24055620_24057118_24057154_24057715
transcript_42849.known	chr5	+	2966	11	FSM	ENSMUSG00000028986.13	ENSMUST00000030841.10	2966	11	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	4.51220566907139	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGATTTGCTTTGTTTA	NA	False	NA	6	True	ATTAAA	-13	NA	24305602	24365783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_24305873_24331819_24331923_24332666_24332761_24332977_24333103_24339961_24340138_24343303_24343479_24346148_24346292_24354122_24354364_24361887_24362090_24363536_24363635_24364444
transcript_42852.known	chr5	+	2914	7	FSM	ENSMUSG00000048439.16	ENSMUST00000049887.13	2914	7	0	0	0	0	multi-exon	TRUE	canonical	3	52	junction_5	7.43116560320265	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGACTGTCTGTTATCTACC	5146	False	NA	NA	False	NA	NA	NA	24369960	24389011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_24370202_24372340_24372564_24374293_24374389_24380451_24380529_24382997_24383085_24386078_24386164_24386905
transcript_42857.known	chr5	+	1624	6	FSM	ENSMUSG00000048439.16	ENSMUST00000115101.4	1624	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	25.7013618316229	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCAAGGGACTCTTTTGT	5183	False	NA	NA	False	AATAAA	-20	NA	24369997	24387835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_24370202_24372340_24372564_24374293_24374389_24382997_24383085_24386078_24386164_24386905
transcript_4286.nic	chr10	-	2521	8	NIC	ENSMUSG00000020078.17	novel	2597	9	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	111	junction_6	333.910900983958	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAAGTTTGTAGTTTAAAT	5203	False	NA	-6	True	AATAAA	-17	NA	62322579	62291050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_62292638_62294702_62294846_62299469_62299539_62300410_62300518_62304068_62304234_62305679_62305837_62316336_62316487_62322436
transcript_42865.known	chr5	-	741	4	FSM	ENSMUSG00000038319.15	ENSMUST00000129246.2	741	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	4.64279609239471	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGACGCCTCTCCCTGCCC	NA	False	NA	NA	False	NA	NA	NA	24527252	24525080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_24525148_24526242_24526421_24526633_24526821_24526943
transcript_42866.nnic	chr5	-	1082	3	NIC	ENSMUSG00000038319.15	novel	741	4	NA	NA	-50	-25	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	11.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCCAGGGTGCTGGTTAG	NA	False	NA	-31	True	NA	NA	NA	24527302	24524611	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_24525148_24526633_24526821_24526943
transcript_42867.known	chr5	-	3902	14	FSM	ENSMUSG00000038295.15	ENSMUST00000059401.7	3902	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	10.361512763374	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTACCACAGCCGGAGGAAC	9218	False	NA	NA	False	NA	NA	NA	24597141	24589178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_24590070_24590221_24590362_24590443_24590568_24590750_24590848_24591005_24591140_24591307_24591545_24591945_24592126_24592384_24592542_24592686_24593442_24594778_24594921_24595459_24595622_24596014_24596080_24596201_24596246_24596367
transcript_42869.known	chr5	+	2939	16	FSM	ENSMUSG00000028973.19	ENSMUST00000073076.12	2939	16	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	17.0567679626984	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCGAGGCTGTAGCTTAG	NA	False	NA	29	True	AATAAA	-19	NA	24599152	24614943	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_24599582_24604910_24605221_24605522_24605679_24605754_24605850_24605972_24606079_24606760_24606923_24607042_24607129_24607239_24607338_24608070_24608177_24610812_24610847_24611115_24611253_24611397_24611493_24611665_24611800_24612305_24612454_24613565_24613817_24614351
transcript_42870.known	chr5	+	1657	10	FSM	ENSMUSG00000028973.19	ENSMUST00000115074.6	1657	10	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_9	57.8772647745017	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCAACCACGTCAGGAGTG	NA	False	NA	NA	False	NA	NA	NA	24599393	24608975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_24599582_24604910_24605221_24605522_24605679_24605754_24605850_24605972_24606079_24606760_24606923_24607042_24607129_24607239_24607338_24608070_24608177_24608625
transcript_42875.known	chr5	-	2059	12	FSM	ENSMUSG00000028969.11	ENSMUST00000030814.11	2059	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	52.4982486917657	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGGAAGCCAACCATGCC	NA	False	NA	-11	True	TATAAA	-5	NA	24628528	24623238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_24624461_24624597_24624679_24624780_24624842_24625256_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627387_24627495_24627557_24627645_24627714_24627795_24627885_24628446
transcript_42880.nic	chr5	-	1256	11	NIC	ENSMUSG00000028969.11	novel	2059	12	NA	NA	-32	191	intron_retention	FALSE	canonical	0	0	junction_3	55.0178152965019	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGATGATATGGTGGTGG	NA	False	NA	-9	True	CATAAA	-18	NA	24628560	24624182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_24624461_24624597_24624679_24624780_24624842_24625256_24625327_24625490_24625588_24625728_24625804_24625952_24626049_24627329_24627557_24627645_24627714_24627795_24627885_24628446
transcript_42889.known	chr5	-	1893	10	FSM	ENSMUSG00000028959.15	ENSMUST00000030800.13	1893	10	0	0	0	0	multi-exon	FALSE	canonical	3	1073	junction_9	118.54686003725	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTAAGTCTTGTTTCTGGG	NA	False	NA	-4	True	NA	NA	NA	24650285	24646036	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892_24649304_24650063
transcript_429.known	chr1	-	3031	17	FSM	ENSMUSG00000041859.11	ENSMUST00000053266.11	3031	17	0	0	0	0	multi-exon	FALSE	canonical	3	2257	junction_11	181.480370839383	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGTGTATGTGTG	NA	False	NA	-12	True	AATACA	-9	NA	20890536	20873191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_20873879_20875040_20875132_20875486_20875564_20876020_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
transcript_42904.known	chr5	-	2552	9	FSM	ENSMUSG00000028959.15	ENSMUST00000149085.8	2552	9	0	0	0	0	multi-exon	FALSE	canonical	3	1095	junction_1	118.721049102508	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTAAGTCTTGTTTCTGG	NA	False	NA	-5	True	NA	NA	NA	24650185	24646037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_24646260_24646333_24646449_24646525_24646662_24646729_24646822_24646921_24647082_24647179_24647394_24648001_24648142_24648274_24648455_24648892
transcript_42905.known	chr5	-	1333	3	FSM	ENSMUSG00000028958.16	ENSMUST00000030799.15	1333	3	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	11	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTGTGTGTTGCTTGA	NA	False	NA	4	True	ATTAAA	-26	NA	24652852	24650455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_24651272_24651531_24651951_24652754
transcript_42906.known	chr5	-	1598	3	FSM	ENSMUSG00000028958.16	ENSMUST00000115033.8	1598	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	44.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCCAGTGTGTCTGTGTG	NA	False	NA	-4	True	ATTAAA	-18	NA	24652623	24650463	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_24651272_24651531_24651951_24652252
transcript_42908.known	chr5	-	2327	6	FSM	ENSMUSG00000038204.14	ENSMUST00000048302.13	2327	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTACCTGAATAGATGTG	6710	False	NA	NA	False	NA	NA	NA	24745455	24737694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_24738510_24738651_24738838_24739104_24739219_24742627_24743148_24744608_24744877_24745031
transcript_42910.known	chr5	-	2569	14	FSM	ENSMUSG00000028953.11	ENSMUST00000030795.10	2569	14	0	0	0	0	multi-exon	FALSE	canonical	3	1197	junction_13	122.348082348837	340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCCTGGGTCTCTGAGC	NA	False	NA	-29	True	AATAAA	-21	NA	24782465	24770342	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_24771002_24771476_24771681_24772181_24772311_24772498_24772562_24773202_24773314_24773564_24773655_24773735_24773856_24774068_24774165_24776141_24776245_24777000_24777097_24778419_24778775_24779164_24779378_24781516_24781726_24782344
transcript_42915.nic	chr5	-	1349	12	ISM	ENSMUSG00000028949.14	ENSMUST00000030791.12	1735	13	3363	0	289	0	3prime_fragment	FALSE	canonical	3	153	junction_8	20.0610638050861	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGCCTTGTGGTCATTGTG	NA	False	NA	0	True	ATTAAA	-17	NA	24803647	24797619	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_24797803_24798014_24798117_24798222_24798346_24798634_24798771_24798919_24799018_24799829_24799992_24800140_24800243_24800387_24800484_24800720_24800844_24800949_24801073_24801804_24801848_24803589
transcript_42916.known	chr5	+	3546	15	FSM	ENSMUSG00000028954.12	ENSMUST00000197407.5	3546	15	0	0	0	0	multi-exon	TRUE	canonical	3	299	junction_1	111.175284472544	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTCTGGTCTGACGCAGT	NA	False	NA	9	True	AATAAA	-18	NA	24890529	24915374	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_24891021_24894390_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347_24906532_24907374_24907483_24908416_24908570_24911435_24911583_24912765_24912862_24913680_24913859_24913986
transcript_42919.nic	chr5	+	1299	9	ISM	ENSMUSG00000028954.12	ENSMUST00000197407.5	3546	15	390	8630	-65	-8630	5prime_fragment	FALSE	canonical	3	299	junction_1	134.62116986195	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCTGTTTTGTTGTTGTG	NA	False	NA	NA	False	AATGAA	-20	NA	24890919	24906744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_24891021_24894390_24894509_24897804_24897973_24899697_24899760_24900517_24900589_24902002_24902186_24902329_24902422_24903662_24903770_24906347
transcript_42920.known	chr5	-	2364	6	FSM	ENSMUSG00000055235.12	ENSMUST00000068693.12	2364	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	2.85657137141714	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCAGGATTTCTCTGTG	NA	False	NA	NA	False	NA	NA	NA	24935725	24916735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_24917750_24917847_24917952_24920523_24920660_24922964_24923386_24927632_24927775_24935178
transcript_42923.known	chr5	-	1784	8	FSM	ENSMUSG00000028945.10	ENSMUST00000030787.9	1784	8	0	0	0	0	multi-exon	FALSE	canonical	3	1533	junction_1	69.8271919433531	289	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCATCCTCCATCTCCTT	NA	False	NA	NA	False	NA	NA	NA	25047622	25007820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_25008755_25011996_25012079_25012602_25012651_25012745_25012803_25013350_25013434_25018795_25018864_25022757_25022830_25047182
transcript_42929.known	chr5	-	3331	16	FSM	ENSMUSG00000028944.15	ENSMUST00000030784.14	3331	16	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_12	63.6806616381038	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTTTATGTATATGAGTAC	NA	False	NA	-5	True	AATAAA	-23	NA	25305640	25067741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320_25113391_25152421_25152637_25226789_25227070_25233462_25233535_25305008
transcript_4293.nnic	chr10	-	1378	4	NNC	ENSMUSG00000020077.15	novel	1727	4	NA	NA	-6299	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	4.10960933531265	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTGGCTATGTGACATGG	NA	False	NA	-2	True	AATAAA	-21	NA	62350175	62330206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_62330886_62333557_62333703_62343420_62343616_62349816
transcript_42932.known	chr5	-	2205	12	FSM	ENSMUSG00000028944.15	ENSMUST00000114975.8	2205	12	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	21.3386701313649	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTTTTTATGTATATGA	NA	False	NA	-9	True	AATAAA	-19	NA	25113467	25067745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_25068886_25071076_25071171_25074128_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094184_25113320
transcript_42935.known	chr5	-	890	10	FSM	ENSMUSG00000028944.15	ENSMUST00000150135.8	890	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_9	41.6092938336297	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATAACTTGGACATCACAG	NA	False	NA	NA	False	NA	NA	NA	25113507	25074252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_25074276_25076052_25076091_25076491_25076658_25078881_25079009_25080158_25080214_25081986_25082033_25083702_25083762_25085681_25085764_25094079_25094187_25113320
transcript_42940.known	chr5	+	2025	1	FSM	ENSMUSG00000043833.7	ENSMUST00000171190.2	2025	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTATCTTTTGGAGTAC	NA	False	NA	NA	False	TTTAAA	-7	NA	25305980	25308005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_25306000_25308000
transcript_42941.known	chr5	-	3247	3	FSM	ENSMUSG00000028933.12	ENSMUST00000030773.12	3247	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	2.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTATATTTCATATTTTC	NA	False	NA	-12	True	AATACA	-11	NA	25910823	25894809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_25897827_25903248_25903331_25910675
transcript_42946.known	chr5	+	1712	12	FSM	ENSMUSG00000056367.15	ENSMUST00000088244.6	1712	12	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_4	20.0016528242663	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGTTTATATTTCCTAT	NA	False	NA	NA	False	AATAAA	-24	NA	25965023	26055340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_25965127_26003443_26003500_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26034523_26034668_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
transcript_42948.nnic	chr5	+	1637	11	NIC	ENSMUSG00000056367.15	novel	1712	12	NA	NA	-40	0	combination_of_known_splicesites	TRUE	canonical	3	16	junction_6	37.7095478625772	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGTTTATATTTCCTAT	NA	False	NA	NA	False	AATAAA	-24	NA	25964954	26055340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_25965127_26003443_26003500_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
transcript_42949.nnic	chr5	+	1983	11	NIC	ENSMUSG00000056367.15	novel	1712	12	NA	NA	-40	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_6	37.7095478625772	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTTCCTTGTGGTCTC	NA	False	NA	10	True	AATAAA	-18	NA	25964954	26055686	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_25965127_26003443_26003500_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
transcript_4295.known	chr10	-	1727	4	FSM	ENSMUSG00000020077.15	ENSMUST00000160987.8	1727	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	6.34209919681348	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TACAATATGATATAAAATGT	NA	False	NA	NA	False	NA	NA	NA	62363230	62329611	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62330886_62333557_62333703_62343420_62343616_62363117
transcript_42950.known	chr5	+	2031	11	FSM	ENSMUSG00000056367.15	ENSMUST00000128727.8	2031	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	35.2080956599473	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTTCCTTGTGGTCTC	NA	False	NA	10	True	AATAAA	-18	NA	25964994	26055686	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_25965127_26014782_26014908_26016914_26017026_26027402_26027499_26030105_26030214_26034523_26034668_26036608_26036783_26037383_26037477_26053359_26053486_26054070_26054155_26054848
transcript_42952.known	chr5	+	428	2	FSM	ENSMUSG00000056367.15	ENSMUST00000198693.2	428	2	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCCTTGTTATCCCCCTGG	NA	False	NA	NA	False	NA	NA	NA	25965036	25982338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_25965127_25982000
transcript_42954.known	chr5	+	2697	5	FSM	ENSMUSG00000045294.12	ENSMUST00000059155.11	2697	5	0	0	0	0	multi-exon	FALSE	canonical	3	1125	junction_2	41.7215471908701	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGTATTCCTGAGGTT	NA	False	NA	14	True	ATTAAA	-13	NA	28276360	28283660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_28276794_28278544_28278670_28279479_28279647_28280059_28280160_28281788
transcript_42959.known	chr5	-	1984	3	FSM	ENSMUSG00000044681.20	ENSMUST00000118882.2	1984	3	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	2	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTGAAACTTGCATGAAT	NA	False	NA	-6	True	ATTAAA	-17	NA	28415020	28407446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_28408435_28412284_28412382_28414121
transcript_42962.known	chr5	+	1600	10	FSM	ENSMUSG00000029130.13	ENSMUST00000001247.12	1600	10	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	13.0421917418852	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATGTAGCTAGTGTCTGA	NA	False	NA	89	True	AATAAA	-19	NA	29400994	29430520	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_29401111_29401577_29401644_29402923_29403019_29403571_29403837_29408052_29408196_29410666_29410700_29411171_29411297_29411693_29411803_29429114_29429283_29430040
transcript_42966.nnic	chr5	+	1467	9	NIC	ENSMUSG00000029130.13	novel	1565	10	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	11.1242977306435	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATTTAGTTACTTAAAAT	NA	False	NA	48	True	ATTAAA	-19	NA	29400992	29430479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_29401083_29402923_29403019_29403571_29403837_29408052_29408196_29410666_29410700_29411171_29411297_29411693_29411803_29429114_29429283_29430040
transcript_42976.known	chr5	-	4836	17	FSM	ENSMUSG00000010721.16	ENSMUST00000179191.6	4836	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	16.8800918243948	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAACCTTATACTTGTT	NA	False	NA	NA	False	ATTAAA	-7	NA	29583388	29434811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_29438147_29439975_29440138_29457740_29457808_29459239_29459331_29459543_29459618_29463055_29463134_29463676_29463754_29468392_29468474_29492388_29492462_29496270_29496336_29497149_29497219_29497820_29497948_29498810_29498827_29551760_29551905_29566045_29566086_29568880_29568954_29583124
transcript_42977.known	chr5	-	4926	17	FSM	ENSMUSG00000010721.16	ENSMUST00000055195.11	4926	17	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	11.2080816266656	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGTTTTATAAGTCCCT	NA	False	NA	NA	False	ATTAAA	-19	NA	29583382	29434799	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_29438147_29439975_29440138_29457740_29457808_29459239_29459331_29459543_29459618_29463055_29463134_29463676_29463754_29468392_29468474_29492388_29492462_29496270_29496336_29497149_29497219_29497820_29497948_29528799_29528904_29551764_29551905_29566045_29566086_29568880_29568954_29583124
transcript_42982.known	chr5	+	9219	11	FSM	ENSMUSG00000001569.11	ENSMUST00000001611.11	9219	11	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	15.8962259671911	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATAGAAAAGACTGC	2959	False	NA	NA	False	NA	NA	NA	29639661	29662841	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_29640642_29640927_29641056_29642594_29642791_29644823_29645148_29646328_29646440_29647491_29647660_29648347_29648470_29651236_29651370_29651811_29651944_29654579_29654690_29656026
transcript_42985.known	chr5	+	2918	10	FSM	ENSMUSG00000029131.15	ENSMUST00000008733.15	2918	10	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_9	548.115559591832	203	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTGTGTGTATGTGC	4294	False	NA	33	True	AATAAA	-44	NA	29940685	29991476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322_29971394_29986127_29986449_29990028
transcript_4299.known	chr10	-	938	3	FSM	ENSMUSG00000020077.15	ENSMUST00000020271.13	938	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTGGCTATGTGACATGG	NA	False	NA	-2	True	AATAAA	-21	NA	62343534	62330206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62330886_62333557_62333703_62343420
transcript_42993.known	chr5	+	1605	8	FSM	ENSMUSG00000029131.15	ENSMUST00000114839.8	1605	8	0	0	0	0	multi-exon	FALSE	canonical	3	1788	junction_5	99.4337026590572	897	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTCTTGTGTCTGTGTG	4546	False	NA	42	True	AATAAA	-42	NA	29940937	29972101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29969396_29969529_29970503_29970646_29971322
transcript_42996.known	chr5	+	1024	7	FSM	ENSMUSG00000029131.15	ENSMUST00000012734.10	1024	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	922.805580222015	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATGTTGTATTTGGTCAGA	4601	False	NA	13	True	AATAAA	-21	NA	29940992	29962967	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_29941115_29953342_29953434_29955935_29956046_29957394_29957458_29958539_29958651_29961231_29961337_29962545
transcript_43.known	ERCC-00126	+	1111	1	FSM	ERCC-00126A	DQ459427	1111	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00126_+_0_1100
transcript_4300.known	chr10	-	4722	15	FSM	ENSMUSG00000020075.9	ENSMUST00000045866.9	4722	15	0	0	0	0	multi-exon	FALSE	canonical	3	474	junction_14	69.0087246776279	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTTCTTGGTGGCTTTT	NA	False	NA	-5	True	AATAAA	-18	NA	62438060	62416029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62418387_62418832_62418878_62420409_62420545_62421303_62421464_62423242_62423317_62423782_62423903_62424435_62424598_62425556_62425707_62426399_62426546_62427595_62427782_62428788_62428907_62429740_62429920_62430814_62430891_62434010_62434671_62437906
transcript_43011.known	chr5	-	3163	7	FSM	ENSMUSG00000025747.13	ENSMUST00000026846.11	3163	7	0	0	0	0	multi-exon	FALSE	canonical	3	1628	junction_1	98.4757443344412	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGTTGTTAAGACTGCTA	NA	False	NA	NA	False	NA	NA	NA	30278615	30263824	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
transcript_43017.known	chr5	-	2723	7	FSM	ENSMUSG00000025747.13	ENSMUST00000154751.6	2723	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_5	685.356030752549	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTGAAGACTTTCAGATT	NA	False	NA	-89	True	NA	NA	NA	30278612	30266061	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30273463_30273639_30274831_30276706_30278358
transcript_4302.nic	chr10	-	610	2	ISM	ENSMUSG00000020075.9	ENSMUST00000045866.9	4722	15	-40	18225	-40	-9714	5prime_fragment	FALSE	canonical	3	474	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGGGAAAGAAGCAAACG	NA	False	NA	NA	False	NA	NA	NA	62438100	62434254	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_62434671_62437906
transcript_43021.nic	chr5	-	1049	7	NIC	ENSMUSG00000025747.13	novel	3884	8	NA	NA	-46	67	combination_of_known_junctions	FALSE	canonical	3	80	junction_2	658.000105538661	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCTTTCAGTGATGCTA	NA	False	NA	-22	True	ATTAAA	-18	NA	30278661	30265994	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_30266132_30266965_30267048_30268233_30268410_30269082_30269185_30273463_30273639_30276631_30276706_30278358
transcript_43022.known	chr5	-	636	6	FSM	ENSMUSG00000025747.13	ENSMUST00000196095.5	636	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	735.098251936433	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCGAGAACCAAGACCTTT	NA	False	NA	NA	False	AATGAA	-35	NA	30278567	30266128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_30266132_30266965_30267038_30268233_30268410_30269082_30269185_30276631_30276706_30278358
transcript_43027.known	chr5	+	2249	2	FSM	ENSMUSG00000104667.2	ENSMUST00000197982.2	2249	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGTGCTCTGGAGCACCA	NA	False	NA	NA	False	AATAAA	-14	NA	30297937	30302684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_30298047_30300544
transcript_43028.known	chr5	-	2552	20	FSM	ENSMUSG00000025745.13	ENSMUST00000026843.12	2552	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	102.267992951223	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGGCCTGTTTTCTTCT	NA	False	NA	-3	True	AATAAA	-23	NA	30359974	30324423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_30324959_30325042_30325064_30325717_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
transcript_43030.known	chr5	-	4017	20	FSM	ENSMUSG00000025745.13	ENSMUST00000156859.3	4017	20	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_11	40.0253382350609	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGCACAGCCTAGGTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	30360160	30323301	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_30324959_30325042_30325189_30325685_30325801_30326335_30326532_30327147_30327217_30327618_30327760_30328605_30328693_30331562_30331735_30333797_30333933_30334818_30334929_30337237_30337295_30339055_30339175_30339976_30340100_30345946_30346050_30347716_30347837_30349156_30349296_30350232_30350367_30352343_30352415_30352977_30353020_30359879
transcript_43032.known	chr5	-	1069	1	FSM	ENSMUSG00000025745.13	ENSMUST00000196156.2	1069	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	30359988	30358919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_30358900_30360000
transcript_43034.known	chr5	+	2033	16	FSM	ENSMUSG00000059447.14	ENSMUST00000026841.15	2033	16	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_6	59.1301389591918	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAGTCTCGTTATTAGTGG	NA	False	NA	10	True	AATAAA	-25	NA	30360245	30389591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_30360338_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
transcript_43037.known	chr5	+	2048	16	FSM	ENSMUSG00000059447.14	ENSMUST00000114786.8	2048	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	146.097988426337	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCGTAGTCTCGTTATTA	NA	False	NA	6	True	AATAAA	-21	NA	30360269	30389587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_30360381_30368666_30368742_30369023_30369069_30371662_30371763_30373521_30373567_30374493_30374594_30377623_30377712_30378807_30378996_30379788_30379970_30381885_30382008_30383637_30383718_30383794_30383843_30384549_30384638_30385312_30385388_30385918_30386084_30389050
transcript_43041.known	chr5	+	6803	10	FSM	ENSMUSG00000075703.17	ENSMUST00000145167.9	6803	10	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	10.5725010181025	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAATTGTTTTCAAGTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	30437578	30477425	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_30437814_30452460_30452530_30453409_30453519_30457707_30457783_30461075_30461339_30462709_30462819_30468068_30468118_30469272_30469454_30470335_30470522_30471898
transcript_43044.known	chr5	+	3088	6	FSM	ENSMUSG00000029175.18	ENSMUST00000062962.12	3088	6	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	8.49470423263812	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGACATTTTTTTAAATGAA	6678	False	NA	54	True	AATAAA	-14	NA	30805276	30817073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_30805443_30812091_30812165_30812838_30813011_30813231_30813445_30814090_30814202_30814720
transcript_43049.known	chr5	+	1007	7	FSM	ENSMUSG00000029177.10	ENSMUST00000134846.8	1007	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	786.091474038204	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTTTGCATCTTTTACT	9201	False	NA	11	True	NA	NA	NA	30824255	30831659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_30824458_30826342_30826397_30827035_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
transcript_4305.nic	chr10	-	2686	16	NIC	ENSMUSG00000020076.8	novel	2375	16	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_15	70.2071854505569	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGAGTTTTCT	8065	False	NA	-11	True	ATTAAA	-28	NA	62487038	62451793	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62483312_62483423_62486803
transcript_43052.known	chr5	+	1031	6	FSM	ENSMUSG00000029177.10	ENSMUST00000133316.8	1031	6	0	0	0	0	multi-exon	FALSE	canonical	3	531	junction_2	579.285905231605	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATAAAGCGCTTGAATCT	9186	False	NA	9	True	AATATA	-14	NA	30824240	30831722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_30824458_30827035_30827173_30829807_30829915_30830325_30830404_30830636_30830788_30831381
transcript_43057.known	chr5	+	827	5	FSM	ENSMUSG00000029177.10	ENSMUST00000199617.2	827	5	0	0	0	0	multi-exon	TRUE	canonical	3	33	junction_3	705.72033235553	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCTTGAATCTGTTGTATG	9287	False	NA	17	True	AATAAA	-1	NA	30824341	30831730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_30824458_30829807_30829915_30830325_30830404_30830610_30830788_30831381
transcript_43058.known	chr5	+	1466	5	FSM	ENSMUSG00000029177.10	ENSMUST00000144742.6	1466	5	0	0	0	0	multi-exon	FALSE	canonical	3	1270	junction_1	201.219407612685	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAAGTAAAGTTACTGTAA	9066	False	NA	NA	False	AATGAA	-5	NA	30824120	30832174	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_30824458_30829807_30829915_30830325_30830404_30830636_30830788_30831381
transcript_43059.known	chr5	+	369	4	FSM	ENSMUSG00000029177.10	ENSMUST00000199320.5	369	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	727.263821915175	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGACAGTGGTGTCGGA	9246	False	NA	NA	False	NA	NA	NA	30824300	30831408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_30824458_30829807_30829915_30830325_30830404_30831381
transcript_4306.known	chr10	-	2535	15	FSM	ENSMUSG00000020076.8	ENSMUST00000020270.6	2535	15	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_9	23.4748019486984	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTAAGAGTTTTCT	8106	False	NA	-11	True	ATTAAA	-28	NA	62486997	62451793	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62452296_62455363_62455409_62457167_62457303_62460546_62460707_62460923_62460998_62461941_62462062_62463299_62463462_62469755_62469906_62475639_62475786_62476225_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62486803
transcript_43060.known	chr5	+	1120	4	FSM	ENSMUSG00000029177.10	ENSMUST00000150810.8	1120	4	0	0	0	0	multi-exon	FALSE	canonical	3	1270	junction_1	232.020592955788	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCGTGGCAGTCCCGCCATA	9224	False	NA	40	True	AATAAA	-24	NA	30824278	30831753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_30824458_30829807_30829915_30830325_30830788_30831381
transcript_43062.nic	chr5	+	1415	9	NIC	ENSMUSG00000029168.15	novel	5191	13	NA	NA	-25	98	combination_of_known_junctions	FALSE	canonical	3	11	junction_8	19.6050854372023	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTCCCTTATTTTATA	NA	False	NA	4	True	AATAAA	-13	NA	30869212	30944376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_30869347_30902565_30902831_30934663_30934823_30935318_30935499_30936211_30936281_30938822_30938868_30940538_30940615_30941654_30941812_30944046
transcript_43063.known	chr5	+	488	3	FSM	ENSMUSG00000029166.15	ENSMUST00000202025.2	488	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTATGCCCACCCCACATT	NA	False	NA	NA	False	NA	NA	NA	31021865	31022599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31022073_31022158_31022312_31022471
transcript_43064.known	chr5	+	6110	17	FSM	ENSMUSG00000038828.14	ENSMUST00000201203.4	6110	17	0	0	0	0	multi-exon	TRUE	canonical	3	358	junction_2	22.5422346662881	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGGGCTCATACCTGCA	NA	False	NA	NA	False	GATAAA	-13	NA	31025355	31036524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31027163_31027932_31028133_31028763_31028915_31029064_31029200_31029415_31029499_31029844_31029951_31030030_31030113_31030386_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031880_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706_31033853_31034007
transcript_43065.known	chr5	+	2220	16	FSM	ENSMUSG00000038828.14	ENSMUST00000114716.4	2220	16	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	100.591230013136	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATCATCACTCAAGCAGCC	NA	False	NA	NA	False	NA	NA	NA	31026974	31034388	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31027163_31027932_31028133_31028763_31028915_31029415_31029499_31029844_31029951_31030030_31030113_31030386_31030489_31030838_31030981_31031299_31031392_31031656_31031706_31031880_31031995_31032194_31032313_31033133_31033231_31033390_31033560_31033706_31033853_31034007
transcript_43068.known	chr5	-	1144	3	FSM	ENSMUSG00000038803.8	ENSMUST00000132253.5	1144	3	0	0	0	0	multi-exon	FALSE	canonical	3	823	junction_2	132.5	485	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATGAAAGTGCATTTAGTC	NA	False	NA	NA	False	AATAAA	-19	NA	31065132	31063228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31064111_31064742_31064881_31065008
transcript_43069.known	chr5	-	576	2	FSM	ENSMUSG00000038803.8	ENSMUST00000132034.5	576	2	0	0	0	0	multi-exon	FALSE	canonical	3	1088	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTTTGTGGTCCCAAA	NA	False	NA	-5	True	NA	NA	NA	31065069	31063861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31064111_31064742
transcript_43070.known	chr5	+	3852	8	FSM	ENSMUSG00000029163.10	ENSMUST00000031055.8	3852	8	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_1	4.70345075232981	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTATTCTGCTCTAGTAC	NA	False	NA	22	True	AATAAA	-27	NA	31070745	31078621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31071389_31072325_31072452_31072860_31073082_31074277_31076204_31076599_31076717_31077274_31077293_31077423_31077562_31077958
transcript_43071.nic	chr5	+	1478	8	NIC	ENSMUSG00000029162.16	novel	1257	9	NA	NA	-57	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_2	9.11379309013519	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTGTCTGTCTGTCTGT	1085	False	NA	6	True	AATAAA	-15	NA	31078876	31088589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_31079352_31082082_31082200_31084031_31084167_31085786_31085860_31086864_31087012_31087891_31087981_31088059_31088218_31088305
transcript_43072.known	chr5	+	1087	7	FSM	ENSMUSG00000029162.16	ENSMUST00000201571.4	1087	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	5.24933858267454	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGCAAGCGGCACCAGCT	1142	False	NA	NA	False	NA	NA	NA	31078933	31088390	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31079352_31082082_31082200_31085786_31085860_31086864_31087012_31087891_31087981_31088059_31088218_31088305
transcript_43076.known	chr5	+	1352	9	FSM	ENSMUSG00000006638.16	ENSMUST00000201125.4	1352	9	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	7.48331477354788	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGCTGAGGTTCCCTTTCC	NA	False	NA	19	True	ATTAAA	-21	NA	31107409	31112435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31107593_31110228_31110390_31110686_31110870_31111010_31111057_31111222_31111336_31111434_31111610_31111748_31111798_31111877_31112044_31112159
transcript_43080.known	chr5	-	6300	9	FSM	ENSMUSG00000045302.14	ENSMUST00000074840.12	6300	9	0	0	0	0	multi-exon	TRUE	canonical	3	205	junction_7	28.1735691739616	300	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTAGATTGTGTTATTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	31117705	31108196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31117314
transcript_4309.nic	chr10	-	1241	6	ISM	ENSMUSG00000020076.8	ENSMUST00000020270.6	2535	15	-54	24286	-54	194	5prime_fragment	FALSE	canonical	3	233	junction_5	19.5714077163601	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCAAAGCGTACTCTGAAT	8052	False	NA	NA	False	ATTAAA	-28	NA	62487051	62476079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_62476412_62476523_62476642_62478554_62478734_62479075_62479152_62482692_62482981_62486803
transcript_43090.nic	chr5	-	2368	8	NIC	ENSMUSG00000045302.14	novel	6300	9	NA	NA	29	1	intron_retention	FALSE	canonical	3	234	junction_6	22.518926280272	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGCAGTCCTCTTGTCA	NA	False	NA	-7	True	AATAAA	-22	NA	31117676	31112385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_31113082_31113273_31113434_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116757_31117314
transcript_43092.known	chr5	-	1869	8	FSM	ENSMUSG00000045302.14	ENSMUST00000202567.2	1869	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	89.9026684582742	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCCAGCAGTCCTCTTGTC	NA	False	NA	-8	True	AATAAA	-21	NA	31117624	31112386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31113082_31113605_31113679_31115231_31115406_31115576_31115702_31115814_31115896_31116059_31116281_31116566_31116757_31117314
transcript_43095.nic	chr5	-	3162	18	NIC	ENSMUSG00000006641.13	novel	3436	18	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	63	junction_17	22.1293773649543	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGTGTTCCT	730	False	NA	-1	True	AATAAA	-19	NA	31205426	31193379	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31205309
transcript_43096.nic	chr5	-	2667	18	NIC	ENSMUSG00000006641.13	novel	3078	18	NA	NA	-3	356	combination_of_known_junctions	FALSE	canonical	3	63	junction_17	22.1293773649543	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTGGCATTTGATTAAGTG	730	False	NA	NA	False	AATAAA	-18	NA	31205426	31193874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973_31205144_31205309
transcript_43098.known	chr5	+	840	7	FSM	ENSMUSG00000013622.16	ENSMUST00000200942.2	840	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	101.141402666432	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGAATGCTGCCGTACCTGT	932	False	NA	7	True	AATAAA	-20	NA	31206002	31211962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31206101_31206805_31206828_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
transcript_43099.known	chr5	+	966	7	FSM	ENSMUSG00000013622.16	ENSMUST00000013766.13	966	7	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_6	22.1108319357027	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCGTACCTGTGCGTG	908	False	NA	12	True	AATAAA	-25	NA	31205978	31211967	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31206101_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
transcript_431.known	chr1	-	3431	16	FSM	ENSMUSG00000041859.11	ENSMUST00000185296.2	3431	16	0	0	0	0	multi-exon	FALSE	canonical	3	2257	junction_10	187.277975213318	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTATTTGTCTGTGTGTAT	NA	False	NA	-17	True	AATACA	-4	NA	20890484	20873196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_20873879_20875040_20875132_20875486_20876125_20876965_20877107_20878944_20879096_20879819_20879947_20880281_20880457_20882188_20882398_20882787_20882920_20883184_20883339_20884622_20884732_20884912_20885152_20886872_20887004_20887466_20887676_20888016_20888130_20890354
transcript_43100.known	chr5	+	548	7	FSM	ENSMUSG00000013622.16	ENSMUST00000200748.4	548	7	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_6	104.663614605183	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCGGAAAGCCAAGGCTTCA	995	False	NA	NA	False	NA	NA	NA	31206065	31211688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31206101_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211658
transcript_43102.known	chr5	+	894	7	FSM	ENSMUSG00000013622.16	ENSMUST00000201136.2	894	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	108.191830663051	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGCGCACCCTCATCTATC	1058	False	NA	NA	False	NA	NA	NA	31206128	31211737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31206409_31206805_31206925_31209540_31209613_31209805_31209878_31210106_31210229_31211304_31211403_31211606
transcript_43107.known	chr5	+	1696	5	FSM	ENSMUSG00000013622.16	ENSMUST00000201887.4	1696	5	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	26.2202212042538	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGAATGCTGCCGTACCTG	594	False	NA	6	True	AATAAA	-19	NA	31205664	31211961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31206101_31206805_31206925_31209540_31210229_31211304_31211403_31211606
transcript_43109.known	chr5	-	3078	18	FSM	ENSMUSG00000006641.13	ENSMUST00000202556.4	3078	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_16	33.6216481587904	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTCTGGCCTCTGTGTTCC	803	False	NA	-2	True	AATAAA	-18	NA	31205353	31193380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201926_31204973_31205144_31205309
transcript_4311.known	chr10	-	4352	25	FSM	ENSMUSG00000020074.8	ENSMUST00000020268.7	4352	25	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_11	99.9008883844383	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGTAGTTCCTTCAGAA	NA	False	NA	0	True	ATTAAA	-18	NA	62628010	62579706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627983
transcript_43110.known	chr5	-	3248	17	FSM	ENSMUSG00000006641.13	ENSMUST00000202520.4	3248	17	0	0	0	0	multi-exon	TRUE	canonical	3	71	junction_13	19.5252240704172	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGTGTTCCT	810	False	NA	-1	True	AATAAA	-19	NA	31205346	31193379	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31194298_31194446_31194563_31194752_31194857_31195057_31195237_31195357_31195445_31196285_31196354_31196647_31196761_31197097_31197187_31197705_31197836_31198001_31198143_31198487_31198643_31198887_31198956_31199481_31199534_31199922_31199989_31200293_31200804_31201856_31201936_31204973
transcript_43111.known	chr5	+	7137	44	FSM	ENSMUSG00000013629.17	ENSMUST00000013773.12	7137	44	0	0	0	0	multi-exon	TRUE	canonical	3	481	junction_6	136.90610173497	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGTTCGTCATGAGTACT	7053	False	NA	18	True	AATAAA	-14	NA	31212123	31235823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31212381_31212586_31212727_31215412_31215543_31216020_31216164_31216324_31216467_31216776_31216949_31217122_31217309_31217442_31217556_31217824_31217971_31218171_31218304_31218460_31218695_31218800_31219023_31219121_31219311_31219544_31219670_31219805_31219937_31224031_31224145_31224324_31224570_31224743_31224991_31225449_31225549_31225706_31225932_31226017_31226201_31226358_31226578_31226862_31227031_31227638_31227822_31227911_31228017_31229208_31229449_31229645_31229728_31229900_31230068_31230161_31230327_31230485_31230618_31230834_31231037_31231341_31231533_31231613_31231755_31231937_31232040_31232432_31232530_31233152_31233198_31233298_31233469_31233561_31233637_31234017_31234231_31234436_31234563_31234694_31234851_31234938_31235041_31235232_31235328_31235436
transcript_43112.known	chr5	-	2089	8	FSM	ENSMUSG00000029151.15	ENSMUST00000031037.14	2089	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	6.02037357305871	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGCAGTCCAATTCCTC	3744	False	NA	0	True	AATAAA	-19	NA	31250959	31243449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31244263_31245300_31245436_31245648_31245755_31245951_31246151_31246662_31246817_31246897_31247045_31247399_31247582_31250606
transcript_43115.known	chr5	+	1565	6	FSM	ENSMUSG00000053856.8	ENSMUST00000066544.5	1565	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	5.93295878967653	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGTGTGTGTGGGACCC	NA	False	NA	5	True	AATAAA	-17	NA	31265662	31269870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31265766_31266230_31266347_31266838_31267053_31267521_31267664_31268456_31268524_31268947
transcript_43117.known	chr5	+	670	5	FSM	ENSMUSG00000053856.8	ENSMUST00000202760.4	670	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	6.86931583201704	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTATCCACATGCGCTC	NA	False	NA	NA	False	NA	NA	NA	31265660	31269187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31265766_31266230_31266347_31267521_31267664_31268456_31268524_31268947
transcript_43119.known	chr5	+	1408	9	FSM	ENSMUSG00000062077.15	ENSMUST00000202769.2	1408	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	7.84219357067906	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGGCTCCTTTTGCTGTCC	NA	False	NA	8	True	AATAAA	-21	NA	31274077	31294974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31274422_31288385_31288559_31289331_31289504_31291393_31291490_31293386_31293621_31294096_31294120_31294231_31294357_31294464_31294558_31294826
transcript_4312.known	chr10	-	3862	25	FSM	ENSMUSG00000020074.8	ENSMUST00000219527.2	3862	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	85.6392222576133	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGTCTTTTATTGAAGT	NA	False	NA	1	True	AATAAA	-35	NA	62628065	62580240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62580602_62581041_62581248_62582679_62582866_62583122_62583244_62586325_62586473_62586715_62586796_62587521_62587634_62588952_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
transcript_43124.known	chr5	-	4552	19	FSM	ENSMUSG00000106864.4	ENSMUST00000088010.12	4552	19	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_18	84.1706086352278	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGAGCTTGGCTTGTCCTG	NA	False	NA	-26	True	AATAAA	-19	NA	31337488	31313348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31315112_31315486_31315595_31315686_31315840_31316404_31316534_31316777_31316866_31317043_31317206_31317291_31317437_31323229_31323360_31323704_31323731_31325039_31325149_31325332_31325445_31325594_31325823_31326394_31326494_31327179_31327258_31327523_31327619_31330125_31330406_31331111_31331434_31331575_31331840_31337227
transcript_43129.known	chr5	-	878	8	FSM	ENSMUSG00000107283.4	ENSMUST00000200864.4	878	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	132.664376283514	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCACAAACATGTATATACCC	NA	False	NA	-72	True	NA	NA	NA	31311536	31298884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311434
transcript_43131.known	chr5	-	903	8	FSM	ENSMUSG00000107283.4	ENSMUST00000202241.4	903	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	130.575335984048	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCCATGCTATGGGGTTG	NA	False	NA	11	True	NA	NA	NA	31311572	31298801	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31299195_31302043_31302097_31302583_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
transcript_43138.known	chr5	-	1653	7	FSM	ENSMUSG00000107283.4	ENSMUST00000200744.4	1653	7	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	140.104722737434	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGAATTGTGTCTTTA	NA	False	NA	NA	False	TTTAAA	-4	NA	31311566	31298006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31299195_31302043_31302097_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
transcript_43139.known	chr5	-	923	7	FSM	ENSMUSG00000107283.4	ENSMUST00000201491.2	923	7	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_6	59.0705792534095	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAGAGATGGTGCAGTGA	NA	False	NA	NA	False	NA	NA	NA	31311565	31301617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311534
transcript_43141.known	chr5	-	846	8	FSM	ENSMUSG00000107283.4	ENSMUST00000201353.4	846	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	135.765403906736	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGACACGCATTTGTAATTA	NA	False	NA	-47	True	NA	NA	NA	31311496	31298859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31299195_31302043_31302097_31302589_31302623_31302838_31302935_31303027_31303121_31303316_31303433_31311011_31311087_31311451
transcript_43142.known	chr5	+	2019	16	FSM	ENSMUSG00000029146.15	ENSMUST00000200730.4	2019	16	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	132.900564332888	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTACCTTTGGTTCCCTC	NA	False	NA	15	True	ATTAAA	-15	NA	31350637	31356238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31350810_31351212_31351288_31352139_31352258_31352549_31352624_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
transcript_43145.known	chr5	+	2018	15	FSM	ENSMUSG00000029146.15	ENSMUST00000031029.15	2018	15	0	0	0	0	multi-exon	TRUE	canonical	3	351	junction_8	24.4791664857432	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTGGTTCCCTCTCACTG	NA	False	NA	21	True	ATTAAA	-21	NA	31350570	31356244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31350810_31351212_31351288_31352139_31352258_31352758_31352824_31353089_31353201_31353294_31353386_31353520_31353609_31353824_31353895_31354326_31354420_31354513_31354718_31354964_31355091_31355206_31355285_31355413_31355489_31355579_31355622_31355701
transcript_43158.known	chr5	-	2025	13	FSM	ENSMUSG00000029145.13	ENSMUST00000077693.10	2025	13	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	56.1372326436643	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCTGCCTTTGTATCTT	NA	False	NA	0	True	AATAAA	-24	NA	31350774	31344901	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31349970_31350336
transcript_43159.known	chr5	-	1878	13	FSM	ENSMUSG00000029145.13	ENSMUST00000166769.8	1878	13	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_12	174.191864205983	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTGCTGCCTTTGTATCT	NA	False	NA	-1	True	AATAAA	-23	NA	31350483	31344902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925_31350115_31350336
transcript_43174.known	chr5	-	2228	4	FSM	ENSMUSG00000043059.17	ENSMUST00000114590.8	2228	4	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_2	5.79271573232759	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGTCTCTGCTGAATTG	NA	False	NA	-17	True	AATAAA	-16	NA	31359647	31356324	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31357492_31357578_31358167_31358926_31359083_31359330
transcript_43177.known	chr5	-	1966	12	FSM	ENSMUSG00000029145.13	ENSMUST00000114603.8	1966	12	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	55.8517814183514	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCCCATGACTCTGCTGCC	NA	False	NA	-10	True	AATAAA	-14	NA	31350358	31344911	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31345145_31345257_31345439_31346912_31347091_31347224_31347353_31347702_31347806_31347925_31348003_31348180_31348296_31348492_31348585_31348708_31348792_31348884_31349092_31349496_31349633_31349925
transcript_43178.known	chr5	-	2307	10	FSM	ENSMUSG00000029147.12	ENSMUST00000031032.11	2307	10	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_8	38.6382398699386	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGTGCTCATAGTGTCCTGC	NA	False	NA	-5	True	ACTAAA	-18	NA	31378031	31360011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31360629_31360915_31361019_31361373_31361504_31361796_31362032_31362341_31362474_31363381_31363798_31364906_31365040_31365356_31365443_31365730_31365801_31377646
transcript_43179.known	chr5	-	1797	1	FSM	ENSMUSG00000029147.12	ENSMUST00000200740.2	1797	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	31377909	31376112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31376100_31377900
transcript_43181.nic	chr5	+	2119	19	NIC	ENSMUSG00000029148.16	novel	2203	18	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	51	junction_2	109.789191939219	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTGTGCTTGCGGC	NA	False	NA	33	True	AATAAA	-21	NA	31398206	31408910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_31398347_31401106_31401177_31401261_31401336_31401509_31401633_31401801_31401904_31402220_31402311_31402706_31402748_31403094_31403190_31404685_31404770_31405027_31405087_31405241_31405341_31406892_31407026_31407232_31407339_31407433_31407485_31407573_31407710_31407887_31407942_31408024_31408089_31408235_31408292_31408368
transcript_43184.known	chr5	+	2203	18	FSM	ENSMUSG00000029148.16	ENSMUST00000031034.12	2203	18	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_13	30.9676692663879	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGTTGTGCTTGCGGC	NA	False	NA	33	True	AATAAA	-21	NA	31398207	31408910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31398347_31401106_31401336_31401509_31401633_31401801_31401904_31402220_31402311_31402706_31402748_31403094_31403190_31404685_31404770_31405027_31405087_31405241_31405341_31406892_31407026_31407232_31407339_31407433_31407485_31407573_31407710_31407887_31407942_31408024_31408089_31408235_31408292_31408368
transcript_43191.known	chr5	+	889	7	FSM	ENSMUSG00000029149.15	ENSMUST00000201937.4	889	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	11.9361728465293	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409068	31410541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410437
transcript_43192.nic	chr5	+	1032	6	NIC	ENSMUSG00000029149.15	novel	889	7	NA	NA	-26	0	intron_retention	FALSE	canonical	3	67	junction_1	12.63962024746	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409008	31410541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_31409159_31409262_31409448_31409535_31409596_31409708_31410134_31410238_31410347_31410437
transcript_43193.known	chr5	+	1027	6	FSM	ENSMUSG00000029149.15	ENSMUST00000201333.4	1027	6	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_3	7.52063827078527	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409034	31410541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31409448_31409535_31409596_31409708_31409916_31409998_31410134_31410238_31410347_31410437
transcript_43195.nic	chr5	+	1127	5	NIC	ENSMUSG00000029149.15	novel	1027	6	NA	NA	-17	0	intron_retention	FALSE	canonical	3	89	junction_4	5.61248608016091	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409017	31410541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_31409448_31409535_31409596_31409708_31410134_31410238_31410347_31410437
transcript_43197.nic	chr5	+	1240	4	NIC	ENSMUSG00000029149.15	novel	1027	6	NA	NA	-17	0	intron_retention	FALSE	canonical	3	89	junction_3	3.68178700572909	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCTGCCTGATTACAGTT	NA	False	NA	4	True	AATAAA	-16	NA	31409017	31410541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_31409448_31409535_31410134_31410238_31410347_31410437
transcript_43198.known	chr5	-	5403	48	FSM	ENSMUSG00000038564.12	ENSMUST00000041565.11	5403	48	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_37	14.3941162971073	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTGCATTCTTTGCTCAA	NA	False	NA	1	True	ATTAAA	-20	NA	31448451	31410620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31410769_31410896_31410989_31411158_31411313_31411562_31411662_31411745_31411806_31411996_31412093_31412594_31412715_31412908_31413020_31413898_31414016_31414232_31414320_31414674_31414739_31414860_31414971_31415157_31415257_31417737_31417868_31417966_31418077_31418270_31418452_31418782_31418848_31419174_31419269_31420263_31420407_31420709_31420827_31420914_31421051_31421121_31421220_31421750_31421841_31422661_31422807_31422986_31423108_31423258_31423338_31423518_31423768_31423978_31424057_31424577_31424671_31424938_31425024_31428983_31429092_31429330_31429468_31433195_31433364_31434212_31434326_31437762_31437849_31438009_31438114_31438305_31438360_31438687_31438850_31439899_31439996_31440376_31440501_31441347_31441563_31442595_31442684_31442802_31442883_31443106_31443173_31443421_31443462_31443920_31444034_31444237_31444382_31448317
transcript_43199.known	chr5	-	742	5	FSM	ENSMUSG00000038564.12	ENSMUST00000201426.4	742	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	11.2110436623893	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGCTGCATTCTTTGCT	NA	False	NA	-2	True	ATTAAA	-17	NA	31411997	31410623	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31410769_31410896_31410989_31411158_31411313_31411562_31411662_31411745
transcript_43201.known	chr5	+	3299	14	FSM	ENSMUSG00000062761.8	ENSMUST00000076264.8	3299	14	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	41.4283440690995	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGTCCTCCTTGCTG	7146	False	NA	16	True	AATAAA	-17	NA	31609778	31639098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31609922_31610498_31610558_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
transcript_43205.nic	chr5	+	3239	13	NIC	ENSMUSG00000062761.8	novel	3299	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	73	junction_1	77.4128093764563	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTCTGGTCCTCCTTGCTG	7147	False	NA	16	True	AATAAA	-17	NA	31609779	31639098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_31609922_31622789_31622978_31623575_31623681_31623935_31624020_31624665_31624791_31625497_31625585_31627701_31627801_31628340_31628509_31630113_31630306_31630796_31630899_31633016_31633080_31634124_31634224_31637313
transcript_43208.known	chr5	+	331	2	FSM	ENSMUSG00000062761.8	ENSMUST00000201599.2	331	2	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATTGGACAGTGCAGATAA	7229	False	NA	NA	False	NA	NA	NA	31609861	31610769	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31609922_31610498
transcript_4321.nic	chr10	-	2689	18	ISM	ENSMUSG00000020074.8	ENSMUST00000219527.2	3862	25	-41	8713	-41	0	5prime_fragment	FALSE	canonical	0	0	junction_4	91.878925898279	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCTGTAATTTCCAAGATA	NA	False	NA	-1	True	GATAAA	-30	NA	62628106	62588953	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
transcript_43216.known	chr5	+	3144	14	FSM	ENSMUSG00000064037.14	ENSMUST00000076949.13	3144	14	0	0	0	0	multi-exon	FALSE	canonical	3	859	junction_7	68.5179542833234	347	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTGGCTAAGATTCATT	NA	False	NA	NA	False	NA	NA	NA	31652084	31670248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31652228_31652861_31652956_31654654_31654695_31655683_31655751_31656610_31656649_31658197_31658277_31658455_31658551_31660734_31660781_31661255_31661403_31662296_31662380_31663536_31663577_31664817_31664909_31666642_31666751_31668175
transcript_43225.known	chr5	+	2499	14	FSM	ENSMUSG00000029141.17	ENSMUST00000202950.4	2499	14	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_11	21.8978262140197	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGTGATGATCATTCCC	NA	False	NA	11	True	AGTAAA	-21	NA	31684355	31711386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31703523_31703611_31705954_31706026_31708056_31708127_31711082
transcript_43226.nic	chr5	+	2513	14	NIC	ENSMUSG00000029141.17	novel	2499	14	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_11	26.2556840845094	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACTGAGGTGATGATCAT	NA	False	NA	7	True	AGTAAA	-17	NA	31684334	31711382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31703523_31703611_31705957_31706026_31708056_31708127_31711082
transcript_43227.known	chr5	+	2424	13	FSM	ENSMUSG00000029141.17	ENSMUST00000114533.9	2424	13	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	19.394300422776	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAACTGAGGTGATGATCA	NA	False	NA	6	True	AGTAAA	-16	NA	31684338	31711381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481_31693669_31697729_31697842_31701013_31701258_31705954_31706026_31708056_31708127_31711082
transcript_43229.known	chr5	+	2109	8	FSM	ENSMUSG00000029141.17	ENSMUST00000201858.4	2109	8	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	11.004637241469	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTTGTTTTGTTTTGTT	NA	False	NA	NA	False	ATTAAA	-20	NA	31684355	31694166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201_31692272_31693481
transcript_43230.nic	chr5	+	1508	7	ISM	ENSMUSG00000029141.17	ENSMUST00000201858.4	2109	8	-21	1832	-4	0	5prime_fragment	FALSE	canonical	3	90	junction_1	11.13552872566	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	31684334	31692334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_31685029_31685386_31685583_31687976_31688100_31689316_31689378_31689787_31689928_31691388_31691550_31692201
transcript_43234.known	chr5	-	2693	5	FSM	ENSMUSG00000053134.14	ENSMUST00000065388.11	2693	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	3.34477204006491	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTCCAATTCTTTTTTA	NA	False	NA	5	True	AATAAA	-25	NA	31684117	31671907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31673271_31675610_31675849_31677426_31677752_31679997_31680606_31683958
transcript_43236.known	chr5	-	1246	1	FSM	ENSMUSG00000053134.14	ENSMUST00000201692.2	1246	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	31684046	31682800	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31682800_31684000
transcript_43238.known	chr5	-	1042	8	FSM	ENSMUSG00000029136.10	ENSMUST00000031018.10	1042	8	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	7.57816411992848	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGGTGTGGCTACTCATC	NA	False	NA	-31	True	AATAAA	-23	NA	31854971	31781782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_31782001_31805064_31805254_31809152_31809245_31817250_31817416_31823062_31823126_31824204_31824269_31830656_31830790_31854853
transcript_4324.nic	chr10	-	2557	18	ISM	ENSMUSG00000020074.8	ENSMUST00000020268.7	4352	25	-51	9345	4	0	5prime_fragment	FALSE	canonical	0	0	junction_4	108.469535531449	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAGAAAGAGAAGA	NA	False	NA	-99	True	AAAAAG	-39	NA	62628061	62589051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627983
transcript_43245.known	chr5	+	839	5	FSM	ENSMUSG00000106918.4	ENSMUST00000202243.4	839	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	45.0832563153994	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATATCTCTATTCTTTA	NA	False	NA	NA	False	AATAAA	-24	NA	31771315	31812205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31771367_31773724_31773832_31786959_31787065_31807646_31807829_31811811
transcript_43246.known	chr5	+	478	4	FSM	ENSMUSG00000106918.4	ENSMUST00000031024.14	478	4	0	0	0	0	multi-exon	FALSE	canonical	3	1273	junction_1	440.713814926043	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTCTCTTAGAGGTAT	NA	False	NA	19	True	AATAAA	-22	NA	31771282	31779988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31771367_31771946_31771966_31773724_31773832_31779720
transcript_43249.known	chr5	+	638	4	FSM	ENSMUSG00000106918.4	ENSMUST00000201483.4	638	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	972.261624598372	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTATACTCTTGTCTCTTA	NA	False	NA	12	True	AATAAA	-15	NA	31771360	31779981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31771612_31771946_31771966_31773724_31773832_31779720
transcript_4325.nic	chr10	-	2591	18	ISM	ENSMUSG00000020074.8	ENSMUST00000219527.2	3862	25	-41	8811	-41	0	5prime_fragment	FALSE	canonical	0	0	junction_4	91.878925898279	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAGAAGAAAGAGAAGA	NA	False	NA	-99	True	AAAAAG	-39	NA	62628106	62589051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_62589193_62592261_62592454_62595872_62596059_62599218_62599303_62600102_62600314_62601045_62601213_62601720_62601835_62602335_62602562_62606633_62606796_62607714_62607845_62612346_62612540_62612627_62612743_62616219_62616414_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
transcript_43253.known	chr5	+	1888	12	FSM	ENSMUSG00000052139.19	ENSMUST00000201352.4	1888	12	0	0	0	0	multi-exon	FALSE	canonical	3	639	junction_9	56.490326824983	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTCCTGAAGGCTTC	5552	False	NA	35	True	AATAAA	-31	NA	31855027	32242306	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428_31988504_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
transcript_43257.nic	chr5	+	1506	11	NIC	ENSMUSG00000052139.19	novel	1888	12	NA	NA	-31	-52	combination_of_known_junctions	FALSE	canonical	1	7	junction_5	219.40148130767	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACTTTTCCAGGGAAAATA	5807	False	NA	16	True	AATAAA	-16	NA	31855282	32242254	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_32058398_32058509_32158704_32158805_32162053_32162125_32164578_32164662_32214854_32215009_32241924
transcript_43264.known	chr5	+	715	6	FSM	ENSMUSG00000052139.19	ENSMUST00000201202.4	715	6	0	0	0	0	multi-exon	FALSE	canonical	3	657	junction_3	63.9606128801155	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGTGATCGTTTAGCT	5882	False	NA	NA	False	AATAAA	-14	NA	31855357	31988560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_31855422_31859169_31859322_31888310_31888388_31942921_31943017_31977821_31978017_31988428
transcript_43266.known	chr5	+	5962	8	FSM	ENSMUSG00000014956.16	ENSMUST00000015100.15	5962	8	0	0	0	0	multi-exon	FALSE	canonical	3	1274	junction_2	51.5470856675363	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTGGTCCTAATAATATAA	2695	False	NA	NA	False	AATAAA	-32	NA	32616186	32652867	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_32616752_32635409_32635542_32638033_32638265_32640703_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
transcript_43269.nic	chr5	+	2385	6	NIC	ENSMUSG00000014956.16	novel	5962	8	NA	NA	-3	-5	intron_retention	FALSE	canonical	0	0	junction_1	552.155050687757	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACAACGTCTGAGTGATTAT	3071	False	NA	18	True	AGTAAA	-15	NA	32616562	32650095	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_32616752_32640769_32640809_32642602_32642675_32643224_32643377_32644914_32645050_32648297
transcript_43270.known	chr5	+	383	4	FSM	ENSMUSG00000014956.16	ENSMUST00000202078.2	383	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	632.928291532479	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCCACCGAAGAAAAGGTGAA	3074	False	NA	NA	False	NA	NA	NA	32616565	32648383	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_32616752_32640769_32640809_32642602_32642675_32648297
transcript_43272.known	chr5	+	2657	12	FSM	ENSMUSG00000014932.16	ENSMUST00000202543.4	2657	12	0	0	0	0	multi-exon	FALSE	canonical	3	599	junction_1	80.0238600782178	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAATAAAAAACAAACC	NA	False	NA	NA	False	NA	NA	NA	32768514	32842921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_32768720_32797674_32797948_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
transcript_43273.known	chr5	+	4586	12	FSM	ENSMUSG00000014932.16	ENSMUST00000072311.13	4586	12	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	199.348401357942	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTATTCTTTTCTGTT	NA	False	NA	8	True	AATAAA	-18	NA	32768527	32844401	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_32769182_32797674_32797948_32802351_32802452_32809000_32809100_32810306_32810411_32810500_32810651_32812449_32812606_32812771_32812952_32816378_32816456_32818095_32818250_32821612_32821745_32841894
transcript_43280.known	chr5	-	2183	8	FSM	ENSMUSG00000023452.20	ENSMUST00000061895.16	2183	8	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_2	53.5235976948867	322	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTAGCTTTGTATTTTGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	32942990	32893644	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32931739_32931811_32942892
transcript_43286.known	chr5	-	2084	7	FSM	ENSMUSG00000023452.20	ENSMUST00000142957.6	2084	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	252.221904062452	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAAACAAAAACT	NA	False	NA	NA	False	NA	NA	NA	32942983	32893665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_32894799_32895329_32895491_32895731_32895879_32896125_32896265_32896480_32896718_32922116_32922293_32942892
transcript_43296.known	chr5	-	9959	11	FSM	ENSMUSG00000054280.15	ENSMUST00000120129.9	9959	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_10	39.1414102965133	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTCAAGGCTATTTTGTTC	7053	False	NA	5	True	AATAAA	-26	NA	33011600	32947163	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_32951177_32952933_32953006_32977209_32977317_32977936_32978109_32979410_32979483_32984301_32988896_32989148_32989203_32992959_32993033_33001387_33001909_33009225_33009343_33011436
transcript_43297.known	chr5	+	1764	2	FSM	ENSMUSG00000018965.12	ENSMUST00000019109.8	1764	2	0	0	0	0	multi-exon	FALSE	canonical	3	1727	junction_1	0	546	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGCCTGGCCTTGATTT	NA	False	NA	9	True	AATAAA	-20	NA	33176159	33185310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_33176499_33183885
transcript_43298.known	chr5	+	333	1	FSM	ENSMUSG00000093885.3	ENSMUST00000137013.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	33233381	33233714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_33233400_33233700
transcript_43299.known	chr5	-	2045	6	FSM	ENSMUSG00000037379.8	ENSMUST00000046186.8	2045	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.4142135623731	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGAGGGTGACCTCCCACC	NA	False	NA	NA	False	AATAAA	-21	NA	33375799	33371270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_33371997_33372892_33373068_33373676_33373869_33373940_33374165_33374587_33374808_33375291
transcript_43300.nic	chr5	-	2321	10	NIC	ENSMUSG00000037373.13	novel	2436	10	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_9	265.745817476349	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCTGGCACCAGTTTTAAT	NA	False	NA	-14	True	AATAAA	-21	NA	33431956	33405066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_33406031_33406450_33406569_33406930_33407059_33407714_33407846_33408201_33408417_33416481_33416689_33418352_33418498_33424226_33424382_33426785_33426979_33431891
transcript_43302.known	chr5	+	2193	9	FSM	ENSMUSG00000079562.8	ENSMUST00000114449.7	2193	9	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_4	39.7106723690244	387	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGTGAGGTGTTTGTAA	NA	False	NA	20	True	AATAAA	-21	NA	33492852	33530640	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_33492990_33515783_33515967_33517695_33517900_33520038_33520162_33523065_33523143_33525981_33526091_33527774_33527909_33528957_33529154_33529610
transcript_43309.known	chr5	-	2009	6	FSM	ENSMUSG00000037339.18	ENSMUST00000065119.15	2009	6	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_2	26.6187903556867	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTAGATTCTTTTTGTCAG	NA	False	NA	-3	True	ATTAAA	-23	NA	33786979	33757690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_33758225_33764807_33765572_33767775_33767831_33771946_33772179_33786196_33786322_33786680
transcript_4331.nnic	chr10	-	761	6	NNC	ENSMUSG00000020074.8	novel	4352	25	NA	NA	4	-1583	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	172.50437675607	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAACTTGTTGCTGTTCC	NA	False	NA	NA	False	NA	NA	NA	62628061	62617827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_62618072_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627908
transcript_43316.known	chr5	+	2669	15	FSM	ENSMUSG00000037313.17	ENSMUST00000074849.13	2669	15	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_6	250.331341649912	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCAGGTCCTGTTGTTTA	NA	False	NA	35	True	ACTAAA	-23	NA	33815471	33829545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824386_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
transcript_43317.known	chr5	+	2187	15	FSM	ENSMUSG00000037313.17	ENSMUST00000114426.10	2187	15	0	0	0	0	multi-exon	FALSE	canonical	3	792	junction_7	83.9525193797308	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAACCCAGGTCCTGTTGT	NA	False	NA	32	True	ACTAAA	-20	NA	33815929	33829542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_33816072_33818565_33818729_33818864_33818990_33821164_33821247_33821610_33822200_33824036_33824090_33824407_33824512_33825306_33825398_33825477_33825580_33826005_33826083_33826161_33826206_33826821_33826992_33828747_33828855_33829008_33829130_33829325
transcript_43326.known	chr5	-	1906	8	FSM	ENSMUSG00000004642.14	ENSMUST00000057551.14	1906	8	0	0	0	0	multi-exon	FALSE	canonical	3	1110	junction_4	44.1837535937436	743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCCTATACTGTTTGG	NA	False	NA	-4	True	AATAAA	-22	NA	33809918	33797398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
transcript_43328.known	chr5	-	1578	7	FSM	ENSMUSG00000004642.14	ENSMUST00000101354.10	1578	7	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_4	432.7992863005	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCCCTATACTGTTTGG	NA	False	NA	-4	True	AATAAA	-22	NA	33809650	33797398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_33798273_33799244_33799327_33801080_33801231_33802843_33802982_33807086_33807192_33809306_33809424_33809538
transcript_43329.known	chr5	-	2369	4	FSM	ENSMUSG00000019295.9	ENSMUST00000140931.2	2369	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	31.3793987620328	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTACTTCATTTTGTTT	NA	False	NA	-2	True	AATAAA	-16	NA	33815243	33810562	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_33811959_33812056_33812217_33812666_33813142_33814905
transcript_4333.nnic	chr10	-	720	6	NNC	ENSMUSG00000020074.8	novel	4352	25	NA	NA	-41	-1583	at_least_one_novel_splicesite	FALSE	canonical	3	26	junction_1	144.804696056447	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAACTTGTTGCTGTTCC	NA	False	NA	NA	False	NA	NA	NA	62628106	62617827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_62618072_62619012_62619046_62619661_62619707_62621209_62621374_62626699_62626822_62627994
transcript_43330.known	chr5	-	2828	4	FSM	ENSMUSG00000019295.9	ENSMUST00000019439.9	2828	4	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_3	8.99382504215469	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTACTTCATTTTGTTTAAC	NA	False	NA	1	True	AATAAA	-19	NA	33815760	33810559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_33811959_33812056_33812217_33812666_33813142_33814966
transcript_43331.known	chr5	-	1027	8	FSM	ENSMUSG00000004642.14	ENSMUST00000075670.13	1027	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	406.856741572836	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTTTCCTATACTACTGT	NA	False	NA	NA	False	NA	NA	NA	33809689	33792295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_33792520_33799244_33799327_33801080_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
transcript_43332.known	chr5	-	1191	6	FSM	ENSMUSG00000004642.14	ENSMUST00000139518.8	1191	6	0	0	0	0	multi-exon	FALSE	canonical	3	1110	junction_2	48.586417855199	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCCTGTCCTCTGTTTTA	NA	False	NA	NA	False	NA	NA	NA	33809644	33800565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_33801231_33802843_33802982_33803353_33803414_33807086_33807192_33809306_33809424_33809538
transcript_43337.known	chr5	-	2580	11	FSM	ENSMUSG00000029111.8	ENSMUST00000030993.8	2580	11	0	0	0	0	multi-exon	FALSE	canonical	3	561	junction_5	32.3241395863834	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTCCACTTTAAATGCT	NA	False	NA	0	True	AATAAA	-29	NA	34093757	34055259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_34056254_34056355_34056456_34056625_34056898_34057756_34057869_34058534_34058624_34058931_34059002_34059088_34059220_34060714_34060805_34077835_34077998_34079189_34079362_34093369
transcript_4334.nic	chr10	-	1761	2	ISM	ENSMUSG00000047146.18	ENSMUST00000050826.14	13986	11	40101	29036	-25372	5491	internal_fragment	FALSE	canonical	3	122	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCCATATTATACACACCT	NA	False	NA	NA	False	AAAAAG	-6	NA	62675692	62669384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_62669408_62673954
transcript_43346.known	chr5	+	477	4	FSM	ENSMUSG00000070858.13	ENSMUST00000094869.12	477	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	12.3648246606609	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCCTGTATTTTGCTCT	NA	False	NA	9	True	AATAAA	-17	NA	34140776	34142357	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_34140909_34141100_34141241_34141395_34141485_34142241
transcript_43347.known	chr5	+	511	4	FSM	ENSMUSG00000070858.13	ENSMUST00000114383.8	511	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	4.98887651569859	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGTGTCCTGTATTTTG	NA	False	NA	5	True	AATAAA	-13	NA	34140813	34142353	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_34140984_34141100_34141241_34141395_34141485_34142241
transcript_4335.known	chr10	-	553	2	FSM	ENSMUSG00000047146.18	ENSMUST00000227494.2	553	2	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CGAAGCAATTAATTAAAAGA	NA	False	NA	-19	True	NA	NA	NA	62728765	62715651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62715913_62728473
transcript_43353.nic	chr5	-	2082	6	NIC	ENSMUSG00000079555.3	novel	2073	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	227.84327947078	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTGTGTTTTTGTTTTT	9401	False	NA	0	True	NA	NA	NA	34326796	34311223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_34311451_34320866_34321096_34323259_34323700_34324748_34325788_34326114_34326199_34326733
transcript_43355.known	chr5	-	2073	5	FSM	ENSMUSG00000079555.3	ENSMUST00000060049.8	2073	5	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_4	45.778679535347	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTGTGTTTTTGTTTTT	9954	False	NA	0	True	NA	NA	NA	34326871	34311223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_34311451_34320866_34321096_34323259_34323700_34324748_34325788_34326733
transcript_43356.known	chr5	+	3046	8	FSM	ENSMUSG00000029110.14	ENSMUST00000182709.8	3046	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	927.964241042219	382	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTCATTTATTCAGTTAT	NA	False	NA	28	True	AATAAA	-18	NA	34493632	34510783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
transcript_43358.known	chr5	+	2895	8	FSM	ENSMUSG00000029110.14	ENSMUST00000030992.13	2895	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1003.41470052242	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCTTTCATTTATTCAGT	NA	False	NA	25	True	AATAAA	-15	NA	34493723	34510780	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_34493829_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255_34507416_34508133_34508183_34508574
transcript_43362.known	chr5	+	1205	6	FSM	ENSMUSG00000029110.14	ENSMUST00000182970.8	1205	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	963.179028010889	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	34493671	34507871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_34493886_34499865_34500024_34504118_34504246_34506007_34506088_34506893_34506904_34507255
transcript_43364.known	chr5	+	5536	21	FSM	ENSMUSG00000037210.17	ENSMUST00000180376.8	5536	21	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	17.141980632354	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCAGTCTGGTTGCTTTC	1443	False	NA	16	True	AATACA	-15	NA	34527276	34643800	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_34527772_34567924_34568168_34577344_34577500_34578127_34578296_34583610_34583846_34588475_34588601_34593794_34593943_34596654_34596733_34597464_34597578_34597691_34597935_34600644_34600799_34600922_34601103_34602005_34602258_34615248_34615448_34616341_34616633_34618438_34618722_34619427_34619612_34621317_34621549_34622917_34623792_34633069_34633152_34642997
transcript_43367.known	chr5	-	2022	7	FSM	ENSMUSG00000059866.14	ENSMUST00000030991.14	2022	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	56.3661147223125	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGAGCTGGGCTGGA	NA	False	NA	-10	True	AATAAA	-19	NA	34671307	34653430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_34654295_34656523_34656644_34656831_34657081_34658251_34658342_34658801_34658865_34660880_34661172_34670962
transcript_43368.known	chr5	-	1987	6	FSM	ENSMUSG00000059866.14	ENSMUST00000087737.10	1987	6	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	11.160645142643	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGAGCTGGGCTGGA	NA	False	NA	-10	True	AATAAA	-19	NA	34671335	34653430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_34654295_34656523_34656644_34656831_34657081_34658251_34658342_34660880_34661172_34670962
transcript_4337.known	chr10	+	4122	21	FSM	ENSMUSG00000036875.16	ENSMUST00000131422.8	4122	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	65.9729300546823	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTGAGTCATTTTTCAT	NA	False	NA	59	True	AATAAA	-20	NA	62782804	62809964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_62782949_62784961_62785145_62786513_62786698_62789962_62790109_62791092_62791225_62792708_62792929_62793831_62793950_62794674_62794838_62794953_62795149_62795990_62796222_62797199_62797317_62797392_62797503_62798174_62798285_62799583_62799809_62800678_62800873_62802195_62802286_62802378_62802584_62803431_62803522_62805554_62805738_62807622_62807770_62809029
transcript_43370.nic	chr5	-	2238	5	NIC	ENSMUSG00000059866.14	novel	1987	6	NA	NA	-63	0	intron_retention	FALSE	canonical	3	117	junction_4	10.0623058987491	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGAGAGCTGGGCTGGA	NA	False	NA	-10	True	AATAAA	-19	NA	34671398	34653430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_34654295_34656523_34657081_34658251_34658342_34660880_34661172_34670962
transcript_43371.known	chr5	-	584	2	FSM	ENSMUSG00000059866.14	ENSMUST00000159102.2	584	2	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGAAGGAAGAGCTTGGAAT	NA	False	NA	NA	False	NA	NA	NA	34671004	34660629	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_34661172_34670962
transcript_43373.known	chr5	+	3761	15	FSM	ENSMUSG00000029106.15	ENSMUST00000114340.9	3761	15	0	0	0	0	multi-exon	FALSE	canonical	3	389	junction_14	43.2925501438664	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGGGGGCAACTTTGCAT	NA	False	NA	26	True	AATAAA	-27	NA	34731216	34789652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_34731258_34758667_34758883_34762033_34762197_34763171_34763324_34767535_34767617_34767833_34767984_34770631_34770776_34770862_34770962_34771527_34771705_34773906_34774159_34776693_34776796_34777388_34777479_34782622_34782780_34785758_34785858_34787813
transcript_43380.known	chr5	-	1906	13	FSM	ENSMUSG00000001082.13	ENSMUST00000114329.8	1906	13	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_12	91.0092715057098	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGCCTTTCCGTCTTACT	NA	False	NA	-7	True	AATAAA	-17	NA	34794536	34790992	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794131_34794270
transcript_43381.known	chr5	-	1754	13	FSM	ENSMUSG00000001082.13	ENSMUST00000114331.10	1754	13	0	0	0	0	multi-exon	TRUE	canonical	3	36	junction_12	99.4937183946806	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCTTTCCGTCTTACTATT	NA	False	NA	-4	True	AATAAA	-20	NA	34794556	34790989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792044_34792194_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794442
transcript_4339.known	chr10	+	603	2	FSM	ENSMUSG00000036875.16	ENSMUST00000131715.2	603	2	0	0	0	0	multi-exon	FALSE	canonical	3	331	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACCAGAGTTTGATACCT	NA	False	NA	NA	False	NA	NA	NA	62782858	62785474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_62782949_62784961
transcript_43391.nic	chr5	-	2074	12	NIC	ENSMUSG00000001082.13	novel	1907	13	NA	NA	2	0	intron_retention	FALSE	canonical	3	174	junction_11	68.0427672998254	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTTTCCGTCTTACTAT	NA	False	NA	-5	True	AATAAA	-19	NA	34794554	34790990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_34791359_34791474_34791565_34791636_34791685_34791766_34791858_34791934_34792307_34792394_34792504_34792713_34792876_34792952_34793112_34793364_34793469_34793753_34793851_34793937_34794128_34794270
transcript_43405.known	chr5	-	2702	18	FSM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_10	61.2066102226557	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGGCTGTGTGGTGTGTT	NA	False	NA	-5	True	AATAAA	-16	NA	34817492	34795879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_34795996_34796234_34796391_34796528_34796648_34798213_34798362_34798666_34798827_34801269_34801424_34802056_34802159_34804505_34804642_34805735_34805822_34806680_34806812_34807669_34807965_34809093_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
transcript_43410.nic	chr5	-	1017	7	ISM	ENSMUSG00000036693.13	ENSMUST00000041364.13	2702	18	0	13296	0	-7783	5prime_fragment	FALSE	canonical	3	566	junction_2	34.2851603791235	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAACCAAAACATACATCAG	NA	False	NA	NA	False	AATAAA	-3	NA	34817492	34809175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_34809226_34809639_34809763_34811226_34811362_34811779_34811914_34814084_34814227_34815218_34815354_34817194
transcript_43413.known	chr5	-	2981	8	FSM	ENSMUSG00000029103.17	ENSMUST00000030986.15	2981	8	0	0	0	0	multi-exon	FALSE	canonical	3	809	junction_2	73.9092107153867	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGGGAAAATGACCTGTG	NA	False	NA	-7	True	AATAAA	-21	NA	35263110	35248844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_35250731_35252193_35252371_35253319_35253403_35254874_35255034_35255496_35255618_35256500_35256623_35259738_35259884_35262822
transcript_43414.known	chr5	-	1573	7	FSM	ENSMUSG00000029103.17	ENSMUST00000147028.3	1573	7	0	0	0	0	multi-exon	FALSE	canonical	3	809	junction_2	75.6233356107021	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAACACTTGAAGACACCG	NA	False	NA	NA	False	NA	NA	NA	35263033	35250638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_35250731_35252193_35252371_35253319_35253403_35254874_35255618_35256500_35256623_35259738_35259884_35262822
transcript_43416.known	chr5	-	3790	11	FSM	ENSMUSG00000029097.12	ENSMUST00000030980.12	3790	11	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	7.3	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTAATAGAAATATTTAT	7626	False	NA	NA	False	TATAAA	-21	NA	35732414	35713546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_35715400_35719835_35719953_35721366_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730267_35731423_35731539_35731902
transcript_43423.nic	chr5	-	2086	9	ISM	ENSMUSG00000029097.12	ENSMUST00000030980.12	3790	11	-11	7565	-11	-7565	5prime_fragment	FALSE	canonical	3	72	junction_1	7.27044530960793	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGACAGAAGCATCTGATTG	7615	False	NA	NA	False	AATACA	-18	NA	35732425	35721111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_35721800_35722704_35722889_35723765_35723873_35726104_35726177_35727214_35727323_35728387_35728457_35730046_35730267_35731423_35731539_35731902
transcript_43424.nic	chr5	-	1103	3	ISM	ENSMUSG00000029097.12	ENSMUST00000030980.12	3790	11	-11	16255	-11	38	5prime_fragment	FALSE	canonical	3	86	junction_1	1	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATAAGGTTTACATTGTGT	7615	False	NA	NA	False	AATAAA	-19	NA	35732425	35729801	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_35730267_35731423_35731539_35731902
transcript_43425.known	chr5	-	1901	7	FSM	ENSMUSG00000029096.16	ENSMUST00000114233.3	1901	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCTAATCTAAGTTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	35836816	35818902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_35819609_35821306_35821422_35822757_35822791_35823393_35823589_35825526_35825750_35828375_35828476_35836287
transcript_43426.known	chr5	-	4246	18	FSM	ENSMUSG00000036553.17	ENSMUST00000201511.2	4246	18	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_17	16.3400287573917	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTGGTATCTTCTAGGT	NA	False	NA	-8	True	AGTAAA	-12	NA	35897331	35854526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_35854913_35857054_35857252_35857600_35857752_35857928_35858052_35859194_35859346_35860694_35860876_35863205_35864886_35866988_35867031_35868204_35868339_35871406_35871603_35872369_35872447_35873452_35873664_35874273_35874421_35875614_35875721_35876316_35876445_35878873_35878949_35881257_35881489_35897301
transcript_43435.nic	chr5	+	1927	15	NIC	ENSMUSG00000029095.18	novel	3042	19	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_8	26.0964654733947	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCCAAACAGCCTAAG	1501	False	NA	5	True	AAAACA	-8	NA	35915211	36015530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35989029_35989087_35990396_35990475_35994291_35994442_35998624_35998746_36006147_36006250_36014471_36014525_36015169
transcript_43436.nic	chr5	+	1969	15	NIC	ENSMUSG00000029095.18	novel	3042	19	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_12	19.8329760443437	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCCAAACAGCCTAAG	1501	False	NA	5	True	AAAACA	-8	NA	35915211	36015530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36000511_36000611_36006147_36006250_36014471_36014525_36015169
transcript_4344.nnic	chr10	-	1559	10	NNC	ENSMUSG00000020069.17	novel	2213	10	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_9	143.298789980504	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5753	False	NA	-6	True	AATAAA	-15	NA	62859701	62851206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859416
transcript_43442.nic	chr5	+	1768	13	NIC	ENSMUSG00000029095.18	novel	2579	18	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_11	18.719234018042	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCCAAACAGCCTAAG	1501	False	NA	5	True	AAAACA	-8	NA	35915211	36015530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_35915405_35955796_35955941_35959703_35959888_35964382_35964499_35966526_35966654_35969469_35969564_35981368_35981457_35985467_35985527_35990396_35990475_35994291_35994442_35998624_35998746_36014471_36014525_36015169
transcript_43445.known	chr5	-	3884	12	FSM	ENSMUSG00000029192.18	ENSMUST00000171385.8	3884	12	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_11	14.7609043598508	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTCACTGTGTACTTTGG	8784	False	NA	-1	True	AATAAA	-21	NA	36687967	36647948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_36650459_36652361_36652621_36662368_36662479_36664921_36665051_36665703_36665776_36669797_36669893_36671382_36671464_36676616_36676724_36677787_36677906_36680270_36680354_36682273_36682393_36687766
transcript_43447.nnic	chr5	-	1295	3	NNC	ENSMUSG00000029190.20	novel	2014	2	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	2	47	junction_1	14.5	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTGTATTATGTTTTA	NA	False	NA	NA	False	AATAAA	-21	NA	36853313	36828742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_36829428_36830091_36830587_36853198
transcript_43448.known	chr5	-	6677	9	FSM	ENSMUSG00000029190.20	ENSMUST00000031091.13	6677	9	0	0	0	0	multi-exon	FALSE	canonical	2	71	junction_5	5.18260311040697	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGTTGTTTTTATTTAT	NA	False	NA	45	True	AATAAA	-13	NA	36853281	36757828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_36760148_36761854_36761953_36765281_36765391_36770589_36773879_36776086_36776169_36777007_36777075_36787000_36787136_36830091_36830587_36853198
transcript_43449.known	chr5	-	1273	1	FSM	ENSMUSG00000060708.5	ENSMUST00000071949.5	1273	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTTCCTTCTGGAGAT	NA	False	NA	-4	True	ATTAAA	-19	NA	36905994	36904721	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_36904700_36906000
transcript_43451.known	chr5	-	1648	2	FSM	ENSMUSG00000055302.6	ENSMUST00000068795.4	1648	2	0	0	0	0	multi-exon	FALSE	canonical	3	1678	junction_1	0	1255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGCCTGTGTTTAGTTTA	NA	False	NA	41	True	AAGAAA	-22	NA	36954116	36952210	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_36953289_36953546
transcript_43452.known	chr5	-	3330	19	FSM	ENSMUSG00000029119.10	ENSMUST00000031002.10	3330	19	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_7	26.3739138796905	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCATGTTCAAGCCAGA	949	False	NA	-13	True	AATAAA	-21	NA	36987997	36964264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36970290_36970505_36970612_36970724_36971075_36971323_36971672_36971865_36972662_36972938_36973402_36973588_36974899_36975042_36975805_36975997_36978225_36978425_36979180_36979359_36981435_36981552_36983383_36983557_36985207_36985314_36986971_36987119_36987781
transcript_43457.nnic	chr5	-	731	5	NNC	ENSMUSG00000029119.10	novel	3330	19	NA	NA	2203	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	96.5012953280939	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCATGTTCAAGCCAGA	NA	False	NA	-13	True	AATAAA	-21	NA	36968104	36964264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_36964555_36965129_36965248_36966347_36966461_36967635_36967753_36968011
transcript_4346.known	chr10	-	2213	10	FSM	ENSMUSG00000020069.17	ENSMUST00000020263.14	2213	10	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_6	80.8621750760186	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTCTGTCCTAGAATAT	5781	False	NA	-15	True	AATAAA	-15	NA	62859673	62850442	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62854538_62854678_62855171_62855307_62859498
transcript_43460.known	chr5	-	3787	8	FSM	ENSMUSG00000039474.14	ENSMUST00000043964.13	3787	8	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_7	10.259888211986	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGCCTTCTGGTTTGAT	NA	False	NA	1	True	AATAAA	-18	NA	37146549	37123447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_37126023_37128901_37129054_37130529_37130611_37131077_37131249_37132814_37132960_37134227_37134311_37139401_37139642_37146209
transcript_43461.nic	chr5	+	2548	13	NIC	ENSMUSG00000063646.19	novel	2496	20	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	99	junction_1	26.6327909832138	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	NA	False	NA	17	True	AATAAA	-20	NA	37185659	37282643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_37185944_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
transcript_43462.nnic	chr5	+	2417	13	NNC	ENSMUSG00000063646.19	novel	2496	20	NA	NA	-510	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	50.1671511604512	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	NA	False	NA	17	True	AATAAA	-20	NA	37203855	37282643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_37204009_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
transcript_43463.nic	chr5	+	2372	13	NIC	ENSMUSG00000063646.19	novel	2496	20	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_1	48.6269101310055	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	NA	False	NA	17	True	AATAAA	-20	NA	37204781	37282643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_37204890_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
transcript_43464.known	chr5	+	2383	13	FSM	ENSMUSG00000063646.19	ENSMUST00000043794.11	2383	13	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	48.883080463035	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	NA	False	NA	17	True	AATAAA	-20	NA	37208200	37282643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_37208320_37242579_37242843_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
transcript_43465.nnic	chr5	+	2105	12	Fusion	ENSMUSG00000063646.19_ENSMUSG00000113373.2	novel	516	2	NA	NA	2833	0	multi-exon	FALSE	canonical	3	13	junction_1	47.5912346954217	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	3214	False	NA	17	True	AATAAA	-20	NA	37245546	37282643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr5_+_37245651_37248470_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
transcript_43467.nic	chr5	+	2077	11	ISM	ENSMUSG00000063646.19	ENSMUST00000121010.9	2496	20	5681	22702	-29	0	internal_fragment	FALSE	canonical	3	147	junction_1	11.74265728019	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGCCTTTTTTATTTGTG	2451	False	NA	17	True	AATAAA	-20	NA	37248394	37282643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_37248966_37257979_37258190_37259108_37259229_37262156_37262304_37262954_37263096_37264602_37264663_37274785_37274915_37276122_37276252_37278284_37278369_37280623_37280687_37282220
transcript_43468.known	chr5	+	849	3	FSM	ENSMUSG00000063646.19	ENSMUST00000173836.8	849	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	10.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGCAGGAGATCCTGGA	NA	False	NA	NA	False	NA	NA	NA	37185678	37248791	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_37185944_37242579_37242843_37248470
transcript_43470.known	chr5	+	950	1	FSM	ENSMUSG00000063646.19	ENSMUST00000201223.2	950	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAAAAATAAATAAAA	2480	False	NA	NA	False	NA	NA	NA	37248423	37249373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_37248400_37249400
transcript_43471.known	chr5	+	4091	20	FSM	ENSMUSG00000050248.12	ENSMUST00000056365.9	4091	20	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_14	7.49034466215639	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTATAAGAGTGGACCTCAT	8842	False	NA	3	True	CATAAA	-19	NA	37495842	37582399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_37496072_37504783_37504853_37505931_37506119_37507682_37507793_37508464_37508519_37514743_37514879_37520860_37521001_37527867_37528193_37535526_37535767_37537753_37537930_37540421_37540582_37544028_37544484_37549336_37549542_37550423_37550541_37567577_37567806_37573070_37573292_37574748_37574837_37576467_37576671_37579181_37579284_37581752
transcript_43472.nic	chr5	+	948	5	ISM	ENSMUSG00000050248.12	ENSMUST00000101258.5	2796	12	-132	36314	-23	-36314	5prime_fragment	FALSE	canonical	3	29	junction_3	3.16227766016838	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGGAGGAAGAGTTTATTTC	8819	False	NA	NA	False	NA	NA	NA	37495819	37508794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_37496072_37504783_37504853_37505931_37506119_37507682_37507793_37508464
transcript_43473.known	chr5	-	1935	2	FSM	ENSMUSG00000048450.11	ENSMUST00000063116.10	1935	2	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGGGTTTAGTTGTG	NA	False	NA	NA	False	AATAAA	-25	NA	37981927	37977828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_37979045_37981208
transcript_43475.known	chr5	+	3002	11	FSM	ENSMUSG00000029125.15	ENSMUST00000114126.9	3002	11	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_9	9.96794863550169	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAGATTGTGGACTTAGA	NA	False	NA	NA	False	CATAAA	-13	NA	38196085	38295109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_38196844_38249856_38249925_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293606
transcript_43476.known	chr5	+	1471	11	FSM	ENSMUSG00000029125.15	ENSMUST00000031008.13	1471	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_10	31.04834939252	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTATTGCAGTCAGTGAG	NA	False	NA	13	True	AATAAA	-13	NA	38196576	38294161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_38196844_38249856_38249925_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293698
transcript_43478.known	chr5	+	900	10	FSM	ENSMUSG00000029125.15	ENSMUST00000154929.5	900	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	32.4550971857016	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAATGCAGGTTTCCGAGTG	NA	False	NA	NA	False	NA	NA	NA	38196626	38293616	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_38196844_38262221_38262338_38263907_38263986_38264169_38264237_38273428_38273542_38278554_38278644_38284275_38284335_38285387_38285458_38292565_38292647_38293606
transcript_43480.known	chr5	-	2581	5	FSM	ENSMUSG00000029126.8	ENSMUST00000031009.8	2581	5	0	0	0	0	multi-exon	TRUE	canonical	3	5	junction_1	2.8613807855649	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGGACTGTCTGTACTCA	NA	False	NA	1	True	AATAAA	-25	NA	38317251	38294535	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_38296217_38302052_38302164_38312951_38313069_38316220_38316376_38316734
transcript_43482.known	chr5	-	1654	6	FSM	ENSMUSG00000029127.16	ENSMUST00000143436.8	1654	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	15.2918278828922	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTTTTATATTTTGTAA	NA	False	NA	NA	False	AATAAA	-19	NA	38377769	38357592	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_38358658_38360839_38361002_38361088_38361172_38363232_38363307_38373790_38373958_38377666
transcript_43487.nic	chr5	+	1648	10	NIC	ENSMUSG00000067367.10	novel	1563	9	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	190	junction_2	843.03156656333	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTCTGTATCTATGATAA	NA	False	NA	13	True	AATAAA	-14	NA	38377812	38391640	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_38377980_38380477_38380572_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
transcript_43488.nic	chr5	+	1652	10	NIC	ENSMUSG00000067367.10	novel	1563	9	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	182	junction_2	844.746612604142	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTCTGTATCTATGATAA	NA	False	NA	13	True	AATAAA	-14	NA	38377812	38391640	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_38377980_38380477_38380576_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
transcript_4349.nnic	chr10	-	1514	10	NNC	ENSMUSG00000020069.17	novel	2168	10	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_9	155.339612017439	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5753	False	NA	-6	True	AATAAA	-15	NA	62859701	62851206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864_62854005_62854538_62854678_62855171_62855307_62859416
transcript_43496.known	chr5	+	1563	9	FSM	ENSMUSG00000067367.10	ENSMUST00000087514.9	1563	9	0	0	0	0	multi-exon	FALSE	canonical	3	2026	junction_5	151.553981719386	982	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTATGATAACAAATTCTTG	NA	False	NA	23	True	AATAAA	-24	NA	38377813	38391650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_38377980_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904_38388335_38388616_38388704_38390585_38390672_38391334
transcript_4350.known	chr10	-	2168	10	FSM	ENSMUSG00000020069.17	ENSMUST00000118898.8	2168	10	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_6	104.074166337115	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTCTGTCCTAGAATAT	5781	False	NA	-15	True	AATAAA	-15	NA	62859673	62850442	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864_62854005_62854538_62854678_62855171_62855307_62859498
transcript_43506.known	chr5	+	873	7	FSM	ENSMUSG00000067367.10	ENSMUST00000130721.8	873	7	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_2	913.07374656523	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACGGCAGAAAAACAGGAAGA	NA	False	NA	38	True	NA	NA	NA	38377825	38388047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_38377980_38380477_38380576_38381970_38382142_38383232_38383348_38385198_38385307_38385393_38385478_38387904
transcript_43512.known	chr5	+	726	5	FSM	ENSMUSG00000067365.12	ENSMUST00000119047.8	726	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	95.0167748347627	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCCTTTTTATACTATTTA	NA	False	NA	11	True	NA	NA	NA	38417727	38425251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_38417837_38419340_38419483_38422155_38422315_38424522_38424629_38425041
transcript_43513.known	chr5	+	1291	5	FSM	ENSMUSG00000067365.12	ENSMUST00000087511.10	1291	5	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_4	19.5751756058534	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTTAATGCAAATTTGG	NA	False	NA	NA	False	AATAAA	-25	NA	38417528	38426978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_38417837_38419340_38419483_38422155_38422315_38424522_38424629_38426402
transcript_43515.known	chr5	+	3141	6	FSM	ENSMUSG00000051596.16	ENSMUST00000114099.6	3141	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	1.93907194296653	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAGGAATTGCCTCTTGC	NA	False	NA	NA	False	NA	NA	NA	38434747	38461551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_38435169_38445240_38445378_38451832_38451892_38455200_38455332_38456966_38457875_38460066
transcript_43517.known	chr5	-	3089	15	FSM	ENSMUSG00000005103.13	ENSMUST00000005234.13	3089	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	233.56139122164	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGGATCACTGGCTCTAT	NA	False	NA	-7	True	ATTAAA	-16	NA	38719149	38684155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_38685256_38686867_38687013_38687279_38687454_38688357_38688469_38690826_38690915_38692526_38692684_38694481_38694570_38697355_38697590_38697846_38697928_38698143_38698222_38703016_38703198_38704286_38704435_38708719_38708811_38718422_38718545_38718858
transcript_43520.known	chr5	-	2139	15	FSM	ENSMUSG00000005103.13	ENSMUST00000201260.4	2139	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	308.085372808862	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGCATGTGGAGCGTAC	NA	False	NA	-7	True	AATAAA	-11	NA	38718978	38684929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_38685256_38686867_38687013_38687279_38687454_38688357_38688469_38690826_38690915_38692526_38692684_38694481_38694570_38697355_38697590_38697846_38697928_38698143_38698222_38703016_38703198_38704286_38704435_38708719_38708811_38718422_38718540_38718858
transcript_43521.known	chr5	-	6804	4	FSM	ENSMUSG00000046572.11	ENSMUST00000057258.11	6804	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	106.871677986057	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGCTCTCTCATTTCG	NA	False	NA	-5	True	AATAAA	-16	NA	38842093	38825828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_38832197_38839827_38840126_38840535_38840602_38842021
transcript_43524.known	chr5	-	1684	2	FSM	ENSMUSG00000051022.8	ENSMUST00000053116.7	1684	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATGTTGCTCCTCTCTTT	NA	False	NA	NA	False	NA	NA	NA	39801977	39771281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_39772748_39801759
transcript_43526.known	chr5	-	1697	8	FSM	ENSMUSG00000029128.13	ENSMUST00000201422.4	1697	8	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	195.851880725393	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGATTTTCATT	NA	False	NA	-4	True	AATAAA	-14	NA	41865464	41782318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_41783206_41784329_41784425_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
transcript_43530.known	chr5	-	1635	7	FSM	ENSMUSG00000029128.13	ENSMUST00000031011.12	1635	7	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_3	45.374980869295	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGATTTTCATT	NA	False	NA	-4	True	AATAAA	-14	NA	41865497	41782318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_41783206_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
transcript_43531.known	chr5	-	863	7	FSM	ENSMUSG00000029128.13	ENSMUST00000202913.2	863	7	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_1	193.008419505471	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTTTTGGGATTTTCAT	NA	False	NA	-5	True	AATAAA	-13	NA	41865500	41782319	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_41782432_41790515_41790594_41793148_41793253_41845063_41845194_41855732_41855822_41860780_41860878_41865247
transcript_43533.nnic	chr5	-	1593	6	NIC	ENSMUSG00000029128.13	novel	1635	7	NA	NA	-44	0	combination_of_known_splicesites	FALSE	canonical	3	38	junction_4	194.631549343882	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTGGGATTTTCATT	NA	False	NA	-4	True	AATAAA	-14	NA	41865544	41782318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_41783206_41790515_41790594_41793148_41793253_41845063_41845194_41860780_41860878_41865247
transcript_43539.known	chr5	-	372	2	FSM	ENSMUSG00000104846.2	ENSMUST00000197178.2	372	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAATTTTCCAGCTCTCTC	NA	False	NA	NA	False	GATAAA	-30	NA	43512602	43510389	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_43510700_43512540
transcript_4354.known	chr10	-	1633	9	FSM	ENSMUSG00000020069.17	ENSMUST00000140743.8	1633	9	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_7	118.49762655851	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5458	False	NA	-6	True	AATAAA	-15	NA	62859996	62851206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853819_62854005_62855171_62855307_62859498
transcript_43546.known	chr5	-	2814	11	FSM	ENSMUSG00000039753.17	ENSMUST00000196483.5	2814	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	167.474057692527	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTTGTGTTGTGATTT	8869	False	NA	-1	True	AATAAA	-28	NA	43939451	43901957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_43902718_43908203_43908353_43915563_43916287_43917084_43917168_43918048_43918195_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
transcript_43548.known	chr5	+	2856	9	FSM	ENSMUSG00000029082.18	ENSMUST00000101237.8	2856	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_6	2.97647022494766	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTATGTGAGTTGTGTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	43976232	44001328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_43976436_43977819_43977947_43978951_43979088_43979608_43979692_43982669_43982747_43983605_43983699_43994802_43994890_43997772_43997833_43999338
transcript_43550.known	chr5	-	4237	9	FSM	ENSMUSG00000039753.17	ENSMUST00000087465.11	4237	9	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_1	35.8704265377483	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTGTCTGAGCATTCAT	8857	False	NA	NA	False	NA	NA	NA	43939463	43913246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_43916287_43917084_43917168_43918048_43918198_43920158_43920285_43922650_43922834_43925405_43925593_43928078_43928175_43930785_43931002_43939306
transcript_43552.known	chr5	+	3270	8	FSM	ENSMUSG00000029084.6	ENSMUST00000030964.6	3270	8	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_4	17.0353773551587	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAGTGCTTGGATTCAATTC	NA	False	NA	NA	False	ATTAAA	-18	NA	44025894	44069717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_44026463_44057674_44057805_44058762_44058899_44060936_44061023_44063505_44063580_44064854_44064948_44065264_44065352_44067621
transcript_43554.known	chr5	+	774	1	FSM	ENSMUSG00000033036.10	ENSMUST00000122204.3	774	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	213	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAACAACAACAAAAAA	NA	False	NA	NA	False	AATAAA	-36	NA	44070485	44071259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_44070500_44071300
transcript_43555.known	chr5	-	1161	2	FSM	ENSMUSG00000048373.9	ENSMUST00000061299.9	1161	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCACTGTTTCCTTCTGAT	NA	False	NA	NA	False	AATAAA	-21	NA	44139106	44136201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_44137311_44139054
transcript_43556.known	chr5	-	3664	27	FSM	ENSMUSG00000029086.16	ENSMUST00000087441.11	3664	27	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	5.3433861125628	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTTGGTGTTTGGTCCTT	NA	False	NA	NA	False	AATAAA	-16	NA	44259023	44150963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_44151839_44152416_44152457_44158118_44158188_44158611_44158636_44159127_44159244_44162227_44162321_44163506_44163576_44164364_44164446_44168536_44168591_44170217_44170311_44171437_44171510_44172099_44172247_44173907_44173993_44175634_44175739_44178149_44178274_44184024_44184178_44186951_44187112_44190285_44190350_44191688_44191764_44194765_44194984_44201658_44201749_44202861_44202926_44204839_44204961_44213219_44213426_44220467_44220527_44251736_44252111_44258989
transcript_43561.known	chr5	-	1234	7	FSM	ENSMUSG00000015806.13	ENSMUST00000120867.8	1234	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	385.068680742655	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	False	NA	-19	True	AATAAA	-15	NA	45607307	45591394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607223
transcript_43562.known	chr5	-	1380	7	FSM	ENSMUSG00000015806.13	ENSMUST00000015950.12	1380	7	0	0	0	0	multi-exon	FALSE	canonical	3	819	junction_4	94.8542741964395	1214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	False	NA	-19	True	AATAAA	-15	NA	45607578	45591394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607348
transcript_43564.known	chr5	-	1232	7	FSM	ENSMUSG00000015806.13	ENSMUST00000118097.8	1232	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	385.068680742655	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTGTCTTTTTCACTCA	NA	False	NA	-19	True	AATAAA	-15	NA	45607513	45591394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_45592021_45595184_45595269_45596626_45596736_45600778_45600920_45601988_45602086_45604917_45605011_45607431
transcript_43576.known	chr5	+	2267	13	FSM	ENSMUSG00000039682.13	ENSMUST00000046122.11	2267	13	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_5	182.488412874169	3468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAGTTCTGTGAAGGGTC	NA	False	NA	35	True	AATAAA	-34	NA	45650715	45670033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744_45657910_45660721_45660881_45662064_45662190_45663515_45663605_45664448_45664552_45666779_45666860_45668449_45668560_45669222
transcript_4358.nic	chr10	-	1328	9	NIC	ENSMUSG00000020069.17	novel	1633	9	NA	NA	-63	0	combination_of_known_junctions	FALSE	canonical	3	177	junction_7	135.128411150283	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTGATGTTGCTACTTTT	5718	False	NA	-6	True	AATAAA	-15	NA	62859736	62851206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_62851494_62851580_62851674_62851858_62851955_62852185_62852322_62853000_62853117_62853302_62853390_62853864_62854005_62855171_62855307_62859498
transcript_436.known	chr1	-	716	1	FSM	ENSMUSG00000041859.11	ENSMUST00000188112.2	716	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCATGCTTTGTGCTTTAA	NA	False	NA	-12	True	AGTAAA	-24	NA	20873945	20873229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_20873200_20873900
transcript_43600.known	chr5	+	838	6	FSM	ENSMUSG00000039682.13	ENSMUST00000137699.3	838	6	0	0	0	0	multi-exon	FALSE	canonical	3	2266	junction_5	195.982039993465	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCACTGTGGGCAGTGCC	NA	False	NA	NA	False	NA	NA	NA	45650845	45658087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_45650904_45652507_45652624_45654261_45654317_45654670_45654777_45655775_45655936_45657744
transcript_43602.known	chr5	+	4560	4	FSM	ENSMUSG00000015804.15	ENSMUST00000156481.8	4560	4	0	0	0	0	multi-exon	FALSE	canonical	3	1736	junction_3	82.366390124991	416	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCCAGTGTCTTCAGCTT	7332	False	NA	NA	False	ATTAAA	-22	NA	45677570	45686618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_45677827_45679777_45679845_45680763_45680877_45682494
transcript_43604.known	chr5	-	1007	1	FSM	ENSMUSG00000104986.2	ENSMUST00000196242.2	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATGTGTGTGTGTGTCAT	5102	False	NA	NA	False	AATAAA	-32	NA	45827050	45826043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_45826000_45827000
transcript_43605.known	chr5	-	5708	7	FSM	ENSMUSG00000015882.19	ENSMUST00000045586.13	5708	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	22.5197444232586	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAGATGTTTTTCAAAGT	NA	False	NA	-4	True	AATAAA	-21	NA	46014957	45854522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_45859340_45893072_45893167_45904397_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014688
transcript_43606.known	chr5	-	5463	6	FSM	ENSMUSG00000015882.19	ENSMUST00000190036.7	5463	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	19.1562000407179	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTTCAGATGTTTTTCAA	NA	False	NA	-7	True	AATAAA	-18	NA	46014809	45854525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_45859340_45904397_45904650_45932733_45932864_45933761_45933842_45952634_45952701_46014688
transcript_43612.known	chr5	+	3703	21	FSM	ENSMUSG00000015880.14	ENSMUST00000117396.3	3703	21	0	0	0	0	multi-exon	FALSE	canonical	3	453	junction_14	43.4953733171702	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAACAGTTGTTCTGAGA	NA	False	NA	NA	False	ATTAAA	-18	NA	45827260	45857888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_45827476_45828361_45828566_45829614_45829844_45831699_45831846_45832110_45832196_45833290_45833484_45833933_45834084_45835688_45835830_45837189_45837314_45838713_45838798_45839068_45839249_45844653_45844765_45845902_45846023_45848943_45849169_45850498_45850681_45851093_45851269_45852995_45853158_45853374_45853511_45853814_45853887_45856182_45856253_45857189
transcript_43616.known	chr5	+	3265	6	FSM	ENSMUSG00000031558.16	ENSMUST00000172998.8	3265	6	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_5	11.9833217431562	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAAAAAAAAACTT	NA	False	NA	NA	False	NA	NA	NA	48140495	48340499	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_48142561_48145180_48145253_48146461_48146534_48157650_48157723_48327496_48327569_48339587
transcript_43618.known	chr5	-	2257	8	FSM	ENSMUSG00000029088.17	ENSMUST00000166924.8	2257	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTGTGCTATAGGTCTT	9407	False	NA	NA	False	AATAAA	-27	NA	48757024	48546843	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_48548299_48553346_48553410_48553992_48554098_48555820_48555929_48567136_48567208_48576553_48576624_48639872_48639998_48756764
transcript_43621.nic	chr5	+	1612	9	NIC	ENSMUSG00000029089.9	novel	1616	9	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_2	28.7565209995924	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTAGTTCTACATATAT	NA	False	NA	13	True	ATTAAA	-21	NA	48529685	48546187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_48529838_48531521_48531590_48531714_48531881_48532884_48532953_48534416_48534508_48536671_48536807_48537465_48537574_48539128_48539210_48545444
transcript_43622.known	chr5	+	1616	9	FSM	ENSMUSG00000029089.9	ENSMUST00000030968.7	1616	9	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_5	8.92941067484299	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTAGTTCTACATATAT	NA	False	NA	13	True	ATTAAA	-21	NA	48529670	48546187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48534416_48534508_48536671_48536807_48537465_48537574_48539128_48539210_48545444
transcript_43627.nnic	chr5	+	1493	8	NIC	ENSMUSG00000029089.9	novel	1616	9	NA	NA	15	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_6	33.3717465738273	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTAGTTCTACATATAT	NA	False	NA	13	True	ATTAAA	-21	NA	48529685	48546187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48534416_48534508_48536671_48536807_48539128_48539210_48545444
transcript_43628.known	chr5	+	1422	8	FSM	ENSMUSG00000029089.9	ENSMUST00000200566.5	1422	8	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	26.2717354134182	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTGTAGTTCTACATATATG	NA	False	NA	14	True	ATTAAA	-22	NA	48529774	48546188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48536671_48536807_48537465_48537574_48539128_48539210_48545444
transcript_43632.nnic	chr5	+	1402	7	NIC	ENSMUSG00000029089.9	novel	1616	9	NA	NA	15	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	41.7588979207492	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTAGTTCTACATATAT	NA	False	NA	13	True	ATTAAA	-21	NA	48529685	48546187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_48529838_48531521_48531590_48531725_48531881_48532884_48532953_48536671_48536807_48539128_48539210_48545444
transcript_43634.known	chr5	-	4480	19	FSM	ENSMUSG00000029090.13	ENSMUST00000030971.7	4480	19	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_6	33.7942668086734	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCATTGTGCTGGTGGCTT	NA	False	NA	-10	True	AATAAA	-14	NA	50216348	50117297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_50118857_50118989_50119086_50121032_50121179_50128031_50128156_50129292_50129418_50136284_50136494_50136701_50136916_50144815_50145020_50147466_50147629_50155556_50155713_50156474_50156677_50159196_50159362_50164090_50164305_50166677_50166839_50168832_50168905_50170734_50170807_50174168_50174241_50183048_50183121_50215893
transcript_43635.known	chr5	-	2375	14	FSM	ENSMUSG00000029169.12	ENSMUST00000200186.5	2375	14	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	209.215072940651	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACTTCAATCCAAGGAATAT	NA	False	NA	NA	False	NA	NA	NA	52347719	52308034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_52308121_52309151_52309322_52311378_52311570_52314796_52314912_52317571_52317764_52318234_52318344_52318928_52319079_52319870_52319958_52324042_52324211_52327262_52327482_52328765_52328926_52338323_52338518_52341809_52342246_52347621
transcript_43636.nic	chr5	-	372	2	ISM	ENSMUSG00000029169.12	ENSMUST00000199321.5	2550	12	-68	31084	-43	5	5prime_fragment	FALSE	canonical	3	854	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAGGAAAAAGAATTGAG	NA	False	NA	NA	False	NA	NA	NA	52347899	52342151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_52342246_52347621
transcript_43637.nic	chr5	+	1526	4	ISM	ENSMUSG00000097145.6	ENSMUST00000198720.2	837	6	-58	47912	-17	0	5prime_fragment	FALSE	canonical	2	5	junction_2	5.73488351136175	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	52347996	52355326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_52348280_52350259_52350321_52352142_52352233_52354234
transcript_43638.known	chr5	+	2120	4	FSM	ENSMUSG00000097145.6	ENSMUST00000180601.6	2120	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	7.93025150224688	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAGAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	52348020	52355326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_52348280_52350259_52350939_52352142_52352233_52354234
transcript_43641.known	chr5	-	6273	8	FSM	ENSMUSG00000039252.12	ENSMUST00000199942.5	6273	8	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_6	6.36636570147348	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACCGCTTTGATCTCTGGTC	NA	False	NA	NA	False	AATAAA	-18	NA	52723645	52690858	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_52696123_52703794_52703960_52711744_52711915_52713003_52713076_52717504_52717577_52719467_52719540_52721307_52721380_52723259
transcript_43642.known	chr5	-	5252	11	FSM	ENSMUSG00000029173.13	ENSMUST00000031069.13	5252	11	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	10.2493902257647	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAAGTCTTCTTGCACT	NA	False	NA	24	True	AATAAA	-41	NA	52827050	52797428	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_52801450_52804457_52804549_52804939_52805034_52813355_52813448_52813567_52813698_52817971_52818075_52821509_52821664_52822577_52822737_52823329_52823449_52826240_52826396_52826916
transcript_43646.known	chr5	-	5185	11	FSM	ENSMUSG00000029173.13	ENSMUST00000150709.8	5185	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_9	24.1412510032103	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTGAAGTCTTCTTGCACT	NA	False	NA	24	True	AATAAA	-41	NA	52827050	52797428	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_52801450_52804457_52804549_52804939_52805034_52813355_52813448_52813567_52813698_52817971_52818075_52821509_52821664_52822577_52822737_52823329_52823449_52826307_52826396_52826916
transcript_43650.known	chr5	+	2485	13	FSM	ENSMUSG00000029179.15	ENSMUST00000113904.9	2485	13	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_12	14.4327944472148	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTCAGTTGTTATTCC	NA	False	NA	21	True	ATTAAA	-17	NA	52940395	52982007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462_52976608_52980959
transcript_43651.known	chr5	+	5743	12	FSM	ENSMUSG00000029179.15	ENSMUST00000031077.13	5743	12	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_6	13.7197450763007	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTGTGCTCATTCCATA	NA	False	NA	NA	False	ATTAAA	-20	NA	52940395	52980913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_52940557_52941330_52941450_52942439_52942523_52953318_52953595_52953923_52954002_52961720_52961794_52964298_52964450_52965601_52965703_52973142_52973265_52973503_52973580_52975948_52976001_52976462
transcript_43660.known	chr5	+	3854	28	FSM	ENSMUSG00000029176.14	ENSMUST00000031072.14	3854	28	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_6	48.5716418249863	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTAGCGTGTTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	52991353	53025139	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_52991735_52993019_52993126_52996963_52997097_52999057_52999133_52999246_52999274_52999365_52999411_53000162_53000248_53000828_53000934_53002665_53002750_53003973_53004061_53005332_53005398_53005935_53005979_53006096_53006174_53007799_53007901_53007984_53008037_53012925_53012982_53013185_53013233_53014149_53014207_53014512_53014570_53016454_53016549_53018584_53018683_53019290_53019353_53019432_53019472_53019563_53019666_53020928_53021004_53021820_53021995_53023235_53023360_53023736
transcript_43668.known	chr5	+	931	4	FSM	ENSMUSG00000061461.12	ENSMUST00000204465.2	931	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	153.686549689801	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3446	False	NA	13	True	ATTAAA	-14	NA	53424518	53435882	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_53424701_53425364_53425413_53434484_53434542_53435238
transcript_43671.known	chr5	+	922	3	FSM	ENSMUSG00000061461.12	ENSMUST00000147148.5	922	3	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_1	5	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGGTGTGTACTGTT	3407	False	NA	13	True	ATTAAA	-14	NA	53424479	53435882	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_53424701_53434484_53434542_53435238
transcript_43673.known	chr5	+	2076	1	FSM	ENSMUSG00000061461.12	ENSMUST00000204839.2	2076	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	3459	False	NA	NA	False	NA	NA	NA	53424531	53426607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_53424500_53426600
transcript_43674.known	chr5	+	5252	11	FSM	ENSMUSG00000039191.13	ENSMUST00000087360.9	5252	11	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	131.697532247191	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTGTAGATGTCTTCTGT	NA	False	NA	12	True	AATAAA	-18	NA	53713175	53814700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_53713246_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
transcript_43680.known	chr5	+	5459	11	FSM	ENSMUSG00000039191.13	ENSMUST00000037618.13	5459	11	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	139.803576492163	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGATGTCTTCTGTGGGA	NA	False	NA	16	True	AATAAA	-22	NA	53747555	53814704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_53747829_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
transcript_43682.known	chr5	+	5440	11	FSM	ENSMUSG00000039191.13	ENSMUST00000113865.5	5440	11	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_1	104.823470654239	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGATGTCTTCTGTGGGA	NA	False	NA	16	True	AATAAA	-22	NA	53747812	53814704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_53748067_53784724_53784764_53793303_53793400_53799365_53799532_53803211_53803387_53806712_53806851_53807004_53807118_53808681_53808823_53809948_53810105_53810423_53810528_53810646
transcript_43688.nic	chr5	+	295	4	ISM	ENSMUSG00000039191.13	ENSMUST00000087360.9	5252	11	-48	15293	-48	0	5prime_fragment	FALSE	canonical	3	64	junction_1	176.312853253024	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTGGAAGAAAAAAAAAGAGC	NA	False	NA	NA	False	NA	NA	NA	53713127	53799407	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_53713246_53784724_53784764_53793303_53793400_53799365
transcript_43694.known	chr5	+	2273	21	FSM	ENSMUSG00000039178.10	ENSMUST00000037337.10	2273	21	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_3	8.96994983263563	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACAGATATCTCTAATAATC	NA	False	NA	NA	False	ATTAAA	-22	NA	53966968	54061307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_53967201_53986691_53986765_53987796_53987843_53990311_53990388_53992513_53992589_53993937_53994002_53995265_53995313_53995468_53995580_54003542_54003616_54005503_54005543_54007179_54007293_54014189_54014265_54017485_54017549_54029594_54029680_54032228_54032274_54041003_54041037_54044695_54044806_54046657_54046750_54054332_54054449_54058918_54058990_54060673
transcript_437.known	chr1	+	2146	11	FSM	ENSMUSG00000041809.6	ENSMUST00000038447.6	2146	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	4.06939798987516	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGGTGCCTTATTTGGAG	NA	False	NA	12	True	NA	NA	NA	21021911	21061065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_21022021_21025558_21025781_21030353_21030642_21031376_21031527_21037547_21037741_21042998_21043220_21045122_21045264_21048866_21049081_21049633_21049782_21059591_21059827_21060840
transcript_43706.known	chr5	-	3241	7	FSM	ENSMUSG00000047881.15	ENSMUST00000154169.4	3241	7	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_5	64.4360147743481	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCTCAGTCTGCTAATCT	NA	False	NA	NA	False	NA	NA	NA	64126240	64066239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64125988
transcript_43710.known	chr5	-	3093	8	FSM	ENSMUSG00000047881.15	ENSMUST00000087327.13	3093	8	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	231.259726767308	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAGCGACATCTTACAGGA	NA	False	NA	-13	True	AATAAA	-23	NA	64126166	64066407	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_64068495_64082077_64082217_64084331_64084569_64087820_64087879_64093365_64093438_64095148_64095377_64097011_64097106_64125988
transcript_43712.known	chr5	+	2369	14	FSM	ENSMUSG00000029171.13	ENSMUST00000087324.7	2369	14	0	0	0	0	multi-exon	FALSE	canonical	3	609	junction_6	76.13589532023	116	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATAAGGTTTATTTTTTT	NA	False	NA	NA	False	AATAAA	-15	NA	64250292	64285694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_64250432_64254321_64254490_64258289_64258397_64260196_64260282_64260719_64260804_64261056_64261251_64263097_64263288_64263950_64264049_64265011_64265193_64265512_64265607_64267858_64267989_64269350_64269541_64273642_64273777_64285119
transcript_43720.known	chr5	-	2879	4	FSM	ENSMUSG00000105402.5	ENSMUST00000198582.5	2879	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	4.89897948556636	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTGTTTTGTTTGTTTG	NA	False	NA	NA	False	TTTAAA	-18	NA	64768043	64751199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_64753667_64759324_64759493_64767442_64767499_64767855
transcript_43721.nnic	chr5	-	1390	3	NIC	ENSMUSG00000105402.5	novel	2879	4	NA	NA	-50	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	10.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCTGTGAATCATTCACA	NA	False	NA	NA	False	AATAAA	-14	NA	64768093	64752570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_64753667_64767442_64767499_64767855
transcript_43723.nnic	chr5	+	1579	6	NNC	ENSMUSG00000029178.15	novel	298	4	NA	NA	-5470	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	263.203039496127	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATCCAGCCTATTAGTC	NA	False	NA	3	True	AGTAAA	-14	NA	64955260	64986893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_64955374_64974077_64974174_64979216_64979701_64980221_64980373_64984452_64984614_64986319
transcript_43726.nnic	chr5	+	1232	4	NNC	ENSMUSG00000029178.15	novel	4016	3	NA	NA	-5778	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	319.679005670793	30	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGTGCTGTGGATGGC	NA	False	NA	18	True	AATAAA	-18	NA	64954952	64980452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_64955374_64974077_64974174_64979216_64979701_64980221
transcript_43727.nic	chr5	+	1001	4	NIC	ENSMUSG00000029178.15	novel	1562	6	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_1	314.494656375731	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGTGCTGTGGATGGC	8221	False	NA	18	True	AATAAA	-18	NA	64969656	64980452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_64969847_64974077_64974174_64979216_64979701_64980221
transcript_43729.known	chr5	+	3381	26	FSM	ENSMUSG00000037890.14	ENSMUST00000204647.3	3381	26	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_5	5.73606136647787	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTGCATGCCCCCTAT	8571	False	NA	NA	False	NA	NA	NA	65357059	65401929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_65357104_65359902_65359995_65360294_65360361_65363752_65363879_65370157_65370274_65373145_65373262_65377778_65377860_65378961_65379075_65379332_65379507_65380371_65380443_65380853_65381027_65381111_65381227_65382030_65382138_65382633_65382757_65384386_65384537_65385528_65385677_65385798_65386004_65388298_65388459_65388620_65388732_65391439_65391550_65396900_65396959_65398197_65398339_65398414_65398498_65398855_65398940_65400661_65400809_65401462
transcript_43730.nic	chr5	+	663	6	ISM	ENSMUSG00000037890.14	ENSMUST00000204375.3	1924	12	-39	8538	1	-8538	5prime_fragment	FALSE	canonical	3	27	junction_5	6.05309838016862	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTCACTGTGGAATATGC	8555	False	NA	NA	False	TATAAA	-9	NA	65357043	65373348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_65357104_65359902_65359995_65360294_65360361_65363752_65363879_65370157_65370274_65373145
transcript_43731.known	chr5	-	4699	25	FSM	ENSMUSG00000029191.17	ENSMUST00000172732.8	4699	25	0	0	0	0	multi-exon	TRUE	canonical	3	281	junction_12	79.0184138174275	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTACTGAGTCTTGCCCCT	-17	True	NA	-4	True	AATAAA	-19	NA	65492964	65419194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436164_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
transcript_43732.known	chr5	-	3952	25	FSM	ENSMUSG00000029191.17	ENSMUST00000203471.3	3952	25	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	103.759328563213	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACCACCTGGAGCCGAGT	-14	True	NA	NA	False	AATAAA	-16	NA	65492961	65419944	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_65420493_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436167_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
transcript_43740.known	chr5	-	4751	25	FSM	ENSMUSG00000029191.17	ENSMUST00000204965.3	4751	25	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_12	80.615847887097	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTACTGAGTCTTGCCCCT	NA	False	NA	-4	True	AATAAA	-19	NA	65493013	65419194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_65420490_65421585_65421775_65423444_65423659_65426290_65426437_65429483_65429602_65429720_65429876_65431293_65431393_65431717_65431814_65432724_65432863_65433032_65433125_65434699_65434815_65436053_65436167_65436799_65437158_65442191_65442297_65445232_65445413_65448429_65448538_65451000_65451279_65453296_65453388_65454741_65454820_65459275_65459354_65460318_65460552_65468383_65468507_65470300_65470377_65476747_65476874_65492866
transcript_43743.known	chr5	-	485	4	FSM	ENSMUSG00000029191.17	ENSMUST00000203644.2	485	4	0	0	0	0	multi-exon	FALSE	canonical	3	537	junction_1	39.3474550920669	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAATGTCTTGTGTGGTAA	-9	True	NA	NA	False	NA	NA	NA	65492956	65468313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_65468507_65470300_65470377_65476747_65476874_65492866
transcript_43744.nic	chr5	+	2698	4	ISM	ENSMUSG00000029195.11	ENSMUST00000031096.11	3540	5	23561	0	23467	0	3prime_fragment	FALSE	canonical	3	98	junction_2	21.6024689946929	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTTGTCTTAGACTTCG	NA	False	NA	24	True	AAAAAG	-6	NA	65529217	65541350	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_65529804_65533022_65533292_65536270_65537415_65540651
transcript_43746.known	chr5	-	738	8	FSM	ENSMUSG00000047215.15	ENSMUST00000057885.13	738	8	0	0	0	0	multi-exon	FALSE	canonical	3	5084	junction_7	3201.89202994551	2170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGTCCTTGTCTTTT	NA	False	NA	-6	True	AATAAA	-16	NA	65548787	65545706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_65545785_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
transcript_43750.known	chr5	-	680	7	FSM	ENSMUSG00000047215.15	ENSMUST00000120094.5	680	7	0	0	0	0	multi-exon	FALSE	canonical	3	5084	junction_6	3284.20622914511	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCAGAAGATTTTACATG	NA	False	NA	-120	True	ATTAAA	-32	NA	65548723	65545820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288_65548336_65548718
transcript_43755.known	chr5	-	675	7	FSM	ENSMUSG00000047215.15	ENSMUST00000196667.5	675	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	5003.25345539169	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTATATATTGATTTGTG	NA	False	NA	-20	True	AATAAA	-2	NA	65548329	65545720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_65545811_65545904_65546023_65546413_65546495_65546820_65546954_65547730_65547827_65548081_65548198_65548288
transcript_43756.known	chr5	-	456	3	FSM	ENSMUSG00000047215.15	ENSMUST00000147966.2	456	3	0	0	0	0	multi-exon	FALSE	canonical	3	8565	junction_1	3040	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAATTTGGGCTCTTTTGGG	NA	False	NA	-49	True	NA	NA	NA	65546716	65545749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_65545785_65545904_65546023_65546413
transcript_43761.known	chr5	+	1668	11	FSM	ENSMUSG00000029199.12	ENSMUST00000122026.6	1668	11	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_10	33.1264244976726	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGCGTGTGTGTATGTGT	6886	False	NA	48	True	AAAAAG	-11	NA	65548839	65566550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_65549017_65549562_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
transcript_43764.known	chr5	+	2996	11	FSM	ENSMUSG00000029199.12	ENSMUST00000031101.10	2996	11	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	106.686643962588	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCATGGCTGTCCATATCA	6929	False	NA	NA	False	GATAAA	-34	NA	65548882	65568036	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_65549017_65549677_65549733_65551283_65551378_65552707_65552789_65554945_65555103_65555173_65555232_65557189_65557319_65559953_65560100_65561510_65561582_65562672_65562785_65566077
transcript_4377.known	chr10	+	1455	3	FSM	ENSMUSG00000020070.19	ENSMUST00000148259.2	1455	3	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	6.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	62816001	62826072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_62816112_62818449_62818624_62824901
transcript_43770.known	chr5	-	2550	12	FSM	ENSMUSG00000029201.15	ENSMUST00000031103.14	2550	12	0	0	0	0	multi-exon	FALSE	canonical	3	385	junction_10	43.2746370854342	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTCTTCAATTTACGTATG	NA	False	NA	-13	True	AATAAA	-22	NA	65593292	65570563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_65571407_65574167_65574279_65574363_65574456_65574853_65574988_65575820_65575952_65577591_65577687_65579977_65580126_65580503_65580702_65580792_65580994_65581384_65581487_65584758_65584928_65592966
transcript_43775.nic	chr5	-	1142	6	ISM	ENSMUSG00000029201.15	ENSMUST00000031103.14	2550	12	60	9356	60	777	5prime_fragment	FALSE	canonical	3	385	junction_4	43.0655314607866	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAGGTTTGTGGAACCT	NA	False	NA	NA	False	AGTAAA	-15	NA	65593232	65579919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_65580126_65580503_65580702_65580792_65580994_65581384_65581487_65584758_65584928_65592966
transcript_43777.nnic	chr5	-	1163	6	NNC	ENSMUSG00000037822.13	novel	1177	6	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	187.862715832599	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGGTTTAGAATCCATT	NA	False	NA	NA	False	AATAAA	-19	NA	65650251	65607145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65634668_65634723_65650078
transcript_43779.known	chr5	-	4560	5	FSM	ENSMUSG00000037822.13	ENSMUST00000139122.8	4560	5	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_4	15.1410039297267	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCGTTTTCTGTTTGACTT	NA	False	NA	-3	True	AATAAA	-19	NA	65650743	65604186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650078
transcript_4378.known	chr10	-	682	3	FSM	ENSMUSG00000020069.17	ENSMUST00000119814.3	682	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	86.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAGATGAGACTTGGTTTT	5828	False	NA	NA	False	AATAAA	-34	NA	62859626	62853585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62854005_62855171_62855307_62859498
transcript_43780.known	chr5	-	1056	5	FSM	ENSMUSG00000037822.13	ENSMUST00000121661.8	1056	5	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_4	163.329421721869	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTTGGTTTAGAATCCATT	NA	False	NA	NA	False	AATAAA	-19	NA	65650403	65607145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_65607781_65610528_65610672_65617866_65617916_65625735_65625845_65650283
transcript_43782.known	chr5	+	4893	7	FSM	ENSMUSG00000029203.17	ENSMUST00000142407.8	4893	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	503.727025944277	636	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATGTTTTATATCTCATT	NA	False	NA	12	True	AATAAA	-20	NA	65694575	65756331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_65694890_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
transcript_43784.known	chr5	+	1529	7	FSM	ENSMUSG00000029203.17	ENSMUST00000201292.4	1529	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	633.60961079271	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGACATTAATTTTTAAAA	NA	False	NA	26	True	AATAAA	-27	NA	65694618	65753098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_65694802_65723331_65723426_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
transcript_4379.known	chr10	+	847	3	FSM	ENSMUSG00000020072.16	ENSMUST00000130531.2	847	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGAGACAGGATTTCTCTG	4329	False	NA	NA	False	AAGAAA	-40	NA	62889988	62893907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_62890285_62892557_62892621_62893419
transcript_43791.known	chr5	+	4682	6	FSM	ENSMUSG00000029203.17	ENSMUST00000202679.4	4682	6	0	0	0	0	multi-exon	FALSE	canonical	3	526	junction_1	338.408628731597	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGAATTTTCCCCATTAT	NA	False	NA	7	True	AATAAA	-15	NA	65694633	65756272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_65694890_65728874_65728934_65738728_65738812_65749218_65749319_65751762_65751892_65752217
transcript_43794.known	chr5	+	1449	5	FSM	ENSMUSG00000029203.17	ENSMUST00000201984.4	1449	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	582.178398345387	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTGACATTAATTTTTAAAA	NA	False	NA	26	True	AATAAA	-27	NA	65694633	65753098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_65694890_65738728_65738812_65749218_65749319_65751762_65751892_65752217
transcript_43798.nnic	chr5	+	1468	3	NNC	ENSMUSG00000029204.8	novel	5093	4	NA	NA	8031	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTGTGCTGTGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	66028991	66050786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_66029070_66048895_66049015_66049515
transcript_43799.nic	chr5	-	2752	7	ISM	ENSMUSG00000070780.12	ENSMUST00000167950.8	4895	8	98	2198	-38	-153	3prime_fragment	FALSE	canonical	3	18	junction_6	10.0235833025033	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGCACACCCGCGCATC	NA	False	NA	NA	False	NA	NA	NA	66309169	66176097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_66176780_66179970_66180177_66182295_66182503_66183472_66184633_66203429_66203557_66255049_66255132_66308881
transcript_43801.known	chr5	-	6333	16	FSM	ENSMUSG00000029207.17	ENSMUST00000159786.8	6333	16	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_15	15.1314242555022	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGACTCCTTGATCTGA	NA	False	NA	-70	True	AATAAA	-16	NA	66776006	66456182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66520060_66520189_66522316_66522464_66548969_66549031_66549114_66549201_66557418_66557625_66608810_66609627_66619440_66619510_66649400_66649516_66700804_66700961_66775910
transcript_43803.known	chr5	-	1638	7	FSM	ENSMUSG00000029207.17	ENSMUST00000160775.8	1638	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	37.7377647574534	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTTTCTTTTCAGATGGT	NA	False	NA	NA	False	ATTAAA	-24	NA	66495025	66459214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_66460053_66464877_66465058_66466420_66466537_66468342_66468427_66469501_66469590_66470657_66470773_66494808
transcript_43804.known	chr5	+	1177	9	FSM	ENSMUSG00000029223.13	ENSMUST00000031131.11	1177	9	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_4	35.1227757302865	941	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTTTTTATTTTCTCTT	NA	False	NA	33	True	AATAAA	-22	NA	66833433	66844577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_66833666_66833778_66833791_66834286_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
transcript_43806.nic	chr5	+	1521	8	NIC	ENSMUSG00000029223.13	novel	1177	9	NA	NA	-4	0	intron_retention	FALSE	canonical	3	449	junction_3	34.4211610282194	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTGGTTTTTATTTT	NA	False	NA	28	True	AATAAA	-17	NA	66833580	66844572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_66833666_66833778_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
transcript_43807.known	chr5	+	980	7	FSM	ENSMUSG00000029223.13	ENSMUST00000176015.5	980	7	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_2	35.4479273802511	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCAGCTGGTTTTTATTTT	NA	False	NA	28	True	AATAAA	-17	NA	66834234	66844572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_66834416_66837005_66837157_66839784_66839871_66839951_66840000_66841031_66841099_66842115_66842175_66844184
transcript_43809.known	chr5	+	5322	9	FSM	ENSMUSG00000037720.17	ENSMUST00000160352.8	5322	9	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_8	122.604483502847	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGTTTAGAAATGCTATG	NA	False	NA	NA	False	AATAAA	-18	NA	67418039	67448804	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438_67443560_67444352
transcript_4381.known	chr10	-	538	3	FSM	ENSMUSG00000087030.2	ENSMUST00000155982.2	538	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCCTGTCTTTGATGT	NA	False	NA	NA	False	AATAAA	-17	NA	62893246	62891381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62891640_62892426_62892599_62893138
transcript_43815.known	chr5	+	6247	8	FSM	ENSMUSG00000037720.17	ENSMUST00000037918.12	6247	8	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_1	43.3504937240909	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAGGTTTAGAAATGCTATG	NA	False	NA	NA	False	AATAAA	-18	NA	67417907	67448804	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_67418150_67418306_67418377_67421072_67421168_67421612_67421801_67424644_67424713_67425853_67425988_67441482_67441567_67443438
transcript_43821.known	chr5	-	1011	7	FSM	ENSMUSG00000029209.16	ENSMUST00000173927.8	1011	7	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_3	36.2142544065486	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACAAAAACAAAAAAAA	NA	False	NA	NA	False	GATAAA	-37	NA	69749617	69733154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_69733297_69735320_69735496_69736850_69737030_69742316_69742500_69743807_69743910_69747003_69747167_69749550
transcript_43824.known	chr5	-	542	3	FSM	ENSMUSG00000049387.11	ENSMUST00000050129.6	542	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	6	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACTAATAAGTTGTTGAAAAC	NA	False	NA	NA	False	AATAAA	-15	NA	71705548	71600166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_71600613_71660793_71660857_71705515
transcript_43828.known	chr5	-	3360	6	FSM	ENSMUSG00000029213.12	ENSMUST00000199767.5	3360	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	163.112966989139	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACTCCGTTCCATACTCCA	NA	False	NA	NA	False	NA	NA	NA	72325507	72314527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_72317237_72318250_72318407_72320064_72320218_72322097_72322198_72322693_72322850_72325421
transcript_4383.known	chr10	-	1833	4	FSM	ENSMUSG00000020067.9	ENSMUST00000218978.2	1833	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	3.29983164553722	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAACAAAAAACAAAACG	NA	False	NA	NA	False	TTTAAA	-2	NA	62958463	62952055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_62952806_62954199_62954334_62955807_62955974_62957680
transcript_43832.nnic	chr5	-	1566	5	NNC	ENSMUSG00000029213.12	novel	3895	5	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_4	141.390416931276	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTGTTGCTTGATTTC	NA	False	NA	-4	True	AATACA	-14	NA	72325523	72316353	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325305
transcript_43833.known	chr5	-	3895	5	FSM	ENSMUSG00000029213.12	ENSMUST00000013693.11	3895	5	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_3	25.4889682019496	406	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATAGACTCATGGGTATT	NA	False	NA	-4	True	NA	NA	NA	72325532	72313917	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_72317237_72318250_72318407_72320064_72320218_72322693_72322850_72325421
transcript_43836.known	chr5	+	4206	6	FSM	ENSMUSG00000067219.10	ENSMUST00000087212.8	4206	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTATTCTGTTTTGA	2039	False	NA	NA	False	NA	NA	NA	72805137	72828421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_72805277_72816024_72816292_72818098_72818156_72820876_72820968_72824118_72824280_72824930
transcript_43837.known	chr5	-	2659	19	FSM	ENSMUSG00000029217.17	ENSMUST00000071944.13	2659	19	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	3.16471674858358	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTTTGTTGTTTTTGTT	NA	False	NA	NA	False	NA	NA	NA	73025787	72913058	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_72913723_72914705_72914864_72914946_72915066_72917685_72917751_72920906_72921124_72921466_72921639_72922854_72922930_72926047_72926182_72928489_72928570_72931173_72931229_72936763_72936830_72939345_72939519_72941060_72941102_72943259_72943389_72944080_72944163_72946482_72946588_72980798_72980985_72982386_72982474_73025736
transcript_43838.known	chr5	-	2580	18	FSM	ENSMUSG00000029217.17	ENSMUST00000113594.8	2580	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	3.66315234751536	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGCTGAAATTTTTGTTGT	NA	False	NA	NA	False	NA	NA	NA	73025802	72913065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_72913723_72914705_72914864_72914946_72915066_72917685_72917751_72920906_72921124_72921466_72921639_72922854_72922930_72926047_72926182_72928489_72928570_72931173_72931229_72936763_72936830_72939345_72939519_72941060_72941102_72943259_72943389_72944080_72944163_72946482_72946588_72980798_72980985_73025736
transcript_4384.known	chr10	+	3914	26	FSM	ENSMUSG00000020064.10	ENSMUST00000219577.2	3914	26	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_16	90.360929610092	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAGTAGTTTCTATGGTTG	NA	False	NA	17	True	AATAAA	-31	NA	63079701	63153657	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63139623_63139648_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
transcript_43845.nic	chr5	+	1456	10	NIC	ENSMUSG00000029152.14	novel	1523	9	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	159	junction_1	326.119874953224	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	15	True	AATAAA	-16	NA	73450118	73471284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
transcript_43857.known	chr5	+	1523	9	FSM	ENSMUSG00000029152.14	ENSMUST00000031038.11	1523	9	0	0	0	0	multi-exon	FALSE	canonical	3	746	junction_1	106.002063659157	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTGTCTTTTTTTTAAAG	NA	False	NA	14	True	AATACA	-7	NA	73450134	73471412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73467616_73467770_73470785
transcript_43864.known	chr5	+	1139	8	FSM	ENSMUSG00000029152.14	ENSMUST00000200935.4	1139	8	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_7	334.9632937551	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTGTCATTCACATTTT	NA	False	NA	15	True	AATAAA	-16	NA	73450237	73471284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464097_73470785
transcript_43866.known	chr5	+	1311	8	FSM	ENSMUSG00000029152.14	ENSMUST00000071081.13	1311	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	338.614704889417	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATGGCTTTGTTTGAA	NA	False	NA	31	True	AATAAA	-32	NA	73450126	73471300	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920_73464142_73470785
transcript_43868.known	chr5	+	800	8	FSM	ENSMUSG00000029152.14	ENSMUST00000202250.4	800	8	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	366.22843323003	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTTTATGGTCCAACGT	NA	False	NA	NA	False	AATGAA	-5	NA	73450149	73464123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_73450320_73451308_73451354_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920
transcript_4387.known	chr10	+	3898	25	FSM	ENSMUSG00000020064.10	ENSMUST00000020258.10	3898	25	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_7	41.1321548993809	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATACCAGTAGTTTCTATG	NA	False	NA	13	True	AATAAA	-27	NA	63079689	63153653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959_63119121_63121430_63121508_63121795_63121921_63123297_63123358_63123676_63123789_63124830_63125021_63126282_63126456_63134898_63135019_63142126_63142226_63143520_63143689_63144085_63144230_63147245_63147413_63147626_63147694_63150265_63150349_63151438_63151623_63152478_63152582_63153058
transcript_43871.known	chr5	+	3354	7	FSM	ENSMUSG00000029152.14	ENSMUST00000166823.5	3354	7	0	0	0	0	multi-exon	FALSE	canonical	3	746	junction_1	115.10683443364	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCGTTGCTTGAAAGATT	NA	False	NA	16	True	AATAAA	-27	NA	73450135	73466708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_73450320_73451627_73451691_73452268_73452350_73458006_73458061_73460934_73460983_73461891_73462028_73463920
transcript_43876.known	chr5	-	2554	7	FSM	ENSMUSG00000029153.12	ENSMUST00000087195.9	2554	7	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_6	41.8107508768844	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGCTGGCTTTTTCTTCTT	NA	False	NA	-1	True	AATAAA	-35	NA	73496335	73479541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_73481191_73483623_73483742_73485005_73485054_73486609_73486664_73489446_73489544_73493162_73493289_73495873
transcript_43880.known	chr5	+	4116	11	FSM	ENSMUSG00000051674.16	ENSMUST00000063882.12	4116	11	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	17.7721692542019	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTGTGGGGTCTTTGT	NA	False	NA	15	True	AATAAA	-26	NA	73648375	73718133	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_73648535_73668228_73668300_73668469_73668510_73677458_73677574_73679995_73680088_73688846_73688918_73691948_73692041_73701389_73701499_73712701_73712807_73714596_73714700_73714974
transcript_43886.known	chr5	+	4023	10	FSM	ENSMUSG00000051674.16	ENSMUST00000113558.8	4023	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_8	47.4083911934961	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGGGGTCTTTGTACTC	NA	False	NA	19	True	AATAAA	-30	NA	73648367	73718137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_73648535_73668228_73668300_73668469_73668510_73677458_73677574_73679995_73680088_73688846_73688918_73691948_73692041_73701389_73701499_73714596_73714700_73714974
transcript_43887.known	chr5	-	3786	6	FSM	ENSMUSG00000029156.12	ENSMUST00000081170.9	3786	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	18.2756668824971	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCAGTTTCTTCGTGACTT	NA	False	NA	NA	False	AATAAA	-17	NA	73805133	73790091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_73793042_73796725_73796858_73797131_73797324_73798025_73798212_73801614_73801825_73805017
transcript_43891.known	chr5	+	848	2	FSM	ENSMUSG00000106968.2	ENSMUST00000202711.2	848	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGAGTCCCCC	NA	False	NA	NA	False	AATAAA	-4	NA	74103723	74105719	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_74103968_74105115
transcript_43894.nic	chr5	-	3170	9	NIC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	-5	-1312	combination_of_known_junctions	FALSE	canonical	3	126	junction_8	53.0377224247045	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTTGCAGCTAATTTATTA	NA	False	NA	-1	True	ATTAAA	-17	NA	74226414	74160698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74226307
transcript_43895.known	chr5	-	4557	9	FSM	ENSMUSG00000054814.15	ENSMUST00000068058.14	4557	9	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_8	42.7755771439732	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTTTGGCTCCTATTT	NA	False	NA	NA	False	ATTAAA	-26	NA	74229092	74159386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74228910
transcript_43896.nic	chr5	-	2500	9	NIC	ENSMUSG00000054814.15	novel	4557	9	NA	NA	-5	1091	combination_of_known_junctions	FALSE	canonical	3	126	junction_8	53.0377224247045	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTCTTGGTTTTCCTACA	NA	False	NA	-19	True	ATTAAA	-29	NA	74226414	74161368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_74162799_74163345_74163425_74163815_74164014_74166484_74166569_74177320_74177398_74189801_74190032_74192964_74193179_74197693_74197775_74226307
transcript_43899.known	chr5	-	452	4	FSM	ENSMUSG00000054814.15	ENSMUST00000145016.3	452	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_3	64.8194072447099	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACACTATTGCGGACATCC	NA	False	NA	NA	False	NA	NA	NA	74226409	74189976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_74190032_74192964_74193179_74197693_74197775_74226307
transcript_43901.known	chr5	+	575	3	FSM	ENSMUSG00000106943.3	ENSMUST00000120364.2	575	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	23.5	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTTCACTTGTTCTT	NA	False	NA	19	True	AATAAA	-21	NA	74253737	74254998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_74253801_74254018_74254081_74254548
transcript_43902.known	chr5	+	1036	2	FSM	ENSMUSG00000106943.3	ENSMUST00000117249.2	1036	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTTGTTCACTTGTTCT	NA	False	NA	18	True	AATAAA	-20	NA	74253743	74254997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_74253801_74254018
transcript_43904.known	chr5	+	121	1	FSM	ENSMUSG00000093355.3	ENSMUST00000175614.3	121	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACCAAAAGCTTCATTTAA	NA	False	NA	NA	False	NA	NA	NA	74254190	74254311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_74254200_74254300
transcript_43905.known	chr5	+	1812	4	FSM	ENSMUSG00000049907.9	ENSMUST00000051937.9	1812	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.4142135623731	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGACTGGGTCTTTATT	NA	False	NA	21	True	AATAAA	-23	NA	74355946	74360142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_74356252_74356763_74356821_74357927_74358005_74358769
transcript_43907.nnic	chr5	-	1464	9	NNC	ENSMUSG00000062110.15	novel	3672	9	NA	NA	8955	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_8	20.0058585169445	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTCAAGCTGTCGCTAGC	NA	False	NA	-3	True	AATAAA	-25	NA	74683435	74366749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_74367057_74372911_74373032_74385975_74386111_74397099_74397246_74558314_74558565_74623220_74623397_74642810_74642939_74680144_74680314_74683402
transcript_43908.known	chr5	-	3672	9	FSM	ENSMUSG00000062110.15	ENSMUST00000072857.13	3672	9	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	6.19979838381862	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGCCATGTGACTCAGAAC	NA	False	NA	NA	False	AATAAA	-15	NA	74692410	74365476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_74367057_74372911_74373032_74385975_74386111_74397099_74397246_74558314_74558565_74623220_74623397_74642810_74642939_74680144_74680314_74691442
transcript_43909.known	chr5	-	2564	11	FSM	ENSMUSG00000029228.16	ENSMUST00000117388.8	2564	11	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	3.95474398665704	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGTGTAGAGGATTTCTT	NA	False	NA	1	True	AATAAA	-19	NA	74863573	74757764	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_74758072_74758436_74758596_74766697_74766924_74768397_74768567_74771337_74771473_74780634_74781007_74784142_74784346_74788008_74788162_74788780_74789023_74846056_74846534_74863452
transcript_4391.nic	chr10	+	1899	9	ISM	ENSMUSG00000020064.10	ENSMUST00000020258.10	3898	25	-132	34197	-31	-5540	5prime_fragment	FALSE	canonical	3	265	junction_7	22.4318412084251	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAGAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	63079557	63119456	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229_63109452_63110775_63110868_63114113_63114245_63118959
transcript_43911.nic	chr5	+	2200	19	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_9	215.964760499897	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAAAGCTTTGTCTTGT	NA	False	NA	22	True	AATAAA	-23	NA	74696114	74756806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
transcript_43915.nic	chr5	+	2149	18	NIC	ENSMUSG00000029227.16	novel	4769	18	NA	NA	-52	0	combination_of_known_junctions	TRUE	canonical	3	110	junction_9	206.218767164378	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAAAGCTTTGTCTTGT	NA	False	NA	22	True	AATAAA	-23	NA	74696057	74756806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74707767_74707837_74717700_74717811_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
transcript_43918.known	chr5	+	4769	18	FSM	ENSMUSG00000029227.16	ENSMUST00000113536.8	4769	18	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_9	161.909389842069	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTCATTACCCTGACTGC	NA	False	NA	23	True	AATAAA	-32	NA	74696131	74759461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74725179_74725288_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
transcript_43923.known	chr5	+	4673	17	FSM	ENSMUSG00000029227.16	ENSMUST00000080164.12	4673	17	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_9	134.520909155417	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCAATGAAGTTTGGTCATTA	NA	False	NA	13	True	AATAAA	-22	NA	74696109	74759451	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74745706_74745734_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
transcript_43925.known	chr5	+	1969	16	FSM	ENSMUSG00000029227.16	ENSMUST00000113535.9	1969	16	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_11	150.805393360671	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTAAAAAGCTTTGTCTTGT	NA	False	NA	22	True	AATAAA	-23	NA	74696141	74756806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_74696423_74697461_74697507_74697602_74697643_74701592_74701651_74702669_74702774_74706072_74706138_74706713_74706822_74707355_74707487_74717700_74717811_74731759_74731854_74733089_74733247_74747663_74747719_74748805_74748862_74752434_74752655_74755734_74755873_74756499
transcript_43928.known	chr5	-	9699	6	FSM	ENSMUSG00000029229.9	ENSMUST00000075452.7	9699	6	0	0	0	0	multi-exon	FALSE	canonical	3	625	junction_4	34.4290574950869	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTAGTTTGGGGTTTTT	NA	False	NA	NA	False	AATAAA	-5	NA	75205435	75158648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_75167425_75171891_75171952_75172113_75172171_75187728_75187885_75188021_75188077_75204840
transcript_43929.known	chr5	+	5241	21	FSM	ENSMUSG00000005672.13	ENSMUST00000144270.8	5241	21	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_9	132.566766197264	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATTTTTCTGTTTGTTTT	727	False	NA	14	True	NA	NA	NA	75735575	75817382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_75735779_75767685_75767959_75769929_75770212_75771466_75771604_75775978_75776154_75781506_75781697_75783648_75783765_75797953_75798069_75799624_75799807_75801152_75801260_75801358_75801486_75801769_75801875_75801986_75802098_75806495_75806647_75808407_75808497_75809046_75809175_75810206_75810330_75813209_75813322_75813416_75813517_75813879_75813986_75815073
transcript_43933.known	chr5	+	1747	6	FSM	ENSMUSG00000029233.16	ENSMUST00000031143.13	1747	6	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_4	4.14728827066554	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCCCTGGACTGGGTAACAT	NA	False	NA	15	True	AATAAA	-27	NA	76288117	76303326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_76288396_76295532_76295676_76297049_76297086_76297599_76297798_76301370_76301506_76302369
transcript_43937.known	chr5	-	2287	3	FSM	ENSMUSG00000029238.12	ENSMUST00000201052.2	2287	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	14	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAATAAAAAGAAATAAGCT	NA	False	NA	NA	False	AGTAAA	-27	NA	76452619	76419800	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_76421891_76451270_76451350_76452501
transcript_43939.nnic	chr5	-	1050	6	NNC	ENSMUSG00000029235.15	novel	1181	6	NA	NA	2	-2	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	43.3774134775231	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGTGTGTATAGGTGT	NA	False	NA	NA	False	AATAAA	-41	NA	76479001	76459963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_76460446_76465377_76465448_76466973_76467118_76472152_76472244_76472839_76472961_76478859
transcript_4394.known	chr10	+	1775	6	FSM	ENSMUSG00000020064.10	ENSMUST00000219177.2	1775	6	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	20.4685124032012	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTTGAAACAAGTCACAAT	NA	False	NA	NA	False	AATAAA	-20	NA	63079722	63110212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_63079943_63081196_63081228_63081600_63081905_63099804_63099965_63105406_63105484_63109229
transcript_43940.known	chr5	-	1181	6	FSM	ENSMUSG00000029235.15	ENSMUST00000031145.7	1181	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	18.0554700852678	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGTGCACCATGTGT	NA	False	NA	NA	False	AATAAA	-31	NA	76479003	76459973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_76460446_76465647_76465857_76466973_76467118_76472152_76472244_76472839_76472961_76478859
transcript_43945.known	chr5	-	828	10	FSM	ENSMUSG00000029236.5	ENSMUST00000031146.3	828	10	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_2	1.03040205505508	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTACAATGGTCGATTGC	NA	False	NA	NA	False	AATAAA	-19	NA	76511635	76481341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_76481525_76483669_76483710_76485284_76485339_76488608_76488678_76491768_76491820_76491910_76491941_76493285_76493346_76497958_76498007_76506197_76506257_76511401
transcript_43946.known	chr5	+	3371	20	FSM	ENSMUSG00000036435.14	ENSMUST00000113493.8	3371	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	61.1786811310178	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATATTTGATAATATTCTTA	NA	False	NA	8	True	AATAAA	-18	NA	76677169	76718132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76688593_76688615_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76705665_76705711_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
transcript_43947.known	chr5	+	3371	19	FSM	ENSMUSG00000036435.14	ENSMUST00000087133.11	3371	19	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_10	33.5248203611431	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATATTCTTAAGCCTTATA	NA	False	NA	17	True	AATAAA	-27	NA	76677157	76718141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76705665_76705711_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
transcript_43949.known	chr5	+	3272	18	FSM	ENSMUSG00000036435.14	ENSMUST00000049469.13	3272	18	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_10	35.7889816992977	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTGATAATATTCTTAAG	NA	False	NA	10	True	AATAAA	-20	NA	76677204	76718134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_76677310_76680601_76680736_76683400_76683532_76685544_76685705_76689897_76690086_76691301_76691530_76691724_76691858_76693100_76693211_76697298_76697449_76701946_76702053_76706850_76707015_76707564_76707673_76708176_76708254_76709138_76709368_76711076_76711261_76714803_76715004_76715813_76716009_76717464
transcript_4395.known	chr10	-	3905	9	FSM	ENSMUSG00000020063.17	ENSMUST00000020257.13	3905	9	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_8	29.4870204496826	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTTCCATTGTTCATAGCA	NA	False	NA	0	True	ATTAAA	-26	NA	63174811	63154785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_63156744_63157527_63158080_63159745_63159933_63160904_63160985_63161817_63161966_63167523_63167677_63171414_63171657_63172758_63172876_63174343
transcript_43956.nic	chr5	-	3821	16	NIC	ENSMUSG00000055923.17	novel	3694	16	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_15	19.0349386363311	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGAATTTGTCTGTGGTCCT	NA	False	NA	-3	True	ATTAAA	-16	NA	77053341	77023786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113_77030910_77031932_77032049_77033976_77034170_77035034_77035208_77035876_77035984_77036439_77036682_77039449_77039643_77044223_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053117
transcript_43957.known	chr5	-	3694	16	FSM	ENSMUSG00000055923.17	ENSMUST00000120963.8	3694	16	0	0	0	0	multi-exon	TRUE	canonical	3	29	junction_15	18.6828501275605	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTGGTCCTTTCCA	NA	False	NA	2	True	ATTAAA	-21	NA	77053361	77023781	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_77024270_77025373_77025506_77026250_77026374_77027756_77027921_77030113_77030910_77031932_77032049_77033976_77034170_77035034_77035208_77035876_77035984_77036439_77036682_77039449_77039643_77044223_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053269
transcript_43959.nic	chr5	-	1282	6	ISM	ENSMUSG00000055923.17	ENSMUST00000146570.8	2264	13	-17	13289	-1	136	5prime_fragment	FALSE	canonical	3	18	junction_5	32.6521055982612	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGCTGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	77053351	77043952	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77052805_77052860_77053269
transcript_43961.nic	chr5	-	1146	6	ISM	ENSMUSG00000055923.17	ENSMUST00000146570.8	2264	13	-17	13425	-1	0	5prime_fragment	FALSE	canonical	3	18	junction_5	32.6521055982612	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAATCTTATATTT	NA	False	NA	NA	False	AAAACA	-5	NA	77053351	77044088	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77052805_77052860_77053269
transcript_43962.nic	chr5	-	1370	5	NIC	ENSMUSG00000055923.17	novel	1080	5	NA	NA	-2	136	combination_of_known_junctions	FALSE	canonical	3	27	junction_4	26.7301328092473	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGCTGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	77053341	77043952	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053117
transcript_43963.known	chr5	-	1080	5	FSM	ENSMUSG00000055923.17	ENSMUST00000154548.8	1080	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	25.8891869319992	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAATCTTATATTT	NA	False	NA	NA	False	AAAACA	-5	NA	77053339	77044088	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053269
transcript_43964.nic	chr5	-	1234	5	NIC	ENSMUSG00000055923.17	novel	1080	5	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_4	26.7301328092473	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAAAAATCTTATATTT	NA	False	NA	NA	False	AAAACA	-5	NA	77053341	77044088	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_77044538_77049007_77049129_77049764_77050033_77052055_77052228_77053117
transcript_43969.known	chr5	-	3981	11	FSM	ENSMUSG00000029246.15	ENSMUST00000140076.2	3981	11	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_6	47.121226639382	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTATGTGTGCATTTTAA	NA	False	NA	49	True	AATAAA	-3	NA	77099425	77061122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_77063253_77063791_77063913_77065880_77066103_77067217_77067346_77067602_77067755_77069316_77069390_77070057_77070204_77070301_77070415_77073520_77073728_77074637_77074705_77098803
transcript_4397.known	chr10	+	3025	5	FSM	ENSMUSG00000036764.13	ENSMUST00000043317.7	3025	5	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_2	1.58113883008419	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACCAAGAAGCATCTGAC	NA	False	NA	NA	False	NA	NA	NA	63222341	63246355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_63222555_63231563_63231643_63233017_63233158_63242780_63242986_63243967
transcript_43973.known	chr5	+	1862	10	FSM	ENSMUSG00000029247.18	ENSMUST00000117536.8	1862	10	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_1	1007.72571224074	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGGGGATCTGACCCCAT	347	False	NA	9	True	NA	NA	NA	77099214	77115160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_77099249_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
transcript_43974.known	chr5	+	2345	10	FSM	ENSMUSG00000029247.18	ENSMUST00000120912.8	2345	10	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	1026.8195172413	1101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGCTGTGTGGTCTATA	327	False	NA	19	True	ATTAAA	-22	NA	77099194	77115356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_77099516_77099615_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
transcript_4398.known	chr10	-	388	2	FSM	ENSMUSG00000097134.3	ENSMUST00000219021.2	388	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACACCAACCTCTAACTTTA	NA	False	NA	NA	False	AATAAA	-17	NA	66753518	66751414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_66751739_66753454
transcript_43982.known	chr5	+	2482	9	FSM	ENSMUSG00000029247.18	ENSMUST00000031160.16	2482	9	0	0	0	0	multi-exon	FALSE	canonical	3	3017	junction_4	215.03720608304	1778	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTCTCGCTGTGTGGTC	286	False	NA	15	True	ATTAAA	-18	NA	77099153	77115352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_77099683_77104392_77104591_77107161_77107341_77108956_77109137_77109239_77109354_77110273_77110358_77112288_77112470_77114093_77114253_77114494
transcript_43987.known	chr5	+	3625	19	FSM	ENSMUSG00000036323.15	ENSMUST00000101087.10	3625	19	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_6	28.4995126663987	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCGGTATTGGCATTTT	NA	False	NA	28	True	AATAAA	-36	NA	77122529	77147784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_77122680_77124244_77124366_77126429_77126554_77128134_77128279_77128361_77128474_77130081_77130114_77131964_77132090_77132180_77132239_77135713_77135846_77137147_77137277_77138119_77138193_77139836_77139902_77141988_77142085_77142474_77142579_77142682_77142761_77143624_77143763_77144498_77144537_77145269_77145430_77146038
transcript_4399.known	chr10	-	5430	8	FSM	ENSMUSG00000019873.9	ENSMUST00000020023.9	5430	8	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_7	23.5068379109447	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGTATTTTTTTTTCTT	NA	False	NA	1	True	AATAAA	-24	NA	66932724	66844967	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_66849566_66850680_66850827_66857527_66857673_66870377_66870492_66871663_66871785_66875279_66875357_66898777_66898851_66932568
transcript_43994.known	chr5	-	1113	3	FSM	ENSMUSG00000059325.15	ENSMUST00000113453.9	1113	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	1.5	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGGAGTCTTTTTTTTT	3143	False	NA	-3	True	ATTAAA	-20	NA	77243124	77234834	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_77235664_77242712_77242870_77242997
transcript_43995.known	chr5	-	631	4	FSM	ENSMUSG00000053030.12	ENSMUST00000065216.11	631	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	1.63299316185545	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCCTCGTCTTTTCTGTTG	NA	False	NA	NA	False	AATAAA	-17	NA	77359318	77352953	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_77353273_77354775_77354886_77357579_77357642_77359178
transcript_43998.known	chr5	+	7004	4	FSM	ENSMUSG00000029249.16	ENSMUST00000080359.12	7004	4	0	0	0	0	multi-exon	FALSE	canonical	3	740	junction_1	62.4731053245226	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGACCTTTGTTTATTATT	3696	False	NA	14	True	AATAAA	-14	NA	77413337	77434279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_77413636_77415778_77416671_77423080_77423165_77428549
transcript_44.known	ERCC-00130	+	1051	1	FSM	ERCC-00130A	EF011072	1051	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4535	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00130_+_0_1100
transcript_440.known	chr1	-	6492	11	FSM	ENSMUSG00000041779.6	ENSMUST00000037998.6	6492	11	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	7.25534285888682	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCTCTGATAGGCTTCAC	NA	False	NA	-5	True	AATAAA	-24	NA	21149453	21066522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_21071860_21073193_21073358_21074061_21074206_21074449_21074555_21075790_21075862_21076373_21076459_21077076_21077136_21083016_21083134_21083625_21083736_21107620_21107685_21149217
transcript_44000.known	chr5	+	6924	4	FSM	ENSMUSG00000029249.16	ENSMUST00000113449.2	6924	4	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	347.74543690592	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGACCTTTGTTTATTATT	4401	False	NA	14	True	AATAAA	-14	NA	77414042	77434279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_77414261_77415778_77416671_77423080_77423165_77428549
transcript_44002.known	chr5	-	2288	7	FSM	ENSMUSG00000036285.11	ENSMUST00000047860.9	2288	7	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_4	16.2138486760204	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTGTCCATGTATCTGTGA	NA	False	NA	69	True	AATAAA	-14	NA	77457931	77442028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_77442404_77444932_77445051_77447504_77447622_77452032_77452165_77454120_77454324_77455399_77455565_77456753
transcript_44006.known	chr5	+	4145	25	FSM	ENSMUSG00000029250.6	ENSMUST00000031167.6	4145	25	0	0	0	0	multi-exon	TRUE	canonical	3	372	junction_9	39.992360381564	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGTGTTATCTTTGATT	NA	False	NA	16	True	AATAAA	-16	NA	77457993	77497171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_77458478_77460997_77461071_77463696_77463848_77467810_77467924_77468057_77468278_77468801_77468961_77471400_77471566_77473585_77473783_77473894_77474015_77474381_77474569_77478979_77479124_77479796_77479937_77480033_77480146_77482263_77482419_77483480_77483680_77484273_77484443_77487167_77487265_77488221_77488317_77490376_77490628_77490707_77490798_77491016_77491125_77492638_77492753_77493097_77493259_77496069_77496266_77496926
transcript_44009.known	chr5	-	1116	5	FSM	ENSMUSG00000036256.14	ENSMUST00000046746.10	1116	5	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_4	2.29128784747792	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTTTTTAATGACAATCA	NA	False	NA	NA	False	AATAAA	-21	NA	77555888	77497086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_77497347_77499074_77499202_77499759_77499877_77503408_77503519_77555386
transcript_4401.known	chr10	-	1813	4	FSM	ENSMUSG00000075000.12	ENSMUST00000077839.13	1813	4	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_3	30.2691628926573	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGTTGAGTATGACTTG	NA	False	NA	NA	False	AATAAA	-21	NA	67121084	67102467	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_67103946_67105884_67105926_67111348_67111434_67120875
transcript_44010.known	chr5	-	3192	19	FSM	ENSMUSG00000029253.13	ENSMUST00000031170.10	3192	19	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_10	17.8879399334224	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCATCTTGTCTGTGGTG	NA	False	NA	-6	True	ATTAAA	-17	NA	86213442	86159882	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_86160187_86161278_86161370_86164060_86164216_86166247_86166344_86168687_86168811_86170237_86170343_86176992_86177050_86180247_86180331_86181423_86181571_86182089_86182370_86183274_86183449_86185170_86185773_86193150_86193361_86194237_86194440_86195442_86195543_86200029_86200101_86206013_86206106_86209862_86209907_86213186
transcript_44013.known	chr5	-	6590	33	FSM	ENSMUSG00000035898.14	ENSMUST00000039373.14	6590	33	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_13	11.1589632554956	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTCTTGAGTTGCAACT	7088	False	NA	-4	True	NA	NA	NA	86320662	86257145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_86260648_86265882_86265978_86267191_86267280_86268386_86268515_86270163_86270358_86272169_86272288_86274327_86274400_86275558_86275629_86276534_86276599_86276686_86276739_86279071_86279201_86280300_86280382_86280476_86280567_86282832_86282939_86284167_86284350_86285675_86285754_86288214_86288296_86289406_86289486_86290263_86290332_86292193_86292338_86294933_86295001_86295663_86295741_86296727_86296791_86297868_86297973_86300425_86300550_86300684_86300808_86302212_86302294_86307062_86307175_86308137_86308233_86311937_86311967_86312555_86312651_86318413_86318477_86320526
transcript_44018.known	chr5	+	1629	1	FSM	ENSMUSG00000070697.5	ENSMUST00000090413.6	1629	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	443	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTTTGTAATACCTATT	NA	False	NA	20	True	AATAAA	-22	NA	88702320	88703949	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_88702300_88703900
transcript_44019.known	chr5	-	2286	10	FSM	ENSMUSG00000044221.15	ENSMUST00000113234.8	2286	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	165.873073593064	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATCAAAGTTCTGTATA	NA	False	NA	-8	True	AATAAA	-26	NA	88823525	88807316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_88808319_88810393_88810470_88810978_88811115_88811922_88812045_88813615_88813801_88818034_88818171_88819020_88819165_88820463_88820620_88821551_88821709_88823353
transcript_4402.known	chr10	+	2246	12	FSM	ENSMUSG00000037846.19	ENSMUST00000117086.2	2246	12	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_10	13.4870614459296	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAATTGTAATACTTAATAG	NA	False	NA	NA	False	AATACA	-19	NA	67815544	67878128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_67815643_67823136_67823334_67833394_67833454_67837753_67837808_67839033_67839152_67841329_67841525_67853635_67853731_67861342_67861450_67862347_67862480_67871618_67871782_67875860_67875969_67877208
transcript_44020.nic	chr5	-	2248	10	NIC	ENSMUSG00000044221.15	novel	2286	10	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_9	167.407759750531	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAATCAAAGTTCTGTATA	NA	False	NA	-8	True	AATAAA	-26	NA	88823538	88807316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_88808319_88810393_88810470_88810978_88811115_88811922_88812045_88813615_88813801_88818034_88818171_88819020_88819165_88820463_88820620_88821551_88821709_88823404
transcript_44021.known	chr5	+	2705	6	FSM	ENSMUSG00000006262.16	ENSMUST00000006424.8	2705	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	7.75628777186613	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAGGTAGGCAATCCTG	NA	False	NA	NA	False	AATAAA	-17	NA	88868729	88905848	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_88868981_88891162_88891330_88892915_88893010_88897383_88897518_88901018_88901183_88903953
transcript_44024.known	chr5	+	3078	7	FSM	ENSMUSG00000029366.11	ENSMUST00000031311.10	3078	7	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_6	17.3052657368277	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGAGACTTTAAAATTTTC	NA	False	NA	27	True	AATAAA	-24	NA	88912854	88931140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_88913206_88917462_88917579_88920488_88920683_88921940_88922089_88924715_88924832_88926220_88926312_88929078
transcript_44028.known	chr5	-	1333	6	FSM	ENSMUSG00000035505.15	ENSMUST00000048363.10	1333	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_3	53.4714877294432	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGTGAGATAATTTC	NA	False	NA	-4	True	AATAAA	-16	NA	90371860	90362582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_90363035_90365375_90365484_90366770_90366893_90367218_90367383_90370089_90370191_90371474
transcript_44029.known	chr5	-	1307	6	FSM	ENSMUSG00000035505.15	ENSMUST00000118816.6	1307	6	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_3	54.1833922895199	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTCTGGTGAGATAATTTC	NA	False	NA	-4	True	AATAAA	-16	NA	90371831	90362582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_90363035_90365375_90365484_90366770_90366896_90367218_90367383_90370089_90370191_90371474
transcript_44032.known	chr5	-	695	4	FSM	ENSMUSG00000035505.15	ENSMUST00000148480.2	695	4	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	102.732662770903	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCAACCTACTGATAGTG	NA	False	NA	NA	False	NA	NA	NA	90371798	90366793	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_90366896_90367218_90367383_90370089_90370195_90371474
transcript_44033.known	chr5	-	8057	33	FSM	ENSMUSG00000055204.16	ENSMUST00000081914.13	8057	33	0	0	0	0	multi-exon	TRUE	canonical	1	45	junction_32	30.9701847548574	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTTCCCATAGTGGCTG	NA	False	NA	NA	False	NA	NA	NA	90514087	90376323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_90377201_90378664_90378830_90380099_90380279_90381759_90382009_90386797_90387011_90390722_90392354_90398233_90398384_90400725_90400882_90401353_90401802_90402498_90402671_90406292_90406410_90407943_90408040_90411117_90411281_90411849_90412026_90412485_90412700_90413289_90413433_90416190_90416337_90416496_90416609_90426101_90426251_90432899_90433003_90433346_90433491_90433694_90433823_90435107_90435196_90436442_90436553_90437096_90437289_90438806_90439045_90441060_90441156_90443443_90443678_90445845_90445994_90446398_90446547_90447847_90448005_90451770_90451925_90513525
transcript_44035.known	chr5	-	1967	9	FSM	ENSMUSG00000029397.16	ENSMUST00000031345.15	1967	9	0	0	0	0	multi-exon	FALSE	canonical	3	292	junction_5	17.5926120857592	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTTTTATGGATGAATG	1335	False	NA	NA	False	TATAAA	-18	NA	92110927	92096762	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_92097724_92099679_92099801_92100799_92100827_92100911_92100971_92101072_92101118_92103393_92103473_92105393_92105510_92105736_92105857_92110488
transcript_44038.known	chr5	+	650	5	FSM	ENSMUSG00000102644.6	ENSMUST00000192939.6	650	5	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	9.73075022801428	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGTCACTGAGGAAGACAAT	NA	False	NA	NA	False	AAAACA	-8	NA	92110748	92117525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_92110838_92111541_92111645_92112954_92113164_92114310_92114434_92117399
transcript_44043.known	chr5	-	1046	1	FSM	ENSMUSG00000029397.16	ENSMUST00000200905.2	1046	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAATAAGAAAAAAAAAAAAA	1677	False	NA	NA	False	NA	NA	NA	92110585	92109539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_92109500_92110600
transcript_44045.known	chr5	-	2716	12	FSM	ENSMUSG00000029405.17	ENSMUST00000169094.8	2716	12	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_11	559.822935407495	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGTTCTTCAGTTAAC	NA	False	NA	-9	True	AGTAAA	-17	NA	92231372	92201575	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
transcript_44046.known	chr5	-	1884	12	FSM	ENSMUSG00000029405.17	ENSMUST00000202258.4	1884	12	0	0	0	0	multi-exon	FALSE	canonical	3	524	junction_5	444.293682188997	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGCCCACTGAGTTCA	NA	False	NA	NA	False	AATGAA	-19	NA	92231517	92202358	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92211195_92211295_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
transcript_4405.nic	chr10	+	1752	6	ISM	ENSMUSG00000037846.19	ENSMUST00000117086.2	2246	12	-174	35747	-29	-35747	5prime_fragment	FALSE	canonical	3	63	junction_2	12.9676520619579	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTAGCCTGCATGTTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	67815370	67842381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_67815643_67823136_67823334_67833394_67833454_67837753_67837808_67839033_67839152_67841329
transcript_44051.known	chr5	-	4232	11	FSM	ENSMUSG00000029405.17	ENSMUST00000167918.8	4232	11	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_10	456.056180749697	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTAATCTGAAGTTATA	NA	False	NA	0	True	AATAAA	-33	NA	92231416	92200004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231193
transcript_44052.known	chr5	-	4182	11	FSM	ENSMUSG00000029405.17	ENSMUST00000113127.7	4182	11	0	0	0	0	multi-exon	FALSE	canonical	3	1117	junction_4	208.26764030929	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTTATCTATGTCCCTA	NA	False	NA	-18	True	AATAAA	-15	NA	92231578	92200022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_92202913_92203242_92203362_92204127_92204257_92205826_92205930_92212183_92212365_92213610_92213714_92214350_92214442_92216183_92216358_92218215_92218298_92221018_92221138_92231387
transcript_4406.known	chr10	-	7581	10	FSM	ENSMUSG00000019947.11	ENSMUST00000219238.2	7581	10	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_9	46.8506953451172	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGAGTGTCTGTCTCTTAT	5326	False	NA	-4	True	AATAAA	-23	NA	68114570	67928349	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_67934500_67937724_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_68021855_68022087_68078833_68079060_68113759_68114015_68114519
transcript_44065.known	chr5	+	3898	24	FSM	ENSMUSG00000029407.11	ENSMUST00000031355.10	3898	24	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	100.480471444838	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATCTCTGTCATTGTTC	NA	False	NA	10	True	AATAAA	-18	NA	92285796	92350654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_92286023_92300299_92300387_92300710_92300776_92306262_92306340_92314389_92314491_92314884_92314988_92315136_92315193_92318531_92318653_92321784_92321964_92325293_92325435_92328400_92328490_92329198_92329354_92329756_92329969_92335093_92335205_92335556_92335676_92335801_92335984_92337081_92337204_92340571_92340711_92341870_92342035_92343206_92343294_92346194_92346294_92347675_92347784_92348993_92349210_92349715
transcript_44068.known	chr5	+	3549	13	FSM	ENSMUSG00000029407.11	ENSMUST00000201380.2	3549	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	129.019674425604	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACCAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	92285805	92331914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_92286023_92300299_92300387_92300710_92300776_92306262_92306340_92314389_92314491_92314884_92314988_92315136_92315193_92318531_92318653_92321784_92321964_92325293_92325435_92328400_92328490_92329198_92329354_92329756
transcript_44069.known	chr5	+	2427	12	FSM	ENSMUSG00000029407.11	ENSMUST00000201642.2	2427	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	139.72251130469	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATCTCTGTCATTGTTCC	NA	False	NA	11	True	AATAAA	-19	NA	92285824	92350655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_92286023_92300299_92300360_92335563_92335676_92335801_92335984_92337081_92337204_92340571_92340711_92341870_92342035_92343206_92343294_92346194_92346294_92347675_92347784_92348993_92349210_92349715
transcript_4407.nic	chr10	-	1022	6	ISM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	-256	5484	-256	-5484	5prime_fragment	FALSE	canonical	3	87	junction_5	23.2292918531754	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAAAAAGAGAACACCC	NA	False	NA	NA	False	AAAACA	-2	NA	67972712	67937767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_67937924_67954080_67954179_67962528_67962582_67964618_67964824_67970823_67970937_67972315
transcript_44071.known	chr5	-	636	1	FSM	ENSMUSG00000084111.5	ENSMUST00000121821.2	636	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2651	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTGGAGAGTTGCA	NA	False	NA	NA	False	AAAAAG	-44	NA	92288788	92288152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_92288200_92288800
transcript_44075.known	chr5	-	2414	11	FSM	ENSMUSG00000029413.15	ENSMUST00000113102.10	2414	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	5.44885309033011	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAGGTCTGAGTGTCCTAC	9198	False	NA	-1	True	NA	NA	NA	92426029	92405517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_92406803_92407412_92407491_92409210_92409240_92410367_92410435_92411268_92411332_92411449_92411623_92412939_92413017_92415900_92415992_92420302_92420430_92424777_92424943_92425770
transcript_44078.known	chr5	-	5020	22	FSM	ENSMUSG00000029415.5	ENSMUST00000031364.5	5020	22	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_13	31.6626205793221	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGTGAAATCTCTCCAT	NA	False	NA	-6	True	AATAAA	-17	NA	92457883	92431868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_92434730_92436325_92436488_92437598_92437684_92437779_92437971_92438116_92438212_92438871_92438999_92439565_92439643_92439744_92439843_92440511_92440589_92441821_92441881_92443869_92443928_92444978_92445083_92446050_92446121_92447920_92448023_92449670_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
transcript_4408.nic	chr10	-	600	3	ISM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	-190	32384	-190	-32384	5prime_fragment	FALSE	canonical	3	87	junction_2	21.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAGAAAAACGCCCATCGA	NA	False	NA	NA	False	TATAAA	-10	NA	67972646	67964667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_67964824_67970823_67970937_67972315
transcript_44084.known	chr5	-	996	8	FSM	ENSMUSG00000029415.5	ENSMUST00000202604.2	996	8	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_2	27.4456791885799	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACCAAAATAAGAAGGAA	NA	False	NA	NA	False	NA	NA	NA	92457848	92449493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_92449746_92450497_92450556_92451524_92451626_92451742_92451815_92452831_92452943_92453062_92453162_92453591_92453697_92457650
transcript_44087.known	chr5	-	2352	12	FSM	ENSMUSG00000034826.15	ENSMUST00000038514.15	2352	12	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_1	63.2088235288462	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTCTGGTGTTTTATTT	NA	False	NA	0	True	AATAAA	-25	NA	92583078	92563398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92573481_92573670_92575958_92576186_92578659_92578813_92578897_92578982_92582862
transcript_44089.nnic	chr5	-	2202	11	NIC	ENSMUSG00000034826.15	novel	2352	12	NA	NA	-38	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_7	179.096761556428	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGTCTGGTGTTTTATTT	NA	False	NA	0	True	AATAAA	-25	NA	92583116	92563398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_92564198_92565311_92565423_92565639_92565760_92567375_92567484_92570340_92570435_92570835_92570891_92572132_92572330_92575958_92576186_92578659_92578813_92578897_92578982_92582862
transcript_4409.nic	chr10	-	362	2	ISM	ENSMUSG00000019947.11	ENSMUST00000218532.2	3025	7	-190	38622	-190	-38622	5prime_fragment	FALSE	canonical	3	87	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAACATGTCCCCAGAGAA	NA	False	NA	NA	False	NA	NA	NA	67972646	67970905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_67970937_67972315
transcript_44093.known	chr5	-	631	4	FSM	ENSMUSG00000034826.15	ENSMUST00000122893.2	631	4	0	0	0	0	multi-exon	FALSE	canonical	3	581	junction_1	53.8908361618395	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCTTGTTTTTTTAGTA	NA	False	NA	NA	False	ATTAAA	-16	NA	92582950	92575879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_92576186_92578659_92578813_92578897_92578982_92582862
transcript_44098.known	chr5	-	4698	12	FSM	ENSMUSG00000029426.9	ENSMUST00000031377.9	4698	12	0	0	0	0	multi-exon	TRUE	canonical	3	99	junction_7	16.1496104397404	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCACTGTGAACTGTCTC	NA	False	NA	-11	True	ATTAAA	-16	NA	92653496	92589172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_92592144_92594162_92594322_92596403_92596456_92597729_92597804_92599205_92599325_92601898_92602069_92602590_92602711_92607900_92607993_92608612_92608802_92609795_92609944_92633055_92633214_92653050
transcript_44099.known	chr5	+	5028	10	FSM	ENSMUSG00000058013.12	ENSMUST00000074733.11	5028	10	0	0	0	0	multi-exon	FALSE	canonical	3	652	junction_7	47.9165942028438	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGTGTGCCCGTTTGTG	NA	False	NA	12	True	AATATA	-17	NA	93241295	93322817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358_93315547_93319197
transcript_441.known	chr1	+	1261	5	FSM	ENSMUSG00000025933.16	ENSMUST00000027064.8	1261	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	35.5984550226551	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGCCTTCTCATTCATTTC	NA	False	NA	14	True	AATAAA	-14	NA	21288885	21300388	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_21289114_21295781_21295868_21296168_21296271_21296815_21296904_21299631
transcript_4410.known	chr10	-	1262	8	FSM	ENSMUSG00000019945.11	ENSMUST00000020103.9	1262	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.349927106111883	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGAAACCAGCCTTTTGAA	NA	False	NA	NA	False	AATAAA	-21	NA	68377726	68266782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_68267154_68272109_68272251_68272672_68272796_68345526_68345600_68352095_68352241_68361427_68361598_68369641_68369731_68377576
transcript_44101.known	chr5	+	1792	10	FSM	ENSMUSG00000058013.12	ENSMUST00000202308.4	1792	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	237.094813560491	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGCCCATCCCTGCCT	NA	False	NA	4	True	TTTAAA	-16	NA	93241309	93324296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358_93315547_93323898
transcript_44102.nic	chr5	+	1520	5	ISM	ENSMUSG00000058013.12	ENSMUST00000201700.4	3478	9	-10	12056	-9	0	5prime_fragment	FALSE	canonical	3	719	junction_4	22.6867251933813	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATATCATAGTACTTTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	93241286	93305561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709
transcript_44104.known	chr5	+	3478	9	FSM	ENSMUSG00000058013.12	ENSMUST00000201700.4	3478	9	0	0	0	0	multi-exon	FALSE	canonical	3	652	junction_7	50.8046196226288	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGTCAAAAAA	NA	False	NA	NA	False	NA	NA	NA	93241296	93317617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_93241457_93287307_93287423_93296245_93296442_93302728_93302916_93304709_93304872_93309008_93309106_93309982_93310152_93313107_93313241_93315358
transcript_44105.known	chr5	-	1903	1	FSM	ENSMUSG00000106870.2	ENSMUST00000201581.2	1903	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCTTCCCCATTATCCCTA	NA	False	NA	NA	False	AATAAA	-19	NA	93333617	93331714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_93331700_93333600
transcript_44106.known	chr5	+	2570	7	FSM	ENSMUSG00000029385.15	ENSMUST00000121127.2	2570	7	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	9.62057979310787	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTATTCCTATTTCAGT	NA	False	NA	NA	False	AATAAA	-21	NA	93416172	93424083	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_93416619_93417123_93417262_93418652_93418904_93419059_93419139_93419221_93419321_93421196_93421403_93422732
transcript_44108.known	chr5	-	3040	4	FSM	ENSMUSG00000034724.19	ENSMUST00000152490.8	3040	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	4.78423336480244	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TAAAAAGAAAATAACCTATA	NA	False	NA	NA	False	AATAAA	-30	NA	96234792	96223434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_96225252_96227791_96227995_96230728_96230957_96234000
transcript_44114.known	chr5	+	3431	9	FSM	ENSMUSG00000029486.14	ENSMUST00000036437.13	3431	9	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_1	44.6738178355063	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTATCTTTATTCTATT	NA	False	NA	NA	False	ATTAAA	-31	NA	96357973	96414568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_96358053_96361645_96361770_96371629_96371892_96374143_96374228_96375538_96375611_96379539_96379652_96386697_96386805_96409920_96410003_96412059
transcript_44117.known	chr5	+	1550	7	FSM	ENSMUSG00000029486.14	ENSMUST00000121477.2	1550	7	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_1	19.5078331845327	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGGTGTTTTACAGTTA	NA	False	NA	NA	False	AATAAA	-21	NA	96358002	96387543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_96358053_96361645_96361770_96371629_96371892_96374143_96374228_96375538_96375611_96379539_96379652_96386697
transcript_44118.known	chr5	+	1595	13	FSM	ENSMUSG00000029484.13	ENSMUST00000031447.12	1595	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.64991582276861	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGTGCTTCTGTTACTT	NA	False	NA	NA	False	AATACA	-15	NA	96941243	96993825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_96941423_96945259_96945313_96958908_96958997_96960700_96960796_96964199_96964314_96968260_96968352_96972745_96972826_96976206_96976264_96976555_96976650_96978251_96978348_96982633_96982693_96986151_96986275_96993359
transcript_44120.known	chr5	-	3424	2	FSM	ENSMUSG00000046000.6	ENSMUST00000060265.6	3424	2	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAAGTGAGTTAATAACAT	NA	False	NA	-3	True	AATAAA	-19	NA	97540238	97530056	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_97532729_97539486
transcript_44123.known	chr5	+	677	6	FSM	ENSMUSG00000105078.3	ENSMUST00000198837.3	677	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.03960780543711	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTACAGAGCTCTGCACCCA	NA	False	NA	NA	False	AATAAA	-13	NA	100054174	100098951	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_100054265_100067054_100067126_100070875_100070973_100072700_100072803_100089084_100089247_100098796
transcript_44125.known	chr5	-	6811	9	FSM	ENSMUSG00000000568.16	ENSMUST00000172361.8	6811	9	0	0	0	0	multi-exon	FALSE	canonical	3	2301	junction_7	859.13983145935	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTGCACTGTCTTTT	NA	False	NA	1	True	ATTAAA	-19	NA	100126797	100103793	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_100109193_100110373_100110472_100111589_100111737_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115247_100124392_100124450_100126250
transcript_44129.nnic	chr5	-	1051	7	NNC	ENSMUSG00000000568.16	novel	1537	7	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	canonical	2	184	junction_6	1739.8817408727	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTGGCTCTTTTATCAT	NA	False	NA	NA	False	AATAAA	-17	NA	100126828	100108860	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_100109193_100110373_100110472_100111842_100111943_100112528_100112661_100113880_100114043_100115077_100115230_100126753
transcript_44133.known	chr5	-	2149	9	FSM	ENSMUSG00000029328.16	ENSMUST00000086900.11	2149	9	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_2	358.236915322807	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGTTTTCCTGCGTCAGGT	NA	False	NA	-20	True	AATAAA	-15	NA	100187523	100182585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_100182844_100183493_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
transcript_44136.known	chr5	-	2752	8	FSM	ENSMUSG00000029328.16	ENSMUST00000128187.8	2752	8	0	0	0	0	multi-exon	FALSE	canonical	3	572	junction_1	185.830183616271	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCAGTTAAGTCTTGCTAT	NA	False	NA	-14	True	AATAAA	-18	NA	100187081	100181435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
transcript_44137.known	chr5	-	1477	8	FSM	ENSMUSG00000029328.16	ENSMUST00000149384.8	1477	8	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_7	409.537668646996	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTGTTCATTCTTTAAGA	NA	False	NA	NA	False	NA	NA	NA	100186754	100183284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
transcript_44142.nic	chr5	-	1445	8	NIC	ENSMUSG00000029328.16	novel	2752	8	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_7	355.117974073693	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186772	100182579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_100182844_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186432
transcript_44145.nic	chr5	-	2079	8	NIC	ENSMUSG00000029328.16	novel	2149	9	NA	NA	-43	0	intron_retention	FALSE	canonical	3	230	junction_1	297.206243239284	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186797	100182579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
transcript_4415.known	chr10	-	4375	8	FSM	ENSMUSG00000019942.14	ENSMUST00000020099.13	4375	8	0	0	0	0	multi-exon	TRUE	canonical	3	2056	junction_1	102.156542539739	887	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGGACTTAAGCAGATGTTT	NA	False	NA	4	True	AATAAA	-23	NA	69188768	69170975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_69174427_69176310_69176453_69176544_69176709_69178369_69178541_69180890_69181015_69181904_69182062_69185925_69185989_69188665
transcript_44151.nic	chr5	-	1220	8	ISM	ENSMUSG00000029328.16	ENSMUST00000086900.11	2149	9	726	853	-43	-154	5prime_fragment	FALSE	canonical	3	230	junction_1	297.206243239284	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTTGGCTTCTTTTTTAA	NA	False	NA	-9	True	ATTAAA	-14	NA	100186797	100183438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_100183599_100183962_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
transcript_44157.known	chr5	-	2374	7	FSM	ENSMUSG00000029328.16	ENSMUST00000153442.8	2374	7	0	0	0	0	multi-exon	FALSE	canonical	3	934	junction_3	92.4764234218046	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186728	100182579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_100184055_100184339_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
transcript_44164.nic	chr5	-	2728	6	NIC	ENSMUSG00000029328.16	novel	2374	7	NA	NA	-43	0	intron_retention	FALSE	canonical	3	934	junction_2	94.4681957062799	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGCGTCAGGTACTGCA	NA	False	NA	-14	True	AATAAA	-21	NA	100186797	100182579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_100184511_100184720_100184836_100184943_100185076_100185426_100185589_100185671_100185841_100186578
transcript_44165.known	chr5	+	1420	7	FSM	ENSMUSG00000029326.14	ENSMUST00000031268.8	1420	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_6	172.72618021983	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTTTCATACAGACGT	NA	False	NA	15	True	AATAAA	-15	NA	100187902	100216619	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657_100215801_100216154
transcript_44169.known	chr5	+	1833	6	FSM	ENSMUSG00000029326.14	ENSMUST00000169390.8	1833	6	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_1	20.2918702932973	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACAGTTTCATACAGACGT	NA	False	NA	15	True	AATAAA	-15	NA	100187843	100216619	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_100188162_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
transcript_44171.nnic	chr5	+	1718	6	NNC	ENSMUSG00000029326.14	novel	1833	6	NA	NA	16	-70	intron_retention	FALSE	canonical	3	76	junction_1	168.151122505917	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGTTTATTCTGATGCA	NA	False	NA	8	True	TATAAA	-19	NA	100187859	100216549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_100188133_100206998_100207101_100208832_100209027_100210001_100210135_100211617_100211742_100215657
transcript_44178.known	chr5	+	1107	4	FSM	ENSMUSG00000100157.7	ENSMUST00000185221.7	1107	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.69967317119759	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTGTTTACTTGGATAT	NA	False	NA	NA	False	AATAAA	-12	NA	100358550	100365908	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_100358887_100363664_100363725_100364472_100364581_100365305
transcript_44180.nnic	chr5	-	4117	26	NIC	ENSMUSG00000035325.17	novel	4228	28	NA	NA	-6	0	combination_of_known_splicesites	TRUE	canonical	2	64	junction_13	176.439469507251	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGTTAGTCTTTATTTAT	8102	False	NA	-7	True	ATTAAA	-19	NA	100564099	100509507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100521238_100521575_100523066_100523191_100526686_100526861_100529018_100529193_100530620_100530767_100531655_100531783_100532982_100533162_100533986_100534063_100536926_100536966_100538617_100538693_100540253_100540488_100540721_100540875_100541061_100541224_100543660_100543761_100547205_100547349_100550073_100550215_100551873_100551970_100553302_100553502_100555015_100555140_100555892_100555973_100563961
transcript_44183.known	chr5	-	1195	7	FSM	ENSMUSG00000035325.17	ENSMUST00000182433.8	1195	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	364.036361126498	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACAGTTAGTCTTTATTTA	NA	False	NA	-8	True	ATTAAA	-18	NA	100521343	100509508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_100510090_100511235_100511308_100511686_100511807_100513589_100513854_100516152_100516212_100517454_100517494_100521283
transcript_44187.known	chr5	-	626	5	FSM	ENSMUSG00000097772.8	ENSMUST00000181873.8	626	5	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_4	12.3389626792531	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACATTAGAATGTTGTGTT	NA	False	NA	-7	True	AATAAA	-31	NA	100577394	100568700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_100568832_100569826_100569901_100574594_100574664_100576955_100577098_100577184
transcript_44191.nic	chr5	+	1631	9	NIC	ENSMUSG00000035297.15	novel	1755	10	NA	NA	21	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_1	442.714284273729	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCAGTACTTGGTTTTTAAT	5294	False	NA	20	True	AATAAA	-22	NA	100666195	100695646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_100666417_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
transcript_44193.known	chr5	+	1755	10	FSM	ENSMUSG00000035297.15	ENSMUST00000045993.15	1755	10	0	0	0	0	multi-exon	FALSE	canonical	3	1193	junction_9	105.134834062424	707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGGTGTTCTATTCCTTTT	5273	False	NA	43	True	AATAAA	-45	NA	100666174	100695669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912_100678017_100681107_100681262_100681377_100681529_100685163_100685335_100689402_100689519_100691704_100691790_100695169
transcript_44194.known	chr5	+	2389	4	FSM	ENSMUSG00000035297.15	ENSMUST00000147729.8	2389	4	0	0	0	0	multi-exon	FALSE	canonical	3	1291	junction_2	34.9380403953437	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAAAAAAAAAAACTG	5407	False	NA	NA	False	AATGAA	-12	NA	100666308	100679961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_100666417_100675839_100675920_100676404_100676557_100677912
transcript_44195.known	chr5	-	744	5	FSM	ENSMUSG00000029322.13	ENSMUST00000031264.12	744	5	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_1	0.82915619758885	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTTTTGTGTGTGGT	NA	False	NA	NA	False	AATAAA	-19	NA	100720111	100701590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_100701855_100704345_100704462_100707617_100707743_100710490_100710629_100720010
transcript_44196.known	chr5	-	3117	12	FSM	ENSMUSG00000035273.15	ENSMUST00000045617.15	3117	12	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_7	2.99862227317648	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCATGGTCATTCTTCTA	NA	False	NA	NA	False	AATAAA	-19	NA	100867582	100827349	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_100828897_100832845_100832993_100836686_100836806_100839164_100839280_100840048_100840156_100840750_100840845_100842017_100842066_100843352_100843522_100846778_100846953_100856522_100856649_100859194_100859341_100867257
transcript_44199.nic	chr5	-	1135	2	ISM	ENSMUSG00000035266.17	ENSMUST00000151201.2	1628	8	-30	13062	-9	-4470	5prime_fragment	FALSE	canonical	3	68	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGAGTATCAGTTGCGTT	NA	False	NA	NA	False	NA	NA	NA	100946473	100944107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_100944929_100946159
transcript_442.known	chr1	+	1168	5	FSM	ENSMUSG00000025933.16	ENSMUST00000027065.12	1168	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_4	3.08220700148449	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCTCATTCATTTCTAT	NA	False	NA	17	True	AATAAA	-17	NA	21288798	21300391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_21289114_21295781_21295868_21296168_21296271_21296815_21296904_21299814
transcript_44201.known	chr5	+	638	6	FSM	ENSMUSG00000016833.15	ENSMUST00000016977.15	638	6	0	0	0	0	multi-exon	FALSE	canonical	3	1615	junction_5	130.796636042369	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTGGAAATGTCTTTC	NA	False	NA	51	True	AATAAA	-33	NA	100946492	100952337	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100950918_100950977_100951835_100951896_100952197
transcript_44204.known	chr5	+	460	5	FSM	ENSMUSG00000016833.15	ENSMUST00000112898.8	460	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	755.69086768334	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCAACTAATTTGAGTGGA	NA	False	NA	41	True	AATAAA	-23	NA	100946602	100952327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_100946727_100947417_100947480_100949773_100949858_100951835_100951896_100952197
transcript_44206.known	chr5	+	457	5	FSM	ENSMUSG00000016833.15	ENSMUST00000198453.2	457	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	769.215631341433	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATTTGAGTGGAAATGTCT	NA	False	NA	48	True	AATAAA	-30	NA	100946608	100952334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_100946727_100949773_100949858_100950918_100950977_100951835_100951896_100952197
transcript_44212.known	chr5	-	2139	9	FSM	ENSMUSG00000035234.19	ENSMUST00000055245.13	2139	9	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_2	23.2725025512943	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTAATATCTTATTTTT	NA	False	NA	-3	True	AATAAA	-19	NA	100968831	100953057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_100954356_100954644_100954757_100957424_100957510_100957621_100957742_100959874_100960069_100963027_100963095_100965827_100965865_100966382_100966474_100968696
transcript_44214.known	chr5	-	358	2	FSM	ENSMUSG00000035234.19	ENSMUST00000131857.2	358	2	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	TTTAAA	-43	NA	100968806	100966225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_100966474_100968696
transcript_44216.known	chr5	+	2884	13	FSM	ENSMUSG00000029314.15	ENSMUST00000031255.15	2884	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	3.86939558874797	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGTTGCATTATTCTTC	NA	False	NA	5	True	AATAAA	-16	NA	100994084	101046965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_100994228_100994520_100994815_101005007_101005075_101031055_101031327_101032183_101032259_101032825_101032916_101033791_101033886_101037968_101038085_101039508_101039565_101040166_101040253_101040937_101041067_101041298_101041379_101045582
transcript_44217.known	chr5	+	707	4	FSM	ENSMUSG00000092354.8	ENSMUST00000173965.8	707	4	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_2	58.0574428188726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCAAGGATGTTAAAGGAG	NA	False	NA	-40	True	NA	NA	NA	101985307	101992143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_101985425_101989616_101989710_101989836_101989940_101991749
transcript_44218.known	chr5	+	619	3	FSM	ENSMUSG00000092354.8	ENSMUST00000174312.2	619	3	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_2	60.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAATTTCCTTTGGCTCA	NA	False	NA	15	True	ATTAAA	-25	NA	101988020	101992198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_101988098_101989616_101989710_101991749
transcript_44219.nnic	chr5	+	1843	10	NNC	ENSMUSG00000034573.15	novel	7915	48	NA	NA	50396	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_3	5.55999822364302	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACCTGTGTCATCTCACT	4828	False	NA	NA	False	AATATA	-42	NA	103727827	103746169	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_103727978_103728535_103728619_103730604_103730643_103734571_103734676_103735908_103736058_103737723_103737815_103738881_103739220_103741372_103741589_103742482_103742546_103745558
transcript_44220.known	chr5	+	1613	7	FSM	ENSMUSG00000029313.19	ENSMUST00000126335.2	1613	7	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	18.46994555728	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGTTAATATTACATGGC	NA	False	NA	NA	False	ATTAAA	-13	NA	103840239	103964294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_103840470_103863215_103863272_103930989_103931111_103931521_103932380_103958928_103958974_103962847_103962935_103964078
transcript_44221.nic	chr5	-	1416	3	ISM	ENSMUSG00000029312.13	ENSMUST00000131843.2	2283	7	18696	0	6775	0	3prime_fragment	FALSE	canonical	3	128	junction_2	5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GCAGAAAAAAATGGAAACTA	6740	False	NA	NA	False	AATAAA	-16	NA	104015460	104009945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_104011058_104012067_104012270_104015358
transcript_44223.nic	chr5	+	1521	8	NIC	ENSMUSG00000029310.14	novel	995	6	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	64	junction_1	99.0728447730687	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTTCAAGTTCTCCC	NA	False	NA	20	True	AATAAA	-23	NA	104194393	104213245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_104194705_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
transcript_44224.nnic	chr5	+	1248	8	NNC	ENSMUSG00000029310.14	novel	1488	8	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	118.273808924677	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTTCAAGTTCTCCC	NA	False	NA	20	True	AATAAA	-23	NA	104194707	104213245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_104194746_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
transcript_44225.known	chr5	+	1488	8	FSM	ENSMUSG00000029310.14	ENSMUST00000031250.14	1488	8	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_1	16.2468207250979	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTTTCAAGTTCTCCC	NA	False	NA	20	True	AATAAA	-23	NA	104194734	104213245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_104195013_104198443_104198684_104202137_104202234_104203355_104203443_104205972_104206085_104207501_104207649_104209539_104209625_104212802
transcript_44238.known	chr5	+	1410	7	FSM	ENSMUSG00000029304.15	ENSMUST00000031243.15	1410	7	0	0	0	0	multi-exon	FALSE	canonical	3	5474	junction_3	341.773032223953	3457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGTCTGGTGGTGTCAATT	NA	False	NA	31	True	AATAAA	-18	NA	104582983	104588916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_104583063_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
transcript_44239.known	chr5	+	1456	7	FSM	ENSMUSG00000029304.15	ENSMUST00000112748.8	1456	7	0	0	0	0	multi-exon	FALSE	canonical	3	593	junction_1	2050.93187491822	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGAGTCTGGTGGTGTCA	NA	False	NA	28	True	AATAAA	-15	NA	104582986	104588913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_104583115_104584240_104584309_104584406_104584443_104585520_104585602_104586091_104586134_104587130_104587413_104588094
transcript_4424.known	chr10	+	3751	20	FSM	ENSMUSG00000069601.15	ENSMUST00000181974.8	3751	20	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_16	12.5742118370934	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCTGCTGCAAATTTAAATAA	NA	False	NA	NA	False	NA	NA	NA	69761783	69860473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_69762022_69763524_69763649_69768223_69768327_69786781_69786889_69791755_69791981_69794747_69794903_69809551_69809764_69811877_69812086_69813542_69813640_69814300_69814530_69815147_69815274_69816101_69816225_69817945_69818028_69830201_69830277_69833924_69834057_69835184_69835329_69838340_69838432_69840439_69840822_69851397_69851484_69859661
transcript_44242.nnic	chr5	-	1482	7	NNC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	70	10190	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_3	86.7437157506077	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGGAAATTTTCTGCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	105007866	104950844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_104951336_104952168_104952309_104953146_104953426_104963251_104963302_104964564_104964626_104964862_104964990_105007532
transcript_44244.nnic	chr5	-	1508	6	NNC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	-6	10190	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	83.4491461909587	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATGGAAATTTTCTGCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	105007942	104950844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_104951336_104952168_104952309_104953146_104953426_104964564_104964626_104964862_104964990_105007532
transcript_44248.known	chr5	-	2904	5	FSM	ENSMUSG00000072774.11	ENSMUST00000186219.7	2904	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	90.557647385519	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGAGGAATTGTGCGTT	NA	False	NA	-9	True	NA	NA	NA	105007936	104961034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_104963302_104964564_104964626_104964862_104964990_104965173_104965219_105007532
transcript_44252.nnic	chr5	-	2865	4	NIC	ENSMUSG00000072774.11	novel	2904	5	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	193	junction_3	15.5134350376268	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATGAGGAATTGTGCGTT	NA	False	NA	-9	True	NA	NA	NA	105007942	104961034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_104963302_104964564_104964626_104964862_104964990_105007532
transcript_4426.known	chr10	+	3756	6	FSM	ENSMUSG00000037762.7	ENSMUST00000046807.7	3756	6	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	10.3846039885977	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTTGTTTTCGTCAATA	NA	False	NA	22	True	AATAAA	-30	NA	70080929	70121798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_70081209_70091789_70092023_70102921_70103066_70110755_70110852_70118118_70119028_70119703
transcript_44260.known	chr5	+	3929	3	FSM	ENSMUSG00000046079.17	ENSMUST00000120847.8	3929	3	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	122	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGTAGTGGTTCACAACCTT	4891	False	NA	19	True	AATAAA	-30	NA	105848654	105963076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_105848952_105880095_105880241_105959589
transcript_44262.known	chr5	-	393	1	FSM	ENSMUSG00000067058.8	ENSMUST00000132586.2	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	35	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATGTAAAGCATAAATAAAAG	NA	False	NA	NA	False	AAAACA	-35	NA	105945579	105945186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_105945200_105945600
transcript_44263.known	chr5	+	2667	12	FSM	ENSMUSG00000029290.13	ENSMUST00000031227.11	2667	12	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_1	8.12708968677346	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTTCTTTTGTCATGT	NA	False	NA	NA	False	AATACA	-16	NA	106024433	106063684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_106024565_106026614_106026660_106034052_106034089_106034182_106034295_106036299_106036706_106038983_106039183_106044357_106044470_106053780_106053929_106054904_106055005_106058036_106058168_106059278_106059375_106062533
transcript_44267.nic	chr5	+	1038	7	ISM	ENSMUSG00000029290.13	ENSMUST00000031227.11	2667	12	-24	19242	-21	71	5prime_fragment	FALSE	canonical	3	25	junction_1	3.39934634239519	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGTGAAAAATATGGAGATG	NA	False	NA	NA	False	NA	NA	NA	106024409	106044442	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_106024565_106026614_106026660_106034052_106034089_106034182_106034295_106036299_106036706_106038983_106039183_106044357
transcript_44268.nic	chr5	+	860	6	ISM	ENSMUSG00000029290.13	ENSMUST00000031227.11	2667	12	-24	24595	-21	3192	5prime_fragment	FALSE	canonical	3	25	junction_1	2.65329983228432	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGATGCAAATATTTATTAAG	NA	False	NA	NA	False	AATAAA	-9	NA	106024409	106039089	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_106024565_106026614_106026660_106034052_106034089_106034182_106034295_106036299_106036706_106038983
transcript_44269.known	chr5	-	449	2	FSM	ENSMUSG00000099061.2	ENSMUST00000124394.3	449	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGTTACGGTTCTGTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	106722584	106705604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_106705923_106722453
transcript_44275.known	chr5	-	2559	6	FSM	ENSMUSG00000049606.17	ENSMUST00000127434.8	2559	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	28.4351894665747	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAGAAAAAATGACAGC	NA	False	NA	NA	False	NA	NA	NA	106844692	106784672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_106786502_106814650_106814712_106829769_106829880_106838536_106838744_106843508_106843566_106844397
transcript_44284.known	chr5	+	2961	12	FSM	ENSMUSG00000029283.18	ENSMUST00000031221.12	2961	12	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_8	37.8828119074671	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCAGAATACTTATTTAAA	NA	False	NA	10	True	AATAAA	-15	NA	107112187	107132298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107122563_107123350_107123527_107124495_107124579_107127160_107127311_107130829
transcript_44286.known	chr5	+	3679	11	FSM	ENSMUSG00000029283.18	ENSMUST00000140378.8	3679	11	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_7	28.5629130167075	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCAGAATACTTATTTAAA	NA	False	NA	10	True	AATAAA	-15	NA	107112257	107132298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107122466_107123527_107124495_107124579_107127160_107127311_107130829
transcript_44287.known	chr5	+	2864	11	FSM	ENSMUSG00000029283.18	ENSMUST00000117196.9	2864	11	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_7	74.2377262582846	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATCAGAATACTTATTTAA	NA	False	NA	9	True	AATAAA	-14	NA	107112187	107132297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107123350_107123527_107124495_107124579_107127160_107127311_107130829
transcript_44288.known	chr5	+	2785	11	FSM	ENSMUSG00000029283.18	ENSMUST00000076467.13	2785	11	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_9	99.5953814190196	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATCAGAATACTTATTTAAA	NA	False	NA	10	True	AATAAA	-15	NA	107112246	107132298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_107112292_107112798_107112981_107116723_107116808_107117024_107117161_107120612_107120707_107120790_107120934_107121642_107121887_107123350_107123527_107124495_107124579_107127181_107127311_107130829
transcript_44295.known	chr5	-	6087	17	FSM	ENSMUSG00000029287.15	ENSMUST00000031224.15	6087	17	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_8	3.80788655293195	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGTCATATCTGGTCAT	277	False	NA	-5	True	AATAAA	-20	NA	107437495	107254435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_107257624_107266284_107266393_107269225_107269274_107278326_107278445_107280598_107280896_107284784_107284944_107285395_107285537_107287634_107287788_107288249_107288579_107290222_107290413_107295891_107296040_107297655_107297825_107302117_107302302_107325670_107325809_107362758_107362944_107414059_107414217_107437120
transcript_44296.known	chr5	+	1607	7	FSM	ENSMUSG00000029279.16	ENSMUST00000112677.10	1607	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	0.74535599249993	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTAAACTTTGTGTTTGCC	NA	False	NA	NA	False	AGTAAA	-15	NA	107479040	107498607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_107479174_107489165_107489308_107489885_107490126_107491418_107491557_107493001_107493117_107496331_107496505_107497941
transcript_443.known	chr1	+	1457	7	FSM	ENSMUSG00000025934.16	ENSMUST00000027067.15	1457	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	32.5883414736007	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGGGGGAGGTGTCTGA	NA	False	NA	NA	False	NA	NA	NA	21310812	21335885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_21310884_21319974_21320083_21327554_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
transcript_44303.known	chr5	-	2015	19	FSM	ENSMUSG00000029276.14	ENSMUST00000078021.13	2015	19	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_15	25.8010551033179	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTGCATAATTCTTTT	NA	False	NA	NA	False	CATAAA	-27	NA	107745505	107696832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653_107744729_107745409
transcript_44305.nnic	chr5	-	1933	19	NNC	ENSMUSG00000029276.14	novel	2015	19	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_2	64.3508180039522	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTCATTATACTTTAT	NA	False	NA	NA	False	AATAAA	-15	NA	107745519	107696889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_107697042_107697256_107697301_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723207_107726316_107726434_107741618_107741745_107744653_107744729_107745409
transcript_44311.nic	chr5	-	1996	19	NIC	ENSMUSG00000029276.14	novel	2042	19	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_15	56.5136550744733	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTCATTATACTTTAT	NA	False	NA	NA	False	AATAAA	-15	NA	107745519	107696889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_107697042_107697256_107697340_107698837_107698962_107705147_107705212_107705783_107705891_107706327_107706413_107708741_107708816_107708918_107708961_107709707_107709798_107710110_107710142_107710616_107710671_107717995_107718184_107720145_107720249_107721550_107721789_107723097_107723231_107726316_107726434_107741618_107741745_107744653_107744729_107745409
transcript_44318.known	chr5	+	2268	13	FSM	ENSMUSG00000033773.15	ENSMUST00000065422.12	2268	13	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	12.1951720866178	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTTTCAGAAGCTGACA	NA	False	NA	26	True	AATAAA	-19	NA	107745600	107809704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_107745727_107746387_107746434_107749596_107749712_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107809346
transcript_44319.known	chr5	+	2321	13	FSM	ENSMUSG00000033773.15	ENSMUST00000112651.8	2321	13	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_3	43.4808386916965	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTTTCAGAAGCTGACA	NA	False	NA	26	True	AATAAA	-19	NA	107745561	107809704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_107745727_107746387_107746434_107749596_107749726_107751391_107751491_107751686_107751753_107754770_107754860_107766006_107766043_107767687_107768622_107771567_107771663_107773753_107773835_107780928_107780998_107803022_107803177_107809346
transcript_4432.known	chr10	+	429	2	FSM	ENSMUSG00000112028.2	ENSMUST00000218350.2	429	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGTACTCTGACTCATT	NA	False	NA	NA	False	AATAAA	-16	NA	71037574	71040317	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_71037641_71039954
transcript_44324.known	chr5	-	815	7	FSM	ENSMUSG00000029276.14	ENSMUST00000148505.8	815	7	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	84.0806491147372	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGTACAGCTGATCTAAT	NA	False	NA	NA	False	NA	NA	NA	107745432	107720145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_107720249_107721550_107721789_107723097_107723231_107726316_107726434_107741618_107741745_107744653_107744729_107745409
transcript_44325.known	chr5	+	795	6	FSM	ENSMUSG00000089798.11	ENSMUST00000239050.2	795	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	1.2	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTTGGTTGAATGGTTCC	NA	False	NA	NA	False	ATTAAA	-16	NA	107682576	107696243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_107682675_107686995_107687090_107691785_107691880_107693553_107693723_107694066_107694146_107695982
transcript_44332.known	chr5	+	1408	6	FSM	ENSMUSG00000111375.5	ENSMUST00000162298.4	1408	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	10.3266645147405	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTGTCTGCCAGACTGAT	NA	False	NA	NA	False	NA	NA	NA	107585862	107619505	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_107586012_107593728_107593924_107599854_107600052_107609303_107609422_107618573_107618664_107618846
transcript_44333.nic	chr5	-	1676	5	ISM	ENSMUSG00000011831.17	ENSMUST00000155897.8	2149	8	13929	0	3693	0	3prime_fragment	FALSE	canonical	3	190	junction_3	8.40758586040012	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGCTACTTCTTGCTAAT	NA	False	NA	-7	True	ATTAAA	-12	NA	107943719	107895141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_107896324_107912541_107912638_107936064_107936161_107938227_107938375_107943564
transcript_44334.nnic	chr5	+	925	8	NNC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	3	353	junction_5	2481.0635639103	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTCTGTGTTAAGCTG	NA	False	NA	-2	True	AATAAA	-16	NA	108048387	108055916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051590_108052582_108052761_108055054_108055144_108055762
transcript_44336.known	chr5	+	2045	8	FSM	ENSMUSG00000058558.13	ENSMUST00000082223.13	2045	8	0	0	0	0	multi-exon	FALSE	canonical	3	7026	junction_3	385.215126750691	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTGGCATTCTTAATT	NA	False	NA	24	True	AATAAA	-18	NA	108048367	108056871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108051735_108052582_108052761_108055054_108055144_108055762
transcript_44338.nic	chr5	+	1918	7	NIC	ENSMUSG00000058558.13	novel	2045	8	NA	NA	20	0	intron_retention	FALSE	canonical	3	7026	junction_3	376.251688811271	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTTTCTGTGTTAAGCTG	NA	False	NA	-2	True	AATAAA	-16	NA	108048387	108055916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_108048513_108049735_108049806_108049887_108050004_108051134_108051270_108051531_108052761_108055054_108055144_108055762
transcript_44342.known	chr5	-	2721	5	FSM	ENSMUSG00000029270.11	ENSMUST00000031198.11	2721	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_2	18.0883249639097	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCTTGATCAATATGTTT	NA	False	NA	NA	False	NA	NA	NA	108134951	108055918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_108058083_108059477_108059655_108062211_108062320_108072450_108072586_108134814
transcript_4435.known	chr10	-	899	7	FSM	ENSMUSG00000003923.15	ENSMUST00000121685.8	899	7	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_6	143.827056641726	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTCTCAAAGCCTTAAAGTG	NA	False	NA	NA	False	AAGAAA	-8	NA	71073508	71064341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072745_71072862_71073287
transcript_44358.known	chr5	+	2355	17	FSM	ENSMUSG00000029267.18	ENSMUST00000131291.8	2355	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	685.769446953566	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGAGAGACTTAATTTTT	NA	False	NA	-78	True	CATAAA	-22	NA	108213539	108255029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_108213832_108221172_108221321_108228690_108228708_108228787_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_4436.known	chr10	-	4167	7	FSM	ENSMUSG00000003923.15	ENSMUST00000092430.11	4167	7	0	0	0	0	multi-exon	FALSE	canonical	3	350	junction_5	32.9212022191711	454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTGTTTTTTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	71074110	71061293	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_71064530_71064916_71064974_71069186_71069283_71070694_71070845_71071372_71071444_71072745_71072862_71073669
transcript_44386.nnic	chr5	+	2011	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4989	0	intron_retention	FALSE	canonical	0	0	junction_3	488.414344003707	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAACAAAAAACAG	NA	False	NA	28	True	NA	NA	NA	108208550	108254866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_44387.nnic	chr5	+	2254	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4989	80	intron_retention	FALSE	canonical	0	0	junction_3	488.414344003707	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCATGGTGTTAGATACTTT	NA	False	NA	2	True	ATTAAA	-16	NA	108208550	108255109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_44388.nnic	chr5	+	2426	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4934	0	intron_retention	FALSE	canonical	0	0	junction_3	488.414344003707	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATGTAAAAAAATATATT	NA	False	NA	-26	True	NA	NA	NA	108208605	108255336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_44389.nnic	chr5	+	3131	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4934	-94	intron_retention	FALSE	canonical	0	0	junction_3	488.414344003707	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTAGAGTTGTCTTCTGT	NA	False	NA	9	True	AAAAAG	-16	NA	108208605	108256041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_44390.nnic	chr5	+	4015	15	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4989	0	intron_retention	FALSE	canonical	0	0	junction_3	488.414344003707	94	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCTAATGAGTTTTTCTTC	NA	False	NA	33	True	ATTAAA	-34	NA	108208550	108256870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_44393.known	chr5	+	3330	15	FSM	ENSMUSG00000029267.18	ENSMUST00000143412.8	3330	15	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	498.553709263514	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTAGCTCTTCATTTT	NA	False	NA	104	True	AGTAAA	-14	NA	108213607	108256136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_108213832_108228690_108228890_108229002_108229089_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885_108251992_108252131_108252185_108252291_108252397_108254453
transcript_4440.known	chr10	-	1431	7	FSM	ENSMUSG00000019927.7	ENSMUST00000020085.7	1431	7	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_2	5.39804491356722	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTCTTGACTACTTAATGCA	NA	False	NA	0	True	AATAAA	-18	NA	71121092	71090809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_71091705_71092444_71092539_71094030_71094137_71095571_71095650_71097913_71097946_71098028_71098093_71120930
transcript_44411.nnic	chr5	+	1452	13	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4939	0	intron_retention	FALSE	canonical	0	0	junction_4	669.217494956278	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGGAAAGAAAAAA	NA	False	NA	NA	False	ATTAAA	-38	NA	108208600	108251905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_108208730_108221172_108221321_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885
transcript_44417.nnic	chr5	+	1354	12	NNC	ENSMUSG00000029267.18	novel	718	8	NA	NA	-4989	0	intron_retention	FALSE	canonical	0	0	junction_3	531.849618340491	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGGAAAGAAAAAA	NA	False	NA	NA	False	ATTAAA	-38	NA	108208550	108251905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_108208730_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885
transcript_44420.nic	chr5	+	1503	12	ISM	ENSMUSG00000029267.18	ENSMUST00000081567.11	4060	15	-104	4965	-36	0	5prime_fragment	FALSE	canonical	0	0	junction_3	647.1193255402	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAGGAAAGAAAAAA	NA	False	NA	NA	False	ATTAAA	-38	NA	108213503	108251905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_108213832_108228690_108228890_108229002_108229085_108234864_108234961_108235161_108235263_108235806_108235956_108239926_108240023_108241203_108241273_108241990_108242115_108246984_108247053_108248678_108248850_108251885
transcript_44429.known	chr5	-	3800	4	FSM	ENSMUSG00000063406.12	ENSMUST00000002837.11	3800	4	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_1	14.1656862405839	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATAATTGTTACCTACTCC	NA	False	NA	0	True	AATAAA	-31	NA	108280486	108269492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_108272626_108273766_108273951_108277883_108277982_108280101
transcript_4443.known	chr10	-	1084	3	FSM	ENSMUSG00000037710.9	ENSMUST00000045887.9	1084	3	0	0	0	0	multi-exon	FALSE	canonical	3	1606	junction_1	82	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTGTGGCTCTGTAACGG	1253	False	NA	7	True	AATAAA	-27	NA	71180784	71166309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_71166957_71172043_71172250_71180553
transcript_44432.known	chr5	-	482	3	FSM	ENSMUSG00000063406.12	ENSMUST00000117759.2	482	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	115.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTGCAGCTGTTTTTGT	NA	False	NA	NA	False	NA	NA	NA	108280399	108277332	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_108277419_108277883_108277982_108280101
transcript_44433.known	chr5	+	5336	29	FSM	ENSMUSG00000056531.12	ENSMUST00000047677.9	5336	29	0	0	0	0	multi-exon	FALSE	canonical	2	47	junction_16	11.5130804048336	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAGAAGAAAAATGATAG	1143	False	NA	NA	False	NA	NA	NA	108280779	108381494	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_108280865_108283287_108283431_108283838_108284011_108286779_108286939_108288724_108288832_108296776_108296906_108303624_108303722_108306390_108306513_108309332_108309625_108311513_108311639_108315874_108316030_108319478_108319700_108321616_108321728_108322731_108322864_108328263_108328399_108328679_108328758_108336797_108336915_108339748_108339917_108341566_108341710_108343861_108344026_108345622_108345837_108349190_108349291_108349930_108350048_108354460_108354605_108359959_108360164_108363852_108363991_108368563_108368765_108376445_108376914_108380599
transcript_44441.nic	chr5	+	1169	4	ISM	ENSMUSG00000056531.12	ENSMUST00000047677.9	5336	29	-107	94053	-68	0	5prime_fragment	FALSE	canonical	2	80	junction_2	5.90668171555645	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACAAAAACCCTCCGCAAGA	1036	False	NA	NA	False	NA	NA	NA	108280672	108287441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_108280865_108283287_108283431_108283838_108284011_108286779
transcript_44442.known	chr5	+	3085	3	FSM	ENSMUSG00000029265.5	ENSMUST00000031190.5	3085	3	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_1	9	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTTTTATATTTAATGAT	NA	False	NA	NA	False	AATAAA	-21	NA	108416762	108428392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_108417676_108423434_108423599_108426384
transcript_44443.known	chr5	-	371	4	FSM	ENSMUSG00000050856.17	ENSMUST00000049628.16	371	4	0	0	0	0	multi-exon	FALSE	canonical	3	3979	junction_1	506.673026275877	1140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTCTCTCTTTACTGTTT	5502	False	NA	0	True	AATAAA	-24	NA	108582314	108581109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_108581204_108581596_108581696_108581891_108581947_108582191
transcript_44444.known	chr5	-	563	3	FSM	ENSMUSG00000050856.17	ENSMUST00000123184.2	563	3	0	0	0	0	multi-exon	FALSE	canonical	3	3979	junction_1	613.5	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTCTCTCTTTACTGT	5553	False	NA	-2	True	AATAAA	-22	NA	108582263	108581111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_108581204_108581596_108581696_108581891
transcript_44447.known	chr5	+	7708	11	FSM	ENSMUSG00000033623.14	ENSMUST00000046975.12	7708	11	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_9	9.83666610188635	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGGATTCCTCTGTGT	NA	False	NA	15	True	AATAAA	-21	NA	108609097	108654842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_108609318_108619937_108619978_108620242_108620384_108621654_108621773_108622975_108623073_108626168_108626225_108634005_108634114_108635701_108635791_108643699_108643838_108647492_108647574_108648222
transcript_44449.known	chr5	+	354	1	FSM	ENSMUSG00000060730.9	ENSMUST00000136334.2	354	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCACATTTTTTAAGTA	NA	False	NA	NA	False	NA	NA	NA	108665044	108665398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_108665000_108665400
transcript_44450.known	chr5	-	2189	4	FSM	ENSMUSG00000033615.10	ENSMUST00000046892.10	2189	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	1.4142135623731	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCTATTCCTTCCAAGACT	NA	False	NA	0	True	AATAAA	-19	NA	108697890	108666419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_108668193_108673257_108673434_108696371_108696476_108697754
transcript_44452.known	chr5	-	4453	28	FSM	ENSMUSG00000062234.15	ENSMUST00000046603.15	4453	28	0	0	0	0	multi-exon	FALSE	canonical	3	318	junction_10	27.4864725426801	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCTGGCTTGTAAAGCAC	NA	False	NA	-28	True	ATTAAA	-23	NA	108777605	108717279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_108717823_108718005_108718183_108719254_108719401_108719739_108719953_108724428_108724546_108728772_108728896_108729979_108730151_108730535_108731016_108732097_108732245_108733206_108733401_108739010_108739091_108739515_108739634_108740063_108740259_108744620_108744755_108745726_108745850_108746632_108746782_108747319_108747370_108750709_108750834_108752181_108752267_108754245_108754359_108754747_108754884_108757256_108757347_108761378_108761505_108764774_108764918_108771125_108771241_108772048_108772109_108772895_108772958_108777366
transcript_44454.known	chr5	+	3373	14	FSM	ENSMUSG00000033540.19	ENSMUST00000112563.9	3373	14	0	0	0	0	multi-exon	FALSE	canonical	2	36	junction_11	7.1294040681437	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTGGCCTCCCAAGTCTTC	NA	False	NA	17	True	NA	NA	NA	108816971	108832423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_108817384_108817984_108818126_108827364_108827451_108827569_108827678_108827976_108828073_108828160_108828364_108828436_108828617_108828726_108828944_108829245_108829459_108829537_108829660_108829767_108829894_108829965_108830043_108830918_108831020_108831132
transcript_44456.known	chr5	+	3956	11	FSM	ENSMUSG00000013495.16	ENSMUST00000063272.13	3956	11	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_10	21.559220765139	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGCTTAGCCTTTCTCAG	NA	False	NA	NA	False	NA	NA	NA	108777697	108796648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704
transcript_44458.known	chr5	+	1811	11	FSM	ENSMUSG00000013495.16	ENSMUST00000120327.3	1811	11	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	36.4367945900843	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGCAGTGAAGGGTTTCA	NA	False	NA	21	True	NA	NA	NA	108777874	108794537	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_108777910_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422_108792559_108793704
transcript_44459.nnic	chr5	+	1604	10	NNC	ENSMUSG00000013495.16	novel	3956	11	NA	NA	-30	-14	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_9	42.7172732287393	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTTGCATCTGACACTAC	NA	False	NA	14	True	ATTAAA	-22	NA	108777667	108792968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792270
transcript_44460.nic	chr5	+	1446	10	ISM	ENSMUSG00000013495.16	ENSMUST00000063272.13	3956	11	-30	3686	-30	-20	5prime_fragment	FALSE	canonical	3	99	junction_1	13.0251418797514	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAGATTTTGCATCTGA	NA	False	NA	8	True	ATTAAA	-16	NA	108777667	108792962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422
transcript_44464.nnic	chr5	+	1398	10	NIC	ENSMUSG00000013495.16	novel	3956	11	NA	NA	-18	-20	combination_of_known_splicesites	FALSE	canonical	3	19	junction_1	36.7544403968948	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAGATTTTGCATCTGA	NA	False	NA	8	True	ATTAAA	-16	NA	108777679	108792962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_108777767_108786138_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422
transcript_44465.nic	chr5	+	1560	10	ISM	ENSMUSG00000013495.16	ENSMUST00000120327.3	1811	11	-178	1575	-1	-20	5prime_fragment	FALSE	canonical	3	25	junction_1	34.906223577529	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAGATTTTGCATCTGA	NA	False	NA	8	True	ATTAAA	-16	NA	108777696	108792962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_108777910_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422
transcript_44467.nic	chr5	+	1501	10	ISM	ENSMUSG00000013495.16	ENSMUST00000078323.13	2374	11	-148	2167	22	-20	5prime_fragment	FALSE	canonical	1	7	junction_1	40.4612297281127	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTAGATTTTGCATCTGA	NA	False	NA	8	True	ATTAAA	-16	NA	108777719	108792962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_108777910_108786138_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904_108791070_108792033_108792113_108792422
transcript_44470.known	chr5	+	1686	8	FSM	ENSMUSG00000013495.16	ENSMUST00000146207.6	1686	8	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	14.7149791792207	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGACAGTTCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	108777635	108791896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_108777767_108786102_108786357_108786532_108786572_108787337_108787436_108789687_108789740_108789982_108790019_108790561_108790646_108790904
transcript_44472.known	chr5	-	924	12	FSM	ENSMUSG00000055385.13	ENSMUST00000212212.2	924	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.603022689155527	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATCACGGTAGAGTTCACT	NA	False	NA	NA	False	NA	NA	NA	108922848	108877230	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_108877344_108877679_108877844_108879530_108879604_108893526_108893591_108895280_108895324_108897108_108897161_108897262_108897316_108903689_108903749_108904928_108904986_108907876_108907952_108918416_108918479_108922739
transcript_44482.nnic	chr5	-	837	4	Genic_Genomic	ENSMUSG00000106028.2	novel	489	6	NA	NA	625	1621	multi-exon	FALSE	canonical	3	31	junction_2	12.2292908852294	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCCCGGGACACGCAGTA	NA	False	NA	NA	False	AATAAA	-19	NA	109701397	109698136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr5_-_109698395_109699328_109699371_109700490_109700560_109700929
transcript_44483.nnic	chr5	-	541	4	Genic_Genomic	ENSMUSG00000106028.2	novel	489	6	NA	NA	905	1621	multi-exon	FALSE	canonical	3	5	junction_2	24.2624538467705	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCCCGGGACACGCAGTA	NA	False	NA	NA	False	AATAAA	-19	NA	109701117	109698136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr5_-_109698395_109699328_109699371_109700506_109700560_109700929
transcript_44486.known	chr5	-	1323	8	FSM	ENSMUSG00000033467.13	ENSMUST00000044579.12	1323	8	0	0	0	0	multi-exon	FALSE	canonical	1	25	junction_7	229.794229159703	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATGCGGCCAGCCATCAT	NA	False	NA	-11	True	NA	NA	NA	109706859	109702578	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705481_109706670
transcript_44488.known	chr5	-	1405	8	FSM	ENSMUSG00000033467.13	ENSMUST00000200284.5	1405	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	232.416937104552	234	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109706802	109702574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285_109704429_109704866_109705034_109705383_109705616_109706670
transcript_44490.nic	chr5	-	1204	5	ISM	ENSMUSG00000033467.13	ENSMUST00000200284.5	1405	8	2044	0	-419	0	3prime_fragment	FALSE	canonical	1	50	junction_4	239.958720408324	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGGCCAGCCATCATTAAT	NA	False	NA	-7	True	NA	NA	NA	109704758	109702574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_109702937_109703138_109703224_109703372_109703494_109703884_109704048_109704285
transcript_44491.known	chr5	-	812	5	FSM	ENSMUSG00000033467.13	ENSMUST00000198960.2	812	5	0	0	0	0	multi-exon	FALSE	canonical	1	13	junction_3	269.602021505774	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTAATGCGGCCAGCCATC	NA	False	NA	-13	True	NA	NA	NA	109704339	109702580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_109702937_109703138_109703224_109703372_109703527_109703884_109704048_109704285
transcript_44497.known	chr5	-	3341	4	FSM	ENSMUSG00000072763.3	ENSMUST00000092720.4	3341	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	21.5148527508066	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCCATGGTCATGGTATC	6131	False	NA	-3	True	NA	NA	NA	109838907	109822410	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_109825258_109826379_109826441_109826628_109826756_109838601
transcript_44498.known	chr5	-	599	3	FSM	ENSMUSG00000072762.10	ENSMUST00000100937.4	599	3	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_2	15.5	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTTGATTAAATTCTCA	7657	False	NA	NA	False	NA	NA	NA	109899752	109886696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_109886877_109887064_109887192_109899460
transcript_4450.known	chr10	+	2676	8	FSM	ENSMUSG00000019923.15	ENSMUST00000105431.8	2676	8	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_7	390.63955932051	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTTACGTGTTTAGTTG	NA	False	NA	NA	False	TATAAA	-32	NA	72490726	72505621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72503730
transcript_44503.nnic	chr5	+	2221	6	NNC	ENSMUSG00000090015.9	novel	2417	4	NA	NA	248	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	79.9714949216282	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGCTATC	NA	False	NA	NA	False	NA	NA	NA	110071513	110091802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_110071633_110076627_110076764_110088291_110088419_110088605_110088667_110089940_110090072_110090155
transcript_44505.known	chr5	+	2417	4	FSM	ENSMUSG00000090015.9	ENSMUST00000112544.8	2417	4	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	50.6315667894601	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGCTATC	NA	False	NA	NA	False	NA	NA	NA	110071265	110091802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_110071633_110088291_110088419_110088605_110088667_110089940
transcript_44506.known	chr5	-	589	2	FSM	ENSMUSG00000097863.2	ENSMUST00000181488.2	589	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATCCAACCGTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	110144264	110143376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_110143686_110143984
transcript_44508.known	chr5	+	868	5	FSM	ENSMUSG00000066613.15	ENSMUST00000125213.8	868	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	94.3514043350707	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGTAGGTCAGAATGATCT	8381	False	NA	NA	False	NA	NA	NA	110144397	110156975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_110144500_110151218_110151319_110154809_110154937_110155121_110155183_110156497
transcript_44509.known	chr5	+	749	4	FSM	ENSMUSG00000066613.15	ENSMUST00000143639.8	749	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	90.6421535489973	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCCTTTGTAGGTCAGAA	8391	False	NA	NA	False	NA	NA	NA	110144407	110156969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_110144497_110154809_110154937_110155121_110155183_110156497
transcript_4451.known	chr10	+	1138	8	FSM	ENSMUSG00000019923.15	ENSMUST00000160337.2	1138	8	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_7	327.562862014955	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGTTGATGTTGTTGT	NA	False	NA	13	True	ATTAAA	-14	NA	72490727	72504997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72504643
transcript_44511.known	chr5	+	451	3	FSM	ENSMUSG00000066613.15	ENSMUST00000099484.9	451	3	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	18.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGCCAGGTGTCTGATT	8371	False	NA	NA	False	NA	NA	NA	110144387	110155333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_110144500_110154809_110154937_110155121
transcript_44512.known	chr5	-	3523	4	FSM	ENSMUSG00000109771.2	ENSMUST00000210052.2	3523	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	10.7082522694727	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCAAAGTGTTCCTTTTTC	NA	False	NA	-3	True	AATAAA	-14	NA	110242286	110224001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_110227247_110228349_110228411_110228603_110228731_110242196
transcript_44515.nic	chr5	-	1387	10	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	76.178315828516	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110255322	110251840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255210
transcript_44516.nic	chr5	-	1464	10	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_9	76.178315828516	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110255566	110251840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255377
transcript_44517.known	chr5	-	1617	10	FSM	ENSMUSG00000033434.16	ENSMUST00000077220.14	1617	10	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_7	48.631900316511	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110256063	110251840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110254735_110254807_110254925_110255064_110255721
transcript_4452.known	chr10	+	1834	8	FSM	ENSMUSG00000019923.15	ENSMUST00000020081.11	1834	8	0	0	0	0	multi-exon	FALSE	canonical	3	928	junction_7	94.1772102940808	683	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTCCTTGTTGCATT	NA	False	NA	10	True	AATAAA	-23	NA	72490676	72510796	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_72490810_72491814_72491906_72492069_72492194_72492361_72492529_72492648_72492706_72492877_72493018_72493097_72493221_72509797
transcript_44525.nic	chr5	-	1473	9	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_8	72.9845874140561	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110255322	110251840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254807_110254925_110255064_110255210
transcript_44527.nic	chr5	-	1844	9	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	-141	0	combination_of_known_junctions	FALSE	canonical	3	150	junction_8	32.0497659897853	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110256204	110251840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254807_110254925_110255064_110255721
transcript_44531.nnic	chr5	-	1433	8	NIC	ENSMUSG00000033434.16	novel	1617	10	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	2	3	junction_7	80.7902297588625	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCTGGTTTTGTATAGGT	NA	False	NA	-4	True	ATTAAA	-28	NA	110256088	110251840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_110252035_110252133_110252287_110252375_110252525_110252755_110252965_110253064_110253224_110254131_110254203_110254518_110254650_110255721
transcript_44539.known	chr5	-	928	4	FSM	ENSMUSG00000033434.16	ENSMUST00000138507.8	928	4	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_1	9.84321537348893	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCGGCCTGGTTTTGTATA	NA	False	NA	-7	True	ATTAAA	-25	NA	110253201	110251843	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_110252035_110252133_110252525_110252755_110252965_110253064
transcript_44540.known	chr5	+	3158	5	FSM	ENSMUSG00000023284.16	ENSMUST00000112528.8	3158	5	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_1	12.7744862910412	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTGTATTTGTGAAGATGT	1949	False	NA	NA	False	NA	NA	NA	110257957	110277660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_110258184_110259762_110259933_110271625_110271747_110272218_110272312_110275112
transcript_44541.known	chr5	+	748	5	FSM	ENSMUSG00000023284.16	ENSMUST00000147631.8	748	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	18.0052075800308	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTCCTTTAAATTTTT	2208	False	NA	NA	False	NA	NA	NA	110258216	110275284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_110258409_110259762_110259933_110271625_110271747_110272218_110272312_110275112
transcript_44545.known	chr5	+	3201	19	FSM	ENSMUSG00000014668.16	ENSMUST00000198066.5	3201	19	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	86.3223931292197	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTTGTGTTGTACTCCTG	NA	False	NA	19	True	AATAAA	-19	NA	110283743	110319835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_110283801_110283916_110284061_110287982_110288056_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306664_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
transcript_44546.known	chr5	+	3146	18	FSM	ENSMUSG00000014668.16	ENSMUST00000014812.13	3146	18	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_11	67.7699140155478	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTGTACTCCTGTGC	NA	False	NA	22	True	AATAAA	-22	NA	110283725	110319838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392_110299553_110300201_110300357_110300983_110301147_110302702_110302849_110306667_110306785_110308023_110308108_110310576_110310648_110311871_110311960_110315989_110316098_110317007_110317081_110318727
transcript_44550.nic	chr5	+	1137	8	ISM	ENSMUSG00000014668.16	ENSMUST00000197010.5	2135	16	-11	16619	0	5235	5prime_fragment	FALSE	canonical	3	248	junction_2	41.954786158824	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGCGTCTGCTCAGGTT	NA	False	NA	NA	False	AATAAA	-21	NA	110283714	110299648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_110283801_110283916_110284061_110288219_110288320_110291416_110291527_110292456_110292517_110292637_110292854_110294335_110294501_110299392
transcript_44556.known	chr5	-	2044	6	FSM	ENSMUSG00000029500.17	ENSMUST00000059229.16	2044	6	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_2	111.169420255752	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTATTTGTTTTAAAGGG	NA	False	NA	-20	True	AATAAA	-18	NA	110417753	110407020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_110408304_110413377_110413509_110413605_110413695_110413776_110413903_110414952_110415132_110417517
transcript_44557.known	chr5	-	2098	6	FSM	ENSMUSG00000029500.17	ENSMUST00000112505.9	2098	6	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_2	153.77594090104	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAGTGTTTAGAAACCCTTT	NA	False	NA	5	True	AATAAA	-43	NA	110417779	110406995	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_110408304_110413377_110413512_110413605_110413695_110413776_110413903_110414952_110415132_110417517
transcript_44561.known	chr5	-	1041	5	FSM	ENSMUSG00000029499.12	ENSMUST00000031472.12	1041	5	0	0	0	0	multi-exon	FALSE	canonical	3	476	junction_4	29.6004645233821	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTTTCTCAGCACAGTT	NA	False	NA	4	True	AATAAA	-28	NA	110434052	110422147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_110422495_110425520_110425641_110429062_110429226_110431511_110431620_110433749
transcript_44563.nnic	chr5	-	1095	5	NNC	ENSMUSG00000029499.12	novel	1041	5	NA	NA	-45	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_3	204.212511859582	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTAATGGGTGTGGTT	NA	False	NA	-9	True	AATAAA	-15	NA	110434097	110422160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_110422495_110425520_110425641_110429062_110429248_110431511_110431620_110433749
transcript_44564.known	chr5	-	700	4	FSM	ENSMUSG00000029499.12	ENSMUST00000155266.2	700	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	226.6686274425	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTAATGGGTGTGGTT	NA	False	NA	-9	True	AATAAA	-15	NA	110433887	110422160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_110422495_110425520_110425641_110431511_110431620_110433749
transcript_44565.known	chr5	-	466	2	FSM	ENSMUSG00000029499.12	ENSMUST00000126882.2	466	2	0	0	0	0	multi-exon	FALSE	canonical	3	476	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTTTGATTCCCAGCTCCC	NA	False	NA	NA	False	NA	NA	NA	110433985	110431389	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_110431620_110433749
transcript_44567.known	chr5	+	747	6	FSM	ENSMUSG00000007080.15	ENSMUST00000112482.2	747	6	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_5	26.0967430918113	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGTGTTCTGTTTTGTGC	NA	False	NA	9	True	AATAAA	-15	NA	110434206	110439101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_110434316_110437098_110437241_110437647_110437729_110438091_110438137_110438270_110438364_110438824
transcript_44568.known	chr5	-	1895	11	FSM	ENSMUSG00000029503.17	ENSMUST00000058016.16	1895	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	1.9723082923316	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTCTCAATTCTTTC	NA	False	NA	NA	False	AATAAA	-13	NA	110490842	110487678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_110488449_110488533_110488600_110488721_110488816_110488966_110489098_110489416_110489556_110489639_110489721_110489870_110489968_110490043_110490120_110490198_110490271_110490365_110490538_110490645
transcript_44569.known	chr5	+	692	4	FSM	ENSMUSG00000072754.10	ENSMUST00000100924.5	692	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	4.71404520791032	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTCCAGTCCATGTTTT	NA	False	NA	NA	False	AATAAA	-20	NA	110501961	110503960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_110502160_110502356_110502483_110502590_110502717_110503718
transcript_44571.known	chr5	-	2075	15	FSM	ENSMUSG00000033294.12	ENSMUST00000042147.6	2075	15	0	0	0	0	multi-exon	FALSE	canonical	3	589	junction_9	55.5126847059778	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTGGCTAAATGTTTTT	8841	False	NA	NA	False	NA	NA	NA	110801283	110796283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_110796850_110796931_110797046_110797197_110797281_110797398_110797560_110797669_110797781_110797937_110797999_110798200_110798313_110798399_110798451_110798810_110798846_110798977_110799078_110799177_110799328_110799544_110799653_110800178_110800286_110800876_110800998_110801088
transcript_44572.known	chr5	+	4846	15	FSM	ENSMUSG00000029504.6	ENSMUST00000031478.6	4846	15	0	0	0	0	multi-exon	TRUE	canonical	3	94	junction_7	18.2382195693885	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATTTTACCCTGTGCTC	NA	False	NA	NA	False	NA	NA	NA	110801316	110808362	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_110801655_110801743_110801878_110802333_110802485_110802734_110802881_110802957_110803030_110803172_110803280_110803430_110803540_110803625_110803772_110803905_110804099_110804196_110804313_110804390_110804508_110804681_110804784_110804953_110805018_110805116_110805252_110805446
transcript_44576.known	chr5	-	1868	7	FSM	ENSMUSG00000029507.17	ENSMUST00000086643.12	1868	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_4	212.004454879818	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110928462	110921532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110924419_110924474_110925479_110925618_110927552_110927764_110928105
transcript_44577.nic	chr5	-	1596	7	NIC	ENSMUSG00000029507.17	novel	1868	7	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_4	232.058481613771	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGCCTATTTTCCTT	NA	False	NA	0	True	ATTAAA	-21	NA	110928513	110921533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_110921846_110922387_110923080_110923401_110923505_110924419_110924474_110925479_110925618_110927552_110927764_110928427
transcript_44578.known	chr5	-	1814	6	FSM	ENSMUSG00000029507.17	ENSMUST00000031483.15	1814	6	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_5	100.055184773204	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGCCTATTTTCCTTT	NA	False	NA	1	True	ATTAAA	-22	NA	110928462	110921532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928105
transcript_44579.known	chr5	-	1510	6	FSM	ENSMUSG00000029507.17	ENSMUST00000170468.8	1510	6	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	177.715052823333	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGCCTATTTTCCTT	NA	False	NA	0	True	ATTAAA	-21	NA	110928481	110921533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928427
transcript_44580.nnic	chr5	-	1512	6	NNC	ENSMUSG00000029507.17	novel	1510	6	NA	NA	16	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_5	205.782020594609	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGCCTATTTTCCTT	NA	False	NA	0	True	ATTAAA	-21	NA	110928509	110921533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_110921846_110922387_110923080_110923401_110923505_110925479_110925618_110927552_110927764_110928453
transcript_44581.nic	chr5	-	1697	5	NIC	ENSMUSG00000029507.17	novel	1814	6	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_3	214.321020900891	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTTTGCCTATTTTCCTT	NA	False	NA	0	True	ATTAAA	-21	NA	110928484	110921533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_110921846_110922387_110923080_110923401_110923505_110927552_110927764_110928105
transcript_44583.known	chr5	-	5213	28	FSM	ENSMUSG00000029512.12	ENSMUST00000031490.11	5213	28	0	0	0	0	multi-exon	TRUE	canonical	3	530	junction_12	186.450389110485	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGTGTCAATTTCATCC	NA	False	NA	-2	True	AATAAA	-15	NA	110957963	110932353	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_110934094_110934165_110934302_110934949_110935108_110935439_110935559_110935638_110935812_110935975_110936167_110936594_110936739_110936813_110936924_110937207_110937402_110938077_110938347_110938715_110938803_110938917_110939064_110939466_110939593_110939967_110940058_110940262_110940324_110940831_110940980_110941680_110941770_110942058_110942110_110942450_110942534_110942612_110942672_110943597_110943700_110944021_110944096_110944192_110944367_110946747_110946785_110946989_110947023_110956870_110956913_110956992_110957086_110957479
transcript_44585.known	chr5	-	804	6	FSM	ENSMUSG00000043510.13	ENSMUST00000056937.12	804	6	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_3	42.8691030930203	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTAATTGGAAATAGATAT	NA	False	NA	3	True	AATAAA	-24	NA	110987643	110976935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_110977078_110978801_110978850_110982520_110982666_110983845_110983936_110984172_110984270_110987361
transcript_44588.nic	chr5	-	615	3	ISM	ENSMUSG00000043510.13	ENSMUST00000056937.12	804	6	-18	6782	-18	-6771	5prime_fragment	FALSE	canonical	3	372	junction_2	33.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGTTCTTTGTAAATCC	NA	False	NA	NA	False	TTTAAA	-18	NA	110987661	110983717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_110983936_110984172_110984270_110987361
transcript_44593.nic	chr5	+	2436	16	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	67.6591457232502	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTTGTGGCTTTTC	9169	False	NA	31	True	AAAACA	-7	NA	110987835	111022011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
transcript_44597.known	chr5	+	2276	15	FSM	ENSMUSG00000029521.8	ENSMUST00000066160.3	2276	15	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_1	48.9833895211386	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTTGTGGCTTTTC	9199	False	NA	31	True	AAAACA	-7	NA	110987865	111022011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111014803_111014920_111015873_111015960_111019892_111019974_111021345
transcript_446.nnic	chr1	+	1094	6	NNC	ENSMUSG00000025934.16	novel	1457	7	NA	NA	3261	192	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	18.4867520132661	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGAGTATTCGAACATT	NA	False	NA	14	True	AATAAA	-20	NA	21327005	21335437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_21327270_21327554_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
transcript_44604.nnic	chr5	+	2202	14	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	-21	0	combination_of_known_splicesites	TRUE	canonical	3	52	junction_11	68.5178679240099	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTAGTTTGTTGTGGCTTTTC	9157	False	NA	31	True	AAAACA	-7	NA	110987823	111022011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461_110997553_111003590_111003700_111006239_111006294_111008728_111008791_111011123_111011224_111013387_111013475_111014128_111014293_111015873_111015960_111019892_111019974_111021345
transcript_44608.nic	chr5	+	1093	6	NIC	ENSMUSG00000029521.8	novel	2276	15	NA	NA	-9	-25	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	110.44202098839	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGTGTTGGGATAAGCG	9169	False	NA	NA	False	AATAAA	-18	NA	110987835	110997734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495_110996644_110997461
transcript_44609.nic	chr5	+	837	5	ISM	ENSMUSG00000029521.8	ENSMUST00000066160.3	2276	15	-42	24415	-21	-163	5prime_fragment	FALSE	canonical	3	120	junction_1	80.3632378640881	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTATTCTCATGGGTT	9157	False	NA	NA	False	AATAAA	-17	NA	110987823	110997596	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461
transcript_44610.nic	chr5	+	975	5	ISM	ENSMUSG00000029521.8	ENSMUST00000066160.3	2276	15	-42	24277	-21	-25	5prime_fragment	FALSE	canonical	3	120	junction_1	80.3632378640881	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAGTGTTGGGATAAGCG	9157	False	NA	NA	False	AATAAA	-18	NA	110987823	110997734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_110987915_110989071_110989410_110996254_110996380_110996495_110996644_110997461
transcript_44611.nic	chr5	+	839	5	NIC	ENSMUSG00000029521.8	novel	2190	14	NA	NA	-9	-1097	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	123.00076219276	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTTTTCTTAACTTCCT	9169	False	NA	NA	False	AATAAA	-21	NA	110987835	110996662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_110987915_110988276_110988407_110989071_110989410_110996254_110996380_110996495
transcript_44620.known	chr5	+	2761	12	FSM	ENSMUSG00000050017.12	ENSMUST00000086635.9	2761	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	273.518821024341	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	16	True	AATAAA	-17	NA	111478628	111536225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494441_111494985_111494994_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111533385_111533471_111534368
transcript_44624.known	chr5	+	2632	11	FSM	ENSMUSG00000050017.12	ENSMUST00000200298.2	2632	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	361.683231571495	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGTGTGCTCCTGTGGT	NA	False	NA	16	True	AATAAA	-17	NA	111478672	111536225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_111478700_111483360_111483392_111486148_111486295_111494348_111494441_111494985_111494994_111495646_111495722_111497356_111497441_111519177_111519256_111528057_111528169_111530853_111530977_111534368
transcript_44629.known	chr5	-	729	5	FSM	ENSMUSG00000085271.8	ENSMUST00000129065.8	729	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.54950975679639	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGGCCTTCTTACCATTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	111909591	111882168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_111882496_111886992_111887080_111887701_111887776_111895707_111895859_111909501
transcript_4463.known	chr10	-	3500	6	FSM	ENSMUSG00000033416.16	ENSMUST00000039796.14	3500	6	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	9.3893556754444	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAGAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	75353215	75342116	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_75344804_75345425_75345668_75345865_75345958_75346954_75347121_75347905_75347991_75352987
transcript_44630.nnic	chr5	-	1899	5	NNC	ENSMUSG00000085271.8	novel	906	5	NA	NA	7	604	intron_retention	FALSE	canonical	2	8	junction_4	1.08972473588517	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCATTTTTTCCTCATGG	NA	False	NA	NA	False	AATAGA	-12	NA	111909584	111881545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_111883050_111886992_111887080_111887701_111887776_111895707_111895859_111909501
transcript_44633.known	chr5	+	1813	7	FSM	ENSMUSG00000029344.16	ENSMUST00000239473.2	1813	7	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_1	59.7847992571876	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112424572	112463221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_112424638_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
transcript_44635.nic	chr5	+	1863	7	NIC	ENSMUSG00000029344.16	novel	442	5	NA	NA	-64	0	combination_of_known_junctions	FALSE	canonical	3	101	junction_1	87.1615677284942	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112436563	112463221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_112436679_112451765_112451838_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
transcript_44636.nic	chr5	+	1940	7	NIC	ENSMUSG00000029344.16	novel	442	5	NA	NA	-64	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	139.333433014318	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112436563	112463221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_112436679_112451765_112451838_112455431_112456421_112457554_112457754_112459549_112459601_112461107_112461157_112462756
transcript_44637.nic	chr5	+	924	6	NIC	ENSMUSG00000029344.16	novel	1813	7	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	115.943779479539	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112424549	112463221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_112424638_112451765_112451838_112457554_112457754_112459549_112459601_112461107_112461157_112462756
transcript_44638.known	chr5	+	1741	6	FSM	ENSMUSG00000029344.16	ENSMUST00000071455.7	1741	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	131.441241625298	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112424572	112463221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_112424638_112455431_112456344_112457554_112457754_112459549_112459601_112461107_112461157_112462756
transcript_44639.nic	chr5	+	951	6	NIC	ENSMUSG00000029344.16	novel	442	5	NA	NA	-64	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_2	128.790372310977	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGAGTGAGTAGCTTTCT	NA	False	NA	21	True	AATAAA	-31	NA	112436563	112463221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_112436679_112451765_112451838_112457554_112457754_112459549_112459601_112461107_112461157_112462756
transcript_4464.nic	chr10	-	2983	6	NIC	ENSMUSG00000033416.16	novel	2843	6	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_5	28.7026131214564	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACAGTGGTAGCACCCTTT	NA	False	NA	-13	True	AATAAA	-11	NA	75353827	75342658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_75344804_75345425_75345668_75345865_75345958_75346954_75347121_75347905_75347991_75353574
transcript_44641.known	chr5	+	3560	14	FSM	ENSMUSG00000029345.14	ENSMUST00000031288.14	3560	14	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_4	15.3503464486856	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGAAGTATATGGGTGTT	NA	False	NA	14	True	AATAAA	-16	NA	112474223	112485939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_112474340_112475350_112475537_112475827_112476049_112477231_112477386_112477612_112477770_112478956_112479085_112479733_112479887_112480829_112481358_112481440_112481548_112482182_112482352_112482725_112482970_112483438_112483582_112483880_112484047_112484851
transcript_44644.known	chr5	-	871	5	FSM	ENSMUSG00000029346.13	ENSMUST00000155756.8	871	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	40.1154583670684	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTTTACAGTGCTGT	NA	False	NA	-7	True	AATAGA	-14	NA	112487888	112485257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_112485608_112485867_112485914_112486183_112486434_112487584_112487684_112487762
transcript_44647.known	chr5	+	2836	14	FSM	ENSMUSG00000042328.14	ENSMUST00000035279.4	2836	14	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	21.6682900317355	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTGATCAGCTAGCA	NA	False	NA	9	True	AATAAA	-15	NA	112490960	112526280	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_112491030_112492406_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
transcript_44648.known	chr5	+	3345	14	FSM	ENSMUSG00000042328.14	ENSMUST00000112359.9	3345	14	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_1	19.6098031274724	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGAGTGATCAGCTAGCA	NA	False	NA	9	True	AATAAA	-15	NA	112490948	112526280	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_112491030_112491909_112492915_112494459_112494551_112497150_112497295_112510974_112511083_112511411_112511529_112512386_112512482_112514764_112514838_112516801_112516839_112517320_112517418_112517811_112518611_112522745_112522879_112523218_112523328_112525824
transcript_4465.known	chr10	+	3042	10	FSM	ENSMUSG00000033427.15	ENSMUST00000039925.8	3042	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.993807989999907	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCTCTTGGTGTCTCTC	1579	False	NA	NA	False	NA	NA	NA	75242744	75277513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_75242994_75248600_75248773_75250823_75250912_75260326_75260422_75264014_75264177_75265795_75265966_75271979_75272062_75272709_75272753_75273890_75274046_75275687
transcript_44650.known	chr5	-	6533	21	FSM	ENSMUSG00000042249.12	ENSMUST00000065167.9	6533	21	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_7	10.5322124931089	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGGCTTGAGGCTGACATC	539	False	NA	-4	True	AATAAA	-18	NA	113163380	113058347	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_113062941_113063915_113064030_113066691_113066829_113067873_113068037_113071814_113071911_113073261_113073329_113076521_113076623_113077538_113077606_113085574_113085683_113089498_113089594_113092783_113092915_113094452_113094532_113101691_113101792_113103029_113103122_113105180_113105233_113109452_113109515_113114777_113114853_113117033_113117136_113121372_113121447_113133630_113133708_113163232
transcript_44651.nic	chr5	-	736	4	ISM	ENSMUSG00000029352.15	ENSMUST00000076069.13	816	5	681	0	405	0	3prime_fragment	FALSE	canonical	3	12	junction_2	4.78423336480244	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGTCTGTGTCACTTCC	NA	False	NA	NA	False	AATAAA	-17	NA	113227852	113223704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_113223938_113225400_113225544_113226248_113226382_113227625
transcript_44652.known	chr5	-	2274	18	FSM	ENSMUSG00000042216.14	ENSMUST00000112325.8	2274	18	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_17	27.6471839796917	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTGTCTCCTTGGAACC	NA	False	NA	NA	False	AGTAAA	-17	NA	113458605	113413539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_113413814_113414152_113414336_113416566_113416696_113421444_113421591_113422157_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192_113428261_113430457_113430583_113432845_113432978_113433144_113433291_113433492_113433561_113434640_113434794_113435090_113435254_113436689_113436766_113458413_113458458_113458539
transcript_44655.nic	chr5	-	1508	9	ISM	ENSMUSG00000042216.14	ENSMUST00000147856.8	3012	13	0	8200	0	0	5prime_fragment	FALSE	canonical	3	54	junction_1	14.2280532751322	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCTGTCTCCTTGGAACC	NA	False	NA	NA	False	AGTAAA	-17	NA	113428467	113413539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_113413814_113414152_113414336_113416566_113416696_113421444_113421591_113422157_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192
transcript_44657.known	chr5	-	1102	5	FSM	ENSMUSG00000042216.14	ENSMUST00000112324.2	1102	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_3	10.6389614154766	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGAGAGTGGTGTCTGTCC	NA	False	NA	NA	False	ATTAAA	-18	NA	113428453	113421817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_113422223_113423899_113424039_113426998_113427132_113427322_113427487_113428192
transcript_44658.known	chr5	+	4302	9	FSM	ENSMUSG00000063430.10	ENSMUST00000094452.4	4302	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	15.7276627316331	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCAGTTGTGTATGGCAT	NA	False	NA	14	True	ATTAAA	-24	NA	113638312	113727786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_113638807_113688483_113689396_113696409_113696525_113698961_113699147_113708697_113708820_113710299_113710475_113712079_113712245_113715323_113715525_113725853
transcript_44659.known	chr5	+	3133	3	FSM	ENSMUSG00000053334.7	ENSMUST00000065698.7	3133	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	4.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACATTGCGTTGTCTCA	715	False	NA	NA	False	AATAAA	-11	NA	113873863	113878661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_113874111_113874881_113875234_113876127
transcript_44660.known	chr5	-	4447	19	FSM	ENSMUSG00000018974.8	ENSMUST00000019118.8	4447	19	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_17	27.7084133944819	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGTGCATTGCAGCT	NA	False	NA	-16	True	ATTAAA	-16	NA	113910571	113880506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_113881365_113882604_113882796_113883107_113883261_113883640_113884093_113884684_113884854_113885983_113886061_113886822_113886936_113889263_113889374_113890274_113890334_113890451_113890530_113891658_113891767_113892293_113892433_113893430_113893587_113896199_113896325_113897281_113897334_113899155_113899341_113900889_113900995_113902133_113902261_113909381
transcript_44664.nnic	chr5	-	1780	3	NNC	ENSMUSG00000048163.14	novel	1855	2	NA	NA	11	4	intron_retention	TRUE	non_canonical	0	0	junction_1	7	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGCTGAGTCCTTCATGT	6289	False	NA	NA	False	AATAAA	-16	NA	113968551	113956611	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_113957728_113957787_113958310_113968409
transcript_44665.nnic	chr5	-	1809	3	NNC	ENSMUSG00000048163.14	novel	1855	2	NA	NA	11	3	intron_retention	TRUE	non_canonical	0	0	junction_1	7	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGATAGCTGAGTCCTTCATG	6289	False	NA	NA	False	AATAAA	-15	NA	113968551	113956612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_113957698_113957727_113958310_113968409
transcript_44667.known	chr5	-	3491	11	FSM	ENSMUSG00000004530.13	ENSMUST00000004646.13	3491	11	0	0	0	0	multi-exon	FALSE	canonical	3	905	junction_1	46.3810306051946	160	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTGTGCTGTGCTTCTTT	NA	False	NA	NA	False	GATAAA	-15	NA	114046819	113980496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_113982530_113983221_113983468_113984206_113984265_113985494_113985641_113986587_113986693_113987589_113987710_113988711_113988894_113990231_113990362_114003699_114003823_114020018_114020219_114046671
transcript_4467.known	chr10	+	442	4	FSM	ENSMUSG00000020180.11	ENSMUST00000220229.2	442	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	1763.59254553501	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTTGATAAACTGTTAAG	1894	False	NA	-15	True	NA	NA	NA	75353876	75371252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_75353960_75355147_75355295_75368010_75368065_75371094
transcript_44675.nnic	chr5	-	1448	9	NNC	ENSMUSG00000042121.17	novel	3164	14	NA	NA	-6111	6139	at_least_one_novel_splicesite	FALSE	canonical	3	116	junction_8	98.9980271268069	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAACAAAAACAAAACAT	NA	False	NA	NA	False	AAGAAA	-14	NA	114110928	114093314	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_114093908_114095444_114095539_114096774_114096970_114098660_114098727_114099410_114099480_114104240_114104363_114104769_114104835_114108431_114108536_114110788
transcript_44677.known	chr5	-	3379	16	FSM	ENSMUSG00000042078.15	ENSMUST00000058472.13	3379	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	7.27552976307109	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAGTCGACTAACTTGTT	NA	False	NA	53	True	TTTAAA	-39	NA	114229631	114164970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_114166526_114168157_114168248_114169621_114169704_114170769_114170882_114173213_114173322_114176596_114176674_114179884_114179959_114180248_114180378_114180866_114180993_114183628_114183693_114192537_114192663_114198118_114198191_114201085_114201185_114202928_114203015_114203586_114203748_114229212
transcript_44678.known	chr5	+	4604	13	FSM	ENSMUSG00000029592.12	ENSMUST00000031588.12	4604	13	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	7.25095779113966	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTTCTTTTTTAACAGTG	NA	False	NA	NA	False	NA	NA	NA	114238375	114262781	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_114238577_114240443_114240554_114241704_114241888_114243808_114243913_114249177_114249277_114249929_114249976_114250947_114251043_114257099_114257160_114257623_114257711_114258258_114258340_114258453_114258674_114259092_114259214_114259584
transcript_4469.known	chr10	+	3036	4	FSM	ENSMUSG00000020180.11	ENSMUST00000020397.11	3036	4	0	0	0	0	multi-exon	FALSE	canonical	3	3512	junction_3	116.998575489904	1722	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTGATTATTCCAAGACT	1402	False	NA	NA	False	AATAAA	-17	NA	75353384	75373215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_75353960_75355147_75355295_75368010_75368204_75371094
transcript_44691.known	chr5	-	1073	4	FSM	ENSMUSG00000044339.13	ENSMUST00000053657.13	1073	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	257.69534122465	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	8020	False	NA	-2	True	AATAAA	-22	NA	114266237	114261986	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_114262316_114263592_114263792_114265586_114265831_114265936
transcript_44692.nic	chr5	-	1050	4	NIC	ENSMUSG00000044339.13	novel	1073	4	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_3	238.844905511692	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGGGGGGGTGTGTGCA	7958	False	NA	-2	True	AATAAA	-22	NA	114266299	114261986	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_114262316_114263592_114263792_114265586_114265831_114266021
transcript_44693.known	chr5	-	899	4	FSM	ENSMUSG00000044339.13	ENSMUST00000112279.2	899	4	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_3	133.312498372141	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTGTATTTGGGGGGGG	7978	False	NA	-11	True	AATAAA	-13	NA	114266279	114261995	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_114262316_114263592_114263792_114265586_114265831_114266143
transcript_44697.known	chr5	-	1682	15	FSM	ENSMUSG00000042078.15	ENSMUST00000134790.8	1682	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	7.52546696632339	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTGTTTGACCATGTT	NA	False	NA	NA	False	NA	NA	NA	114203279	114166185	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_114166526_114168157_114168248_114169621_114169704_114170769_114170882_114173213_114173322_114176596_114176674_114179884_114179959_114180248_114180378_114180866_114180993_114183628_114183693_114192537_114192663_114198118_114198191_114201085_114201185_114202928_114203015_114203181
transcript_44698.known	chr5	+	1985	7	FSM	ENSMUSG00000029591.15	ENSMUST00000031587.13	1985	7	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_1	117.255656106172	383	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGCCGACTATTCTTCA	NA	False	NA	23	True	AATAAA	-19	NA	114268446	114277384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_114268687_114269379_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
transcript_44701.known	chr5	+	3099	1	FSM	ENSMUSG00000029591.15	ENSMUST00000200479.2	3099	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACCAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	114270140	114273239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_114270100_114273200
transcript_44702.known	chr5	+	2136	6	FSM	ENSMUSG00000029591.15	ENSMUST00000102584.11	2136	6	0	0	0	0	multi-exon	FALSE	canonical	3	690	junction_3	32.487536071546	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTGTGCCGACTATTCTT	NA	False	NA	21	True	AATAAA	-17	NA	114268986	114277382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_114269575_114270241_114270338_114273924_114274023_114274407_114274497_114275213_114275393_114276296
transcript_44703.nic	chr5	+	1024	4	ISM	ENSMUSG00000042010.17	ENSMUST00000143276.2	6680	41	48469	621	-85	-617	3prime_fragment	FALSE	canonical	3	58	junction_1	12.0369800568452	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCCTAGTGAGTCAGGA	5475	False	NA	NA	False	AATAAA	-20	NA	114386308	114388199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_114386380_114386644_114386816_114386935_114387073_114387554
transcript_44704.known	chr5	+	8788	53	FSM	ENSMUSG00000042010.17	ENSMUST00000102582.8	8788	53	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	14.1468811249028	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTGGCCTTGATTTATT	NA	False	NA	9	True	AATAAA	-19	NA	114284595	114388822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_114284887_114303569_114304202_114322110_114322244_114326391_114326531_114328136_114328247_114328390_114328473_114329215_114329315_114329912_114330023_114330134_114330246_114333284_114333495_114333695_114333867_114334720_114334883_114336237_114336402_114338300_114338452_114338556_114338661_114339959_114340042_114341450_114341597_114342732_114342884_114345296_114345432_114347813_114347961_114348965_114349155_114350711_114350813_114351372_114351462_114351673_114351799_114354661_114354776_114354871_114354986_114355709_114355800_114356922_114357042_114361292_114361431_114361868_114361969_114362049_114362158_114363634_114363692_114363914_114363957_114364737_114364954_114366591_114366748_114367791_114367996_114368775_114368932_114370907_114371031_114371143_114371414_114373513_114373612_114374567_114374689_114376678_114376790_114377752_114377897_114378604_114378726_114379983_114380081_114382546_114382644_114383148_114383285_114383938_114384117_114384491_114384605_114386224_114386380_114386644_114386816_114386935_114387073_114387554
transcript_44707.known	chr5	-	3016	10	FSM	ENSMUSG00000042002.12	ENSMUST00000044790.12	3016	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	3.91893157523298	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTGACTCAGTGTGGA	NA	False	NA	-2	True	AATAAA	-13	NA	114411868	114392224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_114393812_114394619_114395013_114396568_114396777_114397810_114397908_114398410_114398539_114398926_114399047_114399135_114399264_114401069_114401216_114411033_114411123_114411748
transcript_44708.known	chr5	-	1026	7	FSM	ENSMUSG00000001098.16	ENSMUST00000001125.6	1026	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	38.0379927032025	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCCTCCCTCTGCTCCT	NA	False	NA	NA	False	NA	NA	NA	114518544	114503682	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_114503928_114505269_114505466_114506402_114506456_114507001_114507092_114508119_114508290_114512956_114513171_114518486
transcript_4471.nic	chr10	+	2676	15	NIC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-464	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	94.4297600962574	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGGACTTTAGTGTCT	NA	False	NA	27	True	NA	NA	NA	75399517	75422025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_75400093_75400654_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
transcript_44713.known	chr5	-	3020	9	FSM	ENSMUSG00000029575.18	ENSMUST00000031560.14	3020	9	0	0	0	0	multi-exon	TRUE	canonical	3	162	junction_1	19.5604032422647	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTTGTGGCTCATCTCTC	NA	False	NA	2	True	AATAAA	-36	NA	114582121	114569094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_114571420_114573338_114573399_114574539_114574605_114574770_114574869_114575110_114575184_114575878_114575937_114576581_114576676_114580821_114580884_114581936
transcript_44721.known	chr5	-	1277	8	FSM	ENSMUSG00000029575.18	ENSMUST00000123256.3	1277	8	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_4	16.4738506458581	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTCCAGGGAGTCACCAA	NA	False	NA	NA	False	NA	NA	NA	114582053	114572688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_114573399_114574539_114574605_114574770_114574869_114575110_114575184_114575878_114575937_114576581_114576676_114580821_114580884_114581936
transcript_44725.nic	chr5	+	1725	12	NIC	ENSMUSG00000041939.15	novel	1660	11	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_2	45.2173812847221	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAAAGCCTTGGGCCCTG	NA	False	NA	NA	False	AATAAA	-13	NA	114582332	114598645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_114582425_114582712_114582751_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
transcript_44726.known	chr5	+	1602	11	FSM	ENSMUSG00000041939.15	ENSMUST00000112239.9	1602	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	36.3257484437692	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTGGCTCTTGCCCTCTC	NA	False	NA	NA	False	NA	NA	NA	114582346	114598538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588301_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
transcript_44728.known	chr5	+	1660	11	FSM	ENSMUSG00000041939.15	ENSMUST00000043760.15	1660	11	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_10	13.5410487038486	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGGGCCCTGTGGGAAG	NA	False	NA	NA	False	AATAAA	-20	NA	114582366	114598652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940_114590987_114593457_114593549_114593950_114594068_114596955_114597110_114598103
transcript_4473.nnic	chr10	+	2298	15	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-103	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	109.844161410238	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGGACTTTAGTGTCT	NA	False	NA	27	True	NA	NA	NA	75399878	75422025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_75400093_75400671_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
transcript_44730.known	chr5	+	1049	8	FSM	ENSMUSG00000041939.15	ENSMUST00000137167.8	1049	8	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_2	54.8813190773825	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGGCTGTCTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	114582329	114591211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_114582425_114582712_114582751_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940
transcript_44735.nic	chr5	+	1022	7	ISM	ENSMUSG00000041939.15	ENSMUST00000043760.15	1660	11	-48	7441	-11	0	5prime_fragment	FALSE	canonical	3	117	junction_1	10.1063786238637	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGGCTGTCTGTCTGT	NA	False	NA	NA	False	NA	NA	NA	114582318	114591211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_114582425_114583448_114583541_114584219_114584368_114588337_114588483_114588766_114588923_114590425_114590530_114590940
transcript_44738.known	chr5	-	3228	16	FSM	ENSMUSG00000014158.13	ENSMUST00000071968.9	3228	16	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_12	3.23865541373096	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTGAGGGTGAGGTTGGAA	NA	False	NA	NA	False	AATAAA	-20	NA	114796482	114760212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_114760872_114761668_114761791_114763071_114763200_114764804_114765122_114766653_114766721_114766868_114767035_114768010_114768085_114768482_114768576_114768804_114768964_114771195_114771376_114772576_114772876_114773507_114773649_114774370_114774524_114778184_114778358_114782574_114782992_114796402
transcript_44740.known	chr5	-	1762	5	FSM	ENSMUSG00000011884.14	ENSMUST00000012028.14	1762	5	0	0	0	0	multi-exon	TRUE	canonical	3	1353	junction_4	27.6541136180497	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTCTGTGGCGCTTGAT	NA	False	NA	3	True	AATAAA	-29	NA	114829045	114807458	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_114808651_114812114_114812266_114814325_114814460_114815681_114815741_114828819
transcript_44742.known	chr5	+	2882	13	FSM	ENSMUSG00000002486.16	ENSMUST00000094441.11	2882	13	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_2	9.3392838174146	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAGGCTGTCACTGCTGC	NA	False	NA	15	True	AGTAAA	-18	NA	114845820	114860388	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_114846022_114846714_114846900_114847367_114847579_114849313_114849371_114851484_114851554_114852688_114852863_114853613_114853727_114853895_114853963_114855497_114855671_114856439_114856522_114857639_114857826_114858185_114858330_114859168
transcript_44745.known	chr5	-	2984	20	FSM	ENSMUSG00000041890.18	ENSMUST00000086564.11	2984	20	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_12	54.5305322490843	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGATGTCTCCATAATGT	NA	False	NA	-2	True	TATAAA	-14	NA	114911523	114867635	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890392_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
transcript_44746.known	chr5	-	5032	19	FSM	ENSMUSG00000041890.18	ENSMUST00000112185.9	5032	19	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_6	46.75943160951	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTGCCCCCTCTAGTT	NA	False	NA	-3	True	AATAAA	-20	NA	114911556	114865467	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114875408_114875499_114877093_114877343_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
transcript_44749.nic	chr5	-	2662	19	NIC	ENSMUSG00000041890.18	novel	2984	20	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	47	junction_4	58.7622327690158	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTAAAACATTTTCTTAAGA	NA	False	NA	NA	False	NA	NA	NA	114911589	114867930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_114868456_114869052_114869117_114871253_114871443_114871921_114872005_114877093_114877343_114881791_114881942_114883489_114883633_114886244_114886357_114887303_114887402_114887622_114887696_114890339_114890389_114891339_114891386_114899633_114899729_114902407_114902539_114902647_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
transcript_4475.nnic	chr10	+	2169	15	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-86	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	116.89112761149	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGGACTTTAGTGTCT	NA	False	NA	27	True	NA	NA	NA	75399895	75422025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_75399964_75400654_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
transcript_44750.nic	chr5	-	700	5	ISM	ENSMUSG00000041890.18	ENSMUST00000153756.8	2091	12	-33	17223	-33	0	5prime_fragment	FALSE	canonical	3	229	junction_4	20.2036506602149	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGATAGTCCAGGTCT	NA	False	NA	NA	False	ATTAAA	-15	NA	114911589	114902602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_114902735_114904512_114904619_114905156_114905270_114907677_114907812_114911374
transcript_44751.known	chr5	-	1333	2	FSM	ENSMUSG00000072694.9	ENSMUST00000112160.4	1333	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTCTGCTGTTCTGTGC	719	False	NA	0	True	ATTAAA	-23	NA	114952037	114946256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_114947393_114951840
transcript_44752.known	chr5	-	579	2	FSM	ENSMUSG00000072694.9	ENSMUST00000061251.6	579	2	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	0	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTTTTGGCGTCCTTCT	750	False	NA	-3	True	NA	NA	NA	114952006	114950853	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_114951267_114951840
transcript_44753.known	chr5	-	420	2	FSM	ENSMUSG00000072694.9	ENSMUST00000100850.6	420	2	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTGGTTATCTATGCTCA	9616	False	NA	NA	False	NA	NA	NA	114961506	114960499	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_114960787_114961373
transcript_44754.known	chr5	+	2181	6	FSM	ENSMUSG00000041827.16	ENSMUST00000112143.4	2181	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	3.38230690505755	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGGTCCTCATTTGTCAC	7858	False	NA	6	True	NA	NA	NA	115061322	115075974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_115061669_115066081_115066365_115067898_115068063_115070781_115071024_115073979_115074128_115074976
transcript_44756.known	chr5	+	2607	6	FSM	ENSMUSG00000029559.16	ENSMUST00000031538.9	2607	6	0	0	0	0	multi-exon	FALSE	canonical	3	243	junction_3	24.1909073827337	514	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGGGATGGTGGTCCACA	NA	False	NA	NA	False	ATTAAA	-16	NA	115080216	115087842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_115080415_115083844_115083888_115084076_115084176_115084349_115084424_115085221_115085313_115085740
transcript_4476.nnic	chr10	+	2152	15	NNC	ENSMUSG00000006345.11	novel	2167	13	NA	NA	-86	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	120.022531898245	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGGACTTTAGTGTCT	NA	False	NA	27	True	NA	NA	NA	75399895	75422025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_75399964_75400671_75400740_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
transcript_44760.known	chr5	-	294	1	FSM	ENSMUSG00000072692.8	ENSMUST00000124641.2	294	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGATTTCAATCAGTCATAAA	NA	False	NA	-52	True	NA	NA	NA	115241580	115241286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_115241300_115241600
transcript_44762.nnic	chr5	-	1919	11	NNC	ENSMUSG00000029545.14	novel	1870	10	NA	NA	6	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	171.377244697188	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGCCTGTGTCTGTCTT	9780	False	NA	-4	True	AATAAA	-18	NA	115257399	115248357	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_115249066_115249152_115249210_115249377_115249474_115249695_115249834_115249915_115250087_115250298_115250451_115250823_115250936_115251122_115251273_115255623_115255788_115256835_115256891_115257283
transcript_44765.known	chr5	-	1870	10	FSM	ENSMUSG00000029545.14	ENSMUST00000031524.11	1870	10	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_3	13.7822573362984	315	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTGCCTGTGTCTGTCTT	9774	False	NA	-4	True	AATAAA	-18	NA	115257405	115248357	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_115249066_115249152_115249210_115249377_115249474_115249695_115249834_115249915_115250087_115250298_115250451_115250823_115250936_115251122_115251273_115255623_115255788_115257283
transcript_44766.known	chr5	-	3659	5	FSM	ENSMUSG00000046562.6	ENSMUST00000060798.6	3659	5	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_1	7.58287544405155	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCCTCCTGATTGGGCCT	NA	False	NA	10	True	AATAAA	-27	NA	115273034	115260608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_115263560_115265069_115265243_115265360_115265473_115268525_115268640_115272725
transcript_44768.known	chr5	-	5955	5	FSM	ENSMUSG00000048578.12	ENSMUST00000112121.6	5955	5	0	0	0	0	multi-exon	FALSE	canonical	3	1139	junction_2	31.3249102153542	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCGTGTTGAGAGTGAATT	4724	False	NA	-3	True	AATAAA	-16	NA	115296238	115281039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_115286204_115288127_115288186_115288266_115288444_115288874_115289054_115295861
transcript_44771.known	chr5	-	840	7	FSM	ENSMUSG00000029544.17	ENSMUST00000145197.9	840	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	87.9837421850701	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACCCCTCCGCACTGTGAA	10018	False	NA	NA	False	NA	NA	NA	115324115	115307029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115318846_115319031_115324070
transcript_44772.nnic	chr5	-	1132	6	NNC	ENSMUSG00000029544.17	novel	1621	6	NA	NA	-2724	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_5	79.358931444419	67	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	7432	False	NA	-1	True	AATAAA	-20	NA	115327091	115306747	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115326852
transcript_44773.nnic	chr5	-	1124	6	NNC	ENSMUSG00000029544.17	novel	1621	6	NA	NA	-704	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_5	78.9926578866669	57	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGAGGGTGGTCCTTGCTTT	8059	False	NA	-1	True	AATAAA	-20	NA	115333144	115306747	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115332913
transcript_44774.known	chr5	-	1071	7	FSM	ENSMUSG00000029544.17	ENSMUST00000112109.8	1071	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	89.0561620551885	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAAAAAAAAACCGAGAA	7519	False	NA	-26	True	NA	NA	NA	115319481	115306772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_115307208_115310817_115310966_115311173_115311284_115313437_115313582_115314298_115314330_115318850_115319031_115319458
transcript_44776.known	chr5	+	575	4	FSM	ENSMUSG00000060152.15	ENSMUST00000128830.5	575	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	380.536755415587	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGGAATAAACATTCCTAAA	NA	False	NA	-11	True	NA	NA	NA	115376093	115379003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_115376129_115378220_115378371_115378531_115378616_115378697
transcript_44777.known	chr5	+	428	3	FSM	ENSMUSG00000060152.15	ENSMUST00000140083.2	428	3	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_1	450.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAAATGTGCACTTGCCTT	NA	False	NA	11	True	AATAAA	-13	NA	115378399	115379025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_115378416_115378531_115378616_115378697
transcript_44778.known	chr5	+	2037	7	FSM	ENSMUSG00000041733.11	ENSMUST00000040421.11	2037	7	0	0	0	0	multi-exon	FALSE	canonical	3	495	junction_4	23.5442845152137	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCAGATGTCACTTTTTG	NA	False	NA	21	True	AATAAA	-19	NA	115417724	115435031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_115417974_115421624_115421775_115422449_115422672_115428992_115429100_115432885_115432975_115433724_115433837_115433923
transcript_44785.known	chr5	-	2030	3	FSM	ENSMUSG00000009013.6	ENSMUST00000009157.4	2030	3	0	0	0	0	multi-exon	FALSE	canonical	3	3784	junction_1	210.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGCTGGCTCAAAAACAAAAT	NA	False	NA	NA	False	AATAAA	-33	NA	115439058	115435168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_115436893_115438571_115438710_115438890
transcript_44786.known	chr5	-	729	2	FSM	ENSMUSG00000009013.6	ENSMUST00000112090.2	729	2	0	0	0	0	multi-exon	FALSE	canonical	3	3784	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTTCTAGTCCATACT	NA	False	NA	-4	True	AGTAAA	-17	NA	115438971	115436563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_115436893_115438571
transcript_44788.nnic	chr5	+	784	3	NNC	ENSMUSG00000086368.3	novel	1851	2	NA	NA	12493	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGCTGACTTCTGCAGA	843	False	NA	10	True	AATAAA	-21	NA	115451758	115455656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_115452315_115453016_115453119_115455530
transcript_44789.known	chr5	-	1797	3	FSM	ENSMUSG00000029536.9	ENSMUST00000139167.3	1797	3	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	3.5	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGCTGATTTTTTAC	9709	False	NA	-1	True	NA	NA	NA	115479237	115471297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_115472654_115473525_115473630_115478900
transcript_44792.known	chr5	+	1088	2	FSM	ENSMUSG00000029535.5	ENSMUST00000031508.5	1088	2	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_1	0	201	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTGCACTTTATTGAGCAT	2414	False	NA	44	True	AATAAA	-36	NA	115479283	115481628	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_115479477_115480733
transcript_44793.known	chr5	-	571	3	FSM	ENSMUSG00000041697.10	ENSMUST00000040154.10	571	3	0	0	0	0	multi-exon	FALSE	canonical	3	7177	junction_2	62.5	3972	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGACGGTACGATTTTAT	4854	False	NA	-26	True	AATAAA	-26	NA	115487040	115483700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_115483986_115486623_115486767_115486897
transcript_44797.nnic	chr5	+	864	5	NNC	ENSMUSG00000029522.13	novel	557	4	NA	NA	-1225	0	at_least_one_novel_splicesite	FALSE	canonical	3	2118	junction_4	157.856540884437	426	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGTGATTGTTATCTC	NA	False	NA	30	True	AATAAA	-21	NA	115603095	115612781	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_115603279_115604200_115604380_115608840_115609001_115610051_115610180_115612567
transcript_448.nnic	chr1	+	874	6	NNC	ENSMUSG00000025934.16	novel	1457	7	NA	NA	3523	192	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	24.8644324286721	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGAGTATTCGAACATT	NA	False	NA	14	True	AATAAA	-20	NA	21327267	21335437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_21327312_21327554_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
transcript_44802.nnic	chr5	+	704	4	NNC	ENSMUSG00000029522.13	novel	557	4	NA	NA	-1225	0	at_least_one_novel_splicesite	FALSE	canonical	3	341	junction_2	947.073738769409	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGGTGATTGTTATCTC	NA	False	NA	30	True	AATAAA	-21	NA	115603095	115612781	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_115603279_115604200_115604380_115610051_115610180_115612567
transcript_44807.known	chr5	-	1794	5	FSM	ENSMUSG00000029524.17	ENSMUST00000112066.2	1794	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	4.96865172858795	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGTGTGGACTGTGAAC	9020	False	NA	NA	False	AATAAA	-19	NA	115622784	115616068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_115616468_115617660_115617872_115618289_115618585_115620682_115621178_115622390
transcript_44808.known	chr5	+	141	1	FSM	ENSMUSG00000119520.1	ENSMUST00000239680.1	141	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAATAATTGTGGTTTAAA	NA	False	NA	NA	False	NA	NA	NA	115627517	115627658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_115627500_115627700
transcript_44809.known	chr5	+	3706	11	FSM	ENSMUSG00000029528.20	ENSMUST00000067268.15	3706	11	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_6	21.5722043379901	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGATGTTATTTCTTGGGA	NA	False	NA	19	True	AATAAA	-23	NA	115644734	115694046	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_115644928_115682401_115682629_115682939_115683056_115683430_115683568_115683662_115683865_115684871_115685008_115689909_115690081_115690162_115690337_115690822_115690905_115691036_115691186_115691927
transcript_44813.known	chr5	+	1358	7	FSM	ENSMUSG00000067274.11	ENSMUST00000086519.12	1358	7	0	0	0	0	multi-exon	FALSE	canonical	3	6763	junction_6	6310.78692266926	290	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCCAAGCCTGGCCTTT	NA	False	NA	3	True	ATTAAA	-14	NA	115697525	115701786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_115697599_115697845_115697948_115698799_115699064_115699157_115699305_115699391_115699578_115700484_115700626_115701341
transcript_44814.known	chr5	-	1874	3	FSM	ENSMUSG00000041609.17	ENSMUST00000118576.8	1874	3	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_2	14.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTTGTGCCTCAGTTCCT	NA	False	NA	-3	True	AATAAA	-14	NA	115791045	115786235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_115787629_115789877_115789999_115790685
transcript_44815.known	chr5	-	1568	3	FSM	ENSMUSG00000041609.17	ENSMUST00000121746.8	1568	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	16.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACCTTGTGCCTCAGTT	NA	False	NA	-6	True	AATAAA	-11	NA	115791040	115786238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_115787629_115789877_115789999_115790983
transcript_44816.nic	chr5	+	2187	11	NIC	ENSMUSG00000029516.20	novel	2335	10	NA	NA	-46	422	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	12.3971770980332	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGGCAAACAGGTGAC	8435	False	NA	NA	False	ATTAAA	-45	NA	115983290	116064190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_115983361_115984342_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452
transcript_44817.nic	chr5	+	2124	11	NIC	ENSMUSG00000029516.20	novel	1671	11	NA	NA	-46	422	combination_of_known_junctions	FALSE	canonical	3	20	junction_1	11.3507708989302	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGGCAAACAGGTGAC	8435	False	NA	NA	False	ATTAAA	-45	NA	115983290	116064190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_115983361_115984405_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452
transcript_44818.known	chr5	+	1671	11	FSM	ENSMUSG00000029516.20	ENSMUST00000147330.8	1671	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	12.568213874692	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	8481	False	NA	NA	False	CATAAA	-36	NA	115983336	116063761	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_115983383_115984405_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116046696_116046881_116063452
transcript_44819.nnic	chr5	+	1940	10	NIC	ENSMUSG00000029516.20	novel	1671	11	NA	NA	-46	422	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	15.7409586041568	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGGCAAACAGGTGAC	8435	False	NA	NA	False	ATTAAA	-45	NA	115983290	116064190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_115983361_115984405_115984526_115989210_115989353_115997256_115997433_116001016_116001119_116011910_116012054_116013947_116014039_116022924_116023129_116024712_116024867_116063452
transcript_4482.known	chr10	+	2140	14	FSM	ENSMUSG00000006345.11	ENSMUST00000134503.8	2140	14	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_1	59.3897965057474	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGTGTCTTGTGTATGA	NA	False	NA	36	True	NA	NA	NA	75404489	75422034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_75404605_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
transcript_44825.known	chr5	-	2026	8	FSM	ENSMUSG00000029513.15	ENSMUST00000111999.8	2026	8	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_7	27.0313499024932	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAACTTTTGACTCGGCACA	NA	False	NA	-4	True	AATAAA	-21	NA	116162567	116151648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541_116159706_116162149_116162319_116162423
transcript_44826.known	chr5	-	2089	7	FSM	ENSMUSG00000029513.15	ENSMUST00000031486.14	2089	7	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_6	10.0788557551606	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGACTCGGCACATTTT	NA	False	NA	0	True	AATAAA	-25	NA	116162521	116151644	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158062_116158178_116158432_116158527_116159541_116159706_116162149
transcript_44827.known	chr5	-	794	7	FSM	ENSMUSG00000029513.15	ENSMUST00000148208.2	794	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	82.0135490161365	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGGAATGAGAGGCAGCCAT	NA	False	NA	NA	False	AAAAAG	-33	NA	116162510	116152708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158432_116158527_116159541_116159706_116162149_116162319_116162423
transcript_44828.known	chr5	-	1019	6	FSM	ENSMUSG00000029513.15	ENSMUST00000133098.9	1019	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	88.9570682970162	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCAGAGATGTCTACAGCC	NA	False	NA	NA	False	NA	NA	NA	116162415	116152493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_116152786_116152972_116153042_116156006_116156141_116158432_116158527_116159541_116159706_116162149
transcript_4483.nic	chr10	+	2329	14	NIC	ENSMUSG00000006345.11	novel	2140	14	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	138	junction_1	60.7702044712644	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGGACTTTAGTGTCT	NA	False	NA	27	True	NA	NA	NA	75404490	75422025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_75404804_75409444_75409583_75410062_75410231_75411783_75411915_75412049_75412137_75414562_75414756_75415059_75415218_75416337_75416488_75417130_75417268_75420653_75420842_75420991_75421120_75421220_75421334_75421424_75421539_75421714
transcript_44830.known	chr5	+	1599	2	FSM	ENSMUSG00000086655.2	ENSMUST00000127792.2	1599	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATACAACCTGTTAGAAT	NA	False	NA	NA	False	ATTAAA	-12	NA	116261672	116267169	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_116261887_116265784
transcript_44836.known	chr5	-	749	3	FSM	ENSMUSG00000041548.5	ENSMUST00000133335.2	749	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	178	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTGGCTTGGTTGATGGGA	NA	False	NA	NA	False	NA	NA	NA	116553951	116546998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_116547550_116553465_116553530_116553817
transcript_44837.known	chr5	-	1816	3	FSM	ENSMUSG00000041548.5	ENSMUST00000036991.5	1816	3	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_2	24.5	718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTGCTTCATTTAGCGA	NA	False	NA	0	True	AATAAA	-20	NA	116560923	116546549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_116547550_116553465_116553530_116560171
transcript_44838.nnic	chr5	+	432	3	NNC	ENSMUSG00000086219.8	novel	562	3	NA	NA	7722	481	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	62	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTGTTGTTGTTGTTTTG	NA	False	NA	11	True	NA	NA	NA	116584500	116600638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_116584607_116599782_116599924_116600453
transcript_44848.known	chr5	+	3360	4	FSM	ENSMUSG00000086219.8	ENSMUST00000126959.5	3360	4	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_3	60.4281023659982	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTGTCCTTCACAACCA	NA	False	NA	NA	False	NA	NA	NA	116576778	116603546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_116576898_116577427_116577496_116599782_116599863_116600453
transcript_4485.nic	chr10	+	600	2	ISM	ENSMUSG00000006344.18	ENSMUST00000218807.2	2051	11	20796	0	6316	0	3prime_fragment	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGATTTGGTGGTTCTAAGC	NA	False	NA	NA	False	ATTAAA	-19	NA	75446230	75451021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_75446373_75450563
transcript_44850.nnic	chr5	+	568	4	NNC	ENSMUSG00000086219.8	novel	3360	4	NA	NA	-55	481	at_least_one_novel_splicesite	FALSE	canonical	3	130	junction_3	120.252512101272	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTGTTGTTGTTGTTTTG	NA	False	NA	11	True	NA	NA	NA	116576723	116600638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_116576898_116577427_116577496_116599782_116599924_116600453
transcript_44851.known	chr5	+	562	3	FSM	ENSMUSG00000086219.8	ENSMUST00000133548.5	562	3	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_2	4	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTTCATTCCGTTTAAAG	NA	False	NA	NA	False	NA	NA	NA	116576778	116600157	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_116576898_116577427_116577496_116599782
transcript_44854.known	chr5	-	1694	13	FSM	ENSMUSG00000066900.12	ENSMUST00000166397.3	1694	13	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	144.428375174533	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTGCCTTGGGCTTCTAC	NA	False	NA	-23	True	AATAAA	-15	NA	117254178	117230501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_117230922_117231010_117231097_117232974_117233060_117236335_117236442_117237365_117237388_117237541_117237604_117238664_117238761_117243219_117243377_117244710_117244731_117246412_117246485_117247822_117247879_117250874_117250945_117253736
transcript_44858.known	chr5	+	4467	21	FSM	ENSMUSG00000061288.14	ENSMUST00000111978.8	4467	21	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	2.74727137356323	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGCCTGGCTGTGTTCTTGT	1386	False	NA	NA	False	AATAAA	-14	NA	117258193	117413282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_117258405_117323591_117323677_117331693_117331905_117337056_117337129_117338135_117338238_117341314_117341361_117342363_117342461_117344711_117344826_117347618_117347711_117353413_117353508_117355223_117355306_117363304_117363473_117365937_117366145_117379160_117379296_117388925_117389163_117390606_117390736_117393923_117394128_117401629_117401870_117403965_117404179_117410161_117410345_117411737
transcript_4486.known	chr10	-	3151	15	FSM	ENSMUSG00000006342.16	ENSMUST00000095541.11	3151	15	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_6	11.246768243294	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGGTTCCCGTCTGTTTGT	NA	False	NA	-1	True	NA	NA	NA	75479825	75472539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266_75477435_75477958_75478111_75478296_75478505_75479707
transcript_44863.known	chr5	-	1240	4	FSM	ENSMUSG00000032959.13	ENSMUST00000036951.13	1240	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1275.14783456664	4390	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCTGCGGGTATTTCCTT	NA	False	NA	-17	True	AATAAA	-15	NA	117425690	117420718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_117421531_117423785_117423887_117424199_117424310_117425473
transcript_44866.known	chr5	+	4236	10	FSM	ENSMUSG00000066894.15	ENSMUST00000111967.8	4236	10	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_3	6.48264539813992	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTTCTATGGTCTTGAT	NA	False	NA	3	True	AATAAA	-19	NA	117457147	117493070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_117457569_117461564_117461646_117462917_117463200_117472832_117473133_117476271_117476527_117481790_117482079_117486359_117486471_117487948_117487965_117489629_117489857_117490815
transcript_44867.known	chr5	+	572	3	FSM	ENSMUSG00000066894.15	ENSMUST00000128524.2	572	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAGTGTGGGCTTTAGTG	NA	False	NA	NA	False	NA	NA	NA	117457425	117463265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_117457569_117461564_117461646_117462917
transcript_4487.known	chr10	-	2275	13	FSM	ENSMUSG00000006342.16	ENSMUST00000077610.6	2275	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_12	20.894410470001	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATACCTGTCCTAGCCTG	NA	False	NA	NA	False	NA	NA	NA	75479814	75473044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_75473205_75473334_75473441_75473515_75473693_75473798_75474072_75474180_75474430_75475175_75475335_75475428_75475573_75475667_75475937_75476022_75476109_75476289_75476492_75476608_75476784_75477266_75477435_75479707
transcript_44872.known	chr5	-	2796	11	FSM	ENSMUSG00000029363.15	ENSMUST00000086461.13	2796	11	0	0	0	0	multi-exon	TRUE	canonical	3	1613	junction_7	125.046431376509	864	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGACCGTCATGCACCGAG	NA	False	NA	NA	False	AATAAA	-19	NA	117527112	117516167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_117517972_117518831_117518887_117519900_117519979_117520400_117520531_117520843_117520926_117521459_117521620_117522595_117522670_117523452_117523533_117524786_117524924_117525933_117525999_117526981
transcript_44878.known	chr5	+	2421	9	FSM	ENSMUSG00000029364.16	ENSMUST00000031309.16	2421	9	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_4	52.4760361974873	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTCTCTGTTCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	117495368	117516666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_117495539_117501655_117501825_117508755_117509001_117509153_117509286_117512177_117512279_117513833_117514007_117514561_117514673_117514755_117514864_117515454
transcript_44883.known	chr5	-	772	3	FSM	ENSMUSG00000029363.15	ENSMUST00000111953.2	772	3	0	0	0	0	multi-exon	FALSE	canonical	3	1895	junction_2	55	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATGAATTGTAGTACAGTT	NA	False	NA	NA	False	NA	NA	NA	117527110	117524345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_117524924_117525933_117525999_117526981
transcript_44884.nic	chr5	+	947	3	ISM	ENSMUSG00000029361.19	ENSMUST00000102557.10	4591	29	82454	-455	30393	0	3prime_fragment	FALSE	canonical	3	46	junction_1	6.5	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTCCTAGATGTCGTTA	NA	False	NA	NA	False	NA	NA	NA	118087632	118092429	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_118087894_118090829_118090949_118091862
transcript_44886.nic	chr5	+	2751	3	ISM	ENSMUSG00000029361.19	ENSMUST00000102557.10	4591	29	82454	-2259	30393	1804	3prime_fragment	FALSE	canonical	3	46	junction_1	6.5	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACGAAGCAAGGTGGCCAT	NA	False	NA	NA	False	NA	NA	NA	118087632	118094233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_118087894_118090829_118090949_118091862
transcript_44887.known	chr5	+	3959	12	FSM	ENSMUSG00000032898.10	ENSMUST00000202447.4	3959	12	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_9	98.2366008780135	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCAGTGACCTGCCCGCTT	NA	False	NA	11	True	AATAAA	-22	NA	118114794	118148266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_118115105_118115922_118116059_118117805_118117901_118124163_118124286_118126842_118126990_118127188_118127326_118128867_118129005_118132546_118132727_118133434_118133568_118138381_118138594_118140079_118140238_118146074
transcript_44888.known	chr5	+	3883	12	FSM	ENSMUSG00000032898.10	ENSMUST00000035579.10	3883	12	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_9	49.846707161818	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCAGTGACCTGCCCGCT	NA	False	NA	10	True	AATAAA	-21	NA	118114848	118148265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_118115105_118115922_118116059_118117805_118117901_118124163_118124286_118126842_118126990_118127188_118127326_118128867_118129005_118132546_118132727_118133434_118133568_118138402_118138594_118140079_118140238_118146074
transcript_44889.known	chr5	+	1971	4	FSM	ENSMUSG00000032898.10	ENSMUST00000201427.4	1971	4	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_3	13.0979218029257	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAATTA	NA	False	NA	NA	False	NA	NA	NA	118114838	118125637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_118115105_118115922_118116059_118117805_118117901_118124163
transcript_4489.nic	chr10	-	1677	10	ISM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	-44	99167	-19	4787	5prime_fragment	FALSE	canonical	3	63	junction_8	9.01986833004551	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGAGAAAGTGGATTTCCA	NA	False	NA	NA	False	NA	NA	NA	75600194	75581112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_75581232_75582321_75582609_75583659_75583810_75585877_75586008_75587269_75587451_75589210_75589346_75590084_75590199_75590645_75590739_75591202_75591335_75599858
transcript_44891.known	chr5	+	785	8	FSM	ENSMUSG00000029359.14	ENSMUST00000151792.8	785	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	31.162510181568	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCAGTAACCCTTCTTCAGT	4368	False	NA	-88	True	NA	NA	NA	118174095	118199838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_118174195_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194509_118194601_118194710_118197506_118197555_118199666
transcript_44892.nic	chr5	+	978	7	NIC	ENSMUSG00000029359.14	novel	785	8	NA	NA	-3	0	intron_retention	FALSE	canonical	3	27	junction_1	24.4040069569642	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGGCATCCCCATCTGTC	4365	False	NA	9	True	AATAAA	-14	NA	118174092	118199935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_118174195_118184379_118184450_118191648_118191730_118192894_118193035_118194441_118194710_118197506_118197555_118199666
transcript_44893.nnic	chr5	+	833	7	NIC	ENSMUSG00000029359.14	novel	785	8	NA	NA	-26	0	combination_of_known_splicesites	FALSE	canonical	3	3	junction_1	32.949456242352	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCGGCATCCCCATCTGTC	4342	False	NA	9	True	AATAAA	-14	NA	118174069	118199935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_118174195_118191648_118191730_118192894_118193035_118194441_118194504_118194601_118194710_118197506_118197555_118199666
transcript_44897.nnic	chr5	+	2542	6	NNC	ENSMUSG00000032840.8	novel	5649	5	NA	NA	-10	-2981	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	73.3255753472143	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGGCTGTGGAATGTGG	1629	False	NA	7	True	NA	NA	NA	118383281	118401177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_118383524_118393734_118393892_118397040_118397193_118397439_118397554_118399164_118399994_118400129
transcript_44898.known	chr5	+	5649	5	FSM	ENSMUSG00000032840.8	ENSMUST00000049138.8	5649	5	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_3	13.6633634219397	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTTACAGTGCCGGG	1639	False	NA	8	True	AATAAA	-18	NA	118383291	118404158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_118383524_118393734_118393892_118397040_118397193_118397439_118397554_118399164
transcript_4490.known	chr10	-	7417	37	FSM	ENSMUSG00000020196.11	ENSMUST00000001712.8	7417	37	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_35	14.4571258434836	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTCTTTGCTCATC	NA	False	NA	-4	True	AATAAA	-13	NA	75600150	75481945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_75482522_75482708_75482936_75483890_75484056_75488708_75488977_75491199_75491275_75492608_75493287_75493629_75493727_75494467_75494632_75520125_75520240_75530548_75530881_75535746_75535930_75549286_75549466_75551432_75551585_75553271_75553533_75557111_75557374_75561092_75561239_75561382_75561590_75562691_75562854_75568233_75568350_75569453_75569611_75570799_75571043_75573154_75573350_75574044_75574198_75575159_75575348_75575853_75575933_75578078_75578297_75579035_75579173_75581062_75581232_75582321_75582609_75583659_75583810_75585877_75586008_75587269_75587451_75589210_75589346_75590084_75590199_75590645_75590739_75591202_75591335_75599858
transcript_44902.known	chr5	+	4777	8	FSM	ENSMUSG00000018604.19	ENSMUST00000121021.8	4777	8	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	319.496925985659	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGAAGTTGTGGTAATG	NA	False	NA	22	True	AATAAA	-16	NA	119808926	119822789	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_119809123_119809297_119810470_119812090_119812359_119813622_119813770_119815565_119815643_119816745_119816898_119818459_119819131_119820695
transcript_44903.known	chr5	+	4982	7	FSM	ENSMUSG00000018604.19	ENSMUST00000079719.11	4982	7	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_2	196.719272625288	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAACAAAACAAAAAATTAA	NA	False	NA	NA	False	NA	NA	NA	119808733	119822626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_119810470_119812090_119812359_119813622_119813770_119815565_119815643_119816745_119816898_119818459_119819131_119820695
transcript_44905.nic	chr5	+	2884	3	NIC	ENSMUSG00000018604.19	novel	485	2	NA	NA	-72	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	538	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGAAGTTGTGGTAATG	NA	False	NA	22	True	AATAAA	-16	NA	119818241	119822789	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_119818361_119818459_119819131_119820695
transcript_44908.nic	chr5	+	2386	2	ISM	ENSMUSG00000018604.19	ENSMUST00000018748.9	4856	8	9037	719	-194	-556	3prime_fragment	FALSE	canonical	3	1076	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAGTATTTATGTAATTAT	NA	False	NA	21	True	AATAAA	-21	NA	119818119	119822070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_119819131_119820695
transcript_44909.nic	chr5	+	2925	2	ISM	ENSMUSG00000018604.19	ENSMUST00000018748.9	4856	8	9217	0	-14	0	3prime_fragment	FALSE	canonical	3	1076	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTGAAGTTGTGGTAATG	NA	False	NA	22	True	AATAAA	-16	NA	119818299	119822789	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_119819131_119820695
transcript_4491.known	chr10	-	687	6	FSM	ENSMUSG00000001665.12	ENSMUST00000173537.2	687	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10.6470653233649	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCAGGAGGCCCATGAAGTT	NA	False	NA	NA	False	NA	NA	NA	75616852	75610753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_75610845_75611323_75611332_75611704_75611882_75612577_75612729_75613934_75614023_75616680
transcript_44910.known	chr5	-	1345	3	FSM	ENSMUSG00000086847.2	ENSMUST00000135385.2	1345	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCTTATTTCCGGTCGGA	2703	False	NA	NA	False	ATTAAA	-17	NA	119829283	119823159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_119824120_119826288_119826463_119829072
transcript_44912.known	chr5	+	4010	24	FSM	ENSMUSG00000029594.13	ENSMUST00000031590.12	4010	24	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_16	11.5488606136917	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGATGTCACTCTGTCAC	NA	False	NA	21	True	AATAAA	-31	NA	120254529	120337046	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_120254715_120256724_120256908_120257696_120257817_120257959_120257996_120258161_120258367_120260957_120261215_120262215_120262297_120262758_120262838_120264238_120264311_120265029_120265231_120266248_120266380_120268774_120268894_120269218_120269316_120270198_120270310_120270906_120271108_120271825_120271947_120278268_120278439_120278601_120278663_120279615_120279696_120281441_120281498_120282061_120282179_120313923_120314030_120324282_120324404_120335946
transcript_44913.known	chr5	-	1476	9	FSM	ENSMUSG00000029596.14	ENSMUST00000031594.13	1476	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	2.2220486043289	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTGTGGCTCCCTGGGTTC	1703	False	NA	NA	False	AATAAA	-15	NA	120610875	120596266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_120596617_120597509_120597635_120597820_120598049_120598671_120598761_120600041_120600182_120600910_120600951_120601096_120601291_120605338_120605564_120610790
transcript_44915.known	chr5	+	2898	16	FSM	ENSMUSG00000032754.15	ENSMUST00000068326.14	2898	16	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	54.5084702897938	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGAGTCCCACAGGGT	-4	True	NA	6	True	AATAAA	-22	NA	120649232	120672089	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
transcript_44917.known	chr5	+	2775	15	FSM	ENSMUSG00000032754.15	ENSMUST00000111890.9	2775	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	55.9101410975775	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTACCAGAAGAGTCCCAC	63	False	NA	1	True	AATAAA	-17	NA	120649299	120672084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658838_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
transcript_44918.known	chr5	+	2661	14	FSM	ENSMUSG00000032754.15	ENSMUST00000076051.12	2661	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	64.1450833343938	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGTACCAGAAGAGTCCCACA	80	False	NA	2	True	AATAAA	-18	NA	120649316	120672085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120662063_120662124_120662268_120662400_120663723_120663866_120665805_120665928_120667574_120667729_120670924
transcript_44919.nnic	chr5	+	2608	13	NIC	ENSMUSG00000032754.15	novel	2898	16	NA	NA	-43	0	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_5	57.0079794609686	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGAAGAGTCCCACAGGGT	391	False	NA	6	True	AATAAA	-22	NA	120649189	120672089	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_120649349_120651184_120651398_120657694_120657848_120657930_120657984_120658667_120658726_120658845_120658952_120659032_120659201_120659818_120659927_120665805_120665928_120667574_120667729_120668380_120668462_120669145_120669214_120670924
transcript_4492.known	chr10	-	1880	5	FSM	ENSMUSG00000001665.12	ENSMUST00000001715.10	1880	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	2.34520787991171	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTTGCTTCTGGATCCT	NA	False	NA	5	True	AATAAA	-23	NA	75617248	75609948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_75610845_75611704_75611882_75612577_75612729_75613934_75614023_75616680
transcript_44922.known	chr5	-	2622	2	FSM	ENSMUSG00000032741.10	ENSMUST00000202072.2	2622	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAATAAATAAATAAAT	9262	False	NA	NA	False	NA	NA	NA	120726659	120720963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_120723494_120726567
transcript_44924.nic	chr5	-	1121	4	NIC	ENSMUSG00000029600.11	novel	712	3	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_2	29.8923996285938	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTCAGTCCTGATACTC	6314	False	NA	-3	True	NA	NA	NA	120750655	120740168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_120740583_120742274_120742313_120749442_120749795_120750338
transcript_44925.known	chr5	-	796	4	FSM	ENSMUSG00000029600.11	ENSMUST00000140554.2	796	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	33.2365260920372	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGAGGGGTCTCGGATGGC	6334	False	NA	NA	False	NA	NA	NA	120750635	120747975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_120748028_120749442_120749795_120750044_120750140_120750338
transcript_44926.nnic	chr5	-	904	3	NNC	ENSMUSG00000029600.11	novel	712	3	NA	NA	-1288	0	at_least_one_novel_splicesite	TRUE	canonical	3	23	junction_2	1.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTCAGTCCTGATACTC	9556	False	NA	-3	True	NA	NA	NA	120745070	120740168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_120740583_120742274_120742313_120744618
transcript_44927.known	chr5	-	1573	3	FSM	ENSMUSG00000029600.11	ENSMUST00000031599.9	1573	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	1.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGTAGTGTGTTACTTTTT	6315	False	NA	NA	False	ATTAAA	-20	NA	120750654	120747122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_120748028_120749442_120749795_120750338
transcript_44931.known	chr5	+	4322	20	FSM	ENSMUSG00000029599.14	ENSMUST00000031598.11	4322	20	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_5	36.9159410499192	108	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGGTATTCCTCCTGCC	NA	False	NA	16	True	GATAAA	-26	NA	120750803	120766657	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_120751372_120755023_120755154_120756204_120756276_120756664_120756854_120756940_120756991_120757669_120757712_120757828_120757925_120758322_120758445_120758536_120758599_120758691_120758824_120759679_120759891_120761245_120761381_120761636_120761874_120761956_120762031_120762602_120762795_120763766_120763910_120763990_120764105_120764465_120764571_120764898_120765015_120765124
transcript_44934.nnic	chr5	+	1332	6	NNC	ENSMUSG00000029602.12	novel	486	2	NA	NA	-3807	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	10.6282642044691	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCGTGACGTGTTAAAATCG	172	False	NA	11	True	TATAAA	-21	NA	120812850	120817662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_120813041_120813454_120813593_120813670_120813807_120814852_120814974_120816687_120816759_120816986
transcript_44936.nic	chr5	-	1932	6	ISM	ENSMUSG00000029603.16	ENSMUST00000145174.8	2961	8	11920	0	-568	0	3prime_fragment	FALSE	canonical	3	95	junction_3	14.7051011557214	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120821548	120818267	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125_120821188_120821359
transcript_44937.nic	chr5	-	1785	5	ISM	ENSMUSG00000029603.16	ENSMUST00000145174.8	2961	8	12239	0	-249	0	3prime_fragment	FALSE	canonical	3	95	junction_3	13.57156954814	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGGCCTTTTTCTGCCAA	NA	False	NA	-19	True	AATAAA	-15	NA	120821229	120818267	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_120819538_120820185_120820276_120820368_120820531_120820644_120820804_120821125
transcript_44938.known	chr5	-	1831	1	FSM	ENSMUSG00000029603.16	ENSMUST00000201264.2	1831	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACCAGTCCCACTGTGGG	NA	False	NA	-65	True	TTTAAA	-40	NA	120820144	120818313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_120818300_120820100
transcript_44939.known	chr5	-	1489	7	FSM	ENSMUSG00000066861.15	ENSMUST00000162096.8	1489	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	130.842674825745	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGTGTGAACTCTGAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	121025676	121014784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_121015091_121015245_121015273_121016383_121016538_121017162_121017396_121019886_121020133_121023835_121024125_121025442
transcript_4494.nnic	chr10	-	677	3	NNC	ENSMUSG00000001666.9	novel	649	3	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_2	232.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGACTTCTTTGCTTCTGT	NA	False	NA	-4	True	AATAAA	-21	NA	75609263	75607063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_75607341_75608571_75608748_75609039
transcript_44940.known	chr5	-	1977	7	FSM	ENSMUSG00000066861.15	ENSMUST00000086368.12	1977	7	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_5	116.597241248096	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCTGCCTCGGTCTCTC	NA	False	NA	NA	False	NA	NA	NA	121025645	121014204	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_121015091_121015245_121015273_121016383_121016538_121017162_121017396_121019947_121020133_121023835_121024125_121025442
transcript_44945.known	chr5	-	1885	7	FSM	ENSMUSG00000052776.11	ENSMUST00000080322.8	1885	7	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	161.447015732372	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTCATTGGTATCAACG	NA	False	NA	NA	False	AATAAA	-37	NA	121045584	121034318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_121035088_121035242_121035270_121036381_121036536_121037135_121037369_121039932_121040118_121043658_121043948_121045356
transcript_4495.known	chr10	-	649	3	FSM	ENSMUSG00000001666.9	ENSMUST00000001716.8	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_2	12	281	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACATGACTTCTTTGCTTC	NA	False	NA	-7	True	AATAAA	-18	NA	75609248	75607066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_75607341_75608571_75608748_75609049
transcript_44950.nnic	chr5	+	2068	8	NNC	ENSMUSG00000032623.10	novel	2021	6	NA	NA	-25838	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	64.2682515964555	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATTAATTTATTCTCCC	NA	False	NA	19	True	ATTAAA	-25	NA	121026760	121059715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_121026862_121051816_121051837_121052672_121053130_121053724_121054014_121054901_121055099_121057064_121057298_121057959_121058114_121059098
transcript_44953.nnic	chr5	+	2062	7	NNC	ENSMUSG00000032623.10	novel	2021	6	NA	NA	-25848	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_1	52.429052590673	35	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGAATTAATTTATTCTCCC	NA	False	NA	19	True	ATTAAA	-25	NA	121026750	121059715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_121026866_121052672_121053130_121053724_121054014_121054901_121055099_121057064_121057298_121057959_121058114_121059098
transcript_44966.known	chr5	+	1270	7	FSM	ENSMUSG00000029614.14	ENSMUST00000031617.13	1270	7	0	0	0	0	multi-exon	FALSE	canonical	3	7748	junction_1	3319.97705815367	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTGACTATAGACTCA	NA	False	NA	NA	False	AATAGA	-23	NA	121342543	121347304	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_121342616_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
transcript_44967.nnic	chr5	+	1256	7	NNC	ENSMUSG00000029614.14	novel	1270	7	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	211	junction_1	6037.22683071918	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTGGTGTCCTTTTTGTG	NA	False	NA	1	True	ATTAAA	-15	NA	121342607	121347029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_121342941_121343468_121343727_121343816_121343919_121344729_121344874_121345209_121345259_121346453_121346639_121346844
transcript_44978.known	chr5	+	829	2	FSM	ENSMUSG00000029614.14	ENSMUST00000146579.2	829	2	0	0	0	0	multi-exon	FALSE	canonical	3	7748	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAGAAGTGTGTTAGAGTT	NA	False	NA	NA	False	NA	NA	NA	121342583	121344265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_121342616_121343468
transcript_44979.known	chr5	+	714	1	FSM	ENSMUSG00000029614.14	ENSMUST00000197044.2	714	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	87	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAACAAAAAA	NA	False	NA	NA	False	AAAAAG	-10	NA	121342608	121343322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_121342600_121343300
transcript_4498.known	chr10	-	1037	5	FSM	ENSMUSG00000001663.11	ENSMUST00000001713.10	1037	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	2.87228132326901	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTCCGTGTTGTTTCTTT	9576	False	NA	NA	False	AATAAA	-24	NA	75634418	75619646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_75620068_75622628_75622806_75629910_75630062_75632876_75632965_75634218
transcript_44980.known	chr5	+	486	4	FSM	ENSMUSG00000029614.14	ENSMUST00000201155.2	486	4	0	0	0	0	multi-exon	FALSE	canonical	2	335	junction_2	7809.67657603196	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTGTCCTTTTTGT	NA	False	NA	0	True	ATTAAA	-14	NA	121344786	121347028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_121344874_121345209_121345259_121346472_121346639_121346844
transcript_44981.known	chr5	-	2503	12	FSM	ENSMUSG00000042726.15	ENSMUST00000042312.14	2503	12	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	8.79894809640935	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGATTCTTTCTATAG	3569	False	NA	1	True	AATAAA	-19	NA	121523695	121509787	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_121510476_121510665_121510739_121511200_121511538_121512009_121512131_121513078_121513310_121513858_121513936_121515800_121516008_121516558_121516965_121517478_121517533_121517608_121517745_121522102_121522168_121523587
transcript_44982.known	chr5	-	2425	12	FSM	ENSMUSG00000042726.15	ENSMUST00000120784.8	2425	12	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	10.9499235817553	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAGCTTGTGATTCTTTC	3630	False	NA	-4	True	AATAAA	-14	NA	121523634	121509792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_121510476_121510665_121510739_121511212_121511538_121512009_121512131_121513078_121513310_121513858_121513936_121515800_121516008_121516558_121516965_121517478_121517533_121517608_121517745_121522102_121522168_121523587
transcript_44986.known	chr5	+	5447	24	FSM	ENSMUSG00000042719.18	ENSMUST00000042163.15	5447	24	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_8	45.1361728780741	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCAGGTTTGTTGAGACT	NA	False	NA	19	True	AATACA	-18	NA	121535998	121580472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_121536126_121545255_121545342_121546259_121546399_121547148_121547268_121551069_121551145_121552551_121552660_121552864_121552944_121555439_121555552_121555989_121556080_121558525_121558696_121559353_121559467_121561597_121561806_121562576_121562667_121564033_121564215_121564789_121564890_121568667_121568820_121569522_121569649_121572888_121573133_121573522_121573647_121574721_121574788_121575670_121575769_121576790_121576902_121577397_121577545_121577890
transcript_44989.known	chr5	+	1366	11	FSM	ENSMUSG00000029452.19	ENSMUST00000094357.11	1366	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4.13400532171888	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAAATCTCAGGTTC	NA	False	NA	NA	False	NA	NA	NA	121601214	121633457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_121601334_121601849_121601897_121602861_121602926_121605916_121606049_121620395_121620501_121625812_121625863_121627310_121627395_121629138_121629278_121631693_121631839_121632266_121632341_121633050
transcript_44991.known	chr5	+	1288	10	FSM	ENSMUSG00000029452.19	ENSMUST00000031405.12	1288	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	6.43102050155013	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCGTCATTTGCAAGCTC	NA	False	NA	NA	False	AATAAA	-18	NA	121601214	121633484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_121601334_121601849_121601897_121602861_121602926_121605916_121606049_121625812_121625863_121627310_121627395_121629138_121629278_121631693_121631839_121632266_121632341_121633050
transcript_44996.known	chr5	-	5204	3	FSM	ENSMUSG00000029616.10	ENSMUST00000130451.2	5204	3	0	0	0	0	multi-exon	FALSE	canonical	3	820	junction_1	20.5	653	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGCATATGTGTATCTG	3212	False	NA	NA	False	AGTAAA	-17	NA	121590569	121578886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_121583636_121585203_121585343_121590253
transcript_44999.known	chr5	-	1123	2	FSM	ENSMUSG00000029616.10	ENSMUST00000052590.8	1123	2	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGATGGTTTTCTTTTTAG	3222	False	NA	-41	True	AATAAA	-14	NA	121590559	121582818	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_121583636_121590253
transcript_45.known	ERCC-00131	+	755	1	FSM	ERCC-00131A	DQ855003	755	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00131_+_0_800
transcript_450.nic	chr1	+	1051	5	ISM	ENSMUSG00000025934.16	ENSMUST00000121676.8	894	8	16503	-192	3589	192	3prime_fragment	FALSE	canonical	3	69	junction_1	2	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGAGTATTCGAACATT	NA	False	NA	14	True	AATAAA	-20	NA	21327333	21335437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_21327607_21329071_21329205_21330271_21330414_21333016_21333149_21335066
transcript_4500.nnic	chr10	-	1019	6	NNC	ENSMUSG00000033318.8	novel	1370	5	NA	NA	-704	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	16.6805275695944	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCCTTTTTTTTCTTTTTT	NA	False	NA	-4	True	AATAAA	-21	NA	75671419	75667678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_75667929_75668228_75668403_75668494_75668646_75669485_75669574_75670008_75670242_75671296
transcript_45000.known	chr5	-	578	4	FSM	ENSMUSG00000029454.16	ENSMUST00000126524.5	578	4	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_2	20.9920619917784	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATTGCTTAAAGTTGCTA	8672	False	NA	-10	True	AATAAA	-16	NA	121665316	121663114	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_121663303_121663725_121663831_121664801_121664924_121665153
transcript_45003.known	chr5	-	3867	13	FSM	ENSMUSG00000029455.15	ENSMUST00000031411.15	3867	13	0	0	0	0	multi-exon	TRUE	canonical	3	476	junction_10	93.9036148872283	631	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGCCTGGCGTGGTGCCTC	NA	False	NA	NA	False	AATAAA	-27	NA	121731887	121704089	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_121706087_121706988_121707104_121708666_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
transcript_45007.known	chr5	-	1799	11	FSM	ENSMUSG00000029455.15	ENSMUST00000129753.8	1799	11	0	0	0	0	multi-exon	FALSE	canonical	3	476	junction_8	71.1047818363857	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACACTCTCTGGCAGGCCT	NA	False	NA	NA	False	NA	NA	NA	121731643	121708378	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_121708825_121710079_121710245_121710738_121710924_121711485_121711589_121713153_121713268_121713958_121714088_121714519_121714632_121716405_121716486_121717666_121717808_121718676_121718782_121731424
transcript_45015.nnic	chr5	-	2170	12	NNC	ENSMUSG00000042647.14	novel	3881	11	NA	NA	-36	-1483	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	13.7846483061999	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTCTACTTCCTATG	NA	False	NA	-1	True	NA	NA	NA	121757037	121736450	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_121736569_121736702_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752323_121756833
transcript_45016.nnic	chr5	-	2054	12	NNC	ENSMUSG00000042647.14	novel	3881	11	NA	NA	-30	-1483	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	16.3110265396406	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATCTGTCTACTTCCTATG	NA	False	NA	-1	True	NA	NA	NA	121757031	121736450	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_121736569_121736702_121737026_121737257_121737336_121737951_121738096_121742316_121742490_121743605_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752323_121756943
transcript_4502.known	chr10	-	1449	1	FSM	ENSMUSG00000033318.8	ENSMUST00000218745.2	1449	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAAAAG	-11	NA	75673258	75671809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_75671800_75673300
transcript_45020.known	chr5	-	2269	7	FSM	ENSMUSG00000042647.14	ENSMUST00000111776.6	2269	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	4.49691252107735	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATCAACTCCCTTTCTAT	NA	False	NA	NA	False	NA	NA	NA	121757001	121742634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_121743765_121745225_121745317_121745422_121745561_121745958_121746100_121747828_121748230_121752122_121752323_121756833
transcript_45022.known	chr5	-	3626	21	FSM	ENSMUSG00000029456.13	ENSMUST00000111770.2	3626	21	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	12.9348366823861	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCTGTTCTGAGCTAGAT	NA	False	NA	-7	True	NA	NA	NA	121798577	121759090	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_121759443_121760052_121760131_121760741_121760886_121764110_121764284_121765327_121765487_121767963_121768055_121768160_121768299_121768707_121768849_121769339_121769741_121770551_121770726_121772739_121772886_121775306_121775458_121777186_121777369_121780674_121780744_121783431_121783574_121784764_121784925_121785897_121786057_121787416_121787612_121790018_121790168_121794076_121794277_121798355
transcript_45023.known	chr5	+	4472	25	FSM	ENSMUSG00000042605.17	ENSMUST00000051950.14	4472	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	70.6657699432099	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCAGTTAGTGTGTGTTT	642	False	NA	4	True	TTTAAA	-7	NA	121849671	121953013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_121850340_121883785_121883823_121885472_121885533_121885987_121886060_121887141_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935855_121940143_121940329_121941010_121941144_121944284_121944339_121948913_121949060_121949447_121949676_121951447_121951617_121952400
transcript_45024.known	chr5	+	3294	19	FSM	ENSMUSG00000042605.17	ENSMUST00000161064.8	3294	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	62.3418492895383	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACCCAGTTAGTGTGTGTT	NA	False	NA	3	True	TTTAAA	-6	NA	121887258	121953012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_121887293_121910729_121910852_121915432_121915525_121915970_121916169_121917480_121917660_121919395_121919606_121921919_121922103_121923277_121923476_121923821_121923930_121924396_121924468_121933000_121933312_121934435_121934500_121935285_121935439_121935787_121935855_121940143_121940329_121941010_121941144_121948913_121949060_121949447_121949676_121952400
transcript_45025.known	chr5	+	2368	4	FSM	ENSMUSG00000044134.10	ENSMUST00000056654.8	2368	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	9.62635271879577	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAATGGCTGGGTGTATTA	5424	False	NA	-1	True	AATAAA	-10	NA	121987057	121992662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_121987188_121988532_121988610_121989230_121989343_121990613
transcript_45026.known	chr5	+	2335	3	FSM	ENSMUSG00000044134.10	ENSMUST00000198271.5	2335	3	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	19.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATCCACAGTTGATATAT	5413	False	NA	32	True	AATAAA	-43	NA	121987046	121992695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_121987188_121989230_121989343_121990613
transcript_45027.known	chr5	+	662	7	FSM	ENSMUSG00000013936.13	ENSMUST00000014080.13	662	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	1.91485421551268	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGTGACCATTGGCTCAT	3605	False	NA	NA	False	AATAAA	-21	NA	122239013	122244917	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_122239093_122239811_122239902_122240758_122240835_122241893_122241999_122242889_122242969_122243050_122243100_122244733
transcript_45028.known	chr5	-	5717	14	FSM	ENSMUSG00000038593.19	ENSMUST00000111738.8	5717	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	9.03379584978658	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAGATGGCCT	NA	False	NA	NA	False	NA	NA	NA	122402523	122375910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_122379899_122380668_122380789_122383563_122383727_122384547_122384689_122385594_122385681_122385982_122386109_122386911_122387047_122388509_122388531_122389674_122389785_122392546_122392647_122395532_122395685_122396897_122397029_122399469_122399591_122402200
transcript_45032.nic	chr5	+	2940	8	NIC	ENSMUSG00000064267.14	novel	2805	7	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_1	18.6153327191565	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATCGGCTCCTTTTTGTT	NA	False	NA	28	True	AATAAA	-39	NA	122344876	122380360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_122345220_122348404_122348456_122354294_122354427_122371482_122371756_122375743_122375849_122376468_122376701_122378276_122378390_122378669
transcript_45033.known	chr5	+	2790	8	FSM	ENSMUSG00000064267.14	ENSMUST00000072602.14	2790	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	20.2887321698825	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCATCGGCTCCTTTTTGTT	NA	False	NA	28	True	AATAAA	-39	NA	122347791	122380360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_122347985_122348404_122348456_122354294_122354427_122371482_122371756_122375743_122375849_122376468_122376701_122378276_122378390_122378669
transcript_45037.known	chr5	-	1631	11	FSM	ENSMUSG00000038569.14	ENSMUST00000049009.7	1631	11	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_9	5.37494186015067	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGGTCATTTTATA	9992	False	NA	NA	False	AATAAA	-17	NA	122492296	122463570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_122464043_122469531_122469761_122471358_122471479_122472324_122472390_122472472_122472580_122477794_122477902_122482260_122482361_122489321_122489437_122489623_122489774_122490606_122490678_122492201
transcript_45039.known	chr5	-	1726	1	FSM	ENSMUSG00000038569.14	ENSMUST00000200653.2	1726	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGTGTGCCTCAAATCC	9989	False	NA	NA	False	NA	NA	NA	122492283	122490557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_122490600_122492300
transcript_45041.known	chr5	+	1592	8	FSM	ENSMUSG00000029464.11	ENSMUST00000031420.11	1592	8	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_4	35.5154464814327	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGTTTGAGGTTTGTAAA	8039	False	NA	NA	False	AATAAA	-42	NA	122510513	122520965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519369_122519460_122519558_122520110_122520240_122520323
transcript_45046.known	chr5	+	2198	7	FSM	ENSMUSG00000029464.11	ENSMUST00000127608.8	2198	7	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_4	30.9861079984061	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAACTGAAATGTAAATAAA	7464	False	NA	NA	False	ATTAAA	-5	NA	122509938	122520904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_122510720_122511973_122512083_122516529_122516698_122518043_122518169_122519252_122519558_122520110_122520240_122520323
transcript_45047.known	chr5	-	1388	7	FSM	ENSMUSG00000029463.6	ENSMUST00000031419.6	1388	7	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_4	23.7235232534199	250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAATTTTAAATTATCTTT	NA	False	NA	-20	True	ATTAAA	-21	NA	122510427	122502642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_122502983_122504376_122504460_122505410_122505583_122505661_122505792_122507579_122507702_122508577_122508637_122509945
transcript_45055.known	chr5	+	1014	5	FSM	ENSMUSG00000029462.19	ENSMUST00000118830.8	1014	5	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_1	833.067074130289	726	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTTTCTTGAAAACCTGT	695	False	NA	17	True	AATAAA	-17	NA	122492447	122501349	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_122492540_122494856_122494869_122498075_122498268_122500098_122500335_122500867
transcript_45060.known	chr5	+	2716	4	FSM	ENSMUSG00000029462.19	ENSMUST00000155671.8	2716	4	0	0	0	0	multi-exon	FALSE	canonical	3	1453	junction_1	367.656844837078	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTATGTGTATGGGTGTTT	679	False	NA	11	True	AATAAA	-24	NA	122492431	122503047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_122492540_122498075_122498268_122500098_122500335_122500867
transcript_45063.known	chr5	+	874	4	FSM	ENSMUSG00000029462.19	ENSMUST00000111729.10	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	1030.830194013	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCGCATGAAGAGAAAGAATC	732	False	NA	-58	True	NA	NA	NA	122492484	122501274	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_122492540_122498091_122498268_122500098_122500335_122500867
transcript_45065.known	chr5	+	713	3	FSM	ENSMUSG00000029462.19	ENSMUST00000118765.8	713	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	716	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTACCTTCCATTTAGAC	732	False	NA	1	True	AATAAA	-1	NA	122492484	122501333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_122492540_122498075_122498268_122500867
transcript_45068.known	chr5	+	899	7	FSM	ENSMUSG00000029465.15	ENSMUST00000102525.11	899	7	0	0	0	0	multi-exon	FALSE	canonical	3	554	junction_4	26.4638117687784	817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACACTGTACCGTGTATG	4488	False	NA	38	True	ATTAAA	-22	NA	122529940	122544242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_122530061_122534879_122534980_122539709_122539787_122541421_122541491_122542186_122542314_122543146_122543242_122543931
transcript_45071.known	chr5	+	409	2	FSM	ENSMUSG00000029465.15	ENSMUST00000141395.2	409	2	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATCCTAGCACTTAGGAG	4576	False	NA	NA	False	NA	NA	NA	122530028	122535256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_122530061_122534879
transcript_45072.known	chr5	+	2751	11	FSM	ENSMUSG00000029466.12	ENSMUST00000031422.10	2751	11	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_7	29.6310647800581	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTACCAGTGTGAGCTTCA	NA	False	NA	NA	False	GATAAA	-20	NA	122560506	122582975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122578148_122578374_122579352_122579504_122581866
transcript_45074.known	chr5	+	3599	10	FSM	ENSMUSG00000029466.12	ENSMUST00000119792.2	3599	10	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_7	31.1071426040332	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGAGTGTTTTGCCTGCA	NA	False	NA	NA	False	ATTAAA	-14	NA	122560543	122581497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191_122576310_122577381_122577579_122578148_122578374_122579352
transcript_45079.nic	chr5	+	1240	7	ISM	ENSMUSG00000029466.12	ENSMUST00000119792.2	3599	10	-37	5017	0	-2068	5prime_fragment	FALSE	canonical	3	232	junction_6	26.8416136292553	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTTTTTTGTTGTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	122560506	122576480	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_122560742_122566193_122566381_122567548_122567669_122570803_122570916_122571446_122571601_122573581_122573725_122576191
transcript_4508.known	chr10	-	544	3	FSM	ENSMUSG00000033307.8	ENSMUST00000038169.8	544	3	0	0	0	0	multi-exon	FALSE	canonical	3	12818	junction_1	2119	6503	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGTTGCCTCAGCTTCTGCT	NA	False	NA	-10	True	AATAAA	-18	NA	75696074	75695186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_75695378_75695520_75695694_75695894
transcript_45080.known	chr5	-	4486	20	FSM	ENSMUSG00000029467.16	ENSMUST00000031423.10	4486	20	0	0	0	0	multi-exon	FALSE	canonical	3	1036	junction_17	105.58760524925	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GACAGAGAAAAATAACTGTC	7277	False	NA	-28	True	AATAAA	-13	NA	122640288	122594402	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_122595490_122595574_122595693_122596150_122596285_122596510_122596597_122597510_122597714_122598038_122598260_122598703_122599040_122599628_122599848_122599925_122600049_122604012_122604145_122604890_122604994_122605769_122605859_122607412_122607878_122609230_122609317_122611272_122611354_122627300_122627440_122629743_122629849_122638793_122638877_122638993_122639012_122639630
transcript_45081.known	chr5	-	2950	19	FSM	ENSMUSG00000029469.15	ENSMUST00000031426.14	2950	19	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	9.90510530540242	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCTCTTTTTACTTCATT	1243	False	NA	NA	False	ATTAAA	-20	NA	122752581	122688266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_122689267_122693559_122693606_122697217_122697304_122697759_122697832_122698721_122698809_122705323_122705414_122706973_122707103_122710702_122710853_122729142_122729290_122731112_122731209_122732587_122732752_122738502_122738588_122740330_122740442_122740747_122740814_122745030_122745121_122747235_122747417_122748140_122748245_122749005_122749171_122752500
transcript_45085.nic	chr5	-	2587	18	NIC	ENSMUSG00000029469.15	novel	2950	19	NA	NA	-33	-288	combination_of_known_junctions	FALSE	canonical	3	12	junction_16	14.5402436403627	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGTTGTGTCAAGATTGT	1210	False	NA	-1	True	AATAAA	-39	NA	122752614	122688558	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_122689267_122693559_122693606_122697217_122697304_122697759_122697832_122698721_122698809_122705323_122705414_122706973_122707103_122710702_122710853_122729142_122729290_122731112_122731209_122732587_122732752_122738502_122738588_122740330_122740442_122740747_122740814_122745030_122745121_122747235_122747417_122749005_122749171_122752500
transcript_45087.known	chr5	-	872	7	FSM	ENSMUSG00000029469.15	ENSMUST00000144065.6	872	7	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_5	10.4682058316281	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACAGTTTCTCATTTCCTA	1255	False	NA	NA	False	NA	NA	NA	122752569	122740244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_122740442_122740747_122740814_122745030_122745121_122747235_122747417_122748140_122748245_122749005_122749171_122752500
transcript_45089.known	chr5	+	712	4	FSM	ENSMUSG00000029468.18	ENSMUST00000086247.6	712	4	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_3	10.4029910228848	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCCAGAATTGGTTTAT	NA	False	NA	NA	False	NA	NA	NA	122782071	122793325	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_122782262_122790789_122790959_122792223_122792293_122793041
transcript_4509.known	chr10	+	1321	7	FSM	ENSMUSG00000009092.6	ENSMUST00000009236.6	1321	7	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_5	4.01732359773132	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGACTCAATATGTTAGT	NA	False	NA	NA	False	NA	NA	NA	75729246	75731775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_75729352_75729452_75729519_75729603_75729678_75729800_75729895_75730265_75730462_75730872_75730964_75731080
transcript_45090.known	chr5	+	2702	12	FSM	ENSMUSG00000029470.16	ENSMUST00000031429.14	2702	12	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_5	9.63207451716048	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGGGCTGTTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	122845606	122867801	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122862656_122862738_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
transcript_45091.known	chr5	+	1887	11	FSM	ENSMUSG00000029470.16	ENSMUST00000081554.13	1887	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	30.411182153938	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCCTTGTCTGTGCTGCCT	NA	False	NA	15	True	ATTAAA	-20	NA	122845646	122867107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_122845851_122852461_122852610_122856375_122856448_122856563_122856637_122857192_122857290_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
transcript_45092.nic	chr5	+	1853	11	NIC	ENSMUSG00000029470.16	novel	2702	12	NA	NA	7	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_1	28.3167794778997	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCCTTGTCTGTGCTGCCT	NA	False	NA	15	True	ATTAAA	-20	NA	122845613	122867107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_122845851_122856375_122856448_122856563_122856637_122857192_122857290_122862656_122862738_122863052_122863195_122863292_122863430_122865260_122865355_122865461_122865528_122865807_122865904_122866349
transcript_45095.nic	chr5	-	2018	13	ISM	ENSMUSG00000029471.14	ENSMUST00000199830.5	3139	14	30	2732	13	-2732	5prime_fragment	TRUE	canonical	3	28	junction_4	15.8190725251374	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTTGGAATGTCACTCAGT	4663	False	NA	-22	True	AATAAA	-16	NA	122917432	122881413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_122882021_122882120_122882195_122883770_122883825_122884312_122884513_122886016_122886106_122886240_122886263_122888077_122888115_122891761_122891896_122894665_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
transcript_45097.known	chr5	-	1084	5	FSM	ENSMUSG00000029471.14	ENSMUST00000196742.2	1084	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	7.3824115301167	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGAGTTAGCAGTGTCTT	4707	False	NA	0	True	AATAAA	-21	NA	122917388	122894338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_122894718_122895622_122895677_122897015_122897064_122901836_122902366_122917314
transcript_45098.known	chr5	-	2404	17	FSM	ENSMUSG00000029472.14	ENSMUST00000200645.5	2404	17	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_8	345.39967790952	604	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTGTCTGAAGTGGGTTT	NA	False	NA	-27	True	AATAAA	-12	NA	122959357	122925793	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938657_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_45099.known	chr5	-	2413	17	FSM	ENSMUSG00000029472.14	ENSMUST00000197074.5	2413	17	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_8	522.501461570922	586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGGGTTTTTTTTTAT	NA	False	NA	-19	True	AATAAA	-20	NA	122959343	122925785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938672_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_45100.known	chr5	-	2760	17	FSM	ENSMUSG00000029472.14	ENSMUST00000086216.9	2760	17	0	0	0	0	multi-exon	TRUE	canonical	3	1165	junction_8	284.126264845403	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCATCCTCTTAAATC	NA	False	NA	NA	False	AATAAA	-2	NA	122959402	122925521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_122926082_122926364_122926528_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_45102.known	chr5	-	1174	7	FSM	ENSMUSG00000029472.14	ENSMUST00000200058.5	1174	7	0	0	0	0	multi-exon	FALSE	canonical	3	1753	junction_2	189.823382823789	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAATTTTATTTTTAAAA	NA	False	NA	NA	False	AAGAAA	-6	NA	122959081	122943906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_45106.known	chr5	-	2422	17	FSM	ENSMUSG00000029472.14	ENSMUST00000196640.5	2422	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	562.145162385793	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGGGTTTTTTTTTATTT	NA	False	NA	-17	True	AATAAA	-22	NA	122959350	122925783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_122926082_122926364_122926504_122929670_122929819_122929889_122929998_122931499_122931622_122932479_122932555_122937401_122937538_122938513_122938696_122940192_122940283_122940885_122940968_122944307_122944499_122945362_122945465_122952611_122952679_122955883_122956068_122956916_122957027_122957670_122957751_122959042
transcript_45107.nic	chr5	-	3659	13	NIC	ENSMUSG00000029475.18	novel	5180	23	NA	NA	-44	0	intron_retention	FALSE	canonical	3	58	junction_12	99.7441170640599	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACACTGTGTTTGAGGGT	NA	False	NA	NA	False	TATAAA	-21	NA	123060214	123008730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123059447_123059535_123059967
transcript_45109.known	chr5	-	3532	12	FSM	ENSMUSG00000029475.18	ENSMUST00000031435.14	3532	12	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_11	40.2726246663991	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACACTGTGTTTGAGGGT	8594	False	NA	NA	False	TATAAA	-21	NA	123038418	123008730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_123009961_123016497_123016717_123017307_123017470_123017551_123017716_123018235_123018916_123019082_123019122_123019699_123019814_123020026_123020288_123020464_123020552_123021381_123021526_123026592_123026818_123038211
transcript_45111.known	chr5	+	4440	6	FSM	ENSMUSG00000029474.8	ENSMUST00000031434.8	4440	6	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_1	16.3389106124001	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGGCTGCAGATGGTGTGTG	514	False	NA	NA	False	ACTAAA	-16	NA	122988110	123009354	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_122988362_122999751_122999971_123002049_123002458_123004864_123004970_123005182_123005385_123006099
transcript_45112.nic	chr5	+	1751	5	NIC	ENSMUSG00000029474.8	novel	4440	6	NA	NA	15	-2346	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	85.4005269304587	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTAGTTTAATATTGTT	638	False	NA	9	True	AATAAA	-16	NA	122988234	123007008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_122988362_123002049_123002458_123004864_123004970_123005182_123005385_123006099
transcript_45115.known	chr5	+	2164	12	FSM	ENSMUSG00000054434.15	ENSMUST00000067505.15	2164	12	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_3	11.7768508046945	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCCCTGCCCAGCCTGC	NA	False	NA	NA	False	NA	NA	NA	123214337	123255812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_123214559_123236237_123236357_123237899_123238017_123239687_123239748_123240316_123240413_123242484_123242575_123252164_123252231_123252630_123252693_123253162_123253256_123253723_123253789_123254264_123254334_123254706
transcript_45117.known	chr5	+	2597	6	FSM	ENSMUSG00000029440.16	ENSMUST00000100729.9	2597	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	18.6868938028769	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCCTCTTGGGATCAGC	NA	False	NA	NA	False	TTTAAA	-13	NA	123366252	123388194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_123366508_123372656_123372760_123377604_123377814_123379894_123379997_123384256_123384346_123386355
transcript_45119.nnic	chr5	+	858	5	NIC	ENSMUSG00000029440.16	novel	2597	6	NA	NA	32	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	81.8183964643649	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACGTCTTGTGCAAATTA	NA	False	NA	17	True	ATTAAA	-18	NA	123366284	123386590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_123366508_123377604_123377814_123379894_123379997_123384256_123384346_123386355
transcript_4512.known	chr10	-	1660	9	FSM	ENSMUSG00000000902.14	ENSMUST00000000925.10	1660	9	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_7	283.203990084886	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGCAGTAGCATAAAACTG	6861	False	NA	-2	True	AATAAA	-20	NA	75757451	75732602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752606_75752746_75757136
transcript_45120.nnic	chr5	+	1293	5	NIC	ENSMUSG00000029440.16	novel	2597	6	NA	NA	32	435	combination_of_known_splicesites	FALSE	canonical	3	15	junction_1	81.8183964643649	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGCTGTCAGTATATTC	NA	False	NA	23	True	NA	NA	NA	123366284	123387025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_123366508_123377604_123377814_123379894_123379997_123384256_123384346_123386355
transcript_45122.known	chr5	+	774	1	FSM	ENSMUSG00000029440.16	ENSMUST00000196137.2	774	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	123366320	123367094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_123366300_123367100
transcript_45123.known	chr5	+	735	5	FSM	ENSMUSG00000029440.16	ENSMUST00000197809.2	735	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	82.7930401664294	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACGTCTTGTGCAAATTA	NA	False	NA	17	True	ATTAAA	-18	NA	123372656	123386590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_123372760_123377604_123377814_123379894_123379997_123384259_123384346_123386355
transcript_45124.known	chr5	+	4718	6	FSM	ENSMUSG00000029438.10	ENSMUST00000031391.9	4718	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	4.53431361950185	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACGAATTGTAATGTAAATAA	NA	False	NA	NA	False	NA	NA	NA	123482510	123513055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_123482785_123489929_123490012_123494003_123494101_123499253_123499422_123507395_123507518_123509080
transcript_45128.known	chr5	-	1576	6	FSM	ENSMUSG00000029433.17	ENSMUST00000111587.10	1576	6	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_3	53.1902246658162	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGTTTTCAGAATTGTT	8922	False	NA	-12	True	AATAAA	-25	NA	123662239	123649767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_123650771_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
transcript_4513.known	chr10	-	1622	9	FSM	ENSMUSG00000000902.14	ENSMUST00000121304.2	1622	9	0	0	0	0	multi-exon	FALSE	canonical	3	799	junction_7	118.779206934547	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTTCTGTGCAGTAGCA	6864	False	NA	-10	True	AATAAA	-12	NA	75757448	75732610	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_75732923_75733278_75733411_75740217_75740409_75741863_75742031_75745987_75746116_75747352_75747491_75750897_75751028_75752633_75752746_75757136
transcript_45131.known	chr5	-	719	6	FSM	ENSMUSG00000029433.17	ENSMUST00000111586.8	719	6	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	270.536208297522	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTCAGAGAAAAATCTTAA	8965	False	NA	NA	False	ATTAAA	-14	NA	123662196	123654326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_123654516_123655799_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
transcript_45132.known	chr5	-	1663	5	FSM	ENSMUSG00000029433.17	ENSMUST00000139398.8	1663	5	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_2	57.6649807075317	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCAGTTTTCAGAATTGTT	8956	False	NA	-12	True	AATAAA	-25	NA	123662205	123649767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_123650771_123655799_123656129_123658103_123658236_123661317_123661445_123662133
transcript_45136.known	chr5	-	681	5	FSM	ENSMUSG00000029433.17	ENSMUST00000031385.7	681	5	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_2	56.3493566955294	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCATAACATTATTTCCTT	8965	False	NA	NA	False	NA	NA	NA	123662196	123655648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_123655897_123656017_123656129_123658103_123658236_123661317_123661445_123662133
transcript_45138.known	chr5	-	4235	13	FSM	ENSMUSG00000029434.13	ENSMUST00000031388.13	4235	13	0	0	0	0	multi-exon	TRUE	canonical	3	140	junction_1	30.3840007240653	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGGCCCTGCCGGCCTGAC	10000	False	NA	NA	False	AAAAAG	-3	NA	123711101	123666721	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_123669285_123669887_123670057_123671920_123672059_123673276_123673415_123674595_123674664_123685064_123685192_123696676_123696877_123701488_123701664_123703021_123703139_123707482_123707670_123708917_123709046_123709539_123709606_123710942
transcript_45140.nic	chr5	-	1259	8	NIC	ENSMUSG00000029434.13	novel	532	6	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	74.1113337885533	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGGTGTGTTCCTATGTAA	9986	False	NA	NA	False	ATTAAA	-18	NA	123711082	123692827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_123693074_123696676_123696877_123701488_123701664_123703021_123703139_123707482_123707670_123708917_123709046_123709539_123709606_123710942
transcript_45141.known	chr5	-	4286	14	FSM	ENSMUSG00000029427.12	ENSMUST00000031376.12	4286	14	0	0	0	0	multi-exon	FALSE	non_canonical	2	263	junction_13	50.4357344906314	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTGTATCCAAGTTCCT	6397	False	NA	NA	False	AATAAA	-13	NA	123859107	123836364	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_123839186_123840625_123840744_123841055_123841143_123842585_123842705_123845331_123845475_123846054_123846198_123846634_123846696_123847257_123847324_123847444_123847549_123852128_123852207_123852687_123852794_123855046_123855122_123857554_123857596_123858783
transcript_45150.known	chr5	-	2344	12	FSM	ENSMUSG00000029422.16	ENSMUST00000050827.14	2344	12	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_7	200.336700053759	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATTGTATGCTATTTGC	4346	False	NA	NA	False	AATAAA	-15	NA	123887452	123866488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
transcript_45153.nic	chr5	-	2047	12	NIC	ENSMUSG00000029422.16	novel	2344	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_7	199.263561501216	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTGGTGTTAATTTAAG	4323	False	NA	-8	True	AATAAA	-13	NA	123887475	123866786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123880841_123880920_123881700_123881742_123883017_123883175_123883559_123883653_123887351
transcript_45157.known	chr5	-	1685	11	FSM	ENSMUSG00000029422.16	ENSMUST00000182955.8	1685	11	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_10	161.696753214157	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATTTTTTAGTTCATGA	4364	False	NA	NA	False	ATTAAA	-22	NA	123887434	123867029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123883559_123883653_123887351
transcript_45158.known	chr5	-	2270	11	FSM	ENSMUSG00000029422.16	ENSMUST00000057795.12	2270	11	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_7	167.947640650293	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGTCCATTGTATGCTAT	4323	False	NA	NA	False	AATAAA	-11	NA	123887475	123866492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878948_123880841_123880920_123881700_123881742_123883017_123883175_123887351
transcript_45164.known	chr5	-	1595	10	FSM	ENSMUSG00000029422.16	ENSMUST00000182309.8	1595	10	0	0	0	0	multi-exon	FALSE	canonical	3	403	junction_7	46.2523939987681	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACCCACTTCCATTAAAC	4321	False	NA	NA	False	NA	NA	NA	123887477	123867069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_123867420_123868517_123868608_123869099_123869333_123871618_123871699_123874621_123874745_123877554_123877759_123878734_123878926_123881700_123881742_123883017_123883175_123887351
transcript_45172.known	chr5	-	2071	4	FSM	ENSMUSG00000029422.16	ENSMUST00000182612.2	2071	4	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_3	208.439173115057	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	CCAAAAAAAAAAAAAAAAAA	4354	False	NA	NA	False	NA	NA	NA	123887444	123880013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_123881742_123883017_123883175_123883559_123883653_123887351
transcript_45173.known	chr5	-	1980	3	FSM	ENSMUSG00000029422.16	ENSMUST00000183253.8	1980	3	0	0	0	0	multi-exon	FALSE	canonical	3	434	junction_2	57.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4354	False	NA	NA	False	NA	NA	NA	123887444	123880011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_123881742_123883017_123883175_123887351
transcript_45176.known	chr5	+	347	2	FSM	ENSMUSG00000029414.12	ENSMUST00000199838.2	347	2	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACCCGTGTCTTCTTAG	NA	False	NA	NA	False	NA	NA	NA	123887778	123892123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_123887888_123891885
transcript_45179.nnic	chr5	+	1185	9	NNC	ENSMUSG00000023106.16	novel	2339	8	NA	NA	-24	459	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_2	669.883758573083	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGATTTTTTTTTTTCTCTT	9048	False	NA	11	True	AATAAA	-20	NA	124045307	124065655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_124045430_124046162_124046278_124046446_124046606_124053253_124053274_124055262_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
transcript_4518.known	chr10	-	1793	9	FSM	ENSMUSG00000000901.18	ENSMUST00000120281.8	1793	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	51.1639521538358	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	5083	False	NA	-3	True	ATTAAA	-17	NA	75768309	75759055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_75759325_75759792_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
transcript_45181.known	chr5	+	2339	8	FSM	ENSMUSG00000023106.16	ENSMUST00000023869.15	2339	8	0	0	0	0	multi-exon	FALSE	canonical	3	1477	junction_4	100.760982082372	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTCGCTAACTGAATTTG	8978	False	NA	NA	False	AATGAA	-2	NA	124045237	124066898	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124045430_124046162_124046278_124053253_124053274_124055262_124055348_124060242_124060327_124062793_124062911_124065060_124065201_124065312
transcript_45189.known	chr5	+	622	3	FSM	ENSMUSG00000061882.13	ENSMUST00000166983.3	622	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTGTGTGTGTTCTGTCCA	NA	False	NA	NA	False	ATTAAA	-27	NA	124068751	124074708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124068924_124072134_124072328_124074451
transcript_45190.known	chr5	+	474	2	FSM	ENSMUSG00000023106.16	ENSMUST00000171639.2	474	2	0	0	0	0	multi-exon	FALSE	canonical	3	1559	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTTGTTGGAAGCTAAGG	9085	False	NA	NA	False	NA	NA	NA	124045344	124046551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124045430_124046162
transcript_45191.known	chr5	+	6735	32	FSM	ENSMUSG00000000915.16	ENSMUST00000000939.15	6735	32	0	0	0	0	multi-exon	TRUE	canonical	3	34	junction_6	6.64046185222248	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGAGTATCTTTTTTTCT	NA	False	NA	NA	False	AGTAAA	-3	NA	124111690	124143621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124111919_124127367_124127432_124127653_124127797_124127999_124128057_124129004_124129086_124129500_124129578_124129806_124129869_124132780_124132922_124133958_124134017_124134101_124134178_124134293_124134435_124134582_124134645_124134833_124134907_124134993_124135178_124135266_124135356_124135426_124135544_124135613_124135716_124135920_124136116_124136848_124136997_124137104_124137192_124137545_124137654_124137833_124137971_124138202_124138314_124138408_124138468_124138664_124138696_124138774_124138838_124139054_124139156_124139268_124139375_124139487_124139612_124139693_124139756_124139850_124140058_124140180
transcript_45192.known	chr5	-	2522	4	FSM	ENSMUSG00000066278.7	ENSMUST00000040967.9	2522	4	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_3	15.8394724940223	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGCTGTGTTTCTCTCAT	2236	False	NA	-1	True	AATAAA	-20	NA	124170333	124142703	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_124144802_124145671_124145755_124148750_124148923_124170164
transcript_45195.known	chr5	+	1596	7	FSM	ENSMUSG00000023707.14	ENSMUST00000024470.13	1596	7	0	0	0	0	multi-exon	TRUE	canonical	3	59	junction_5	17.423642940939	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGTTTGCTATTATTTAA	NA	False	NA	12	True	TATAAA	-17	NA	124250359	124253546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127_124252256_124252450_124252709_124252777
transcript_45197.known	chr5	+	1474	7	FSM	ENSMUSG00000023707.14	ENSMUST00000119269.6	1474	7	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_5	31.3421973277773	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACCCCTCTGTTTGCTAT	NA	False	NA	5	True	TATAAA	-10	NA	124250383	124253539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252127_124252256_124252541_124252709_124252777
transcript_45199.known	chr5	+	818	6	FSM	ENSMUSG00000023707.14	ENSMUST00000198770.2	818	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	30.8506077735918	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGACTTGAGCCTGGTTC	NA	False	NA	-93	True	NA	NA	NA	124250493	124253030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124250530_124250851_124250909_124251280_124251395_124251491_124251592_124252450_124252709_124252777
transcript_45202.nic	chr5	+	1027	6	NIC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_1	229.659399981799	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	24	True	ATTAAA	-17	NA	124254137	124256259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_124254308_124254496_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
transcript_45203.known	chr5	+	1192	5	FSM	ENSMUSG00000029404.16	ENSMUST00000031351.11	1192	5	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_1	46.874833333037	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	24	True	ATTAAA	-17	NA	124254161	124256259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124254675_124254977_124255257_124255333_124255452_124255892_124255963_124256047
transcript_45204.nnic	chr5	+	1163	5	NNC	ENSMUSG00000029404.16	novel	1192	5	NA	NA	-22	0	intron_retention	FALSE	canonical	3	22	junction_1	256.087265399902	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCCTGTTGTGTTGCATTT	NA	False	NA	24	True	ATTAAA	-17	NA	124254129	124256259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_124254675_124255038_124255257_124255333_124255452_124255892_124255963_124256047
transcript_45205.known	chr5	+	982	5	FSM	ENSMUSG00000029404.16	ENSMUST00000122394.8	982	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	259.116286635943	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCAGGTGCCTTTCCTACAG	NA	False	NA	-76	True	NA	NA	NA	124254184	124256159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124254588_124254977_124255257_124255333_124255452_124255892_124255963_124256047
transcript_4521.known	chr10	-	2288	8	FSM	ENSMUSG00000000901.18	ENSMUST00000000924.13	2288	8	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_3	14.5349683908307	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGCCTGTCTGTTTTTCTTT	5056	False	NA	-3	True	ATTAAA	-17	NA	75768336	75759055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_75759950_75761253_75761512_75762244_75762462_75762581_75762824_75762962_75763097_75763180_75763325_75764113_75764344_75768167
transcript_45212.known	chr5	+	1677	3	FSM	ENSMUSG00000047635.7	ENSMUST00000077376.3	1677	3	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	7.5	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATCGAGGAAGCTGTGG	5398	False	NA	17	True	NA	NA	NA	124466160	124479907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124466293_124476689_124476999_124478671
transcript_45213.known	chr5	+	1637	2	FSM	ENSMUSG00000047635.7	ENSMUST00000111477.2	1637	2	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTCCTGAGTTTAATTCC	5389	False	NA	NA	False	NA	NA	NA	124466151	124478185	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124466293_124476689
transcript_45214.nic	chr5	-	5614	31	NIC	ENSMUSG00000038095.16	novel	10161	32	NA	NA	-12	1370	combination_of_known_junctions	TRUE	canonical	3	243	junction_29	68.980423954111	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGAAGTGGACTCTTGTTTAG	NA	False	NA	NA	False	AATAAA	-17	NA	124563685	124511224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_124512735_124514160_124514355_124516532_124516610_124517347_124517486_124519571_124519665_124519745_124519841_124519921_124520069_124522529_124522605_124524892_124524993_124525381_124525454_124525539_124525653_124526587_124526724_124529984_124530117_124530636_124530813_124530901_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124552461_124552591_124563509
transcript_45215.nic	chr5	-	2547	18	NIC	ENSMUSG00000038095.16	novel	2413	17	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_15	129.531762547456	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGATCCAGATTCCATT	NA	False	NA	NA	False	NA	NA	NA	124563685	124531012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548443_124551247_124551353_124552461_124552591_124563509
transcript_45216.nic	chr5	-	2540	18	NIC	ENSMUSG00000038095.16	novel	2511	18	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_17	160.591101030237	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGATCCAGATTCCATT	NA	False	NA	NA	False	NA	NA	NA	124564078	124531012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548443_124551247_124551353_124552461_124552591_124563909
transcript_45217.nic	chr5	-	2550	18	ISM	ENSMUSG00000038095.16	ENSMUST00000199808.5	10161	32	-12	24242	-12	0	5prime_fragment	FALSE	canonical	3	126	junction_15	113.969157486276	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGATCCAGATTCCATT	NA	False	NA	NA	False	NA	NA	NA	124563685	124531012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563509
transcript_45218.known	chr5	-	2511	18	FSM	ENSMUSG00000038095.16	ENSMUST00000196644.5	2511	18	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_17	149.186374694419	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAAAAAGAAGAAAAGT	NA	False	NA	NA	False	NA	NA	NA	124564064	124531030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124551247_124551353_124552461_124552591_124563909
transcript_45219.known	chr5	-	2413	17	FSM	ENSMUSG00000038095.16	ENSMUST00000200474.5	2413	17	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_15	101.972863271314	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGATCCAGATTCCATT	NA	False	NA	NA	False	NA	NA	NA	124563656	124531012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548443_124552461_124552591_124563509
transcript_45220.nic	chr5	-	2438	17	NIC	ENSMUSG00000038095.16	novel	2511	18	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_16	125.514379156334	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATAGATCCAGATTCCATT	NA	False	NA	NA	False	NA	NA	NA	124564078	124531012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_124531070_124531863_124532059_124533957_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124552461_124552591_124563909
transcript_45224.nic	chr5	-	2165	15	NIC	ENSMUSG00000038095.16	novel	2100	15	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	243	junction_13	72.8199134572293	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAATAAAATAAAGAA	NA	False	NA	NA	False	NA	NA	NA	124563685	124533985	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124552461_124552591_124563509
transcript_45225.known	chr5	-	2100	15	FSM	ENSMUSG00000038095.16	ENSMUST00000196329.5	2100	15	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_14	133.161556013738	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAGAAAATAAAATAAAGAA	NA	False	NA	NA	False	NA	NA	NA	124564020	124533985	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_124534110_124536474_124536573_124538066_124538250_124538770_124538925_124539024_124539131_124539203_124539340_124540124_124540287_124542022_124542114_124542251_124542386_124543631_124543793_124545153_124545251_124546539_124546641_124548132_124548446_124552461_124552591_124563909
transcript_45227.known	chr5	-	1391	4	FSM	ENSMUSG00000029401.9	ENSMUST00000031347.8	1391	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	3.55902608401044	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAACGCATGTGTATCCAA	NA	False	NA	48	True	AATAAA	-24	NA	124616429	124601327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_124601875_124606649_124606755_124607760_124607913_124615842
transcript_45229.known	chr5	+	1115	2	FSM	ENSMUSG00000029402.9	ENSMUST00000031349.9	1115	2	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	0	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTGAGGTGGGGTTTGT	2220	False	NA	10	True	AATAAA	-24	NA	124621196	124629187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124621310_124628185
transcript_45230.known	chr5	+	449	2	FSM	ENSMUSG00000029402.9	ENSMUST00000136567.2	449	2	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCGTGGACTATGAGCTAG	2288	False	NA	NA	False	NA	NA	NA	124621264	124628553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124621346_124628185
transcript_45231.known	chr5	+	1181	2	FSM	ENSMUSG00000029402.9	ENSMUST00000111453.2	1181	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTCCCTTTCTCACACCT	2544	False	NA	-7	True	AATAAA	-7	NA	124621520	124629170	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124621717_124628185
transcript_45232.known	chr5	-	2249	7	FSM	ENSMUSG00000029392.13	ENSMUST00000062153.12	2249	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	6.39661368746516	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTCCTGTGTGCCTTT	NA	False	NA	2	True	NA	NA	NA	124669454	124631142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_124631908_124639902_124639996_124641617_124641797_124652581_124652807_124653580_124653700_124659313_124659465_124668737
transcript_45233.known	chr5	+	2074	4	FSM	ENSMUSG00000029390.14	ENSMUST00000060226.11	2074	4	0	0	0	0	multi-exon	FALSE	canonical	3	3477	junction_2	89.3395520223577	72	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGTTTTATATTAATG	NA	False	NA	12	True	AATAAA	-22	NA	124678757	124688569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124679105_124681034_124681228_124684958_124685067_124687143
transcript_45236.known	chr5	+	2799	14	FSM	ENSMUSG00000029389.18	ENSMUST00000071057.14	2799	14	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_5	12.5669803088427	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATCATTTTTTTTCTCC	NA	False	NA	5	True	AATAAA	-18	NA	124690926	124707723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124691103_124692605_124692657_124692733_124692821_124694819_124694912_124695024_124695088_124696084_124696235_124697190_124697381_124698780_124698864_124699968_124700101_124700652_124700746_124704443_124704559_124704896_124705066_124705897_124706191_124706618
transcript_4524.known	chr10	-	714	7	FSM	ENSMUSG00000050157.7	ENSMUST00000219979.2	714	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	8.23441288469042	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGCCCCCCCCCCACTC	4977	False	NA	NA	False	NA	NA	NA	75776445	75774009	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_75774191_75774995_75775166_75775239_75775315_75775546_75775673_75775764_75775852_75776227_75776255_75776397
transcript_45243.nic	chr5	-	1780	9	NIC	ENSMUSG00000029388.15	novel	2013	9	NA	NA	-9	-440	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	291.131172111473	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACGGTATTGCCTCTCTA	NA	False	NA	-5	True	AATAAA	-17	NA	124717104	124708715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_124709418_124709823_124709950_124711140_124711217_124711748_124711818_124712660_124712774_124714860_124714978_124715078_124715216_124716499_124716602_124716766
transcript_45249.known	chr5	+	2672	13	FSM	ENSMUSG00000029387.11	ENSMUST00000031333.4	2672	13	0	0	0	0	multi-exon	FALSE	canonical	3	570	junction_1	79.1684210331928	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTTTTGTTGTTGTTGAA	NA	False	NA	NA	False	AATAAA	-17	NA	124717202	124735743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124717265_124720510_124720591_124721996_124722104_124722198_124722366_124726687_124726751_124727433_124727464_124728412_124728442_124728931_124729007_124730543_124730598_124732825_124732895_124733615_124733752_124733865_124733903_124733980
transcript_45255.known	chr5	+	2735	18	FSM	ENSMUSG00000118662.2	ENSMUST00000239501.2	2735	18	0	0	0	0	multi-exon	TRUE	canonical	3	31	junction_8	6.97499240366195	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGATGATGGTGGTGATGGT	NA	False	NA	NA	False	ATTAAA	-16	NA	124736811	124765803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124737020_124737197_124737306_124737769_124737847_124740077_124740274_124741810_124741912_124745798_124745996_124746581_124746706_124748332_124748475_124750706_124750773_124753213_124753349_124754531_124754610_124757093_124757172_124758176_124758289_124761069_124761177_124762380_124762538_124763745_124763872_124763959_124764049_124765169
transcript_45260.nic	chr5	+	1105	7	ISM	ENSMUSG00000118662.2	ENSMUST00000239505.1	2913	17	20200	280	20157	-280	3prime_fragment	FALSE	canonical	3	40	junction_1	5.79271573232759	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCCTAGTGTTAAGTGAACG	NA	False	NA	34	True	AATAAA	-24	NA	124757011	124765523	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_124757172_124758176_124758289_124761069_124761177_124762380_124762538_124763745_124763872_124763959_124764049_124765169
transcript_45263.known	chr5	+	5345	20	FSM	ENSMUSG00000038023.13	ENSMUST00000037865.13	5345	20	0	0	0	0	multi-exon	TRUE	canonical	3	142	junction_14	17.8821937464506	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTAGTTTTCTTGTGAT	NA	False	NA	10	True	AATAAA	-21	NA	124767116	124801519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124767356_124770817_124770897_124773952_124774051_124775423_124775562_124777132_124777222_124779407_124779535_124782904_124782988_124783884_124783979_124784543_124784757_124789272_124789424_124789764_124789902_124790144_124790333_124790431_124790523_124791177_124791297_124793368_124793580_124794949_124795070_124795502_124795623_124796112_124796231_124796914_124797087_124798761
transcript_45265.nic	chr5	+	1316	7	ISM	ENSMUSG00000038023.13	ENSMUST00000198382.5	3526	20	23943	91	-133	-91	3prime_fragment	FALSE	canonical	3	142	junction_1	19.5163748910726	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTTAAAGTTATTTTTTAAA	NA	False	NA	NA	False	AATATA	-18	NA	124791072	124799112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_124791297_124793368_124793580_124794949_124795070_124795502_124795623_124796112_124796231_124796914_124797087_124798761
transcript_45266.known	chr5	+	4092	4	FSM	ENSMUSG00000079215.9	ENSMUST00000111417.9	4092	4	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_3	10.2089285540757	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATGTTTCCTGTGTGGT	NA	False	NA	8	True	NA	NA	NA	124939754	124965694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_124939947_124940417_124940573_124961771_124961837_124962014
transcript_45268.known	chr5	-	2521	13	FSM	ENSMUSG00000037936.16	ENSMUST00000086075.13	2521	13	0	0	0	0	multi-exon	TRUE	canonical	3	188	junction_1	171.680966232913	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTGGCTTCTGTGACTGTT	NA	False	NA	-1	True	AATAAA	-21	NA	125418158	125354150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_125354930_125358168_125358298_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
transcript_45269.known	chr5	-	2367	12	FSM	ENSMUSG00000037936.16	ENSMUST00000111390.8	2367	12	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_1	58.8981471316135	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTGGCTTCTGTGACTG	NA	False	NA	-3	True	AATAAA	-19	NA	125418135	125354152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_125354930_125360962_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
transcript_45270.known	chr5	-	2082	11	FSM	ENSMUSG00000037936.16	ENSMUST00000148373.8	2082	11	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_7	41.8812607260097	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAATAATCAAAAAT	NA	False	NA	NA	False	NA	NA	NA	125418083	125360418	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_125361110_125361744_125361797_125364422_125364497_125366700_125366820_125371061_125371229_125374289_125374406_125375696_125375793_125377400_125377605_125380145_125380288_125381258_125381417_125417820
transcript_45271.nic	chr5	-	1139	4	ISM	ENSMUSG00000037936.16	ENSMUST00000111390.8	2367	12	53550	0	-844	0	3prime_fragment	FALSE	canonical	3	487	junction_1	96.6413760019773	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTGGCTTCTGTGACTG	NA	False	NA	-3	True	AATAAA	-19	NA	125364585	125354152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_125354930_125360962_125361110_125361744_125361797_125364422
transcript_45273.known	chr5	-	4760	27	FSM	ENSMUSG00000029480.14	ENSMUST00000169485.6	4760	27	0	0	0	0	multi-exon	TRUE	canonical	3	122	junction_21	17.4191708985502	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGACTATGCTCTTGATC	NA	False	NA	NA	False	AGTAAA	-16	NA	125511185	125490921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_125492231_125492364_125492463_125492929_125493004_125493087_125493183_125493363_125493502_125493595_125493711_125494485_125494659_125495513_125495631_125495722_125495848_125496024_125496214_125496297_125496405_125498071_125498184_125499182_125499416_125499668_125499746_125500490_125500636_125501688_125501766_125502002_125502099_125502485_125502601_125502735_125502838_125503714_125503829_125504496_125504594_125505377_125505471_125506225_125506375_125506768_125507109_125507882_125507996_125508660_125508831_125510998
transcript_45275.known	chr5	+	745	4	FSM	ENSMUSG00000037905.14	ENSMUST00000198811.2	745	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	166.423823080979	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTGACCGCTCCAAGGA	NA	False	NA	NA	False	NA	NA	NA	125518813	125531790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_125518957_125528733_125528837_125529211_125529310_125531389
transcript_45276.known	chr5	+	6473	3	FSM	ENSMUSG00000037905.14	ENSMUST00000049040.14	6473	3	0	0	0	0	multi-exon	FALSE	canonical	3	373	junction_1	23.5	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTCCTGGATGGATTTCTT	NA	False	NA	30	True	AATAAA	-22	NA	125518631	125537434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_125518957_125528733_125528837_125531389
transcript_45277.known	chr5	+	3239	18	FSM	ENSMUSG00000029482.5	ENSMUST00000031445.5	3239	18	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_4	14.7470013373196	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGTACGCGTGTGTTTCTC	NA	False	NA	10	True	AATAAA	-27	NA	125552877	125594474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_125553174_125559893_125559998_125561600_125561722_125566846_125566961_125571970_125572069_125580246_125580362_125580612_125580695_125583212_125583361_125585740_125585822_125586842_125586968_125588703_125588769_125588909_125589033_125589688_125589803_125590165_125590292_125590982_125591053_125591232_125591292_125591991_125592195_125593279
transcript_45279.known	chr5	+	3413	12	FSM	ENSMUSG00000049971.18	ENSMUST00000118139.3	3413	12	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_6	12.1383212585269	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATCTGGCTTGAATTGG	8701	False	NA	NA	False	NA	NA	NA	127709325	127786438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_127709416_127721382_127721532_127727746_127727853_127734150_127734203_127740405_127740443_127741715_127741773_127754268_127754365_127755154_127755205_127766900_127766945_127768053_127768175_127771290_127771390_127783926
transcript_45289.nnic	chr5	+	826	7	NNC	ENSMUSG00000049971.18	novel	1713	11	NA	NA	-90	-22133	at_least_one_novel_splicesite	TRUE	canonical	3	16	junction_6	12.7986544431653	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTTGTCTTGGTCATGGTG	8611	False	NA	NA	False	NA	NA	NA	127709235	127744802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_127709416_127721382_127721532_127727746_127727853_127734150_127734203_127740405_127740443_127741715_127741773_127744557
transcript_45291.nic	chr5	+	330	3	ISM	ENSMUSG00000049971.18	ENSMUST00000137157.8	1713	11	-18	41147	-18	-39116	5prime_fragment	FALSE	canonical	3	42	junction_2	9	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGTCATGGGGAAAGTTC	8683	False	NA	NA	False	AAGAAA	-5	NA	127709307	127727819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_127709416_127721382_127721532_127727746
transcript_45294.nnic	chr5	-	683	3	NNC	ENSMUSG00000072591.11	novel	2429	6	NA	NA	-1330	0	intron_retention	FALSE	canonical	1	4	junction_2	4	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGTCTGTCCTTCCAGAT	NA	False	NA	NA	False	AATAAA	-36	NA	128679087	128656169	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_128656350_128662335_128662471_128678719
transcript_45297.known	chr5	+	2377	7	FSM	ENSMUSG00000029430.14	ENSMUST00000031383.14	2377	7	0	0	0	0	multi-exon	FALSE	canonical	3	11744	junction_1	1335.32560531962	4269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTGAGTCATCTCTAGT	342	False	NA	21	True	AATATA	-23	NA	129097132	129101387	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_129097343_129097591_129097639_129097747_129097833_129097929_129098056_129099066_129099255_129099438_129099610_129099837
transcript_4530.known	chr10	+	939	4	FSM	ENSMUSG00000049422.8	ENSMUST00000058906.7	939	4	0	0	0	0	multi-exon	FALSE	canonical	3	15821	junction_1	833.259196702256	1227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGTTTACTTTAGACCA	6946	False	NA	1	True	NA	NA	NA	75771406	75773559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_75771839_75772071_75772280_75773140_75773289_75773408
transcript_45314.nic	chr5	+	3194	12	ISM	ENSMUSG00000044017.17	ENSMUST00000056617.14	5163	26	65843	0	65836	0	3prime_fragment	FALSE	canonical	3	43	junction_2	8.40306909693916	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAGAGTCTTGAGCGTCACA	4620	False	NA	29	True	AATAAA	-17	NA	129239656	129281663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_129239733_129248869_129248994_129255112_129255217_129256232_129256345_129256606_129256761_129265389_129265457_129266696_129266764_129275681_129275774_129277743_129277871_129278195_129278238_129278519_129278613_129279527
transcript_45315.known	chr5	-	441	1	FSM	ENSMUSG00000060419.9	ENSMUST00000140155.2	441	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCATCTCAAGGATCGGGG	NA	False	NA	NA	False	NA	NA	NA	129205581	129205140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_129205100_129205600
transcript_45320.known	chr5	+	3313	18	FSM	ENSMUSG00000029439.15	ENSMUST00000053737.9	3313	18	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_11	20.649823847033	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGGGGCTCTCCTTCTTC	NA	False	NA	16	True	AATAAA	-29	NA	129578284	129648448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_129578661_129581046_129581217_129581826_129581959_129584207_129584294_129590110_129590337_129591816_129591930_129593079_129593216_129616638_129616880_129618389_129618519_129619102_129619197_129620277_129620444_129626517_129626749_129627760_129627952_129631506_129631773_129637743_129637870_129646704_129646879_129647539_129647613_129648065
transcript_45322.nnic	chr5	+	567	3	NIC	ENSMUSG00000034211.15	novel	5061	4	NA	NA	1	0	combination_of_known_splicesites	FALSE	canonical	3	55	junction_1	423.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAGATTCTCTGAACTGAA	755	False	NA	39	True	AGTAAA	-34	NA	129792561	129795354	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_129792614_129793790_129793931_129794979
transcript_45324.known	chr5	+	832	4	FSM	ENSMUSG00000034211.15	ENSMUST00000042191.12	832	4	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_1	196.309845793724	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTTTGGCAGCTTGATTTT	760	False	NA	23	True	CATAAA	-12	NA	129792566	129795544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_129792614_129792747_129792828_129793790_129793931_129794979
transcript_45325.known	chr5	+	1208	4	FSM	ENSMUSG00000034211.15	ENSMUST00000119604.8	1208	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	359.259732722101	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTGGCCTGTTTTGTTGT	773	False	NA	NA	False	NA	NA	NA	129792579	129795755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_129792614_129792747_129793006_129793790_129793931_129794979
transcript_45326.known	chr5	+	859	3	FSM	ENSMUSG00000034211.15	ENSMUST00000119985.2	859	3	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_1	192.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCTTTTGATAATGACATA	834	False	NA	-10	True	AAGAAA	-35	NA	129792640	129795511	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_129792828_129793790_129793931_129794979
transcript_45327.known	chr5	+	1600	11	FSM	ENSMUSG00000029432.13	ENSMUST00000124342.8	1600	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	114.750555554211	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGATGTCTAATTTTTAC	7803	False	NA	12	True	AATAAA	-18	NA	129802162	129835314	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_129802286_129816535_129816676_129816781_129816828_129821768_129821864_129822279_129822351_129823390_129823532_129825065_129825098_129830289_129830385_129831905_129831990_129834142_129834317_129834715
transcript_45329.known	chr5	+	2112	10	FSM	ENSMUSG00000029432.13	ENSMUST00000086046.10	2112	10	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_9	37.917389085507	263	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTTGCACGATTGAGACC	7767	False	NA	18	True	AATAAA	-17	NA	129802126	129835391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_129802286_129816535_129816676_129816781_129816828_129821768_129821864_129822279_129822351_129823390_129823532_129825065_129825098_129830289_129830385_129831905_129831990_129834142
transcript_45340.known	chr5	+	2588	14	FSM	ENSMUSG00000029447.14	ENSMUST00000201414.5	2588	14	0	0	0	0	multi-exon	TRUE	canonical	3	3618	junction_3	465.957308149311	2740	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACACTTGAAATGACTGAAA	NA	False	NA	38	True	AATAAA	-30	NA	129864061	129875212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_129864640_129865297_129865362_129866116_129866252_129866880_129867055_129867647_129867752_129868532_129868644_129868845_129869006_129869082_129869166_129870698_129870796_129871414_129871563_129872181_129872316_129873810_129873914_129874423_129874497_129874588
transcript_45358.known	chr5	-	1733	8	FSM	ENSMUSG00000029446.15	ENSMUST00000031399.13	1733	8	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_7	460.03695503731	1398	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTCAGTAGTTTTAAGTGA	8757	False	NA	-2	True	ATTAAA	-22	NA	129864513	129842621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_129842963_129843482_129843632_129846302_129846449_129847669_129847805_129848539_129848697_129856085_129856313_129856425_129856509_129864018
transcript_4536.known	chr10	+	405	2	FSM	ENSMUSG00000049422.8	ENSMUST00000219435.2	405	2	0	0	0	0	multi-exon	FALSE	canonical	3	16591	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCTGCTGTGTGCCCAT	8593	False	NA	20	True	ATTAAA	-17	NA	75773053	75773578	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_75773289_75773408
transcript_45366.known	chr5	+	1656	10	FSM	ENSMUSG00000025538.16	ENSMUST00000137357.5	1656	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	198.480213275098	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTTATTTATTTATTAT	NA	False	NA	16	True	AATAAA	-16	NA	129875860	129892273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_129875928_129878741_129878899_129881714_129881827_129882863_129882909_129883304_129883349_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129891479
transcript_45368.known	chr5	+	2264	9	FSM	ENSMUSG00000025538.16	ENSMUST00000171300.8	2264	9	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_6	14.1371629049113	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTTCTGCCTATCACGGT	NA	False	NA	NA	False	AATACA	-17	NA	129875826	129892891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_129875928_129878741_129878899_129881714_129881827_129882863_129882909_129883528_129883680_129887080_129887137_129888677_129888763_129888910_129889056_129891479
transcript_4537.known	chr10	-	1221	7	FSM	ENSMUSG00000050157.7	ENSMUST00000059658.6	1221	7	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	10.6991692304694	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATAATTATGTCTCCTGT	4916	False	NA	NA	False	AGTAAA	-42	NA	75776506	75773556	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_75774191_75774995_75775166_75775239_75775315_75775553_75775673_75775764_75775852_75776227_75776255_75776397
transcript_45390.known	chr5	+	2492	4	FSM	ENSMUSG00000034173.14	ENSMUST00000041466.14	2492	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_3	2120.04764097414	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCTGTCTCAAAAAAAATTT	6005	False	NA	NA	False	AATAAA	-17	NA	129924563	129932464	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_129924694_129928023_129928274_129929185_129929337_129930503
transcript_45395.known	chr5	-	915	4	FSM	ENSMUSG00000070493.4	ENSMUST00000094280.4	915	4	0	0	0	0	multi-exon	FALSE	canonical	3	5311	junction_3	452.984424554409	8258	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTAGCGTCCTTATTGT	2064	False	NA	-3	True	AATAAA	-18	NA	129916311	129909996	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_129910238_129911269_129911421_129912774_129913025_129916038
transcript_45396.known	chr5	+	3112	3	FSM	ENSMUSG00000066735.9	ENSMUST00000051758.11	3112	3	0	0	0	0	multi-exon	FALSE	canonical	3	775	junction_1	60.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTTGTGTTTTATTTGG	NA	False	NA	44	True	AATATA	-17	NA	129970810	130013587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_129971207_130007359_130007470_130010981
transcript_45398.known	chr5	+	650	3	FSM	ENSMUSG00000066735.9	ENSMUST00000073945.6	650	3	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	420.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CACCGAGCCAATCAAAGACA	NA	False	NA	NA	False	AAAAAG	-5	NA	129970967	130011420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_129971069_130007359_130007470_130010981
transcript_45399.known	chr5	-	2687	12	FSM	ENSMUSG00000025534.18	ENSMUST00000026613.14	2687	12	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_6	16.6092675514317	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTCTTTCGTTACTATC	NA	False	NA	NA	False	NA	NA	NA	130031890	130017851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_130018529_130018857_130018994_130022258_130022436_130024287_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767_130028911_130029201_130029384_130029597_130029784_130031447
transcript_4540.nic	chr10	+	1858	6	ISM	ENSMUSG00000033255.9	ENSMUST00000099577.4	2838	14	39290	0	19718	0	3prime_fragment	FALSE	canonical	2	3	junction_3	1.89736659610103	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCAGGTGTCTTGAAGTG	NA	False	NA	9	True	AATAAA	-22	NA	75829637	75845425	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_75829767_75831613_75831765_75836222_75836392_75840528_75840745_75841823_75841927_75844335
transcript_45400.nnic	chr5	-	2493	12	NNC	ENSMUSG00000025534.18	novel	2687	12	NA	NA	-7	0	at_least_one_novel_splicesite	TRUE	canonical	1	3	junction_3	35.8578460586654	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTCTTTCGTTACTATC	NA	False	NA	NA	False	NA	NA	NA	130031729	130017851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_130018529_130018857_130018994_130022258_130022436_130024320_130024373_130026620_130026768_130026857_130027037_130027250_130027395_130028181_130028370_130028767_130028911_130029201_130029384_130029597_130029784_130031447
transcript_45405.known	chr5	-	2038	4	FSM	ENSMUSG00000025534.18	ENSMUST00000111308.8	2038	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	11.5854314646552	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	130031706	130027499	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_130028911_130029201_130029384_130029597_130029784_130031447
transcript_45406.known	chr5	-	932	3	FSM	ENSMUSG00000025534.18	ENSMUST00000111307.2	932	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	55.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTTCGCTATTGTCTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	130031722	130028439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_130028911_130029597_130029784_130031447
transcript_45408.nic	chr5	-	1628	17	NIC	ENSMUSG00000025533.16	novel	2413	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	7	junction_16	77.2141654345237	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAGCATATGCTTCTGC	NA	False	NA	-10	True	AATAAA	-21	NA	130053186	130040344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882_130052938_130053048
transcript_45409.known	chr5	-	1824	17	FSM	ENSMUSG00000025533.16	ENSMUST00000161094.8	1824	17	0	0	0	0	multi-exon	FALSE	canonical	1	102	junction_3	46.3975686324187	260	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGGAGAGATGTGTCAGT	NA	False	NA	NA	False	CATAAA	-21	NA	130053222	130040098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_130040542_130040705_130040813_130040890_130040972_130041497_130041582_130041837_130041898_130042009_130042095_130042241_130042357_130042803_130042867_130043519_130043573_130044937_130045016_130045136_130045215_130047150_130047249_130047388_130047446_130047673_130047758_130048502_130048698_130052882_130052938_130053134
transcript_4541.nnic	chr10	-	1994	15	NNC	ENSMUSG00000020226.10	novel	3202	15	NA	NA	-4524	-1130	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	4.04817923294422	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTAAATGACCGGGAAATGT	NA	False	NA	NA	False	TATAAA	-18	NA	75951319	75894457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_75894734_75896182_75896289_75898047_75898264_75899787_75899957_75906337_75906489_75908261_75908370_75910813_75910950_75917149_75917371_75925739_75925821_75926512_75926619_75939657_75939763_75942540_75942601_75944331_75944437_75945851_75945924_75951237
transcript_45414.known	chr5	+	1492	6	FSM	ENSMUSG00000025532.14	ENSMUST00000026608.11	1492	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_4	51.2382669496149	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTGCCACCATACCTGG	NA	False	NA	5	True	AAAACA	-1	NA	130058130	130089630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545
transcript_45418.known	chr5	+	669	6	FSM	ENSMUSG00000025532.14	ENSMUST00000156729.2	669	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	131.765549367048	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCTGACCCCCTCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	130058183	130088773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_130058336_130063752_130063790_130066660_130066760_130071046_130071142_130077766_130077825_130088545
transcript_45420.known	chr5	+	931	5	FSM	ENSMUSG00000025532.14	ENSMUST00000202163.4	931	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_3	138.212472302611	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACCTAATGTGCATGCATG	NA	False	NA	NA	False	NA	NA	NA	130058142	130089176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130077766_130077825_130088545
transcript_45423.known	chr5	+	600	4	FSM	ENSMUSG00000025532.14	ENSMUST00000202756.2	600	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	182.915280936285	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGGGGTAGAAAGGCTTG	NA	False	NA	NA	False	GGGGCT	-26	NA	130058151	130088912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_130058249_130063752_130063790_130066660_130066760_130088545
transcript_45424.known	chr5	+	2690	9	FSM	ENSMUSG00000025340.15	ENSMUST00000119797.8	2690	9	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_3	33.6962535009458	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGTTTTGTTTTGTTTCTG	NA	False	NA	21	True	AATAAA	-43	NA	130200638	130243183	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_130200736_130216241_130216428_130219717_130219885_130226790_130226958_130235849_130235932_130237526_130237660_130239264_130239357_130240702_130240960_130241674
transcript_45428.known	chr5	+	3607	7	FSM	ENSMUSG00000053094.16	ENSMUST00000065329.13	3607	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	200.953283681114	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGTATCCCCGGCCATG	6426	False	NA	113	True	NA	NA	NA	130248584	130272606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_130248761_130258289_130258468_130260595_130260882_130265643_130265795_130267087_130267272_130269188_130269333_130270118
transcript_4543.known	chr10	-	2016	11	FSM	ENSMUSG00000020230.16	ENSMUST00000020452.12	2016	11	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	2.63818119165458	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCATTTTGTTCTGTTTCT	NA	False	NA	NA	False	AATAAA	-18	NA	76073671	76043060	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_76043628_76044245_76044418_76045171_76045309_76046231_76046362_76053147_76053324_76056831_76056997_76058282_76058445_76061121_76061305_76062023_76062150_76072545_76072656_76073583
transcript_45438.known	chr5	-	1548	5	FSM	ENSMUSG00000025337.11	ENSMUST00000026387.11	1548	5	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_4	74.8765650921568	455	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCTTGCATTTCTAGT	NA	False	NA	0	True	AATAAA	-17	NA	130284371	130274571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_130275303_130277126_130277292_130279654_130279856_130282779_130282910_130284050
transcript_4544.known	chr10	-	2052	11	FSM	ENSMUSG00000020230.16	ENSMUST00000099571.10	2052	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_10	3.8262252939418	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGTTCTGTTTCTGTGCC	NA	False	NA	NA	False	AATAAA	-23	NA	76073699	76043055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_76043628_76044245_76044418_76045171_76045309_76046231_76046362_76053147_76053324_76056831_76056997_76058282_76058445_76061121_76061305_76062023_76062150_76072545_76072659_76073583
transcript_45446.nic	chr5	+	2560	16	NIC	ENSMUSG00000056310.15	novel	4698	9	NA	NA	-54	-406	combination_of_known_junctions	FALSE	canonical	3	48	junction_1	68.4530658350831	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGGCTTTGTCCTTAC	3458	False	NA	20	True	AATAAA	-23	NA	130284405	130369998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_130284487_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
transcript_45447.known	chr5	+	3044	16	FSM	ENSMUSG00000056310.15	ENSMUST00000040213.13	3044	16	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_10	31.6406208676266	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGACATGTTCCCATGCTT	4928	False	NA	NA	False	AATAAA	-17	NA	130285875	130370404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621_130310675_130316083_130316203_130317693_130317804_130325464_130325643_130328744_130328881_130354439_130354551_130364086_130364255_130369459
transcript_4545.nic	chr10	+	4330	23	ISM	ENSMUSG00000001150.8	ENSMUST00000170795.3	6427	29	11940	0	-251	0	3prime_fragment	FALSE	canonical	3	162	junction_1	37.3435303124698	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCCGCCTTAGTTTTATGA	NA	False	NA	12	True	AATAAA	-18	NA	76316700	76351691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_76316975_76318457_76318656_76318948_76319218_76320487_76320651_76324175_76324337_76325168_76325411_76325701_76325902_76326561_76326663_76328694_76328827_76329263_76329378_76332241_76332395_76335289_76335488_76336895_76336965_76337043_76337179_76338485_76338640_76339996_76340256_76340463_76340562_76342131_76342523_76343123_76343382_76344131_76344262_76346853_76347058_76348251_76348403_76351415
transcript_45452.nic	chr5	+	1321	9	ISM	ENSMUSG00000056310.15	ENSMUST00000040213.13	3044	16	-1	59687	-1	-3510	5prime_fragment	FALSE	canonical	3	266	junction_8	28.1724599564894	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTATTTTTGTCCATT	4927	False	NA	NA	False	NA	NA	NA	130285874	130310717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461_130303585_130306773_130306892_130310621
transcript_45454.nic	chr5	+	1309	7	ISM	ENSMUSG00000056310.15	ENSMUST00000100662.10	1867	8	-1	2804	-1	-2804	5prime_fragment	FALSE	canonical	3	273	junction_6	27.5479380151925	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTCTGCACTTTGTGT	4927	False	NA	NA	False	ATTAAA	-17	NA	130285874	130303786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_130286035_130287773_130287896_130291659_130291783_130295823_130295926_130296735_130296931_130298006_130298289_130303461
transcript_45455.known	chr5	+	414	1	FSM	ENSMUSG00000058905.6	ENSMUST00000145209.2	414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	538	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCACACGCCCGAAGCAA	NA	False	NA	NA	False	NA	NA	NA	133503961	133504375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_133504000_133504400
transcript_45456.known	chr5	-	2321	11	FSM	ENSMUSG00000061979.9	ENSMUST00000076228.3	2321	11	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_2	26.6850145212627	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGACTTGATCATTTCTT	NA	False	NA	4	True	AATAAA	-42	NA	134205613	134176892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_134177846_134182962_134183049_134184578_134184753_134186429_134186518_134192462_134192645_134194177_134194263_134195503_134195556_134197050_134197118_134198056_134198186_134200685_134200816_134205238
transcript_45459.known	chr5	-	4302	33	FSM	ENSMUSG00000060261.17	ENSMUST00000173341.9	4302	33	0	0	0	0	multi-exon	TRUE	canonical	3	192	junction_8	74.2225788486058	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAACTCATTCTTTTCCTG	661	False	NA	-8	True	AATAAA	-26	NA	134343574	134266692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_134267747_134268350_134268426_134269096_134269139_134269726_134269769_134270984_134271014_134271457_134271642_134271761_134271846_134272360_134272454_134272754_134272811_134273547_134273732_134273970_134274037_134275363_134275466_134275674_134275750_134276072_134276132_134278695_134278880_134280719_134280792_134283866_134283926_134284678_134284863_134289420_134289493_134290696_134290756_134292438_134292623_134294590_134294657_134295396_134295511_134303392_134303450_134308290_134308369_134311640_134311685_134312047_134312103_134315548_134315578_134315713_134315898_134318140_134318276_134322600_134322740_134324363_134324468_134343236
transcript_4546.known	chr10	-	4522	5	FSM	ENSMUSG00000033126.6	ENSMUST00000049185.6	4522	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	3.63145976158349	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTCTCTCGTGATTCCT	NA	False	NA	NA	False	NA	NA	NA	76304948	76295400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_76299154_76300090_76300160_76302070_76302200_76303990_76304221_76304607
transcript_45462.known	chr5	-	3572	31	FSM	ENSMUSG00000023079.15	ENSMUST00000073161.12	3572	31	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_9	54.133743840808	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAAGCGTCACTTTTTTTT	NA	False	NA	NA	False	AGTAAA	-16	NA	134485542	134386514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134395689_134395771_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
transcript_45464.known	chr5	-	3461	30	FSM	ENSMUSG00000023079.15	ENSMUST00000111244.5	3461	30	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_29	53.0244374146404	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCACTTTTTTTTCCCCT	NA	False	NA	NA	False	AGTAAA	-21	NA	134485110	134386509	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134484965
transcript_45465.known	chr5	-	3524	30	FSM	ENSMUSG00000023079.15	ENSMUST00000171794.9	3524	30	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_8	45.8592169193566	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGTCACTTTTTTTTCCCCT	NA	False	NA	NA	False	AGTAAA	-21	NA	134485570	134386509	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_134386751_134387841_134387973_134389091_134389130_134389807_134390001_134390522_134390601_134391364_134391403_134392035_134392229_134392755_134392834_134404960_134404990_134405747_134405932_134408790_134408875_134411383_134411441_134411634_134411685_134412593_134412778_134413872_134413939_134414643_134414692_134417287_134417378_134417984_134418066_134418527_134418566_134419675_134419785_134421248_134421275_134424470_134424655_134430964_134431049_134432585_134432676_134433509_134433821_134437980_134438165_134439807_134439964_134443988_134444131_134445906_134446036_134485362
transcript_4547.nic	chr10	-	363	2	ISM	ENSMUSG00000033126.6	ENSMUST00000049185.6	4522	5	253	8545	2	-747	5prime_fragment	FALSE	canonical	3	38	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTTCTTCTCGTACAG	NA	False	NA	NA	False	NA	NA	NA	76304695	76303945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_76304221_76304607
transcript_45470.known	chr5	+	4995	11	FSM	ENSMUSG00000023104.10	ENSMUST00000023867.8	4995	11	0	0	0	0	multi-exon	FALSE	canonical	3	1115	junction_7	96.2091991443646	608	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATATGATTTGTCTTCCTG	NA	False	NA	NA	False	ATTAAA	-22	NA	134611543	134630659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_134611741_134615751_134615822_134617785_134617828_134618208_134618316_134619729_134619832_134619972_134620074_134622042_134622201_134623062_134623129_134624136_134624218_134625735_134625850_134626702
transcript_45477.known	chr5	-	2726	7	FSM	ENSMUSG00000040731.14	ENSMUST00000202622.4	2726	7	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_3	647.667803224256	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAACCTCTAAAGAAGAAAC	9878	False	NA	NA	False	NA	NA	NA	134668344	134648574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_134650503_134650802_134650941_134653294_134653355_134654219_134654317_134654394_134654460_134656441_134656630_134668094
transcript_45479.known	chr5	-	2367	6	FSM	ENSMUSG00000040731.14	ENSMUST00000036125.10	2367	6	0	0	0	0	multi-exon	FALSE	canonical	3	1750	junction_2	182.920310517996	444	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTATGCTTGTCTTTCTGG	10021	False	NA	-4	True	AATAAA	-18	NA	134668201	134648730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_134650503_134650802_134650941_134654219_134654317_134654394_134654460_134656441_134656630_134668094
transcript_45480.known	chr5	-	896	4	FSM	ENSMUSG00000040731.14	ENSMUST00000200874.2	896	4	0	0	0	0	multi-exon	FALSE	canonical	3	2106	junction_3	61.0482504981829	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCGTCCTAGATAGGGGT	2225	False	NA	NA	False	NA	NA	NA	134668156	134653735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_134654317_134654394_134654460_134656441_134656630_134668094
transcript_45483.nic	chr5	+	1222	7	NIC	ENSMUSG00000040557.15	novel	2808	6	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_6	36.2583323756991	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGACCAGTGTGTACTGTAA	3395	False	NA	4	True	NA	NA	NA	134961204	134970086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_134961265_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310_134969548_134969745
transcript_45486.known	chr5	+	2808	6	FSM	ENSMUSG00000040557.15	ENSMUST00000047196.14	2808	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	28.2460616723819	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTTTTTTACATTTATAT	3412	False	NA	NA	False	AATAAA	-23	NA	134961221	134971491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_134961265_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
transcript_45488.known	chr5	+	1790	6	FSM	ENSMUSG00000040557.15	ENSMUST00000111219.8	1790	6	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	38.8947297201048	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAATAGAAAGTAAAGAGA	3417	False	NA	NA	False	NA	NA	NA	134961226	134970577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_134961265_134961574_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
transcript_45490.known	chr5	+	721	6	FSM	ENSMUSG00000040557.15	ENSMUST00000201847.3	721	6	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	40.4791304254427	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATGATGGCTTCATCTCTG	3568	False	NA	NA	False	NA	NA	NA	134961377	134969488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_134961436_134961574_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
transcript_45492.known	chr5	+	1387	6	FSM	ENSMUSG00000040557.15	ENSMUST00000111218.8	1387	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	38.4988311510882	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAGAAAAAAAATAAAAATA	3436	False	NA	16	True	NA	NA	NA	134961245	134970056	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_134961303_134961475_134961702_134962326_134962456_134963142_134963279_134964632_134964726_134969310
transcript_45494.known	chr5	-	1816	1	FSM	ENSMUSG00000047501.4	ENSMUST00000051401.4	1816	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	498	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCTGTTCTCTATCTGTG	NA	False	NA	-9	True	AATAAA	-25	NA	134975788	134973972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_134974000_134975800
transcript_45495.known	chr5	+	1259	1	FSM	ENSMUSG00000070473.5	ENSMUST00000094245.4	1259	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCGCTGGAGCTTCCTTAT	5041	False	NA	38	True	AATAAA	-18	NA	135015067	135016326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_135015100_135016300
transcript_45498.known	chr5	+	972	6	FSM	ENSMUSG00000040532.15	ENSMUST00000111216.8	972	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	236.865024855929	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCCAACACTTTTAATGAAT	NA	False	NA	-29	True	NA	NA	NA	135038005	135040985	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_135038070_135038835_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
transcript_455.nnic	chr1	-	846	4	Intergenic	novelGene_1	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_3	28.3901391331568	16	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCTTTGTGAGATCTTT	NA	False	NA	-6	True	ATTAAA	-16	NA	21326790	21323508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Intergenic_chr1_-_21323669_21324392_21324563_21326110_21326225_21326388
transcript_45501.known	chr5	+	1493	6	FSM	ENSMUSG00000040532.15	ENSMUST00000046999.12	1493	6	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_1	65.8634952003004	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATCCGTTTTCACCACCGT	NA	False	NA	15	True	AATAAA	-22	NA	135038152	135041029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_135038694_135038835_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
transcript_45507.known	chr5	-	604	4	FSM	ENSMUSG00000085042.9	ENSMUST00000136022.8	604	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	14.0079342596338	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTCCGTGCCCCTGAGT	NA	False	NA	0	True	ATTAAA	-29	NA	135042107	135040967	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_135041187_135041283_135041405_135041547_135041643_135041938
transcript_4551.known	chr10	+	4667	22	FSM	ENSMUSG00000033105.13	ENSMUST00000048678.7	4667	22	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_9	27.7651309078683	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATCAGATTGATTTATTT	NA	False	NA	NA	False	AATACA	-20	NA	76367440	76391313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_76367509_76367683_76367853_76369346_76369486_76371392_76371502_76372077_76372200_76374185_76374283_76375618_76375755_76376145_76376255_76376679_76376799_76377652_76377751_76378301_76378330_76379684_76379742_76380298_76380371_76381284_76381336_76381895_76382046_76382596_76382694_76383268_76383375_76385053_76385120_76385636_76385718_76386418_76386590_76388153_76388233_76388770
transcript_45510.known	chr5	-	594	3	FSM	ENSMUSG00000085042.9	ENSMUST00000154060.2	594	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	17	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGGACCCTCTCCGTGC	NA	False	NA	-8	True	ATTAAA	-21	NA	135042008	135040975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_135041405_135041547_135041643_135041938
transcript_45511.known	chr5	+	1473	5	FSM	ENSMUSG00000040532.15	ENSMUST00000154469.8	1473	5	0	0	0	0	multi-exon	FALSE	canonical	3	552	junction_3	34.8926926447358	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	10	True	AATAAA	-17	NA	135038309	135041024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_135038972_135039740_135039915_135040063_135040235_135040337_135040520_135040740
transcript_45512.known	chr5	+	1475	3	FSM	ENSMUSG00000040532.15	ENSMUST00000149778.2	1475	3	0	0	0	0	multi-exon	FALSE	canonical	3	589	junction_1	28.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGGATCCGTTTTCACC	NA	False	NA	10	True	AATAAA	-17	NA	135038559	135041024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_135038972_135039740_135040520_135040740
transcript_45514.known	chr5	+	2167	10	FSM	ENSMUSG00000007207.11	ENSMUST00000150838.2	2167	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	7.53428378140653	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGCCTCTGTTTGGAACA	NA	False	NA	15	True	AATAAA	-15	NA	135052413	135079954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_135052465_135065979_135066058_135066329_135066430_135070090_135070166_135070784_135070859_135070962_135071072_135071446_135071521_135074450_135074589_135077764_135077959_135078680
transcript_45520.known	chr5	-	1516	13	FSM	ENSMUSG00000005378.18	ENSMUST00000085984.11	1516	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	290.243898873574	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTGTCCCTGGCCCTGCA	NA	False	NA	-1	True	ATTAAA	-16	NA	135093520	135081810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_135082279_135082402_135082493_135084881_135084941_135085192_135085239_135085695_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135089926_135090010_135090102_135090199_135092737_135092776_135092867_135093030_135093377
transcript_45521.known	chr5	-	826	11	FSM	ENSMUSG00000005378.18	ENSMUST00000202478.4	826	11	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_8	311.111491269609	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGAGAGTGGGAGCTGCC	NA	False	NA	NA	False	NA	NA	NA	135092893	135082138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_135082279_135082402_135082493_135084881_135084941_135085192_135085239_135085695_135085782_135086473_135086525_135087960_135088058_135089587_135089685_135090102_135090199_135092737_135092776_135092867
transcript_45525.known	chr5	+	7488	7	FSM	ENSMUSG00000005374.14	ENSMUST00000153183.8	7488	7	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_3	17.4610678049451	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGTGAGCCGTCAAATCAT	9490	False	NA	NA	False	AATAAA	-10	NA	135178510	135194614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_135178719_135181788_135181911_135183167_135183353_135185221_135185374_135186385_135186513_135187457_135187611_135188073
transcript_45526.known	chr5	+	1758	6	FSM	ENSMUSG00000029681.13	ENSMUST00000031692.12	1758	6	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_5	29.6445610525776	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACAGCTTCTTTCTACA	8669	False	NA	29	True	ATTAAA	-24	NA	135197136	135210709	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_135197453_135199940_135200017_135205982_135206080_135208803_135208975_135209369_135209450_135209691
transcript_45528.nnic	chr5	+	1675	6	NNC	ENSMUSG00000029681.13	novel	907	3	NA	NA	431	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	100.312711058968	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACAGCTTCTTTCTACA	9262	False	NA	29	True	ATTAAA	-24	NA	135197729	135210709	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_135197963_135199940_135200017_135205982_135206080_135208803_135208975_135209369_135209450_135209691
transcript_45529.known	chr5	+	564	3	FSM	ENSMUSG00000029681.13	ENSMUST00000111187.10	564	3	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	118	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTAAAGTGTCTATTTTTG	8775	False	NA	NA	False	AAAACA	-3	NA	135197242	135202302	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_135197453_135199940_135200017_135202024
transcript_45535.known	chr5	-	1235	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201784.4	1235	8	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_7	331.894438590566	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAGTCATTAGTGTGACA	NA	False	NA	-3	True	ATTAAA	-24	NA	135378729	135366219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378672
transcript_45536.known	chr5	-	1447	9	FSM	ENSMUSG00000040013.12	ENSMUST00000044972.11	1447	9	0	0	0	0	multi-exon	FALSE	canonical	3	793	junction_1	94.8445273856114	544	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCAGTACAATTCATTG	NA	False	NA	-1	True	AATAAA	-20	NA	135378898	135320557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_135320966_135366468_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378788
transcript_45537.known	chr5	-	1297	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201791.4	1297	8	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	339.384075967639	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATGCAGTACAATTCATTG	NA	False	NA	-1	True	AATAAA	-20	NA	135378868	135320557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_135320966_135366468_135366562_135368331_135368442_135368775_135368971_135374943_135375147_135376730_135376821_135378471_135378590_135378788
transcript_45538.known	chr5	-	1287	8	FSM	ENSMUSG00000040013.12	ENSMUST00000201534.2	1287	8	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_1	63.5022095067951	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAAGTCATTAGTGTGACA	NA	False	NA	-3	True	ATTAAA	-24	NA	135378897	135366219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_135366562_135368331_135368442_135368775_135368971_135373502_135373623_135374943_135375147_135376730_135376821_135378471_135378590_135378788
transcript_45539.nnic	chr5	+	1995	7	NNC	ENSMUSG00000053388.11	novel	1803	6	NA	NA	-1409	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	2.86744175568088	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCCTGTGCTTCCCAACTTG	NA	False	NA	NA	False	AATAAA	-4	NA	135380739	135396859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_135380916_135382136_135382549_135387708_135387805_135392581_135392813_135392903_135392927_135395394_135395520_135395927
transcript_4554.known	chr10	-	4100	35	FSM	ENSMUSG00000001119.8	ENSMUST00000001147.5	4100	35	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	13.9481553641435	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGCCTCTTTATCTACA	8442	False	NA	0	True	AATAAA	-15	NA	76562002	76544625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_76546016_76546179_76546210_76546795_76546974_76547116_76547301_76547408_76547519_76548101_76548236_76548698_76548708_76549018_76549056_76549459_76549496_76549706_76549773_76549947_76550011_76550247_76550284_76550491_76550543_76550828_76550892_76551104_76551168_76552094_76552158_76552552_76552616_76552962_76552999_76553095_76553150_76553233_76553297_76553628_76553692_76553892_76553947_76554206_76554252_76554350_76554378_76554812_76554840_76554958_76555004_76555456_76555511_76556794_76556840_76556921_76556943_76557096_76557118_76557236_76557366_76557649_76557810_76559209_76559411_76560772_76560903_76561653
transcript_45541.nnic	chr5	+	1728	11	NNC	ENSMUSG00000000916.16	novel	2243	10	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_5	113.163421652051	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGATCACAGTTTTATT	NA	False	NA	18	True	AATAAA	-18	NA	135398789	135404997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402104_135402228_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
transcript_45544.known	chr5	+	2243	10	FSM	ENSMUSG00000000916.16	ENSMUST00000000940.15	2243	10	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_9	22.1966519552993	240	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAAATGTTTAAATATTT	NA	False	NA	NA	False	AATAAA	-12	NA	135398806	135405652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_135398931_135399044_135399168_135400094_135400270_135400351_135400461_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
transcript_45548.nnic	chr5	+	1611	10	NNC	ENSMUSG00000000916.16	novel	2243	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	90.1288515212704	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAGATCACAGTTTTATT	NA	False	NA	18	True	AATAAA	-18	NA	135398806	135404997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_135398931_135399021_135399168_135400094_135400270_135400351_135400461_135402807_135402947_135403037_135403154_135403780_135403960_135404128_135404340_135404408_135404553_135404729
transcript_45557.nic	chr5	-	1600	13	NIC	ENSMUSG00000039959.14	novel	1625	14	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	2	166	junction_11	29.2616311157727	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCAATTAGAATTTGTT	9581	False	NA	NA	False	AATAAA	-15	NA	135518141	135464968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_135465364_135467388_135467487_135468875_135469017_135469102_135469179_135473588_135473647_135478537_135478679_135480427_135480490_135481653_135481731_135483918_135484000_135485892_135485950_135486953_135487097_135489260_135489325_135517934
transcript_45559.known	chr5	+	4363	5	FSM	ENSMUSG00000039917.11	ENSMUST00000136748.6	4363	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	101.030626544628	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGGCATGGCC	NA	False	NA	NA	False	NA	NA	NA	135661507	135675302	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_135661773_135663957_135664078_135664848_135665257_135667943_135668095_135671883
transcript_45561.known	chr5	+	4207	4	FSM	ENSMUSG00000039917.11	ENSMUST00000043707.7	4207	4	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_1	25.703436864876	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGGCTCAGTGAATAAAGT	NA	False	NA	NA	False	AATAAA	-23	NA	135661471	135675230	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_135661773_135664848_135665257_135667943_135668095_135671883
transcript_45563.nic	chr5	+	2519	16	NIC	ENSMUSG00000005514.15	novel	918	8	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	64.9938116712319	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCTGGTGTTGATTGAG	1618	False	NA	14	True	AATAAA	-14	NA	135698870	135764180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_135698971_135744725_135744918_135757515_135757565_135758252_135758382_135759082_135759233_135759697_135759823_135759946_135760037_135760416_135760516_135761336_135761454_135761539_135761659_135762355_135762538_135762626_135762777_135762880_135763152_135763236_135763383_135763474_135763561_135763666
transcript_45564.known	chr5	+	2636	16	FSM	ENSMUSG00000005514.15	ENSMUST00000005651.13	2636	16	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_9	23.2776478384069	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCTGGTGTTGATTGAG	1901	False	NA	14	True	AATAAA	-14	NA	135717889	135764180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_135718107_135744725_135744918_135757515_135757565_135758252_135758382_135759082_135759233_135759697_135759823_135759946_135760037_135760416_135760516_135761336_135761454_135761539_135761659_135762355_135762538_135762626_135762777_135762880_135763152_135763236_135763383_135763474_135763561_135763666
transcript_45567.known	chr5	-	1559	12	FSM	ENSMUSG00000039886.9	ENSMUST00000043378.9	1559	12	0	0	0	0	multi-exon	FALSE	canonical	3	674	junction_10	35.0345756018723	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATGGACTGTGGATGTG	5063	False	NA	-4	True	AATAAA	-21	NA	135773302	135764338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_135764660_135764750_135764820_135764923_135764989_135765107_135765201_135765294_135765357_135765450_135765517_135765599_135765690_135765771_135765868_135766043_135766104_135770819_135770937_135771134_135771254_135772901
transcript_45578.known	chr5	+	1456	9	FSM	ENSMUSG00000019179.11	ENSMUST00000019323.11	1456	9	0	0	0	0	multi-exon	FALSE	canonical	3	4657	junction_8	277.596267085853	1932	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTGTAGATTTCCTTT	453	False	NA	38	True	AGTAAA	-25	NA	135807333	135819245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_135807656_135812158_135812328_135813037_135813122_135814782_135814893_135815086_135815213_135816394_135816473_135818054_135818155_135818479_135818632_135818930
transcript_45581.known	chr5	+	903	3	FSM	ENSMUSG00000004951.11	ENSMUST00000005077.7	903	3	0	0	0	0	multi-exon	FALSE	canonical	3	2181	junction_2	11	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTGACTCCAGAGTTATTA	NA	False	NA	7	True	AATAAA	-25	NA	135916772	135918417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_135917289_135917902_135917967_135918094
transcript_45583.known	chr5	-	3520	2	FSM	ENSMUSG00000051391.10	ENSMUST00000055808.6	3520	2	0	0	0	0	multi-exon	FALSE	canonical	3	925	junction_1	0	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGGCGGTGCCCAGCTTC	NA	False	NA	-26	True	AATAAA	-14	NA	135963453	135937262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_135940506_135963176
transcript_45584.known	chr5	-	417	2	FSM	ENSMUSG00000051391.10	ENSMUST00000126192.2	417	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCTTCCTGAATTCTTAGAG	NA	False	NA	NA	False	NA	NA	NA	135963404	135959614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_135959804_135963176
transcript_45585.known	chr5	-	2238	2	FSM	ENSMUSG00000051391.10	ENSMUST00000129581.2	2238	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGGAGTCCATGTCTGAT	NA	False	NA	NA	False	ATTAAA	-14	NA	135963451	135959533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_135961497_135963176
transcript_45586.known	chr5	-	685	3	FSM	ENSMUSG00000051391.10	ENSMUST00000126639.2	685	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGCAGCTGGAGTCCATGT	NA	False	NA	NA	False	ATTAAA	-9	NA	135963470	135959538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_135959804_135961370_135961497_135963176
transcript_45587.known	chr5	-	1191	3	FSM	ENSMUSG00000029699.14	ENSMUST00000054895.4	1191	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	7	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTTTTAACTGAGGTCAT	NA	False	NA	-8	True	AATAAA	-15	NA	135991181	135989077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_135990063_135990742_135990821_135991053
transcript_45588.known	chr5	+	1323	8	FSM	ENSMUSG00000004948.13	ENSMUST00000005073.13	1323	8	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_4	3.97953950776689	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGTGTGGTTTAATG	NA	False	NA	NA	False	AATAAA	-13	NA	136008952	136017478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_136009297_136011492_136011612_136013015_136013120_136013201_136013386_136014398_136014517_136016108_136016201_136016325_136016463_136017253
transcript_45589.known	chr5	+	2650	11	FSM	ENSMUSG00000004947.16	ENSMUST00000111142.9	2650	11	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_6	35.5758344947803	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTGGGAAGTTTTGTGT	8459	False	NA	16	True	AATAAA	-21	NA	136023653	136061726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_136023821_136025143_136025307_136038867_136039211_136040864_136041502_136050608_136050713_136055323_136055462_136057352_136057427_136057917_136058077_136059333_136059496_136060039_136060130_136061113
transcript_4559.known	chr10	-	2013	16	FSM	ENSMUSG00000001120.16	ENSMUST00000001148.11	2013	16	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	18.4407760742931	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGCTCTGACTTCTCTCTG	1236	False	NA	-3	True	AATAAA	-18	NA	76797622	76597690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_76598361_76599055_76599226_76603697_76603751_76606093_76606154_76606794_76606874_76617665_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
transcript_45590.known	chr5	+	2493	10	FSM	ENSMUSG00000004947.16	ENSMUST00000111145.10	2493	10	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	18.5279235376575	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTGCATCTGTTGGGAAG	8470	False	NA	8	True	AATAAA	-13	NA	136023664	136061718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_136023821_136025143_136025307_136038867_136039211_136040864_136041502_136050608_136050713_136057352_136057427_136057917_136058077_136059333_136059496_136060039_136060130_136061113
transcript_45591.known	chr5	+	671	4	FSM	ENSMUSG00000006143.13	ENSMUST00000139549.2	671	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCATCTTACATATACCTG	4809	False	NA	NA	False	AATAAA	-20	NA	136088901	136093164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_136089136_136090036_136090114_136090360_136090482_136092925
transcript_45592.known	chr5	+	2914	21	FSM	ENSMUSG00000004952.14	ENSMUST00000042135.14	2914	21	0	0	0	0	multi-exon	TRUE	canonical	3	36	junction_7	10.6273232754067	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGAGGTGTTGGGTTGGG	2152	False	NA	NA	False	AATAAA	-20	NA	136112769	136140714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_136113032_136118206_136118264_136120047_136120162_136120601_136120664_136121991_136122122_136124380_136124463_136125514_136125647_136127541_136127634_136129755_136129874_136130097_136130249_136130478_136130544_136130798_136130912_136131088_136131282_136131381_136131520_136132133_136132279_136132690_136132861_136133369_136133508_136134457_136134594_136135924_136136046_136140105_136140171_136140284
transcript_45596.known	chr5	-	2473	15	FSM	ENSMUSG00000029703.11	ENSMUST00000006301.11	2473	15	0	0	0	0	multi-exon	FALSE	canonical	3	342	junction_8	23.380722043284	207	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTCCTTCTTGCTTGTCCT	6684	False	NA	NA	False	NA	NA	NA	136164928	136151625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_136152170_136152256_136152367_136152453_136152610_136152720_136152813_136159074_136159216_136159316_136159390_136159827_136160036_136160306_136160417_136160965_136161081_136161159_136161283_136161828_136161934_136162158_136162300_136162787_136162905_136163352_136163588_136164725
transcript_45609.known	chr5	+	646	4	FSM	ENSMUSG00000039771.14	ENSMUST00000041366.14	646	4	0	0	0	0	multi-exon	FALSE	canonical	3	1103	junction_2	77.5471182930453	523	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGCAGTGTGTGGACTG	9212	False	NA	30	True	AATAAA	-19	NA	136145484	136151801	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_136145660_136148848_136148939_136150942_136151118_136151595
transcript_45610.known	chr5	+	474	3	FSM	ENSMUSG00000039771.14	ENSMUST00000111129.2	474	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	632.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAAATGGGGCTGTGCAG	9283	False	NA	19	True	AATAAA	-8	NA	136145555	136151790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_136145660_136150942_136151118_136151595
transcript_45611.known	chr5	+	1773	3	FSM	ENSMUSG00000039754.11	ENSMUST00000041100.4	1773	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	0.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGAATTTCTCCTTTTCC	NA	False	NA	NA	False	AATAAA	-23	NA	136165007	136170466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_136165149_136168191_136168390_136169032
transcript_45612.nnic	chr5	+	1693	3	NNC	ENSMUSG00000039754.11	novel	557	3	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	29.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTTCTCCTTTTCCCAT	NA	False	NA	NA	False	AATAAA	-26	NA	136164999	136170469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_136165149_136168282_136168390_136169032
transcript_45613.known	chr5	+	557	3	FSM	ENSMUSG00000039754.11	ENSMUST00000136634.8	557	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	26.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCTCCTAGCAGGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	136164999	136169366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_136165149_136168315_136168390_136169032
transcript_45616.known	chr5	-	3893	6	FSM	ENSMUSG00000039737.12	ENSMUST00000151786.8	3893	6	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_2	42.6164287569946	458	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACTTTTGGTTAGTGTTT	NA	False	NA	-3	True	NA	NA	NA	136227817	136206980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_136210351_136218405_136218474_136220753_136220840_136223150_136223252_136226633_136226713_136227628
transcript_4562.nic	chr10	-	1250	11	ISM	ENSMUSG00000001120.16	ENSMUST00000001148.11	2013	16	-163	19869	-64	8077	5prime_fragment	FALSE	canonical	3	104	junction_6	11.0742945599257	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGTTTTCTCCATGTCTCC	1073	False	NA	NA	False	NA	NA	NA	76797785	76617559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_76617708_76620973_76621049_76624224_76624354_76625571_76625704_76633628_76633746_76634460_76634494_76635362_76635387_76636593_76636749_76661693_76661827_76728390_76728491_76797581
transcript_45621.known	chr5	-	2831	23	FSM	ENSMUSG00000029705.18	ENSMUST00000176745.8	2831	23	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_13	14.4244970693081	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGTCTTTTATTCTGTG	NA	False	NA	-1	True	AATAAA	-18	NA	136596118	136276988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_136277835_136278021_136278087_136279377_136279459_136280224_136280282_136281396_136281481_136282920_136283038_136285085_136285199_136285653_136285721_136286766_136286895_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355787_136361477_136361583_136368942_136368992_136388855_136388923_136392112_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436882_136514594_136514706_136596031
transcript_45622.known	chr5	-	2821	23	FSM	ENSMUSG00000029705.18	ENSMUST00000176216.9	2821	23	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_13	19.9470373118581	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGTCTTTTATTCTGTG	NA	False	NA	-1	True	AATAAA	-18	NA	136596102	136276988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_136277835_136278021_136278087_136279377_136279459_136280224_136280282_136281396_136281481_136282920_136283038_136285085_136285199_136285653_136285721_136286766_136286895_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355793_136361477_136361583_136368942_136368992_136388855_136388923_136392112_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436882_136514594_136514706_136596031
transcript_45623.nic	chr5	-	2958	23	NIC	ENSMUSG00000029705.18	novel	2831	23	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	2	13	junction_13	22.7204080541869	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGTCTTTTATTCTGTG	NA	False	NA	-1	True	AATAAA	-18	NA	136596167	136276988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_136277835_136278021_136278087_136279377_136279459_136280224_136280282_136281396_136281481_136282920_136283038_136285085_136285199_136285653_136285721_136286766_136286895_136343160_136343258_136344852_136344902_136348634_136348694_136355603_136355865_136361477_136361583_136368942_136368992_136388855_136388923_136392112_136392190_136398971_136399096_136402175_136402314_136421168_136421248_136436833_136436882_136514594_136514706_136596031
transcript_45624.nnic	chr5	-	2372	11	NNC	ENSMUSG00000004415.16	novel	2724	13	NA	NA	-9702	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_10	9.19565114605812	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTCTGTGGCTTGTCAG	937	False	NA	0	True	AATAAA	-19	NA	136811602	136770612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_136772061_136773016_136773102_136775874_136775923_136777177_136777214_136778118_136778172_136780522_136780607_136783046_136783200_136783768_136783868_136786485_136786643_136794155_136794218_136811455
transcript_45625.nnic	chr5	+	942	5	Antisense	novelGene_ENSMUSG00000004415.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_1	4.03112887414927	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTCATACTCCAATCTCT	NA	False	NA	NA	False	CATAAA	-18	NA	136766566	136778337	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr5_+_136766691_136773793_136773974_136774222_136774384_136777293_136777375_136777941
transcript_4563.known	chr10	-	5063	42	FSM	ENSMUSG00000001435.16	ENSMUST00000081654.13	5063	42	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_22	34.7938605290869	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGGTTTATAAGCTGCCT	5935	False	NA	0	True	AATAAA	-20	NA	77002382	76888011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_76889242_76889988_76890105_76890617_76890816_76891412_76891662_76893202_76893236_76894532_76894665_76894938_76895013_76895091_76895237_76895728_76895858_76896202_76896247_76899812_76899876_76900370_76900414_76901068_76901138_76902783_76902859_76903212_76903267_76903465_76903493_76904223_76904299_76905269_76905333_76905653_76905681_76905783_76905814_76906794_76906885_76907144_76907181_76907437_76907510_76907860_76907897_76908775_76908803_76909573_76909637_76910183_76910316_76911981_76912009_76912992_76913056_76913517_76913677_76913832_76913887_76914109_76914188_76914290_76914354_76915094_76915122_76916512_76916699_76916982_76917060_76921100_76921231_76923209_76923264_76924703_76924791_76931824_76932370_77002123_77002195_77002272
transcript_45633.known	chr5	+	3071	5	FSM	ENSMUSG00000007987.13	ENSMUST00000200157.5	3071	5	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	11.0989864402116	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTATCTCGTCTCACTTT	4055	False	NA	NA	False	AATAAA	-23	NA	136937003	136944258	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_136937125_136939977_136940055_136940155_136940246_136940542_136940746_136941678
transcript_45635.nnic	chr5	+	769	5	NNC	ENSMUSG00000097908.8	novel	617	4	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	47.2069910076887	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCTTCATCTATGGTCT	NA	False	NA	NA	False	NA	NA	NA	136948203	136962539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_136948286_136951160_136951282_136954557_136954750_136959237_136959388_136962315
transcript_45636.known	chr5	+	617	4	FSM	ENSMUSG00000097908.8	ENSMUST00000197095.5	617	4	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	17.326921891156	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCTTCATCTATGGTCT	NA	False	NA	NA	False	NA	NA	NA	136948205	136962539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_136948286_136951160_136951282_136954557_136954750_136962315
transcript_45637.known	chr5	+	3967	4	FSM	ENSMUSG00000097908.8	ENSMUST00000181045.8	3967	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	24.0878023535196	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTCAGCCTCGCTTTTTT	NA	False	NA	24	True	AATAAA	-13	NA	136947999	136965960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_136948286_136951160_136951282_136954557_136954750_136962592
transcript_45641.known	chr5	+	948	5	FSM	ENSMUSG00000019054.14	ENSMUST00000111094.8	948	5	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	181.92443486239	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTGTGTGTGAGCGAG	4051	False	NA	18	True	AATAAA	-19	NA	136982128	136995086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_136982445_136991852_136991986_136993946_136994024_136994418_136994525_136994770
transcript_45642.known	chr5	+	786	5	FSM	ENSMUSG00000019054.14	ENSMUST00000019198.7	786	5	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	76.6823806359714	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTGTGTGTGAGCGAGCA	3268	False	NA	20	True	AATAAA	-21	NA	136990930	136995088	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_136991083_136991852_136991986_136993946_136994024_136994418_136994525_136994770
transcript_45644.known	chr5	+	601	4	FSM	ENSMUSG00000019054.14	ENSMUST00000111097.8	601	4	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	234.963827003222	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCTTAGCCCCTGC	4182	False	NA	-65	True	NA	NA	NA	136982259	136995003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_136982445_136993946_136994024_136994418_136994525_136994770
transcript_45647.nnic	chr5	+	2744	20	NNC	ENSMUSG00000004846.11	novel	3280	19	NA	NA	-127	-109	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	43.4805015681799	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGAGTCCGTGAGTCCA	NA	False	NA	13	True	AATAAA	-14	NA	137016104	137025393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_137016264_137016458_137016658_137016970_137017063_137017188_137017326_137017425_137017590_137017736_137017850_137017979_137018044_137018451_137018550_137018750_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019812_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137022996_137023144_137023786_137023913_137024959
transcript_45649.known	chr5	+	3280	19	FSM	ENSMUSG00000004846.11	ENSMUST00000004968.11	3280	19	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	18.3673926051335	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTGTGAGTGTGTG	NA	False	NA	NA	False	ATTAAA	-24	NA	137015872	137025502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_137016658_137016970_137017063_137017188_137017326_137017425_137017590_137017736_137017850_137017979_137018044_137018451_137018550_137018750_137018853_137019004_137019131_137019271_137019394_137019598_137019704_137019812_137019939_137020153_137020296_137020397_137020512_137020625_137020695_137022062_137022168_137022996_137023144_137023786_137023913_137024959
transcript_4565.known	chr10	+	2309	6	FSM	ENSMUSG00000001436.16	ENSMUST00000144234.8	2309	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	43.968170305347	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGTTGTGAGACACT	NA	False	NA	17	True	ATTAAA	-19	NA	76868517	76886266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_76868615_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
transcript_45651.known	chr5	-	740	5	FSM	ENSMUSG00000059518.15	ENSMUST00000085941.12	740	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	104.169033306449	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTCATTCTGGGGTAT	NA	False	NA	6	True	AATAAA	-22	NA	137015755	137011043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137015664
transcript_45652.known	chr5	-	1208	5	FSM	ENSMUSG00000059518.15	ENSMUST00000156963.8	1208	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	134.024251536802	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGGTCAGGGTTGACTG	NA	False	NA	32	True	NA	NA	NA	137016875	137011017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137011272_137011371_137011542_137011721_137011802_137013732_137013904_137016342
transcript_45653.known	chr5	-	764	4	FSM	ENSMUSG00000059518.15	ENSMUST00000034953.14	764	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_3	111.749720357592	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGCTCATTCTGGG	NA	False	NA	2	True	AATAAA	-18	NA	137015683	137011047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137011542_137011721_137011802_137013732_137013904_137015664
transcript_45654.known	chr5	-	698	4	FSM	ENSMUSG00000059518.15	ENSMUST00000111090.9	698	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	144.270579121316	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTGCCCTGCCGACCAA	NA	False	NA	-100	True	NA	NA	NA	137016397	137011149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137011542_137011721_137011802_137013732_137013904_137016342
transcript_45658.known	chr5	-	1353	5	FSM	ENSMUSG00000004849.15	ENSMUST00000111080.8	1353	5	0	0	0	0	multi-exon	FALSE	canonical	3	639	junction_4	57.0586321252096	670	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCCTTGGCTTTGTTGG	NA	False	NA	1	True	AATAAA	-25	NA	137074989	137063846	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137064646_137066271_137066410_137070622_137070732_137071917_137072097_137074861
transcript_45661.known	chr5	+	1037	1	FSM	ENSMUSG00000051502.8	ENSMUST00000052825.7	1037	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTATGGCCCAGCCTGTGTTT	1544	False	NA	7	True	NA	NA	NA	137292890	137293927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_137292900_137293900
transcript_45662.known	chr5	-	2972	20	FSM	ENSMUSG00000037364.13	ENSMUST00000197466.5	2972	20	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	165.9658376889	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAACTGTGTGCTGTATG	8265	False	NA	-12	True	AGTAAA	-18	NA	137305928	137293976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137294169_137294248_137294355_137294479_137294570_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
transcript_45663.known	chr5	-	2988	20	FSM	ENSMUSG00000037364.13	ENSMUST00000199243.5	2988	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	194.772841622735	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTGTGTGCTGTATGTCCC	8265	False	NA	-8	True	AGTAAA	-22	NA	137305928	137293972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137294169_137294248_137294355_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
transcript_45664.known	chr5	-	3024	20	FSM	ENSMUSG00000037364.13	ENSMUST00000040873.12	3024	20	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	186.551382419291	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTATGTCCCTTCCCAA	8257	False	NA	-1	True	AGTAAA	-29	NA	137305936	137293965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298015_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307_137305448_137305685
transcript_45669.known	chr5	-	3001	19	FSM	ENSMUSG00000037364.13	ENSMUST00000198526.5	3001	19	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	246.227361558879	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTAACTGTGTGCTGTA	8510	False	NA	-14	True	AGTAAA	-16	NA	137305683	137293978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137294169_137294248_137294376_137294479_137294582_137294728_137294886_137295036_137295231_137295340_137295495_137295601_137295776_137296060_137296250_137296489_137296569_137296652_137296715_137296987_137297146_137297819_137297935_137298010_137298115_137298228_137298414_137298505_137298676_137300387_137300577_137300788_137300936_137301173_137301303_137305307
transcript_4567.known	chr10	+	2347	6	FSM	ENSMUSG00000001436.16	ENSMUST00000105410.10	2347	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	40.1875602643405	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTTCTGTTGTGAGACAC	NA	False	NA	16	True	ATTAAA	-18	NA	76869045	76886265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_76869182_76874183_76874414_76877649_76878404_76878615_76878809_76880594_76880737_76885373
transcript_45670.known	chr5	-	2168	9	FSM	ENSMUSG00000023348.12	ENSMUST00000024119.11	2168	9	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_6	14.9248115565993	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATTTCTGCTGGTCTTTCA	1527	False	NA	NA	False	CATAAA	-41	NA	137312666	137307915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137308437_137308546_137308668_137308914_137309094_137310135_137310306_137310401_137310496_137310967_137311352_137311612_137311739_137311842_137311971_137312221
transcript_45673.known	chr5	-	1860	10	FSM	ENSMUSG00000029713.16	ENSMUST00000031726.15	1860	10	0	0	0	0	multi-exon	FALSE	canonical	3	634	junction_9	47.0030206541801	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGTCTCCTTGCTTACTG	1532	False	NA	-5	True	CATAAA	-22	NA	137531772	137526388	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137526872_137526952_137527170_137527265_137527468_137527704_137527772_137527864_137528028_137528107_137528172_137528445_137528553_137528659_137528699_137528956_137529103_137531400
transcript_45674.known	chr5	-	881	2	FSM	ENSMUSG00000029715.6	ENSMUST00000031728.5	881	2	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_1	0	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGGCTTCGAATGGCCTC	1639	False	NA	-33	True	AATAAA	-19	NA	137500780	137499700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137500342_137500540
transcript_45675.known	chr5	-	988	1	FSM	ENSMUSG00000029715.6	ENSMUST00000111035.2	988	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGGCTTCGAATGGCCTCT	1732	False	NA	-32	True	AATAAA	-20	NA	137500687	137499699	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137499700_137500700
transcript_45676.known	chr5	+	2926	20	FSM	ENSMUSG00000029716.14	ENSMUST00000031729.13	2926	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.69605231049804	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGCTTCCTCTTCATGCC	3578	False	NA	NA	False	AATAAA	-31	NA	137568112	137585743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_137568197_137568333_137568381_137569249_137569304_137569538_137569786_137569875_137570054_137572648_137572790_137572869_137572982_137573075_137573199_137575719_137575837_137575927_137576068_137577140_137577305_137578428_137578549_137580850_137580934_137581019_137581084_137581180_137581249_137581335_137581413_137581492_137581578_137581666_137581895_137582187_137582329_137585090
transcript_45683.nnic	chr5	-	1233	7	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	5	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	122.641301725352	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9957	False	NA	-10	True	ATTAAA	-21	NA	137598981	137594906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_137594991_137595176_137595316_137595412_137595578_137596851_137596942_137597855_137598086_137598238_137598315_137598532
transcript_45684.nnic	chr5	-	1337	7	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	111.835320399634	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9565	False	NA	-10	True	ATTAAA	-21	NA	137599373	137594906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_137594991_137595176_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532_137598806_137599003
transcript_45687.nnic	chr5	-	1404	7	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	4	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	111.835320399634	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9622	False	NA	-10	True	ATTAAA	-21	NA	137599316	137594906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_137595005_137595066_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532_137598806_137599003
transcript_45688.nnic	chr5	-	1171	7	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	114.841073759445	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9606	False	NA	-10	True	ATTAAA	-21	NA	137599332	137594906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_137595005_137595066_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532_137598806_137599252
transcript_45694.nnic	chr5	-	1486	6	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-4	0	intron_retention	FALSE	non_canonical	0	0	junction_1	101.456197445006	49	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9614	False	NA	-10	True	ATTAAA	-21	NA	137599324	137594906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_137594991_137595176_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
transcript_45696.nnic	chr5	-	1610	6	NNC	ENSMUSG00000037221.14	novel	1456	6	NA	NA	-4	0	intron_retention	FALSE	non_canonical	0	0	junction_1	101.456197445006	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAACGTAGGATGCTTA	9614	False	NA	-10	True	ATTAAA	-21	NA	137599324	137594906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_137595005_137595066_137595316_137595412_137595578_137597855_137598086_137598238_137598315_137598532
transcript_45702.known	chr5	+	580	1	FSM	ENSMUSG00000105408.2	ENSMUST00000198801.2	580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GTAAAGAAAATGACTGAATA	2844	False	NA	NA	False	NA	NA	NA	137599854	137600434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_137599900_137600400
transcript_45706.known	chr5	-	1626	9	FSM	ENSMUSG00000029718.15	ENSMUST00000031731.14	1626	9	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_8	116.165560731225	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCGTGTCTGAGGTTCTGT	4023	False	NA	-2	True	AATAAA	-21	NA	137609749	137603364	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658_137608768_137609498
transcript_45708.nic	chr5	-	1586	8	ISM	ENSMUSG00000029718.15	ENSMUST00000031731.14	1626	9	769	2	-16	0	3prime_fragment	FALSE	canonical	3	423	junction_6	64.4265124789793	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATCGTGTCTGAGGTTCT	4792	False	NA	-4	True	AATAAA	-19	NA	137608980	137603366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137607152_137607412_137608658
transcript_45713.nic	chr5	-	1180	7	ISM	ENSMUSG00000029718.15	ENSMUST00000054564.13	1585	10	2585	-3	-599	0	3prime_fragment	FALSE	canonical	3	52	junction_6	194.602729226037	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGATCGTGTCTGAGGTTCT	6719	False	NA	-4	True	AATAAA	-19	NA	137607053	137603366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_137603580_137603718_137603890_137603984_137604063_137605088_137605370_137605669_137605807_137606216_137606342_137606878
transcript_45718.known	chr5	+	3078	18	FSM	ENSMUSG00000093445.8	ENSMUST00000031734.16	3078	18	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_8	20.6479805391719	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCAGGTGTGTGCCTGCC	2184	False	NA	25	True	AATAAA	-27	NA	137627382	137639356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_137627689_137631833_137631979_137632110_137632238_137632405_137632512_137635000_137635138_137635246_137635360_137635474_137635575_137635806_137635898_137635987_137636065_137636166_137636229_137636327_137636445_137636554_137636624_137636700_137636805_137636916_137637001_137637383_137637461_137637611_137637750_137637839_137637918_137638209
transcript_45729.known	chr5	+	1005	6	FSM	ENSMUSG00000079165.11	ENSMUST00000177466.8	1005	6	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	39.5858560599616	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTGTTGACAATAAATCA	1101	False	NA	-8	True	NA	NA	NA	137639595	137641130	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_137639819_137639983_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
transcript_45730.nnic	chr5	+	1055	6	NNC	ENSMUSG00000079165.11	novel	1005	6	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	canonical	2	14	junction_1	81.7958434151761	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGCTGTCTGCAGTGGGA	1061	False	NA	23	True	AATAAA	-15	NA	137639555	137641161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_137639819_137640004_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
transcript_45731.known	chr5	+	1101	5	FSM	ENSMUSG00000079165.11	ENSMUST00000166099.3	1101	5	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_4	13.4976849866931	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTCTGCAGTGGGACAT	1204	False	NA	26	True	AATAAA	-18	NA	137639698	137641164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_137640079_137640171_137640276_137640357_137640497_137640602_137640701_137640784
transcript_45734.known	chr5	-	2858	13	FSM	ENSMUSG00000029722.16	ENSMUST00000100544.11	2858	13	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_7	43.0686628794327	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TTAAAAAAAAAAAAAAAAAA	1810	False	NA	NA	False	NA	NA	NA	137682942	137648746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137650085_137650691_137650778_137652024_137652154_137653400_137653482_137653591_137653675_137653869_137653991_137658423_137658457_137659625_137659755_137661697_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
transcript_45738.known	chr5	-	2893	12	FSM	ENSMUSG00000029722.16	ENSMUST00000031736.16	2893	12	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	17.5678142969908	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCTGAGTGTCTTGTTTTG	1764	False	NA	NA	False	NA	NA	NA	137682988	137648724	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137650085_137650691_137650778_137652024_137652154_137653400_137653482_137653591_137653675_137653869_137653991_137659625_137659755_137661697_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
transcript_45744.known	chr5	-	1497	5	FSM	ENSMUSG00000029722.16	ENSMUST00000138604.2	1497	5	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_3	10.3289641300568	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGGGCTGGAGAGATGGCT	1797	False	NA	NA	False	NA	NA	NA	137682955	137661071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137661867_137662477_137662635_137665322_137665439_137665942_137666037_137682620
transcript_45746.known	chr5	-	3912	7	FSM	ENSMUSG00000045348.17	ENSMUST00000061789.14	3912	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	12.2836838484589	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAATAATATATTAAAAGAC	8118	False	NA	-32	True	TTTAAA	-14	NA	137739869	137729174	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137730196_137731312_137731423_137731977_137732188_137733101_137734617_137736070_137736418_137737912_137738065_137739312
transcript_45748.known	chr5	+	3983	5	FSM	ENSMUSG00000029723.17	ENSMUST00000100539.10	3983	5	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	32.7595405950694	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGCTGAGCCATCTCTCC	NA	False	NA	NA	False	NA	NA	NA	137744257	137759670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_137744677_137745109_137746122_137749469_137749631_137756945_137756995_137757328
transcript_45750.nnic	chr5	+	967	4	NNC	ENSMUSG00000029723.17	novel	402	2	NA	NA	2467	201	at_least_one_novel_splicesite	FALSE	canonical	2	17	junction_1	175.655597374205	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGAGGTTGGTGTGCTGT	29	False	NA	13	True	ATTAAA	-24	NA	137746724	137758011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_137746799_137749469_137749631_137756945_137756995_137757328
transcript_45752.nic	chr5	+	731	4	NIC	ENSMUSG00000029725.11	novel	430	3	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_1	179.735608294208	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777066	137778372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_137777160_137777563_137777808_137777887_137778025_137778115
transcript_45753.known	chr5	+	956	4	FSM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_1	53.8970211504206	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777165	137778372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_137777484_137777563_137777808_137777887_137778025_137778115
transcript_45758.known	chr5	+	430	3	FSM	ENSMUSG00000029725.11	ENSMUST00000126126.8	430	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	199	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAAGGAAGGGATGCAGGG	NA	False	NA	NA	False	NA	NA	NA	137777110	137778024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_137777160_137777563_137777808_137777887
transcript_45759.nic	chr5	+	1074	3	ISM	ENSMUSG00000029725.11	ENSMUST00000031739.6	956	4	-27	0	-27	0	intron_retention	FALSE	canonical	3	301	junction_1	64	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777138	137778372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_137777484_137777563_137777808_137777887
transcript_4576.known	chr10	+	2290	9	FSM	ENSMUSG00000020260.10	ENSMUST00000020493.9	2290	9	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	28.5938695352693	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGCAGTCCTAGAAATGGT	NA	False	NA	16	True	AATAAA	-17	NA	77095051	77105409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_77095288_77096407_77096659_77098270_77098416_77099098_77099210_77100789_77100857_77101669_77101796_77102746_77102928_77103017_77103142_77104360
transcript_45760.nic	chr5	+	1063	3	NIC	ENSMUSG00000029725.11	novel	956	4	NA	NA	-27	0	intron_retention	FALSE	canonical	3	301	junction_1	46	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777138	137778372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_137777484_137777563_137778025_137778115
transcript_45762.known	chr5	+	476	2	FSM	ENSMUSG00000029725.11	ENSMUST00000152298.2	476	2	0	0	0	0	multi-exon	FALSE	canonical	3	393	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCGAACTGTTCTTGGGA	NA	False	NA	5	True	AATAAA	-18	NA	137777805	137778372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_137778025_137778115
transcript_45763.known	chr5	-	3128	4	FSM	ENSMUSG00000029726.17	ENSMUST00000031740.16	3128	4	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_2	12.2474487139159	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGTCCAGCACTTTCTA	2726	False	NA	-6	True	AATAAA	-29	NA	137784925	137780167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137780747_137780856_137780984_137781391_137781611_137782722
transcript_45764.known	chr5	-	524	4	FSM	ENSMUSG00000029726.17	ENSMUST00000132726.2	524	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	65.2703778311588	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCTTCTGAGAAGTTGTAAA	2674	False	NA	NA	False	NA	NA	NA	137784977	137780690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_137780747_137780856_137780984_137781391_137781611_137784855
transcript_45765.known	chr5	+	2222	17	FSM	ENSMUSG00000037108.14	ENSMUST00000035852.14	2222	17	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	16.2498798072478	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGCTTTGTGTGTGTGT	7077	False	NA	32	True	AATAAA	-25	NA	137786059	137820883	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_137786208_137793752_137793808_137794833_137795079_137796159_137796236_137797769_137797864_137798247_137798406_137799235_137799359_137808277_137808395_137809074_137809196_137809836_137809913_137810263_137810363_137815154_137815239_137815719_137815787_137816059_137816155_137817225_137817287_137817703_137817839_137820415
transcript_45767.nic	chr5	+	2180	16	NIC	ENSMUSG00000037108.14	novel	2222	17	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_11	25.4046364972136	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGCTTTGTGTGTGTGT	7035	False	NA	32	True	AATAAA	-25	NA	137786017	137820883	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_137786208_137793752_137793808_137794833_137795079_137796159_137796236_137797769_137797864_137798247_137798406_137799235_137799359_137808277_137808395_137809074_137809196_137809836_137809913_137810263_137810363_137815719_137815787_137816059_137816155_137817225_137817287_137817703_137817839_137820415
transcript_45771.known	chr5	+	2310	5	FSM	ENSMUSG00000037017.16	ENSMUST00000110961.9	2310	5	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	38.7774096607806	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTATTTTATTGGGT	NA	False	NA	55	True	TATAAA	-6	NA	138115177	138132527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_138115270_138116097_138116183_138123239_138123953_138124715_138124909_138131300
transcript_45772.known	chr5	+	2252	5	FSM	ENSMUSG00000037017.16	ENSMUST00000062350.15	2252	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	46.7566840141599	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGCGTCTCAGGACTGT	NA	False	NA	3	True	AATAAA	-12	NA	138115164	138132475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_138115251_138116097_138116183_138123239_138123953_138124715_138124909_138131300
transcript_45773.known	chr5	+	2134	4	FSM	ENSMUSG00000037017.16	ENSMUST00000080732.10	2134	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	59.1626759217517	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTAGCGTCTCAGGACTGTT	NA	False	NA	4	True	AATAAA	-13	NA	138115198	138132476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_138115251_138123239_138123953_138124715_138124909_138131300
transcript_45774.known	chr5	+	2204	4	FSM	ENSMUSG00000037017.16	ENSMUST00000110960.9	2204	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	50.6776303927307	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATGTATTTTATTGGGT	NA	False	NA	55	True	TATAAA	-6	NA	138115198	138132527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_138115270_138123239_138123953_138124715_138124909_138131300
transcript_45780.known	chr5	+	3479	15	FSM	ENSMUSG00000019518.12	ENSMUST00000019662.11	3479	15	0	0	0	0	multi-exon	TRUE	canonical	3	48	junction_6	9.89356624586021	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTGGTGCATTCCTATA	8077	False	NA	18	True	NA	NA	NA	138170263	138178691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_138170511_138170610_138170700_138171048_138171156_138171233_138171331_138173011_138173123_138173205_138173287_138174173_138174237_138174313_138174381_138174471_138174526_138174873_138174981_138175078_138175174_138175417_138175463_138176184_138176236_138176330_138176443_138176538
transcript_45786.known	chr5	-	2962	15	FSM	ENSMUSG00000029730.17	ENSMUST00000000505.16	2962	15	0	0	0	0	multi-exon	FALSE	canonical	3	1644	junction_12	192.903605514278	1475	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTAGAGTTTTTAGTATG	1716	False	NA	-8	True	AATAAA	-32	NA	138170684	138162844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_138163183_138163313_138163424_138164171_138164341_138164944_138165029_138165307_138165702_138165812_138165897_138166102_138166235_138166319_138166435_138166594_138166745_138167071_138167210_138167359_138167541_138167610_138167736_138167821_138167987_138168578_138168659_138169987
transcript_45795.known	chr5	-	2304	15	FSM	ENSMUSG00000036980.14	ENSMUST00000048698.14	2304	15	0	0	0	0	multi-exon	FALSE	canonical	3	362	junction_14	100.146932869985	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	1952	False	NA	-4	True	AATAAA	-18	NA	138185488	138176878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185431
transcript_4582.nic	chr10	-	1493	6	ISM	ENSMUSG00000020262.16	ENSMUST00000105404.9	6557	11	104705	3539	26654	-3538	3prime_fragment	FALSE	canonical	2	18	junction_4	4.22374241638857	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGCACGAGAATATAGAGGT	4977	False	NA	NA	False	AATAAA	-18	NA	77149356	77130099	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_77130796_77131531_77131711_77139006_77139189_77146939_77147109_77148211_77148361_77149238
transcript_45824.known	chr5	+	1098	10	FSM	ENSMUSG00000019494.15	ENSMUST00000110951.8	1098	10	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	1439.16262518466	2716	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCAGCCCTTCCAGTGGC	NA	False	NA	11	True	AATAAA	-12	NA	138159361	138162240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_138159453_138159636_138159760_138159935_138160068_138160398_138160488_138160583_138160647_138160996_138161045_138161391_138161507_138161588_138161682_138161770_138161872_138161997
transcript_4584.known	chr10	-	2394	6	FSM	ENSMUSG00000032977.10	ENSMUST00000045454.9	2394	6	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_3	11.7881296226331	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGCAGTCCCCTGGCTTTC	NA	False	NA	-7	True	AATAAA	-26	NA	77351619	77322494	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_77324308_77325831_77325901_77333196_77333348_77339679_77339749_77350139_77350249_77351436
transcript_45849.known	chr5	-	2308	15	FSM	ENSMUSG00000036980.14	ENSMUST00000110936.8	2308	15	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_14	183.295568157341	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGAGCCTCCCGCATCACA	9932	False	NA	-4	True	AATAAA	-18	NA	138185713	138176878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_138177410_138177674_138177873_138178041_138178216_138179152_138179279_138179379_138179455_138180169_138180353_138180462_138180565_138180675_138180754_138180859_138181006_138181356_138181477_138181575_138181633_138181829_138181984_138182100_138182188_138182593_138182810_138185652
transcript_45850.known	chr5	+	2148	3	FSM	ENSMUSG00000019518.12	ENSMUST00000157031.2	2148	3	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	1.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATAAAAATAAAAATAAC	8122	False	NA	NA	False	NA	NA	NA	138170308	138172634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_138170511_138170610_138171156_138171233
transcript_45851.known	chr5	+	1855	6	FSM	ENSMUSG00000036968.16	ENSMUST00000110934.9	1855	6	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_5	26.1350339582714	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTAAGTGTAATACATAATA	5598	False	NA	NA	False	AAAACA	-12	NA	138185746	138192180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_138185983_138188531_138188659_138188754_138188852_138190099_138190223_138190822_138190941_138191026
transcript_45854.known	chr5	+	1308	1	FSM	ENSMUSG00000049285.5	ENSMUST00000057773.5	1308	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	52	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTCCTGATGTAAATGC	5031	False	NA	NA	False	AATAAA	-17	NA	138192575	138193883	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_138192600_138193900
transcript_45857.known	chr5	+	877	4	FSM	ENSMUSG00000050552.9	ENSMUST00000062067.8	877	4	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	67.9084350839832	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATGTGTGCACAGAATGGT	NA	False	NA	35	True	AATAAA	-27	NA	138253743	138257657	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_138254066_138254514_138254596_138256916_138257035_138257301
transcript_45858.known	chr5	+	980	3	FSM	ENSMUSG00000050552.9	ENSMUST00000160157.2	980	3	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_1	14	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGCACAGAATGGTTTG	NA	False	NA	38	True	AATAAA	-30	NA	138254092	138257660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_138254596_138256916_138257035_138257301
transcript_45859.known	chr5	-	2586	10	FSM	ENSMUSG00000029510.16	ENSMUST00000161827.8	2586	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	3.67507453523138	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTCTCTGTGTGTGTA	1721	False	NA	0	True	AATAAA	-20	NA	138278267	138271916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_138272832_138273716_138273887_138273968_138274109_138274190_138274338_138274469_138274601_138274845_138275009_138275668_138275750_138276476_138276800_138277100_138277260_138277910
transcript_45860.known	chr5	+	624	2	FSM	ENSMUSG00000085227.2	ENSMUST00000141454.2	624	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTTGACTGAGGAGAAAATG	6186	False	NA	NA	False	AAGAAA	-15	NA	138262315	138264594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_138262364_138264018
transcript_45862.known	chr5	+	4211	34	FSM	ENSMUSG00000036928.15	ENSMUST00000048028.15	4211	34	0	0	0	0	multi-exon	TRUE	canonical	2	72	junction_1	21.1857845161499	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGACTTGAGATTGTCA	NA	False	NA	20	True	AATAAA	-20	NA	138278787	138310655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_138278917_138280126_138280301_138280880_138280978_138281294_138281415_138287457_138287555_138288452_138288530_138288970_138289176_138289591_138289744_138294095_138294170_138294963_138295088_138295588_138295688_138295884_138295965_138296227_138296336_138296540_138296656_138296778_138296885_138297069_138297174_138297392_138297486_138297600_138297691_138297914_138298116_138298215_138298287_138298385_138298474_138299043_138299122_138299203_138299297_138299418_138299588_138299695_138299833_138300785_138300888_138302303_138302453_138302635_138302765_138302846_138303005_138306730_138306918_138307088_138307191_138307460_138307534_138309995_138310068_138310297
transcript_45864.known	chr5	+	869	5	FSM	ENSMUSG00000036898.17	ENSMUST00000100524.3	869	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	23.7276210354093	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCGAGAAGCCTTATGTGTG	NA	False	NA	NA	False	NA	NA	NA	138439801	138454589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_138439892_138443013_138443141_138445776_138445870_138453241_138453352_138454140
transcript_45866.known	chr5	+	932	3	FSM	ENSMUSG00000036898.17	ENSMUST00000151095.2	932	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGGATGGAGTTTTATTTTAA	NA	False	NA	NA	False	NA	NA	NA	138439772	138446462	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_138439892_138443013_138443141_138445776
transcript_45869.known	chr5	-	2254	6	FSM	ENSMUSG00000058291.15	ENSMUST00000063262.11	2254	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	25.9584283037321	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCTTGATCTTTGTTTG	1752	False	NA	-9	True	AATAAA	-10	NA	138618002	138604381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138614731_138614822_138615316_138615430_138617870
transcript_45870.known	chr5	-	3318	5	FSM	ENSMUSG00000058291.15	ENSMUST00000085852.11	3318	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	27.3530162870569	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CATAAAAAAATTAATGAAAA	1734	False	NA	NA	False	NA	NA	NA	138618020	138603245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_138606084_138610085_138610176_138610300_138610428_138615316_138615430_138617870
transcript_45871.known	chr5	+	1470	1	FSM	ENSMUSG00000104686.2	ENSMUST00000198787.2	1470	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGCTCCTTTGTAGTGT	6845	False	NA	NA	False	AATAAA	-33	NA	138617549	138619019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_138617500_138619000
transcript_45872.nnic	chr5	+	3013	5	NNC	ENSMUSG00000056014.16	novel	3038	4	NA	NA	-18	0	intron_retention	FALSE	non_canonical	0	0	junction_4	11.7686022959398	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTGGACACTCTCCTT	1789	False	NA	49	True	AATAAA	-16	NA	138621102	138647098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_138621251_138634425_138634553_138637756_138637850_138644375_138646892_138646969
transcript_45873.known	chr5	+	3038	4	FSM	ENSMUSG00000056014.16	ENSMUST00000069862.11	3038	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	4.92160768674447	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTGGACACTCTCCTT	1842	False	NA	49	True	AATAAA	-16	NA	138621155	138647098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_138621251_138634425_138634553_138637756_138637850_138644375
transcript_45874.known	chr5	-	2060	6	FSM	ENSMUSG00000025856.16	ENSMUST00000076095.14	2060	6	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_5	43.6055042397173	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACTGGATGCATCCCGTGG	NA	False	NA	-19	True	ACTAAA	-32	NA	138980792	138961768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138980463
transcript_45878.nic	chr5	-	1643	6	NIC	ENSMUSG00000025856.16	novel	1287	7	NA	NA	-18	128	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	151.854667363239	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATTATTTCTGATGCGCC	NA	False	NA	-13	True	AATAAA	-18	NA	138981774	138962142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138981488
transcript_4588.known	chr10	+	2294	6	FSM	ENSMUSG00000009291.14	ENSMUST00000009435.12	2294	6	0	0	0	0	multi-exon	FALSE	canonical	3	637	junction_4	46.3188946327522	251	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGATTTCTTTGTTTTGT	1291	False	NA	32	True	AATAAA	-15	NA	77417553	77434566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_77417762_77423084_77423138_77425467_77425577_77428679_77428852_77429697_77429745_77432861
transcript_45885.nnic	chr5	-	1030	6	NIC	ENSMUSG00000025856.16	novel	1363	8	NA	NA	-367	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_5	159.261294732901	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAACAAAAAAAA	NA	False	NA	NA	False	AAAACA	-14	NA	138982209	138962725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_138962983_138964900_138965028_138971944_138972133_138974103_138974209_138979042_138979140_138981953
transcript_45887.known	chr5	+	4134	23	FSM	ENSMUSG00000036817.15	ENSMUST00000058716.14	4134	23	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_7	179.419817953258	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGTCTTATCTCTGCC	NA	False	NA	33	True	AATAAA	-19	NA	139186391	139235595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139215507_139215700_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
transcript_45890.known	chr5	+	2608	22	FSM	ENSMUSG00000036817.15	ENSMUST00000078690.13	2608	22	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_6	196.102233969428	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTCTGTATATACCAAGAC	NA	False	NA	NA	False	NA	NA	NA	139186434	139234304	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139216527_139216594_139216881_139216993_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
transcript_45894.known	chr5	+	3714	20	FSM	ENSMUSG00000036817.15	ENSMUST00000110883.9	3714	20	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_6	213.143404315789	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGTGCGATTTCAAGTGAT	NA	False	NA	-12	True	AATAAA	-21	NA	139186397	139235550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139219225_139219325_139219655_139219750_139220269_139220329_139220441_139220588_139221246_139221487_139222403_139222491_139223633_139223678_139224582_139224695_139226987_139227243_139227697_139227783_139231083_139231200_139232447_139232616_139233824_139233918_139234172
transcript_45898.known	chr5	+	1522	7	FSM	ENSMUSG00000036817.15	ENSMUST00000100517.10	1522	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	372.028971392761	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAAAAATATTCTTCTA	NA	False	NA	NA	False	NA	NA	NA	139186421	139214095	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_139186455_139200912_139201010_139209348_139209541_139211017_139211203_139212332_139212360_139212460_139212641_139213287
transcript_45902.known	chr5	+	2107	9	FSM	ENSMUSG00000025858.13	ENSMUST00000026976.12	2107	9	0	0	0	0	multi-exon	FALSE	canonical	3	1098	junction_8	59.685503893324	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCAGTAGTCCTTTCTG	NA	False	NA	NA	False	AATAAA	-15	NA	139238078	139255806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_139238375_139248235_139248315_139248624_139248707_139249233_139249384_139251381_139251521_139252758_139252900_139252981_139253058_139253157_139253231_139254735
transcript_45903.known	chr5	+	1180	9	FSM	ENSMUSG00000025858.13	ENSMUST00000110878.2	1180	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	399.478546826985	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTGTCTCTGCTTCCTTG	NA	False	NA	NA	False	AATAAA	-31	NA	139239265	139255084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_139239357_139248235_139248315_139248624_139248707_139249233_139249384_139251381_139251521_139252758_139252900_139252981_139253058_139253157_139253231_139254735
transcript_45906.known	chr5	-	2461	3	FSM	ENSMUSG00000045438.13	ENSMUST00000049630.13	2461	3	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_2	1.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGCGTTGAGTAGTGTT	NA	False	NA	NA	False	TATAAA	-19	NA	139330988	139321943	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_139324131_139328317_139328430_139330826
transcript_45911.known	chr5	-	1429	5	FSM	ENSMUSG00000053553.12	ENSMUST00000066052.12	1429	5	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_4	25.951878544722	481	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGACTTTTTGCCTGTC	NA	False	NA	-6	True	NA	NA	NA	139446257	139345493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_139346486_139347061_139347144_139349727_139349919_139441171_139441302_139446223
transcript_45914.known	chr5	-	2030	4	FSM	ENSMUSG00000053553.12	ENSMUST00000198474.2	2030	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_3	29.698484809835	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGACTTTTTGCCTGTC	NA	False	NA	-6	True	NA	NA	NA	139446282	139345493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_139347144_139349727_139349919_139441171_139441302_139446223
transcript_45917.known	chr5	-	686	3	FSM	ENSMUSG00000053553.12	ENSMUST00000196267.2	686	3	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_2	36	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGTGTTTTGTTTTTAAG	NA	False	NA	NA	False	NA	NA	NA	139446266	139349405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_139349919_139441171_139441302_139446223
transcript_45919.known	chr5	-	3169	7	FSM	ENSMUSG00000053581.14	ENSMUST00000079996.13	3169	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_6	14.7271480229163	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCTAGACAGTTTCTCTA	8677	False	NA	-6	True	AATAAA	-24	NA	139470304	139456965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_139459310_139459484_139459551_139460607_139460760_139464221_139464354_139467720_139467816_139468456_139468553_139470020
transcript_45920.known	chr5	-	3121	7	FSM	ENSMUSG00000053581.14	ENSMUST00000110851.8	3121	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	12.5532200384337	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTATTCTAGACAGTTT	8709	False	NA	-11	True	AATAAA	-19	NA	139470272	139456970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_139459310_139459484_139459551_139460607_139460760_139464221_139464354_139467720_139467816_139468456_139468553_139470031
transcript_45926.known	chr5	+	2849	3	FSM	ENSMUSG00000018143.11	ENSMUST00000018287.10	2849	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	1.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGTGTCTGGATGGTGC	NA	False	NA	16	True	AATAAA	-21	NA	139777267	139788408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_139777468_139784893_139784974_139785839
transcript_45927.known	chr5	-	883	3	FSM	ENSMUSG00000029551.14	ENSMUST00000031531.14	883	3	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_2	27	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGAGACATCATGGGCAT	7313	False	NA	-12	True	AATAAA	-31	NA	139812640	139809346	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_139809829_139811882_139812120_139812476
transcript_45928.known	chr5	-	733	3	FSM	ENSMUSG00000029551.14	ENSMUST00000182602.2	733	3	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	75.5	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCTGGCCTTCTCAGTG	7355	False	NA	-33	True	AATAAA	-10	NA	139812598	139809367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_139809829_139811882_139812120_139812563
transcript_4593.known	chr10	+	2031	6	FSM	ENSMUSG00000009293.18	ENSMUST00000174510.8	2031	6	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_5	14.0427917452336	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGTGTTGTGTGGTGCTCA	90	False	NA	5	True	AATAAA	-18	NA	77458108	77481827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_77458251_77466559_77466596_77466682_77466729_77477293_77477413_77479302_77479444_77480280
transcript_45930.known	chr5	-	2401	1	FSM	ENSMUSG00000029551.14	ENSMUST00000182743.2	2401	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAAAAAAAAAAAGGA	7323	False	NA	NA	False	NA	NA	NA	139812630	139810229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_139810200_139812600
transcript_45931.known	chr5	-	2039	9	FSM	ENSMUSG00000036687.14	ENSMUST00000044002.10	2039	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.92028643696715	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTTGGGCTTTCTGTTC	8475	False	NA	NA	False	GATAAA	-19	NA	139800038	139790706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_139791497_139791936_139792132_139792659_139792830_139793374_139793467_139793548_139793625_139793711_139793803_139794111_139794278_139798719_139798948_139799807
transcript_45933.known	chr5	-	2640	18	FSM	ENSMUSG00000029554.16	ENSMUST00000031534.9	2640	18	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_17	17.902078903461	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTCCAAGGCTCCAAGC	NA	False	NA	1	True	AATAAA	-27	NA	140307307	139994443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_139995030_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523_140118581_140129674_140129816_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300908_140307261
transcript_45934.nnic	chr5	-	2519	17	NIC	ENSMUSG00000029554.16	novel	2640	18	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	24	junction_6	48.426329357076	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGATTGTGTCCAAGGCTC	NA	False	NA	-4	True	AATAAA	-22	NA	140307332	139994448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_139995030_140051568_140051760_140074384_140074593_140091269_140091361_140102991_140103081_140118523_140118581_140179668_140179814_140247252_140247340_140281541_140281604_140285969_140286085_140286188_140286320_140288669_140288752_140289327_140289453_140293345_140293526_140296349_140296491_140300744_140300908_140307261
transcript_45938.nnic	chr5	+	856	5	NNC	ENSMUSG00000036639.13	novel	954	5	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_4	79.3737204621278	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317661	140323892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_140317711_140318177_140318229_140320209_140320375_140321067_140321114_140323347
transcript_45939.known	chr5	+	954	5	FSM	ENSMUSG00000036639.13	ENSMUST00000050205.12	954	5	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	49.2461927462418	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317663	140323892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_140317711_140318177_140318229_140320209_140320375_140321067_140321214_140323347
transcript_4594.known	chr10	+	1005	5	FSM	ENSMUSG00000020265.17	ENSMUST00000137841.9	1005	5	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_3	668.550858200033	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTGAGCTTTGTCAAACATA	NA	False	NA	5	True	ATTAAA	-20	NA	77442042	77452544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_77442176_77445645_77445775_77449813_77449886_77451760_77451869_77451981
transcript_45941.nnic	chr5	+	771	5	NNC	ENSMUSG00000036639.13	novel	954	5	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	84.8071341338687	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTTGTGGCACCTTTAA	NA	False	NA	53	True	NA	NA	NA	140317678	140323696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_140317711_140318149_140318229_140320209_140320375_140321067_140321214_140323347
transcript_45942.nnic	chr5	+	967	5	NNC	ENSMUSG00000036639.13	novel	954	5	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	84.8071341338687	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317678	140323892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_140317711_140318149_140318229_140320209_140320375_140321067_140321214_140323347
transcript_45943.known	chr5	+	744	5	FSM	ENSMUSG00000036639.13	ENSMUST00000110827.8	744	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	84.8071341338687	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGGTTGTGGCACCTTTAA	NA	False	NA	53	True	NA	NA	NA	140317708	140323696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_140317742_140318177_140318229_140320209_140320375_140321067_140321214_140323347
transcript_45947.known	chr5	+	952	4	FSM	ENSMUSG00000036639.13	ENSMUST00000071881.10	952	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	90.7450641449256	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCTGTGTGACTACAGCG	NA	False	NA	10	True	NA	NA	NA	140317614	140323892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_140317711_140320209_140320375_140321067_140321214_140323347
transcript_45949.known	chr5	-	1443	3	FSM	ENSMUSG00000029557.8	ENSMUST00000031536.8	1443	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	12	106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTACTTGTCTGTTT	3901	False	NA	-5	True	AAAACA	-37	NA	140317653	140313428	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_140314536_140316734_140317025_140317607
transcript_45951.known	chr5	-	2627	11	FSM	ENSMUSG00000029560.13	ENSMUST00000031539.12	2627	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_10	18.7160359050735	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGGTTTCCACGCTGCA	7720	False	NA	-12	True	AATAAA	-14	NA	140375017	140326057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_140327398_140330040_140330191_140330463_140330611_140332031_140332101_140337887_140338021_140338789_140338951_140339187_140339269_140341714_140341837_140343811_140343930_140345946_140346138_140374902
transcript_45955.known	chr5	+	2945	19	FSM	ENSMUSG00000056076.14	ENSMUST00000100507.8	2945	19	0	0	0	0	multi-exon	TRUE	canonical	3	2428	junction_3	310.145868707844	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCTGTCCTGATCTCTT	NA	False	NA	15	True	AATAAA	-16	NA	140405082	140429115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_140405582_140411016_140411210_140412191_140412312_140412537_140412596_140412771_140412901_140413164_140413323_140415806_140415939_140416016_140416084_140416725_140416773_140418678_140418890_140422002_140422076_140423039_140423163_140424070_140424150_140425667_140425807_140426740_140426867_140427491_140427570_140427878_140427988_140428074_140428192_140428628
transcript_45957.known	chr5	+	2331	2	FSM	ENSMUSG00000036599.11	ENSMUST00000043050.9	2331	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATATTTATATGTACG	NA	False	NA	NA	False	TTTAAA	-31	NA	140491304	140511479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_140491452_140509295
transcript_45959.known	chr5	+	766	2	FSM	ENSMUSG00000036599.11	ENSMUST00000124142.2	766	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGCACCAACTGGAAGCG	NA	False	NA	NA	False	NA	NA	NA	140491329	140509908	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_140491483_140509295
transcript_4596.known	chr10	+	430	5	FSM	ENSMUSG00000009293.18	ENSMUST00000174546.8	430	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	130.407773924717	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTACCCCTGTGCACACTG	138	False	NA	NA	False	GGGGCT	-5	NA	77458156	77480393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_77458251_77466559_77466596_77466682_77466729_77479302_77479444_77480280
transcript_45960.known	chr5	-	613	5	FSM	ENSMUSG00000036586.7	ENSMUST00000042993.7	613	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.11803398874989	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGGCTGCTGTGGAGGTG	NA	False	NA	NA	False	AATAAA	-18	NA	140550826	140548873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_140549050_140549295_140549463_140550187_140550348_140550420_140550501_140550796
transcript_45964.known	chr5	+	3333	14	FSM	ENSMUSG00000000148.18	ENSMUST00000041588.13	3333	14	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	10.6471097836719	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTGTCTTCTCTTTGAGG	NA	False	NA	NA	False	NA	NA	NA	140690765	140705134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_140690831_140691707_140691852_140695892_140696048_140697260_140697409_140698259_140698633_140698807_140698928_140700047_140700140_140700321_140700441_140700514_140700702_140700893_140700968_140702446_140702550_140702683_140702783_140702898_140703075_140703656
transcript_45966.nic	chr5	+	1430	2	ISM	ENSMUSG00000050022.17	ENSMUST00000176035.2	2402	4	-8	8129	-8	0	5prime_fragment	FALSE	canonical	3	12	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTCTGTGTCATGTATTGT	NA	False	NA	23	True	NA	NA	NA	140735029	140739065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_140735087_140737692
transcript_45968.known	chr5	-	1299	6	FSM	ENSMUSG00000036526.9	ENSMUST00000196169.2	1299	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	3.77359245282264	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGTTCTTATCCCACAG	NA	False	NA	NA	False	ATTAAA	-21	NA	140867960	140858746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_140859285_140860095_140860212_140862151_140862277_140863717_140863898_140866052_140866189_140867756
transcript_4597.known	chr10	+	487	4	FSM	ENSMUSG00000020265.17	ENSMUST00000129492.8	487	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	597.315661940987	257	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCACCGAAGGATTCTCC	NA	False	NA	NA	False	NA	NA	NA	77442058	77452141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_77442185_77445645_77445775_77449813_77449886_77451981
transcript_45970.known	chr5	+	3689	17	FSM	ENSMUSG00000039623.14	ENSMUST00000038699.13	3689	17	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_8	14.9769353924626	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGAGGGCGCGGTGTCTT	8700	False	NA	4	True	AATAAA	-14	NA	142449808	142464465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_142449891_142452012_142452148_142452244_142452432_142453396_142453542_142453775_142453886_142454618_142454788_142455761_142455903_142456044_142456083_142456148_142456312_142457957_142458140_142459662_142459806_142460128_142460270_142460629_142460742_142461457_142461556_142462448_142462582_142462651_142462867_142462970
transcript_45976.known	chr5	-	2831	5	FSM	ENSMUSG00000066640.12	ENSMUST00000035985.8	2831	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	6.28490254498827	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGATGTCTCCAGGATGTT	NA	False	NA	-2	True	NA	NA	NA	142880993	142857543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_142858276_142864412_142864632_142871293_142872838_142874423_142874631_142880864
transcript_4598.known	chr10	+	1874	4	FSM	ENSMUSG00000020265.17	ENSMUST00000099538.6	1874	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	598.245397437837	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTTGGCCTATGTTAAAC	NA	False	NA	25	True	AGTAAA	-18	NA	77442404	77453256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_77442803_77445645_77445775_77449813_77449886_77451981
transcript_45982.known	chr5	-	1920	6	FSM	ENSMUSG00000029580.15	ENSMUST00000100497.11	1920	6	0	0	0	0	multi-exon	FALSE	canonical	3	4052	junction_3	78.6180640819907	2223	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTGGCTCTGTGGCTTT	8889	False	NA	-1	True	AATAAA	-27	NA	142892509	142888869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_142889697_142889821_142890004_142890098_142890538_142890991_142891232_142891318_142891448_142892406
transcript_45983.known	chr5	+	2675	5	FSM	ENSMUSG00000029581.15	ENSMUST00000031565.15	2675	5	0	0	0	0	multi-exon	FALSE	canonical	3	2634	junction_2	132.012310032057	239	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGTGTGTGTCTCAGGGG	NA	False	NA	18	True	AATAAA	-18	NA	142946097	142958940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_142947036_142955659_142955817_142955921_142956044_142956272_142956441_142957650
transcript_45985.known	chr5	-	4474	17	FSM	ENSMUSG00000045078.13	ENSMUST00000053498.13	4474	17	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_14	28.015550927119	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGCTCTGTTTGTCCC	6130	False	NA	-1	True	AATAAA	-16	NA	143098749	142976647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076514_143078749_143078881_143084133_143084261_143098653
transcript_45986.known	chr5	-	3704	17	FSM	ENSMUSG00000045078.13	ENSMUST00000200607.5	3704	17	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_14	28.9242005075335	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCAGGCTTTTGTCCTCC	6144	False	NA	NA	False	NA	NA	NA	143098735	142977574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_142978721_142979256_142979327_143001378_143001602_143013700_143013799_143054071_143054151_143054600_143054750_143061481_143061620_143063181_143063233_143065978_143066119_143066717_143066833_143071625_143071791_143073273_143073377_143075497_143075575_143075874_143076685_143078749_143078881_143084133_143084261_143098653
transcript_4599.nic	chr10	+	1235	5	ISM	ENSMUSG00000069581.13	ENSMUST00000092368.10	2169	10	-13	16117	-13	2903	5prime_fragment	FALSE	canonical	0	0	junction_2	2.95803989154981	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTCTACTTAACTCCCCA	NA	False	NA	NA	False	NA	NA	NA	77700443	77706738	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_77700717_77702113_77702205_77703505_77703663_77705396_77705529_77706156
transcript_45990.nnic	chr5	-	565	3	NNC	ENSMUSG00000104529.5	novel	520	3	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	23.5	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTCGCCTCCTATTC	3440	False	NA	0	True	AATAAA	-19	NA	143151543	143150533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_143150848_143151184_143151305_143151412
transcript_45991.known	chr5	-	520	3	FSM	ENSMUSG00000104529.5	ENSMUST00000198334.2	520	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	7.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTGTCGCCTCCTATTC	3477	False	NA	0	True	AATAAA	-19	NA	143151506	143150533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_143150848_143151184_143151305_143151420
transcript_45992.nnic	chr5	-	641	3	NNC	ENSMUSG00000104529.5	novel	520	3	NA	NA	-37	-3	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	8	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTGTGTGTCGCCTCCTA	3440	False	NA	-3	True	AATAAA	-16	NA	143151543	143150536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_143150848_143151105_143151305_143151412
transcript_45993.nnic	chr5	-	645	3	NNC	ENSMUSG00000104529.5	novel	520	3	NA	NA	-49	-3	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	8	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTGTGTGTCGCCTCCTA	3428	False	NA	-3	True	AATAAA	-16	NA	143151555	143150536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_143150848_143151105_143151305_143151420
transcript_45994.known	chr5	-	3335	5	FSM	ENSMUSG00000061898.11	ENSMUST00000049861.11	3335	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	6.20483682299543	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGTTTATGTGTTGTGT	NA	False	NA	NA	False	GATAAA	-3	NA	143166485	143157940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_143160814_143161790_143161887_143162219_143162347_143165240_143165298_143166303
transcript_45995.known	chr5	-	2208	6	FSM	ENSMUSG00000039244.11	ENSMUST00000046418.3	2208	6	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_3	6.98569967862919	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCATTGTGGGGTTTTCA	NA	False	NA	-5	True	AATAAA	-19	NA	143301115	143286961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_143287759_143292520_143292561_143293370_143293896_143297465_143297632_143299932_143300155_143300657
transcript_46.known	ERCC-00136	+	1025	1	FSM	ERCC-00136A	EF011063	1025	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	436	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00136_+_0_1000
transcript_460.nnic	chr1	+	508	3	Genic_Genomic	ENSMUSG00000025934.16	novel	2792	1	NA	NA	-236	-283	multi-exon	FALSE	non_canonical	0	0	junction_1	0	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGTCTTTGGGTCCTAAG	NA	False	NA	NA	False	NA	NA	NA	21323508	21326253	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr1_+_21323669_21324392_21324598_21326110
transcript_4600.known	chr10	+	1818	7	FSM	ENSMUSG00000020284.17	ENSMUST00000105397.10	1818	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	1.5723301886761	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTGTCTGTGTCCCAGGCCC	NA	False	NA	12	True	AATAAA	-12	NA	77814357	77821268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_77814616_77815586_77815606_77816334_77816382_77817417_77817648_77818703_77818876_77819349_77819426_77820252
transcript_46004.nnic	chr5	-	1451	9	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_5	104.937406938613	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5273	False	NA	-13	True	AATACA	-26	NA	143315007	143302243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311087_143311179_143311853_143311979_143314145_143314326_143314920
transcript_46008.nic	chr5	-	1586	9	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_8	94.7198995723707	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5267	False	NA	-13	True	AATACA	-26	NA	143315013	143302243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314432_143314653_143314920
transcript_46015.known	chr5	-	1341	8	FSM	ENSMUSG00000001844.11	ENSMUST00000159813.8	1341	8	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_2	78.3753397284568	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGTTTTCTCATCATT	5305	False	NA	-14	True	AATACA	-25	NA	143314975	143302244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_143302588_143305985_143306231_143307509_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314920
transcript_46021.nic	chr5	-	1403	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_7	84.1580146425249	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5297	False	NA	-13	True	AATACA	-26	NA	143314983	143302243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314853
transcript_46022.known	chr5	-	1364	8	FSM	ENSMUSG00000001844.11	ENSMUST00000001900.9	1364	8	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_7	40.248209492435	183	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5269	False	NA	-13	True	AATACA	-26	NA	143315011	143302243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314145_143314326_143314920
transcript_46024.nnic	chr5	-	1304	8	NNC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_6	87.5293536769354	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5273	False	NA	-13	True	AATACA	-26	NA	143315007	143302243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310066_143310639_143310714_143311853_143311979_143314201_143314326_143314920
transcript_46028.nic	chr5	-	1448	8	NIC	ENSMUSG00000001844.11	novel	1364	8	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_4	86.0744812736656	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGTTTTCTCATCATTG	5273	False	NA	-13	True	AATACA	-26	NA	143315007	143302243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_143302588_143305985_143306231_143307523_143307650_143309886_143310154_143310639_143310714_143311853_143311979_143314145_143314326_143314920
transcript_4603.known	chr10	-	3730	22	FSM	ENSMUSG00000020277.11	ENSMUST00000020522.9	3730	22	0	0	0	0	multi-exon	FALSE	canonical	3	1016	junction_15	83.2280695716646	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTTCGCCAGACTGGCT	NA	False	NA	NA	False	NA	NA	NA	77845641	77822780	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_77824192_77824508_77824615_77824698_77824799_77825399_77825512_77825723_77825786_77825975_77826141_77826505_77826659_77827187_77827276_77827849_77827921_77828225_77828373_77829215_77829280_77829969_77830035_77831077_77831204_77832153_77832247_77833357_77833454_77835659_77835769_77835968_77836014_77836509_77836676_77837144_77837335_77837843_77837922_77841274_77841349_77845432
transcript_46040.known	chr5	+	600	3	FSM	ENSMUSG00000089889.3	ENSMUST00000162890.2	600	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAATGTCGAAGGCCTTTAAT	NA	False	NA	NA	False	AATAAA	-18	NA	143315081	143318456	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_143315109_143316458_143316641_143318065
transcript_46041.known	chr5	-	801	2	FSM	ENSMUSG00000001844.11	ENSMUST00000161199.2	801	2	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAATGTCAGTGTTCCCAG	5323	False	NA	NA	False	NA	NA	NA	143314957	143314049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_143314326_143314432
transcript_46042.known	chr5	+	501	2	FSM	ENSMUSG00000089889.3	ENSMUST00000160231.2	501	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCGAAGGCCTTTAATCCC	NA	False	NA	NA	False	AATAAA	-21	NA	143315001	143318459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_143315109_143318065
transcript_46043.known	chr5	+	1829	5	FSM	ENSMUSG00000079111.4	ENSMUST00000110731.4	1829	5	0	0	0	0	multi-exon	FALSE	canonical	3	606	junction_2	10.3531396204243	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTATGGTCTTTTCTAT	NA	False	NA	NA	False	AATAAA	-15	NA	143389592	143407656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_143389808_143398245_143398347_143403804_143403964_143405194_143405448_143406555
transcript_46046.known	chr5	-	2325	7	FSM	ENSMUSG00000001847.15	ENSMUST00000100489.4	2325	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	572.095174677159	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACTGGTTATGCTTGTGT	3466	False	NA	-9	True	AATAAA	-13	NA	143513748	143491236	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_143492861_143493081_143493242_143493850_143493914_143495351_143495409_143500423_143500542_143502912_143502985_143513517
transcript_46047.known	chr5	+	919	2	FSM	ENSMUSG00000118332.2	ENSMUST00000118121.2	919	2	0	0	0	0	multi-exon	TRUE	canonical	3	93	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCCGGTGTTTTCCTAATG	NA	False	NA	9	True	AATAAA	-14	NA	143534500	143537693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_143534890_143537163
transcript_46048.known	chr5	+	2202	2	FSM	ENSMUSG00000118332.2	ENSMUST00000119488.2	2202	2	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTATGTTCTCCTTATCTTT	NA	False	NA	32	True	AATAAA	-45	NA	143534462	143550286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_143534890_143548511
transcript_46049.known	chr5	-	5151	18	FSM	ENSMUSG00000051306.8	ENSMUST00000053287.6	5151	18	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_4	13.3323240679149	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCGTCTCAGTTTTACTC	NA	False	NA	NA	False	ATTAAA	-1	NA	143718035	143696079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_143697098_143697704_143697744_143699290_143699593_143700356_143701836_143702331_143702427_143702528_143703237_143703678_143703833_143705248_143705350_143705481_143705623_143706031_143706144_143706902_143706986_143707387_143707459_143708041_143708110_143708863_143708967_143709649_143709761_143712243_143712445_143713534_143713782_143717917
transcript_4605.known	chr10	-	2141	1	FSM	ENSMUSG00000020277.11	ENSMUST00000220304.2	2141	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GCAAAACAAAAAAACCAATT	NA	False	NA	NA	False	AAAAAG	-27	NA	77845570	77843429	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_77843400_77845600
transcript_46051.known	chr5	+	4325	15	FSM	ENSMUSG00000029613.16	ENSMUST00000100487.6	4325	15	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_1	19.8185647866863	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGACACTGTTGGTGTT	NA	False	NA	NA	False	AATAAA	-31	NA	143803542	143841069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_143803764_143808680_143808840_143810568_143810703_143812477_143812516_143814393_143814494_143816252_143816334_143818970_143819071_143820790_143820849_143821473_143821799_143823667_143823780_143826213_143826315_143833982_143834095_143834292_143834376_143835831_143836066_143838602
transcript_46056.known	chr5	-	1185	4	FSM	ENSMUSG00000029610.14	ENSMUST00000031613.11	1185	4	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_3	88.5023540176569	277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTATTTTATTTTAA	NA	False	NA	-18	True	AATAAA	-16	NA	143846657	143839521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_143840009_143841382_143841615_143843366_143843574_143846398
transcript_46057.known	chr5	-	1073	4	FSM	ENSMUSG00000029610.14	ENSMUST00000100483.3	1073	4	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_3	226.993881464286	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTTTATTTTATTTTAA	NA	False	NA	-18	True	AATAAA	-16	NA	143846665	143839521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_143840009_143841382_143841615_143843366_143843574_143846518
transcript_4606.known	chr10	+	1676	13	FSM	ENSMUSG00000000730.14	ENSMUST00000000746.12	1676	13	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_8	3.51484945149386	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTCTGGTGTGGTGTGTG	5591	False	NA	29	True	AATATA	-21	NA	77885675	77899456	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_77885746_77885849_77886038_77886431_77886519_77886749_77886795_77887664_77887745_77887825_77887939_77888545_77888718_77889762_77889851_77890805_77890901_77892678_77892755_77893101_77893242_77895480_77895567_77899020
transcript_46061.known	chr5	+	5477	15	FSM	ENSMUSG00000079109.12	ENSMUST00000170083.8	5477	15	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_1	27.3439916170083	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGCTTATTTATTTTT	NA	False	NA	NA	False	NA	NA	NA	143846781	143870786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_143846898_143848743_143848879_143850219_143850307_143850436_143850540_143851437_143851622_143853173_143853342_143854397_143854496_143856326_143856427_143858833_143858919_143860294_143860451_143862038_143862892_143864916_143865085_143865759_143865861_143865998_143866169_143867833
transcript_46065.known	chr5	-	1769	15	FSM	ENSMUSG00000029617.11	ENSMUST00000031621.11	1769	15	0	0	0	0	multi-exon	FALSE	canonical	3	726	junction_9	71.895615943093	236	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTCCTGTTGAGTCCT	NA	False	NA	1	True	AATAAA	-22	NA	143951671	143924726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_143925068_143927455_143927584_143928289_143928449_143929326_143929445_143930043_143930078_143934980_143935093_143935361_143935424_143938194_143938277_143940860_143941037_143946020_143946105_143947848_143947897_143948269_143948348_143949620_143949715_143949811_143949910_143951516
transcript_4607.known	chr10	+	1657	12	FSM	ENSMUSG00000000730.14	ENSMUST00000151242.8	1657	12	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_7	3.67029622512479	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTAGTGTTCTGGTGTGG	5708	False	NA	23	True	AATATA	-15	NA	77885792	77899450	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_77886038_77886431_77886519_77886749_77886795_77887664_77887745_77887825_77887939_77888545_77888718_77889762_77889851_77890805_77890901_77892678_77892755_77893101_77893242_77895480_77895567_77899020
transcript_46074.known	chr5	-	5106	25	FSM	ENSMUSG00000066621.13	ENSMUST00000085701.7	5106	25	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_17	9.68236871271121	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACTGACAAGATTTTTATT	NA	False	NA	-6	True	AATAAA	-17	NA	144160433	144131259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_144132836_144132949_144133070_144133169_144133277_144134709_144134803_144135372_144135509_144135946_144136128_144136547_144136605_144137632_144137713_144137829_144137927_144140225_144140329_144141442_144141571_144142982_144143141_144143234_144143385_144144211_144144368_144145412_144145559_144146677_144147184_144148222_144148369_144149390_144149493_144150873_144150975_144151062_144151238_144153070_144153197_144153720_144153844_144154043_144154227_144155331_144155567_144160312
transcript_46077.known	chr5	-	493	2	FSM	ENSMUSG00000066621.13	ENSMUST00000136018.2	493	2	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCATGTGTTCAAGGCCGAT	NA	False	NA	NA	False	NA	NA	NA	144160376	144155137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_144155567_144160312
transcript_46078.known	chr5	+	955	3	FSM	ENSMUSG00000047843.17	ENSMUST00000056578.7	955	3	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_1	16.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTCTGCAGTCAAGGTAAG	1629	False	NA	3	True	ATTAAA	-16	NA	144192043	144201384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_144192330_144192619_144192723_144200818
transcript_46079.nic	chr5	-	2417	6	ISM	ENSMUSG00000043388.9	ENSMUST00000061446.8	2805	8	9091	0	9091	0	3prime_fragment	TRUE	canonical	2	9	junction_3	3.3466401061363	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGTGTGGCAAGAATATC	NA	False	NA	-15	True	AATAAA	-17	NA	144689368	144672724	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_144674303_144674613_144674727_144680405_144680609_144685466_144685552_144687625_144687793_144689097
transcript_46080.known	chr5	-	5343	18	FSM	ENSMUSG00000038780.15	ENSMUST00000085684.11	5343	18	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_5	38.3797272034027	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCCTTTTTCCTTCCT	NA	False	NA	-14	True	AATAAA	-13	NA	144902657	144813311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_144816267_144817434_144817520_144818427_144818630_144819316_144819438_144820378_144820517_144821392_144821572_144823171_144823287_144826508_144826613_144828124_144828324_144829970_144830118_144831283_144831369_144833299_144833542_144834792_144834869_144835956_144836023_144836174_144836309_144837986_144838096_144839349_144839389_144902310
transcript_46084.known	chr5	+	1632	10	FSM	ENSMUSG00000029621.15	ENSMUST00000031625.15	1632	10	0	0	0	0	multi-exon	TRUE	canonical	3	332	junction_5	31.8084545015595	693	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTTTTCTTTATACTCT	NA	False	NA	22	True	ATTAAA	-23	NA	145020639	145045571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_145020783_145027962_145028057_145029267_145029373_145032861_145033085_145034025_145034134_145037866_145038080_145041251_145041328_145041507_145041702_145043854_145043946_145045186
transcript_4609.nnic	chr10	-	1049	8	NNC	ENSMUSG00000000731.16	novel	1926	14	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	7.19977323905952	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGGTACACCTGGTGGA	NA	False	NA	-9	True	ATTAAA	-16	NA	77874136	77865864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_77866159_77867654_77867724_77870214_77870324_77870419_77870542_77871490_77871668_77872518_77872619_77873706_77873823_77874074
transcript_46098.known	chr5	+	1394	10	FSM	ENSMUSG00000029622.17	ENSMUST00000196111.5	1394	10	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_6	583.199688394301	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAACAAACAACC	8129	False	NA	-84	True	NA	NA	NA	145051121	145064883	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062688_145062777_145063536_145063743_145064445_145064537_145064630
transcript_461.nnic	chr1	+	530	3	Genic_Genomic	ENSMUSG00000025934.16	novel	2792	1	NA	NA	-236	-155	multi-exon	FALSE	non_canonical	0	0	junction_1	0	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACTTACCTAGTCAAAAGTT	NA	False	NA	NA	False	NA	NA	NA	21323508	21326381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr1_+_21323669_21324392_21324598_21326216
transcript_46100.known	chr5	+	3105	10	FSM	ENSMUSG00000029622.17	ENSMUST00000085679.13	3105	10	0	0	0	0	multi-exon	FALSE	canonical	3	1600	junction_4	137.116333413962	1364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGCATGTCTTGTCTGGGT	8032	False	NA	NA	False	AATATA	-15	NA	145051024	145066509	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_145051152_145058466_145058550_145059341_145059447_145060378_145060602_145061396_145061505_145062387_145062595_145062700_145062777_145063536_145063743_145064445_145064537_145064630
transcript_4611.nic	chr10	-	2242	6	ISM	ENSMUSG00000000731.16	ENSMUST00000131028.8	2966	14	5316	8	-34	0	3prime_fragment	FALSE	canonical	2	9	junction_4	3.86781592116274	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGGTACACCTGGTGGA	NA	False	NA	-9	True	ATTAAA	-16	NA	77874128	77865864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_77866159_77867654_77867724_77870214_77870324_77870419_77871668_77872518_77872619_77873706
transcript_4612.known	chr10	+	2814	7	FSM	ENSMUSG00000000732.10	ENSMUST00000105393.3	2814	7	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	4.83045891539648	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTTGTGTCTGGTGGCTT	NA	False	NA	5	True	AATAAA	-17	NA	77905135	77915359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_77905370_77906994_77907114_77907571_77907926_77909540_77909835_77911038_77911189_77912977_77913008_77913726
transcript_46120.known	chr5	-	2353	6	FSM	ENSMUSG00000029623.15	ENSMUST00000031627.9	2353	6	0	0	0	0	multi-exon	FALSE	canonical	3	415	junction_5	28.7708185493566	1476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTTGATGCTTCTGGTTG	NA	False	NA	NA	False	ATTAAA	-18	NA	145077048	145065578	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_145067186_145068174_145068327_145069668_145069791_145071874_145071983_145073711_145073804_145076776
transcript_46127.nic	chr5	-	487	3	ISM	ENSMUSG00000029623.15	ENSMUST00000031627.9	2353	6	-70	6351	-70	1458	5prime_fragment	FALSE	canonical	3	415	junction_2	34	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAAAGAAATCTCTAGACT	NA	False	NA	NA	False	GGGGCT	-18	NA	145077118	145071929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_145071983_145073711_145073804_145076776
transcript_46128.known	chr5	-	3087	9	FSM	ENSMUSG00000029624.11	ENSMUST00000031628.10	3087	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_5	16.4350045634311	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAGTGCGTCTCATATATA	NA	False	NA	2	True	AATAAA	-30	NA	145103918	145084323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_145085316_145088095_145088279_145088927_145089045_145091483_145092189_145095549_145095652_145096284_145096504_145097848_145097990_145101870_145102344_145103763
transcript_46133.known	chr5	+	741	6	FSM	ENSMUSG00000038722.18	ENSMUST00000159018.8	741	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	311.754133894003	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACATTCTTTCTTTTAAG	NA	False	NA	16	True	AATAAA	-17	NA	145077217	145084884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_145077253_145078114_145078171_145079257_145079378_145081708_145081832_145083252_145083420_145084644
transcript_46137.known	chr5	+	867	6	FSM	ENSMUSG00000038722.18	ENSMUST00000162594.8	867	6	0	0	0	0	multi-exon	FALSE	canonical	3	705	junction_1	67.372397908936	445	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTCTTTCTTTTAAGAGTG	NA	False	NA	20	True	AATAAA	-21	NA	145077171	145084888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_145077253_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
transcript_46139.known	chr5	+	928	6	FSM	ENSMUSG00000038722.18	ENSMUST00000160075.2	928	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	298.93035978301	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGCTACATTCTTTCTTTT	NA	False	NA	13	True	AATAAA	-14	NA	145077224	145084881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_145077374_145078114_145078247_145079257_145079378_145081708_145081832_145083252_145083420_145084644
transcript_4614.known	chr10	-	1378	7	FSM	ENSMUSG00000053329.8	ENSMUST00000001242.9	1378	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	5.05799696849784	290	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATGTCTCAGGCCTTGTG	4131	False	NA	-2	True	AATAAA	-29	NA	78005616	77997899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_77998553_77999230_77999388_78000671_78000765_78003228_78003349_78004642_78004757_78005206_78005260_78005428
transcript_46140.known	chr5	+	705	5	FSM	ENSMUSG00000038722.18	ENSMUST00000162308.8	705	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	349.672257263856	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACATTCTTTCTTTTAAG	NA	False	NA	16	True	AATAAA	-17	NA	145077206	145084884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_145077253_145078114_145078247_145079257_145079378_145083252_145083420_145084644
transcript_46144.nnic	chr5	+	1602	9	NNC	ENSMUSG00000029625.17	novel	1713	8	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	275.082260424041	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTTTCATTACTTAA	NA	False	NA	23	True	ATTAAA	-15	NA	145104027	145118851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_145104049_145104157_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115642_145115739_145117945
transcript_46148.known	chr5	+	1756	8	FSM	ENSMUSG00000029625.17	ENSMUST00000160422.8	1756	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	266.097419631784	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTGTGTTTCATTACTTA	NA	False	NA	22	True	ATTAAA	-14	NA	145104056	145118850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115567_145115739_145117945
transcript_46149.known	chr5	+	1387	8	FSM	ENSMUSG00000029625.17	ENSMUST00000162244.8	1387	8	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_6	148.975001327096	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAGGGGCGCCAGGCTCCCC	NA	False	NA	NA	False	NA	NA	NA	145104063	145118563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115642_145115739_145117945
transcript_4615.known	chr10	-	632	6	FSM	ENSMUSG00000053329.8	ENSMUST00000219120.2	632	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	14.8808601901906	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TGTAGACCAGAAAAACAAGG	4139	False	NA	NA	False	NA	NA	NA	78005608	77998544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_77998553_77999230_77999388_78003228_78003349_78004642_78004757_78005206_78005260_78005428
transcript_46150.known	chr5	+	1713	8	FSM	ENSMUSG00000029625.17	ENSMUST00000160629.8	1713	8	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_6	186.36939400129	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTTTCATTACTTAA	NA	False	NA	23	True	ATTAAA	-15	NA	145104022	145118851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_145104270_145107324_145107376_145110116_145110270_145112366_145112463_145112920_145113015_145114039_145114113_145115645_145115739_145117945
transcript_46156.known	chr5	-	540	5	FSM	ENSMUSG00000038690.16	ENSMUST00000037056.9	540	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	2948.80004196622	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATACTGCTTGCCTGGTGT	9969	False	NA	-13	True	AATAAA	-14	NA	145128402	145120518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145125002_145125069_145128312
transcript_46157.known	chr5	-	607	5	FSM	ENSMUSG00000038690.16	ENSMUST00000162360.8	607	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	2943.81371480941	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTGCCTGGTGTAGT	9969	False	NA	-10	True	AATAAA	-17	NA	145128402	145120515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145125002_145125133_145128312
transcript_46158.known	chr5	-	955	4	FSM	ENSMUSG00000038690.16	ENSMUST00000161741.8	955	4	0	0	0	0	multi-exon	FALSE	canonical	3	4948	junction_3	568.415341101909	3874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGGTGTAGTCATTGTTC	9499	False	NA	-2	True	AATAAA	-25	NA	145128872	145120507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_145120678_145121341_145121459_145123935_145124044_145128312
transcript_46162.known	chr5	-	1967	3	FSM	ENSMUSG00000029627.13	ENSMUST00000031632.9	1967	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	1	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCAGTTGTTTCTTTGTCT	1591	False	NA	NA	False	NA	NA	NA	145138678	145131755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_145133010_145135486_145135611_145138089
transcript_46163.nnic	chr5	-	1560	3	NNC	ENSMUSG00000029627.13	novel	1967	3	NA	NA	-2221	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	9.5	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCAGTTGTTTCTTTGTCT	NA	False	NA	NA	False	NA	NA	NA	145140899	145131755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_-_145133010_145135486_145135611_145140717
transcript_46164.known	chr5	+	3794	6	FSM	ENSMUSG00000055991.16	ENSMUST00000085671.10	3794	6	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	9.08625335328044	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGACTTGAGGTTTCTCTC	937	False	NA	10	True	ATTAAA	-15	NA	145141371	145158560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_145142519_145144385_145144519_145148555_145148639_145149314_145149451_145155096_145155694_145156862
transcript_46165.nic	chr5	+	2723	5	NIC	ENSMUSG00000055991.16	novel	378	4	NA	NA	-60	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	28.4901298698339	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGACTTGAGGTTTCTCTC	4883	False	NA	10	True	ATTAAA	-15	NA	145145317	145158560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_145145527_145148555_145148639_145149314_145149451_145155096_145155694_145156862
transcript_46167.known	chr5	+	1765	5	FSM	ENSMUSG00000007812.17	ENSMUST00000200039.5	1765	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	167.334059593377	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAAATGCTTGATGTCTTG	1291	False	NA	NA	False	AATAAA	-16	NA	145168524	145175132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145172546_145172674_145173859
transcript_46168.known	chr5	+	4157	5	FSM	ENSMUSG00000007812.17	ENSMUST00000199322.5	4157	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	175.330402383614	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTAGACTCTTTGTTTTGA	1331	False	NA	15	True	NA	NA	NA	145168564	145184111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145179729_145179835_145180384
transcript_4617.known	chr10	-	3872	21	FSM	ENSMUSG00000032834.12	ENSMUST00000042556.11	3872	21	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_16	14.9260678009984	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTTTGTCTGTGTGTGG	NA	False	NA	-5	True	AATACA	-17	NA	78020983	78006742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_78007969_78009214_78009290_78009406_78009558_78009666_78009886_78010764_78010831_78011319_78011429_78012086_78012235_78012789_78012971_78013583_78013735_78013999_78014148_78014261_78014411_78014794_78014932_78015548_78015620_78015959_78016104_78016882_78017113_78017344_78017481_78018219_78018364_78018456_78018557_78018779_78018875_78019891_78020005_78020904
transcript_46173.known	chr5	+	1150	4	FSM	ENSMUSG00000007812.17	ENSMUST00000196069.5	1150	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	192.902969276151	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTGTACTTTTTGTAG	1305	False	NA	NA	False	AATACA	-16	NA	145168538	145174658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_145168642_145170250_145170413_145172115_145172202_145173859
transcript_46174.known	chr5	+	597	4	FSM	ENSMUSG00000007812.17	ENSMUST00000085661.9	597	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	194.635271440941	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGATGCCACCATTATGTAAA	1333	False	NA	NA	False	NA	NA	NA	145168566	145174092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_145168642_145170250_145170413_145172546_145172674_145173859
transcript_46175.known	chr5	+	4104	4	FSM	ENSMUSG00000007812.17	ENSMUST00000167316.8	4104	4	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_2	68.241401574769	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTAGACTCTTTGTTTTGAG	1299	False	NA	16	True	NA	NA	NA	145168532	145184112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_145168642_145170250_145170413_145179729_145179835_145180384
transcript_46178.known	chr5	+	601	3	FSM	ENSMUSG00000007812.17	ENSMUST00000199003.5	601	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	213	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTTGTGTGAAATGCCA	1332	False	NA	NA	False	CATAAA	-17	NA	145168565	145174222	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_145168642_145170250_145170413_145173859
transcript_46179.known	chr5	-	2388	5	FSM	ENSMUSG00000029634.16	ENSMUST00000067837.10	2388	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_4	36.6401419211225	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAACCTTTAAAATGTTT	2760	False	NA	NA	False	AGTAAA	-24	NA	146157786	146146766	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146157749
transcript_46180.known	chr5	-	3452	5	FSM	ENSMUSG00000029634.16	ENSMUST00000161859.8	3452	5	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_4	27.6348964173923	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGTGTGCAAACTTATTTC	2181	False	NA	NA	False	ATTAAA	-28	NA	146158365	146146001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_146148743_146152906_146153003_146154710_146154907_146157211_146157295_146158029
transcript_46184.known	chr5	+	2467	13	FSM	ENSMUSG00000029635.16	ENSMUST00000161181.8	2467	13	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	40.014580675882	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAACAAGGTGTTATGTAA	NA	False	NA	NA	False	AATAAA	-19	NA	146168059	146239641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_146168145_146196314_146196391_146205024_146205136_146208404_146208546_146220438_146220497_146222917_146223050_146229448_146229578_146231972_146232043_146233168_146233242_146235612_146235711_146236307_146236387_146236501_146236661_146238385
transcript_46185.known	chr5	+	5196	10	FSM	ENSMUSG00000029636.12	ENSMUST00000016143.9	5196	10	0	0	0	0	multi-exon	TRUE	canonical	3	97	junction_1	19.5037191768236	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTCTGCTTATTTATA	NA	False	NA	15	True	AATAAA	-19	NA	146321794	146410425	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_146322149_146358727_146358816_146372134_146372278_146388680_146388816_146390125_146390280_146392353_146392472_146397774_146397951_146403607_146403875_146405024_146405390_146407029
transcript_46189.known	chr5	+	1856	6	FSM	ENSMUSG00000041453.13	ENSMUST00000035983.12	1856	6	0	0	0	0	multi-exon	FALSE	canonical	3	6955	junction_1	2705.44403749181	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTTGTTAGTGATGGTT	NA	False	NA	NA	False	ATTAAA	-19	NA	146769699	146773842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_146769982_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
transcript_46191.known	chr5	+	1067	6	FSM	ENSMUSG00000041453.13	ENSMUST00000099272.3	1067	6	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	5077.72757835629	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTGAAGTGTTTTCCTTAG	NA	False	NA	2	True	AATAAA	-16	NA	146770011	146772796	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_146770551_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
transcript_46193.known	chr5	+	899	6	FSM	ENSMUSG00000041453.13	ENSMUST00000075453.9	899	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	5104.64844626934	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTGAAGTGTTTTCCTTA	NA	False	NA	1	True	AATAAA	-15	NA	146770004	146772795	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_146770377_146770993_146771073_146771257_146771320_146771801_146771915_146772373_146772525_146772673
transcript_462.known	chr1	+	347	1	FSM	ENSMUSG00000100775.2	ENSMUST00000190910.2	347	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGAATTATTTTCTTGT	NA	False	NA	NA	False	AATAAA	-23	NA	23332809	23333156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_23332800_23333200
transcript_46201.known	chr5	+	1126	4	FSM	ENSMUSG00000029641.9	ENSMUST00000031646.8	1126	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0.816496580927726	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTGTTTTCTGAATGT	NA	False	NA	NA	False	ATTAAA	-18	NA	146781880	146784536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_146782151_146782469_146782527_146782649_146782730_146783817
transcript_46202.known	chr5	+	1298	9	FSM	ENSMUSG00000016503.19	ENSMUST00000146511.8	1298	9	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_8	56.9906790624572	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGCTGTTTCCGTCGT	NA	False	NA	23	True	ATTAAA	-23	NA	146885466	146892424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933_146891994_146892177
transcript_46203.known	chr5	+	1426	8	FSM	ENSMUSG00000016503.19	ENSMUST00000132102.2	1426	8	0	0	0	0	multi-exon	FALSE	canonical	3	430	junction_2	50.1141553997328	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCCGACTCTTTGCTGTT	NA	False	NA	15	True	ATTAAA	-15	NA	146885514	146892416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_146885786_146887342_146887444_146887996_146888094_146888683_146888773_146889536_146889611_146890036_146890118_146890657_146890888_146891933
transcript_46204.known	chr5	-	1257	5	FSM	ENSMUSG00000016510.12	ENSMUST00000110564.8	1257	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	53.0023584380922	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGGAGTGAGGAAGACAG	NA	False	NA	NA	False	GGGGCT	-7	NA	146900559	146892176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900030_146900191_146900521
transcript_46205.known	chr5	-	2131	5	FSM	ENSMUSG00000016510.12	ENSMUST00000016654.9	2131	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	53.5863788662753	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGCTGTGCATTTGTGCTA	NA	False	NA	2	True	NA	NA	NA	146900597	146891329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900030_146900191_146900532
transcript_46206.known	chr5	-	4927	4	FSM	ENSMUSG00000016510.12	ENSMUST00000066675.10	4927	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	27.6445694888204	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGTCTCGGGGAATATAAAC	NA	False	NA	NA	False	AATAAA	-17	NA	146900595	146888382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900521
transcript_46207.known	chr5	-	1134	4	FSM	ENSMUSG00000016510.12	ENSMUST00000110566.2	1134	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_3	16.996731711976	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAGGAGTGAGGAAGACAG	NA	False	NA	NA	False	GGGGCT	-7	NA	146900607	146892176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_146892626_146893596_146893755_146895634_146896087_146900532
transcript_4621.known	chr10	-	5980	10	FSM	ENSMUSG00000001211.16	ENSMUST00000001240.12	5980	10	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_9	65.0870262621847	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGACTCTCTGCCTCTTTTT	NA	False	NA	-3	True	CATAAA	-22	NA	78188276	78105011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_78109610_78109905_78110105_78113843_78113920_78118207_78118311_78118928_78119083_78120022_78120185_78120828_78120999_78123680_78123908_78165109_78165171_78188046
transcript_46210.nnic	chr5	+	1850	5	NNC	ENSMUSG00000106820.2	novel	1081	3	NA	NA	-12	-270	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	38.382124745772	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAGTGATGATTTGAATATG	NA	False	NA	4	True	NA	NA	NA	147355398	147359584	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_147355512_147357439_147357607_147357723_147358028_147358173_147358480_147358624
transcript_46212.known	chr5	+	1081	3	FSM	ENSMUSG00000106820.2	ENSMUST00000201128.2	1081	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	30.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGAGTTGTCTTGGTCAT	NA	False	NA	NA	False	NA	NA	NA	147355410	147359854	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_147355512_147357439_147357607_147359041
transcript_46215.known	chr5	+	1579	6	FSM	ENSMUSG00000029649.11	ENSMUST00000031654.10	1579	6	0	0	0	0	multi-exon	FALSE	canonical	3	2983	junction_1	193.876661823954	1763	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATACTGTTTGTGGACTCTG	NA	False	NA	NA	False	AATAAA	-26	NA	147797270	147813266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_147797502_147799362_147799461_147805532_147805594_147806221_147806324_147809375_147809470_147812273
transcript_46217.known	chr5	+	383	5	FSM	ENSMUSG00000029649.11	ENSMUST00000201376.4	383	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	1373.19026358331	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGCTGTAATAAGGGGCCC	NA	False	NA	NA	False	NA	NA	NA	147797437	147812331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_147797502_147799362_147799461_147805532_147805594_147806221_147806324_147812273
transcript_46219.known	chr5	-	2210	6	FSM	ENSMUSG00000029650.11	ENSMUST00000118527.8	2210	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	0.894427190999916	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGTGGTTTTCATTTTTCC	NA	False	NA	NA	False	AATGAA	-30	NA	147831625	147815246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_147816025_147816502_147816660_147821006_147821091_147822780_147823652_147830642_147830856_147831518
transcript_4622.known	chr10	-	1852	12	FSM	ENSMUSG00000061032.10	ENSMUST00000219374.2	1852	12	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_11	269.317686996093	466	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCTGCTTCTCCCATTTTT	NA	False	NA	-17	True	AATAAA	-21	NA	78248826	78236217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_78236819_78237683_78237801_78238258_78238279_78238443_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399_78241530_78244246_78244309_78244967_78245054_78246799_78246858_78248653
transcript_46221.known	chr5	+	1009	4	FSM	ENSMUSG00000029651.17	ENSMUST00000085554.5	1009	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	28.87136220471	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAAGAATTATTGGGAAATG	NA	False	NA	NA	False	NA	NA	NA	148239983	148250810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_148240080_148240292_148240413_148243439_148243538_148250115
transcript_46226.known	chr5	+	585	4	FSM	ENSMUSG00000029651.17	ENSMUST00000152105.8	585	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	27.4752413799932	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCCTCCTCTGGA	NA	False	NA	15	True	ATTAAA	-23	NA	148239974	148250270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_148240187_148240292_148240413_148243439_148243538_148250115
transcript_4623.known	chr10	-	1984	13	FSM	ENSMUSG00000061032.10	ENSMUST00000062678.11	1984	13	0	0	0	0	multi-exon	FALSE	canonical	3	782	junction_1	71.0948115000119	1031	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCTGCTTCTCCCATTT	NA	False	NA	-19	True	AATAAA	-19	NA	78248877	78236219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_78236819_78237683_78237801_78238258_78238279_78238443_78238542_78239338_78239419_78240758_78241121_78241248_78241314_78241399_78241530_78244246_78244309_78244967_78245054_78246799_78246858_78247237_78247321_78248653
transcript_46233.known	chr5	+	550	2	FSM	ENSMUSG00000086494.2	ENSMUST00000150265.2	550	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATACATCTACCCTTTGA	NA	False	NA	NA	False	TTTAAA	-5	NA	148678649	148679949	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_148678795_148679544
transcript_46234.nnic	chr5	+	568	2	NNC	ENSMUSG00000086494.2	novel	550	2	NA	NA	-50	4	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	0	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATCTACCCTTTGACCCA	NA	False	NA	NA	False	TTTAAA	-9	NA	148678599	148679953	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_148678795_148679580
transcript_46236.known	chr5	-	690	2	FSM	ENSMUSG00000108207.3	ENSMUST00000204570.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCATGTGTCTGTATCAT	NA	False	NA	-5	True	ATTAAA	-13	NA	148896514	148895407	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_148895541_148895957
transcript_46237.known	chr5	-	792	1	FSM	ENSMUSG00000108207.3	ENSMUST00000204589.2	792	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTCCACATGTTAATTTG	NA	False	NA	NA	False	AATACA	-14	NA	148896490	148895698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_148895700_148896500
transcript_46239.known	chr5	-	2838	5	FSM	ENSMUSG00000066551.13	ENSMUST00000085546.13	2838	5	0	0	0	0	multi-exon	FALSE	canonical	3	5649	junction_4	1171.94720444225	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAACGTCTTTGTAACTTT	6764	False	NA	NA	False	TTTAAA	-18	NA	148989850	148983511	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_148985724_148986536_148986712_148987104_148987251_148987397_148987562_148989709
transcript_4624.known	chr10	-	600	3	FSM	ENSMUSG00000061032.10	ENSMUST00000218962.2	600	3	0	0	0	0	multi-exon	FALSE	canonical	3	930	junction_1	74	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGGGCCCCAGCCTGTCC	3067	False	NA	NA	False	NA	NA	NA	78241572	78240758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_78241121_78241248_78241314_78241399
transcript_46242.known	chr5	-	923	4	FSM	ENSMUSG00000066551.13	ENSMUST00000139443.8	923	4	0	0	0	0	multi-exon	FALSE	canonical	3	5649	junction_3	1332.80464518331	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTTAAACTTTAAGCTTG	6793	False	NA	NA	False	AATAAA	-2	NA	148989821	148986210	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_148986712_148987104_148987251_148987397_148987562_148989709
transcript_46244.known	chr5	-	654	3	FSM	ENSMUSG00000066551.13	ENSMUST00000133667.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	3	5649	junction_2	1488.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTTTAGAAATTGCTCAAAA	6788	False	NA	NA	False	NA	NA	NA	148989826	148986877	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_148987251_148987397_148987562_148989709
transcript_46247.known	chr5	-	461	2	FSM	ENSMUSG00000066551.13	ENSMUST00000123645.2	461	2	0	0	0	0	multi-exon	FALSE	canonical	3	5649	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATGAAAACCTACATCC	6823	False	NA	NA	False	NA	NA	NA	148989791	148987182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_148987562_148989709
transcript_4625.known	chr10	+	603	3	FSM	ENSMUSG00000005054.8	ENSMUST00000005185.8	603	3	0	0	0	0	multi-exon	TRUE	canonical	3	3631	junction_2	117.5	2024	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATTGTGTCCTTAGTTTT	NA	False	NA	23	True	AATATA	-18	NA	78261502	78263456	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_78261692_78262760_78262863_78263144
transcript_46251.known	chr5	+	3148	10	FSM	ENSMUSG00000041264.17	ENSMUST00000100410.10	3148	10	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_9	101.142119787266	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTGTTGGTTTCATTTT	NA	False	NA	13	True	ATTAAA	-13	NA	149121475	149152241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
transcript_46252.known	chr5	+	3757	9	FSM	ENSMUSG00000041264.17	ENSMUST00000050472.16	3757	9	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	75.8798392196504	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGTTTCATTTTGTG	NA	False	NA	16	True	ATTAAA	-16	NA	149121369	149152244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_149121617_149124517_149124687_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
transcript_46254.known	chr5	+	2931	9	FSM	ENSMUSG00000041264.17	ENSMUST00000117878.8	2931	9	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_8	110.241141934398	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTGGTTTCATTTTGT	NA	False	NA	15	True	ATTAAA	-15	NA	149121525	149152243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161_149150333_149150832
transcript_46255.known	chr5	+	3792	8	FSM	ENSMUSG00000041264.17	ENSMUST00000121416.8	3792	8	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	82.9762690441658	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTTTTTGTTGGTTTCAT	NA	False	NA	10	True	ATTAAA	-10	NA	149121159	149152238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_149121617_149125154_149125284_149130649_149131251_149135454_149135569_149138569_149138700_149141078_149141205_149146452_149146611_149150161
transcript_46256.known	chr5	+	1251	5	FSM	ENSMUSG00000060063.10	ENSMUST00000071130.5	1251	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	7.22841614740048	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGAGTCTTTTATTGAC	NA	False	NA	20	True	ATTAAA	-32	NA	149201576	149224963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_149201993_149209190_149209291_149215985_149216057_149222153_149222236_149224381
transcript_46258.nic	chr5	+	928	4	ISM	ENSMUSG00000029658.18	ENSMUST00000202902.2	2574	23	67619	0	15574	0	3prime_fragment	FALSE	canonical	1	2	junction_1	0.816496580927726	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATCAGATTCTCGCTGTT	NA	False	NA	NA	False	NA	NA	NA	149520816	149535359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_+_149521054_149522668_149522863_149529753_149529852_149534960
transcript_4626.known	chr10	-	5124	11	FSM	ENSMUSG00000032788.16	ENSMUST00000041616.15	5124	11	0	0	0	0	multi-exon	TRUE	canonical	3	285	junction_4	40.3910881259715	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTAGTGTGGTCATTTCT	6802	False	NA	-2	True	AATAAA	-17	NA	78300809	78272577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_78276748_78276970_78277038_78279614_78279752_78280816_78280929_78282783_78282830_78283728_78283815_78285063_78285111_78286116_78286201_78287312_78287418_78289307_78289363_78300594
transcript_46265.nic	chr5	-	3391	19	NIC	ENSMUSG00000029657.16	novel	3802	18	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	169	junction_18	290.373753405274	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTTGGCTTTGTCTCC	NA	False	NA	-6	True	AATAAA	-24	NA	149559853	149540309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434_149559625_149559784
transcript_46268.known	chr5	-	3802	18	FSM	ENSMUSG00000029657.16	ENSMUST00000202361.4	3802	18	0	0	0	0	multi-exon	FALSE	canonical	3	1194	junction_12	107.653101726883	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGAGTTCTTTTGTTGTC	NA	False	NA	11	True	TTTAAA	-13	NA	149559803	149540008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149546929_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
transcript_46278.known	chr5	-	3240	17	FSM	ENSMUSG00000029657.16	ENSMUST00000074846.14	3240	17	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	344.38590613402	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCTGTTGGCTTTGTCTCC	NA	False	NA	-6	True	AATAAA	-24	NA	149559674	149540309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_149541176_149541851_149542014_149542210_149542331_149542425_149542534_149543341_149543468_149544010_149544149_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
transcript_46282.known	chr5	-	4764	12	FSM	ENSMUSG00000029657.16	ENSMUST00000201431.4	4764	12	0	0	0	0	multi-exon	FALSE	canonical	3	1194	junction_6	83.4292891075534	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATGAAAAGAAAGTTGATC	NA	False	NA	NA	False	NA	NA	NA	149559803	149544146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_149547062_149548433_149548643_149550719_149550854_149551000_149551108_149552665_149552895_149553251_149553497_149553803_149553938_149554224_149554325_149554851_149554975_149555498_149555640_149557294_149557353_149559434
transcript_46288.known	chr5	+	299	2	FSM	ENSMUSG00000106674.2	ENSMUST00000202583.2	299	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAGGCAAGAGTAAACTTG	NA	False	NA	NA	False	AATAAA	-18	NA	149565074	149571255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_149565217_149571098
transcript_46290.known	chr5	+	4570	15	FSM	ENSMUSG00000051950.11	ENSMUST00000100404.6	4570	15	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_13	51.6933659344471	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTTGGCTTCTGTTGTCT	NA	False	NA	14	True	AATAAA	-22	NA	149601694	149686064	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_+_149601845_149619889_149619940_149626743_149626784_149632784_149632895_149648875_149648953_149650218_149650331_149653388_149653526_149656137_149656202_149658834_149658955_149662996_149663067_149668890_149669005_149669969_149670070_149673895_149674016_149677529_149677675_149682903
transcript_46291.nic	chr5	+	1383	14	NIC	ENSMUSG00000051950.11	novel	4570	15	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_13	156.846059531416	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAACAGAATTCACTGTAA	NA	False	NA	NA	False	AATAAA	-18	NA	149601680	149674600	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_149601845_149619889_149619940_149626743_149626784_149632784_149632895_149648875_149648953_149650218_149650331_149653388_149653526_149656137_149656202_149658834_149658955_149662996_149663067_149668890_149669005_149669969_149670070_149673895_149674016_149674495
transcript_46292.nnic	chr5	+	1104	11	NNC	ENSMUSG00000051950.11	novel	4570	15	NA	NA	-14	-9935	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_10	165.154503420282	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGAAATGAGTGTTTGTTCA	NA	False	NA	NA	False	ATTAAA	-31	NA	149601680	149664665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr5_+_149601845_149619889_149619940_149626743_149626784_149632784_149632895_149648875_149648953_149650218_149650331_149653388_149653526_149656137_149656202_149658834_149658955_149662996_149663067_149664505
transcript_46294.nic	chr5	+	1172	7	NIC	ENSMUSG00000056602.14	novel	592	4	NA	NA	-33	425	combination_of_known_junctions	FALSE	canonical	3	15	junction_5	2.26691175145591	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTTCTCTCTTCTCAAA	1242	False	NA	NA	False	AAGAAA	-26	NA	150119897	150269814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr5_+_150120201_150233734_150233935_150249595_150249650_150263817_150263958_150269017_150269109_150269315_150269396_150269510
transcript_46295.known	chr5	-	1905	5	FSM	ENSMUSG00000041132.12	ENSMUST00000016279.11	1905	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGGGTTTTCCATTGAA	4563	False	NA	0	True	ATTAAA	-22	NA	150517990	150495108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_150496458_150497464_150497542_150499714_150499804_150500104_150500233_150517728
transcript_46298.known	chr5	-	1371	3	FSM	ENSMUSG00000041132.12	ENSMUST00000200840.2	1371	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATATGTCTTGTCTTTCAA	4560	False	NA	NA	False	AATAAA	-17	NA	150517993	150515216	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_150516025_150516604_150516903_150517728
transcript_463.known	chr1	-	2289	10	FSM	ENSMUSG00000026155.14	ENSMUST00000027339.14	2289	10	0	0	0	0	multi-exon	FALSE	canonical	3	380	junction_6	35.0269737329517	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTTTATTTGTGGGTTTT	NA	False	NA	-2	True	ATTAAA	-17	NA	23961398	23884705	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_23885645_23887344_23887653_23888383_23888550_23892503_23892632_23898103_23898195_23905297_23905379_23915454_23915531_23916789_23916876_23930940_23931075_23961118
transcript_46300.known	chr5	-	8982	6	FSM	ENSMUSG00000029655.18	ENSMUST00000118316.8	8982	6	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_5	18.6010752377383	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCTTTTGTTTCTTAATT	5437	False	NA	NA	False	AATAAA	-15	NA	150589077	150559436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_150566781_150570465_150570543_150570924_150571014_150574079_150574205_150584743_150585979_150588965
transcript_46308.nic	chr5	-	2175	2	ISM	ENSMUSG00000029655.18	ENSMUST00000144378.2	3842	3	-66	12272	-31	1935	5prime_fragment	FALSE	canonical	3	228	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAATAGCATCAGATCTCC	5406	False	NA	NA	False	NA	NA	NA	150589108	150583946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_150585979_150588965
transcript_46309.nic	chr5	-	597	2	ISM	ENSMUSG00000029655.18	ENSMUST00000144378.2	3842	3	-66	13850	-31	357	5prime_fragment	FALSE	canonical	3	228	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGACAAGAAGAAAAACAG	5406	False	NA	NA	False	NA	NA	NA	150589108	150585524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr5_-_150585979_150588965
transcript_4631.nic	chr10	+	2580	16	NIC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	-58	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	39.9503024602651	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5317	False	NA	30	True	AATAAA	-39	NA	78410251	78420336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_78410669_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
transcript_46312.known	chr5	-	1317	9	FSM	ENSMUSG00000033970.16	ENSMUST00000038131.10	1317	9	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_1	24.5098832106561	292	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGAGTATTTTGCTTACA	NA	False	NA	60	True	TTTAAA	-40	NA	151574707	151566220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr5_-_151566569_151567175_151567246_151568077_151568177_151568254_151568392_151568982_151569165_151570903_151571002_151571709_151571778_151573336_151573475_151574530
transcript_46315.known	chr6	-	5330	2	FSM	ENSMUSG00000047735.15	ENSMUST00000120087.6	5330	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTTCTAAATTATTTC	-13	True	NA	NA	False	AATAAA	-20	NA	3399572	3372256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_3377282_3399267
transcript_46317.known	chr6	+	3788	28	FSM	ENSMUSG00000001376.18	ENSMUST00000001412.17	3788	28	0	0	0	0	multi-exon	FALSE	canonical	2	105	junction_25	21.3495308879564	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCTGTCTTTGAATTCAA	NA	False	NA	NA	False	TATAAA	-22	NA	3498381	3603531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_3498556_3504868_3504938_3516621_3516745_3517788_3517861_3519216_3519271_3520206_3520278_3522255_3522374_3522682_3522719_3524092_3524176_3532157_3532201_3533471_3533571_3536831_3536973_3545509_3545643_3551012_3551105_3554995_3555091_3555367_3555467_3562267_3562359_3565515_3565693_3567734_3567854_3571001_3571109_3578793_3578916_3588005_3588087_3592426_3592576_3594017_3594115_3594742_3594902_3598471_3598594_3600127_3600318_3602659
transcript_46319.known	chr6	+	1587	6	FSM	ENSMUSG00000001376.18	ENSMUST00000184780.8	1587	6	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_1	10.4575331699211	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCCAGAAGCTCCAGTTC	6	True	NA	NA	False	NA	NA	NA	3498425	3521345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_3498556_3504868_3504938_3516621_3516745_3517788_3517861_3519216_3519271_3520206
transcript_46321.known	chr6	-	1516	4	FSM	ENSMUSG00000032757.7	ENSMUST00000049166.5	1516	4	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_1	40.3016404408335	117	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTGTGTGTTCTTGGCAT	NA	False	NA	0	True	ATTAAA	-22	NA	4086972	4076898	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_4078037_4079960_4080018_4082457_4082583_4086776
transcript_46326.known	chr6	-	1696	11	FSM	ENSMUSG00000004631.16	ENSMUST00000115579.8	1696	11	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	4.92848861214064	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGGTAAAATTTCTTTC	9868	False	NA	NA	False	AATAAA	-36	NA	4747204	4674349	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_4674633_4678066_4678111_4689578_4689768_4690468_4690496_4691428_4691641_4694021_4694185_4707073_4707273_4711307_4711381_4717920_4718079_4719373_4719497_4746979
transcript_46327.known	chr6	-	2014	9	FSM	ENSMUSG00000029759.10	ENSMUST00000129344.8	2014	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	14.8492424049175	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATGAAAAAAAATATATG	19	True	NA	NA	False	AATAAA	-43	NA	5256233	5220851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_5221723_5230400_5230530_5230748_5230831_5232323_5232525_5236871_5236999_5240812_5240979_5246047_5246334_5254515_5254587_5256152
transcript_46328.known	chr6	-	1837	9	FSM	ENSMUSG00000029759.10	ENSMUST00000031773.9	1837	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	13.4350288425444	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATGAAAAAAAATATATG	-2	True	NA	NA	False	AATAAA	-43	NA	5256286	5220851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_5221723_5230400_5230530_5230748_5230831_5232323_5232525_5236871_5236999_5240812_5240979_5246277_5246334_5254515_5254587_5256152
transcript_46333.nic	chr6	-	1951	10	NIC	ENSMUSG00000032667.18	novel	2409	9	NA	NA	-50	-477	combination_of_known_junctions	FALSE	canonical	2	4	junction_8	3.91893157523298	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATTTGTTTGTTTGTTTA	89	False	NA	NA	False	AATAAA	-28	NA	5298380	5264623	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_5265480_5266111_5266241_5266964_5267047_5268977_5269179_5272324_5272452_5273000_5273167_5277871_5277928_5278718_5278813_5289012_5289084_5298211
transcript_46334.known	chr6	-	2409	9	FSM	ENSMUSG00000032667.18	ENSMUST00000057792.9	2409	9	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_7	2.57087047515039	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCGTCTTCTCGAAGCCT	14	False	NA	NA	False	ATTAAA	-40	NA	5298455	5264146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_5265480_5266111_5266241_5266964_5267047_5268977_5269179_5272324_5272452_5273000_5273167_5277871_5277928_5289012_5289084_5298211
transcript_46336.known	chr6	-	3121	18	FSM	ENSMUSG00000015112.16	ENSMUST00000188414.4	3121	18	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_9	125.074538329783	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGATTGCTTGCTCTTGTG	NA	False	NA	-4	True	AATAAA	-15	NA	6217173	6041218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
transcript_46337.nnic	chr6	-	2972	17	NIC	ENSMUSG00000015112.16	novel	3067	18	NA	NA	7	0	combination_of_known_splicesites	FALSE	canonical	3	53	junction_15	193.208396233187	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGATTGCTTGCTCTTGTGT	NA	False	NA	-3	True	AATAAA	-16	NA	6217166	6041217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_6042333_6042558_6042650_6042740_6042900_6052764_6052904_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6191263_6191318_6216995
transcript_4634.nic	chr10	+	2285	16	NIC	ENSMUSG00000032763.12	novel	2329	16	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	41.9345521815444	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5346	False	NA	30	True	AATAAA	-39	NA	78410280	78420336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_78410403_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
transcript_46341.nic	chr6	-	2196	15	NIC	ENSMUSG00000015112.16	novel	616	4	NA	NA	22	167	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	212.439631280925	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACACATGTGTTATTGTTT	NA	False	NA	-5	True	AATAAA	-18	NA	6217151	6068099	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_6068700_6073401_6073543_6095146_6095228_6096669_6096723_6109180_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
transcript_46345.nic	chr6	-	1583	11	ISM	ENSMUSG00000015112.16	ENSMUST00000188414.4	3121	18	22	67700	22	6069	5prime_fragment	FALSE	canonical	3	190	junction_2	147.487084180277	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTTAGTGAGTTTTTG	NA	False	NA	NA	False	AATAAA	-14	NA	6217151	6108918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_6109340_6109936_6110025_6113937_6114023_6114224_6114319_6114969_6115109_6117098_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
transcript_46347.nic	chr6	-	862	6	ISM	ENSMUSG00000015112.16	ENSMUST00000188414.4	3121	18	9	75787	9	-2018	5prime_fragment	FALSE	canonical	3	590	junction_1	45.2972405340546	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACGTGATCATGTATATTA	NA	False	NA	NA	False	AATAAA	-23	NA	6217164	6117005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_6117246_6131628_6131769_6152407_6152524_6180970_6181114_6191263_6191318_6216995
transcript_4635.known	chr10	+	2329	16	FSM	ENSMUSG00000032763.12	ENSMUST00000105384.5	2329	16	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	41.9345521815444	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGTATACTGGTTTATT	5399	False	NA	30	True	AATAAA	-39	NA	78410333	78420336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_78410500_78410920_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
transcript_46354.known	chr6	-	1472	3	FSM	ENSMUSG00000042541.11	ENSMUST00000041111.10	1472	3	0	0	0	0	multi-exon	FALSE	canonical	3	3186	junction_2	110.5	2145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATACAAAGTTATATCAAA	-25	True	NA	NA	False	AATAAA	-17	NA	6578658	6557293	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_6558492_6560407_6560502_6578478
transcript_46355.known	chr6	+	4323	2	FSM	ENSMUSG00000042505.7	ENSMUST00000040826.6	4323	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAACGATCACAGCTGATG	-18	True	NA	NA	False	AATAAA	-20	NA	6956003	7042979	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_6956201_7038853
transcript_46364.known	chr6	-	2001	12	FSM	ENSMUSG00000029752.13	ENSMUST00000031766.12	2001	12	0	0	0	0	multi-exon	FALSE	canonical	3	8132	junction_7	319.487761505924	5181	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCCTGGTTGTGGGTAC	1567	False	NA	-9	True	AATAAA	-17	NA	7693254	7675168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_7675525_7675992_7676149_7676234_7676317_7677230_7677332_7677939_7678047_7680084_7680212_7681249_7681378_7681933_7682036_7682270_7682457_7685168_7685407_7689251_7689524_7693108
transcript_46365.known	chr6	+	3710	12	FSM	ENSMUSG00000042447.14	ENSMUST00000040017.8	3710	12	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_5	31.0917065288484	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGAAACTTTTTTCTTTT	-18	True	NA	NA	False	AATAAA	-24	NA	8209221	8236274	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_8209412_8211579_8211639_8214765_8216100_8216371_8216471_8222460_8222716_8224554_8224725_8226843_8226910_8227968_8228128_8231160_8231314_8233049_8233255_8234231_8234362_8235384
transcript_46368.nnic	chr6	-	607	4	NNC	ENSMUSG00000012483.5	novel	670	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	677.807412831174	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTGGTCAATTGTTTT	NA	False	NA	-11	True	AATAAA	-14	NA	8259173	8255935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_8256185_8256694_8256804_8257686_8257762_8258999
transcript_46371.known	chr6	-	670	4	FSM	ENSMUSG00000012483.5	ENSMUST00000012627.5	670	4	0	0	0	0	multi-exon	FALSE	canonical	3	1410	junction_2	59.4474557908074	777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTGGTCAATTGTTTT	NA	False	NA	-11	True	AATAAA	-14	NA	8259173	8255935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_8256248_8256694_8256804_8257686_8257762_8258999
transcript_46375.known	chr6	+	2025	4	FSM	ENSMUSG00000089862.9	ENSMUST00000159433.8	2025	4	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_2	5.43650214343336	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAAAATGGCTTTCATTGC	10	True	NA	NA	False	AATAAA	-22	NA	8259429	8428760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_8259494_8270472_8270582_8373905_8373968_8426970
transcript_46377.known	chr6	-	2075	14	FSM	ENSMUSG00000062995.13	ENSMUST00000038403.12	2075	14	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	7.8401183423021	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTCACTCCTGTTTGGT	-6	True	NA	-1	True	AATAAA	-35	NA	8778484	8630526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_8630798_8643972_8644243_8653496_8653536_8653629_8653693_8656361_8656409_8658219_8658315_8670693_8670793_8672297_8672424_8737016_8737216_8742254_8742379_8749694_8749768_8754588_8754752_8758365_8758459_8778071
transcript_46379.known	chr6	-	452	5	FSM	ENSMUSG00000029632.8	ENSMUST00000204714.2	452	5	0	0	0	0	multi-exon	FALSE	canonical	3	1509	junction_4	3332.42722163591	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGATGCGTGTCACTATTTA	NA	False	NA	-15	True	AATAAA	-11	NA	11907496	11900374	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_11900591_11905200_11905262_11906018_11906108_11907322_11907384_11907471
transcript_4638.known	chr10	+	2233	15	FSM	ENSMUSG00000032763.12	ENSMUST00000218885.2	2233	15	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_8	19.815990244945	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCCAAGGACTCAGTCACA	5893	False	NA	7	True	AATAAA	-16	NA	78410827	78420313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78418848_78418964_78419053_78419224_78419297_78419369_78419463_78419536_78419711_78419818_78419903
transcript_46382.known	chr6	-	409	4	FSM	ENSMUSG00000029632.8	ENSMUST00000204084.3	409	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	4235.12888430407	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGTGTCACTATTTAATGC	59	False	NA	-11	True	AATAAA	-15	NA	11907392	11900370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_11900591_11905200_11905262_11906018_11906077_11907322
transcript_46383.known	chr6	-	610	4	FSM	ENSMUSG00000029632.8	ENSMUST00000204978.3	610	4	0	0	0	0	multi-exon	FALSE	canonical	3	8511	junction_2	453.262494465281	2195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCTTGAATTTCTCTTA	-31	True	NA	69	True	ACTAAA	-17	NA	11907482	11900290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_11900591_11905200_11905262_11906018_11906108_11907322
transcript_46384.known	chr6	-	468	4	FSM	ENSMUSG00000029632.8	ENSMUST00000031637.8	468	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4249.68315158776	1640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCGTGTCACTATTTAATG	2	True	NA	-12	True	AATAAA	-14	NA	11907449	11900371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_11900591_11905200_11905262_11906018_11906080_11907322
transcript_46386.known	chr6	+	3336	18	FSM	ENSMUSG00000029629.18	ENSMUST00000115511.9	3336	18	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	28.335117658721	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAAATTCATATTTTTTT	9	True	NA	12	True	AATAAA	-23	NA	11925914	12081204	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_11926292_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983_12007106_12047825_12047944_12080995
transcript_46387.known	chr6	+	3353	17	FSM	ENSMUSG00000029629.18	ENSMUST00000115510.8	3353	17	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_16	37.0717210282986	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTGTATTGTATGATTTA	-26	True	NA	NA	False	AATAAA	-17	NA	11925879	12008012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_11926292_11926725_11926837_11933251_11934019_11941428_11941574_11953286_11953447_11961548_11961661_11962650_11962789_11986340_11986488_11987002_11987274_11987574_11987682_11988720_11988817_11990027_11990132_11991984_11992117_11997024_11997194_12006809_12006861_12006983_12007106_12007703
transcript_46389.known	chr6	+	478	3	FSM	ENSMUSG00000029629.18	ENSMUST00000155037.4	478	3	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_1	44	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAGACAAACAGTTAATTAA	35	False	NA	NA	False	AGTAAA	-41	NA	11907807	11933409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_11908017_11926725_11926837_11933251
transcript_46391.known	chr6	+	6002	9	FSM	ENSMUSG00000029571.15	ENSMUST00000031556.14	6002	9	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	9.57127865021179	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGGTCATCCTCTTGAAA	25	True	NA	18	True	AATAAA	-19	NA	13069837	13089268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_13069960_13070306_13070414_13071740_13071963_13075034_13075099_13078090_13078251_13081538_13081680_13082411_13082462_13083367_13083422_13084186
transcript_46394.known	chr6	-	4587	5	FSM	ENSMUSG00000029569.10	ENSMUST00000031554.9	4587	5	0	0	0	0	multi-exon	TRUE	canonical	3	155	junction_4	32.9194091684526	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGTGTCTCAGACTCAG	NA	False	NA	NA	False	AATAAA	-26	NA	13608099	13580685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_13583334_13591268_13591544_13594942_13595086_13602236_13603487_13607828
transcript_46395.known	chr6	-	3337	4	FSM	ENSMUSG00000029569.10	ENSMUST00000149123.3	3337	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	103.721850264167	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTGTGTCTCAGACTCAG	NA	False	NA	NA	False	AATAAA	-26	NA	13608099	13580685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_13583334_13591268_13591544_13594942_13595086_13607828
transcript_46396.known	chr6	-	326	2	FSM	ENSMUSG00000029569.10	ENSMUST00000138637.2	326	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGTGAATTAAGTGAAGGTT	4	True	NA	NA	False	AAGAAA	-3	NA	13608026	13607286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_13607415_13607828
transcript_46397.known	chr6	-	3177	3	FSM	ENSMUSG00000052419.8	ENSMUST00000139231.2	3177	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_2	22	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATTTTTTATTTCTGCCC	815	False	NA	NA	False	AATAAA	-19	NA	13871517	13867733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_13870740_13871054_13871146_13871437
transcript_464.known	chr1	-	683	3	FSM	ENSMUSG00000026154.5	ENSMUST00000027338.4	683	3	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_1	0.5	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTATTATTTTATTTTTA	NA	False	NA	-1	True	AATAAA	-23	NA	24044737	24035019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_24035442_24042237_24042388_24044626
transcript_46400.known	chr6	-	1606	1	FSM	ENSMUSG00000052419.8	ENSMUST00000185219.2	1606	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTATCTTCTCCTTGTGAG	1	True	NA	NA	False	AATAGA	-32	NA	13871464	13869858	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_13869900_13871500
transcript_46401.known	chr6	-	1077	3	FSM	ENSMUSG00000052419.8	ENSMUST00000155856.2	1077	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	53.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTATTGTTTTGGTCTGCT	0	True	NA	NA	False	AATACA	-22	NA	13871465	13869798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_13870740_13871054_13871163_13871437
transcript_46402.known	chr6	+	1499	3	FSM	ENSMUSG00000097616.8	ENSMUST00000181225.2	1499	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	3.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACTGTTATGGATGATAG	28	False	NA	NA	False	AATAAA	-22	NA	13871567	13896421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_13871627_13881271_13881381_13895090
transcript_46404.known	chr6	+	403	3	FSM	ENSMUSG00000097616.8	ENSMUST00000181090.8	403	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	8	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAACATTTCCTACTATAA	-15	True	NA	NA	False	NA	NA	NA	13871524	14044384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_13871627_13881271_13881381_14044192
transcript_46406.known	chr6	+	2440	7	FSM	ENSMUSG00000029552.20	ENSMUST00000115467.11	2440	7	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	5.93717104351896	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATTGTCTTTCTATGTC	-34	True	NA	NA	False	AATAAA	-15	NA	17065147	17105822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_17065313_17086135_17086222_17096126_17096380_17097259_17097590_17099702_17099919_17100280_17100440_17104591
transcript_46411.known	chr6	+	1046	10	FSM	ENSMUSG00000015733.14	ENSMUST00000130606.8	1046	10	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_6	571.076371619613	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGTTCCATTTCCTTTG	19	True	NA	NA	False	NA	NA	NA	17637108	17665587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660727_17660827_17662096_17662169_17665049_17665113_17665293
transcript_46415.known	chr6	+	2537	10	FSM	ENSMUSG00000015733.14	ENSMUST00000015877.14	2537	10	0	0	0	0	multi-exon	FALSE	canonical	3	1705	junction_7	87.4846018197234	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTAAGTTGTGTGAATT	1217	False	NA	NA	False	AGTAAA	-19	NA	17636981	17666971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_17637160_17648518_17648583_17650001_17650054_17654104_17654169_17656236_17656444_17657171_17657252_17660747_17660827_17662096_17662169_17665049_17665113_17665293
transcript_46429.known	chr6	-	1736	13	FSM	ENSMUSG00000010796.12	ENSMUST00000010940.11	1736	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	5.42307313450798	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACTGTGCTCATTTGTC	-6	True	NA	NA	False	AATAAA	-24	NA	18109056	18050962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_18051403_18054526_18054641_18055433_18055540_18071963_18072074_18073760_18073818_18074824_18074901_18075759_18075885_18076503_18076639_18077151_18077264_18103498_18103611_18104774_18104898_18108401_18108502_18108930
transcript_46432.known	chr6	+	503	5	FSM	ENSMUSG00000044155.12	ENSMUST00000201141.3	503	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	492.905353490911	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGATGTTTAGGGTTTTTA	18	True	NA	NA	False	NA	NA	NA	18848666	18853746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_18848763_18849624_18849666_18850909_18851001_18851634_18851763_18853599
transcript_46433.known	chr6	+	807	4	FSM	ENSMUSG00000044155.12	ENSMUST00000056398.11	807	4	0	0	0	0	multi-exon	FALSE	canonical	3	968	junction_1	14.522013940528	835	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGTTTTCTTTTCTTTCCT	1	True	NA	17	True	AATAAA	-17	NA	18848577	18854052	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_18848763_18849624_18849666_18851634_18851763_18853599
transcript_46436.known	chr6	+	3800	12	FSM	ENSMUSG00000029670.13	ENSMUST00000031680.10	3800	12	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	20.5043837280255	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAAGCTGAGTGTTCGAT	NA	False	NA	NA	False	NA	NA	NA	21949569	21976037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_21949793_21950036_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
transcript_4644.known	chr10	+	1606	10	FSM	ENSMUSG00000032763.12	ENSMUST00000218271.2	1606	10	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_9	51.1079709180283	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACACATGGTAGTGTATATT	5922	False	NA	NA	False	AATAAA	-15	NA	78410856	78417593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_78411066_78412415_78412618_78412733_78412862_78412944_78413084_78413175_78413288_78414854_78414955_78415296_78415395_78415499_78415637_78416889_78417025_78417247
transcript_46441.nic	chr6	+	1492	11	ISM	ENSMUSG00000029670.13	ENSMUST00000031680.10	3800	12	417	2135	-32	177	3prime_fragment	FALSE	canonical	3	141	junction_5	14.2562267097574	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTGCTATGAATATTATT	328	False	NA	NA	False	AGTAAA	-17	NA	21949986	21973902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
transcript_46442.nic	chr6	+	2119	11	ISM	ENSMUSG00000029670.13	ENSMUST00000031680.10	3800	12	417	1508	-32	0	3prime_fragment	FALSE	canonical	3	141	junction_5	14.2562267097574	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAACTTGTATTTAT	328	False	NA	8	True	AATAAA	-8	NA	21949986	21974529	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
transcript_46443.nic	chr6	+	2492	11	ISM	ENSMUSG00000029670.13	ENSMUST00000031680.10	3800	12	417	1135	-32	0	3prime_fragment	FALSE	canonical	3	141	junction_5	14.2562267097574	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCGTGATGTGGCAGTTA	328	False	NA	22	True	AATATA	-21	NA	21949986	21974902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625_21967698_21968883_21969004_21969276_21969435_21969912_21970107_21971105_21971308_21971809_21971849_21973581
transcript_46446.known	chr6	+	399	5	FSM	ENSMUSG00000029670.13	ENSMUST00000149728.7	399	5	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_4	5.58457697592217	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACGCTCATTCACATACTCCC	-7	True	NA	NA	False	NA	NA	NA	21950018	21967670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_21950109_21952127_21952229_21953761_21953828_21965732_21965830_21967625
transcript_46447.known	chr6	-	2826	10	FSM	ENSMUSG00000029672.17	ENSMUST00000165576.8	2826	10	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_3	15.4416464292006	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGTAGTAGTTGCAGTGAT	18	False	22356183	0	True	ATTAAA	-22	NA	22356165	22306518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_22308538_22309325_22309453_22318932_22319018_22321327_22321379_22322288_22322348_22328553_22328678_22329577_22329608_22339271_22339377_22343264_22343319_22355993
transcript_46448.known	chr6	-	1617	11	FSM	ENSMUSG00000029672.17	ENSMUST00000163963.8	1617	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	168.873325306278	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCAGATTTGTGAAAAGCA	24	True	NA	-21	True	AATAAA	-21	NA	22356097	22307880	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_22308538_22309325_22309453_22318932_22319018_22321327_22321379_22322288_22322348_22328553_22328678_22329577_22329608_22339271_22339377_22343264_22343319_22355012_22355234_22355993
transcript_46449.known	chr6	-	3701	24	FSM	ENSMUSG00000029695.14	ENSMUST00000031707.14	3701	24	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	3.81024387829681	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAGAAAAGAAAAAAA	1	True	NA	NA	False	NA	NA	NA	23132985	23072171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_23073090_23074526_23074704_23075160_23075250_23075739_23075856_23077077_23077174_23078826_23078995_23091197_23091339_23092263_23092373_23092462_23092574_23093894_23094022_23094188_23094311_23096824_23096893_23097141_23097202_23107138_23107251_23107615_23107739_23109425_23109575_23113424_23113553_23113674_23113754_23114839_23114987_23115086_23115155_23118668_23118754_23120875_23121053_23122511_23122737_23132879
transcript_46450.nnic	chr6	-	1434	7	NNC	ENSMUSG00000029695.14	novel	3701	24	NA	NA	42348	-330	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_6	2.92498812913071	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTCTCTTGAGTTTTTG	NA	False	NA	NA	False	AGTAAA	-17	NA	23085231	23072501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_23073090_23074526_23074704_23075160_23075250_23075739_23075856_23077077_23077174_23078826_23078995_23085031
transcript_46453.known	chr6	-	453	5	FSM	ENSMUSG00000023089.13	ENSMUST00000141274.2	453	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	1535.46725380257	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAAATGTGTCCATGTTATT	504	False	NA	-32	True	ATTAAA	-26	NA	24527525	24518665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_24518824_24519190_24519257_24522657_24522775_24527271_24527317_24527458
transcript_46454.known	chr6	-	875	5	FSM	ENSMUSG00000023089.13	ENSMUST00000023851.9	875	5	0	0	0	0	multi-exon	FALSE	canonical	3	2597	junction_4	429.359042643799	1492	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTCCATGTTATTG	17	False	NA	-31	True	ATTAAA	-27	NA	24528012	24518664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_24518824_24519190_24519257_24522657_24522775_24527271_24527317_24527524
transcript_46455.known	chr6	-	315	4	FSM	ENSMUSG00000023089.13	ENSMUST00000118558.5	315	4	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_2	1436.47492920072	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTGTCCATGTTATTG	-4	True	NA	-31	True	ATTAAA	-27	NA	24527569	24518664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_24518824_24519190_24519257_24527271_24527317_24527524
transcript_46456.known	chr6	-	4352	11	FSM	ENSMUSG00000029684.15	ENSMUST00000031695.15	4352	11	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_7	20.1893536300695	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGTGTCTCATTTGTTAT	-9	True	NA	NA	False	AATAAA	-27	NA	24665008	24613803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_24616346_24618271_24618381_24619183_24619702_24624234_24624389_24625052_24625096_24626692_24626862_24629923_24629948_24633835_24633933_24634570_24634658_24637647_24637783_24664534
transcript_46459.nic	chr6	-	927	6	ISM	ENSMUSG00000029684.15	ENSMUST00000031695.15	4352	11	-12	12960	-12	-102	5prime_fragment	FALSE	canonical	3	160	junction_2	27.1484806204694	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAGAAGAAAGGAAAAGC	-21	True	NA	NA	False	AATAGA	-40	NA	24665020	24626763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_24626862_24629923_24629948_24633835_24633933_24634570_24634658_24637647_24637783_24664534
transcript_46460.known	chr6	-	3151	18	FSM	ENSMUSG00000029676.16	ENSMUST00000115330.8	3151	18	0	0	0	0	multi-exon	TRUE	canonical	3	94	junction_8	16.939542404853	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAACATCTTCCAGATACTT	0	True	NA	NA	False	AATATA	-22	NA	25809225	25743735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25798007_25798055_25800282_25800510_25805873_25805941_25809173
transcript_46461.nic	chr6	-	2924	17	NIC	ENSMUSG00000029676.16	novel	3151	18	NA	NA	-8	-208	combination_of_known_junctions	FALSE	canonical	3	22	junction_14	31.693847983481	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATTTTTGTGTCTGTGTGT	-3	True	NA	-6	True	AATAAA	-14	NA	25809253	25743943	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_25744693_25745889_25745996_25748289_25748382_25750048_25750138_25752358_25752495_25753147_25753354_25756161_25756319_25757223_25757287_25758816_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25800282_25800510_25805873_25805941_25809173
transcript_46463.known	chr6	-	2447	10	FSM	ENSMUSG00000029676.16	ENSMUST00000115327.8	2447	10	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	7.93025150224688	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAATTACCACCAACA	4	True	NA	NA	False	AAAACA	-21	NA	25809194	25757683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_25758903_25764250_25764424_25771517_25771674_25775523_25775815_25778837_25778969_25794558_25794674_25798007_25798055_25800282_25800510_25805873_25805941_25809173
transcript_46465.known	chr6	-	703	5	FSM	ENSMUSG00000039841.15	ENSMUST00000155494.2	703	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	12.1937483982572	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTACACCTGAACAAACTGA	-6	True	NA	NA	False	AATATA	-42	NA	28261931	28244483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_28244663_28247139_28247284_28256429_28256526_28260716_28260836_28261766
transcript_46466.known	chr6	+	1116	6	FSM	ENSMUSG00000020440.14	ENSMUST00000020717.12	1116	6	0	0	0	0	multi-exon	TRUE	canonical	3	1725	junction_4	143.712769091685	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGGTGTTGTCTGTTGCCT	-31	True	NA	17	True	AATAAA	-17	NA	28423558	28426601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_28423755_28424288_28424370_28424720_28424831_28425171_28425244_28425737_28425864_28426070
transcript_46467.known	chr6	-	4650	2	FSM	ENSMUSG00000029708.10	ENSMUST00000090511.4	4650	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTAACTCTTGTTTTTAT	-13	True	NA	NA	False	AATAAA	-16	NA	28421723	28416089	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_28419300_28420283
transcript_46468.known	chr6	+	3482	24	FSM	ENSMUSG00000001424.15	ENSMUST00000001460.14	3482	24	0	0	0	0	multi-exon	FALSE	canonical	3	582	junction_3	55.1049865830108	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTGGAGCCAGAACACTG	-7	True	NA	30	True	AATAAA	-31	NA	28480346	28888831	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_28480642_28512833_28512984_28520143_28520265_28523725_28523805_28526051_28526213_28526907_28527000_28527575_28527735_28528911_28529019_28531407_28531499_28545483_28545598_28626098_28626189_28668556_28668658_28707032_28707144_28724907_28724981_28745183_28745326_28795827_28795938_28874859_28875049_28880195_28880338_28883256_28883381_28884186_28884257_28884954_28885069_28886412_28886617_28888077_28888123_28888233
transcript_46469.known	chr6	-	4465	19	FSM	ENSMUSG00000029701.16	ENSMUST00000007993.16	4465	19	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_12	24.6131175505167	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAACTTGCTTCTTGGTCATG	0	True	NA	-4	True	NA	NA	NA	29165005	29123574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_29125524_29127796_29127900_29128427_29128685_29131265_29131341_29131625_29131776_29135406_29135566_29137577_29137643_29138501_29138638_29139551_29139626_29143552_29143663_29152280_29152354_29154752_29154893_29155025_29155189_29157066_29157139_29158168_29158262_29158845_29158922_29159654_29159750_29160035_29160195_29164489
transcript_4647.known	chr10	-	1654	6	FSM	ENSMUSG00000052151.13	ENSMUST00000063879.13	1654	6	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_5	6.89927532426414	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCATGTTGATTTTTCAA	NA	False	NA	0	True	TATAAA	-22	NA	79369630	79362263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366863_79369457
transcript_46472.nnic	chr6	-	1237	6	NNC	ENSMUSG00000029701.16	novel	1923	12	NA	NA	-892	124	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	97.6565409995664	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACCTTTTTAACATTTTT	NA	False	NA	-19	True	AATATA	-29	NA	29132193	29125016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_29125524_29127796_29127900_29128427_29128685_29131265_29131341_29131625_29131776_29132048
transcript_46475.known	chr6	-	2600	15	FSM	ENSMUSG00000003500.14	ENSMUST00000159124.8	2600	15	0	0	0	0	multi-exon	FALSE	canonical	1	64	junction_14	59.8544152123146	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGATCCTGTTTCTGT	NA	False	NA	-1	True	AATAAA	-19	NA	29216363	29200435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067_29212167_29216070
transcript_46476.known	chr6	-	2580	15	FSM	ENSMUSG00000003500.14	ENSMUST00000162099.8	2580	15	0	0	0	0	multi-exon	FALSE	canonical	1	42	junction_14	63.7043554080817	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTGATCCTGTTTCTG	7	False	NA	-2	True	AATAAA	-18	NA	29216341	29200436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067_29212170_29216070
transcript_46477.known	chr6	-	2437	14	FSM	ENSMUSG00000003500.14	ENSMUST00000078155.12	2437	14	0	0	0	0	multi-exon	FALSE	canonical	1	70	junction_10	46.9877234375763	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTGATCCTGTTTCTGT	8	True	NA	-1	True	AATAAA	-19	NA	29212296	29200435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29212067
transcript_46478.known	chr6	-	2471	14	FSM	ENSMUSG00000003500.14	ENSMUST00000162739.8	2471	14	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_13	73.8672245580225	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATCCTGTTTCTGTCCT	-12	True	NA	2	True	AATAAA	-22	NA	29216330	29200432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206304_29206512_29206921_29206997_29207093_29207196_29209218_29209268_29216070
transcript_46479.nnic	chr6	-	2214	13	NIC	ENSMUSG00000003500.14	novel	2580	15	NA	NA	15	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	66.8698466342558	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTGTGATCCTGTTTCTG	-16	True	NA	-2	True	AATAAA	-18	NA	29212281	29200436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_29201219_29202445_29202530_29202664_29202809_29203100_29203246_29203347_29203492_29204277_29204374_29204567_29204659_29205049_29205250_29206064_29206153_29206921_29206997_29207093_29207196_29209218_29209268_29212067
transcript_4648.known	chr10	-	1609	6	FSM	ENSMUSG00000052151.13	ENSMUST00000163602.9	1609	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_5	21.5462293684997	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCATGTTGATTTTTCAA	NA	False	NA	0	True	TATAAA	-22	NA	79369626	79362263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79366710_79366863_79369498
transcript_46480.known	chr6	+	982	2	FSM	ENSMUSG00000043421.9	ENSMUST00000054445.9	982	2	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	0	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTGTCCTGTTGACATG	1	True	NA	14	True	AATAAA	-21	NA	29272624	29275445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_29272810_29274648
transcript_46482.known	chr6	+	3229	7	FSM	ENSMUSG00000029767.17	ENSMUST00000031779.17	3229	7	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_2	154.523730647863	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATGTGTCTTTTATTCTC	NA	False	NA	118	True	AATAAA	-22	NA	29348104	29376674	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_29348208_29356469_29356697_29361292_29361487_29366038_29366206_29366915_29366977_29372469_29372670_29374397
transcript_46483.known	chr6	+	2670	7	FSM	ENSMUSG00000029767.17	ENSMUST00000090481.14	2670	7	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_2	301.970979105977	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTCACCTTAGCCATTGCA	-1	True	NA	NA	False	NA	NA	NA	29348117	29376128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_29348208_29356469_29356697_29361558_29361753_29366038_29366206_29366915_29366977_29372469_29372670_29374397
transcript_46485.known	chr6	+	703	2	FSM	ENSMUSG00000004285.13	ENSMUST00000004396.13	703	2	0	0	0	0	multi-exon	FALSE	canonical	3	1924	junction_1	0	1229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTGGTATGGATACG	NA	False	NA	37	True	ATTAAA	-19	NA	29467716	29470511	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_29467974_29470065
transcript_46486.known	chr6	+	546	2	FSM	ENSMUSG00000004285.13	ENSMUST00000143101.4	546	2	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTACTGGTATGGATACG	275	False	NA	37	True	ATTAAA	-19	NA	29468066	29470511	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_29468167_29470065
transcript_46487.known	chr6	-	3590	24	FSM	ENSMUSG00000012535.15	ENSMUST00000170350.8	3590	24	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_23	180.197874854504	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTTTAAAAAGGAAAGCTGA	31	False	NA	NA	False	AAAAAG	-9	NA	29609810	29541569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29599538_29599698_29609364
transcript_46489.known	chr6	-	4251	23	FSM	ENSMUSG00000012535.15	ENSMUST00000012679.15	4251	23	0	0	0	0	multi-exon	FALSE	canonical	3	521	junction_17	54.5301683125804	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	NA	False	NA	-2	True	TTTAAA	-5	NA	29609886	29540825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554962_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
transcript_46490.known	chr6	-	3989	23	FSM	ENSMUSG00000012535.15	ENSMUST00000115251.8	3989	23	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	140.778774050425	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCAGTGTTTTTATTTCCC	235	False	NA	-2	True	TTTAAA	-5	NA	29609606	29540825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_29541866_29543261_29543360_29551850_29551964_29554793_29554980_29555151_29555309_29556976_29557072_29558750_29558868_29560080_29560222_29561358_29561420_29562856_29562934_29565169_29565262_29565662_29565855_29568852_29568993_29571034_29571127_29572584_29572693_29575004_29575152_29578461_29578601_29579519_29579696_29582164_29582309_29586036_29586194_29588021_29588096_29589027_29589229_29609364
transcript_46496.known	chr6	+	1003	2	FSM	ENSMUSG00000045709.12	ENSMUST00000141679.3	1003	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGCTTAGCAGTCTTT	NA	False	NA	NA	False	AATAAA	-17	NA	29985233	29993777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_29985466_29993006
transcript_46499.nic	chr6	+	2383	13	NIC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	163.040383545509	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTGTCTCTGTGTAAT	NA	False	NA	NA	False	NA	NA	NA	30047970	30140903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
transcript_465.nnic	chr1	-	687	3	NNC	ENSMUSG00000026154.5	novel	683	3	NA	NA	0	-6	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_1	156	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTAGATTTATTATTTTA	NA	False	NA	-7	True	AATAAA	-17	NA	24044737	24035025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_24035442_24042227_24042388_24044626
transcript_4650.nic	chr10	-	1478	5	NIC	ENSMUSG00000052151.13	novel	1566	6	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_4	25.791229129299	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGCCATGCATGTTGATTT	NA	False	NA	-5	True	TATAAA	-17	NA	79369611	79362268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_79363083_79363283_79363461_79363648_79363707_79366331_79366607_79369457
transcript_46500.nic	chr6	+	1969	13	NIC	ENSMUSG00000058440.15	novel	1879	12	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	175.389309030574	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATATGTATGGTTTGGGC	NA	False	NA	2	True	AATAAA	-18	NA	30047970	30144854	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
transcript_46503.nic	chr6	+	2380	13	NIC	ENSMUSG00000058440.15	novel	3584	12	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	167.068411636272	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTGTCTCTGTGTAAT	NA	False	NA	NA	False	NA	NA	NA	30047970	30140903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
transcript_46504.nic	chr6	+	1966	13	NIC	ENSMUSG00000058440.15	novel	1879	12	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_4	178.740889433715	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATATGTATGGTTTGGGC	NA	False	NA	2	True	AATAAA	-18	NA	30047970	30144854	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30090267_30090304_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
transcript_46506.nic	chr6	+	2347	12	NIC	ENSMUSG00000058440.15	novel	3295	12	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	271	junction_11	90.9985923058862	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTGTCTCTGTGTAAT	NA	False	NA	NA	False	NA	NA	NA	30047970	30140903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
transcript_46507.known	chr6	+	1879	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115206.8	1879	12	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_11	119.561388499108	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTATGGTTTGGGCTTTGG	15	True	NA	7	True	AATAAA	-23	NA	30048029	30144859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
transcript_46508.known	chr6	+	3295	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115211.8	3295	12	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_11	122.448774919714	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGTATGTTCTTTTCT	-14	True	NA	69	True	TATAAA	-12	NA	30048000	30153179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_30048113_30088831_30088988_30089910_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
transcript_46509.nic	chr6	+	2344	12	NIC	ENSMUSG00000058440.15	novel	3584	12	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	218	junction_2	102.024061333144	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAGTTGTCTCTGTGTAAT	NA	False	NA	NA	False	NA	NA	NA	30047970	30140903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30140214
transcript_46510.nic	chr6	+	1930	12	NIC	ENSMUSG00000058440.15	novel	1879	12	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	122	junction_11	127.487870108467	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATATGTATGGTTTGGGC	NA	False	NA	2	True	AATAAA	-18	NA	30047970	30144854	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_30048113_30088831_30088988_30089913_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30144579
transcript_46512.known	chr6	+	3584	12	FSM	ENSMUSG00000058440.15	ENSMUST00000115212.8	3584	12	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_11	130.142642658033	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAGTGCCCCTCTCTCTA	-28	True	NA	NA	False	AATAAA	-18	NA	30047986	30153457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_30048113_30088831_30088988_30089913_30090146_30095338_30095454_30098447_30098575_30102167_30102309_30115011_30115171_30116094_30116293_30117054_30117157_30118947_30119106_30126233_30126359_30151512
transcript_46515.known	chr6	-	1824	10	FSM	ENSMUSG00000039130.19	ENSMUST00000080812.14	1824	10	0	0	0	0	multi-exon	FALSE	canonical	1	382	junction_8	221.210865270177	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTGCTAGAGAATTGTTTT	-9	True	NA	-7	True	AATAAA	-18	NA	30391022	30366378	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_30366745_30370263_30370471_30372736_30372950_30373241_30373483_30374763_30374919_30375937_30376066_30381779_30381864_30382535_30382687_30387419_30387532_30390855
transcript_46518.known	chr6	-	2908	2	FSM	ENSMUSG00000039130.19	ENSMUST00000152101.2	2908	2	0	0	0	0	multi-exon	FALSE	canonical	3	1089	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AGAAAAAAAAAAAAAAAAAA	4	True	NA	NA	False	NA	NA	NA	30391009	30384777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_30387532_30390855
transcript_46520.known	chr6	-	3485	15	FSM	ENSMUSG00000029782.21	ENSMUST00000115160.10	3485	15	0	0	0	0	multi-exon	FALSE	canonical	3	776	junction_14	62.8738614129878	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTGGTGAAATCATTTGAA	NA	False	NA	-9	True	AATAAA	-19	NA	30509782	30481226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508802_30509683
transcript_46524.known	chr6	-	2273	15	FSM	ENSMUSG00000029782.21	ENSMUST00000115157.8	2273	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_14	253.514963532123	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGCATCTTGAAAGGTCAA	2	True	NA	-18	True	ATTAAA	-16	NA	30509717	30482413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_30482985_30487373_30487448_30489291_30489390_30489474_30489590_30491085_30491184_30492595_30492722_30494736_30494834_30497165_30497238_30497816_30497993_30501899_30502102_30505731_30505974_30506784_30506917_30508452_30508512_30508664_30508842_30509683
transcript_4654.known	chr10	+	944	4	FSM	ENSMUSG00000020310.10	ENSMUST00000217748.2	944	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	3.29983164553722	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGCCCAGAGCTAAATAAAA	3183	False	NA	NA	False	NA	NA	NA	79500420	79504339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79500502_79500745_79501013_79501264_79501592_79504070
transcript_46546.known	chr6	-	3522	12	FSM	ENSMUSG00000029790.17	ENSMUST00000140211.8	3522	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	34.0944240612173	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTGTCGTTTGCTATTAA	15	True	NA	-2	True	ATTAAA	-14	NA	30693692	30653457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_30655850_30656477_30656694_30657296_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30661721_30661855_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
transcript_46549.known	chr6	-	3447	11	FSM	ENSMUSG00000029790.17	ENSMUST00000031810.15	3447	11	0	0	0	0	multi-exon	TRUE	canonical	3	75	junction_8	9.18095855561934	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTCGTTTGCTATTAATG	NA	False	NA	0	True	ATTAAA	-16	NA	30693748	30653455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_30655850_30656477_30656694_30657296_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
transcript_4655.known	chr10	+	1101	2	FSM	ENSMUSG00000020308.8	ENSMUST00000239401.2	1101	2	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_1	0	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCCTTGCTGGTCACCT	8006	False	NA	10	True	AATAAA	-12	NA	79505243	79511960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79505618_79511233
transcript_46554.nnic	chr6	-	1205	11	NNC	ENSMUSG00000029790.17	novel	3447	11	NA	NA	0	-128	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	26.0624250598443	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACCCTCAGCGCTCCCAAC	NA	False	NA	-5	True	AATAAA	-17	NA	30693748	30655658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_30655850_30656477_30656694_30657335_30657412_30658355_30658424_30658771_30658924_30660868_30661014_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
transcript_46559.known	chr6	-	485	3	FSM	ENSMUSG00000029790.17	ENSMUST00000115130.3	485	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	51	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTTATTCCAGACATCTTA	8	True	NA	NA	False	NA	NA	NA	30693699	30679086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_30679444_30680129_30680194_30693635
transcript_4656.known	chr10	+	368	2	FSM	ENSMUSG00000020308.8	ENSMUST00000219585.2	368	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTCAGAACCGGCATGCT	8479	False	NA	NA	False	NA	NA	NA	79505716	79511432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79505886_79511233
transcript_46560.known	chr6	-	438	6	FSM	ENSMUSG00000029790.17	ENSMUST00000169422.8	438	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	37.4432904536981	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTCTAATGTCTTCTGCA	32	False	NA	NA	False	AATATA	-18	NA	30693675	30666026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_30666181_30666265_30666336_30667379_30667442_30671321_30671370_30680129_30680194_30693635
transcript_46563.known	chr6	-	3155	24	FSM	ENSMUSG00000025607.16	ENSMUST00000166192.7	3155	24	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	47.3145369461355	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTCAAAGTTGCTATACT	NA	False	NA	-14	True	AATAAA	-15	NA	30873729	30748410	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_30748987_30749404_30749501_30749759_30749899_30750536_30750635_30786493_30786666_30787265_30787406_30787859_30787923_30788527_30788654_30789678_30789783_30790645_30790722_30792865_30793110_30793677_30793774_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
transcript_46567.known	chr6	-	961	10	FSM	ENSMUSG00000025607.16	ENSMUST00000131256.8	961	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	71.4927260393896	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAGGATTCTAAGTAACACA	NA	False	NA	NA	False	AATAAA	-14	NA	30873665	30835361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_30835553_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
transcript_46568.nnic	chr6	-	607	5	NNC	ENSMUSG00000025607.16	novel	333	4	NA	NA	-12	1463	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	83.6282697417566	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAGAGTTTTAATAAAATT	NA	False	NA	NA	False	AATAAA	-28	NA	30873711	30870368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_30870543_30871781_30871863_30872476_30872530_30872993_30873177_30873595
transcript_46569.nnic	chr6	-	422	4	NNC	ENSMUSG00000025607.16	novel	333	4	NA	NA	-10	1463	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	102.009803450453	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAGAGTTTTAATAAAATT	NA	False	NA	NA	False	AATAAA	-28	NA	30873709	30870368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_30870543_30871781_30871863_30872476_30872530_30873595
transcript_4657.known	chr10	+	278	2	FSM	ENSMUSG00000020308.8	ENSMUST00000220175.2	278	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCGGCCGCAAGAAGAAACC	8509	False	NA	NA	False	NA	NA	NA	79505746	79511282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79505976_79511233
transcript_46570.known	chr6	-	1261	13	FSM	ENSMUSG00000025607.16	ENSMUST00000135230.8	1261	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	62.5954271492735	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGGTGTCTGACTTTAGT	NA	False	NA	NA	False	NA	NA	NA	30873699	30801127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_30801194_30801302_30801492_30802561_30802630_30803072_30803207_30835672_30835831_30836822_30836910_30838302_30838396_30840469_30840546_30862514_30862595_30867535_30867608_30871781_30871863_30872476_30872530_30873595
transcript_46571.known	chr6	+	2561	12	FSM	ENSMUSG00000051855.16	ENSMUST00000163949.9	2561	12	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_7	40.2939611577855	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGATTCCGGCTTCCCCTCC	-3	True	NA	13	True	AATAAA	-19	NA	30738048	30748461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_30738335_30740668_30740824_30742139_30742220_30742526_30742605_30742714_30742852_30743012_30743072_30744352_30744394_30744860_30744932_30745080_30745183_30745828_30745906_30746260_30746325_30747050
transcript_46573.known	chr6	+	750	7	FSM	ENSMUSG00000087380.8	ENSMUST00000151800.8	750	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTATCTTTATTTTGTGT	NA	False	NA	NA	False	NA	NA	NA	31197291	31314327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_31197455_31254782_31254891_31261937_31262056_31305223_31305296_31312925_31312998_31313738_31313793_31314164
transcript_46575.known	chr6	+	11395	18	FSM	ENSMUSG00000025609.16	ENSMUST00000026699.15	11395	18	0	0	0	0	multi-exon	FALSE	canonical	1	225	junction_9	99.990726213583	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTGTTTGCCAAAATTACTT	NA	False	NA	NA	False	AATAAA	-17	NA	31375669	31493746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_31375890_31395865_31395936_31403648_31403792_31405071_31405161_31408074_31408185_31409873_31410067_31426430_31426509_31428453_31428520_31435889_31436003_31445065_31445279_31451233_31451456_31454861_31454992_31466269_31466418_31467376_31467492_31469579_31469720_31473603_31473707_31476821_31476877_31484559
transcript_46581.known	chr6	-	1550	8	FSM	ENSMUSG00000053768.14	ENSMUST00000066379.11	1550	8	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_3	29.0320020470023	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTGACTAAGACTGGCC	NA	False	NA	-10	True	AATAAA	-25	NA	33037195	32769151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_32769862_32780824_32780961_32829079_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
transcript_46582.known	chr6	-	1363	6	FSM	ENSMUSG00000053768.14	ENSMUST00000115091.2	1363	6	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	31.2089730686545	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTAGAATTATTAGTTTCTG	NA	False	NA	-12	True	AATAAA	-16	NA	33037152	32828377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_32829151_32869226_32869311_32945135_32945254_32985417_32985500_33026271_33026360_33036934
transcript_46583.known	chr6	+	4824	18	FSM	ENSMUSG00000029763.18	ENSMUST00000052266.15	4824	18	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_11	15.4671210608191	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGTATGTTGTTTTTCTC	NA	False	NA	20	True	ATTAAA	-22	NA	33226019	33950914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_33226174_33242874_33243065_33254121_33254317_33273667_33273853_33282219_33282330_33309145_33309390_33324717_33324893_33415314_33415461_33418885_33418975_33556916_33557014_33734901_33735122_33792608_33792746_33815909_33816066_33838995_33839175_33887422_33887565_33895335_33895515_33898312_33898473_33948848
transcript_46586.known	chr6	+	1060	6	FSM	ENSMUSG00000029763.18	ENSMUST00000139132.2	1060	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	51.1640498787967	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTTTTTTTAATCTTTTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	33226070	33296331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_33226174_33242874_33243065_33254121_33254317_33273667_33273853_33282219_33282330_33296054
transcript_4659.nnic	chr10	+	790	6	NNC	ENSMUSG00000020307.16	novel	1266	5	NA	NA	8	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	763.990157004657	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGACCCGTGTGGGCCTC	NA	False	NA	28	True	AATAAA	-19	NA	79518036	79523930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_79518068_79518233_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682
transcript_46591.known	chr6	-	6253	10	FSM	ENSMUSG00000018999.15	ENSMUST00000019143.9	6253	10	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_2	11.5223882983853	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTGTCCAATCACCATTG	NA	False	NA	NA	False	AATAAA	-18	NA	34154046	34130314	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_34135562_34136367_34136444_34137407_34137484_34138610_34138721_34140263_34140325_34140523_34140606_34143308_34143359_34144559_34144663_34147395_34147510_34153712
transcript_46596.known	chr6	-	1387	10	FSM	ENSMUSG00000001642.19	ENSMUST00000102980.11	1387	10	0	0	0	0	multi-exon	FALSE	canonical	3	629	junction_4	199.673498924718	1700	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTGGTGGTCCGTTTTG	NA	False	NA	-5	True	AATAAA	-16	NA	34294413	34280868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_34281275_34283474_34283558_34285913_34285998_34286510_34286593_34286895_34287003_34287447_34287571_34287859_34287938_34288856_34288974_34289574_34289743_34294274
transcript_46597.known	chr6	+	1358	10	FSM	ENSMUSG00000029762.7	ENSMUST00000038406.7	1358	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	1.94999208608714	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGAAGTGATTTTTGAG	NA	False	NA	NA	False	AATAAA	-32	NA	34331053	34345398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_34331232_34333190_34333359_34334395_34334513_34335065_34335144_34340266_34340390_34340656_34340764_34341171_34341254_34342141_34342226_34342837_34342921_34345060
transcript_46598.known	chr6	+	1371	10	FSM	ENSMUSG00000061758.14	ENSMUST00000038383.14	1371	10	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_8	4.10960933531265	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTTTCAACTGTCAGAAT	3006	False	NA	4	True	AATAAA	-18	NA	34361152	34373885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_34361343_34364606_34364775_34365710_34365828_34366989_34367068_34368951_34369075_34369323_34369431_34369849_34369932_34370992_34371077_34371661_34371745_34373546
transcript_46599.known	chr6	+	1280	10	FSM	ENSMUSG00000061758.14	ENSMUST00000139156.8	1280	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	7.01497516340649	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGACATTTTCAACTGTCAG	3069	False	NA	1	True	AATAAA	-15	NA	34361215	34373882	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_34361343_34364606_34364775_34365710_34365828_34367014_34367068_34368951_34369075_34369323_34369431_34369849_34369932_34370992_34371077_34371661_34371745_34373546
transcript_466.known	chr1	-	345	1	FSM	ENSMUSG00000101939.2	ENSMUST00000188299.2	345	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	50	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATGGTAATTAGTTTAAA	NA	False	NA	NA	False	AAAAAG	-18	NA	24652200	24651855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_24651900_24652200
transcript_4660.nnic	chr10	+	1092	6	NNC	ENSMUSG00000020307.16	novel	1266	5	NA	NA	8	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	763.990157004657	148	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAGAGAATCACCTAGGA	NA	False	NA	21	True	AATAAA	-21	NA	79518036	79524232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_79518068_79518233_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682
transcript_46601.known	chr6	+	1131	3	FSM	ENSMUSG00000061758.14	ENSMUST00000144384.3	1131	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAGAAATTGAAGGGA	3037	False	NA	NA	False	NA	NA	NA	34361183	34366514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_34361343_34364606_34364775_34365710
transcript_46602.known	chr6	+	1281	10	FSM	ENSMUSG00000052131.8	ENSMUST00000007449.9	1281	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.666666666666667	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTAGTATGCTGTCCATT	4986	False	NA	NA	False	AATAAA	-19	NA	34389268	34400077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_34389411_34392254_34392423_34393052_34393170_34394217_34394296_34395928_34396052_34396342_34396450_34396853_34396936_34397380_34397465_34397997_34398081_34399780
transcript_46603.known	chr6	+	2220	3	FSM	ENSMUSG00000038871.6	ENSMUST00000045372.6	2220	3	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	7.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGTTCTAAATCATTGCTG	NA	False	NA	NA	False	AATAAA	-19	NA	34453141	34482548	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_34453358_34464224_34464886_34481205
transcript_46606.known	chr6	+	1861	2	FSM	ENSMUSG00000038871.6	ENSMUST00000135743.2	1861	2	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATCATTGACAGACTATAAT	NA	False	NA	NA	False	ATTAAA	-14	NA	34453290	34466018	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_34453358_34464224
transcript_46609.known	chr6	+	4041	12	FSM	ENSMUSG00000029761.17	ENSMUST00000115021.8	4041	12	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	28.0630930241598	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTCGTGCATTCTTTG	1257	False	NA	32	True	AATAAA	-20	NA	34686376	34752408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_34686633_34718723_34718871_34722553_34722951_34730377_34730524_34732568_34732834_34734918_34735060_34739044_34739089_34739185_34739265_34741890_34742029_34743037_34743134_34747982_34748064_34750157
transcript_4661.nnic	chr10	+	813	6	NNC	ENSMUSG00000020307.16	novel	1266	5	NA	NA	12	-21	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	763.990157004657	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGACCCGTGTGGGCCTC	NA	False	NA	28	True	AATAAA	-19	NA	79518040	79523930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_79518097_79518235_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682
transcript_46612.nic	chr6	+	1133	5	ISM	ENSMUSG00000029761.17	ENSMUST00000115021.8	4041	12	-13	19666	-13	0	5prime_fragment	FALSE	canonical	3	149	junction_3	28.5252081499855	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAAAAGAGGGAAGAGA	1244	False	NA	9	True	NA	NA	NA	34686363	34732742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_34686633_34718723_34718871_34722553_34722951_34730377_34730524_34732568
transcript_46614.nic	chr6	+	749	3	ISM	ENSMUSG00000029761.17	ENSMUST00000031775.13	2142	13	-205	27743	-13	3743	5prime_fragment	FALSE	canonical	3	208	junction_2	9	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAGAAGAAAAGGAAGAGG	1244	False	NA	NA	False	NA	NA	NA	34686363	34722886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_34686633_34718723_34718871_34722553
transcript_46615.nic	chr6	+	1711	3	ISM	ENSMUSG00000029761.17	ENSMUST00000031775.13	2142	13	-205	26781	-13	4705	5prime_fragment	FALSE	canonical	3	208	junction_2	9	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGATGCTGAATGTGGTG	1244	False	NA	NA	False	ATTAAA	-21	NA	34686363	34723848	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_34686633_34718723_34718871_34722553
transcript_46616.known	chr6	+	1264	1	FSM	ENSMUSG00000029761.17	ENSMUST00000201024.2	1264	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAACCTTT	1305	False	NA	NA	False	NA	NA	NA	34686424	34687688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_34686400_34687700
transcript_46617.known	chr6	-	1501	4	FSM	ENSMUSG00000046806.14	ENSMUST00000115006.2	1501	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	8.9566858950296	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTTGTGACGACTATTC	7648	False	NA	-20	True	NA	NA	NA	34854944	34850629	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_34851631_34852390_34852548_34853473_34853707_34854834
transcript_46618.known	chr6	-	3326	4	FSM	ENSMUSG00000046806.14	ENSMUST00000115007.9	3326	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	4.92160768674447	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACCACCATAGTAAAACCACT	7597	False	NA	NA	False	ATTAAA	-16	NA	34854995	34848774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_34851631_34852471_34852548_34853473_34853707_34854834
transcript_4662.nnic	chr10	+	1115	6	NNC	ENSMUSG00000020307.16	novel	1266	5	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	763.990157004657	129	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAGAGAATCACCTAGGA	NA	False	NA	21	True	AATAAA	-21	NA	79518040	79524232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_79518097_79518235_79518425_79520651_79520739_79520838_79520937_79521066_79521202_79523682
transcript_46621.known	chr6	-	2682	15	FSM	ENSMUSG00000058486.12	ENSMUST00000081214.12	2682	15	0	0	0	0	multi-exon	FALSE	canonical	2	55	junction_12	11.4653426304081	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGTGTCTCTTTCTGGAC	5776	False	NA	-1	True	NA	NA	NA	34887811	34857360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_34857904_34861118_34861317_34863000_34863114_34863742_34863852_34865888_34866058_34866171_34866267_34868321_34868473_34869275_34869470_34873115_34873275_34881451_34881618_34882419_34882554_34883575_34883659_34885048_34885257_34886295_34886476_34887631
transcript_46623.known	chr6	-	2287	1	FSM	ENSMUSG00000058486.12	ENSMUST00000201569.2	2287	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAACCAAAAAAC	5819	False	NA	NA	False	NA	NA	NA	34887768	34885481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_34885500_34887800
transcript_46624.nic	chr6	+	1465	9	NIC	ENSMUSG00000029848.12	novel	1803	10	NA	NA	-71	0	combination_of_known_junctions	FALSE	canonical	1	6	junction_2	25.8202924073295	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGGTGTCCTGGCAGT	NA	False	NA	13	True	TATAAA	-18	NA	34897823	34916279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_34897990_34904653_34904789_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
transcript_46625.known	chr6	+	1455	9	FSM	ENSMUSG00000029848.12	ENSMUST00000114999.8	1455	9	0	0	0	0	multi-exon	FALSE	canonical	1	14	junction_3	19.2272592950738	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTTGGTGTCCTGGCA	NA	False	NA	11	True	TATAAA	-16	NA	34897894	34916277	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_34897990_34904653_34904852_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
transcript_46626.known	chr6	+	1207	8	FSM	ENSMUSG00000029848.12	ENSMUST00000114997.3	1207	8	0	0	0	0	multi-exon	FALSE	canonical	1	14	junction_2	25.1931315550691	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTTTGGTGTCCTGGCA	NA	False	NA	11	True	TATAAA	-16	NA	34897944	34916277	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_34897990_34907295_34907372_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
transcript_46627.nnic	chr6	+	1253	7	NIC	ENSMUSG00000029848.12	novel	1803	10	NA	NA	-70	0	combination_of_known_splicesites	FALSE	canonical	2	8	junction_1	23.8607068908977	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTGGTGTCCTGGCAGT	NA	False	NA	13	True	TATAAA	-18	NA	34897824	34916279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_34897990_34907817_34907903_34909932_34910221_34911014_34911301_34912517_34912592_34914967_34915080_34916036
transcript_46628.known	chr6	-	3296	11	FSM	ENSMUSG00000038784.14	ENSMUST00000202417.2	3296	11	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	41.7378724901018	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAGAAATCTTAACAATA	7646	False	NA	NA	False	AAAAAG	-28	NA	35110659	35021930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_35023294_35027996_35028495_35029776_35030027_35033145_35033204_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
transcript_4663.known	chr10	-	107	1	FSM	ENSMUSG00000065220.3	ENSMUST00000083286.3	107	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	4908	False	NA	NA	False	NA	NA	NA	79539424	79539317	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_79539300_79539400
transcript_46634.nic	chr6	-	591	3	ISM	ENSMUSG00000038784.14	ENSMUST00000202417.2	3296	11	-21	33102	-21	-25198	5prime_fragment	FALSE	canonical	3	141	junction_1	39.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAATGAAAGAAAACAGAA	7625	False	NA	NA	False	NA	NA	NA	35110680	35055032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_35055114_35056895_35057162_35110436
transcript_46635.known	chr6	-	3473	12	FSM	ENSMUSG00000038784.14	ENSMUST00000114993.9	3473	12	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_2	43.8453329687493	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGACCCTCGGGTGAGTC	7681	False	NA	-8	True	AATAAA	-14	NA	35110624	34999005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_35000368_35001062_35001276_35027996_35028495_35029776_35030027_35033145_35033204_35041832_35041958_35045522_35045649_35046304_35046407_35047151_35047239_35054915_35055114_35056895_35057162_35110436
transcript_46636.known	chr6	+	2409	15	FSM	ENSMUSG00000038759.16	ENSMUST00000202898.2	2409	15	0	0	0	0	multi-exon	FALSE	canonical	2	193	junction_5	41.0390555645796	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTTATTCCTTCTTGG	NA	False	NA	NA	False	AATAAA	-15	NA	35154550	35182588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_35154595_35160783_35160927_35163367_35163540_35165558_35165704_35166030_35166191_35166789_35167019_35168808_35168974_35171339_35171516_35173368_35173486_35173653_35173792_35175770_35175922_35176788_35176995_35178920_35179104_35180897_35180949_35182259
transcript_46641.known	chr6	+	2521	3	FSM	ENSMUSG00000073155.13	ENSMUST00000152147.8	2521	3	0	0	0	0	multi-exon	FALSE	canonical	3	978	junction_2	33.5	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTCTGCCACACTACTT	NA	False	NA	15	True	NA	NA	NA	35229588	35240431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_35229718_35237344_35237399_35238093
transcript_46643.known	chr6	-	3960	4	FSM	ENSMUSG00000029840.9	ENSMUST00000031866.9	3960	4	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_3	9.97775303139718	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGCTGCTCATAGAAAAG	4148	False	NA	NA	False	ATTAAA	-15	NA	35516823	35485840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_35489253_35498834_35498919_35499616_35499731_35516473
transcript_46651.known	chr6	-	7082	12	FSM	ENSMUSG00000038648.6	ENSMUST00000041093.6	7082	12	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	9.34552529156102	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCCTGGTCTTTAAATC	NA	False	NA	0	True	AATAAA	-18	NA	37419081	37304189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_37309436_37311297_37311518_37312762_37312890_37313149_37313250_37330491_37330561_37331685_37331745_37332577_37332725_37335397_37335583_37339292_37339381_37340902_37341079_37356746_37356964_37418633
transcript_46653.nnic	chr6	-	2622	11	NNC	ENSMUSG00000038648.6	novel	7082	12	NA	NA	-40985	3170	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_10	25.5556256037687	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTTCCTCTTTCATACAA	7987	False	NA	NA	False	ATTAAA	-25	NA	37354455	37308056	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_37309436_37311297_37311518_37312762_37312890_37313149_37313250_37330491_37330561_37331685_37331745_37332577_37332725_37335397_37335583_37339292_37339381_37340902_37341079_37354383
transcript_46654.known	chr6	+	3940	19	FSM	ENSMUSG00000029833.18	ENSMUST00000120428.8	3940	19	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_9	66.0549014078441	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTGGTTATTGTTTTGTT	NA	False	NA	NA	False	ATTAAA	-21	NA	37847745	37943231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_37848410_37880467_37880587_37885151_37885300_37892099_37892233_37896308_37896426_37904460_37904576_37908288_37908436_37920347_37920466_37922455_37922623_37926156_37926334_37928386_37928561_37930428_37930565_37933337_37933411_37933938_37934108_37934443_37934773_37935496_37935630_37937715_37937791_37941637_37941788_37942435
transcript_46656.known	chr6	-	3052	9	FSM	ENSMUSG00000029826.15	ENSMUST00000114898.3	3052	9	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_5	27.0081006366608	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGCAGTTGGATTTTTTT	9664	False	NA	-3	True	NA	NA	NA	38331538	38292602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_38293359_38296638_38296760_38302126_38302302_38306083_38306208_38308697_38308797_38309424_38310124_38313346_38313600_38317154_38317291_38330849
transcript_46657.known	chr6	+	348	1	FSM	ENSMUSG00000057696.5	ENSMUST00000119767.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	33	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAAGTTTTCCTTTAA	1214	False	NA	NA	False	NA	NA	NA	38353741	38354089	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_38353700_38354100
transcript_46658.known	chr6	+	479	2	FSM	ENSMUSG00000019689.5	ENSMUST00000019833.5	479	2	0	0	0	0	multi-exon	FALSE	canonical	3	741	junction_1	0	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTTGGTTTTTGTGTGCT	9929	False	NA	9	True	ATTAAA	-17	NA	38511757	38516384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_38511946_38516093
transcript_4666.known	chr10	+	921	8	FSM	ENSMUSG00000023175.16	ENSMUST00000178383.8	921	8	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_5	2288.21761131556	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGAAGTGTTGTCACTAC	NA	False	NA	80	True	NA	NA	NA	79540403	79547657	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546559_79546673_79546755_79547089_79547115_79547327
transcript_46662.nic	chr6	-	2978	17	NIC	ENSMUSG00000029924.13	novel	2878	16	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_14	89.544681584112	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCTGCTTAAGCTTGACA	NA	False	NA	-7	True	AATAAA	-26	NA	39354629	39312918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39349012_39349072_39349780_39349862_39354552
transcript_46667.known	chr6	-	4030	15	FSM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	0	0	0	0	multi-exon	TRUE	canonical	3	160	junction_14	38.6108925098626	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACATTTTGCCCTTAAGTG	NA	False	NA	-8	True	AATAAA	-16	NA	39354609	39311706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
transcript_46672.known	chr6	-	2669	14	FSM	ENSMUSG00000029924.13	ENSMUST00000201448.4	2669	14	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_9	72.7375113825747	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCCTGCTTAAGCTTGACA	NA	False	NA	-7	True	AATAAA	-26	NA	39354606	39312918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_39314219_39315682_39315749_39321186_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
transcript_46674.nic	chr6	-	2118	13	ISM	ENSMUSG00000029924.13	ENSMUST00000090243.8	4030	15	-32	8846	-32	291	5prime_fragment	FALSE	canonical	3	160	junction_12	41.2501683498248	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTGACTGTATAATTAAA	NA	False	NA	1	True	AATAAA	-19	NA	39354641	39320552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_39321339_39322228_39322277_39322828_39322931_39324222_39324365_39326273_39326453_39326983_39327069_39329587_39329685_39331910_39332057_39334333_39334418_39336883_39336977_39341436_39341546_39343822_39343981_39354552
transcript_46679.known	chr6	-	3046	8	FSM	ENSMUSG00000029922.16	ENSMUST00000031985.13	3046	8	0	0	0	0	multi-exon	FALSE	canonical	3	1453	junction_3	1193.53149458715	254	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTCTTGTGTGATGACCT	NA	False	NA	4	True	AATAAA	-24	NA	39397396	39374737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_39376369_39376731_39376871_39377328_39377440_39378143_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
transcript_46692.known	chr6	-	1485	5	FSM	ENSMUSG00000029922.16	ENSMUST00000122996.8	1485	5	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_4	1508.75983841034	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGTGAAATGTCTTCT	NA	False	NA	1	True	AATAAA	-22	NA	39397001	39377687	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39396773
transcript_46693.known	chr6	-	1511	5	FSM	ENSMUSG00000029922.16	ENSMUST00000051671.11	1511	5	0	0	0	0	multi-exon	FALSE	canonical	3	1568	junction_2	1258.9473777724	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGGAGTCTGTGTGAAATG	NA	False	NA	-5	True	AATAAA	-16	NA	39397292	39377693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_39378359_39381581_39381809_39382664_39382895_39387021_39387151_39397032
transcript_46696.nic	chr6	-	808	3	ISM	ENSMUSG00000029922.16	ENSMUST00000122996.8	1485	5	-29	4785	-29	0	5prime_fragment	FALSE	canonical	3	157	junction_2	2093.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCCGAATGCTGTCCC	NA	False	NA	0	True	AATAAA	-25	NA	39397030	39382472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_39382895_39387021_39387151_39396773
transcript_46698.known	chr6	-	751	3	FSM	ENSMUSG00000029922.16	ENSMUST00000114822.2	751	3	0	0	0	0	multi-exon	FALSE	canonical	3	4055	junction_2	144.5	534	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTCCGAATGCTGTCCC	NA	False	NA	0	True	AATAAA	-25	NA	39397232	39382472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_39382895_39387021_39387151_39397032
transcript_46699.known	chr6	-	1702	11	FSM	ENSMUSG00000038456.10	ENSMUST00000149162.2	1702	11	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_9	12.8953479984062	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATATTAAAAGAGAAGAAGAA	NA	False	NA	-23	True	TTTAAA	-7	NA	39466100	39440186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_39440386_39441145_39441233_39441984_39442225_39442517_39442636_39445706_39445749_39447132_39447311_39457134_39457284_39459946_39460088_39462492_39462571_39464753_39464824_39465700
transcript_467.known	chr1	-	783	1	FSM	ENSMUSG00000101111.2	ENSMUST00000190277.2	783	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	75	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTCCCTTAGTATAATTAA	NA	False	NA	NA	False	NA	NA	NA	24653052	24652269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_24652300_24653100
transcript_46704.known	chr6	+	3542	8	FSM	ENSMUSG00000046947.13	ENSMUST00000140364.8	3542	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	10.7437689582647	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACATCCCCTTTTGTGACT	NA	False	NA	NA	False	AATAAA	-24	NA	39550806	39565703	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_39552141_39553296_39553444_39556596_39556726_39557929_39558026_39560744_39560997_39562660_39562790_39563774_39563829_39564302
transcript_46712.known	chr6	+	4371	4	FSM	ENSMUSG00000002416.14	ENSMUST00000135671.8	4371	4	0	0	0	0	multi-exon	FALSE	canonical	3	748	junction_3	834.773555456142	621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCAGCTATCTTTTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	39569507	39580316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_39569647_39573384_39573530_39575199_39575296_39576325
transcript_46713.known	chr6	+	455	4	FSM	ENSMUSG00000002416.14	ENSMUST00000119379.2	455	4	0	0	0	0	multi-exon	FALSE	canonical	3	713	junction_3	851.269770532363	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTATGTTTCTGATGACAA	NA	False	NA	30	True	ATTAAA	-39	NA	39569516	39576405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_39569647_39573384_39573530_39575199_39575300_39576325
transcript_46716.known	chr6	+	491	4	FSM	ENSMUSG00000002416.14	ENSMUST00000002490.7	491	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	1056.98470502967	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTCATTAAAGGTGTAAAT	NA	False	NA	-19	True	AAGAAA	-7	NA	39569518	39576356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_39569738_39573384_39573530_39575199_39575296_39576325
transcript_46725.known	chr6	-	1107	3	FSM	ENSMUSG00000029918.10	ENSMUST00000031978.9	1107	3	0	0	0	0	multi-exon	FALSE	canonical	3	1131	junction_2	267.5	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTACTTTTTGAGACAGTGGA	NA	False	NA	NA	False	AATAAA	-19	NA	39787922	39778737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_39779479_39782304_39782546_39787797
transcript_46726.known	chr6	-	500	3	FSM	ENSMUSG00000029918.10	ENSMUST00000114797.2	500	3	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	481	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATGTGTTTAAGATTGGAA	NA	False	NA	-18	True	AATAAA	-12	NA	39787819	39779125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_39779479_39782420_39782546_39787797
transcript_46730.nnic	chr6	+	2305	17	NIC	ENSMUSG00000029916.12	novel	2531	16	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_5	181.494049058778	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGTGTAATCTAAATGCA	NA	False	NA	8	True	NA	NA	NA	40302411	40373696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40331947_40332028_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
transcript_46735.known	chr6	+	2531	16	FSM	ENSMUSG00000029916.12	ENSMUST00000031977.12	2531	16	0	0	0	0	multi-exon	FALSE	canonical	3	517	junction_15	44.4424221762146	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGTGTAATCTAAATGCA	NA	False	NA	8	True	NA	NA	NA	40302105	40373696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40333978_40334055_40341208_40341302_40343674_40343708_40345514_40345610_40353155_40353226_40358137_40358218_40360693_40360752_40363747_40363896_40364377_40364476_40369586_40369658_40371547_40371633_40372658
transcript_46740.known	chr6	+	1281	1	FSM	ENSMUSG00000029916.12	ENSMUST00000201329.2	1281	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAAAAAAAAATCTCAAG	NA	False	NA	NA	False	NA	NA	NA	40302420	40303701	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_40302400_40303700
transcript_46741.known	chr6	+	785	8	FSM	ENSMUSG00000029916.12	ENSMUST00000201342.4	785	8	0	0	0	0	multi-exon	FALSE	canonical	3	547	junction_1	45.5313303211791	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGGTGCTTTCTGTCAT	NA	False	NA	NA	False	AATACA	-19	NA	40302418	40345824	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_40302465_40306426_40306534_40324345_40324386_40329286_40329367_40333978_40334055_40341208_40341302_40343674_40343708_40345514
transcript_46743.known	chr6	+	4398	7	FSM	ENSMUSG00000029911.15	ENSMUST00000114779.9	4398	7	0	0	0	0	multi-exon	FALSE	canonical	3	1713	junction_1	435.133695929577	880	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAGGTATTTTAAATAAGGC	NA	False	NA	NA	False	AATAAA	-15	NA	40448285	40461634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_40448394_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
transcript_46746.known	chr6	+	933	7	FSM	ENSMUSG00000029911.15	ENSMUST00000117411.8	933	7	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	935.620961358462	377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAGTGGTTATATTTTT	NA	False	NA	NA	False	ATTAAA	-12	NA	40448408	40457926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_40448760_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
transcript_46747.nnic	chr6	+	819	7	NNC	ENSMUSG00000029911.15	novel	933	7	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1038.11106502789	138	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTATATTTTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	40448373	40457929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_40448608_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
transcript_4675.known	chr10	+	1261	7	FSM	ENSMUSG00000023175.16	ENSMUST00000179781.8	1261	7	0	0	0	0	multi-exon	FALSE	canonical	3	6175	junction_5	429.072416835304	4877	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGTGTCACTACTTGAA	NA	False	NA	21	True	AATAAA	-15	NA	79540324	79547803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79540419_79545504_79545662_79545891_79545975_79546093_79546237_79546471_79546755_79547089_79547115_79547327
transcript_46751.known	chr6	+	1063	6	FSM	ENSMUSG00000029911.15	ENSMUST00000031971.13	1063	6	0	0	0	0	multi-exon	FALSE	canonical	3	1713	junction_1	476.592320542411	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGACATGTTTTATTATTT	NA	False	NA	NA	False	NA	NA	NA	40448348	40455521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_40448394_40449004_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856
transcript_46753.known	chr6	+	1188	6	FSM	ENSMUSG00000029911.15	ENSMUST00000121360.8	1188	6	0	0	0	0	multi-exon	FALSE	canonical	3	2472	junction_3	238.868666844356	568	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGGTTATATTTTTCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	40448401	40457929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_40449068_40451598_40451660_40453300_40453442_40453681_40453770_40454856_40454946_40457786
transcript_46755.known	chr6	+	3762	18	FSM	ENSMUSG00000029869.8	ENSMUST00000114732.3	3762	18	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_2	4.47522978861417	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGTGTGTCCATGCCTCAG	328	False	NA	13	True	ATTAAA	-25	NA	41582415	41597443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_41582755_41589577_41589650_41590148_41590353_41590685_41590751_41591012_41591776_41592422_41592579_41592850_41593202_41593393_41593519_41593681_41593845_41594197_41594313_41594560_41594614_41594780_41594901_41595001_41595250_41595504_41595679_41596164_41596315_41596540_41596735_41596856_41597013_41597129
transcript_46757.known	chr6	+	930	8	FSM	ENSMUSG00000029864.8	ENSMUST00000031897.8	930	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	4.42165358301205	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAAGCATTTCTGGGTC	NA	False	NA	2	True	AATAAA	-13	NA	42222868	42227375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_42223028_42223483_42223566_42223744_42223874_42224417_42224519_42224667_42224704_42226312_42226430_42226772_42226867_42227163
transcript_46760.known	chr6	+	1147	3	FSM	ENSMUSG00000071506.5	ENSMUST00000095987.4	1147	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCAGTGCCTCCTGTTTTC	NA	False	NA	NA	False	AGTAAA	-31	NA	42238903	42241489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_42238961_42240177_42240440_42240661
transcript_46761.known	chr6	+	2605	10	FSM	ENSMUSG00000029860.17	ENSMUST00000203652.3	2605	10	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	4.64545443563708	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCACAGTCCCCTTCACTT	NA	False	NA	NA	False	ATTAAA	-17	NA	42326761	42335496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_42327054_42327190_42327411_42327879_42328083_42328203_42328297_42328408_42328904_42332850_42332972_42333095_42333266_42333365_42333545_42334246_42334368_42334785
transcript_46764.known	chr6	-	453	3	FSM	ENSMUSG00000036667.15	ENSMUST00000153952.2	453	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAGAATAAAATGAATGCT	6089	False	NA	NA	False	TTTAAA	-4	NA	42687006	42686030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_42686261_42686462_42686572_42686892
transcript_46767.known	chr6	-	2671	9	FSM	ENSMUSG00000029735.18	ENSMUST00000067888.14	2671	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	3.903123748999	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATAGCAATGCTGTGGTATT	NA	False	NA	-6	True	ATTAAA	-19	NA	43643212	43321934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_43323835_43400554_43400667_43445935_43446083_43465808_43465905_43500817_43500891_43536876_43536947_43588247_43588320_43642693_43642752_43643069
transcript_46779.known	chr6	+	6279	4	FSM	ENSMUSG00000039419.18	ENSMUST00000199100.5	6279	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	8.01387685344754	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAATTCTTTGTGTTTTATA	NA	False	NA	NA	False	AATAAA	-31	NA	47221320	47281143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_47221484_47248073_47248314_47273652_47273734_47275348
transcript_46783.nic	chr6	+	3267	22	NIC	ENSMUSG00000029686.16	novel	2385	20	NA	NA	188	1	intron_retention	FALSE	canonical	3	204	junction_1	97.2284170361992	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTACAAGTTGCATTT	NA	False	NA	9	True	AATAAA	-14	NA	47430613	47502993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_47430964_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
transcript_46784.nic	chr6	+	3192	22	NIC	ENSMUSG00000029686.16	novel	2385	20	NA	NA	-69	0	intron_retention	FALSE	canonical	3	204	junction_1	97.2284170361992	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTATATTCCCATTGTCTT	NA	False	NA	19	True	AATAAA	-20	NA	47430768	47503073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_47430964_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
transcript_46785.known	chr6	+	3161	22	FSM	ENSMUSG00000029686.16	ENSMUST00000031697.9	3161	22	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_1	65.0983905600956	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTATATTCCCATTGTCTT	NA	False	NA	19	True	AATAAA	-20	NA	47431253	47503073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_47431418_47461677_47461979_47472000_47472176_47474154_47474323_47478101_47478153_47478632_47478724_47479360_47479525_47485159_47485323_47485906_47486038_47491728_47491837_47491912_47492020_47493408_47493458_47494035_47494168_47495098_47495217_47496069_47496147_47496581_47496714_47497726_47497820_47500011_47500060_47500137_47500221_47500632_47500739_47501450_47501565_47502487
transcript_46791.known	chr6	-	2775	20	FSM	ENSMUSG00000029687.17	ENSMUST00000114618.8	2775	20	0	0	0	0	multi-exon	TRUE	canonical	3	48	junction_12	268.321921839443	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTGTTAGTATTGCATG	NA	False	NA	NA	False	AATAAA	-26	NA	47571964	47507072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528650_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553496_47553599_47554477_47554602_47571827
transcript_46792.known	chr6	-	2787	20	FSM	ENSMUSG00000029687.17	ENSMUST00000081721.13	2787	20	0	0	0	0	multi-exon	FALSE	canonical	3	406	junction_7	166.792654135859	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTGTTAGTATTGCATG	NA	False	NA	NA	False	AATAAA	-26	NA	47571964	47507072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
transcript_46795.nic	chr6	-	2528	20	NIC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	52	0	combination_of_known_junctions	FALSE	canonical	3	225	junction_17	211.360085807553	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTTTTCAAATTTGAATA	NA	False	NA	-58	True	NA	NA	NA	47571912	47507252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47518778_47518905_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553496_47553599_47554477_47554602_47571827
transcript_46799.nic	chr6	-	2489	19	NIC	ENSMUSG00000029687.17	novel	2787	20	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	443	junction_6	133.55213528621	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATTTTTCAAATTTGAATA	NA	False	NA	-58	True	NA	NA	NA	47571972	47507252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_47507536_47508674_47508760_47508918_47509000_47509835_47509918_47510675_47510772_47517610_47517790_47519299_47519341_47520879_47520975_47521373_47521544_47522609_47522851_47524278_47524371_47528665_47528830_47529319_47529423_47531057_47531199_47532963_47533085_47535111_47535229_47553469_47553599_47554477_47554602_47571827
transcript_468.known	chr1	-	678	1	FSM	ENSMUSG00000100862.2	ENSMUST00000189941.2	678	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	83	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGACCCACCAAACTCAT	NA	False	NA	NA	False	AATACA	-1	NA	24653732	24653054	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_24653100_24653700
transcript_46806.known	chr6	-	112	1	FSM	ENSMUSG00000065701.3	ENSMUST00000083767.3	112	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGAAACTTACATCTCCCCA	NA	False	NA	-2	True	NA	NA	NA	47765114	47765002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_47765000_47765100
transcript_46808.known	chr6	-	2399	10	FSM	ENSMUSG00000025823.10	ENSMUST00000077290.9	2399	10	0	0	0	0	multi-exon	FALSE	canonical	3	1547	junction_7	244.688060423022	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGTTTGCCTTTTATTTT	8890	False	NA	23	True	TTTAAA	-24	NA	47790364	47773074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_47773838_47775298_47775533_47776119_47776277_47777871_47778024_47780364_47780524_47780638_47780845_47783439_47783579_47783939_47784146_47785108_47785278_47790150
transcript_46811.known	chr6	-	3191	4	FSM	ENSMUSG00000051499.8	ENSMUST00000058844.6	3191	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	4.64279609239471	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATATGCGTTTGGGTTTGC	5720	False	NA	-7	True	AATACA	-20	NA	47807801	47796199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_47798636_47801974_47802131_47803895_47804023_47807329
transcript_46813.known	chr6	+	2906	6	FSM	ENSMUSG00000062519.14	ENSMUST00000079881.11	2906	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	4.17612260356422	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACAACAGGGATCATCACAT	NA	False	NA	NA	False	NA	NA	NA	47812597	47844622	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_47812855_47817185_47817582_47835862_47835990_47836352_47836467_47840037_47840152_47842724
transcript_46814.known	chr6	+	5573	8	FSM	ENSMUSG00000025821.10	ENSMUST00000061890.8	5573	8	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_5	6.34388666033558	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCCCTTAACTTTTGG	NA	False	NA	NA	False	NA	NA	NA	47854137	47885419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_47854771_47856933_47857354_47866999_47867127_47867537_47867658_47869788_47869909_47874748_47874863_47875827_47875942_47881494
transcript_46815.known	chr6	+	2801	5	FSM	ENSMUSG00000052763.8	ENSMUST00000009411.9	2801	5	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_4	25.1445819213603	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCACAGGGTGTTTTCTG	NA	False	NA	24	True	AATAAA	-31	NA	47897409	47909573	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_47897684_47903440_47903831_47903953_47904081_47905983_47906065_47907644
transcript_46816.known	chr6	+	2761	5	FSM	ENSMUSG00000045466.19	ENSMUST00000101445.11	2761	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	2.77263412660235	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCCCTGTCTTGCCTTGACC	9713	False	NA	18	True	AATAAA	-23	NA	47930323	47942234	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_47930517_47932750_47933105_47934409_47934537_47939458_47939567_47940255
transcript_46819.known	chr6	-	599	5	FSM	ENSMUSG00000068551.13	ENSMUST00000101443.10	599	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.17944947177034	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTAGACCGAATGTCCTTT	NA	False	NA	3	True	NA	NA	NA	48422398	48404630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_48404814_48418880_48418995_48419558_48419673_48420345_48420422_48422286
transcript_46820.known	chr6	+	333	1	FSM	ENSMUSG00000095526.3	ENSMUST00000117571.2	333	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	173	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACTAATGGAGAGTAAATAAA	NA	False	NA	NA	False	NA	NA	NA	48500451	48500784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_48500500_48500800
transcript_46821.known	chr6	+	1789	4	FSM	ENSMUSG00000039347.8	ENSMUST00000040361.8	1789	4	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	1.24721912892465	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGCCTCTGCTCAGTT	6204	False	NA	27	True	AATAAA	-35	NA	48514548	48518735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_48514789_48516157_48516206_48516973_48517101_48517361
transcript_46822.known	chr6	+	2674	2	FSM	ENSMUSG00000073096.12	ENSMUST00000101436.3	2674	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGGTCTTGGTCATGGTA	8288	False	NA	13	True	NA	NA	NA	48531738	48547655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_48531828_48545070
transcript_46823.known	chr6	+	3057	3	FSM	ENSMUSG00000052751.17	ENSMUST00000135151.3	3057	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	9.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTGGCTGGTGGTGTTCTTT	NA	False	NA	20	True	AATAAA	-18	NA	48570833	48576015	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_48570987_48571795_48571911_48573226
transcript_46825.known	chr6	+	3138	3	FSM	ENSMUSG00000052751.17	ENSMUST00000118229.2	3138	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGGCTGGTGGTGTTCTTTT	NA	False	NA	21	True	AATAAA	-19	NA	48570824	48576016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_48570987_48571724_48571911_48573226
transcript_46826.known	chr6	+	4143	3	FSM	ENSMUSG00000007216.7	ENSMUST00000204095.3	4143	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	4.5	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATGGCTTTCAGCG	NA	False	NA	NA	False	NA	NA	NA	48578996	48600161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_48579055_48590111_48590194_48596158
transcript_46827.known	chr6	+	1384	2	FSM	ENSMUSG00000051124.7	ENSMUST00000054050.5	1384	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTATGATTGACTTCTTG	1289	False	NA	17	True	NA	NA	NA	48653062	48655633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_48653189_48654375
transcript_46829.known	chr6	+	1804	3	FSM	ENSMUSG00000054435.17	ENSMUST00000090070.6	1804	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTAGAGCTGGAATCTGT	2054	False	NA	NA	False	AATAAA	-21	NA	48661515	48668994	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_48661558_48663771_48663844_48667304
transcript_46830.known	chr6	+	1493	3	FSM	ENSMUSG00000090019.6	ENSMUST00000054368.7	1493	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGACTGGTGGTCGTGTCG	7624	False	NA	NA	False	NA	NA	NA	48715987	48720724	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_48716091_48718253_48718352_48719432
transcript_46831.known	chr6	+	1540	7	FSM	ENSMUSG00000023367.15	ENSMUST00000101426.11	1540	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.11476292340825	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGATTTGTATATTTTTAAAT	NA	False	NA	NA	False	TATAAA	-27	NA	48818445	48822803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_48818524_48819137_48819336_48819522_48819634_48820718_48820776_48820894_48821114_48821601_48821713_48822037
transcript_46832.known	chr6	-	1238	8	FSM	ENSMUSG00000029810.16	ENSMUST00000101429.11	1238	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.699854212223765	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATACCCTCTCACAGAAAG	NA	False	NA	NA	False	GATAAA	-19	NA	48818051	48810763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_48811074_48811440_48811561_48812378_48812610_48812839_48812897_48813160_48813272_48815105_48815300_48817294_48817388_48817929
transcript_46833.known	chr6	+	1086	7	FSM	ENSMUSG00000023367.15	ENSMUST00000168406.4	1086	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCCTTGCTTTGTCACACC	NA	False	NA	NA	False	AATAAA	-21	NA	48818516	48822299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_48818645_48819137_48819336_48819522_48819634_48820718_48820776_48820894_48821114_48821601_48821713_48822037
transcript_46834.known	chr6	+	3701	11	FSM	ENSMUSG00000029816.11	ENSMUST00000031840.10	3701	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_4	6.96347614342147	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCATCTCTGAGTAATTCA	NA	False	NA	NA	False	TATAAA	-13	NA	49013548	49035116	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_49013727_49019700_49019854_49020930_49021075_49022238_49022413_49024227_49024387_49024669_49025036_49027343_49027443_49027957_49028061_49028751_49028961_49032554_49032649_49033094
transcript_46836.known	chr6	-	4345	15	FSM	ENSMUSG00000029814.11	ENSMUST00000031838.9	4345	15	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_14	48.9016610043012	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACAGCTTCTGTAGTATGT	NA	False	NA	-24	True	AATAAA	-15	NA	49191891	49062156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082640_49084275_49084399_49085859_49085995_49094085_49094368_49111628_49111693_49111780_49111833_49145403_49145453_49190200_49190262_49191230
transcript_46845.nnic	chr6	-	1540	8	NNC	ENSMUSG00000029814.11	novel	4345	15	NA	NA	-126	1000	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_7	190.173926837986	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAAGTGGGGGTA	NA	False	NA	NA	False	AATATA	-31	NA	49191764	49064061	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_49064375_49064701_49064816_49065363_49065496_49067909_49067985_49071073_49071191_49081107_49081234_49082503_49082633_49191230
transcript_46846.known	chr6	-	711	4	FSM	ENSMUSG00000029814.11	ENSMUST00000203680.2	711	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	219.654273803175	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTCCT	NA	False	NA	-3	True	ATTAAA	-22	NA	49191638	49144846	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_49145040_49145403_49145453_49190200_49190262_49191230
transcript_46847.known	chr6	+	2819	4	FSM	ENSMUSG00000029815.13	ENSMUST00000128616.6	2819	4	0	0	0	0	multi-exon	FALSE	canonical	3	781	junction_1	29.2232783924049	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAATTTTGCTTTTAACT	295	False	NA	NA	False	TATAAA	-23	NA	49050728	49063685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_49051038_49052019_49052199_49059778_49059861_49061436
transcript_46848.known	chr6	+	2587	3	FSM	ENSMUSG00000029815.13	ENSMUST00000114500.3	2587	3	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	380.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATAATTTTGCTTTTAACT	348	False	NA	NA	False	TATAAA	-23	NA	49050781	49063685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_49051038_49059778_49059861_49061436
transcript_46849.nnic	chr6	-	2153	9	NNC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_7	180.182372889248	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4555	False	NA	-4	True	AATAAA	-15	NA	49241002	49220857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229730_49230043_49240771
transcript_46850.nnic	chr6	-	2142	9	NNC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_7	181.788983095786	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4555	False	NA	-4	True	AATAAA	-15	NA	49241002	49220857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229741_49230043_49240771
transcript_46852.known	chr6	-	1799	8	FSM	ENSMUSG00000029817.12	ENSMUST00000031841.9	1799	8	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_7	100.796420409392	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGGGATTGTCTCTTTA	4593	False	NA	-8	True	AATAAA	-11	NA	49240964	49220861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49240771
transcript_46853.nic	chr6	-	2434	8	NIC	ENSMUSG00000029817.12	novel	2090	9	NA	NA	-35	0	intron_retention	FALSE	canonical	3	123	junction_7	139.301024799547	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4555	False	NA	-4	True	AATAAA	-15	NA	49241002	49220857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49230043_49240771
transcript_46854.known	chr6	-	3788	1	FSM	ENSMUSG00000029817.12	ENSMUST00000204013.2	3788	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAAAAAAAAAATCCAG	4593	False	NA	NA	False	AATACA	-20	NA	49240964	49237176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_49237200_49241000
transcript_46855.known	chr6	-	2090	9	FSM	ENSMUSG00000029817.12	ENSMUST00000203820.3	2090	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	190.764866720788	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGATTGTCTCTTTATTTG	4612	False	NA	-4	True	AATAAA	-15	NA	49240945	49220857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_49221666_49221801_49221870_49222409_49222545_49223782_49223899_49225919_49226109_49227796_49227957_49229315_49229450_49229736_49230043_49240771
transcript_46856.known	chr6	+	2351	3	FSM	ENSMUSG00000050786.9	ENSMUST00000055559.8	2351	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	7.5	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGTTATTTTTGGTTTG	NA	False	NA	15	True	AATAAA	-19	NA	49296207	49318516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_49296415_49310844_49311232_49316759
transcript_46858.nnic	chr6	+	1331	7	NNC	ENSMUSG00000047115.16	novel	2730	7	NA	NA	39	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_4	13.9483173019385	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAATACATAGGGTCAG	NA	False	NA	NA	False	ATTAAA	-7	NA	49344711	49366207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355443_49359896_49360014_49362306_49362390_49365750
transcript_46859.known	chr6	+	2730	7	FSM	ENSMUSG00000047115.16	ENSMUST00000060561.15	2730	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	5.75663867972351	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACAATTTGGAATTGGTGT	NA	False	NA	NA	False	NA	NA	NA	49344672	49367473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355537_49359896_49360014_49362306_49362390_49365750
transcript_46860.known	chr6	+	1304	6	FSM	ENSMUSG00000047115.16	ENSMUST00000121903.2	1304	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	14.4360659460949	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATAGGGTCAGATTTTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	49344756	49366214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_49344908_49349501_49349676_49353037_49353229_49355329_49355537_49359896_49360014_49365750
transcript_46861.nnic	chr6	+	3195	24	NNC	ENSMUSG00000023403.15	novel	1251	10	NA	NA	-65	0	at_least_one_novel_splicesite	FALSE	canonical	2	90	junction_1	54.4319696453353	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	108	False	NA	NA	False	AATAAA	-22	NA	49372472	49446435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_46862.known	chr6	+	3237	24	FSM	ENSMUSG00000023403.15	ENSMUST00000024171.14	3237	24	0	0	0	0	multi-exon	FALSE	canonical	2	108	junction_8	52.5929548855327	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	173	False	NA	NA	False	AATAAA	-22	NA	49372537	49446435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_46863.nnic	chr6	+	3076	23	NNC	ENSMUSG00000023403.15	novel	1251	10	NA	NA	-69	0	at_least_one_novel_splicesite	FALSE	canonical	2	36	junction_21	66.1650827991485	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	104	False	NA	NA	False	AATAAA	-22	NA	49372468	49446435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49442402_49442472_49446061
transcript_46864.nnic	chr6	+	2823	23	NNC	ENSMUSG00000023403.15	novel	1251	10	NA	NA	-52	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_6	65.863824580947	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	121	False	NA	NA	False	AATAAA	-22	NA	49372485	49446435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49396088_49396264_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_46867.nnic	chr6	+	2769	22	NNC	ENSMUSG00000023403.15	novel	1251	10	NA	NA	-173	0	at_least_one_novel_splicesite	TRUE	canonical	2	62	junction_6	55.816430581886	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	0	True	NA	NA	False	AATAAA	-22	NA	49372364	49446435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_46869.nnic	chr6	+	2760	22	NIC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	-57	0	combination_of_known_splicesites	FALSE	canonical	2	62	junction_6	53.746739604748	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	116	False	NA	NA	False	AATAAA	-22	NA	49372480	49446435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49398617_49398734_49400309_49400470_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_4687.known	chr10	-	3755	21	FSM	ENSMUSG00000020329.13	ENSMUST00000020580.13	3755	21	0	0	0	0	multi-exon	TRUE	canonical	3	126	junction_16	17.3118456555042	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGAGACGCTGCGCTCGG	4709	False	NA	-7	True	NA	NA	NA	79582413	79571963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_79572118_79572200_79572278_79572356_79572449_79572567_79572641_79573097_79573197_79573290_79573344_79573433_79573548_79573633_79573721_79573864_79574045_79574161_79574285_79574515_79574639_79574976_79575766_79575977_79576200_79576412_79576584_79576666_79576832_79576960_79577111_79577541_79577729_79577821_79577953_79579011_79579563_79581507_79581607_79582298
transcript_46876.nnic	chr6	+	2385	20	NNC	ENSMUSG00000023403.15	novel	1251	10	NA	NA	-65	0	at_least_one_novel_splicesite	FALSE	canonical	2	62	junction_6	56.8725064900417	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	108	False	NA	NA	False	AATAAA	-22	NA	49372472	49446435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_46877.nnic	chr6	+	2484	20	NIC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	-57	0	combination_of_known_splicesites	FALSE	canonical	2	62	junction_6	54.5748107857386	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAATCATTCATATTCTTT	116	False	NA	NA	False	AATAAA	-22	NA	49372480	49446435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49402629_49402753_49414283_49414467_49414906_49415024_49415382_49415503_49416032_49416165_49417790_49417893_49419164_49419246_49422101_49422228_49423027_49423154_49423324_49423412_49424177_49424328_49434589_49434713_49442402_49442472_49446061
transcript_46880.nnic	chr6	+	1481	10	NNC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	-65	-45618	at_least_one_novel_splicesite	FALSE	canonical	2	90	junction_1	75.6161521709205	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGTTGTTTTTTACTTT	108	False	NA	NA	False	AATAAA	-18	NA	49372472	49400668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309
transcript_46881.nic	chr6	+	1580	10	ISM	ENSMUSG00000023403.15	ENSMUST00000163954.8	2988	23	-88	45618	-57	-45618	5prime_fragment	FALSE	canonical	2	108	junction_8	72.8109339231783	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGTTGTTTTTTACTTT	116	False	NA	NA	False	AATAAA	-18	NA	49372480	49400668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49394122_49394482_49396088_49396264_49398617_49398734_49400309
transcript_46882.nnic	chr6	+	945	8	NNC	ENSMUSG00000023403.15	novel	3237	24	NA	NA	-63	-45618	at_least_one_novel_splicesite	FALSE	canonical	2	62	junction_6	86.4121590083814	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGTTGTTTTTTACTTT	110	False	NA	NA	False	AATAAA	-18	NA	49372474	49400668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_49372512_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49398617_49398734_49400309
transcript_46883.nnic	chr6	+	1046	8	NIC	ENSMUSG00000023403.15	novel	2988	23	NA	NA	-57	-45618	combination_of_known_splicesites	FALSE	canonical	2	62	junction_6	82.8418705136725	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTGTTGTTTTTTACTTT	116	False	NA	NA	False	AATAAA	-18	NA	49372480	49400668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_49372619_49374994_49375042_49375129_49375183_49381699_49381799_49383683_49383759_49385986_49386146_49398617_49398734_49400309
transcript_46886.known	chr6	+	2161	13	FSM	ENSMUSG00000038388.15	ENSMUST00000036236.15	2161	13	0	0	0	0	multi-exon	FALSE	canonical	3	978	junction_6	79.6350617225576	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCGTTCAAGCATTTTGTAA	NA	False	NA	8	True	CATAAA	-5	NA	50087228	50175567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_50087445_50120698_50120765_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
transcript_4689.known	chr10	-	1639	9	FSM	ENSMUSG00000035890.10	ENSMUST00000047203.9	1639	9	0	0	0	0	multi-exon	FALSE	canonical	3	909	junction_4	92.4302946819927	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAGGGTGTCCATGACTG	NA	False	NA	20	True	AATACA	-43	NA	79602786	79594348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_79595071_79596624_79596741_79596822_79596917_79597263_79597334_79597398_79597468_79597918_79598164_79598315_79598380_79598480_79598540_79602586
transcript_46890.nnic	chr6	+	1994	13	NNC	ENSMUSG00000038388.15	novel	616	3	NA	NA	13658	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	317.805266633516	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCTGCGCATCAAGGCAT	NA	False	NA	NA	False	NA	NA	NA	50101497	50175404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_50101710_50120698_50120765_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
transcript_46893.nnic	chr6	+	1815	12	NNC	ENSMUSG00000038388.15	novel	616	3	NA	NA	33760	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	331.464643540386	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCTGCGCATCAAGGCAT	NA	False	NA	NA	False	NA	NA	NA	50121599	50175404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_50121699_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
transcript_46895.nnic	chr6	+	1887	12	NNC	ENSMUSG00000038388.15	novel	616	3	NA	NA	33823	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	332.870510648667	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCTGCGCATCAAGGCAT	NA	False	NA	NA	False	NA	NA	NA	50121662	50175404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_50121834_50122753_50122873_50135661_50135815_50139565_50139716_50140401_50140630_50155368_50155501_50157155_50157256_50157570_50157640_50160689_50160852_50171505_50171709_50173493_50173623_50175133
transcript_46897.known	chr6	-	2133	10	FSM	ENSMUSG00000029821.16	ENSMUST00000170142.8	2133	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	6.09998988058258	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTAGTTGGCTGTTCTAT	8766	False	NA	-2	True	ATTAAA	-16	NA	50238749	50184382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_50185187_50193329_50193404_50196216_50196419_50197968_50198097_50199715_50199881_50204258_50204380_50206265_50206438_50222909_50223103_50228255_50228494_50238713
transcript_469.known	chr1	-	681	1	FSM	ENSMUSG00000102070.2	ENSMUST00000188231.2	681	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	172	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTCACTATGAAGCTAA	NA	False	NA	NA	False	ACTAAA	-32	NA	24654646	24653965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_24654000_24654600
transcript_46904.known	chr6	-	3123	3	FSM	ENSMUSG00000063694.6	ENSMUST00000161401.2	3123	3	0	0	0	0	multi-exon	FALSE	canonical	3	4909	junction_2	335	403	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACACTCGCTGTCCAGGAA	NA	False	NA	NA	False	AATAAA	-15	NA	50543518	50539542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_50542366_50542471_50542649_50543395
transcript_46906.known	chr6	-	1703	13	FSM	ENSMUSG00000004980.17	ENSMUST00000203954.3	1703	13	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_2	3043.32879243911	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACTTGGTGTAATGCTTAC	NA	False	NA	-21	True	AATAAA	-17	NA	51446827	51438100	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
transcript_46914.known	chr6	-	1728	12	FSM	ENSMUSG00000004980.17	ENSMUST00000114459.8	1728	12	0	0	0	0	multi-exon	FALSE	canonical	3	874	junction_11	2433.70552759395	1027	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446806	51439739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51444370_51444407_51446650
transcript_4694.known	chr10	+	1955	5	FSM	ENSMUSG00000020325.11	ENSMUST00000020575.5	1955	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	2.6809513236909	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTATTTTCTGCCTCCTT	NA	False	NA	NA	False	AATAAA	-17	NA	79613105	79618464	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79613232_79614396_79614583_79615798_79616015_79616957_79617186_79617265
transcript_46944.known	chr6	-	1662	12	FSM	ENSMUSG00000004980.17	ENSMUST00000090002.10	1662	12	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_2	2567.02803044511	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACTTGGTGTAATGCT	NA	False	NA	-24	True	AATAAA	-14	NA	51446825	51438103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_46945.known	chr6	-	1542	11	FSM	ENSMUSG00000004980.17	ENSMUST00000204158.3	1542	11	0	0	0	0	multi-exon	FALSE	canonical	3	287	junction_2	2968.11001312283	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTACTTGGTGTAATGCT	NA	False	NA	-24	True	AATAAA	-14	NA	51446825	51438103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_51438414_51438899_51439036_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_46946.known	chr6	-	1647	10	FSM	ENSMUSG00000004980.17	ENSMUST00000069949.13	1647	10	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_1	2676.86493431088	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTGTGCACTGCTACAACT	NA	False	NA	NA	False	AATAAA	-16	NA	51446874	51437911	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_51438414_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_46947.known	chr6	-	1638	11	FSM	ENSMUSG00000004980.17	ENSMUST00000203220.3	1638	11	0	0	0	0	multi-exon	FALSE	canonical	3	5712	junction_10	720.046137410652	684	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446752	51439739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51441407_51441528_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_46948.known	chr6	-	1518	10	FSM	ENSMUSG00000004980.17	ENSMUST00000204188.3	1518	10	0	0	0	0	multi-exon	FALSE	canonical	3	933	junction_3	2022.94680547408	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTGTAATTATAGACTTTT	NA	False	NA	-14	True	AATAAA	-17	NA	51446752	51439739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_51440235_51440390_51440474_51441068_51441192_51442158_51442222_51443121_51443203_51443282_51443385_51443474_51443686_51443885_51444033_51444164_51444276_51446650
transcript_46949.known	chr6	-	766	2	FSM	ENSMUSG00000004980.17	ENSMUST00000204090.2	766	2	0	0	0	0	multi-exon	FALSE	canonical	3	7812	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGTACATTTATGATTTAA	NA	False	NA	-54	True	TTTAAA	-33	NA	51441140	51439779	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_51440474_51441068
transcript_4695.known	chr10	+	2519	8	FSM	ENSMUSG00000035863.15	ENSMUST00000105379.3	2519	8	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_7	12.869835005206	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	79629405	79656730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79629575_79642473_79642526_79642867_79642949_79643411_79643543_79645303_79645455_79648176_79648199_79651018_79651076_79654874
transcript_46954.known	chr6	+	1719	6	FSM	ENSMUSG00000029836.16	ENSMUST00000114446.8	1719	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	927.333381260483	675	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGATGACTTTTTTTTGTC	NA	False	NA	-1	True	AATAAA	-19	NA	51447674	51460684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_51447715_51448795_51448849_51452210_51452354_51455417_51455581_51458703_51458799_51459459
transcript_46959.known	chr6	+	2480	7	FSM	ENSMUSG00000038301.16	ENSMUST00000049152.15	2480	7	0	0	0	0	multi-exon	FALSE	canonical	3	298	junction_5	39.9433626804532	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTTCGATTTCTTACTT	NA	False	NA	NA	False	ATTAAA	-24	NA	51500880	51567659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_51501015_51538997_51539045_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
transcript_46963.known	chr6	+	2464	7	FSM	ENSMUSG00000038301.16	ENSMUST00000179365.8	2464	7	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	112.931272118144	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAACTTTGTTCGAT	NA	False	NA	NA	False	ATTAAA	-15	NA	51521502	51567650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_51521630_51538997_51539045_51552882_51552970_51556829_51556931_51557281_51557381_51565195_51565409_51565860
transcript_46964.nnic	chr6	-	1723	13	NNC	ENSMUSG00000059182.9	novel	3382	13	NA	NA	-19	1	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	141.475753713804	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATGACTTAGCCTGGTAT	809	False	NA	-6	True	AATAAA	-19	NA	51989548	51836144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_51836616_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980736_51989314
transcript_46966.known	chr6	-	3382	13	FSM	ENSMUSG00000059182.9	ENSMUST00000204778.3	3382	13	0	0	0	0	multi-exon	FALSE	canonical	3	457	junction_9	27.4919180043073	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTTATGATGCTAATAATT	828	False	NA	-5	True	AATAAA	-18	NA	51989529	51834401	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_51836551_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980736_51989314
transcript_4697.known	chr10	+	3110	14	FSM	ENSMUSG00000006498.17	ENSMUST00000172282.8	3110	14	0	0	0	0	multi-exon	FALSE	canonical	3	966	junction_8	238.590734232364	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCCTGCCTGTCATTGG	1383	False	NA	23	True	AATAAA	-13	NA	79690260	79700266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79695950_79696029_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
transcript_46972.known	chr6	-	1583	13	FSM	ENSMUSG00000059182.9	ENSMUST00000078214.8	1583	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	147.952390052416	440	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGATGACTTAGCCTGGTA	862	False	NA	-7	True	AATAAA	-18	NA	51989495	51836145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_51836551_51836978_51837080_51851454_51851568_51856750_51856829_51884866_51885002_51885348_51885413_51886279_51886405_51898259_51898344_51899242_51899321_51972996_51973105_51980060_51980087_51980629_51980715_51989314
transcript_46977.nnic	chr6	+	1127	6	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	-23	540	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	61.4543733187476	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTACACAACTAAGATCCA	755	False	NA	NA	False	AATAAA	-20	NA	52079905	52090048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_52080017_52082951_52083012_52083344_52083500_52083750_52083877_52089331_52089536_52089577
transcript_46986.nnic	chr6	+	629	5	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	55.1106840821269	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAGAA	755	False	NA	NA	False	NA	NA	NA	52079905	52089508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_52080017_52082951_52083012_52083344_52083500_52083750_52083877_52089331
transcript_46988.nnic	chr6	+	1169	5	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	-23	540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	55.1106840821269	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTACACAACTAAGATCCA	755	False	NA	NA	False	AATAAA	-20	NA	52079905	52090048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_52080017_52082951_52083012_52083344_52083500_52083750_52083877_52089331
transcript_46991.nnic	chr6	+	972	5	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	-23	540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	66.9533419628923	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTACACAACTAAGATCCA	755	False	NA	NA	False	AATAAA	-20	NA	52079905	52090048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_52080017_52082951_52083012_52083750_52083877_52089331_52089536_52089577
transcript_47.known	ERCC-00143	+	767	1	FSM	ERCC-00143A	DQ668362	767	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00143_+_0_800
transcript_470.known	chr1	+	4453	16	FSM	ENSMUSG00000073725.9	ENSMUST00000191471.7	4453	16	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_9	21.4185796810983	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTCGACTAATGAACAGCTT	NA	False	NA	NA	False	CATAAA	-22	NA	24717710	24804529	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_24717898_24724477_24724655_24732021_24732083_24743901_24744000_24745057_24745126_24750592_24750682_24753989_24754064_24767626_24767753_24770827_24770981_24782963_24783029_24783336_24783440_24783946_24784052_24785885_24786036_24787880_24787960_24801272_24801365_24801703
transcript_47003.nnic	chr6	+	907	4	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	-19	540	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	91.2335221042987	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTACACAACTAAGATCCA	759	False	NA	NA	False	AATAAA	-20	NA	52079909	52090048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_52080017_52083750_52083877_52089331_52089512_52089554
transcript_47007.nnic	chr6	+	908	4	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	-19	540	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	91.2335221042987	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTACACAACTAAGATCCA	759	False	NA	NA	False	AATAAA	-20	NA	52079909	52090048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_52080017_52083750_52083877_52089331_52089536_52089577
transcript_47009.nnic	chr6	+	902	4	NNC	ENSMUSG00000085412.8	novel	391	3	NA	NA	-19	540	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_3	91.2335221042987	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATTACACAACTAAGATCCA	759	False	NA	NA	False	AATAAA	-20	NA	52079909	52090048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_52080017_52083750_52083877_52089331_52089556_52089603
transcript_47016.known	chr6	+	408	3	FSM	ENSMUSG00000085412.8	ENSMUST00000155758.2	408	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	88.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCCAGAGAAGTTGCCAA	832	False	NA	NA	False	CATAAA	-25	NA	52079982	52089168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_52080017_52083750_52083877_52088920
transcript_47017.known	chr6	+	391	3	FSM	ENSMUSG00000085412.8	ENSMUST00000125374.8	391	3	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	38	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAGAAAGAAAGAAAGAA	778	False	NA	NA	False	NA	NA	NA	52079928	52089508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_52080017_52083750_52083877_52089331
transcript_47020.known	chr6	+	511	3	FSM	ENSMUSG00000085412.8	ENSMUST00000189071.7	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	103.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGCCCCGATCGAATGGAA	823	False	NA	NA	False	AAAAAG	-27	NA	52079973	52090664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_52080017_52083750_52083877_52090322
transcript_47025.known	chr6	-	2043	3	FSM	ENSMUSG00000029844.10	ENSMUST00000120363.2	2043	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	5.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGTATGCCTAAGCATCTT	NA	False	NA	-11	True	AATAAA	-14	NA	52135297	52132574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_52134070_52134546_52134642_52134844
transcript_47026.known	chr6	-	2251	2	FSM	ENSMUSG00000029844.10	ENSMUST00000000964.6	2251	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTAAGCATCTTGTGTA	NA	False	NA	-6	True	AATAAA	-19	NA	52135297	52132569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_52134070_52134546
transcript_47027.known	chr6	+	552	2	FSM	ENSMUSG00000087626.2	ENSMUST00000133723.2	552	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTAAAAGTCTCTTATTTA	NA	False	NA	NA	False	AGTAAA	-22	NA	52149860	52151039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_52149989_52150615
transcript_47028.known	chr6	-	2009	2	FSM	ENSMUSG00000038236.9	ENSMUST00000048715.9	2009	2	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAAACACGGACTGCTTT	9954	False	NA	NA	False	AATAAA	-14	NA	52194485	52191477	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_52193011_52194009
transcript_47030.known	chr6	-	1436	2	FSM	ENSMUSG00000000938.12	ENSMUST00000121043.2	1436	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGACCTGGCTGGTTGAAA	8346	False	NA	NA	False	NA	NA	NA	52217834	52208901	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_52209761_52217257
transcript_47031.known	chr6	-	1045	2	FSM	ENSMUSG00000000938.12	ENSMUST00000142611.2	1045	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAGGTCAATGGTGCAAGGA	8405	False	NA	NA	False	NA	NA	NA	52217775	52209061	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_52209761_52217429
transcript_47032.known	chr6	-	213	1	FSM	ENSMUSG00000059159.7	ENSMUST00000118230.2	213	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	454	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGCCCTCTGCGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	52323927	52323714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_52323700_52323900
transcript_47036.known	chr6	-	1825	8	FSM	ENSMUSG00000029776.12	ENSMUST00000031788.9	1825	8	0	0	0	0	multi-exon	FALSE	canonical	3	833	junction_5	85.7178570684555	452	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGGAGCTTTTTGTTTT	2839	False	NA	-1	True	AATAAA	-20	NA	52617374	52523212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_52524048_52525799_52525957_52533422_52533500_52534763_52534898_52596961_52597084_52599835_52599946_52607173_52607335_52617145
transcript_4704.known	chr10	+	3169	13	FSM	ENSMUSG00000006498.17	ENSMUST00000165704.8	3169	13	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_7	276.779833782898	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGACCACGTAATAGCATAA	1585	False	NA	NA	False	ATTAAA	-16	NA	79690462	79700605	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
transcript_47042.known	chr6	+	3285	18	FSM	ENSMUSG00000004535.13	ENSMUST00000080723.11	3285	18	0	0	0	0	multi-exon	FALSE	canonical	3	527	junction_12	67.9651854701079	158	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACCTTTGTAAATGATTCG	NA	False	NA	NA	False	AATAAA	-27	NA	52690713	52743765	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_52690841_52698282_52698452_52704183_52704287_52706265_52706454_52710175_52710335_52713834_52713984_52714066_52714158_52716528_52716715_52718935_52719161_52719676_52719824_52721206_52721340_52723654_52723756_52728069_52728196_52730289_52730362_52734538_52734714_52735197_52735341_52742005_52742089_52742857
transcript_47051.known	chr6	-	2203	5	FSM	ENSMUSG00000063568.12	ENSMUST00000074541.6	2203	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.82915619758885	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATAACCTTTTCCCCCGT	NA	False	NA	NA	False	NA	NA	NA	53045616	52745781	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_52747366_52754519_52754690_52789087_52789285_52870983_52871057_53045437
transcript_47052.nnic	chr6	+	646	5	NNC	ENSMUSG00000108175.2	novel	2065	5	NA	NA	26204	-9165	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	6.80073525436772	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTCTGTTTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	53821931	53836003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_53822096_53828082_53828119_53834180_53834359_53835502_53835591_53835823
transcript_47057.known	chr6	-	4810	8	FSM	ENSMUSG00000019124.11	ENSMUST00000019268.11	4810	8	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	7.92824967172092	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGGAGCCTCTTGTTTGT	NA	False	NA	0	True	AATAAA	-17	NA	54543474	54482874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_54486348_54489033_54489215_54497684_54497851_54499744_54499940_54502493_54502697_54511397_54511580_54525208_54525369_54543224
transcript_47058.nic	chr6	+	1374	12	ISM	ENSMUSG00000005225.16	ENSMUST00000101385.3	1838	14	12149	0	12149	0	3prime_fragment	FALSE	canonical	1	70	junction_1	63.1207684122958	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTTGCCCTAGTTAATTT	NA	False	NA	NA	False	AATAAA	-15	NA	54592280	54618018	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_54592356_54593617_54593743_54596178_54596338_54597256_54597298_54599105_54599264_54601059_54601217_54601537_54601624_54605830_54605890_54606804_54606936_54607488_54607560_54612694_54612757_54617768
transcript_47059.known	chr6	-	2754	5	FSM	ENSMUSG00000038074.17	ENSMUST00000155047.6	2754	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	9.78199877325692	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTTTTGTACATGTGCAT	NA	False	NA	-1	True	AATAAA	-18	NA	54570133	54554589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_54556672_54562787_54562916_54563980_54564071_54566257_54566410_54569831
transcript_47061.known	chr6	-	2694	4	FSM	ENSMUSG00000038074.17	ENSMUST00000046520.13	2694	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	2.16024689946929	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTTTTGTACATGTGCATA	NA	False	NA	0	True	AATAAA	-19	NA	54570162	54554588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_54556672_54562787_54562916_54566257_54566410_54569831
transcript_47065.known	chr6	+	5303	3	FSM	ENSMUSG00000038065.14	ENSMUST00000190641.7	5303	3	0	0	0	0	multi-exon	TRUE	canonical	3	54	junction_2	0.5	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTATTTGTCGTCTTTACTC	NA	False	NA	7	True	ATTAAA	-19	NA	54658608	54680836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_54658917_54665990_54666114_54675964
transcript_47069.nnic	chr6	+	1682	5	NNC	ENSMUSG00000058446.15	novel	5886	5	NA	NA	7338	-3766	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	273.671792481432	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATCTAATGGTTAAGAATAC	NA	False	NA	14	True	AATAAA	-16	NA	54801770	54866719	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_54801890_54840884_54840981_54855333_54855440_54861749_54861832_54865440
transcript_4707.known	chr10	+	2598	13	FSM	ENSMUSG00000006498.17	ENSMUST00000095457.11	2598	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_3	485.428926883798	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTTCCCTGAGCCCTT	1624	False	NA	31	True	ATTAAA	-15	NA	79690501	79700193	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694905_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79697847_79697882_79698282_79698376_79698486_79698704_79698811_79698890_79698978
transcript_47072.known	chr6	-	3960	4	FSM	ENSMUSG00000002797.10	ENSMUST00000131475.2	3960	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	27.1947707391615	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAACGAAGAAAATAAGCAG	2700	False	NA	NA	False	TTTAAA	-26	NA	54969935	54959564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_54962987_54963817_54963954_54966396_54966543_54969679
transcript_47073.known	chr6	-	431	4	FSM	ENSMUSG00000002797.10	ENSMUST00000204301.3	431	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	52.7320269538984	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAATGAGTATAAAGGAAAG	2789	False	NA	NA	False	ATTAAA	-12	NA	54969846	54962916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_54962987_54963817_54963954_54966484_54966543_54969679
transcript_47074.known	chr6	+	2380	17	FSM	ENSMUSG00000029777.11	ENSMUST00000003572.10	2380	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	747.261037786495	252	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCATCTGTTGTGTTTCCAT	NA	False	NA	35	True	ATTAAA	-29	NA	55014991	55056485	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_55015219_55023398_55023501_55025051_55025155_55027304_55027447_55029160_55029250_55030113_55030191_55032734_55032881_55037893_55038044_55040075_55040239_55042432_55042598_55045045_55045154_55046325_55046472_55050323_55050410_55052366_55052477_55053939_55054034_55054567_55054759_55056204
transcript_47080.known	chr6	+	4270	18	FSM	ENSMUSG00000038022.12	ENSMUST00000053094.8	4270	18	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_8	4.83570915636814	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACATGTGTGCTAAGGGTC	NA	False	NA	NA	False	ATTAAA	-16	NA	55180367	55297207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_55180555_55188234_55188355_55193491_55193728_55195206_55195454_55200982_55201354_55232595_55232652_55237519_55237627_55239703_55239821_55240760_55240850_55253538_55253641_55255031_55255096_55256069_55256136_55261730_55261799_55274672_55274737_55277927_55278090_55285139_55285321_55286246_55286320_55295247
transcript_47083.known	chr6	-	494	5	FSM	ENSMUSG00000091625.9	ENSMUST00000170382.5	494	5	0	0	0	0	multi-exon	TRUE	canonical	3	1056	junction_2	222.021395365402	401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGATTTGATTTATTATG	NA	False	NA	NA	False	AATAAA	-16	NA	56681677	56678047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_56678275_56679080_56679154_56679990_56680019_56680298_56680395_56681607
transcript_47084.known	chr6	-	416	4	FSM	ENSMUSG00000091625.9	ENSMUST00000203958.2	416	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	641.947211398431	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGATTTGATTTATTATG	NA	False	NA	NA	False	AATAAA	-16	NA	56681695	56678047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_56678275_56679080_56679154_56679990_56680019_56681607
transcript_47085.known	chr6	-	757	4	FSM	ENSMUSG00000091625.9	ENSMUST00000175865.6	757	4	0	0	0	0	multi-exon	FALSE	canonical	3	1056	junction_2	255.422525762053	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGATTTGATTTATTA	NA	False	NA	NA	False	AATAAA	-14	NA	56681662	56678049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_56678275_56679080_56679154_56679990_56680395_56681607
transcript_47087.known	chr6	+	6670	16	FSM	ENSMUSG00000029787.11	ENSMUST00000031805.11	6670	16	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_4	11.3247025960459	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGGGCTATTGATCTCCTA	NA	False	NA	43	True	AATAAA	-21	NA	56691911	56738897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_56692200_56700460_56700582_56702060_56702147_56703235_56703308_56705172_56705263_56705581_56705649_56706704_56706746_56707626_56707666_56712347_56712418_56713422_56713962_56718353_56718489_56720316_56720537_56723265_56723384_56730349_56730404_56730822_56730912_56734256
transcript_47089.known	chr6	+	1414	1	FSM	ENSMUSG00000029787.11	ENSMUST00000205188.2	1414	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGATTGCT	NA	False	NA	NA	False	AGTAAA	-26	NA	56691883	56693297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_56691900_56693300
transcript_47090.known	chr6	-	3816	4	FSM	ENSMUSG00000059486.12	ENSMUST00000114323.8	3816	4	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_3	4.02768199119819	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTGGTTTTTTGGTTTT	9703	False	NA	0	True	AATAAA	-17	NA	56774721	56754508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_56757399_56758785_56758952_56766203_56766686_56774443
transcript_47092.known	chr6	+	3009	10	FSM	ENSMUSG00000029781.8	ENSMUST00000031795.8	3009	10	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_6	57.9369602069757	322	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCTGGCTTTATGGTATT	NA	False	NA	36	True	CATAAA	-14	NA	56809043	56856343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_56809413_56826622_56826769_56827547_56827738_56828346_56828493_56833217_56833408_56837640_56837787_56845704_56845892_56850351_56850498_56852653_56852818_56855018
transcript_47097.known	chr6	-	1519	10	FSM	ENSMUSG00000029780.15	ENSMUST00000101367.9	1519	10	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_9	89.8419737478734	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTTGTCCAGATCATAT	9834	False	NA	0	True	AATAAA	-26	NA	56878871	56859384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56874759_56874815_56878822
transcript_47098.known	chr6	-	1067	10	FSM	ENSMUSG00000029780.15	ENSMUST00000152447.9	1067	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_9	88.9986821930458	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCGTGAGAAGACTTCCCC	1317	False	NA	NA	False	TATAAA	-6	NA	56900804	56859935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56874759_56874815_56900656
transcript_47103.known	chr6	-	1676	9	FSM	ENSMUSG00000029780.15	ENSMUST00000031793.8	1676	9	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_8	16.5486970786222	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTTGTCCAGATCATAT	1204	False	NA	0	True	AATAAA	-26	NA	56900917	56859384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_56860044_56860659_56860861_56861693_56861857_56863648_56863739_56865307_56865394_56866447_56866495_56868476_56868547_56869774_56869874_56900656
transcript_47106.known	chr6	+	4767	23	FSM	ENSMUSG00000029798.12	ENSMUST00000031817.10	4767	23	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	5.39819375974673	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACAAAAAGCCTTATTTTC	NA	False	NA	NA	False	TATAAA	-35	NA	57557984	57641617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_57558218_57560157_57560318_57561534_57561612_57575413_57575642_57576949_57577045_57581057_57581186_57584026_57584164_57584618_57584693_57587787_57587907_57588759_57588820_57595597_57595692_57596429_57596620_57602880_57603036_57623111_57623217_57624049_57624158_57629016_57629155_57631373_57631518_57634993_57635161_57636660_57636725_57637075_57637147_57639050_57639235_57639327_57639431_57639684
transcript_47113.known	chr6	-	3573	2	FSM	ENSMUSG00000043162.8	ENSMUST00000053386.6	3573	2	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_1	0	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTTCATTCTTTGAGT	NA	False	NA	NA	False	ATTAAA	-15	NA	57669063	57663560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_57666864_57668793
transcript_47114.known	chr6	+	2509	9	FSM	ENSMUSG00000062190.13	ENSMUST00000050077.15	2509	9	0	0	0	0	multi-exon	TRUE	canonical	3	58	junction_1	7.80924932371864	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCTATCCATAGCCCTTCA	NA	False	NA	NA	False	TATAAA	-25	NA	57679620	57715467	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_57680249_57689972_57690091_57699481_57699690_57700473_57700622_57701530_57701678_57703401_57703585_57709180_57709358_57711001_57711075_57714640
transcript_47115.nnic	chr6	+	3002	9	NNC	ENSMUSG00000062190.13	novel	2245	10	NA	NA	264	3	intron_retention	FALSE	canonical	1	1	junction_1	24.6361015584853	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATGGAGTCTTAATATTT	NA	False	NA	11	True	AATAAA	-21	NA	57680335	57716427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_57680497_57689972_57690091_57699481_57699690_57700473_57700622_57701530_57701678_57703401_57703585_57709180_57709358_57711001_57711075_57714640
transcript_47116.nnic	chr6	+	2971	9	NNC	ENSMUSG00000062190.13	novel	2245	10	NA	NA	275	3	intron_retention	FALSE	canonical	3	6	junction_1	23.0349598436811	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTATGGAGTCTTAATATTT	NA	False	NA	11	True	AATAAA	-21	NA	57680346	57716427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_57680477_57689972_57690091_57699481_57699690_57700473_57700622_57701530_57701678_57703401_57703585_57709180_57709358_57711001_57711075_57714640
transcript_47117.known	chr6	-	769	6	FSM	ENSMUSG00000037788.15	ENSMUST00000204878.3	769	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	6.01331855134916	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACAACTTACCCACCCCCT	NA	False	NA	NA	False	NA	NA	NA	57802135	57731547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_57731662_57739419_57739557_57751695_57751774_57766961_57767021_57785520_57785678_57801911
transcript_47118.known	chr6	-	2919	5	FSM	ENSMUSG00000037788.15	ENSMUST00000114297.5	2919	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0.866025403784439	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGCTGTGATTTTTTTGG	NA	False	NA	-2	True	AATAAA	-14	NA	57802144	57729249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_57731662_57739419_57739557_57751695_57751774_57766961_57767021_57801911
transcript_47119.known	chr6	+	438	1	FSM	ENSMUSG00000071419.8	ENSMUST00000121788.2	438	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	71	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCGAGGCCAATAAAGACTGG	NA	False	NA	-20	True	NA	NA	NA	57994490	57994928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_57994500_57994900
transcript_4712.known	chr10	+	1765	12	FSM	ENSMUSG00000006498.17	ENSMUST00000057343.16	1765	12	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_8	513.000459136617	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGGCAGGAAATGGCTTGG	1608	False	NA	NA	False	ATTAAA	-16	NA	79690485	79699258	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79690556_79692337_79692369_79694585_79694659_79694785_79695106_79695185_79695357_79695435_79695547_79695614_79695790_79696657_79696804_79698282_79698376_79698486_79698704_79698811_79698890_79698978
transcript_47125.nnic	chr6	+	2270	17	NNC	ENSMUSG00000029802.14	novel	5717	16	NA	NA	-75	-62	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	52.4486355875918	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCAGTGTTCTTTTCTTC	NA	False	NA	14	True	ATTAAA	-21	NA	58572884	58669434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_58573003_58573993_58574094_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
transcript_47127.nic	chr6	+	2245	17	NIC	ENSMUSG00000029802.14	novel	2178	16	NA	NA	-28	-62	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	58.2246457696395	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCAGTGTTCTTTTCTTC	NA	False	NA	14	True	ATTAAA	-21	NA	58617502	58669434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_58617613_58627445_58627529_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
transcript_47128.nnic	chr6	+	2136	16	NIC	ENSMUSG00000029802.14	novel	600	5	NA	NA	-41	-62	combination_of_known_splicesites	FALSE	canonical	3	18	junction_1	43.6165106353087	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCCAGTGTTCTTTTCTTC	NA	False	NA	14	True	ATTAAA	-21	NA	58572918	58669434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_58573003_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
transcript_47131.known	chr6	+	5717	16	FSM	ENSMUSG00000029802.14	ENSMUST00000031822.13	5717	16	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	36.1961323900773	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTGTCTGTTTGCAG	NA	False	NA	NA	False	NA	NA	NA	58573655	58672661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_58574094_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
transcript_47132.known	chr6	+	2178	16	FSM	ENSMUSG00000029802.14	ENSMUST00000114294.8	2178	16	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	24.9849732617205	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACATTATCTGTCACAT	NA	False	NA	76	True	NA	NA	NA	58617548	58669496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_58617613_58632622_58632842_58640598_58640659_58641428_58641544_58642088_58642242_58643866_58644025_58646171_58646324_58648994_58649100_58651552_58651804_58655260_58655344_58660214_58660305_58661317_58661443_58662651_58662807_58666539_58666630_58667515_58667605_58669227
transcript_47133.known	chr6	+	701	4	FSM	ENSMUSG00000029802.14	ENSMUST00000124542.2	701	4	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	32.7651576458218	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATATGTTTACCCATCCTT	NA	False	NA	NA	False	NA	NA	NA	58617530	58641768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_58617613_58632622_58632842_58640598_58640659_58641428
transcript_47134.known	chr6	-	1844	1	FSM	ENSMUSG00000055430.5	ENSMUST00000059539.5	1844	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCTGTACTGTCATCTAT	NA	False	NA	-1	True	AATAAA	-20	NA	58884061	58882217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_58882200_58884100
transcript_47135.known	chr6	+	3007	2	FSM	ENSMUSG00000049232.4	ENSMUST00000062626.4	3007	2	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	0	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGATGACTTTTTCTGAA	NA	False	NA	9	True	NA	NA	NA	59185854	59189018	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_59186167_59186323
transcript_47139.known	chr6	-	1280	6	FSM	ENSMUSG00000025889.14	ENSMUST00000114268.5	1280	6	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	4.2614551505325	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAATCTTTCCTGGTTCCTT	7574	False	NA	-6	True	AATAAA	-20	NA	60805988	60708562	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_60709146_60710087_60710172_60792600_60792744_60795307_60795350_60804464_60804612_60805707
transcript_47140.known	chr6	+	5168	24	FSM	ENSMUSG00000029920.10	ENSMUST00000031984.9	5168	24	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_1	41.9367603834104	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCTTTGTAATGGTTTTT	1727	False	NA	28	True	AATAAA	-30	NA	65019592	65093045	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_65019946_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65048968_65049071_65050177_65050260_65051745_65052135_65060787_65060988_65067079_65067171_65069478_65069579_65071114_65071175_65071273_65071350_65073014_65073151_65073673_65073812_65075593_65075690_65075779_65075898_65076249_65076372_65084758_65084948_65085635_65085755_65087353_65087537_65088759_65088870_65091284
transcript_47142.nnic	chr6	+	1054	7	NNC	ENSMUSG00000029920.10	novel	2821	10	NA	NA	0	28	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_6	143.665603244324	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTGTGCTGAATGTTTGG	1954	False	NA	NA	False	NA	NA	NA	65019819	65044450	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_65019946_65020189_65020430_65029603_65029782_65033386_65033553_65035049_65035117_65044030_65044123_65044265
transcript_47144.known	chr6	+	734	3	FSM	ENSMUSG00000029920.10	ENSMUST00000204696.3	734	3	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	64	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGTAGCAGAGCATTATGGA	1954	False	NA	5	True	AATAAA	-15	NA	65019819	65021187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_65019946_65020189_65020430_65020819
transcript_47146.known	chr6	+	600	3	FSM	ENSMUSG00000029920.10	ENSMUST00000205118.3	600	3	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	73	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTTTTGGAAATCTCCA	1785	False	NA	-67	True	AATAAA	-25	NA	65019650	65021115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_65019715_65020189_65020430_65020819
transcript_47147.known	chr6	+	2155	15	FSM	ENSMUSG00000029913.15	ENSMUST00000031976.14	2155	15	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	23.473389188611	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACGGCTCTTGACTTTCTT	NA	False	NA	NA	False	ATTAAA	-14	NA	65755971	65913360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_65756178_65771283_65771368_65808232_65808356_65832932_65833108_65834626_65834802_65836340_65836463_65839898_65839979_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
transcript_47152.known	chr6	+	1714	14	FSM	ENSMUSG00000029913.15	ENSMUST00000172638.2	1714	14	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_12	39.0006827432273	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGAGCGGCAAGGAACCAC	NA	False	NA	NA	False	NA	NA	NA	65756084	65913118	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_65756178_65771283_65771368_65808232_65808356_65832932_65833108_65834626_65834802_65836340_65836463_65839898_65839979_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65904900_65905006_65912953
transcript_47156.known	chr6	+	1488	11	FSM	ENSMUSG00000029913.15	ENSMUST00000031973.13	1488	11	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	49.012753442344	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATAAATTCAAAATAGA	NA	False	NA	NA	False	NA	NA	NA	65756008	65913282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_65756178_65771283_65771368_65808232_65808356_65846164_65846250_65847295_65847454_65858032_65858127_65860506_65860668_65863068_65863163_65878757_65878844_65904900_65905006_65912953
transcript_47162.known	chr6	-	479	2	FSM	ENSMUSG00000107479.2	ENSMUST00000203449.2	479	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGAGAGTTGCTGTGGCCAT	NA	False	NA	NA	False	NA	NA	NA	66442722	66431177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_66431429_66442494
transcript_47163.known	chr6	+	7557	6	FSM	ENSMUSG00000029910.15	ENSMUST00000116605.8	7557	6	0	0	0	0	multi-exon	FALSE	canonical	3	769	junction_5	83.3273064487266	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTATGTGTATGTGTGGT	NA	False	NA	NA	False	TATAAA	-21	NA	66512373	66524204	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754_66516935_66517409
transcript_47166.known	chr6	+	1725	5	FSM	ENSMUSG00000029910.15	ENSMUST00000101343.2	1725	5	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_4	68.2692280606717	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATAAAAATCAAGCTTTAAAA	NA	False	NA	19	True	AATAAA	-22	NA	66512451	66517975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_66512584_66512941_66513089_66514552_66514674_66515948_66516053_66516754
transcript_47169.known	chr6	+	1680	5	FSM	ENSMUSG00000029910.15	ENSMUST00000125430.2	1680	5	0	0	0	0	multi-exon	FALSE	canonical	3	769	junction_4	89.7646227642048	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAAAAATTAAGCCTTGT	NA	False	NA	48	True	TATAAA	-25	NA	66512408	66518004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_66513089_66514552_66514674_66515948_66516053_66516754_66516935_66517409
transcript_47170.known	chr6	-	423	1	FSM	ENSMUSG00000107176.2	ENSMUST00000202370.2	423	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9440	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTCCAGTGTATTTGTAAA	NA	False	NA	-60	True	NA	NA	NA	66852727	66852304	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_66852300_66852700
transcript_47173.known	chr6	+	1155	5	FSM	ENSMUSG00000036402.14	ENSMUST00000114226.8	1155	5	0	0	0	0	multi-exon	FALSE	canonical	2	34	junction_3	135.972423674803	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCCTTTGATGGGGTCT	NA	False	NA	17	True	AATAAA	-33	NA	66873417	66995273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_66873512_66891436_66891495_66920808_66920867_66992708_66992828_66994447
transcript_47176.known	chr6	+	680	5	FSM	ENSMUSG00000036402.14	ENSMUST00000114224.8	680	5	0	0	0	0	multi-exon	FALSE	canonical	2	34	junction_3	133.478462682187	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCTTGTCTTTACAAAATA	NA	False	NA	-78	True	NA	NA	NA	66873439	66994832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_66873500_66891436_66891495_66920808_66920867_66992708_66992828_66994447
transcript_47179.known	chr6	+	1354	5	FSM	ENSMUSG00000036402.14	ENSMUST00000114222.4	1354	5	0	0	0	0	multi-exon	FALSE	canonical	2	28	junction_1	134.228350209633	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAAAAAGGTAATGAA	NA	False	NA	NA	False	NA	NA	NA	66873532	66995130	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_66873974_66891436_66891495_66920808_66920862_66992708_66992828_66994447
transcript_47183.known	chr6	+	748	4	FSM	ENSMUSG00000036402.14	ENSMUST00000114228.8	748	4	0	0	0	0	multi-exon	FALSE	canonical	2	250	junction_2	52.550504807809	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCACTTCAGTCAAAAACC	NA	False	NA	3	True	ATTAAA	-9	NA	66873406	66994913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_66873512_66891436_66891495_66992708_66992828_66994447
transcript_47187.known	chr6	+	1876	4	FSM	ENSMUSG00000036402.14	ENSMUST00000114225.8	1876	4	0	0	0	0	multi-exon	FALSE	canonical	2	75	junction_1	120.748590974066	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCCTGGGCTCTGAGCG	NA	False	NA	NA	False	ACTAAA	-21	NA	66873423	66996070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_66873500_66891436_66891495_66992708_66992828_66994447
transcript_47190.nnic	chr6	+	697	3	NNC	ENSMUSG00000036402.14	novel	748	4	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	2	92	junction_1	138.5	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCACTTCAGTCAAAAACC	NA	False	NA	3	True	ATTAAA	-9	NA	66873379	66994913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_66873500_66992716_66992828_66994447
transcript_47192.nnic	chr6	+	1057	3	NNC	ENSMUSG00000036402.14	novel	1876	4	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	2	92	junction_1	138.5	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCCTTTGATGGGGTCT	NA	False	NA	17	True	AATAAA	-33	NA	66873379	66995273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_66873500_66992716_66992828_66994447
transcript_47193.nnic	chr6	+	705	3	NIC	ENSMUSG00000036402.14	novel	748	4	NA	NA	11	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	184.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATCACTTCAGTCAAAAACC	NA	False	NA	3	True	ATTAAA	-9	NA	66873391	66994913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_66873512_66992708_66992828_66994447
transcript_47197.known	chr6	-	1223	4	FSM	ENSMUSG00000036390.9	ENSMUST00000043098.9	1223	4	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	3.77123616632825	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATTTCTCAACGTGTGGT	NA	False	NA	-7	True	AATAAA	-19	NA	67014390	67012079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_67012757_67013661_67013900_67013993_67014096_67014184
transcript_4720.known	chr10	+	786	3	FSM	ENSMUSG00000057729.13	ENSMUST00000165982.2	786	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTTTCCTGTCTGTTTTA	186	False	NA	NA	False	AATAAA	-20	NA	79716813	79719008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79717012_79717768_79718000_79718651
transcript_47207.known	chr6	+	15474	8	FSM	ENSMUSG00000036371.7	ENSMUST00000042990.7	15474	8	0	0	0	0	multi-exon	FALSE	canonical	3	2187	junction_4	1676.62542517001	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGATGGTTTATATTTTTG	5485	False	NA	NA	False	AATAAA	-17	NA	67243607	67274720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
transcript_4721.known	chr10	-	2950	15	FSM	ENSMUSG00000013833.16	ENSMUST00000165684.8	2950	15	0	0	0	0	multi-exon	TRUE	canonical	3	153	junction_9	18.1911617921159	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAAAAAAAAGA	1837	False	NA	NA	False	NA	NA	NA	79744732	79730768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_79731245_79731460_79731545_79732181_79732399_79732592_79732786_79733398_79733533_79734069_79734281_79734730_79734938_79735034_79735244_79735930_79736087_79738256_79738363_79738830_79739263_79742598_79742769_79742872_79742981_79743324_79743491_79744651
transcript_47211.known	chr6	+	1617	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203077.3	1617	8	0	0	0	0	multi-exon	FALSE	canonical	3	3189	junction_3	1320.70455841276	1815	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTTCACTTCATTTGT	5872	False	NA	37	True	AATATA	-25	NA	67243994	67261295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
transcript_47213.known	chr6	+	1667	8	FSM	ENSMUSG00000036371.7	ENSMUST00000203436.3	1667	8	0	0	0	0	multi-exon	FALSE	canonical	3	2187	junction_4	1760.87005396161	1157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTTAAAGCTTTCACTTCA	5844	False	NA	32	True	AATATA	-20	NA	67243966	67261290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249802_67249923_67254744_67254923_67258631_67258806_67260886
transcript_47215.known	chr6	+	1336	8	FSM	ENSMUSG00000036371.7	ENSMUST00000204293.3	1336	8	0	0	0	0	multi-exon	FALSE	canonical	3	2743	junction_3	1435.93298973887	1132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5871	False	NA	19	True	NA	NA	NA	67243993	67261031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
transcript_47225.known	chr6	+	1166	7	FSM	ENSMUSG00000036371.7	ENSMUST00000205091.3	1166	7	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	2347.58275797799	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5872	False	NA	19	True	NA	NA	NA	67243994	67261031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_67244394_67248181_67248305_67249140_67249213_67249847_67249923_67254744_67254923_67258631_67258806_67260886
transcript_47229.known	chr6	+	1288	7	FSM	ENSMUSG00000036371.7	ENSMUST00000205106.3	1288	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2366.15668801164	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGACTGTCATTCATACCA	5866	False	NA	38	True	NA	NA	NA	67243988	67261050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249847_67249923_67254744_67254923_67258631_67258806_67260886
transcript_4723.nic	chr10	-	1792	8	NIC	ENSMUSG00000035781.15	novel	1898	8	NA	NA	-2	0	intron_retention	FALSE	canonical	3	6	junction_7	58.1177551991451	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCCCCGTGTTTGTC	9758	False	NA	-8	True	AATAAA	-15	NA	79752764	79745885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_79746974_79747775_79747832_79747908_79747995_79748229_79748316_79748482_79748604_79749058_79749181_79749390_79749516_79752656
transcript_4724.known	chr10	-	1898	8	FSM	ENSMUSG00000035781.15	ENSMUST00000045628.15	1898	8	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_7	14.1608831731957	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCCCCGTGTTTGTC	9682	False	NA	-8	True	AATAAA	-15	NA	79752840	79745885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_79746974_79747775_79747832_79747908_79747995_79748229_79748316_79748482_79748604_79749058_79749181_79749390_79749546_79752656
transcript_47245.known	chr6	+	1928	5	FSM	ENSMUSG00000036371.7	ENSMUST00000203167.3	1928	5	0	0	0	0	multi-exon	FALSE	canonical	3	3189	junction_3	1481.85447581738	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATAACTAGTGAAACTCAT	5872	False	NA	NA	False	NA	NA	NA	67243994	67250994	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_67244394_67248181_67248333_67248870_67249012_67249122_67249213_67249847
transcript_4725.nnic	chr10	-	1850	8	NNC	ENSMUSG00000035781.15	novel	1898	8	NA	NA	-12	0	intron_retention	FALSE	canonical	3	8	junction_3	56.5190955630511	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCCCCGTGTTTGTC	9748	False	NA	-8	True	AATAAA	-15	NA	79752774	79745885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_79746974_79747775_79747832_79747908_79748013_79748229_79748316_79748482_79748604_79749058_79749181_79749390_79749546_79752656
transcript_47252.known	chr6	-	1829	9	FSM	ENSMUSG00000053604.6	ENSMUST00000066134.6	1829	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.992156741649222	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTGTCTTCTCTGCCGA	8005	False	NA	-5	True	AATAAA	-20	NA	70769216	70742703	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_70743633_70747977_70748078_70750413_70750556_70751234_70751304_70752092_70752158_70754335_70754396_70760544_70760601_70762528_70762590_70768869
transcript_47255.known	chr6	+	354	1	FSM	ENSMUSG00000068396.10	ENSMUST00000121998.2	354	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13767	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGCACATTTTTTAAGTA	NA	False	NA	NA	False	NA	NA	NA	71101593	71101947	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_71101600_71101900
transcript_47256.known	chr6	-	2077	9	FSM	ENSMUSG00000054474.16	ENSMUST00000160918.8	2077	9	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_8	2.47171499166065	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACAGTTCTTTCCTGTT	NA	False	NA	NA	False	NA	NA	NA	71121423	71105149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_71105837_71106195_71106348_71108631_71108758_71108858_71109008_71111064_71111296_71115634_71115788_71116732_71116928_71118203_71118439_71121274
transcript_47257.known	chr6	-	1821	10	FSM	ENSMUSG00000054474.16	ENSMUST00000074241.9	1821	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	3.32591767713239	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGGTGTTTTGTTTTGTT	NA	False	NA	0	True	NA	NA	NA	71121331	71105381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_71105837_71106195_71106348_71108631_71108758_71108858_71109008_71111064_71111296_71115634_71115788_71116732_71116928_71118203_71118439_71118668_71118737_71121274
transcript_47258.known	chr6	+	1687	3	FSM	ENSMUSG00000053012.18	ENSMUST00000204436.3	1687	3	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_2	14.5	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTGTGTCAGTGCT	NA	False	NA	6	True	AATAAA	-18	NA	71248660	71262303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_71248825_71259134_71259302_71260947
transcript_47259.known	chr6	+	2874	2	FSM	ENSMUSG00000073018.7	ENSMUST00000114185.4	2874	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTTGTGATGTGATT	NA	False	NA	11	True	NA	NA	NA	71270748	71279864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_71270843_71277084
transcript_47260.known	chr6	-	3768	6	FSM	ENSMUSG00000002222.15	ENSMUST00000149415.2	3768	6	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	59.0748677527085	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGACTGATACTCTCTGCT	NA	False	NA	NA	False	AATAAA	-27	NA	71376277	71365870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_71368962_71370086_71370173_71371608_71371764_71373835_71373939_71375344_71375511_71376110
transcript_47262.known	chr6	+	998	7	FSM	ENSMUSG00000053119.12	ENSMUST00000065364.5	998	7	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_6	144.919997086515	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGTTTGTTTTTGCC	NA	False	NA	NA	False	NA	NA	NA	71520900	71559593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_71521018_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624_71556821_71559386
transcript_47265.known	chr6	+	2654	6	FSM	ENSMUSG00000053119.12	ENSMUST00000059462.12	2654	6	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_5	32.5490399243972	410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTATATTATGCCTTTG	NA	False	NA	23	True	NA	NA	NA	71520780	71558563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_71521018_71529382_71529444_71537880_71538061_71551098_71551221_71554714_71554830_71556624
transcript_47277.known	chr6	-	4816	27	FSM	ENSMUSG00000053470.14	ENSMUST00000065509.11	4816	27	0	0	0	0	multi-exon	TRUE	canonical	3	176	junction_18	110.285703472991	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAGATAATCATTTCTTAGT	NA	False	NA	-4	True	AATAAA	-18	NA	71609889	71565955	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71588488_71589001_71590815_71590980_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480_71609564_71609821
transcript_47278.nic	chr6	-	3195	17	NIC	ENSMUSG00000053470.14	novel	4753	26	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	172	junction_16	78.1394736592844	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGCTGTTCTTTGTCCTTT	NA	False	NA	-17	True	ATTAAA	-19	NA	71586132	71566020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_71566700_71567421_71567557_71567641_71567819_71568838_71568979_71569056_71569177_71570858_71570990_71571506_71571601_71572465_71572638_71573639_71573877_71574200_71574374_71576300_71576497_71576997_71577126_71577475_71577572_71577706_71577860_71580917_71581133_71584385_71584591_71585988
transcript_4728.nic	chr10	-	1909	7	NIC	ENSMUSG00000035781.15	novel	1898	8	NA	NA	-12	0	intron_retention	FALSE	canonical	3	145	junction_6	11.977989072554	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCCCCGTGTTTGTC	9748	False	NA	-8	True	AATAAA	-15	NA	79752774	79745885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_79746974_79747775_79747995_79748229_79748316_79748482_79748604_79749058_79749181_79749390_79749546_79752656
transcript_47283.nic	chr6	-	1834	12	NIC	ENSMUSG00000053470.14	novel	4816	27	NA	NA	24	261	combination_of_known_junctions	FALSE	canonical	3	43	junction_2	74.9501211550523	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTAAATGATATGTTTCT	NA	False	NA	NA	False	AATAAA	-31	NA	71609950	71588468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_71589001_71590815_71590980_71593801_71593855_71596941_71597031_71597121_71597195_71597427_71597553_71598328_71598432_71601576_71601688_71602742_71602899_71609039_71609256_71609480_71609564_71609821
transcript_47285.nic	chr6	-	1358	3	ISM	ENSMUSG00000053470.14	ENSMUST00000205470.2	1718	11	-9	8531	-9	-8	5prime_fragment	FALSE	canonical	3	172	junction_2	138	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTCGATAAATGTGGAT	NA	False	NA	NA	False	AATAAA	-27	NA	71586132	71580123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_71581133_71584385_71584591_71585988
transcript_47286.known	chr6	-	3721	4	FSM	ENSMUSG00000052962.4	ENSMUST00000065103.4	3721	4	0	0	0	0	multi-exon	FALSE	canonical	3	1437	junction_1	9.53356643071673	543	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTAGTCTTTCTTCCCAT	NA	False	NA	NA	False	AGTAAA	-20	NA	71800794	71789980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_71793272_71794588_71794734_71795652_71795843_71800699
transcript_47289.known	chr6	+	2728	15	FSM	ENSMUSG00000052337.16	ENSMUST00000064062.13	2728	15	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_4	225.763692603481	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATGAAAACTGAGTACTC	NA	False	NA	-1	True	AATAAA	-6	NA	71808314	71852228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829713_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
transcript_47290.known	chr6	+	2299	15	FSM	ENSMUSG00000052337.16	ENSMUST00000101301.10	2299	15	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_4	278.631248156016	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTAGGAAGAGTTGTGTA	NA	False	NA	NA	False	NA	NA	NA	71808396	71851914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71830156_71830253_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
transcript_47295.nic	chr6	+	2609	14	NIC	ENSMUSG00000052337.16	novel	2728	15	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	3	109	junction_5	436.803951799537	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTACTCTATCCCTTTT	NA	False	NA	9	True	AATAAA	-16	NA	71808314	71852238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71829746_71829852_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
transcript_47297.known	chr6	+	2413	13	FSM	ENSMUSG00000052337.16	ENSMUST00000166938.8	2413	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	399.840558500788	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGAGTACTCTATCCC	NA	False	NA	5	True	AATAAA	-12	NA	71808401	71852234	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849908_71851300
transcript_47299.known	chr6	+	2469	13	FSM	ENSMUSG00000052337.16	ENSMUST00000166975.8	2469	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	527.655558948154	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGAGTACTCTATCCC	NA	False	NA	5	True	AATAAA	-12	NA	71808316	71852234	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_71808500_71821622_71821697_71823269_71823460_71828755_71828865_71833895_71834033_71837986_71838091_71839328_71839465_71840124_71840255_71843709_71843725_71845563_71845788_71848410_71848543_71849777_71849879_71851300
transcript_4730.known	chr10	+	3911	10	FSM	ENSMUSG00000035754.9	ENSMUST00000045247.9	3911	10	0	0	0	0	multi-exon	FALSE	canonical	3	1673	junction_5	33.7828943493195	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAATGCTGCTGCTACTT	2286	False	NA	NA	False	NA	NA	NA	79795985	79806037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79796207_79796835_79796947_79800759_79800894_79801043_79801186_79801813_79801958_79802039_79802105_79802178_79802304_79802393_79802561_79803153_79803223_79803304
transcript_47301.known	chr6	-	2581	24	FSM	ENSMUSG00000063884.7	ENSMUST00000082094.5	2581	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	208.34992196086	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTCTTTGTAAGCGTGTAC	3048	False	NA	-3	True	AATAAA	-26	NA	71885734	71857623	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866354_71866577_71866671_71869452_71869504_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
transcript_4731.known	chr10	+	2460	7	FSM	ENSMUSG00000004665.11	ENSMUST00000004784.11	2460	7	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	7.8616509433805	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGTGGCACACGCCTT	1769	False	NA	NA	False	NA	NA	NA	79824417	79831896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79824575_79827193_79827316_79828106_79828174_79828276_79828415_79829047_79829165_79829261_79829409_79830184
transcript_47311.nnic	chr6	-	2544	23	NIC	ENSMUSG00000063884.7	novel	2581	24	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_9	264.585833375751	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTGTAAGCGTGTACAT	3036	False	NA	-1	True	AATAAA	-28	NA	71885746	71857621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_71858216_71858489_71858649_71859171_71859214_71860427_71860577_71861523_71861610_71862292_71862384_71862481_71862561_71865540_71865648_71866324_71866354_71866577_71866671_71870365_71870511_71871270_71871357_71871804_71871866_71872888_71872977_71874096_71874153_71875323_71875440_71878179_71878304_71879839_71879945_71880409_71880479_71882081_71882128_71884636_71884674_71884777_71884831_71885617
transcript_47328.nic	chr6	+	3322	20	ISM	ENSMUSG00000049553.12	ENSMUST00000055296.11	9216	34	-8	27325	0	0	5prime_fragment	FALSE	canonical	3	275	junction_3	22.8414989005135	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	71886036	71932134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_71886224_71889859_71890065_71892004_71892155_71894725_71894834_71897425_71897512_71897632_71897737_71901573_71901682_71903267_71903374_71903632_71903796_71906292_71906464_71906648_71906772_71908577_71908809_71913279_71913535_71918330_71918523_71925333_71925484_71926323_71926508_71927563_71927647_71927746_71927906_71929969_71930069_71931676
transcript_47329.nic	chr6	+	1820	6	ISM	ENSMUSG00000049553.12	ENSMUST00000205517.2	4572	15	12558	5575	12558	-3115	internal_fragment	FALSE	canonical	3	330	junction_1	46.2151490314594	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAAGACTTAAGTTTTTAAT	NA	False	NA	20	True	AATAAA	-30	NA	71951081	71956344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_71951196_71951727_71952004_71953002_71953204_71954317_71954436_71954927_71955093_71955398
transcript_47330.known	chr6	+	1492	6	FSM	ENSMUSG00000049553.12	ENSMUST00000205842.2	1492	6	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_3	18.8191391939164	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGTCCTGAGACGAGTAC	NA	False	NA	NA	False	ATTAAA	-13	NA	71886052	71898404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_71886224_71889859_71890065_71892004_71892155_71894725_71894834_71897425_71897512_71897632
transcript_47331.known	chr6	+	2258	7	FSM	ENSMUSG00000056091.13	ENSMUST00000069994.11	2258	7	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_5	8.15304987242334	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGAGTGTTTGTTCCTTC	NA	False	NA	20	True	NA	NA	NA	72074575	72131555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_72074767_72105247_72105372_72109035_72109148_72119123_72119468_72124052_72124240_72126002_72126162_72130414
transcript_47333.known	chr6	-	2244	13	FSM	ENSMUSG00000056305.5	ENSMUST00000070345.5	2244	13	0	0	0	0	multi-exon	FALSE	canonical	3	571	junction_6	46.7748745470139	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGCTTGTGGGTGGGCACT	NA	False	NA	67	True	NA	NA	NA	72322167	72295660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72296223_72296722_72296810_72298238_72298375_72302628_72302772_72305500_72305690_72306432_72306501_72310092_72310171_72313242_72313469_72314684_72314838_72315375_72315513_72316949_72317045_72319881_72319952_72321867
transcript_47335.known	chr6	+	4605	4	FSM	ENSMUSG00000058706.6	ENSMUST00000077783.5	4605	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	6.54896090146283	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTTTGCCAAAAGTTGTG	8326	False	NA	15	True	AATAAA	-15	NA	72324316	72330131	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_72324499_72324575_72324695_72325511_72325664_72325979
transcript_47337.known	chr6	+	1033	2	FSM	ENSMUSG00000058706.6	ENSMUST00000205472.2	1033	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTTTGGGGGGTGTCAGG	8318	False	NA	NA	False	NA	NA	NA	72324308	72326158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_72324695_72325511
transcript_47338.known	chr6	+	1546	8	FSM	ENSMUSG00000055912.9	ENSMUST00000069695.9	1546	8	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	17.1583263538524	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGTGTGTTCTGGAGAAT	NA	False	NA	10	True	ATTAAA	-21	NA	72332429	72336745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_72332528_72333113_72333296_72333704_72333753_72334032_72334120_72334931_72335000_72335290_72335419_72335561_72335740_72335988
transcript_47342.known	chr6	-	1100	5	FSM	ENSMUSG00000055850.13	ENSMUST00000125554.8	1100	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	461.587681269767	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCACTCTTAGTTTCTGGC	8480	False	NA	NA	False	NA	NA	NA	72339343	72336854	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72338294_72338354_72339258
transcript_47344.known	chr6	-	1434	5	FSM	ENSMUSG00000055850.13	ENSMUST00000069580.12	1434	5	0	0	0	0	multi-exon	FALSE	canonical	3	875	junction_2	66.4266512779321	1245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCGTGTGGTTCTGCTGTGT	8408	False	NA	NA	False	TATAAA	-15	NA	72339415	72336696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72338394_72338523_72339223
transcript_47345.known	chr6	-	789	5	FSM	ENSMUSG00000055850.13	ENSMUST00000129233.8	789	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	481.225194165892	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTTAAAACTGATAAATTAAC	8450	False	NA	-38	True	NA	NA	NA	72339373	72337259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72337626_72337857_72337933_72338104_72338210_72338394_72338523_72339258
transcript_47347.known	chr6	-	869	5	FSM	ENSMUSG00000055850.13	ENSMUST00000114095.2	869	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	424.836071326341	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGTAGCTGTTTAAAACT	8458	False	NA	-49	True	NA	NA	NA	72339365	72337270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72337626_72337857_72337997_72338104_72338210_72338394_72338523_72339223
transcript_47348.known	chr6	-	617	4	FSM	ENSMUSG00000055850.13	ENSMUST00000151063.2	617	4	0	0	0	0	multi-exon	FALSE	canonical	2	47	junction_3	415.627236836086	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGGTCTGAGTGTTCTTTT	8475	False	NA	-97	True	NA	NA	NA	72339348	72337318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72339223
transcript_47349.known	chr6	-	638	4	FSM	ENSMUSG00000055850.13	ENSMUST00000126065.8	638	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	435.806022088829	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTTAAAACTGATAAATTAA	8477	False	NA	-39	True	NA	NA	NA	72339346	72337260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72337626_72337857_72337933_72338099_72338210_72339258
transcript_47353.known	chr6	-	728	4	FSM	ENSMUSG00000055850.13	ENSMUST00000133978.2	728	4	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_3	424.755877599776	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACCTCCACGGAGCCAT	8412	False	NA	NA	False	NA	NA	NA	72339411	72337595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72337933_72338099_72338210_72338394_72338523_72339258
transcript_47357.known	chr6	-	623	3	FSM	ENSMUSG00000073002.10	ENSMUST00000101285.10	623	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	4	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTCTCTCTCTCTCTCT	9583	False	NA	NA	False	AGTAAA	-21	NA	72357405	72346010	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72346454_72347176_72347315_72357363
transcript_47358.known	chr6	-	820	3	FSM	ENSMUSG00000050732.10	ENSMUST00000059983.10	820	3	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	0.5	203	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGGCGCTTTACTCCTGTG	8093	False	NA	-18	True	AATAAA	-25	NA	72367686	72362205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72362637_72365244_72365404_72367456
transcript_47359.known	chr6	+	2929	15	FSM	ENSMUSG00000053460.9	ENSMUST00000065906.9	2929	15	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_7	7.03816128585544	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTACCTGGCTTATTAATAG	1281	False	NA	12	True	NA	NA	NA	72391290	72407695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_72391433_72391654_72391826_72394837_72394997_72395283_72395450_72399398_72399478_72400916_72401024_72402768_72402933_72403343_72403610_72404024_72404157_72404880_72405033_72405440_72405611_72405779_72405911_72406115_72406264_72406426_72406623_72406949
transcript_4736.nnic	chr10	+	593	3	NNC	ENSMUSG00000035722.16	novel	6696	47	NA	NA	17030	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	34	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGCCACGGCTGAGTTTG	9583	False	NA	10	True	AATAAA	-19	NA	79850478	79851406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_79850564_79850780_79851022_79851139
transcript_47360.known	chr6	-	1400	9	FSM	ENSMUSG00000053907.11	ENSMUST00000206692.2	1400	9	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	259.956697115116	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAATACTTTCGCCATGA	NA	False	NA	NA	False	AATAAA	-25	NA	72416539	72411527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72411723_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
transcript_47361.known	chr6	-	2804	9	FSM	ENSMUSG00000053907.11	ENSMUST00000059472.10	2804	9	0	0	0	0	multi-exon	FALSE	canonical	3	591	junction_1	84.6271233116192	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTGTCTATTACTTGT	NA	False	NA	-11	True	AATAAA	-17	NA	72416541	72409781	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72411379_72411963_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
transcript_47365.known	chr6	-	3387	8	FSM	ENSMUSG00000053907.11	ENSMUST00000205335.2	3387	8	0	0	0	0	multi-exon	FALSE	canonical	3	761	junction_3	40.6724095420862	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGTGTCTATTACTTGT	NA	False	NA	-11	True	AATAAA	-17	NA	72416539	72409781	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72412098_72412188_72412372_72412793_72413013_72413179_72413324_72413399_72413513_72413977_72414101_72414353_72414432_72416328
transcript_4737.nic	chr10	+	2251	11	ISM	ENSMUSG00000035697.15	ENSMUST00000150022.2	2980	15	4424	-6	4424	0	3prime_fragment	TRUE	canonical	3	63	junction_3	14.0943250991312	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGCCCGATCTTGTTCTT	314	False	NA	12	True	AATAAA	-17	NA	79862000	79867302	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_79862181_79862266_79862392_79862490_79862569_79862656_79862762_79862866_79863040_79863372_79863562_79863654_79863793_79864490_79864718_79864806_79865018_79866122_79866211_79866565
transcript_47370.nnic	chr6	+	1293	10	NNC	ENSMUSG00000056737.15	novel	411	2	NA	NA	-6175	0	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_1	26.1283630950102	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTCCTGTGTGGCTTGT	NA	False	NA	10	True	AATAAA	-21	NA	72515198	72539964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_72515323_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
transcript_47371.known	chr6	+	1247	10	FSM	ENSMUSG00000056737.15	ENSMUST00000071044.13	1247	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	22.7389913671443	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTGTGTGGCTTGTCC	NA	False	NA	12	True	AATAAA	-23	NA	72521373	72539966	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_72521450_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
transcript_47372.known	chr6	+	1400	10	FSM	ENSMUSG00000056737.15	ENSMUST00000114071.8	1400	10	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	14.6439217576592	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTCCTGTGTGGCTTGTCC	NA	False	NA	12	True	AATAAA	-23	NA	72526255	72539966	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_72526485_72532255_72532292_72532459_72532633_72532733_72532889_72533067_72533236_72534693_72534844_72535147_72535241_72535721_72535855_72538010_72538100_72539792
transcript_47374.known	chr6	-	2164	13	FSM	ENSMUSG00000056698.12	ENSMUST00000114069.8	2164	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_12	16.532795690183	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCTTCCAAGATGAAGTT	NA	False	NA	1	True	AATAAA	-23	NA	72575325	72542904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72573418_72573450_72575304
transcript_47375.known	chr6	-	2122	12	FSM	ENSMUSG00000056698.12	ENSMUST00000070990.8	2122	12	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_11	7.42677755109095	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATCTCTGGTATTTTCTTC	NA	False	NA	-11	True	AATAAA	-11	NA	72575326	72542916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72543847_72545797_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72575304
transcript_47377.known	chr6	-	2509	11	FSM	ENSMUSG00000056698.12	ENSMUST00000141833.8	2509	11	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_10	7.7	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATAAAAATAAATAAAAATAG	NA	False	NA	NA	False	NA	NA	NA	72575378	72544532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72545926_72546243_72546321_72552623_72552755_72554236_72554360_72554547_72554672_72556606_72556699_72557283_72557353_72563427_72563498_72564593_72564669_72571722_72572004_72575304
transcript_47379.known	chr6	+	3027	11	FSM	ENSMUSG00000056666.14	ENSMUST00000070597.13	3027	11	0	0	0	0	multi-exon	FALSE	canonical	3	404	junction_1	54.9894535342915	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTTTGATATCTGAAATTT	NA	False	NA	NA	False	AATATA	-25	NA	72575457	72585408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_72575780_72577955_72578139_72578458_72578701_72579637_72579840_72580636_72580835_72581848_72581969_72582954_72583094_72583367_72583478_72583555_72583723_72583856_72584017_72584224
transcript_4738.nnic	chr10	+	1410	5	NNC	ENSMUSG00000035697.15	novel	3948	23	NA	NA	6665	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	39.7617907041421	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGCCCGATCTTGTTCTT	2555	False	NA	12	True	AATAAA	-17	NA	79864241	79867302	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_79864389_79864490_79864718_79864806_79865018_79866122_79866211_79866565
transcript_47380.known	chr6	-	5013	4	FSM	ENSMUSG00000056429.5	ENSMUST00000070524.5	5013	4	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	25.9786236911983	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAGCATTGAAACATTACAT	4419	False	NA	-37	True	AATAAA	-12	NA	72593983	72585414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72589094_72591054_72591139_72592506_72593433_72593659
transcript_47383.known	chr6	-	3251	7	FSM	ENSMUSG00000055239.11	ENSMUST00000068697.11	3251	7	0	0	0	0	multi-exon	FALSE	canonical	3	1059	junction_2	56.146880788003	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCACTCGAATTTCTTTGG	8465	False	NA	-9	True	AATAAA	-18	NA	72876962	72818096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72820114_72825207_72825491_72826426_72826602_72827365_72827468_72835756_72835897_72838740_72838909_72876596
transcript_47386.known	chr6	-	570	3	FSM	ENSMUSG00000079523.9	ENSMUST00000114050.8	570	3	0	0	0	0	multi-exon	FALSE	canonical	3	26814	junction_1	200.5	3734	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGTGGTCTGAATTTTTTA	NA	False	NA	-11	True	AATAAA	-20	NA	72935471	72934329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72934636_72934895_72935008_72935319
transcript_47387.known	chr6	-	433	2	FSM	ENSMUSG00000079523.9	ENSMUST00000144337.2	433	2	0	0	0	0	multi-exon	FALSE	canonical	3	27215	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCATTGAACAGGAAAAGA	NA	False	NA	NA	False	GGGGCT	-37	NA	72935382	72934637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72935008_72935319
transcript_47388.known	chr6	-	690	2	FSM	ENSMUSG00000079523.9	ENSMUST00000114049.2	690	2	0	0	0	0	multi-exon	FALSE	canonical	3	26814	junction_1	0	812	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGGCGTGGTCTGAAT	NA	False	NA	-17	True	AATAAA	-14	NA	72935285	72934335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_72934636_72934895
transcript_4739.nic	chr10	+	1526	4	ISM	ENSMUSG00000035697.15	ENSMUST00000150022.2	2980	15	6651	-6	6651	0	3prime_fragment	FALSE	canonical	3	84	junction_1	10.6249183003395	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGCCCGATCTTGTTCTT	2541	False	NA	12	True	AATAAA	-17	NA	79864227	79867302	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_79864718_79864806_79865018_79866122_79866211_79866565
transcript_47391.known	chr6	+	1519	9	FSM	ENSMUSG00000052738.15	ENSMUST00000064740.9	1519	9	0	0	0	0	multi-exon	FALSE	canonical	3	1222	junction_2	134.074081667562	905	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGAAGACTTTTTATTG	2315	False	NA	19	True	AATAAA	-23	NA	73225364	73253894	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_73225737_73233153_73233258_73237457_73237575_73240790_73241004_73241212_73241271_73246297_73246382_73247953_73248106_73252183_73252373_73253664
transcript_47395.known	chr6	+	2767	3	FSM	ENSMUSG00000052738.15	ENSMUST00000127660.2	2767	3	0	0	0	0	multi-exon	FALSE	canonical	3	1222	junction_2	56.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAGAGA	2601	False	NA	NA	False	NA	NA	NA	73225650	73240034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_73225737_73233153_73233258_73237457
transcript_47396.known	chr6	-	2353	1	FSM	ENSMUSG00000072476.7	ENSMUST00000097218.7	2353	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTCACGAGGAAGTGGAAA	NA	False	NA	NA	False	NA	NA	NA	76474767	76472414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_76472400_76474800
transcript_47403.nnic	chr6	-	1227	6	NNC	ENSMUSG00000030045.11	novel	5000	5	NA	NA	-8	522	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	269.009293519759	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTCTGCATGTCAGTTT	NA	False	NA	NA	False	ATTAAA	-31	NA	81942947	81938432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_81938567_81938746_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
transcript_47405.nnic	chr6	-	1108	6	NNC	ENSMUSG00000030045.11	novel	5000	5	NA	NA	-8	403	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	269.009293519759	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTGTTCTGAGAATGCC	NA	False	NA	NA	False	NA	NA	NA	81942947	81938551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_81938567_81938746_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
transcript_47409.known	chr6	-	5000	5	FSM	ENSMUSG00000030045.11	ENSMUST00000032124.9	5000	5	0	0	0	0	multi-exon	FALSE	canonical	3	603	junction_3	40.9839907768875	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGCAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	81942939	81934831	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_81939144_81939296_81939479_81940914_81941050_81941219_81941339_81942687
transcript_47417.known	chr6	+	1773	3	FSM	ENSMUSG00000035104.15	ENSMUST00000042974.15	1773	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	1.5	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGCTTCGTGTCTGTGTG	NA	False	NA	NA	False	AATAAA	-19	NA	82018603	82070080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_82018883_82048035_82048224_82068774
transcript_4742.known	chr10	-	1148	7	FSM	ENSMUSG00000004667.19	ENSMUST00000004786.10	1148	7	0	0	0	0	multi-exon	FALSE	canonical	3	2552	junction_2	153.800375667797	1707	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5515	False	NA	-19	True	ATTAAA	-19	NA	79875629	79871782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_79872136_79872360_79872433_79872597_79872677_79872748_79872808_79873021_79873219_79874272_79874448_79875416
transcript_4743.known	chr10	-	900	6	FSM	ENSMUSG00000004667.19	ENSMUST00000152843.2	900	6	0	0	0	0	multi-exon	FALSE	canonical	3	2552	junction_2	164.012926319848	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGCCCACTGCTCTGCACA	5609	False	NA	NA	False	AATGAA	-37	NA	79875535	79872008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_79872136_79872360_79872433_79872597_79872808_79873021_79873219_79874272_79874448_79875416
transcript_47431.known	chr6	-	457	4	FSM	ENSMUSG00000030042.16	ENSMUST00000161309.8	457	4	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	435.143909784134	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAAAATCATACCCCTGCT	6109	False	NA	NA	False	NA	NA	NA	82682346	82595972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_82596120_82628417_82628460_82629063_82629149_82682163
transcript_47432.nic	chr6	-	686	4	NIC	ENSMUSG00000030042.16	novel	457	4	NA	NA	5	111	combination_of_known_junctions	FALSE	canonical	3	132	junction_1	385.203842140755	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTTTTTCTTTTTCTT	NA	False	NA	-13	True	NA	NA	NA	82629905	82595861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_82596120_82628417_82628460_82629063_82629149_82629604
transcript_47435.known	chr6	-	890	4	FSM	ENSMUSG00000030042.16	ENSMUST00000141138.8	890	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	458.476462500167	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATGTGATATAAAATTT	NA	False	NA	-36	True	NA	NA	NA	82629501	82624296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_82625018_82628417_82628460_82629063_82629149_82629459
transcript_47436.known	chr6	-	1769	4	FSM	ENSMUSG00000030042.16	ENSMUST00000095786.6	1769	4	0	0	0	0	multi-exon	FALSE	canonical	3	735	junction_3	133.522365999941	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTTCTTGAAGTGTCTTA	NA	False	NA	1	True	ATTAAA	-27	NA	82629910	82623681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_82625018_82628417_82628460_82629063_82629149_82629604
transcript_47449.nnic	chr6	-	934	4	NNC	ENSMUSG00000030042.16	novel	890	4	NA	NA	16580	0	at_least_one_novel_splicesite	FALSE	canonical	3	78	junction_3	429.604727886254	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATGTGATATAAAATTT	NA	False	NA	-36	True	NA	NA	NA	82665766	82624296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_82625018_82628417_82628460_82629063_82629149_82665680
transcript_47462.known	chr6	-	648	4	FSM	ENSMUSG00000030042.16	ENSMUST00000160281.8	648	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	443.647257276419	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACATGTGTGGTATGTGCT	NA	False	NA	NA	False	AATAAA	-33	NA	82629851	82598832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_82599107_82628417_82628460_82629063_82629149_82629604
transcript_47463.known	chr6	-	5513	18	FSM	ENSMUSG00000000628.11	ENSMUST00000000642.11	5513	18	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_14	56.0328005768445	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCAGTGTGTGATTGGAT	9398	False	NA	-1	True	AATAAA	-23	NA	82751435	82702005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_82704436_82705692_82705927_82706525_82706682_82707748_82707933_82708028_82708129_82709081_82709178_82711828_82711949_82712227_82712377_82713510_82713816_82715267_82715502_82716499_82716656_82719783_82719968_82720248_82720349_82720925_82721022_82721842_82721963_82726169_82726319_82737084_82737248_82750898
transcript_47464.known	chr6	+	1945	10	FSM	ENSMUSG00000030041.10	ENSMUST00000113980.4	1945	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	176.542723818721	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATTGTTCAGAGCATTCC	NA	False	NA	12	True	ATTAAA	-17	NA	82923882	83007164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982486_82982650_82983298_82983441_83003178_83003386_83005372_83005514_83006750
transcript_47467.nic	chr6	+	1832	9	NIC	ENSMUSG00000030041.10	novel	1945	10	NA	NA	-29	-1	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	187.231641289607	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATTGTTCAGAGCATTC	NA	False	NA	11	True	ATTAAA	-16	NA	82923853	83007163	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_82923934_82933389_82933688_82944947_82945134_82958796_82958966_82980710_82980885_82982486_82982650_82983298_82983441_83003178_83003386_83006750
transcript_47472.known	chr6	-	1807	5	FSM	ENSMUSG00000068335.7	ENSMUST00000089651.6	1807	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	5.31507290636732	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTCTGCGTATGAATGAG	NA	False	NA	-4	True	ATTAAA	-19	NA	83010452	83007914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83009042_83009211_83009397_83009515_83009610_83009747_83010048_83010351
transcript_47473.nic	chr6	-	1726	5	NIC	ENSMUSG00000068335.7	novel	1807	5	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	11.7686022959398	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCTCTGCGTATGAATGAG	NA	False	NA	-4	True	ATTAAA	-19	NA	83010445	83007914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_83009042_83009285_83009397_83009515_83009610_83009747_83010048_83010351
transcript_47474.known	chr6	-	1966	4	FSM	ENSMUSG00000068335.7	ENSMUST00000149918.2	1966	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	15.121728296285	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAAAGGCCTCTGCGTATG	NA	False	NA	-10	True	ATTAAA	-13	NA	83010449	83007920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83009397_83009515_83009610_83009747_83010046_83010351
transcript_47478.nic	chr6	-	1691	8	NIC	ENSMUSG00000068329.13	novel	1725	8	NA	NA	-43	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_4	183.177063888179	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTTGGATCTTCTCC	1854	False	NA	2	True	AATAAA	-31	NA	83031595	83028246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029708_83030018_83030052_83030309_83030505_83030593_83030799_83030901
transcript_4748.known	chr10	-	2403	4	FSM	ENSMUSG00000004667.19	ENSMUST00000143438.8	2403	4	0	0	0	0	multi-exon	FALSE	canonical	3	2552	junction_2	187.276978474843	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGTGCAATCCTAGAGA	5600	False	NA	-19	True	ATTAAA	-19	NA	79875544	79871782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_79872136_79872360_79872433_79872597_79874448_79875416
transcript_47484.known	chr6	-	1725	8	FSM	ENSMUSG00000068329.13	ENSMUST00000089645.13	1725	8	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_7	63.5991913695225	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTTGGATCTTCTCC	1897	False	NA	2	True	AATAAA	-31	NA	83031552	83028246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83029678_83029785_83030018_83030052_83030309_83030505_83030593_83030799_83030901
transcript_47491.nic	chr6	-	1567	7	NIC	ENSMUSG00000068329.13	novel	1725	8	NA	NA	-40	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_3	199.430578286168	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGGGGTTGGATCTTCTCC	1986	False	NA	2	True	AATAAA	-31	NA	83031463	83028246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_83028616_83028722_83028819_83029453_83029524_83029981_83030052_83030309_83030505_83030593_83030799_83030901
transcript_47492.known	chr6	-	1605	7	FSM	ENSMUSG00000068329.13	ENSMUST00000122955.8	1605	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	204.724543933767	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTACAGTCAAAAGTGGGG	1897	False	NA	-12	True	AATAAA	-17	NA	83031552	83028260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83028616_83028722_83028819_83029453_83029524_83030018_83030052_83030309_83030505_83030593_83030799_83030901
transcript_47496.known	chr6	+	1265	11	FSM	ENSMUSG00000068328.11	ENSMUST00000204343.4	1265	11	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	333.699805214207	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTCTCTGTTGCCTCTTTGG	5440	False	NA	9	True	ATTAAA	-19	NA	83031728	83034663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_83031814_83031891_83032030_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
transcript_47497.known	chr6	+	1491	12	FSM	ENSMUSG00000068328.11	ENSMUST00000203915.4	1491	12	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_10	313.3608012109	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGGTCTCTGTTGCCTCT	5423	False	NA	5	True	ATTAAA	-15	NA	83031711	83034659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_83031814_83031891_83032030_83032109_83032261_83032486_83032672_83032878_83032952_83033047_83033122_83033348_83033416_83033522_83033626_83033739_83033860_83033958_83034075_83034194_83034376_83034478
transcript_47498.known	chr6	+	737	5	FSM	ENSMUSG00000068328.11	ENSMUST00000203331.3	737	5	0	0	0	0	multi-exon	FALSE	canonical	3	960	junction_3	76.3560737597213	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCCCCAATCTCACATTAAA	578	False	NA	-29	True	AAAAAG	-14	NA	83033390	83034625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_83033626_83033739_83033860_83033958_83034075_83034256_83034376_83034478
transcript_47501.nnic	chr6	+	1724	11	NNC	ENSMUSG00000069678.11	novel	918	9	NA	NA	-5520	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	71.2011938102164	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTCATCTTCCTTCTTAC	804	False	NA	24	True	AATAAA	-16	NA	83049329	83057836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_83049526_83054554_83055220_83055381_83055460_83055875_83055982_83056096_83056250_83056414_83056487_83056620_83056727_83056902_83056937_83057034_83057122_83057530_83057612_83057690
transcript_47502.known	chr6	+	817	2	FSM	ENSMUSG00000034968.4	ENSMUST00000041265.4	817	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCCTCAATTCGGAAAGC	5261	False	NA	NA	False	AATAAA	-22	NA	83063347	83065224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_83063604_83064663
transcript_47503.known	chr6	+	695	3	FSM	ENSMUSG00000030037.10	ENSMUST00000113938.5	695	3	0	0	0	0	multi-exon	FALSE	canonical	3	747	junction_2	17.5	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	7383	False	NA	NA	False	ATTAAA	-19	NA	83086020	83086920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_83086185_83086294_83086408_83086502
transcript_47506.known	chr6	-	600	3	FSM	ENSMUSG00000087578.2	ENSMUST00000138422.2	600	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAAGGCACATGACAAGTCA	NA	False	NA	NA	False	NA	NA	NA	83085968	83083847	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83084172_83084723_83084896_83085864
transcript_47507.known	chr6	+	710	2	FSM	ENSMUSG00000030037.10	ENSMUST00000129656.2	710	2	0	0	0	0	multi-exon	FALSE	canonical	3	782	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTATTTTTCTCAGGTTGT	7463	False	NA	NA	False	ATTAAA	-19	NA	83086100	83086920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_83086185_83086294
transcript_47510.known	chr6	-	981	5	FSM	ENSMUSG00000030035.15	ENSMUST00000146328.4	981	5	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_4	48.7769156466458	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTCCTCCCATGGGGCTG	NA	False	NA	NA	False	NA	NA	NA	83098368	83096287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83097752_83097855_83098183
transcript_47513.known	chr6	-	1314	4	FSM	ENSMUSG00000030035.15	ENSMUST00000113936.10	1314	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	56.6627449623354	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTGTGATTCTGGGTAGAG	NA	False	NA	-7	True	ATTAAA	-17	NA	83098540	83096024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83096702_83096848_83097026_83097165_83097269_83098183
transcript_47514.known	chr6	-	1902	4	FSM	ENSMUSG00000030035.15	ENSMUST00000131939.6	1902	4	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_3	19.1369334592098	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGTGATTCTGGGTAGA	NA	False	NA	-8	True	ATTAAA	-16	NA	83098540	83096025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83096702_83096848_83097026_83097165_83097858_83098183
transcript_47515.nic	chr6	-	1482	4	NIC	ENSMUSG00000030035.15	novel	1419	5	NA	NA	-70	0	intron_retention	FALSE	canonical	3	121	junction_3	19.1369334592098	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGTGATTCTGGGTAGA	NA	False	NA	-8	True	ATTAAA	-16	NA	83098457	83096025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_83097026_83097165_83097269_83097752_83097858_83098183
transcript_47517.nic	chr6	-	1357	3	NIC	ENSMUSG00000030035.15	novel	1314	4	NA	NA	-50	0	intron_retention	FALSE	canonical	3	41	junction_2	62	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGTGATTCTGGGTAGA	NA	False	NA	-8	True	ATTAAA	-16	NA	83098437	83096025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_83097026_83097165_83097269_83098183
transcript_47519.known	chr6	-	462	2	FSM	ENSMUSG00000030035.15	ENSMUST00000123394.2	462	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCAGGCTACCCTTGGACT	NA	False	NA	NA	False	NA	NA	NA	83098240	83096620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83097026_83098183
transcript_47520.known	chr6	+	2191	12	FSM	ENSMUSG00000034930.17	ENSMUST00000065512.11	2191	12	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	17.934223251548	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCTTTCACTTGTCTT	3529	False	NA	18	True	ATTAAA	-18	NA	83112792	83129560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_83113041_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
transcript_47521.nic	chr6	+	2296	12	NIC	ENSMUSG00000034930.17	novel	653	6	NA	NA	-183	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	15.2196045821291	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCTTTCACTTGTCTT	1467	False	NA	18	True	ATTAAA	-18	NA	83119189	83129560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_83119543_83122911_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
transcript_47522.nnic	chr6	+	2142	11	NNC	ENSMUSG00000034930.17	novel	2191	12	NA	NA	-2015	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	22.1765642063869	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCTTTCACTTGTCTT	1058	False	NA	18	True	ATTAAA	-18	NA	83122800	83129560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126356_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
transcript_47523.nic	chr6	+	2054	11	ISM	ENSMUSG00000034930.17	ENSMUST00000087938.11	3080	12	8710	0	-2015	0	3prime_fragment	FALSE	canonical	3	54	junction_8	8.87693640846886	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTTCTTTCACTTGTCTT	1058	False	NA	18	True	ATTAAA	-18	NA	83122800	83129560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_83123112_83124469_83124532_83124632_83124687_83124808_83124927_83125086_83125297_83126444_83126540_83126652_83126760_83126952_83127082_83127888_83128058_83128217_83128323_83128866
transcript_47527.known	chr6	-	1216	11	FSM	ENSMUSG00000030032.15	ENSMUST00000125894.9	1216	11	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_10	9.65453261426984	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTTGTCTGAGCACTCAG	9882	False	NA	0	True	TATAAA	-18	NA	83133379	83129690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83129879_83129956_83130032_83130234_83130398_83130497_83130599_83131481_83131610_83131903_83131958_83132051_83132119_83132459_83132523_83132630_83132854_83133156_83133228_83133296
transcript_47528.known	chr6	+	4118	28	FSM	ENSMUSG00000031865.17	ENSMUST00000077407.12	4118	28	0	0	0	0	multi-exon	TRUE	canonical	3	372	junction_1	39.6793042772762	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGTCTGTGTGGCTCT	493	False	NA	NA	False	ATTAAA	-15	NA	83142901	83177098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_83142977_83159505_83159752_83160040_83160120_83160280_83160316_83166058_83166251_83166529_83166728_83166882_83167088_83167184_83167264_83167402_83167563_83167674_83167780_83167950_83168143_83168226_83168344_83168547_83168701_83169441_83169603_83169715_83169885_83170688_83170758_83170940_83171004_83171101_83171252_83171411_83171574_83171655_83171788_83171969_83172096_83172529_83172673_83172922_83173090_83174472_83174607_83174737_83174931_83175563_83175644_83176169_83176260_83176655
transcript_47532.nnic	chr6	+	2015	13	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	-34	277	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_11	174.270144698779	13	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATAAGGCAAGTGGCCAG	5692	False	NA	8	True	AATAAA	-18	NA	83254340	83280735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83276591_83276676_83277452_83277521_83280307
transcript_47533.nnic	chr6	+	3044	13	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	-34	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_12	141.117169598726	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCCATGTCTAATAACTGAG	5692	False	NA	25	True	AATAAA	-26	NA	83254340	83281927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307_83281566_83281644
transcript_47535.nnic	chr6	+	1988	12	NNC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	-34	277	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_2	141.343845443047	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATAAGGCAAGTGGCCAG	5692	False	NA	8	True	AATAAA	-18	NA	83254340	83280735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_83254554_83256945_83257147_83262747_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
transcript_47536.nic	chr6	+	1931	12	ISM	ENSMUSG00000068323.13	ENSMUST00000039212.8	5123	25	39984	1191	-34	277	3prime_fragment	FALSE	canonical	3	368	junction_2	56.2057907078168	102	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATAAGGCAAGTGGCCAG	5692	False	NA	8	True	AATAAA	-18	NA	83254340	83280735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
transcript_47537.nic	chr6	+	2339	12	ISM	ENSMUSG00000068323.13	ENSMUST00000039212.8	5123	25	39984	783	-34	685	3prime_fragment	FALSE	canonical	3	368	junction_2	56.2057907078168	34	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTGGCTCTGAGTGGATT	5692	False	NA	8	True	NA	NA	NA	83254340	83281143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_83254554_83256945_83257147_83262804_83262919_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
transcript_47549.nic	chr6	+	1817	11	NIC	ENSMUSG00000068323.13	novel	5123	25	NA	NA	-34	277	combination_of_known_junctions	FALSE	canonical	3	81	junction_2	130.075362770972	22	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAATAAGGCAAGTGGCCAG	5692	False	NA	8	True	AATAAA	-18	NA	83254340	83280735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_83254554_83256945_83257147_83265271_83265434_83266128_83266308_83267755_83267829_83272852_83272922_83273553_83273728_83274200_83274366_83276407_83276493_83277452_83277521_83280307
transcript_47557.known	chr6	-	2085	8	FSM	ENSMUSG00000005667.9	ENSMUST00000005810.9	2085	8	0	0	0	0	multi-exon	FALSE	canonical	3	2400	junction_5	123.349677166756	348	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTGTCTCAGTCAGAC	NA	False	NA	2	True	AATAAA	-35	NA	83294588	83282672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83283792_83285914_83286041_83286443_83286537_83287393_83287502_83288191_83288345_83288793_83288917_83290343_83290529_83294410
transcript_47574.known	chr6	+	4412	6	FSM	ENSMUSG00000043131.15	ENSMUST00000055261.11	4412	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_4	40.3554209493595	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCATTTATTATCTACGTC	NA	False	NA	98	True	ATTAAA	-21	NA	83302997	83320758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_83303250_83306848_83307016_83309435_83309530_83311057_83311192_83315262_83315427_83317157
transcript_47576.known	chr6	+	2312	4	FSM	ENSMUSG00000045160.15	ENSMUST00000136501.2	2312	4	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_1	124.478467571259	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGACTTCCATTCATGAC	349	False	NA	NA	False	AATATA	-32	NA	83326427	83337118	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_83326537_83328247_83328372_83330023_83330113_83335128
transcript_47577.known	chr6	+	554	4	FSM	ENSMUSG00000045160.15	ENSMUST00000122216.8	554	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	479.669330546228	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATGTGCCATGCTTCAGG	50	False	NA	26	True	ATTAAA	-26	NA	83326128	83335378	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_83326220_83328247_83328372_83330023_83330113_83335128
transcript_47578.known	chr6	-	2523	4	FSM	ENSMUSG00000034832.16	ENSMUST00000056191.2	2523	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.4142135623731	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAGAAAGAAAGAAAGAA	NA	False	NA	NA	False	NA	NA	NA	83418660	83375420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83375600_83379648_83381807_83418198_83418256_83418531
transcript_47582.known	chr6	-	1107	7	FSM	ENSMUSG00000014554.14	ENSMUST00000014698.10	1107	7	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_5	13.5369863706809	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483951	83457198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
transcript_47585.known	chr6	-	828	7	FSM	ENSMUSG00000014554.14	ENSMUST00000138941.3	828	7	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_3	102.417446430446	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGGTGTGTGCTGTCT	NA	False	NA	-39	True	NA	NA	NA	83483803	83457290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83457419_83458328_83458445_83458759_83458821_83463965_83464114_83467402_83467591_83473667_83473781_83483729
transcript_47586.nic	chr6	-	964	6	NIC	ENSMUSG00000014554.14	novel	1107	7	NA	NA	30	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_5	77.3356321497406	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483921	83457198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_83457419_83457824_83457925_83458328_83458445_83463965_83464114_83467402_83467591_83483729
transcript_47589.known	chr6	-	1007	6	FSM	ENSMUSG00000014554.14	ENSMUST00000113888.3	1007	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	78.3019795407498	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTTGTTCGTTTATTTC	NA	False	NA	-3	True	AATAAA	-23	NA	83483951	83457198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83457419_83458328_83458445_83463965_83464114_83467402_83467591_83473667_83473781_83483729
transcript_47594.known	chr6	-	2144	10	FSM	ENSMUSG00000006906.11	ENSMUST00000206400.2	2144	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	12.1146783737236	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGAGTGATTTGTCTGA	NA	False	NA	-10	True	AATAAA	-20	NA	83549415	83520198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83521019_83524212_83524313_83528925_83529039_83533256_83533395_83534418_83534544_83538656_83539024_83540804_83540901_83541162_83541239_83547284_83547502_83549323
transcript_47596.known	chr6	+	1242	3	FSM	ENSMUSG00000034777.3	ENSMUST00000037807.3	1242	3	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	5	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTCTGTCCCTGTTCT	NA	False	NA	21	True	AATAAA	-32	NA	83688245	83715295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_83688526_83710080_83710269_83714521
transcript_47597.known	chr6	-	546	2	FSM	ENSMUSG00000099354.7	ENSMUST00000189308.3	546	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATGGCTGGTGACCCTCA	NA	False	NA	NA	False	AATAAA	-21	NA	83739824	83738737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83739043_83739583
transcript_47598.known	chr6	-	2984	6	FSM	ENSMUSG00000014748.14	ENSMUST00000014892.8	2984	6	0	0	0	0	multi-exon	FALSE	canonical	3	526	junction_1	47.9474712576169	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCTGTAGTGTGTGACC	9712	False	NA	-4	True	NA	NA	NA	83752795	83745866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83748286_83748428_83748532_83749223_83749292_83750691_83750846_83751999_83752080_83752635
transcript_476.nic	chr1	-	2690	4	ISM	ENSMUSG00000048874.16	ENSMUST00000186733.7	7567	16	-123	27089	-9	3	5prime_fragment	FALSE	canonical	3	122	junction_2	3.09120616516523	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAATGGCTATTTTTCTTT	NA	False	NA	-9	True	AATAAA	-16	NA	30912785	30868508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_30870641_30876185_30876348_30902067_30902337_30912658
transcript_47609.nnic	chr6	+	1289	11	NNC	ENSMUSG00000034744.14	novel	1405	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_4	95.9064127157303	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTGTCATCTTCCATA	9437	False	NA	13	True	AATAAA	-21	NA	83772142	83779538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_83772265_83773888_83773974_83774158_83774258_83774762_83774826_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
transcript_4761.known	chr10	+	959	7	FSM	ENSMUSG00000075706.12	ENSMUST00000105372.9	959	7	0	0	0	0	multi-exon	FALSE	canonical	3	7423	junction_5	743.006878987148	1620	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGTCTTTGGGTC	655	False	NA	4	True	AATAAA	-14	NA	79889321	79892273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79889550_79890347_79890443_79890533_79890679_79890801_79890954_79891756_79891782_79891873_79891934_79892019
transcript_47613.known	chr6	+	1405	10	FSM	ENSMUSG00000034744.14	ENSMUST00000037376.14	1405	10	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_1	21.8281729836116	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTGTCATCTTCCATA	9258	False	NA	13	True	AATAAA	-21	NA	83771963	83779538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_83772265_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
transcript_47614.nnic	chr6	+	1327	10	NNC	ENSMUSG00000034744.14	novel	1405	10	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	77.5253045108897	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTGTCATCTTCCATA	9437	False	NA	13	True	AATAAA	-21	NA	83772142	83779538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_83772265_83773888_83774075_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
transcript_47615.nic	chr6	+	1405	10	NIC	ENSMUSG00000034744.14	novel	1405	10	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_4	97.4200526927935	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGGTGTCATCTTCCATA	9285	False	NA	13	True	AATAAA	-21	NA	83771990	83779538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_83772231_83773888_83773974_83774158_83774258_83774937_83775080_83775464_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
transcript_47616.known	chr6	+	1323	10	FSM	ENSMUSG00000034744.14	ENSMUST00000113851.8	1323	10	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	71.6054001687955	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCAGGGTGTCATCTTCCA	9304	False	NA	11	True	AATAAA	-19	NA	83772009	83779536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_83772231_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
transcript_47619.known	chr6	+	1049	10	FSM	ENSMUSG00000034744.14	ENSMUST00000146117.8	1049	10	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	70.680816193489	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGAAGTTGCGGCATTCTT	9484	False	NA	NA	False	NA	NA	NA	83772189	83779316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_83772357_83773888_83773974_83774158_83774258_83774937_83775080_83775525_83775637_83776252_83776366_83777252_83777341_83778072_83778171_83778479_83778559_83779249
transcript_47629.known	chr6	-	3982	5	FSM	ENSMUSG00000045896.15	ENSMUST00000058383.9	3982	5	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_4	4.71036092035419	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCTGGCCTCTGTCTATC	NA	False	NA	NA	False	AATAAA	-13	NA	83808723	83782382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83785875_83786880_83787058_83791703_83791852_83808252_83808311_83808616
transcript_4763.known	chr10	-	2156	15	FSM	ENSMUSG00000035673.11	ENSMUST00000217876.2	2156	15	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_14	37.9085903785645	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCATGGGTCTCCATTCCTC	5655	False	NA	0	True	AATAAA	-21	NA	79911273	79898249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79911061
transcript_47630.known	chr6	-	649	4	FSM	ENSMUSG00000045896.15	ENSMUST00000145593.8	649	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_3	4.98887651569859	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGGTTAGAAGCCTGAA	NA	False	NA	NA	False	NA	NA	NA	83808695	83786693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_83787058_83791703_83791852_83808252_83808311_83808616
transcript_47639.known	chr6	+	4366	26	FSM	ENSMUSG00000030016.15	ENSMUST00000113836.6	4366	26	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_22	87.4304294853914	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTTGTGTTTGTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	83891371	83963851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_83891462_83905634_83907148_83911930_83911993_83918226_83918266_83919815_83920124_83921594_83921870_83923198_83923346_83924800_83924924_83930065_83930125_83930316_83930370_83931692_83931744_83933675_83933745_83934490_83934575_83935165_83935235_83936912_83936951_83938958_83939091_83942510_83942640_83943428_83943471_83944274_83944410_83946098_83946222_83949227_83949266_83953183_83953337_83958663_83958768_83960957_83961057_83961758_83961878_83963539
transcript_47642.known	chr6	-	565	3	FSM	ENSMUSG00000033769.17	ENSMUST00000162786.2	565	3	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_1	24	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAGAATCATTGAGTAGT	NA	False	NA	NA	False	AATAAA	-31	NA	85046457	84981799	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_84982019_84988299_84988466_85046277
transcript_47645.known	chr6	-	1230	3	FSM	ENSMUSG00000033735.10	ENSMUST00000045986.8	1230	3	0	0	0	0	multi-exon	FALSE	canonical	3	345	junction_2	5	662	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGAGTGTGCGTTGTCCTTC	7982	False	NA	NA	False	AATACA	-21	NA	85114748	85110659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_85111271_85113804_85114096_85114420
transcript_47646.known	chr6	-	1081	13	FSM	ENSMUSG00000033720.13	ENSMUST00000059034.13	1081	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	2.88193607763176	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATAATGATCTCCCTGGCTC	NA	False	NA	NA	False	AATAAA	-14	NA	85310401	85211361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_85211606_85211744_85211831_85213821_85213938_85233324_85233416_85244853_85244920_85246079_85246137_85246891_85246946_85264031_85264058_85266158_85266214_85266743_85266771_85276521_85276600_85296503_85296573_85310289
transcript_47647.known	chr6	+	2486	13	FSM	ENSMUSG00000033706.14	ENSMUST00000045693.8	2486	13	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_7	60.725246442938	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAACAATGCCTTGTGGGG	NA	False	NA	28	True	AATAAA	-22	NA	85408970	85423417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_85409083_85415089_85415199_85415731_85415872_85416638_85416758_85417087_85417158_85417621_85417727_85418541_85418605_85418719_85418791_85419092_85419200_85419580_85419638_85421224_85421320_85421899_85421971_85422050
transcript_4765.known	chr10	-	4850	33	FSM	ENSMUSG00000035673.11	ENSMUST00000219260.2	4850	33	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_32	40.6571867686083	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGTGGCCTACAGGTCAG	NA	False	NA	4	True	AATATA	-21	NA	79940204	79892825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_79893699_79893789_79893981_79894086_79894164_79894249_79894382_79894470_79894567_79894638_79894734_79895769_79895914_79895998_79896074_79896227_79896337_79896423_79896496_79896622_79896736_79896817_79896954_79897149_79897282_79897995_79898166_79898401_79898594_79899482_79899563_79899978_79900077_79900153_79900331_79902383_79902538_79902664_79902771_79903110_79903229_79904161_79904306_79904518_79904610_79904692_79904827_79905115_79905271_79905444_79905542_79905801_79905886_79908190_79908353_79918448_79918561_79920074_79920149_79922090_79922267_79938443_79938556_79940035
transcript_47653.known	chr6	+	746	1	FSM	ENSMUSG00000033706.14	ENSMUST00000204615.2	746	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GCAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AGTAAA	-2	NA	85409054	85409800	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_85409100_85409800
transcript_47660.known	chr6	+	2441	12	FSM	ENSMUSG00000030007.9	ENSMUST00000032078.9	2441	12	0	0	0	0	multi-exon	FALSE	canonical	3	5555	junction_1	301.70819463638	6955	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGCTCTGCTGTGATGG	4610	False	NA	16	True	AGTAAA	-18	NA	85428495	85445457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_85429110_85436096_85436251_85436923_85437031_85438026_85438153_85438489_85438543_85439007_85439180_85441761_85441927_85442881_85443071_85443605_85443704_85444008_85444142_85444560_85444768_85445034
transcript_4767.known	chr10	+	2566	10	FSM	ENSMUSG00000003068.18	ENSMUST00000003152.14	2566	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	19.2898617266195	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACCTGGGCTGTTCTGTC	2647	False	NA	20	True	AATAAA	-24	NA	79951636	79966516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79952742_79960635_79960720_79961312_79961403_79961866_79962000_79962066_79962204_79962487_79962616_79962878_79962937_79963737_79963935_79965738_79965946_79966089
transcript_47673.known	chr6	-	1038	5	FSM	ENSMUSG00000030008.10	ENSMUST00000032080.9	1038	5	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_4	18.9786063766547	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCAGGTTTGTGCCTGTGTCC	NA	False	NA	NA	False	AATAAA	-16	NA	85428265	85423791	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_85424280_85424502_85424671_85424917_85425028_85425472_85425574_85428094
transcript_47674.known	chr6	-	953	5	FSM	ENSMUSG00000030008.10	ENSMUST00000126805.8	953	5	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	38.4991883031318	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCAGCTCCCAGCAGCC	NA	False	NA	NA	False	NA	NA	NA	85428952	85423919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_85424280_85424502_85424671_85424917_85425028_85425472_85425574_85428738
transcript_47677.known	chr6	-	1000	4	FSM	ENSMUSG00000030008.10	ENSMUST00000139875.8	1000	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	61.5593661074865	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACTGCAACCTCCGTGGA	NA	False	NA	NA	False	NA	NA	NA	85428927	85424189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_85424790_85424917_85425028_85425472_85425574_85428738
transcript_47678.known	chr6	-	955	4	FSM	ENSMUSG00000030008.10	ENSMUST00000146086.8	955	4	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_3	20.8219969156552	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGCCTCAAGGACATCTC	NA	False	NA	NA	False	NA	NA	NA	85428183	85424015	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_85424671_85424917_85425028_85425472_85425574_85428094
transcript_47681.nic	chr6	+	985	7	NIC	ENSMUSG00000054226.14	novel	2222	7	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_3	84.4801094275386	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	CCAAAAAAAAAAAAAAATTA	3363	False	NA	NA	False	NA	NA	NA	85892673	85906007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_85892773_85898404_85898494_85900114_85900199_85901341_85901505_85904222_85904346_85904789_85904967_85905757
transcript_47684.known	chr6	+	2222	7	FSM	ENSMUSG00000054226.14	ENSMUST00000113753.8	2222	7	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	87.3983536585342	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTTATTATGTC	3409	False	NA	24	True	NA	NA	NA	85892719	85907266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_85892773_85896898_85897007_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
transcript_47685.known	chr6	+	1216	6	FSM	ENSMUSG00000054226.14	ENSMUST00000089570.7	1216	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	87.3026918256247	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTAGATTTGGACTCTTA	3418	False	NA	NA	False	ATTAAA	-18	NA	85892728	85905502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_85892773_85898404_85898494_85900114_85900199_85901341_85901505_85904222_85904346_85904789
transcript_47686.known	chr6	+	2103	6	FSM	ENSMUSG00000054226.14	ENSMUST00000067137.14	2103	6	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	21.35790251874	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCCTTGGTTATTATG	3418	False	NA	22	True	NA	NA	NA	85892728	85907264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789_85904967_85905757
transcript_4769.known	chr10	+	1410	5	FSM	ENSMUSG00000003072.16	ENSMUST00000105367.8	1410	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	1062.04060656832	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTTCTGTTTCTAAC	3587	False	NA	15	True	ATTAAA	-14	NA	79977290	79981647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79977501_79977874_79978441_79979665_79979820_79981052_79981142_79981256
transcript_47694.known	chr6	+	716	5	FSM	ENSMUSG00000054226.14	ENSMUST00000202803.4	716	5	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	23.847169643377	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGGGACTCATTACATTT	3409	False	NA	NA	False	TATAAA	-35	NA	85892719	85905077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222_85904346_85904789
transcript_477.nnic	chr1	-	2741	4	NNC	ENSMUSG00000048874.16	novel	7567	16	NA	NA	-336	3	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	55.934485486743	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAATGGCTATTTTTCTTT	NA	False	NA	-9	True	AATAAA	-16	NA	30913338	30868508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_30870641_30876185_30876348_30902067_30902337_30913160
transcript_47700.known	chr6	+	692	4	FSM	ENSMUSG00000054226.14	ENSMUST00000113751.8	692	4	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	26.1916017074176	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGAGGGGGTTTTGTGTGC	3390	False	NA	NA	False	GGGGCT	-39	NA	85892700	85904590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_85892773_85898404_85898494_85901341_85901505_85904222
transcript_47701.known	chr6	-	1008	2	FSM	ENSMUSG00000057103.12	ENSMUST00000239124.2	1008	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCTAATGCATGTGATG	9874	False	NA	NA	False	NA	NA	NA	85892659	85887138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_85888003_85892515
transcript_47702.known	chr6	-	274	3	FSM	ENSMUSG00000057103.12	ENSMUST00000172982.2	274	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACCAGATTCTAATGCATG	9885	False	NA	NA	False	NA	NA	NA	85892648	85887143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_85887260_85887977_85888003_85892515
transcript_47705.nnic	chr6	-	1303	10	NNC	ENSMUSG00000030002.16	novel	6435	9	NA	NA	-7	231	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_6	97.2756043922449	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAGAAAACTTTCTGAACA	7313	False	NA	-33	True	AATAAA	-16	NA	85938656	85924493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_85924759_85926599_85926780_85926999_85927076_85927495_85927543_85929286_85929348_85930352_85930477_85932277_85932383_85935565_85935698_85936197_85936274_85938419
transcript_47706.known	chr6	-	6435	9	FSM	ENSMUSG00000030002.16	ENSMUST00000032071.13	6435	9	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_7	14.8070928949608	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGTACTATCTTGTATT	7320	False	NA	2	True	NA	NA	NA	85938649	85919249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_85924759_85926599_85926780_85926999_85927076_85927495_85927543_85929286_85929348_85930352_85930477_85935565_85935698_85936197_85936274_85938419
transcript_47708.known	chr6	+	759	3	FSM	ENSMUSG00000030001.5	ENSMUST00000032070.4	759	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGCTTGCTTGGAGATGA	NA	False	NA	NA	False	ATTAAA	-22	NA	85994172	85997978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_85994440_85995560_85995714_85997639
transcript_47709.known	chr6	+	210	1	FSM	ENSMUSG00000072940.6	ENSMUST00000119024.2	210	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGCAGCTGGGTTCTGGA	NA	False	NA	NA	False	NA	NA	NA	86311012	86311222	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_86311000_86311200
transcript_47710.known	chr6	+	1643	3	FSM	ENSMUSG00000057497.9	ENSMUST00000071492.9	1643	3	0	0	0	0	multi-exon	FALSE	canonical	3	1740	junction_2	62	222	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTCTTATGGGTAGTG	8617	False	NA	32	True	AATAAA	-16	NA	86342627	86347040	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_86342802_86343591_86343733_86345712
transcript_47712.nic	chr6	+	610	2	ISM	ENSMUSG00000057497.9	ENSMUST00000204893.2	448	3	-103	1778	-25	1	5prime_fragment	FALSE	canonical	3	1864	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAATTCCTTAAAATGTAT	8592	False	NA	3	True	AATACA	-18	NA	86342602	86344002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_86342802_86343591
transcript_47715.known	chr6	+	1055	4	FSM	ENSMUSG00000057278.9	ENSMUST00000089558.7	1055	4	0	0	0	0	multi-exon	FALSE	canonical	3	2623	junction_2	545.029866663796	1436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGGCAGCAGGCAGGCAG	NA	False	NA	NA	False	NA	NA	NA	86348285	86356310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_86348597_86352658_86352682_86353476_86353602_86355714
transcript_47716.known	chr6	+	375	4	FSM	ENSMUSG00000057278.9	ENSMUST00000204768.2	375	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1594.61865869764	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCATATGGAACTTTTT	NA	False	NA	-20	True	NA	NA	NA	86348585	86355840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_86348687_86352658_86352682_86353476_86353602_86355714
transcript_47717.known	chr6	+	746	4	FSM	ENSMUSG00000057278.9	ENSMUST00000204380.3	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	1590.13130135708	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTTTCTGCTGTTGTGGA	NA	False	NA	29	True	AATAAA	-20	NA	86348552	86355889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_86348976_86352658_86352682_86353476_86353602_86355714
transcript_47719.known	chr6	-	4295	6	FSM	ENSMUSG00000029998.15	ENSMUST00000032065.15	4295	6	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_3	15.4012986465428	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	86374136	86362987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_86366354_86368657_86368811_86369118_86369331_86371390_86371566_86372895_86373103_86373954
transcript_47725.nic	chr6	+	1899	14	NIC	ENSMUSG00000071337.12	novel	4477	13	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_7	51.8881363919042	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAAACTTGTGCAAAGTC	9692	False	NA	NA	False	AATATA	-22	NA	86381211	86407754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86396116_86397305_86397394_86400587_86400654_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
transcript_47727.known	chr6	+	4477	13	FSM	ENSMUSG00000071337.12	ENSMUST00000095753.9	4477	13	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_5	36.3397356744499	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTAAAGTTCTTTTTT	9681	False	NA	NA	False	AATAAA	-15	NA	86381200	86410387	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86396116_86397305_86397394_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
transcript_47730.known	chr6	+	3130	12	FSM	ENSMUSG00000071337.12	ENSMUST00000095752.9	3130	12	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	49.110770393011	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTGTAAACTTCTACA	9775	False	NA	22	True	AATAAA	-24	NA	86381294	86409167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86397305_86397394_86401326_86401403_86401943_86402053_86402431_86402528_86402642_86402728_86403548_86403673_86404654_86404801_86407222
transcript_47733.known	chr6	+	2534	10	FSM	ENSMUSG00000046679.17	ENSMUST00000050497.14	2534	10	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_1	6.73483664919633	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCCATTGATGTCATGA	1453	False	NA	NA	False	AATAAA	-26	NA	86415355	86447370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_86415470_86420708_86420958_86422415_86423251_86424292_86424404_86426742_86426848_86430590_86430696_86434797_86434906_86439562_86439664_86442782_86442946_86446727
transcript_47739.nic	chr6	+	853	7	NIC	ENSMUSG00000071337.12	novel	823	8	NA	NA	-5	-56	combination_of_known_junctions	FALSE	canonical	3	50	junction_6	55.5230182496913	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTGTGTATCCTTCGA	9692	False	NA	NA	False	AGTAAA	-2	NA	86381211	86400775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86396082_86396116_86397305_86397394_86400587
transcript_4774.known	chr10	+	931	4	FSM	ENSMUSG00000003072.16	ENSMUST00000003156.15	931	4	0	0	0	0	multi-exon	FALSE	canonical	3	2420	junction_3	40.5983031938802	2956	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCTGTTTCTAACTGCAC	4445	False	NA	20	True	ATTAAA	-19	NA	79978148	79981652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79978441_79979665_79979820_79981052_79981142_79981256
transcript_47742.known	chr6	+	797	6	FSM	ENSMUSG00000071337.12	ENSMUST00000156762.8	797	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_4	74.1932611495141	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATGTGGGTGTATATTCAT	9785	False	NA	NA	False	NA	NA	NA	86381304	86400845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_86381505_86390785_86390883_86393284_86393384_86395859_86395915_86397305_86397394_86400587
transcript_47744.known	chr6	+	935	1	FSM	ENSMUSG00000071337.12	ENSMUST00000203206.2	935	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGCGACTAGTGGTTGAC	9697	False	NA	NA	False	ATTAAA	-15	NA	86381216	86382151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_86381200_86382200
transcript_47745.known	chr6	+	505	2	FSM	ENSMUSG00000046679.17	ENSMUST00000143430.2	505	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCATTTCTCGGGTCTCA	1787	False	NA	NA	False	ATTAAA	-1	NA	86415689	86416470	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_86415830_86416105
transcript_47746.known	chr6	+	2922	10	FSM	ENSMUSG00000046679.17	ENSMUST00000113698.8	2922	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	11.7263026073655	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTGCCATTGATGTCATGA	1806	False	NA	NA	False	AATAAA	-26	NA	86415708	86447370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_86416241_86420708_86420958_86422415_86423251_86424322_86424404_86426742_86426848_86430590_86430696_86434797_86434906_86439562_86439664_86442782_86442946_86446727
transcript_47747.nnic	chr6	-	999	2	NIC	ENSMUSG00000101655.2	novel	775	2	NA	NA	-242	0	combination_of_known_splicesites	FALSE	canonical	2	10	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTGAAATTTTTTTTTA	6754	False	NA	NA	False	AATAAA	-19	NA	86465451	86460357	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_86460682_86464776
transcript_47748.known	chr6	-	775	2	FSM	ENSMUSG00000101655.2	ENSMUST00000189386.2	775	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTGAAATTTTTTTTTA	6996	False	NA	NA	False	AATAAA	-19	NA	86465209	86460357	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_86460700_86464776
transcript_47749.known	chr6	-	527	2	FSM	ENSMUSG00000101655.2	ENSMUST00000188135.2	527	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGGTGAAATTTTTTTTTA	7019	False	NA	NA	False	AATAAA	-19	NA	86465186	86460357	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_86460682_86464983
transcript_4775.known	chr10	+	781	3	FSM	ENSMUSG00000003072.16	ENSMUST00000105366.2	781	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	1205	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGAGTGTTCTGTTTCTAA	4500	False	NA	14	True	ATTAAA	-13	NA	79978203	79981646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_79978441_79979665_79979820_79981256
transcript_47754.known	chr6	+	594	5	FSM	ENSMUSG00000097048.8	ENSMUST00000204047.3	594	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	30.036436206714	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGTATTTTTAAATTTA	NA	False	NA	9	True	NA	NA	NA	86504300	86541431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_86504416_86504872_86504957_86509174_86509290_86540413_86540520_86541257
transcript_47757.known	chr6	-	1830	1	FSM	ENSMUSG00000051695.7	ENSMUST00000053015.7	1830	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	403	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCGTATTTGAAAGCTGGG	NA	False	NA	-32	True	ATTAAA	-22	NA	86503303	86501473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_86501500_86503300
transcript_47758.known	chr6	+	1547	1	FSM	ENSMUSG00000033508.9	ENSMUST00000043400.9	1547	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATGTGCTCGATAGTTG	NA	False	NA	NA	False	AATAAA	-22	NA	86605145	86606692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_86605100_86606700
transcript_47759.known	chr6	-	822	6	FSM	ENSMUSG00000001158.14	ENSMUST00000131674.2	822	6	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_5	727.529518301491	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTATTTATGACACCCAG	7677	False	NA	31	True	TATAAA	-9	NA	86661473	86652386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837_86659959_86661206
transcript_4776.known	chr10	+	834	8	FSM	ENSMUSG00000045193.14	ENSMUST00000054666.7	834	8	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	141.847863313236	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCGACTCTGTGGCTTGG	6191	False	NA	NA	False	AATAAA	-17	NA	80003673	80008620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80008247_80008347_80008470
transcript_47760.known	chr6	-	885	6	FSM	ENSMUSG00000001158.14	ENSMUST00000001186.11	885	6	0	0	0	0	multi-exon	FALSE	canonical	3	1763	junction_5	100.541732628794	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATAGACTTGTTTTGTTT	7646	False	NA	1	True	ATTAAA	-29	NA	86661504	86652132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_86652563_86653203_86653269_86657888_86657969_86658572_86658686_86659837_86659959_86661428
transcript_47761.known	chr6	-	2949	14	FSM	ENSMUSG00000001157.14	ENSMUST00000001185.14	2949	14	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_7	38.1766371135774	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTGTTTAAAGTGA	NA	False	NA	-18	True	AATAAA	-20	NA	86710365	86668749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_86670034_86674430_86674519_86677493_86677640_86681480_86681557_86684384_86684455_86687496_86687635_86688570_86688662_86691156_86691242_86694367_86694434_86694973_86695087_86698322_86698421_86699550_86699648_86703054_86703179_86709892
transcript_47764.known	chr6	-	2002	13	FSM	ENSMUSG00000029994.18	ENSMUST00000001187.15	2002	13	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_5	17.8737858950537	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTATTCTTTCTCTGAT	4606	False	NA	-2	True	ATTAAA	-18	NA	86770566	86713822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_86714806_86718817_86718941_86720099_86720159_86721606_86721703_86725868_86725963_86728044_86728102_86729134_86729215_86730784_86730876_86731834_86731949_86734800_86734896_86737655_86737744_86742743_86742790_86770490
transcript_4777.known	chr10	+	1321	7	FSM	ENSMUSG00000045193.14	ENSMUST00000105365.9	1321	7	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_6	33.736314097555	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGCTCTGACCATTTCCC	6129	False	NA	NA	False	ATTAAA	-18	NA	80003611	80007489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527_80006599_80006815
transcript_47771.known	chr6	-	1042	1	FSM	ENSMUSG00000100164.2	ENSMUST00000185414.2	1042	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGTTATTTTTCCACCAGC	NA	False	NA	NA	False	AATACA	-24	NA	86826422	86825380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_86825400_86826400
transcript_47773.nnic	chr6	+	1335	9	NNC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	935.045821069748	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATACATTTGCTTCCTC	NA	False	NA	18	True	AATAAA	-24	NA	86986187	87005436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_86986492_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
transcript_47775.known	chr6	+	1195	9	FSM	ENSMUSG00000029993.17	ENSMUST00000120240.8	1195	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1184.03386248029	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGCTTCCTCTCACGAA	NA	False	NA	25	True	AATAAA	-31	NA	86986217	87005443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_86986372_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997825_87000109_87000171_87002467_87002643_87005276
transcript_47777.nnic	chr6	+	1181	9	NNC	ENSMUSG00000029993.17	novel	1195	9	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	3	69	junction_1	921.93755719951	52	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATACATTTGCTTCCTC	NA	False	NA	18	True	AATAAA	-24	NA	86986202	87005436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_86986353_86986731_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
transcript_47784.known	chr6	+	2508	1	FSM	ENSMUSG00000029993.17	ENSMUST00000205018.2	2508	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACCAAA	NA	False	NA	NA	False	NA	NA	NA	86986861	86989369	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_86986900_86989400
transcript_47785.known	chr6	+	950	8	FSM	ENSMUSG00000029993.17	ENSMUST00000117583.8	950	8	0	0	0	0	multi-exon	FALSE	canonical	3	2373	junction_7	253.923417669218	720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATTTGCTTCCTCTCACG	NA	False	NA	23	True	AATAAA	-29	NA	86986817	87005441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_86986942_86989888_86989990_86992547_86992684_86996346_86996414_86997700_86997822_87000109_87000171_87002467_87002643_87005276
transcript_47786.known	chr6	+	6238	19	FSM	ENSMUSG00000029992.15	ENSMUST00000113658.8	6238	19	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_15	18.2452429112053	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGTGACTTTTTCTTTT	9945	False	NA	14	True	AATAAA	-15	NA	87019827	87069179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_87019988_87027902_87028011_87030732_87030841_87031582_87031709_87033125_87033185_87034611_87034747_87036361_87036424_87037502_87037583_87040786_87040893_87043605_87043770_87044665_87044762_87050363_87050462_87053238_87053360_87054064_87054223_87059454_87059570_87062233_87062362_87063285_87063454_87064298_87064461_87065095
transcript_47787.known	chr6	+	2809	1	FSM	ENSMUSG00000029992.15	ENSMUST00000204872.2	2809	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	9949	False	NA	NA	False	NA	NA	NA	87019831	87022640	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_87019800_87022600
transcript_47788.nic	chr6	-	1999	10	NIC	ENSMUSG00000030051.11	novel	1889	11	NA	NA	-11	0	intron_retention	FALSE	canonical	3	41	junction_3	13.2030673577893	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGATCTTCTGCCCTGA	NA	False	NA	-7	True	AATAAA	-20	NA	87649186	87606725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_87607158_87613911_87613959_87618871_87618998_87622995_87623334_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
transcript_4779.nnic	chr10	+	764	7	NIC	ENSMUSG00000045193.14	novel	834	8	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	1	5	junction_5	159.6200349441	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCGACTCTGTGGCTTGG	6190	False	NA	NA	False	AATAAA	-17	NA	80003672	80008620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80008247_80008347_80008470
transcript_47792.nnic	chr6	-	1257	7	NNC	ENSMUSG00000030051.11	novel	3588	6	NA	NA	-11	2	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	23.0072452356499	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTGTCTCTTATTTGA	NA	False	NA	NA	False	CATAAA	-19	NA	87649186	87628070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_87628272_87630689_87630875_87635414_87635548_87635822_87635971_87640666_87640840_87645397_87645470_87648841
transcript_47797.nic	chr6	-	1226	7	ISM	ENSMUSG00000089997.3	ENSMUST00000238521.2	3678	16	4	36432	4	-36432	5prime_fragment	TRUE	canonical	3	8	junction_6	5.95585612840188	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTTGTCCATCGACCCA	NA	False	NA	NA	False	ATTAAA	-17	NA	87699779	87689006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_87689250_87690283_87690357_87691104_87691249_87694858_87695064_87695769_87695958_87698819_87699089_87699675
transcript_47798.nnic	chr6	-	1236	7	NNC	ENSMUSG00000089997.3	novel	3678	16	NA	NA	4	-36432	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	8.4803694888057	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTTGTCCATCGACCCA	NA	False	NA	NA	False	ATTAAA	-17	NA	87699779	87689006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_87689260_87690283_87690357_87691104_87691249_87694858_87695064_87695769_87695958_87698819_87699089_87699675
transcript_47801.known	chr6	-	3588	6	FSM	ENSMUSG00000030051.11	ENSMUST00000203776.2	3588	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	26.5028300375639	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTTTGTGTCTCTTATTT	NA	False	NA	NA	False	CATAAA	-17	NA	87649111	87628072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_87630875_87635414_87635538_87635822_87635971_87640666_87640840_87645397_87645470_87648841
transcript_47807.known	chr6	-	5837	11	FSM	ENSMUSG00000030056.9	ENSMUST00000089497.7	5837	11	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_5	30.4276190327143	159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGCAGATTTGTCAAGGTG	NA	False	NA	NA	False	AATACA	-17	NA	87815780	87791250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_87796186_87796538_87796626_87798489_87798612_87799321_87799445_87802352_87802471_87804565_87804679_87810623_87810667_87811409_87811476_87811924_87811977_87812709_87812733_87815625
transcript_4781.known	chr10	+	912	6	FSM	ENSMUSG00000045193.14	ENSMUST00000140774.2	912	6	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_5	19.6936538001459	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGGCCTCGTGACTAGAC	6237	False	NA	NA	False	NA	NA	NA	80003719	80006971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80003751_80005641_80005751_80005849_80005957_80006035_80006175_80006258_80006341_80006527
transcript_47814.known	chr6	-	952	6	FSM	ENSMUSG00000030057.16	ENSMUST00000113617.3	952	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_4	4719.63282470151	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAATTTCTGCATTTAACTA	NA	False	NA	-47	True	NA	NA	NA	87828042	87820868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87825996_87826092_87827885
transcript_47822.known	chr6	-	2175	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204653.3	2175	5	0	0	0	0	multi-exon	FALSE	canonical	3	7593	junction_2	1716.19673988736	1310	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAACAAAAA	NA	False	NA	NA	False	AGTAAA	-12	NA	87828088	87819596	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822637_87822776_87827885
transcript_47823.known	chr6	-	1614	5	FSM	ENSMUSG00000030057.16	ENSMUST00000204890.3	1614	5	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_3	4411.10218652889	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGATGACAGTTTGGACTT	NA	False	NA	-9	True	ATTAAA	-21	NA	87828012	87820063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_87821139_87822103_87822303_87822446_87822540_87822655_87822776_87827885
transcript_47838.known	chr6	-	911	4	FSM	ENSMUSG00000030057.16	ENSMUST00000204596.2	911	4	0	0	0	0	multi-exon	FALSE	canonical	3	8336	junction_2	1451.03694722851	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCAGTGAGCTTTACTTG	NA	False	NA	-99	True	NA	NA	NA	87828004	87820920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_87821139_87822103_87822540_87822637_87822776_87827885
transcript_47839.known	chr6	-	915	4	FSM	ENSMUSG00000030057.16	ENSMUST00000141961.4	915	4	0	0	0	0	multi-exon	FALSE	canonical	3	2802	junction_2	4016.05082415826	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAGTGTAAAAGGAGGAAAGG	NA	False	NA	-79	True	NA	NA	NA	87828009	87820900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_87821139_87822103_87822540_87822658_87822776_87827885
transcript_47844.known	chr6	+	4140	24	FSM	ENSMUSG00000030058.18	ENSMUST00000113607.10	4140	24	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	198.307183759023	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGTGTCAGCCTCCTTTTG	NA	False	NA	NA	False	AATAAA	-15	NA	87864795	87890577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171_87867252_87868930_87869007_87869187_87869281_87869614_87869702_87870777_87870936_87871022_87871157_87872675_87872744_87872908_87873098_87874934_87875031_87879179_87879424_87880466_87880543_87881069_87881174_87881797_87881924_87882180_87882250_87884354_87884498_87884791_87884964_87885517_87885616_87886645_87886785_87887021_87887121_87889153
transcript_4785.nic	chr10	+	1739	3	NIC	ENSMUSG00000045193.14	novel	1321	7	NA	NA	-1	0	intron_retention	FALSE	canonical	3	335	junction_2	30	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGCTCTGACCATTTCCC	6190	False	NA	NA	False	ATTAAA	-18	NA	80003672	80007489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_80003751_80005641_80006341_80006527
transcript_47850.nnic	chr6	+	1531	7	NNC	ENSMUSG00000030060.15	novel	1572	6	NA	NA	-233	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	526.39858683532	127	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGGCTCTCACCCAGTA	2731	False	NA	44	True	AATAAA	-30	NA	87890683	87913611	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_87890828_87891472_87891678_87894820_87894965_87898507_87898634_87902613_87902793_87910223_87910417_87913071
transcript_47852.known	chr6	+	1464	7	FSM	ENSMUSG00000030060.15	ENSMUST00000032141.14	1464	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	428.702078630629	841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGGCTCTCACCCAGTA	2964	False	NA	44	True	AATAAA	-30	NA	87890916	87913611	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_87890994_87891472_87891678_87894820_87894965_87898507_87898634_87902613_87902793_87910223_87910417_87913071
transcript_47855.known	chr6	+	921	5	FSM	ENSMUSG00000030058.18	ENSMUST00000049966.6	921	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	373.284408996679	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTGCCTCTTACCCAGTT	NA	False	NA	NA	False	AAAACA	-14	NA	87864909	87867741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_87865055_87866052_87866106_87866638_87866720_87866937_87867010_87867171
transcript_47857.nic	chr6	-	2236	7	NIC	ENSMUSG00000079477.10	novel	1657	8	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	112	junction_6	799.58419749823	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTCTTTTTCT	NA	False	NA	NA	False	AATAAA	-22	NA	88022242	87976087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_87992613_87992701_88022054
transcript_4786.known	chr10	+	678	3	FSM	ENSMUSG00000035595.7	ENSMUST00000041882.7	678	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	13	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGTGTCCTGGTGAAGT	NA	False	NA	43	True	AATGAA	-45	NA	80008777	80010980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80009009_80010042_80010160_80010650
transcript_47861.known	chr6	-	2159	6	FSM	ENSMUSG00000079477.10	ENSMUST00000113600.10	2159	6	0	0	0	0	multi-exon	FALSE	canonical	3	1571	junction_1	157.281403859452	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGTCTGTCTTTTTCT	NA	False	NA	NA	False	AATAAA	-22	NA	88022252	87976087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_87977513_87981152_87981282_87981974_87982194_87989288_87989416_87990619_87990681_88022054
transcript_4787.nic	chr10	+	1751	3	ISM	ENSMUSG00000003070.7	ENSMUST00000003154.7	2131	4	7241	0	7241	0	3prime_fragment	FALSE	canonical	3	63	junction_1	2	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTGGGCCTCTCTGTTACA	2901	False	NA	16	True	AATAAA	-17	NA	80022556	80025844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_80022900_80024275_80024342_80024502
transcript_47873.known	chr6	+	3633	10	FSM	ENSMUSG00000030062.8	ENSMUST00000032143.8	3633	10	0	0	0	0	multi-exon	FALSE	canonical	3	2268	junction_5	110.706262438987	241	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATGTATGCTTGTTAGA	537	False	NA	NA	False	AATAAA	-15	NA	88061463	88082286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_88061777_88065331_88065397_88066970_88067278_88070767_88070978_88072504_88072698_88076255_88076356_88077610_88077750_88077843_88077964_88078956_88079203_88080346
transcript_47878.known	chr6	+	3571	6	FSM	ENSMUSG00000015053.15	ENSMUST00000015197.9	3571	6	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_4	9.31665175908169	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCTGTCGCCTGTTGAGT	NA	False	NA	12	True	AATAAA	-13	NA	88175315	88184012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_88175864_88176498_88176772_88177200_88177843_88179400_88179547_88181564_88181691_88182176
transcript_47882.known	chr6	-	2679	7	FSM	ENSMUSG00000033216.10	ENSMUST00000165242.4	2679	7	0	0	0	0	multi-exon	TRUE	canonical	3	371	junction_3	47.1643108952333	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTGTGATCAAATGACTT	NA	False	NA	-8	True	ATTAAA	-16	NA	88423521	88234315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_88235374_88258530_88258688_88274558_88275219_88332464_88332630_88335527_88335625_88353185_88353394_88423187
transcript_47883.nic	chr6	-	1532	6	NIC	ENSMUSG00000033216.10	novel	2679	7	NA	NA	-49	3	combination_of_known_junctions	FALSE	canonical	3	78	junction_2	158.228189650264	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTAGTGTGCCCATAGTCTG	NA	False	NA	-14	True	AATAAA	-15	NA	88423570	88234851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_88235374_88258530_88258688_88332464_88332630_88335527_88335625_88353185_88353394_88423187
transcript_47886.nnic	chr6	-	1023	5	NNC	ENSMUSG00000033216.10	novel	2679	7	NA	NA	0	-14467	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	199.232747057305	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCCAAGCCCCAGTATGAA	NA	False	NA	NA	False	AAAAAG	-3	NA	88423509	88289554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_88289786_88332464_88332630_88335527_88335625_88353185_88353394_88423187
transcript_47887.nnic	chr6	-	1028	5	NNC	ENSMUSG00000033216.10	novel	2679	7	NA	NA	0	-14467	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	202.243664919324	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGCCAAGCCCCAGTATGAA	NA	False	NA	NA	False	AAAAAG	-3	NA	88423509	88289554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_88289791_88332464_88332630_88335527_88335625_88353185_88353394_88423187
transcript_47888.known	chr6	+	1675	11	FSM	ENSMUSG00000030079.16	ENSMUST00000032165.16	1675	11	0	0	0	0	multi-exon	FALSE	canonical	3	1160	junction_1	83.5499850388975	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGGTTTTTATATTTTAC	NA	False	NA	31	True	AATAAA	-31	NA	88442390	88474554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_88442651_88444547_88444635_88450058_88450192_88456108_88456261_88459099_88459190_88459944_88460095_88461389_88461454_88462694_88462894_88468497_88468601_88473389_88473482_88474209
transcript_4789.known	chr10	+	2640	14	FSM	ENSMUSG00000020156.17	ENSMUST00000020365.15	2640	14	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	105.419758317817	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTCATAGTCATTGCACA	8218	False	NA	19	True	TATAAA	-17	NA	80062267	80079737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80062539_80064155_80064273_80064828_80064915_80065890_80065962_80068071_80068882_80070056_80070162_80071944_80072016_80074148_80074226_80074693_80074755_80075753_80075830_80076225_80076277_80076597_80077035_80077630_80077720_80079419
transcript_47891.known	chr6	-	3172	12	FSM	ENSMUSG00000030082.15	ENSMUST00000032168.7	3172	12	0	0	0	0	multi-exon	FALSE	canonical	3	923	junction_2	46.8136802778528	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCAGAAAGCTTGTTGT	9095	False	NA	5	True	AATAAA	-39	NA	88495887	88480560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_88482276_88483126_88483204_88483722_88483915_88484153_88484352_88485543_88485705_88489083_88489238_88489477_88489588_88491294_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
transcript_47892.known	chr6	-	935	5	FSM	ENSMUSG00000030082.15	ENSMUST00000130918.8	935	5	0	0	0	0	multi-exon	FALSE	canonical	3	957	junction_4	50.4548065103811	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTAACTCGGTGGGAAAG	9227	False	NA	NA	False	NA	NA	NA	88495755	88490792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_88491427_88492325_88492405_88492485_88492552_88495352_88495421_88495667
transcript_47893.known	chr6	+	3676	8	FSM	ENSMUSG00000033174.18	ENSMUST00000113585.9	3676	8	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_6	2.55550625999976	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGTGTCTGCGTGTCTG	NA	False	NA	5	True	AATAAA	-20	NA	88701393	88805342	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_88701554_88702682_88702828_88741577_88741685_88784992_88785130_88786317_88786429_88795555_88795646_88800172_88800389_88802632
transcript_47895.known	chr6	+	3867	8	FSM	ENSMUSG00000033174.18	ENSMUST00000089449.5	3867	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	4.18939379960434	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCCTGTGTCTGCGTGTCTG	NA	False	NA	5	True	AATAAA	-20	NA	88701809	88805342	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_88702161_88702682_88702828_88741577_88741685_88784992_88785130_88786317_88786429_88795555_88795646_88800172_88800389_88802632
transcript_47898.known	chr6	-	1774	12	FSM	ENSMUSG00000030083.12	ENSMUST00000203137.3	1774	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	157.288543608278	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGGGGACCTGAGCCTG	6970	False	NA	-14	True	AATAAA	-11	NA	88818876	88812905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_88813435_88813506_88813708_88815099_88815248_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817854_88817883_88818750
transcript_479.known	chr1	-	941	3	FSM	ENSMUSG00000048874.16	ENSMUST00000188780.2	941	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	46.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCACTTCTCTCAGAGACTA	NA	False	NA	NA	False	NA	NA	NA	30912975	30870285	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_30870641_30902067_30902337_30912658
transcript_47900.known	chr6	-	1845	12	FSM	ENSMUSG00000030083.12	ENSMUST00000032169.8	1845	12	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_10	111.135015794021	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCCTGTTGTTGGGGT	6964	False	NA	-4	True	AATAAA	-21	NA	88818882	88812895	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312_88816473_88816608_88816754_88817691_88817748_88817819_88817883_88818750
transcript_47908.nic	chr6	-	1591	8	ISM	ENSMUSG00000030083.12	ENSMUST00000032169.8	1845	12	2268	0	-43	0	intron_retention	FALSE	canonical	3	333	junction_3	29.2665442484229	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCCTGTTGTTGGGGT	9232	False	NA	-4	True	AATAAA	-21	NA	88816614	88812895	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_88813435_88813506_88813708_88815099_88815268_88815361_88815461_88815619_88815739_88815826_88815944_88816166_88816213_88816312
transcript_4791.known	chr10	+	983	9	FSM	ENSMUSG00000020153.15	ENSMUST00000105364.8	983	9	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	752.129476885463	1550	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTGTGTTCTGTGTGGAC	9361	False	NA	24	True	AATAAA	-15	NA	80084954	80092627	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80085039_80085145_80085326_80088230_80088268_80088907_80088992_80089493_80089618_80090673_80090854_80090923_80090971_80091757_80091847_80092469
transcript_47918.known	chr6	-	3371	16	FSM	ENSMUSG00000002870.9	ENSMUST00000058011.8	3371	16	0	0	0	0	multi-exon	FALSE	canonical	1	1040	junction_8	575.928791894739	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCTTTGGTTCTGGTTTAA	NA	False	NA	-3	True	AATAAA	-16	NA	88875762	88860455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_88861093_88861357_88861514_88861663_88861847_88862825_88863078_88863942_88864056_88864482_88864610_88864701_88864953_88865153_88865248_88865995_88866188_88866769_88866905_88868654_88868863_88868957_88869178_88869926_88870188_88870319_88870496_88874268_88874499_88875626
transcript_47922.known	chr6	+	1738	12	FSM	ENSMUSG00000002871.15	ENSMUST00000204765.3	1738	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	17.59319928714	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGTGTGAGCTGATGCCT	NA	False	NA	12	True	AATAAA	-14	NA	88879314	88889213	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_88879513_88882930_88883061_88884922_88885055_88885165_88885299_88886271_88886359_88886489_88886563_88886662_88886743_88887132_88887244_88887322_88887384_88887529_88887633_88887778_88887860_88888664
transcript_47924.nnic	chr6	+	1806	12	NNC	ENSMUSG00000002871.15	novel	1820	12	NA	NA	22	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	33.0236579359567	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGTGTGAGCTGATGCCT	NA	False	NA	12	True	AATAAA	-14	NA	88879254	88889213	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_88879513_88882922_88883061_88884922_88885055_88885165_88885299_88886271_88886359_88886489_88886563_88886662_88886743_88887132_88887244_88887322_88887384_88887529_88887633_88887778_88887860_88888664
transcript_47928.nnic	chr6	+	1885	11	NNC	ENSMUSG00000002871.15	novel	1820	12	NA	NA	22	0	intron_retention	FALSE	non_canonical	0	0	junction_1	34.5405558727708	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGTGTGAGCTGATGCCT	NA	False	NA	12	True	AATAAA	-14	NA	88879254	88889213	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_88879513_88882922_88883061_88884922_88885055_88885165_88885299_88886271_88886359_88886489_88886563_88886662_88886743_88887132_88887384_88887529_88887633_88887778_88887860_88888664
transcript_4793.known	chr10	-	988	6	FSM	ENSMUSG00000020150.14	ENSMUST00000105363.8	988	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	3.91918358845308	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTTGGTTGGCAGTGAG	9249	False	NA	NA	False	AATAAA	-18	NA	80096846	80093984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80094292_80094773_80094885_80095010_80095079_80095434_80095499_80095601_80095748_80096554
transcript_47933.known	chr6	-	652	2	FSM	ENSMUSG00000090013.2	ENSMUST00000159767.2	652	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATTTTTTCAACTTTATG	NA	False	NA	NA	False	NA	NA	NA	89163007	89161653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_89162143_89162844
transcript_47934.known	chr6	-	1121	8	FSM	ENSMUSG00000030086.17	ENSMUST00000032172.14	1121	8	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_4	25.4486277245203	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGCACCCAGTCACTTCTG	NA	False	NA	-5	True	AATAAA	-32	NA	89572634	89360132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_89360331_89361585_89361722_89396729_89396801_89444371_89444456_89544568_89544714_89546324_89546395_89551349_89551573_89572440
transcript_47936.known	chr6	-	1042	7	FSM	ENSMUSG00000030086.17	ENSMUST00000113550.6	1042	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	87.7648373021147	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCAGTCACTTCTGTTGAC	NA	False	NA	0	True	AATAAA	-37	NA	89572634	89360127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_89360331_89361585_89361722_89396729_89396801_89544568_89544714_89546324_89546395_89551349_89551573_89572440
transcript_47937.known	chr6	+	2836	16	FSM	ENSMUSG00000000811.15	ENSMUST00000000828.14	2836	16	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_10	10.7467824642231	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTTTTTTTTTCTGAA	NA	False	NA	91	True	ATTAAA	-13	NA	89620969	89652511	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_89621385_89627507_89627569_89628480_89628591_89631035_89631141_89631330_89631404_89633009_89633130_89638440_89638584_89640058_89640175_89641359_89641586_89642681_89642775_89646286_89646364_89646799_89646957_89649152_89649261_89649949_89650046_89651042_89651178_89651710
transcript_47938.known	chr6	+	2240	2	FSM	ENSMUSG00000030087.12	ENSMUST00000203607.2	2240	2	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTACCATTTTTTGGCCCT	NA	False	NA	25	True	AATAAA	-21	NA	90443381	90452217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_90444506_90451101
transcript_47939.known	chr6	+	3052	23	FSM	ENSMUSG00000030088.16	ENSMUST00000032175.11	3052	23	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	30.2788691558217	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTTTGTGTCACTGCTCTG	NA	False	NA	13	True	AATAAA	-23	NA	90527786	90576151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_90527880_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
transcript_4794.nnic	chr10	-	799	6	NNC	ENSMUSG00000020150.14	novel	988	6	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_5	11.4821600755259	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGTTGGTTGGCAGTGAG	9240	False	NA	NA	False	AATAAA	-18	NA	80096855	80093984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_80094292_80094773_80094885_80095010_80095079_80095434_80095499_80095601_80095748_80096752
transcript_47940.known	chr6	+	4175	23	FSM	ENSMUSG00000030088.16	ENSMUST00000130418.8	4175	23	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	39.2549675753126	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTTTTTGTCTCTGTGTT	NA	False	NA	NA	False	TTTAAA	-17	NA	90527770	90577185	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_90527953_90534183_90534334_90536223_90536459_90536807_90536974_90539600_90539703_90540346_90540437_90541327_90541466_90543620_90543747_90546454_90546547_90546774_90546923_90547765_90547886_90548848_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
transcript_47941.nic	chr6	+	1701	12	ISM	ENSMUSG00000030088.16	ENSMUST00000204796.3	3025	23	20901	0	4043	0	3prime_fragment	FALSE	canonical	3	182	junction_2	18.1799999090818	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGCCTACACTTTGTGTC	7920	False	NA	4	True	AATAAA	-14	NA	90548730	90576142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_90548977_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
transcript_47942.nnic	chr6	+	1598	12	NNC	ENSMUSG00000030088.16	novel	3025	23	NA	NA	4045	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	63.5044086450332	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCGCCTACACTTTGTGTC	7922	False	NA	4	True	AATAAA	-14	NA	90548732	90576142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_90548876_90553609_90553761_90554766_90554838_90557457_90557564_90560154_90560243_90566318_90566413_90567719_90567820_90568782_90568882_90571464_90571631_90573849_90573956_90575167_90575368_90575868
transcript_47943.nnic	chr6	+	652	2	NNC	ENSMUSG00000108111.2	novel	661	2	NA	NA	32364	7	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	0	18	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGTGTGTAATTATACAA	9318	False	NA	NA	False	AATACA	-18	NA	90495738	90496469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_90495862_90495940
transcript_47945.known	chr6	+	2653	10	FSM	ENSMUSG00000034245.11	ENSMUST00000041736.11	2653	10	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_9	4.60541817245838	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGGGCAGCTGCCCAAGAT	NA	False	NA	29	True	AATAAA	-31	NA	91133646	91151674	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_91133830_91134378_91134528_91136142_91136244_91142542_91142660_91143224_91143268_91144785_91144863_91145790_91145854_91146376_91146474_91149146_91149326_91150030
transcript_47946.known	chr6	+	486	2	FSM	ENSMUSG00000100680.2	ENSMUST00000186472.2	486	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGTCTACACTCATTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	91417968	91418737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_91418141_91418423
transcript_47949.known	chr6	-	3472	3	FSM	ENSMUSG00000034203.9	ENSMUST00000040835.9	3472	3	0	0	0	0	multi-exon	FALSE	canonical	3	1002	junction_1	28.5	853	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTATGCAGTACATGATCT	NA	False	NA	NA	False	NA	NA	NA	91450528	91439153	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_91442296_91444664_91444764_91450297
transcript_4795.known	chr10	-	979	6	FSM	ENSMUSG00000020150.14	ENSMUST00000020359.7	979	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	12.2376468326227	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACAAGAAGACTAGTGGGTT	9293	False	NA	NA	False	AATAAA	-5	NA	80096802	80093997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80094292_80094773_80094933_80095010_80095079_80095434_80095499_80095601_80095748_80096554
transcript_47950.known	chr6	-	1854	1	FSM	ENSMUSG00000034203.9	ENSMUST00000205802.2	1854	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGGAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91450431	91448577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_91448600_91450400
transcript_47951.known	chr6	+	2903	12	FSM	ENSMUSG00000030095.11	ENSMUST00000032183.6	2903	12	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_7	13.7209497779825	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTCGTTTGCTGTTGCA	9688	False	NA	NA	False	AATAAA	-30	NA	91450684	91465445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_91450881_91454226_91454377_91455187_91455323_91455687_91455783_91456554_91456605_91456862_91456933_91457631_91457703_91458913_91459036_91459235_91459311_91459642_91459745_91462298_91462417_91463726
transcript_47955.known	chr6	-	3634	16	FSM	ENSMUSG00000030094.9	ENSMUST00000032182.5	3634	16	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_2	18.0017283120878	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTGGCTGCAAATTTATT	369	False	NA	0	True	AATAAA	-16	NA	91492870	91466286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_91467249_91468202_91468293_91469252_91469347_91469823_91469994_91470086_91470222_91473069_91473152_91475011_91475173_91476246_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
transcript_47956.nic	chr6	-	2423	10	ISM	ENSMUSG00000030094.9	ENSMUST00000150279.3	4347	13	-94	5436	-1	-5436	5prime_fragment	FALSE	canonical	3	87	junction_8	18.5099239315189	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGTAGAAGTGTTCCTCG	368	False	NA	NA	False	AATAAA	-22	NA	91492871	91474690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_91475173_91476246_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
transcript_47957.nic	chr6	-	2078	9	ISM	ENSMUSG00000030094.9	ENSMUST00000150279.3	4347	13	-94	6855	-1	-6855	5prime_fragment	FALSE	canonical	3	87	junction_7	19.6273883896967	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGAAGACATACTTTTCTA	368	False	NA	NA	False	AATATA	-14	NA	91492871	91476109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_91477120_91477903_91477994_91480982_91481104_91481552_91481711_91482372_91482458_91483820_91483942_91485470_91485578_91487438_91487641_91492687
transcript_47960.known	chr6	+	618	4	FSM	ENSMUSG00000034192.6	ENSMUST00000206947.2	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	1484	junction_1	387.955610290089	1621	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTACTTTTTTTTTTAATG	NA	False	NA	42	True	ATTAAA	-18	NA	91493029	91499602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_91493061_91494029_91494141_91496530_91496627_91499222
transcript_47965.known	chr6	+	504	2	FSM	ENSMUSG00000034192.6	ENSMUST00000123569.3	504	2	0	0	0	0	multi-exon	FALSE	canonical	3	1484	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGGGTTTAGACAAGGTC	NA	False	NA	NA	False	AATAAA	-12	NA	91493028	91494501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_91493061_91494029
transcript_47966.known	chr6	+	6186	15	FSM	ENSMUSG00000030096.9	ENSMUST00000032185.9	6186	15	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_10	29.4144383538675	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCTGGTGTGTTTCGGAGT	NA	False	NA	31	True	AATAAA	-25	NA	91661033	91736047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_91661290_91675969_91676014_91700262_91700503_91701822_91701958_91702992_91703228_91712071_91712205_91716857_91716993_91717929_91718034_91718158_91718284_91721897_91722011_91725313_91725452_91726707_91726811_91727253_91727355_91729267_91729439_91731894
transcript_47970.known	chr6	+	1553	5	FSM	ENSMUSG00000030096.9	ENSMUST00000206835.2	1553	5	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_1	28.2167946443249	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATAATCTCCTTGTGTTAA	NA	False	NA	NA	False	AATAGA	-20	NA	91661075	91703912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_91661290_91675969_91676014_91700262_91700503_91701822_91701958_91702992
transcript_47975.known	chr6	+	1752	11	FSM	ENSMUSG00000034083.17	ENSMUST00000037783.7	1752	11	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_7	17.7876361554873	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGAGGAACTTGTTTCTT	NA	False	NA	12	True	TATAAA	-16	NA	91855033	91876824	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_91855168_91857237_91857343_91858227_91858329_91862328_91862388_91865050_91865232_91867774_91867871_91869836_91869980_91870386_91870482_91872194_91872328_91875127_91875281_91876272
transcript_47978.known	chr6	+	3980	3	FSM	ENSMUSG00000034083.17	ENSMUST00000138868.8	3980	3	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_1	5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	91855033	91861968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_91855168_91857237_91857343_91858227
transcript_47981.known	chr6	-	6073	4	FSM	ENSMUSG00000014551.9	ENSMUST00000140438.2	6073	4	0	0	0	0	multi-exon	FALSE	canonical	3	811	junction_2	13.9124245031395	566	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGCTTTAA	NA	False	NA	NA	False	AATACA	-6	NA	92161014	92146505	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_92152190_92152689_92152778_92155690_92155798_92160820
transcript_47983.known	chr6	-	5334	12	FSM	ENSMUSG00000014550.15	ENSMUST00000014694.11	5334	12	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_10	18.3307536376882	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTGTGTGCTTAAAACGT	NA	False	NA	1	True	ATTAAA	-24	NA	92191906	92163692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_92167440_92168229_92168335_92170109_92170213_92170924_92171012_92175164_92175236_92176674_92176917_92178452_92178615_92178712_92178759_92179550_92179652_92184025_92184167_92188568_92188883_92191691
transcript_47985.known	chr6	-	1384	3	FSM	ENSMUSG00000005892.5	ENSMUST00000006046.5	1384	3	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	3.5	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGCTTTGCTCTTCTG	NA	False	NA	-13	True	AATAAA	-15	NA	92221631	92219041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_92220107_92220652_92220869_92221528
transcript_47986.nnic	chr6	+	862	5	NNC	ENSMUSG00000048636.8	novel	2239	5	NA	NA	-55	-4748	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	1.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTGATTTTTTTTCCTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	92793403	92815698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_92793642_92804897_92805085_92808917_92809046_92811419_92811468_92815437
transcript_47987.known	chr6	+	1922	10	FSM	ENSMUSG00000045100.12	ENSMUST00000061118.11	1922	10	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	7.6610285226392	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATTGCCTCTCAGAAGCAG	NA	False	NA	NA	False	AATAAA	-36	NA	94477311	94581653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701_94512750_94553314_94553360_94569392_94569463_94575360_94575426_94576159_94576234_94580532
transcript_47991.nic	chr6	+	1081	9	NIC	ENSMUSG00000045100.12	novel	1922	10	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_5	12.2983738762488	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGCTTTTTATTAGCAT	NA	False	NA	NA	False	AATAAA	-32	NA	94477297	94580843	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_94477439_94484494_94484652_94487732_94487843_94511124_94511230_94512701_94512750_94569392_94569463_94575360_94575426_94576159_94576234_94580532
transcript_47997.known	chr6	+	4869	4	FSM	ENSMUSG00000030031.15	ENSMUST00000032107.10	4869	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	4.18993502999218	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACTAGTTAGTATTAACA	NA	False	NA	90	True	ATTAAA	-23	NA	95094720	95106771	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_95094956_95095503_95095715_95098719_95099829_95103457
transcript_48.known	ERCC-00144	+	521	1	FSM	ERCC-00144A	DQ854995	521	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00144_+_0_500
transcript_4800.known	chr10	+	1994	12	FSM	ENSMUSG00000069565.13	ENSMUST00000092305.6	1994	12	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_4	263.9061002555	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGTGCTGTCTGCTTGT	NA	False	NA	12	True	AATAAA	-21	NA	80100907	80124242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113405_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120384_80121083_80121261_80123372
transcript_48005.known	chr6	-	3367	11	FSM	ENSMUSG00000061838.8	ENSMUST00000204224.3	3367	11	0	0	0	0	multi-exon	FALSE	canonical	3	467	junction_5	91.8564096838103	443	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTCAGTAGTGTGGGGTG	NA	False	NA	-7	True	ATTAAA	-17	NA	95695781	95449989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_95452146_95474577_95474699_95543364_95543508_95546552_95546715_95556119_95556217_95563920_95564011_95565918_95566072_95571640_95571732_95572634_95572735_95632438_95632581_95695669
transcript_48009.known	chr6	-	2190	6	FSM	ENSMUSG00000046500.9	ENSMUST00000089295.6	2190	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	2.56124969497314	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGTGATTATTTATTT	NA	False	NA	-28	True	AGTAAA	-26	NA	97037374	96808163	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_96809534_96820711_96820837_96840720_96840877_96991332_96991449_96996875_96997016_97037091
transcript_48011.known	chr6	-	4424	18	FSM	ENSMUSG00000035245.13	ENSMUST00000054344.11	4424	18	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_9	6.4238957016875	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTGAACATCTTCAGGAT	NA	False	NA	-6	True	AATAAA	-22	NA	97126143	97086984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_97089168_97089641_97089745_97090803_97090924_97092961_97093024_97095841_97095911_97096923_97097011_97097104_97097177_97097672_97097766_97102480_97102585_97108312_97108420_97111239_97111345_97112136_97112232_97119786_97119896_97120900_97121002_97122221_97122446_97124355_97124413_97124837_97125220_97125792
transcript_48012.known	chr6	-	5732	17	FSM	ENSMUSG00000030059.16	ENSMUST00000095664.6	5732	17	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	13.1808336231059	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATCCAGTAAGTGGCAGAAG	7468	False	NA	NA	False	AATAAA	-13	NA	97156083	97129957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_97132459_97133804_97133931_97135006_97135160_97135421_97135524_97137203_97137297_97137491_97137562_97138328_97138522_97140479_97140637_97141009_97141103_97144209_97144367_97145048_97145216_97145708_97145852_97147286_97147393_97149173_97149301_97150260_97150365_97152730_97153930_97155842
transcript_48017.known	chr6	-	2561	18	FSM	ENSMUSG00000030061.17	ENSMUST00000204056.2	2561	18	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_16	168.014169776465	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTTATAGTCAAGTCTC	NA	False	NA	-18	True	AGTAAA	-17	NA	97182520	97160778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182063_97182309_97182493
transcript_48018.known	chr6	-	2257	18	FSM	ENSMUSG00000030061.17	ENSMUST00000089287.7	2257	18	0	0	0	0	multi-exon	FALSE	canonical	3	461	junction_17	79.0590861340176	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAACTTAAAGTATATCAAT	NA	False	NA	-7	True	AATAAA	-24	NA	97182608	97160967	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182266_97182309_97182493
transcript_48025.known	chr6	-	2465	17	FSM	ENSMUSG00000030061.17	ENSMUST00000164744.8	2465	17	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_16	154.413292315623	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTAATTGCAATTTTTTAT	NA	False	NA	NA	False	NA	NA	NA	97182521	97160630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_97161827_97162301_97162357_97162443_97162508_97162610_97162712_97163029_97163112_97163197_97163235_97163623_97163678_97166489_97166604_97166714_97166818_97168053_97168210_97168486_97168552_97169701_97169746_97173797_97173879_97176199_97176283_97178877_97178959_97180434_97180556_97182493
transcript_4803.nnic	chr10	+	1494	11	NNC	ENSMUSG00000069565.13	novel	2081	12	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_10	315.460314461265	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGTGCTGTCTGCTTGT	NA	False	NA	12	True	AATAAA	-21	NA	80100846	80124242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_80101013_80109840_80109882_80110281_80110449_80110637_80110704_80113408_80113517_80114066_80114116_80116762_80116846_80118857_80119012_80120063_80120094_80120242_80120273_80123642
transcript_48038.known	chr6	+	1442	3	FSM	ENSMUSG00000035199.7	ENSMUST00000044681.7	1442	3	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_2	50	215	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGTCTATATGGCACAT	8448	False	NA	10	True	AATAAA	-21	NA	97187649	97210276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_97187958_97206497_97206716_97209360
transcript_48042.known	chr6	-	3996	13	FSM	ENSMUSG00000030064.17	ENSMUST00000143698.8	3996	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_12	16.9377946878833	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTTTGTCATTTGTATC	NA	False	NA	NA	False	CATAAA	-16	NA	97289341	97264042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_97265442_97269323_97269457_97272536_97273349_97274995_97275116_97277169_97277318_97279249_97279307_97282107_97282337_97283439_97283560_97283639_97283774_97284987_97285130_97285574_97285714_97287623_97287701_97288855
transcript_48044.known	chr6	-	519	1	FSM	ENSMUSG00000084319.4	ENSMUST00000121046.2	519	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATTGGATCTATCACCTG	NA	False	NA	NA	False	NA	NA	NA	99855295	99854776	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_99854800_99855300
transcript_48045.known	chr6	-	4503	5	FSM	ENSMUSG00000072872.4	ENSMUST00000101118.4	4503	5	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_4	17.7552809045647	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGGAGATGATTATTTTT	NA	False	NA	NA	False	AATAAA	-14	NA	100264446	100205525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_100209387_100209827_100209927_100210023_100210201_100263443_100263570_100264206
transcript_48047.known	chr6	-	1990	11	FSM	ENSMUSG00000035378.18	ENSMUST00000170667.8	1990	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	64.1530201939083	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGGTGTAAATAATTAGA	NA	False	NA	-2	True	AATAAA	-18	NA	100648118	100550042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_100550750_100588696_100588818_100607843_100607968_100609199_100609254_100613928_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
transcript_48048.nnic	chr6	-	1978	11	NNC	ENSMUSG00000035378.18	novel	1990	11	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	80.3295711428861	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAGGTGTAAATAATTAGA	NA	False	NA	-2	True	AATAAA	-18	NA	100648133	100550042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_100550750_100588696_100588818_100607843_100607968_100609199_100609254_100613955_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
transcript_48049.nnic	chr6	-	1599	11	NNC	ENSMUSG00000035378.18	novel	6816	11	NA	NA	-15	-29229	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	83.0821280420765	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAACTTGACTTGCGCAA	NA	False	NA	NA	False	AATAAA	-14	NA	100648133	100579272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_100579574_100588696_100588818_100607843_100607968_100609199_100609254_100613928_100614084_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
transcript_48056.known	chr6	-	1638	8	FSM	ENSMUSG00000035378.18	ENSMUST00000089245.7	1638	8	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_2	71.8828411871905	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATAAGGTGTAAATAATTAG	NA	False	NA	-3	True	AATAAA	-17	NA	100648100	100550043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_100550750_100588696_100588818_100625124_100625253_100632219_100632333_100641387_100641549_100642266_100642390_100646660_100646726_100647879
transcript_48058.known	chr6	+	4874	9	FSM	ENSMUSG00000052144.9	ENSMUST00000063854.7	4874	9	0	0	0	0	multi-exon	FALSE	canonical	3	518	junction_7	39.1144155011934	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACGTGTGGAATTACTTT	9660	False	NA	12	True	AATAAA	-21	NA	100810582	100846895	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_100810879_100811677_100811760_100829445_100829617_100838370_100838465_100840083_100840122_100841639_100841715_100842034_100842179_100842748_100843045_100843217
transcript_48059.known	chr6	+	598	1	FSM	ENSMUSG00000052144.9	ENSMUST00000203067.2	598	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGGAAGAGCTGTGAGTA	3931	False	NA	NA	False	AATAAA	-30	NA	100843086	100843684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_100843100_100843700
transcript_48060.known	chr6	-	2084	11	FSM	ENSMUSG00000005362.15	ENSMUST00000113239.10	2084	11	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_5	22.0871003076456	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGCTCCTTAATGTCATT	NA	False	NA	-33	True	AATAAA	-17	NA	106777035	106757161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_106758072_106758663_106758796_106759423_106759489_106759871_106759988_106760385_106760471_106761377_106761441_106767792_106767953_106771148_106771299_106771955_106772159_106772842_106772959_106776951
transcript_48065.known	chr6	+	1398	9	FSM	ENSMUSG00000013736.17	ENSMUST00000113248.4	1398	9	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	232.818296907696	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCTAAAACTAAATGAAGAGT	NA	False	NA	NA	False	NA	NA	NA	106746126	106758615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_106746153_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
transcript_48067.known	chr6	+	2283	9	FSM	ENSMUSG00000013736.17	ENSMUST00000057578.16	2283	9	0	0	0	0	multi-exon	FALSE	canonical	3	574	junction_1	132.149477392081	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGTCGTTATTTCTGT	NA	False	NA	12	True	AATAAA	-21	NA	106746126	106759435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_106746218_106746790_106746965_106750245_106750440_106751366_106751506_106753079_106753207_106754878_106755073_106755748_106756003_106756146_106756429_106758607
transcript_48075.known	chr6	-	2784	5	FSM	ENSMUSG00000005362.15	ENSMUST00000147087.2	2784	5	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_4	25.0099980007996	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGTACCCAGTGACTTG	NA	False	NA	NA	False	AATAAA	-27	NA	106777022	106765708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_106767953_106771148_106771299_106771955_106772159_106772842_106772959_106776951
transcript_48076.known	chr6	+	1612	2	FSM	ENSMUSG00000034639.8	ENSMUST00000049246.7	1612	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACTCCCGATCTTATTA	NA	False	NA	6	True	AATAAA	-16	NA	108042005	108054083	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_108042201_108052666
transcript_48077.known	chr6	+	1748	3	FSM	ENSMUSG00000034639.8	ENSMUST00000138140.3	1748	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGACTCCCGATCTTATTA	NA	False	NA	6	True	AATAAA	-16	NA	108042022	108054083	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_108042201_108049927_108050081_108052666
transcript_48078.known	chr6	-	390	1	FSM	ENSMUSG00000091845.2	ENSMUST00000025040.6	390	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	899	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTGTATTTTTTCTTT	NA	False	NA	-7	True	AATAAA	-27	NA	108117470	108117080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_108117100_108117500
transcript_48087.known	chr6	+	3113	5	FSM	ENSMUSG00000030103.12	ENSMUST00000032194.11	3113	5	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_3	24.2899156029822	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAAATGCTGGATTTGTTTT	NA	False	NA	NA	False	ATTAAA	-25	NA	108637589	108643886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_108637954_108638121_108638192_108638465_108638574_108639481_108639606_108641439
transcript_48090.nnic	chr6	-	770	5	NNC	ENSMUSG00000087341.5	novel	544	4	NA	NA	-9174	116	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	14.0779082253011	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAGTCTTGTGTCAGTAG	NA	False	NA	-3	True	AATAAA	-18	NA	108600130	108587177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_108587583_108589268_108589374_108590092_108590176_108590909_108590955_108599998
transcript_48092.nnic	chr6	-	790	5	NNC	ENSMUSG00000087341.5	novel	544	4	NA	NA	-9174	116	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	9.35414346693485	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAGTCTTGTGTCAGTAG	NA	False	NA	-3	True	AATAAA	-18	NA	108600130	108587177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_108587583_108589268_108589394_108590092_108590176_108590909_108590955_108599998
transcript_48093.nnic	chr6	-	760	5	NNC	ENSMUSG00000087341.5	novel	544	4	NA	NA	-9179	116	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	19.0656759649376	6	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAAGTCTTGTGTCAGTAG	NA	False	NA	-3	True	AATAAA	-18	NA	108600135	108587177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_108587583_108589268_108589394_108590092_108590176_108590909_108590955_108600033
transcript_48096.known	chr6	+	4443	7	FSM	ENSMUSG00000030105.9	ENSMUST00000032196.9	4443	7	0	0	0	0	multi-exon	TRUE	canonical	3	458	junction_6	33.5480583972042	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGATGCCTCCTGTGTGTCA	NA	False	NA	NA	False	AATAAA	-18	NA	108760059	108802239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_108760339_108790587_108790669_108791944_108792019_108792218_108792313_108795205_108795274_108795503_108795575_108798463
transcript_481.known	chr1	-	889	3	FSM	ENSMUSG00000086727.9	ENSMUST00000135245.3	889	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTATAGTGCTGTTTCTAA	NA	False	NA	NA	False	AATAAA	-21	NA	31261765	31242011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_31242470_31243332_31243555_31261556
transcript_48100.known	chr6	+	5817	12	FSM	ENSMUSG00000030104.10	ENSMUST00000089162.5	5817	12	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_5	22.3007245184901	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGTCACTGTGTTTCTCC	NA	False	NA	10	True	ATTAAA	-15	NA	108805634	108836309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_108806195_108813700_108813774_108818560_108818665_108819887_108820060_108821787_108821972_108823632_108823808_108825670_108825792_108826355_108826527_108828170_108828245_108829450_108829548_108831205_108831410_108832427
transcript_48101.known	chr6	-	2577	12	FSM	ENSMUSG00000030254.17	ENSMUST00000077088.11	2577	12	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	49.718048005937	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTGCCTTTGTTTGGCAA	NA	False	NA	16	True	CATAAA	-40	NA	112673647	112596810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_112597866_112621548_112621709_112626555_112626799_112642238_112642300_112649084_112649162_112652706_112652892_112656877_112656978_112658299_112658638_112663676_112663748_112664937_112665000_112670429_112670512_112673504
transcript_48113.known	chr6	+	2163	10	FSM	ENSMUSG00000030264.15	ENSMUST00000032398.15	2163	10	0	0	0	0	multi-exon	TRUE	canonical	3	600	junction_1	54.2445309298778	403	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	3	True	ATTAAA	-16	NA	113023185	113045234	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_113023352_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
transcript_48118.nic	chr6	+	2045	10	NIC	ENSMUSG00000030264.15	novel	2163	10	NA	NA	-1	-98	combination_of_known_junctions	FALSE	canonical	3	79	junction_1	204.840377481867	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAAGATGCTTGTGTGACT	NA	False	NA	22	True	AATAAA	-18	NA	113023274	113045136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_113023421_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
transcript_48119.nic	chr6	+	2143	10	NIC	ENSMUSG00000030264.15	novel	2163	10	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	79	junction_1	204.840377481867	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTATGGAAGCGTTATTTT	NA	False	NA	3	True	ATTAAA	-16	NA	113023274	113045234	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_113023421_113024375_113024666_113026299_113026378_113032599_113033077_113036915_113037047_113040061_113040132_113042504_113042621_113043716_113043828_113044228_113044353_113044634
transcript_48128.nic	chr6	+	726	4	NIC	ENSMUSG00000030264.15	novel	649	3	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	72	junction_3	301.439877919296	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTTTGTTGTTGTTTT	NA	False	NA	28	True	ATTAAA	-22	NA	113023274	113027998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_113023352_113024375_113024666_113026299_113026378_113027717
transcript_48132.known	chr6	-	1181	2	FSM	ENSMUSG00000086429.10	ENSMUST00000124246.4	1181	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGGAATGACTTTTTAAT	NA	False	NA	0	True	NA	NA	NA	113054171	113047358	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_113048397_113054028
transcript_48133.known	chr6	-	822	2	FSM	ENSMUSG00000086429.10	ENSMUST00000159544.3	822	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGCAGACTTGTTCGTG	NA	False	NA	NA	False	NA	NA	NA	113054294	113047734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_113048397_113054134
transcript_48134.known	chr6	+	1764	5	FSM	ENSMUSG00000030264.15	ENSMUST00000137396.8	1764	5	0	0	0	0	multi-exon	FALSE	canonical	3	600	junction_1	68.2953146269933	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATGAAAAGAAAAAGAAAAAG	NA	False	NA	NA	False	NA	NA	NA	113023275	113037758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_113023352_113024375_113024666_113026299_113026378_113032599_113033077_113036915
transcript_48135.known	chr6	+	649	3	FSM	ENSMUSG00000030264.15	ENSMUST00000134657.3	649	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	355.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTTTGTTGTTGTTTT	NA	False	NA	28	True	ATTAAA	-22	NA	113024375	113027998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_113024666_113026299_113026378_113027717
transcript_48139.known	chr6	+	2676	19	FSM	ENSMUSG00000030269.15	ENSMUST00000113146.9	2676	19	0	0	0	0	multi-exon	TRUE	canonical	3	298	junction_17	28.028204489649	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCTCAGTCCCCATCAG	1968	False	NA	NA	False	NA	NA	NA	113214803	113258353	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_113215083_113217245_113217395_113226831_113226941_113230691_113230768_113231050_113231112_113232776_113232900_113233983_113234058_113237548_113237620_113238166_113238242_113242404_113242472_113242930_113243017_113243220_113243298_113243519_113243557_113245588_113245657_113246461_113246521_113246692_113246832_113247482_113247663_113254750_113254907_113257563
transcript_48145.known	chr6	-	1496	12	FSM	ENSMUSG00000030272.16	ENSMUST00000032409.15	1496	12	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	8.10570659096682	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCGTTTGCTCAAATAGC	5793	False	NA	NA	False	AATAAA	-20	NA	113320945	113311084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_113311370_113311474_113311593_113313134_113313223_113313318_113313398_113314153_113314267_113315071_113315148_113315240_113315368_113316245_113316385_113316467_113316543_113317252_113317385_113318828_113318944_113320796
transcript_48149.nnic	chr6	+	1407	7	NIC	ENSMUSG00000030271.15	novel	1549	7	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_2	89.2070002235749	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGTGAAGAGTGAGAGGG	2317	False	NA	14	True	AATAAA	-23	NA	113303941	113311149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_113304324_113305325_113305441_113306189_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
transcript_48150.known	chr6	+	1601	7	FSM	ENSMUSG00000030271.15	ENSMUST00000136263.4	1601	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	81.0445693567572	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACGCAGTGAAGAGTGAG	2335	False	NA	10	True	AATAAA	-19	NA	113303959	113311145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_113304324_113305325_113305574_113306106_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
transcript_48152.known	chr6	+	1549	7	FSM	ENSMUSG00000030271.15	ENSMUST00000032406.15	1549	7	0	0	0	0	multi-exon	FALSE	canonical	3	196	junction_2	21.4534379529249	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGTGAAGAGTGAGAGGG	2308	False	NA	14	True	AATAAA	-23	NA	113303932	113311149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_113304324_113305325_113305574_113306189_113306370_113308731_113308914_113310302_113310454_113310591_113310642_113310802
transcript_48158.nnic	chr6	+	1391	6	NIC	ENSMUSG00000030271.15	novel	1549	7	NA	NA	-6	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_4	90.4464482442511	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGCAGTGAAGAGTGAGAGGG	2315	False	NA	14	True	AATAAA	-23	NA	113303939	113311149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_113304324_113305325_113305574_113306189_113306370_113308731_113308914_113310591_113310642_113310802
transcript_4816.known	chr10	+	500	4	FSM	ENSMUSG00000063457.15	ENSMUST00000068408.14	500	4	0	0	0	0	multi-exon	FALSE	canonical	3	5732	junction_1	1157.99510649513	2283	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTGGGTTTTTGTTTTTTT	6342	False	NA	30	True	AATAAA	-21	NA	80128286	80129948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80128318_80128608_80128695_80129475_80129711_80129800
transcript_48160.nic	chr6	-	2271	10	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	1	0	intron_retention	FALSE	canonical	3	134	junction_9	97.0713114476818	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATAAAAAAACCACCCGC	NA	False	NA	18	True	AATAAA	-36	NA	113354843	113343615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354276
transcript_48161.nnic	chr6	-	1744	10	NIC	ENSMUSG00000048930.13	novel	1708	10	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_9	124.029068675626	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTTATAAAAAAACCACCCGC	NA	False	NA	18	True	AATAAA	-36	NA	113354490	113343615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113353852_113353907_113354450
transcript_48164.known	chr6	-	2848	9	FSM	ENSMUSG00000048930.13	ENSMUST00000032410.14	2848	9	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_8	58.2875415504892	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTAGTATCTATCTATT	NA	False	NA	NA	False	TATAAA	-13	NA	113354844	113342985	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_113344142_113347182_113347369_113347899_113348010_113349238_113349343_113349425_113349568_113351739_113351846_113351969_113352221_113352800_113353026_113354276
transcript_48172.known	chr6	+	2270	6	FSM	ENSMUSG00000079426.14	ENSMUST00000156898.5	2270	6	0	0	0	0	multi-exon	FALSE	canonical	3	688	junction_1	248.294985853521	428	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGAAGGGTGCTTTTTGGA	NA	False	NA	NA	False	NA	NA	NA	113355075	113367409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_113355170_113357686_113357806_113358923_113359036_113361042_113361139_113362450_113362622_113365731
transcript_48173.known	chr6	+	1323	5	FSM	ENSMUSG00000079426.14	ENSMUST00000203578.3	1323	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	519.345922772096	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGTCTGTGCTCTGTGTGGG	NA	False	NA	38	True	ATTAAA	-30	NA	113355107	113366613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_113355170_113358923_113359036_113361042_113361139_113362450_113362622_113365731
transcript_48178.known	chr6	-	1224	9	FSM	ENSMUSG00000051169.15	ENSMUST00000060634.14	1224	9	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	50.3374549912885	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAAAGCAGATGTTTACC	NA	False	NA	-18	True	AATAAA	-32	NA	113396280	113392289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_113392684_113393267_113393394_113393749_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
transcript_48183.known	chr6	-	1269	9	FSM	ENSMUSG00000051169.15	ENSMUST00000113092.9	1269	9	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_2	15.858258889298	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTACCAAGGACTGTG	NA	False	NA	-8	True	AATAAA	-42	NA	113396301	113392279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_113392684_113393267_113393408_113393749_113393874_113394101_113394187_113394264_113394373_113394807_113394908_113394991_113395037_113395770_113395911_113396178
transcript_48197.known	chr6	+	1147	2	FSM	ENSMUSG00000051256.11	ENSMUST00000204254.2	1147	2	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	0	551	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTAAGACTGTCCTGTG	NA	False	NA	13	True	AATAAA	-17	NA	113419570	113425170	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_113419766_113424218
transcript_48198.nic	chr6	+	2351	18	NIC	ENSMUSG00000030281.17	novel	2302	17	NA	NA	23	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_5	8.17117899020487	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTAGCACTCGTGTATC	5779	False	NA	6	True	AATAAA	-21	NA	113448410	113460101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_113448749_113449031_113449054_113449191_113449345_113449587_113449651_113449738_113449849_113451121_113451234_113451513_113451559_113453359_113453500_113453695_113453756_113455824_113455880_113455949_113456132_113456211_113456263_113457090_113457137_113457266_113457389_113457718_113457779_113458144_113458197_113459243_113459340_113459457
transcript_482.known	chr1	-	1975	14	FSM	ENSMUSG00000026134.12	ENSMUST00000027312.11	1975	14	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_10	82.0868352460372	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	NA	False	NA	-2	True	AATAAA	-18	NA	33708876	33492890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33701326_33701448_33702857_33702938_33706125_33706230_33707938_33708102_33708704
transcript_48203.known	chr6	+	2306	10	FSM	ENSMUSG00000030284.12	ENSMUST00000032422.6	2306	10	0	0	0	0	multi-exon	TRUE	canonical	3	165	junction_1	17.0945085399441	146	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGCTTCAGTCTTAACA	1457	False	NA	13	True	AATAAA	-19	NA	113460257	113470299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_113461038_113461455_113461539_113465031_113465143_113465439_113465532_113466394_113466572_113466655_113466752_113468613_113468698_113468854_113468951_113469084_113469220_113469647
transcript_48210.known	chr6	-	1903	3	FSM	ENSMUSG00000045009.10	ENSMUST00000205170.2	1903	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTGTTGTGTTGTTTCTT	4329	False	NA	NA	False	NA	NA	NA	113478848	113473228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_113474049_113474232_113475278_113478810
transcript_48211.known	chr6	-	1956	3	FSM	ENSMUSG00000045009.10	ENSMUST00000205075.2	1956	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAATCAAAAGCACTTTTG	4323	False	NA	NA	False	NA	NA	NA	113478854	113473260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_113474049_113474232_113475357_113478810
transcript_48214.known	chr6	-	1985	8	FSM	ENSMUSG00000030286.7	ENSMUST00000032425.7	1985	8	0	0	0	0	multi-exon	FALSE	canonical	3	306	junction_2	13.3386044002714	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTTGCTTCTGTGGGTTCT	NA	False	NA	2	True	ATTAAA	-29	NA	113508613	113491834	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_113492993_113494057_113494141_113494842_113494923_113496875_113496958_113497437_113497543_113499274_113499369_113499710_113499769_113508288
transcript_48218.known	chr6	-	1216	1	FSM	ENSMUSG00000030286.7	ENSMUST00000203526.2	1216	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAACCAAAAAAAAAGAAG	NA	False	NA	NA	False	NA	NA	NA	113508579	113507363	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_113507400_113508600
transcript_48219.known	chr6	+	5512	44	FSM	ENSMUSG00000034023.17	ENSMUST00000036340.12	5512	44	0	0	0	0	multi-exon	TRUE	canonical	3	237	junction_19	37.6323336574577	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTGTTGTTGGTTTTTT	NA	False	NA	11	True	ATTAAA	-16	NA	113508642	113573978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221_113516275_113519167_113519247_113521970_113522096_113523553_113523642_113525302_113525408_113525810_113525912_113526261_113526371_113526553_113526590_113528720_113528865_113530640_113530776_113532095_113532228_113533223_113533335_113537046_113537157_113538666_113538728_113539333_113539454_113540053_113540128_113540405_113540550_113541254_113541356_113542117_113542234_113543770_113543880_113545168_113545280_113545564_113545678_113547833_113547978_113549604_113549722_113551047_113551177_113551534_113551654_113554325_113554437_113555321_113555453_113558344_113558439_113560372_113560496_113561809_113561904_113562432_113562505_113563170_113563210_113564342_113564418_113565305_113565381_113568119_113568267_113570190_113570293_113572848
transcript_4822.known	chr10	+	572	3	FSM	ENSMUSG00000063457.15	ENSMUST00000062674.7	572	3	0	0	0	0	multi-exon	FALSE	canonical	3	7729	junction_2	373	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATAAAGACTGGTTTTGGT	6534	False	NA	3	True	NA	NA	NA	80128478	80129921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80128695_80129475_80129711_80129800
transcript_48220.nic	chr6	+	1613	16	ISM	ENSMUSG00000034023.17	ENSMUST00000204827.3	4707	43	-43	42375	-21	-92	5prime_fragment	FALSE	canonical	3	240	junction_9	45.6515303382288	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCTGGGTGGTTAGATGA	NA	False	NA	NA	False	AATAAA	-20	NA	113508621	113530859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221_113516275_113519167_113519247_113521970_113522096_113523553_113523642_113525302_113525408_113525810_113525912_113526261_113526371_113526553_113526590_113528720_113528865_113530640
transcript_48221.nic	chr6	+	1985	16	ISM	ENSMUSG00000034023.17	ENSMUST00000204827.3	4707	43	-43	42003	-21	280	5prime_fragment	FALSE	canonical	3	240	junction_9	45.6515303382288	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTTTGTTTTTTCTTCG	NA	False	NA	13	True	NA	NA	NA	113508621	113531231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221_113516275_113519167_113519247_113521970_113522096_113523553_113523642_113525302_113525408_113525810_113525912_113526261_113526371_113526553_113526590_113528720_113528865_113530640
transcript_48223.nic	chr6	+	1576	7	ISM	ENSMUSG00000034023.17	ENSMUST00000204827.3	4707	43	-43	55991	-21	1563	5prime_fragment	FALSE	canonical	3	301	junction_6	36.735163293801	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGCAATGCAAGCTGGGTG	NA	False	NA	NA	False	NA	NA	NA	113508621	113517243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884_113513989_113514567_113514629_113516221
transcript_48224.known	chr6	+	2142	5	FSM	ENSMUSG00000034023.17	ENSMUST00000101051.5	2142	5	0	0	0	0	multi-exon	FALSE	canonical	3	329	junction_3	30.62984655528	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATATTCTTAGAGGATGT	NA	False	NA	NA	False	ATTAAA	-19	NA	113508664	113515680	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_113508710_113510734_113510833_113512729_113512865_113513674_113513743_113513884
transcript_48227.known	chr6	-	1358	4	FSM	ENSMUSG00000033963.17	ENSMUST00000035870.5	1358	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.942809041582063	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCACATGTTTGATGTTGTC	NA	False	NA	NA	False	AATAAA	-23	NA	113577676	113573722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_113574314_113574433_113575013_113575569_113575671_113577589
transcript_48228.known	chr6	+	1095	3	FSM	ENSMUSG00000033940.9	ENSMUST00000035725.7	1095	3	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_2	10.5	303	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGATGTTTATGATCTGTT	NA	False	NA	11	True	AATAAA	-21	NA	113581732	113593912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_113581858_113592736_113592820_113593025
transcript_4823.known	chr10	-	1649	2	FSM	ENSMUSG00000020133.9	ENSMUST00000020341.9	1649	2	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_1	0	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGAGTGGCTCGCTTTATTA	8717	False	NA	NA	False	GATAAA	-19	NA	80156371	80154087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80155382_80156016
transcript_48230.known	chr6	+	2792	3	FSM	ENSMUSG00000033933.14	ENSMUST00000035673.8	2792	3	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_1	12	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTACTGTGTTGTGTTACCT	158	False	NA	19	True	AATAAA	-19	NA	113600919	113608594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_113601340_113605052_113605176_113606345
transcript_48233.nic	chr6	+	1830	3	ISM	ENSMUSG00000060477.15	ENSMUST00000113024.3	1887	10	16982	-1211	-3985	0	3prime_fragment	FALSE	canonical	3	24	junction_1	1	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCAGCTGTCTTATAATTT	3007	False	NA	9	True	AATAAA	-14	NA	113663720	113671970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_113663920_113667743_113668033_113670628
transcript_48235.known	chr6	-	1353	9	FSM	ENSMUSG00000030298.11	ENSMUST00000032440.6	1353	9	0	0	0	0	multi-exon	FALSE	canonical	3	942	junction_8	78.4968152220203	1179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTCATCCCACACAGTGAG	-11	True	NA	-10	True	AATAAA	-23	NA	113717704	113705022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_113705425_113706556_113706704_113707295_113707420_113707734_113707869_113711506_113711641_113712017_113712170_113713332_113713449_113714914_113714960_113717605
transcript_48236.nic	chr6	-	2369	12	NIC	ENSMUSG00000030302.18	novel	4586	24	NA	NA	5	13867	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	6.72972928120791	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGGGACATGGTTTCAGTC	NA	False	NA	NA	False	AATAAA	-22	NA	113868326	113766431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_113766957_113770626_113770842_113773199_113773359_113774070_113774113_113779446_113779507_113780707_113780741_113782421_113782548_113789745_113789872_113790747_113791006_113794108_113794307_113819092_113819607_113868213
transcript_48238.known	chr6	+	2543	21	FSM	ENSMUSG00000030314.17	ENSMUST00000182902.8	2543	21	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	41.8782759912583	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCTCAGGTCCTTCC	NA	False	NA	6	True	NA	NA	NA	114620089	114836185	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_114620112_114648062_114648214_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
transcript_48240.nic	chr6	+	2421	20	NIC	ENSMUSG00000030314.17	novel	2543	21	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	29.4466041008941	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCTCAGGTCCTTCC	NA	False	NA	6	True	NA	NA	NA	114620060	114836185	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_114620112_114649751_114649805_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
transcript_48242.known	chr6	+	3761	19	FSM	ENSMUSG00000030314.17	ENSMUST00000032457.17	3761	19	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	29.6327313191359	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTCTTTTTTTCCTACAG	NA	False	NA	NA	False	TATAAA	-15	NA	114620057	114837575	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_114620112_114649934_114650102_114650608_114650664_114654900_114655019_114657122_114657201_114661361_114661479_114663030_114663181_114672583_114672673_114673991_114674114_114678117_114678209_114678885_114679031_114680288_114680448_114683093_114683289_114684464_114684666_114686054_114686171_114690253_114690330_114701854_114701936_114753917_114754041_114835951
transcript_48244.known	chr6	-	1023	6	FSM	ENSMUSG00000030315.16	ENSMUST00000147639.8	1023	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.489897948556636	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTTGCCAAAGCACTAGG	NA	False	NA	NA	False	NA	NA	NA	114946141	114839281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_114839398_114839716_114839841_114840844_114841041_114867577_114867768_114934896_114934973_114945820
transcript_48245.nic	chr6	-	1237	6	NIC	ENSMUSG00000030315.16	novel	1023	6	NA	NA	-5	118	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	0.489897948556636	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGGGGGAGGGTGGGTG	NA	False	NA	NA	False	NA	NA	NA	114946960	114839033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_114839398_114839716_114839841_114840844_114841041_114867577_114867768_114934896_114934973_114946673
transcript_4825.known	chr10	+	2127	5	FSM	ENSMUSG00000035504.17	ENSMUST00000105357.2	2127	5	0	0	0	0	multi-exon	FALSE	canonical	3	489	junction_4	47.9921868641136	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGTGTGTCCGCTAAGCTG	7027	False	NA	18	True	AATAAA	-19	NA	80165786	80172275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80166180_80169336_80169431_80169522_80169662_80169799_80169969_80170943
transcript_48250.known	chr6	-	1168	8	FSM	ENSMUSG00000030316.14	ENSMUST00000032461.12	1168	8	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_6	13.6695699587494	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGTCACTCTGACTGGCT	NA	False	NA	-34	True	AATAAA	-25	NA	115014837	114981341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002386_115009180_115009274_115011911_115012095_115014610
transcript_48254.nnic	chr6	-	826	7	NNC	ENSMUSG00000030316.14	novel	1168	8	NA	NA	-2302	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_6	166.976462080405	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAGTTGCTTGTCACTCTG	NA	False	NA	-41	True	AATAAA	-18	NA	115011528	114981348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_114981481_114987767_114987831_114989118_114989285_114993043_114993190_115002234_115002386_115009180_115009274_115011453
transcript_4826.known	chr10	-	1957	13	FSM	ENSMUSG00000043822.19	ENSMUST00000095446.10	1957	13	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_5	5.64702478203247	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAAATCCCTCGCCCCTCA	NA	False	NA	NA	False	NA	NA	NA	80184246	80176674	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80177291_80177422_80177495_80177576_80177776_80177892_80178057_80178140_80178228_80178742_80178855_80179432_80179561_80180666_80180776_80180876_80180938_80181155_80181248_80181346_80181538_80183390_80183460_80184189
transcript_48260.nic	chr6	-	1826	4	NIC	ENSMUSG00000030316.14	novel	531	2	NA	NA	-23	815	combination_of_known_junctions	FALSE	canonical	3	27	junction_1	196.862614248843	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAATGTGTGCAAATGTTTC	NA	False	NA	1	True	ATTAAA	-21	NA	115014860	115007423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_115008724_115009180_115009274_115011911_115012095_115014610
transcript_48262.known	chr6	+	2106	12	FSM	ENSMUSG00000042389.14	ENSMUST00000040234.9	2106	12	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	38.6343314973604	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTCTCCGACCGGCCTCCA	NA	False	NA	NA	False	AATGAA	-30	NA	115521624	115555589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_115521690_115524782_115524992_115526873_115526956_115530951_115530989_115536553_115537062_115538340_115538419_115542837_115542889_115545656_115545796_115551523_115551561_115552822_115552935_115553856_115553947_115554891
transcript_48263.nic	chr6	+	1705	11	NIC	ENSMUSG00000042389.14	novel	2106	12	NA	NA	-11	-292	combination_of_known_junctions	FALSE	canonical	3	50	junction_2	74.5318723768563	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTTTTTGAGAGAATAAATG	NA	False	NA	14	True	AATAAA	-14	NA	115521651	115555297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_115521690_115524782_115524992_115530951_115530989_115536553_115537062_115538340_115538419_115542837_115542889_115545656_115545796_115551523_115551561_115552822_115552935_115553856_115553947_115554891
transcript_48267.known	chr6	+	638	4	FSM	ENSMUSG00000042389.14	ENSMUST00000130425.8	638	4	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	54.9201440477192	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGTCTCCCAGCCTTGCT	NA	False	NA	NA	False	TATAAA	-23	NA	115521624	115531233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_115521690_115524782_115524992_115526873_115526956_115530951
transcript_48268.known	chr6	-	3070	17	FSM	ENSMUSG00000000441.18	ENSMUST00000000451.14	3070	17	0	0	0	0	multi-exon	FALSE	canonical	3	610	junction_8	72.4119076878934	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCAGTGCAGTTTCTTGT	8144	False	NA	0	True	AATAAA	-43	NA	115653596	115595529	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_115596371_115596519_115596655_115596745_115596878_115597169_115597289_115598776_115598824_115599837_115600015_115600424_115600510_115603251_115603370_115603672_115603801_115603899_115603928_115608175_115608330_115609857_115609957_115611513_115611672_115611938_115612042_115614559_115614673_115621370_115621604_115653196
transcript_4827.known	chr10	-	989	8	FSM	ENSMUSG00000043822.19	ENSMUST00000105352.2	989	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	4.16986271980755	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTGCCTCCCCTCAGTA	NA	False	NA	NA	False	AATAGA	-16	NA	80184246	80178572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80178855_80179432_80179561_80180666_80180776_80180876_80180938_80181155_80181248_80181346_80181538_80183390_80183460_80184189
transcript_48271.known	chr6	+	6230	8	FSM	ENSMUSG00000000439.10	ENSMUST00000000449.9	6230	8	0	0	0	0	multi-exon	FALSE	canonical	2	438	junction_3	36.5396066911353	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATACCTACACAAAGATCCA	NA	False	NA	NA	False	NA	NA	NA	115578862	115599585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_115578975_115586541_115586671_115587479_115587662_115588595_115588901_115590287_115590503_115591535_115591647_115594258_115594404_115594554
transcript_48275.nnic	chr6	-	1506	13	NNC	ENSMUSG00000059900.15	novel	1554	12	NA	NA	-990	0	at_least_one_novel_splicesite	TRUE	canonical	3	12	junction_9	21.6260837878706	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115737222	115706091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115718501_115718634_115719270_115719349_115736555_115736685_115737065
transcript_48277.known	chr6	-	1272	12	FSM	ENSMUSG00000059900.15	ENSMUST00000072933.13	1272	12	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_11	22.1650458199018	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAGTCGACTAAA	NA	False	NA	NA	False	AATAAA	-20	NA	115735960	115706101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115718501_115718634_115719270_115719349_115735898
transcript_48279.nnic	chr6	-	1374	12	NNC	ENSMUSG00000059900.15	novel	1554	12	NA	NA	-990	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_11	21.523003262126	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115737222	115706091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115719270_115719349_115736555_115736685_115737065
transcript_4828.known	chr10	+	2112	15	FSM	ENSMUSG00000035486.15	ENSMUST00000039836.15	2112	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	3.1134992453862	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGCTTCCTTTTTGTTT	NA	False	NA	14	True	AATAAA	-20	NA	80192292	80201323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80192502_80193817_80193926_80194075_80194193_80194608_80194751_80195075_80195164_80195243_80195340_80195988_80196188_80196273_80196401_80196519_80196597_80196955_80197029_80197237_80197316_80198842_80199000_80199849_80199980_80200056_80200168_80200923
transcript_48282.nnic	chr6	-	1303	11	NIC	ENSMUSG00000059900.15	novel	1554	12	NA	NA	-77	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_9	20.1992574120932	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115739448	115706091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115715908_115715984_115719270_115719349_115739233
transcript_48286.nnic	chr6	-	1228	10	NIC	ENSMUSG00000059900.15	novel	843	11	NA	NA	-77	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_8	20.2319878739914	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCGACTAAATATTCCTTTA	NA	False	NA	NA	False	AATAAA	-30	NA	115739448	115706091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_115706646_115707396_115707460_115707967_115708043_115708145_115708218_115710614_115710663_115710955_115710989_115711770_115711807_115713343_115713398_115719270_115719349_115739233
transcript_48289.known	chr6	-	517	4	FSM	ENSMUSG00000057841.6	ENSMUST00000081840.6	517	4	0	0	0	0	multi-exon	FALSE	canonical	3	14202	junction_3	1766.83093575915	11268	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTATGTTTTTGGTAAC	NA	False	NA	-24	True	AATAAA	-22	NA	115785708	115782465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_115782650_115783946_115784129_115784762_115784864_115785658
transcript_4829.known	chr10	+	2100	15	FSM	ENSMUSG00000035486.15	ENSMUST00000105351.2	2100	15	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_11	2.25876975726313	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGCTTCCTTTTTGTTT	NA	False	NA	14	True	AATAAA	-20	NA	80192292	80201323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80192502_80193817_80193926_80194075_80194193_80194620_80194751_80195075_80195164_80195243_80195340_80195988_80196188_80196273_80196401_80196519_80196597_80196955_80197029_80197237_80197316_80198842_80199000_80199849_80199980_80200056_80200168_80200923
transcript_48290.known	chr6	-	906	3	FSM	ENSMUSG00000057841.6	ENSMUST00000203816.2	906	3	0	0	0	0	multi-exon	FALSE	canonical	3	17944	junction_1	6	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCGTATTTTCTATGTTTT	NA	False	NA	25	True	AATAAA	-15	NA	115785309	115782472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_115782650_115783946_115784129_115784762
transcript_48292.known	chr6	-	2384	9	FSM	ENSMUSG00000030321.16	ENSMUST00000184428.6	2384	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_5	2.36841191518705	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAAAAAAAAAACAAAACAT	NA	False	NA	NA	False	NA	NA	NA	115815373	115787856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_115788195_115789154_115789212_115791461_115791613_115792898_115793113_115794193_115794391_115797005_115797163_115799077_115799264_115800217_115800673_115814744
transcript_48294.known	chr6	-	3614	8	FSM	ENSMUSG00000030322.13	ENSMUST00000032469.13	3614	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	37.2010533096435	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCCCTTTGGCATTGTGTT	7881	False	NA	NA	False	AATAAA	-21	NA	115830332	115817657	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_115819524_115821023_115821128_115821530_115821681_115822274_115822410_115822503_115822579_115825866_115826694_115827578_115827801_115830097
transcript_48301.known	chr6	-	2551	9	FSM	ENSMUSG00000030321.16	ENSMUST00000032468.12	2551	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	3.53553390593274	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTCGTGTGATTTCCTG	NA	False	NA	NA	False	AATAAA	-37	NA	115815373	115787689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_115788195_115789154_115789211_115791460_115791613_115792898_115793113_115794193_115794391_115797005_115797163_115799077_115799264_115800217_115800673_115814744
transcript_48302.known	chr6	+	4122	29	FSM	ENSMUSG00000030323.14	ENSMUST00000112925.8	4122	29	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	9.69483346522091	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGCGTTTTAGCAAATC	NA	False	NA	10	True	AATAAA	-22	NA	115830430	115903660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_115830671_115839675_115839743_115841325_115841411_115852204_115852284_115854435_115854513_115857604_115857672_115858437_115858585_115861296_115861373_115863869_115864062_115864187_115864327_115865681_115865885_115867424_115867563_115868825_115868991_115871182_115871381_115876439_115876581_115879818_115879873_115882755_115882918_115887185_115887353_115889391_115889564_115890832_115890936_115892867_115893009_115893933_115894029_115897311_115897413_115900226_115900393_115900836_115900949_115901307_115901434_115902376_115902457_115902713_115902879_115903196
transcript_48303.known	chr6	+	4307	31	FSM	ENSMUSG00000024104.12	ENSMUST00000036759.11	4307	31	0	0	0	0	multi-exon	TRUE	canonical	3	196	junction_27	51.0355975983648	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAGAGTGCATGGAAGCT	NA	False	NA	31	True	AATAAA	-34	NA	116184998	116239647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_116185089_116185167_116185291_116185914_116186080_116190908_116190972_116193006_116193181_116194710_116194805_116195621_116195684_116196913_116196962_116197497_116197606_116198776_116198859_116200156_116200214_116201381_116201498_116201936_116201995_116203384_116203448_116204306_116204496_116206183_116206312_116208502_116208590_116213057_116213160_116215092_116215225_116218407_116218584_116221550_116221654_116223068_116223222_116224936_116225120_116231050_116231180_116231373_116231455_116232009_116232130_116233187_116233251_116233576_116233790_116235602_116236218_116237451_116237630_116239295
transcript_48308.known	chr6	+	3123	10	FSM	ENSMUSG00000042213.18	ENSMUST00000036503.14	3123	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	4.89393678789894	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATGACTTTATTTGATTAT	NA	False	NA	NA	False	AATAAA	-13	NA	116241223	116307260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_116241274_116250533_116250834_116261700_116261777_116262814_116262883_116264942_116265130_116282577_116282723_116290805_116291979_116292548_116292604_116305167_116305286_116306309
transcript_48310.known	chr6	+	2790	7	FSM	ENSMUSG00000042213.18	ENSMUST00000222494.2	2790	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.23609564462324	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTATGACTTTATTTGATTA	NA	False	NA	NA	False	AATAAA	-12	NA	116243492	116307259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_116243542_116250533_116250834_116282577_116282723_116290805_116291979_116292548_116292604_116305167_116305286_116306309
transcript_48311.nic	chr6	+	988	5	ISM	ENSMUSG00000042213.18	ENSMUST00000112900.9	3220	12	-24	41888	-24	-17460	5prime_fragment	FALSE	canonical	2	5	junction_4	4.43705983732471	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTTTGTTTCCATTCATTT	NA	False	NA	NA	False	TATAAA	-38	NA	116241158	116265371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_116241274_116250533_116250834_116261700_116261777_116262814_116262883_116264942
transcript_48314.known	chr6	-	3187	2	FSM	ENSMUSG00000059878.13	ENSMUST00000079749.6	3187	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATTGAATGCCAATGTG	NA	False	NA	NA	False	AATAAA	-10	NA	116605960	116600976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_116604095_116605891
transcript_48315.known	chr6	-	2523	2	FSM	ENSMUSG00000059878.13	ENSMUST00000112880.8	2523	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGGGAAATTGTTTGCA	NA	False	NA	13	True	AATAAA	-36	NA	116605662	116601864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_116604095_116605369
transcript_48316.known	chr6	-	6460	11	FSM	ENSMUSG00000042129.9	ENSMUST00000035842.7	6460	11	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	5.29528091794949	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCGTGTGTTACTGTTT	8606	False	NA	0	True	AATAAA	-18	NA	116650913	116609968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_116615260_116616401_116616500_116617193_116617316_116618388_116618441_116618645_116618748_116622056_116622218_116622846_116622939_116624527_116624671_116636485_116636562_116638803_116638898_116650684
transcript_48317.known	chr6	+	1098	3	FSM	ENSMUSG00000059689.16	ENSMUST00000164472.8	1098	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	15	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGGTATTTTTCATAATT	NA	False	NA	10	True	AATAAA	-17	NA	117818202	117822916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_117818230_117820213_117820354_117821985
transcript_48318.known	chr6	+	650	3	FSM	ENSMUSG00000059689.16	ENSMUST00000112858.8	650	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	6	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACTGGACAGAAACCCTA	NA	False	NA	NA	False	NA	NA	NA	117818241	117822374	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_117818359_117820213_117820358_117821985
transcript_48319.known	chr6	+	1202	4	FSM	ENSMUSG00000059689.16	ENSMUST00000112861.8	1202	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	26.1661358757205	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGGTATTTTTCATAATTT	NA	False	NA	11	True	AATAAA	-18	NA	117818206	117822917	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_117818230_117818968_117819076_117820213_117820354_117821985
transcript_4832.known	chr10	-	1662	7	FSM	ENSMUSG00000035478.15	ENSMUST00000092295.10	1662	7	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_6	355.847657791302	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235384	80228372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80234955
transcript_48321.known	chr6	+	2812	4	FSM	ENSMUSG00000042097.18	ENSMUST00000172088.8	2812	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	8.52447456836295	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGTCCAATGTGTTCATTT	NA	False	NA	12	True	TTTAAA	-6	NA	117840037	117849726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_117840104_117843355_117843536_117846178_117846235_117847216
transcript_48325.known	chr6	+	3158	3	FSM	ENSMUSG00000042097.18	ENSMUST00000079405.15	3158	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	2	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCCCACACGACTACAGG	NA	False	NA	NA	False	AATAAA	-16	NA	117840037	117850252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_117840104_117846178_117846235_117847216
transcript_48326.known	chr6	+	538	5	FSM	ENSMUSG00000042079.14	ENSMUST00000177918.8	538	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	2001.47200517519	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGAAAAAAGACAGGGAAAGC	3766	False	NA	NA	False	NA	NA	NA	117883787	117900928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117896251_117896327_117900668
transcript_48327.known	chr6	+	391	5	FSM	ENSMUSG00000042079.14	ENSMUST00000179224.8	391	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	2359.29156474989	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCGTGGCCTACCCTGGTC	3729	False	NA	NA	False	NA	NA	NA	117883750	117900759	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_117883801_117884109_117884170_117894430_117894560_117896059_117896121_117900668
transcript_4833.known	chr10	-	1566	7	FSM	ENSMUSG00000035478.15	ENSMUST00000105349.8	1566	7	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_6	141.458376288653	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235384	80228372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80235051
transcript_48330.known	chr6	+	2271	4	FSM	ENSMUSG00000042079.14	ENSMUST00000167182.8	2271	4	0	0	0	0	multi-exon	TRUE	canonical	3	103	junction_1	2299.04709728956	733	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGCACAGCTTATGTACT	NA	False	NA	NA	False	AATAAA	-16	NA	117877300	117902582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_117877468_117894430_117894560_117896059_117896121_117900668
transcript_48333.known	chr6	+	2147	4	FSM	ENSMUSG00000042079.14	ENSMUST00000035493.14	2147	4	0	0	0	0	multi-exon	FALSE	canonical	3	2150	junction_1	1335.10981654028	2457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTGGCACAGCTTATGTA	3734	False	NA	NA	False	AATAAA	-14	NA	117883755	117902580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_117883801_117894430_117894560_117896059_117896121_117900668
transcript_48336.nnic	chr6	+	2248	4	NNC	ENSMUSG00000042079.14	novel	2280	3	NA	NA	926	0	at_least_one_novel_splicesite	FALSE	canonical	3	135	junction_1	2283.97154097856	758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGCACAGCTTATGTACT	4714	False	NA	NA	False	AATAAA	-16	NA	117884735	117902582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_117884880_117894430_117894560_117896059_117896121_117900668
transcript_48338.known	chr6	+	956	4	FSM	ENSMUSG00000042079.14	ENSMUST00000179478.8	956	4	0	0	0	0	multi-exon	FALSE	canonical	3	625	junction_1	2053.14430948133	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGACAGGCCTGGCACAG	NA	False	NA	NA	False	NA	NA	NA	117893941	117901343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_117894033_117894430_117894560_117896059_117896121_117900668
transcript_4834.known	chr10	-	1222	7	FSM	ENSMUSG00000035478.15	ENSMUST00000105348.8	1222	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_5	422.225617676406	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CACACTGAAAGCAGATGAGC	NA	False	NA	NA	False	NA	NA	NA	80235256	80228672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897_80231120_80231269_80231430_80235051
transcript_48340.known	chr6	-	550	9	FSM	ENSMUSG00000004988.10	ENSMUST00000204214.3	550	9	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	4.92442890089805	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTGTGGTCTTGTGACC	2519	False	NA	NA	False	ATTAAA	-16	NA	117914296	117910520	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_117910710_117910804_117910843_117911275_117911313_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912881_117913698_117913742_117914251
transcript_48341.known	chr6	-	815	10	FSM	ENSMUSG00000004988.10	ENSMUST00000203082.3	815	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	5.17353187858792	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGTGGTCTTGTGACCC	2162	False	NA	NA	False	ATTAAA	-17	NA	117914653	117910519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_117910710_117910804_117910843_117911275_117911313_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912884_117913698_117913742_117914251_117914485_117914580
transcript_48344.known	chr6	-	586	9	FSM	ENSMUSG00000004988.10	ENSMUST00000204950.3	586	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4.98591766879478	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTGTGGTCTTGTGACC	2519	False	NA	NA	False	ATTAAA	-16	NA	117914296	117910520	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_117910710_117910804_117910843_117911275_117911346_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912884_117913698_117913742_117914251
transcript_48348.known	chr6	-	522	9	FSM	ENSMUSG00000004988.10	ENSMUST00000203066.3	522	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.1720402163943	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTTTGTGGTCTTGTGACC	2519	False	NA	NA	False	ATTAAA	-16	NA	117914296	117910520	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_117910679_117910804_117910843_117911275_117911313_117911386_117911462_117911969_117911994_117912115_117912149_117912814_117912884_117913698_117913742_117914251
transcript_48349.known	chr6	+	2227	13	FSM	ENSMUSG00000030134.12	ENSMUST00000203482.2	2227	13	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_10	5.92780641459291	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGGAAAAAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	118043379	118067532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_118043424_118057318_118057523_118059974_118060098_118061381_118061520_118062224_118062447_118062733_118062809_118063177_118063271_118063987_118064091_118064167_118064248_118065069_118065262_118066063_118066188_118066395_118066469_118066776
transcript_48354.known	chr6	-	3661	8	FSM	ENSMUSG00000042042.15	ENSMUST00000049344.15	3661	8	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	9.61291648072041	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAATGTGGTAAGTTCAT	NA	False	NA	NA	False	AATAAA	-24	NA	118116101	118084412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_118086356_118091326_118091409_118096570_118096666_118097905_118098085_118101272_118101375_118103082_118103300_118105655_118106581_118115983
transcript_48357.known	chr6	-	4345	23	FSM	ENSMUSG00000030138.9	ENSMUST00000032237.8	4345	23	0	0	0	0	multi-exon	FALSE	canonical	2	285	junction_22	59.9717047606688	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGCCTAGTGATTTATT	8285	False	NA	-1	True	ATTAAA	-16	NA	118396435	118360341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_118360837_118361199_118361362_118365716_118365893_118366199_118366348_118368118_118368242_118369278_118369338_118369504_118369686_118369763_118369953_118373087_118373268_118373723_118373798_118375034_118375117_118380049_118380208_118381216_118381319_118381540_118382302_118384971_118385112_118388442_118388637_118388915_118389038_118390039_118390183_118390691_118390881_118393423_118393504_118394348_118394540_118395369_118395579_118396248
transcript_48362.nic	chr6	-	1383	8	ISM	ENSMUSG00000030138.9	ENSMUST00000032237.8	4345	23	55	27978	-7	2475	5prime_fragment	FALSE	canonical	2	285	junction_7	46.290564119814	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTTCTTTCCATTGAAC	8340	False	NA	NA	False	AATAAA	-17	NA	118396380	118388319	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_118388637_118388915_118389038_118390039_118390183_118390691_118390881_118393423_118393504_118394348_118394540_118395369_118395579_118396248
transcript_48372.known	chr6	+	3313	9	FSM	ENSMUSG00000041477.15	ENSMUST00000112777.9	3313	9	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	11.8684192291981	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTATACTTATGCTTTA	NA	False	NA	NA	False	AATAAA	-28	NA	119152213	119198577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_119152404_119157025_119157067_119160610_119160739_119175888_119175956_119177782_119177913_119183430_119183560_119191730_119192568_119194763_119194941_119196963
transcript_48376.known	chr6	-	4184	8	FSM	ENSMUSG00000030168.14	ENSMUST00000032272.13	4184	8	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_7	32.1685611510775	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTGTGTTTTTTTTT	7325	False	NA	0	True	AATAAA	-21	NA	119394665	119330110	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_119332890_119334176_119334371_119335882_119336071_119336311_119336499_119338788_119338961_119342221_119342342_119347110_119347370_119394380
transcript_48379.known	chr6	-	2174	5	FSM	ENSMUSG00000030170.15	ENSMUST00000117171.8	2174	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	2.73861278752583	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTCTCCCTCTCCTTATT	NA	False	NA	NA	False	ATTAAA	-17	NA	119426347	119409491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_119410818_119417242_119417536_119423295_119423544_119425096_119425234_119426177
transcript_4838.nic	chr10	-	1565	6	NIC	ENSMUSG00000035478.15	novel	1662	7	NA	NA	45	0	intron_retention	FALSE	canonical	3	303	junction_5	389.715485963799	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235211	80228372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80234955
transcript_48380.known	chr6	+	2963	1	FSM	ENSMUSG00000030019.7	ENSMUST00000032094.7	2963	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCCCCCTTGTATCTGTGA	NA	False	NA	42	True	AATAAA	-43	NA	119456628	119459591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_119456600_119459600
transcript_48385.known	chr6	-	1887	12	FSM	ENSMUSG00000030177.15	ENSMUST00000112703.8	1887	12	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_10	38.004349468349	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACATCAAAACCAGAGAGGAA	NA	False	NA	NA	False	NA	NA	NA	120334433	120301995	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120334287
transcript_48386.known	chr6	-	2610	12	FSM	ENSMUSG00000030177.15	ENSMUST00000032283.12	2610	12	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_10	52.5397920824409	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCAGGGCTCTACAAAGTC	NA	False	NA	-14	True	AATAAA	-18	NA	120334390	120301283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_120302455_120306054_120306208_120306294_120306421_120308772_120308993_120311729_120311879_120315029_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327406_120330961_120331016_120334287
transcript_4839.nic	chr10	-	1475	6	NIC	ENSMUSG00000035478.15	novel	1566	7	NA	NA	39	0	intron_retention	FALSE	canonical	3	918	junction_5	149.282818837266	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80235217	80228372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897_80231036_80231269_80231430_80235051
transcript_48400.nic	chr6	+	1273	6	ISM	ENSMUSG00000030180.16	ENSMUST00000135802.8	3665	21	-15	36461	-15	-5088	5prime_fragment	FALSE	canonical	3	44	junction_5	5.74804314527997	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GATAAAGAAGGTAAAATCTG	NA	False	NA	NA	False	GGGGCT	-37	NA	120341069	120359973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_120341740_120343530_120343609_120345892_120346016_120351777_120351949_120358495_120358631_120359877
transcript_48401.known	chr6	-	981	7	FSM	ENSMUSG00000030177.15	ENSMUST00000123114.8	981	7	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_5	42.7762265230999	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGCTTTGTTTTGTTT	NA	False	NA	NA	False	AATATA	-20	NA	120334338	120314733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_120315122_120316095_120316160_120318933_120319031_120325348_120325492_120327167_120327352_120330961_120331016_120334287
transcript_48403.nnic	chr6	-	1923	8	NNC	ENSMUSG00000058979.8	novel	1928	8	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	77.5305074911595	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTCTTGTGAGGATT	NA	False	NA	35	True	ATTAAA	-21	NA	120508321	120486454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_120487378_120487591_120487781_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
transcript_48404.known	chr6	-	1928	8	FSM	ENSMUSG00000058979.8	ENSMUST00000075303.7	1928	8	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_3	16.3245151817249	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGTCTTGTGAGGATT	NA	False	NA	35	True	ATTAAA	-21	NA	120508280	120486454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_120487424_120487591_120487781_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
transcript_48406.nnic	chr6	-	1022	7	NNC	ENSMUSG00000058979.8	novel	1882	3	NA	NA	-41	-3364	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	80.8386596183341	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGAAATTCTTTTGTT	NA	False	NA	NA	False	AAGAAA	-7	NA	120508321	120489818	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_120490030_120491358_120491534_120494010_120494042_120495404_120495499_120498154_120498268_120500366_120500571_120508127
transcript_48409.known	chr6	-	1312	9	FSM	ENSMUSG00000019210.11	ENSMUST00000019354.11	1312	9	0	0	0	0	multi-exon	FALSE	canonical	3	841	junction_3	98.1488028454754	865	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGTTGTTGTTCCTTATG	NA	False	NA	-3	True	ATTAAA	-19	NA	120799754	120772204	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_120772726_120774837_120774926_120778003_120778099_120780268_120780338_120781003_120781094_120784546_120784614_120785322_120785433_120795294_120795361_120799548
transcript_4841.nic	chr10	-	1288	5	ISM	ENSMUSG00000035478.15	ENSMUST00000105347.2	914	6	303	-443	-90	0	3prime_fragment	FALSE	canonical	3	1097	junction_1	94.3328548279972	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80231250	80228372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_80228853_80228928_80229115_80229726_80229905_80230399_80230491_80230897
transcript_48414.known	chr6	+	6925	7	FSM	ENSMUSG00000009112.5	ENSMUST00000009256.4	6925	7	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_2	15.192286054296	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGACTCATCTTTTTGT	NA	False	NA	17	True	AATAAA	-18	NA	120813198	120869803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_120813319_120825416_120825578_120839815_120839924_120842528_120842686_120847726_120847797_120853163_120853308_120863638
transcript_48417.nnic	chr6	-	2070	7	NIC	ENSMUSG00000004446.13	novel	2189	6	NA	NA	-11	-265	combination_of_known_splicesites	FALSE	canonical	3	32	junction_5	439.124507780348	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGGAGAGCTGTATCT	NA	False	NA	-26	True	AATAAA	-16	NA	120893825	120870079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120883389_120883525_120893694
transcript_48421.known	chr6	-	2189	6	FSM	ENSMUSG00000004446.13	ENSMUST00000004560.12	2189	6	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_5	85.8011654932496	407	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGTCACCAGTTATCATAA	NA	False	NA	NA	False	AGTAAA	-16	NA	120893814	120869814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893694
transcript_48422.nnic	chr6	-	1875	6	NNC	ENSMUSG00000004446.13	novel	2189	6	NA	NA	-44	-265	at_least_one_novel_splicesite	FALSE	canonical	3	75	junction_5	358.381137896514	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTGGGAGAGCTGTATCT	NA	False	NA	-26	True	AATAAA	-16	NA	120893858	120870079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_120871254_120872579_120872793_120874180_120874321_120877116_120877328_120878683_120878750_120893787
transcript_48427.nnic	chr6	+	1651	5	NNC	ENSMUSG00000030137.9	novel	2263	5	NA	NA	-8499	-756	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_1	2.06155281280883	51	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATGCCTCTTTCTTTGTGT	NA	False	NA	4	True	AATATA	-15	NA	121179155	121203057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_121179441_121197342_121197566_121198259_121198409_121199692_121200374_121202744
transcript_48428.known	chr6	+	2234	15	FSM	ENSMUSG00000030108.15	ENSMUST00000064580.14	2234	15	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	0.894997434724405	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGGTTTCTGTCCTCTG	6641	False	NA	NA	False	ATTAAA	-31	NA	121277185	121314692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_121277289_121279655_121279863_121295200_121295336_121298521_121298663_121301223_121301309_121301982_121302116_121303070_121303206_121309321_121309426_121310277_121310403_121311405_121311519_121311797_121311936_121312578_121312682_121312998_121313100_121313773_121313945_121314252
transcript_48435.known	chr6	+	2515	7	FSM	ENSMUSG00000007458.15	ENSMUST00000007602.15	2515	7	0	0	0	0	multi-exon	FALSE	canonical	3	1209	junction_5	55.6586820620906	1500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTTTGTCGTTTGTGCT	2664	False	NA	6	True	ATTAAA	-15	NA	122285678	122294639	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_122286126_122289192_122289373_122290217_122290385_122292015_122292126_122292262_122292394_122293008_122293136_122293286
transcript_4844.known	chr10	-	1118	4	FSM	ENSMUSG00000035478.15	ENSMUST00000142997.8	1118	4	0	0	0	0	multi-exon	FALSE	canonical	3	1197	junction_3	65.3214274866134	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGACTTGTCACTGTGTG	NA	False	NA	-4	True	AATAAA	-22	NA	80231004	80228372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80229115_80229726_80229905_80230399_80230491_80230897
transcript_48441.known	chr6	+	2976	6	FSM	ENSMUSG00000007458.15	ENSMUST00000123093.2	2976	6	0	0	0	0	multi-exon	FALSE	canonical	3	1209	junction_4	60.7466871524695	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTGGTTGCCTCAAGTT	2943	False	NA	11	True	ATTAAA	-18	NA	122285957	122293748	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_122286126_122289192_122289373_122290217_122292126_122292262_122292394_122293008_122293136_122293286
transcript_48448.known	chr6	-	3289	15	FSM	ENSMUSG00000040669.15	ENSMUST00000160163.8	3289	15	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_12	285.154952506134	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACACCTACCCTAATCCA	9122	False	NA	-11	True	AATAAA	-14	NA	122316571	122295261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311924_122312043_122313816_122313975_122316556
transcript_48450.nnic	chr6	-	3381	15	NNC	ENSMUSG00000040669.15	novel	3893	15	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	118	junction_14	273.877300100253	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACACCTACCCTAATCCA	9119	False	NA	-11	True	AATAAA	-14	NA	122316574	122295261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122309480_122309637_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316460
transcript_48454.known	chr6	-	3612	14	FSM	ENSMUSG00000040669.15	ENSMUST00000161054.8	3612	14	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_9	201.373802377627	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAGCTTCACAAAACAGGAG	9089	False	NA	-131	True	NA	NA	NA	122316604	122294808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316556
transcript_48456.nnic	chr6	-	3225	14	NNC	ENSMUSG00000040669.15	novel	3612	14	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	118	junction_13	297.259673702081	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCACACCTACCCTAATCCA	9119	False	NA	-11	True	AATAAA	-14	NA	122316574	122295261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816_122313975_122316460
transcript_48458.known	chr6	-	3683	13	FSM	ENSMUSG00000040669.15	ENSMUST00000081849.10	3683	13	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_9	201.860702108052	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCTTACTGCATTCTGCT	9596	False	NA	-12	True	ATTAAA	-41	NA	122313974	122294689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_122295607_122296275_122296508_122296859_122297011_122297173_122297283_122297896_122298012_122298830_122299043_122299283_122299432_122299966_122300773_122302416_122302910_122310249_122310400_122311028_122311110_122311931_122312043_122313816
transcript_4846.known	chr10	-	605	3	FSM	ENSMUSG00000020163.13	ENSMUST00000141683.2	605	3	0	0	0	0	multi-exon	FALSE	canonical	2	31	junction_2	2065	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGCCTGGCTCCTTCCTCAT	NA	False	NA	-2	True	ATTAAA	-20	NA	80242629	80238831	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80238990_80239969_80240121_80242333
transcript_48461.known	chr6	-	4725	6	FSM	ENSMUSG00000040649.16	ENSMUST00000068242.9	4725	6	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_5	43.1907397482377	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCACTGCTTTCTTTTGTTT	9240	False	NA	NA	False	AATATA	-21	NA	122463464	122430059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_122433623_122436050_122436255_122437919_122438007_122440936_122441168_122449497_122449723_122463049
transcript_48467.nnic	chr6	+	505	2	Genic_Genomic	ENSMUSG00000055093.11	novel	471	1	NA	NA	-42	47	multi-exon	FALSE	canonical	2	52	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTGCTTCACAATGCAG	NA	False	NA	3	True	AATAAA	-29	NA	122433820	122434380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr6_+_122433911_122433965
transcript_48468.nnic	chr6	+	510	2	Genic_Genomic	ENSMUSG00000055093.11	novel	471	1	NA	NA	-42	47	multi-exon	FALSE	canonical	3	216	junction_1	0	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGCTGCTTCACAATGCAG	NA	False	NA	3	True	AATAAA	-29	NA	122433820	122434380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr6_+_122434002_122434051
transcript_4847.known	chr10	-	445	3	FSM	ENSMUSG00000020163.13	ENSMUST00000020372.6	445	3	0	0	0	0	multi-exon	FALSE	canonical	3	4161	junction_1	104.5	2429	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGCTCCTTCCTCATC	NA	False	NA	-1	True	ATTAAA	-21	NA	80242664	80238830	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80238990_80239969_80240121_80242529
transcript_48470.known	chr6	+	471	1	FSM	ENSMUSG00000055093.11	ENSMUST00000119780.2	471	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26034	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGTGTATGCGTTAATAAAA	NA	False	NA	-44	True	NA	NA	NA	122433862	122434333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_122433900_122434300
transcript_48471.known	chr6	+	1506	10	FSM	ENSMUSG00000030116.15	ENSMUST00000148517.8	1506	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	61.5529481998934	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCTCACGGGCATGTTT	NA	False	NA	NA	False	TTTAAA	-10	NA	122490541	122506249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_122490692_122491299_122491360_122492306_122492343_122497537_122497571_122497854_122497888_122498851_122498888_122501445_122501470_122502909_122502998_122503745_122503820_122505277
transcript_48475.nic	chr6	+	599	5	ISM	ENSMUSG00000030116.15	ENSMUST00000142896.8	425	9	8154	-294	-669	0	3prime_fragment	FALSE	canonical	3	18	junction_1	53.3479146733966	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	7062	False	NA	4	True	AATACA	-15	NA	122498788	122505591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_122498888_122501445_122501470_122502909_122502998_122503745_122503820_122505277
transcript_48476.nic	chr6	+	1257	5	ISM	ENSMUSG00000030116.15	ENSMUST00000148517.8	1506	10	8247	0	-669	0	3prime_fragment	FALSE	canonical	3	18	junction_1	53.3479146733966	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCTCACGGGCATGTTT	7062	False	NA	NA	False	TTTAAA	-10	NA	122498788	122506249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_122498888_122501445_122501470_122502909_122502998_122503745_122503820_122505277
transcript_48479.nnic	chr6	+	574	5	NNC	ENSMUSG00000030116.15	novel	2491	4	NA	NA	318	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_1	33.0331273118365	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACGGGTTTGCTGATTTCT	8049	False	NA	4	True	AATACA	-15	NA	122499775	122505591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_122499850_122501445_122501470_122502909_122502998_122503745_122503820_122505277
transcript_48480.nnic	chr6	+	1232	5	NNC	ENSMUSG00000030116.15	novel	2491	4	NA	NA	318	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_1	33.0331273118365	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGCTCACGGGCATGTTT	8049	False	NA	NA	False	TTTAAA	-10	NA	122499775	122506249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_122499850_122501445_122501470_122502909_122502998_122503745_122503820_122505277
transcript_48483.known	chr6	-	2127	8	FSM	ENSMUSG00000040613.15	ENSMUST00000112585.8	2127	8	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	6.10453160549186	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATTGTTTTTGTGTTTGT	8724	False	NA	NA	False	AGTAAA	-12	NA	122579330	122554759	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_122555895_122557646_122557766_122558311_122558710_122565103_122565132_122568045_122568164_122573590_122573737_122577016_122577085_122579215
transcript_48484.known	chr6	-	2265	8	FSM	ENSMUSG00000040613.15	ENSMUST00000112586.8	2265	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	14.3099793921613	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTTTGTGGTGTTTTT	8651	False	NA	NA	False	AGTAAA	-21	NA	122579403	122554750	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_122555895_122557646_122557766_122558311_122558710_122565103_122565132_122568045_122568220_122573590_122573737_122577016_122577085_122579215
transcript_48494.known	chr6	-	2125	2	FSM	ENSMUSG00000030117.6	ENSMUST00000032211.5	2125	2	0	0	0	0	multi-exon	FALSE	canonical	3	704	junction_1	0	631	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCAAGATTTTGTTAAGGTG	9980	False	NA	NA	False	NA	NA	NA	122587046	122582361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_122584095_122586654
transcript_48496.nnic	chr6	+	905	5	NNC	ENSMUSG00000046323.9	novel	833	4	NA	NA	-197	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	872.536675446941	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCGACTCTTTGTAATTTA	483	False	NA	24	True	AATAAA	-14	NA	122603171	122607231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_122603291_122603415_122603570_122605535_122605769_122606259_122606296_122606868
transcript_48497.known	chr6	+	833	4	FSM	ENSMUSG00000046323.9	ENSMUST00000049644.9	833	4	0	0	0	0	multi-exon	FALSE	canonical	3	943	junction_3	656.420766141826	1007	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCGACTCTTTGTAATTTA	680	False	NA	24	True	AATAAA	-14	NA	122603368	122607231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_122603570_122605535_122605769_122606259_122606296_122606868
transcript_4850.known	chr10	-	520	3	FSM	ENSMUSG00000020163.13	ENSMUST00000138428.8	520	3	0	0	0	0	multi-exon	FALSE	canonical	1	12	junction_2	2074.5	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGCTCCTTCCTCATC	NA	False	NA	-1	True	ATTAAA	-21	NA	80242600	80238830	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80238990_80239969_80240121_80242390
transcript_48500.known	chr6	+	691	4	FSM	ENSMUSG00000046323.9	ENSMUST00000123429.2	691	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	513.829413975754	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCGACTCTTTGTAATTTA	1023	False	NA	24	True	AATAAA	-14	NA	122603711	122607231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_122603771_122605535_122605769_122606259_122606296_122606868
transcript_48504.known	chr6	+	1995	5	FSM	ENSMUSG00000012396.13	ENSMUST00000112581.8	1995	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	1913.25775837967	319	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684447	122691592	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_122684476_122684770_122684893_122688496_122688763_122689587_122689675_122690100
transcript_48505.known	chr6	+	2011	5	FSM	ENSMUSG00000012396.13	ENSMUST00000112580.8	2011	5	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_1	1758.10842953442	326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684523	122691592	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_122684568_122684770_122684893_122688496_122688763_122689587_122689675_122690100
transcript_48507.known	chr6	+	2211	4	FSM	ENSMUSG00000012396.13	ENSMUST00000012540.5	2211	4	0	0	0	0	multi-exon	FALSE	canonical	3	4116	junction_3	205.443152450718	1343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTTATCTTTTGTCCA	NA	False	NA	18	True	AATAAA	-19	NA	122684526	122691592	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_122684893_122688496_122688763_122689587_122689675_122690100
transcript_4851.known	chr10	-	5250	15	FSM	ENSMUSG00000047417.19	ENSMUST00000057910.16	5250	15	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_13	35.2049393566022	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACAAAGCCCAGGTCTGT	9421	False	NA	NA	False	AATAAA	-14	NA	80397394	80376758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80378316_80378398_80378659_80378741_80378858_80379134_80379246_80379480_80379555_80379836_80379951_80380116_80380255_80380593_80380708_80381296_80381421_80381709_80381842_80382135_80382300_80383606_80383821_80384265_80384368_80385166_80386900_80397097
transcript_48512.known	chr6	-	3959	10	FSM	ENSMUSG00000003153.11	ENSMUST00000032476.11	3959	10	0	0	0	0	multi-exon	FALSE	canonical	3	8407	junction_1	739.604699221896	784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTATTTTTCCCCCTCTTG	9816	False	NA	-4	True	AATAAA	-29	NA	122719704	122704767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_122707100_122708351_122708556_122709329_122709432_122709728_122709834_122712381_122712570_122713537_122713701_122714016_122714258_122716791_122716953_122717346_122717440_122719334
transcript_48516.nic	chr6	-	1271	3	ISM	ENSMUSG00000003153.11	ENSMUST00000168801.2	418	4	217	-748	42	689	3prime_fragment	FALSE	canonical	3	10026	junction_1	359.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCTTGCCATGTGGAAAAT	9858	False	NA	NA	False	NA	NA	NA	122719662	122716102	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_122716953_122717346_122717440_122719334
transcript_48519.known	chr6	+	2476	8	FSM	ENSMUSG00000030327.9	ENSMUST00000032477.6	2476	8	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_7	29.158959137102	293	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGTTTTTCATCTTTTA	788	False	NA	9	True	ATTAAA	-15	NA	122851432	122865900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_122851623_122857371_122857473_122857616_122857722_122858459_122858542_122859226_122859336_122859772_122859957_122863710_122863814_122864298
transcript_4852.known	chr10	-	1468	5	FSM	ENSMUSG00000003346.15	ENSMUST00000003436.12	1468	5	0	0	0	0	multi-exon	TRUE	canonical	3	337	junction_4	42.7631558704453	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGTTGCTTGGCTCCTTTGT	7798	False	NA	-5	True	ATTAAA	-15	NA	80426175	80419487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80419898_80419976_80420157_80421441_80421637_80422348_80422865_80426008
transcript_48524.known	chr6	+	1558	6	FSM	ENSMUSG00000049037.9	ENSMUST00000060484.9	1558	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	6.56048778674269	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTGTGTGTAAACTAGGAAA	NA	False	NA	NA	False	NA	NA	NA	122898806	122911578	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_122899039_122901675_122901790_122904922_122905025_122907635_122907788_122909107_122909224_122910736
transcript_48525.known	chr6	-	3139	16	FSM	ENSMUSG00000005069.13	ENSMUST00000035861.6	3139	16	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_9	30.6939009504422	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGACTGACGTGGGTAGGT	NA	False	NA	-16	True	AATAAA	-29	NA	124391996	124373790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381091_124381203_124381588_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391931
transcript_48526.known	chr6	-	3073	15	FSM	ENSMUSG00000005069.13	ENSMUST00000080557.12	3073	15	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_8	13.6099078555564	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTTCCGCTGCTGACGTT	NA	False	NA	-1	True	AATAAA	-44	NA	124392026	124373775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124375130_124375302_124375461_124375739_124375906_124376206_124376414_124376817_124376889_124377046_124377191_124380074_124380195_124380770_124380867_124381588_124381680_124382125_124382232_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391931
transcript_48529.nnic	chr6	-	775	6	NNC	ENSMUSG00000005069.13	novel	3148	16	NA	NA	11	-1434	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	49.0306026885251	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGTGTATATTTTCCCA	NA	False	NA	NA	False	AATAAA	-20	NA	124392015	124382705	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_124382932_124390227_124390360_124390527_124390661_124390965_124391002_124391245_124391410_124391931
transcript_48530.nic	chr6	-	2448	8	ISM	ENSMUSG00000008153.13	ENSMUST00000112523.8	3703	18	12529	0	-43	0	3prime_fragment	FALSE	canonical	3	22	junction_7	10.5211157940126	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTGCTTGCTGTTTACC	9210	False	NA	NA	False	AATAAA	-15	NA	124427174	124407717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_124408692_124408916_124409120_124413776_124413913_124414333_124414480_124415228_124415400_124415717_124415945_124426448_124426598_124426732
transcript_48531.known	chr6	-	2906	12	FSM	ENSMUSG00000038521.18	ENSMUST00000162443.8	2906	12	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	4.09797369803078	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCTGGTCTGCTTTTTTT	NA	False	NA	NA	False	AGTAAA	-14	NA	124519318	124507306	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124508700_124509499_124509575_124510232_124510362_124510854_124510934_124511316_124511433_124512191_124512346_124513290_124513491_124514319_124514446_124517279_124517458_124517747_124517956_124518291_124518448_124519226
transcript_48532.known	chr6	-	2946	12	FSM	ENSMUSG00000038521.18	ENSMUST00000160505.8	2946	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_11	4.65859199102507	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGTCTGCTTTTTTTGGT	NA	False	NA	NA	False	AGTAAA	-17	NA	124519280	124507303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124508700_124509499_124509575_124510232_124510362_124510854_124510934_124511316_124511433_124512191_124512346_124513290_124513491_124514319_124514446_124517279_124517458_124517747_124517956_124518291_124518448_124519151
transcript_48534.known	chr6	+	2281	13	FSM	ENSMUSG00000004270.14	ENSMUST00000004381.14	2281	13	0	0	0	0	multi-exon	TRUE	canonical	3	738	junction_2	58.4776785524946	308	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTATACAGTGTTGTCTC	NA	False	NA	NA	False	AATAAA	-25	NA	124639989	124681381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_124640323_124675032_124675141_124676201_124676309_124676969_124677064_124677203_124677242_124677635_124677815_124678431_124678541_124679198_124679286_124679374_124679542_124679968_124680117_124680189_124680349_124680457_124680591_124680762
transcript_48547.known	chr6	-	1034	6	FSM	ENSMUSG00000004268.12	ENSMUST00000004379.8	1034	6	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_5	105.298433036774	1039	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTTCAGACCTGATT	NA	False	NA	-14	True	TATAAA	-19	NA	124689141	124681343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124681622_124681901_124682052_124682120_124682180_124682477_124682620_124682703_124682806_124688838
transcript_48554.nic	chr6	-	1378	5	NIC	ENSMUSG00000004268.12	novel	1034	6	NA	NA	-46	0	intron_retention	FALSE	canonical	3	1245	junction_4	117.50957407803	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTTTTCAGACCTGATT	NA	False	NA	-14	True	TATAAA	-19	NA	124689187	124681343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_124681622_124681901_124682052_124682120_124682620_124682703_124682806_124688838
transcript_48556.known	chr6	-	917	5	FSM	ENSMUSG00000004268.12	ENSMUST00000142187.8	917	5	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_4	110.261904119238	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCAAGACTGCAGAGTGGGG	NA	False	NA	-91	True	NA	NA	NA	124689032	124681420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124681622_124681901_124682180_124682477_124682620_124682703_124682806_124688838
transcript_48565.known	chr6	-	1074	3	FSM	ENSMUSG00000004268.12	ENSMUST00000141251.2	1074	3	0	0	0	0	multi-exon	FALSE	canonical	3	1245	junction_2	29.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATGGCAAGGTACAGTC	NA	False	NA	NA	False	NA	NA	NA	124689104	124681913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124682620_124682703_124682806_124688838
transcript_48571.known	chr6	+	1318	10	FSM	ENSMUSG00000004264.18	ENSMUST00000004375.16	1318	10	0	0	0	0	multi-exon	FALSE	canonical	1	924	junction_9	595.782978965236	1904	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCTGAGTGTGTAC	NA	False	NA	24	True	AATAAA	-25	NA	124689298	124693913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_124689527_124689666_124689752_124690024_124690105_124690946_124691132_124691792_124691923_124692022_124692127_124692544_124692623_124692916_124692994_124693387_124693394_124693568
transcript_48581.known	chr6	-	2219	16	FSM	ENSMUSG00000004266.16	ENSMUST00000112484.10	2219	16	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_10	22.1017847444248	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGTGCCCCTTGTATC	8730	False	NA	0	True	AATAAA	-28	NA	124710117	124697669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124697872_124698042_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124709908
transcript_48582.known	chr6	-	2226	16	FSM	ENSMUSG00000004266.16	ENSMUST00000171549.9	2226	16	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_15	37.1732281203676	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGTGCCCCTTGTATC	8920	False	NA	0	True	AATAAA	-28	NA	124715677	124697669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124697872_124698042_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124715461
transcript_48583.nic	chr6	-	2387	15	NIC	ENSMUSG00000004266.16	novel	2219	16	NA	NA	3	0	intron_retention	FALSE	canonical	3	99	junction_9	22.8728740508695	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGTGCCCCTTGTATC	8733	False	NA	0	True	AATAAA	-28	NA	124710114	124697669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_124698186_124698538_124698631_124698725_124698878_124698973_124699042_124701919_124702075_124702189_124702322_124704347_124704498_124704678_124704759_124705074_124705172_124705299_124705414_124705510_124705628_124705743_124705934_124709262_124709458_124709700_124709824_124709908
transcript_48588.known	chr6	-	863	3	FSM	ENSMUSG00000072772.4	ENSMUST00000004389.6	863	3	0	0	0	0	multi-exon	FALSE	canonical	3	807	junction_1	71.5	686	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTCAGTCATTTGT	8943	False	NA	NA	False	AATAAA	-17	NA	124718337	124716145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124716377_124717481_124717659_124717882
transcript_48590.known	chr6	-	1656	2	FSM	ENSMUSG00000072772.4	ENSMUST00000140423.2	1656	2	0	0	0	0	multi-exon	FALSE	canonical	3	950	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACCTTTGTGTCAGTCATT	9252	False	NA	NA	False	AATAAA	-14	NA	124718028	124716148	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124717659_124717882
transcript_48591.known	chr6	-	2795	12	FSM	ENSMUSG00000004267.17	ENSMUST00000004378.15	2795	12	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_11	8.77449346328266	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTGGCTGAACTAAGGAT	9866	False	NA	-3	True	NA	NA	NA	124746636	124737017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124738326_124738610_124738670_124739615_124739725_124739967_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200_124745301_124746399
transcript_48594.nic	chr6	-	2283	11	ISM	ENSMUSG00000004267.17	ENSMUST00000004378.15	2795	12	1301	310	4	0	3prime_fragment	FALSE	canonical	3	37	junction_5	7.92779919019144	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCCCTTGTCTGAGGAC	8680	False	NA	-6	True	ATTAAA	-17	NA	124745335	124737327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_124738326_124738610_124738670_124739615_124739725_124739967_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200
transcript_48596.known	chr6	-	2491	10	FSM	ENSMUSG00000004267.17	ENSMUST00000125436.8	2491	10	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	8.26565107262102	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCACCCCTTGTCTGAGGAC	8715	False	NA	-6	True	ATTAAA	-17	NA	124745300	124737327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124738326_124738610_124738670_124739615_124740170_124740689_124740888_124743067_124743291_124743493_124743628_124743995_124744066_124744502_124744562_124744663_124744760_124745200
transcript_4860.nic	chr10	+	1801	7	NIC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	-22	1	combination_of_known_junctions	FALSE	canonical	3	31	junction_3	238.087285581477	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	14	True	AATAAA	-14	NA	80438683	80451618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_80438784_80444636_80444685_80445163_80445259_80445474_80445632_80446861_80446964_80448175_80448294_80450437
transcript_48601.known	chr6	+	1213	3	FSM	ENSMUSG00000038451.14	ENSMUST00000047760.10	1213	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	16	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTTCATTATTGTTTTT	NA	False	NA	19	True	AGTAAA	-22	NA	124785623	124787582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_124785743_124786189_124786933_124787231
transcript_48603.known	chr6	+	882	3	FSM	ENSMUSG00000038451.14	ENSMUST00000143040.8	882	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	13	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGGTCAAATATCCACTCT	NA	False	NA	NA	False	NA	NA	NA	124785847	124787299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_124785919_124786189_124786933_124787231
transcript_48605.known	chr6	+	1219	3	FSM	ENSMUSG00000038451.14	ENSMUST00000052727.5	1219	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	6.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTTTCATTATTGTTTTT	NA	False	NA	19	True	AGTAAA	-22	NA	124785868	124787582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_124785994_124786189_124786933_124787231
transcript_48606.known	chr6	-	691	1	FSM	ENSMUSG00000023456.17	ENSMUST00000204602.2	691	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTAAAAAAAAAAAAAATT	NA	False	NA	NA	False	NA	NA	NA	124791117	124790426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124790400_124791100
transcript_48608.known	chr6	-	3213	20	FSM	ENSMUSG00000038429.11	ENSMUST00000047510.10	3213	20	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_5	195.368477767687	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGTTTCAGTTCTTTGGGG	7856	False	NA	-8	True	AATAAA	-15	NA	124806447	124791981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795437_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
transcript_48610.nic	chr6	-	3066	20	NIC	ENSMUSG00000038429.11	novel	3076	20	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_16	192.331489002841	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGTACGGGGGCTGAC	7861	False	NA	-27	True	AATACA	-9	NA	124806442	124792000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801611_124801814_124801949_124802074_124802142_124803261_124803388_124806247
transcript_48611.known	chr6	-	3076	20	FSM	ENSMUSG00000038429.11	ENSMUST00000122110.8	3076	20	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_16	54.5472424788812	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAGTACGGGGGCTGAC	7905	False	NA	-27	True	AATACA	-9	NA	124806398	124792000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124792623_124793946_124794032_124794280_124794435_124794629_124794776_124794850_124794995_124795506_124795630_124796335_124796425_124796949_124797125_124797374_124797529_124798039_124798166_124798283_124798372_124798848_124798921_124799488_124799683_124800415_124800511_124801094_124801280_124801518_124801665_124801814_124801949_124802074_124802142_124803261_124803388_124806247
transcript_48618.known	chr6	+	1976	6	FSM	ENSMUSG00000023505.14	ENSMUST00000024270.14	1976	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	347.474660946665	777	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTTGTCTTGTCTTGCCT	815	False	NA	39	True	NA	NA	NA	124806650	124810664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_124807237_124807465_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
transcript_4862.known	chr10	+	1804	7	FSM	ENSMUSG00000113949.2	ENSMUST00000079883.12	1804	7	0	0	0	0	multi-exon	FALSE	canonical	3	584	junction_5	41.6239781322684	321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGGCCTTTATCTGTGG	NA	False	NA	13	True	AATAAA	-13	NA	80438713	80451617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80438784_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
transcript_48625.nic	chr6	+	1210	6	NIC	ENSMUSG00000023505.14	novel	1976	6	NA	NA	-47	-254	intron_retention	FALSE	canonical	0	0	junction_3	431.365552634885	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATGCTTTAAGAAGTTAGA	1297	False	NA	29	True	ATTAAA	-16	NA	124807132	124810241	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_124807237_124807326_124807614_124808324_124808452_124809108_124809403_124809528_124809633_124809947
transcript_48628.known	chr6	+	1917	5	FSM	ENSMUSG00000023505.14	ENSMUST00000134637.8	1917	5	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_1	91.4969261778777	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGATTCATGATCTTTCCC	1362	False	NA	NA	False	CATAAA	-25	NA	124807197	124810495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_124807237_124807465_124807614_124808324_124809403_124809528_124809633_124809947
transcript_4863.nnic	chr10	+	1773	7	NNC	ENSMUSG00000113949.2	novel	1804	7	NA	NA	-22	1	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	232.090260219788	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGGCCTTTATCTGTGGA	NA	False	NA	14	True	AATAAA	-14	NA	80438683	80451618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_80438784_80444636_80444685_80445225_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
transcript_48630.known	chr6	-	2850	15	FSM	ENSMUSG00000023191.10	ENSMUST00000023958.10	2850	15	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_14	4.42396073348629	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTGGTCTGCTCTATCCC	5483	False	NA	NA	False	AATAAA	-27	NA	124834715	124818051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124818803_124819034_124819176_124821978_124822055_124822164_124822283_124822470_124822622_124822904_124823007_124827588_124827714_124827880_124827949_124828041_124828095_124830013_124830104_124831273_124831411_124831810_124831943_124832043_124832240_124832906_124833060_124834158
transcript_48633.known	chr6	-	2676	5	FSM	ENSMUSG00000038390.12	ENSMUST00000046893.10	2676	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	3.56195171219375	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGATGTTCAGCGTTTGC	NA	False	NA	0	True	ATTAAA	-21	NA	124840880	124835406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124836184_124836454_124836613_124836985_124837176_124837781_124839086_124840633
transcript_48634.known	chr6	-	2001	8	FSM	ENSMUSG00000030124.3	ENSMUST00000032217.2	2001	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_5	4.83186700722507	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAAGCTGGAGTCTGTCT	NA	False	NA	NA	False	AATAAA	-18	NA	124888668	124881323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124881564_124881800_124881932_124882218_124882456_124885339_124885616_124886188_124886453_124887066_124887360_124887726_124887875_124888256
transcript_48635.nic	chr6	-	577	2	ISM	ENSMUSG00000030124.3	ENSMUST00000032217.2	2001	8	6531	0	4877	0	3prime_fragment	FALSE	canonical	3	14	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCAAGCTGGAGTCTGTCT	6067	False	NA	NA	False	AATAAA	-18	NA	124882137	124881323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_124881564_124881800
transcript_48636.nic	chr6	-	1018	5	NIC	ENSMUSG00000030122.13	novel	1149	5	NA	NA	-86	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	272.08764672436	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTCTCCTGCTTTCCCGC	NA	False	NA	-6	True	AATAAA	-26	NA	124892578	124890643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124892322
transcript_48637.nnic	chr6	-	898	5	NNC	ENSMUSG00000030122.13	novel	1149	5	NA	NA	-78	0	at_least_one_novel_splicesite	FALSE	canonical	2	16	junction_4	274.15232991897	54	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCGTCTCCTGCTTTCCCGC	NA	False	NA	-6	True	AATAAA	-26	NA	124892570	124890643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124892434
transcript_48640.known	chr6	-	744	5	FSM	ENSMUSG00000030122.13	ENSMUST00000204671.3	744	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	276.631975736718	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGTTGGGGCCAAGCCC	8034	False	NA	-44	True	NA	NA	NA	124897066	124890726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124891196_124891370_124891430_124891597_124891677_124891880_124891953_124897001
transcript_48646.known	chr6	+	1475	9	FSM	ENSMUSG00000030120.15	ENSMUST00000180095.4	1475	9	0	0	0	0	multi-exon	FALSE	canonical	3	3449	junction_8	252.103029533562	2261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGATTCTGGCTGTACTT	NA	False	NA	27	True	AATAAA	-17	NA	124908394	124913108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912585
transcript_48647.known	chr6	+	1451	9	FSM	ENSMUSG00000030120.15	ENSMUST00000032214.14	1451	9	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_8	1260.71298651795	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAAGATTCTGGCTGTACT	NA	False	NA	26	True	AATAAA	-16	NA	124908438	124913107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_124908550_124909061_124909140_124909373_124909501_124909739_124909776_124910916_124910971_124911253_124911383_124911548_124911709_124912195_124912409_124912564
transcript_4866.known	chr10	+	1271	7	FSM	ENSMUSG00000113949.2	ENSMUST00000180350.3	1271	7	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	236.742945453972	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGCCCTGCTCCCACCTGTT	NA	False	NA	NA	False	NA	NA	NA	80438790	80450797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80439148_80444636_80444685_80445163_80445293_80445474_80445632_80446861_80446964_80448175_80448294_80450437
transcript_48661.known	chr6	-	1328	8	FSM	ENSMUSG00000030127.16	ENSMUST00000112439.9	1328	8	0	0	0	0	multi-exon	FALSE	canonical	3	371	junction_1	503.213915644191	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATGTATGCCAGGAGAT	NA	False	NA	-16	True	ATTAAA	-13	NA	124942501	124935375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124935736_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
transcript_48674.nic	chr6	-	1727	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	167	junction_7	583.751379843669	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942255	124935778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942181
transcript_48676.known	chr6	-	1817	8	FSM	ENSMUSG00000030127.16	ENSMUST00000032220.15	1817	8	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_7	625.057254520393	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942411	124935778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942247
transcript_48678.nic	chr6	-	1814	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	1123	junction_1	272.823034517369	561	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942525	124935778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
transcript_48687.nic	chr6	-	1752	8	NIC	ENSMUSG00000030127.16	novel	1817	8	NA	NA	-24	-62	combination_of_known_junctions	FALSE	canonical	3	1123	junction_1	272.823034517369	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGGTCTATATATATTGACA	NA	False	NA	-17	True	NA	NA	NA	124942525	124935840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_124936601_124936761_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
transcript_48694.known	chr6	-	795	7	FSM	ENSMUSG00000030127.16	ENSMUST00000129976.8	795	7	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_6	612.067443633098	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGCAGCCACCTCCCAGG	NA	False	NA	NA	False	ATTAAA	-18	NA	124942253	124936869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942181
transcript_48697.nic	chr6	-	1975	7	ISM	ENSMUSG00000030127.16	ENSMUST00000112439.9	1328	8	-24	403	-24	0	5prime_fragment	FALSE	canonical	3	1332	junction_6	190.502333027417	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCAGGAACTGGGCCTCTT	NA	False	NA	-9	True	AATAAA	-26	NA	124942525	124935778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_124936914_124937053_124937160_124938120_124938324_124939320_124939410_124939584_124939661_124941686_124941892_124942364
transcript_4871.known	chr10	+	639	6	FSM	ENSMUSG00000113949.2	ENSMUST00000220669.2	639	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	267.140113049314	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCCACTGGCCTTAGGCGG	NA	False	NA	NA	False	NA	NA	NA	80438705	80450601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80438784_80444636_80444685_80445163_80445293_80446861_80446964_80448175_80448294_80450437
transcript_48710.known	chr6	-	486	2	FSM	ENSMUSG00000030127.16	ENSMUST00000149346.2	486	2	0	0	0	0	multi-exon	FALSE	canonical	3	1332	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAGGGTCTGTAAACTTA	NA	False	NA	NA	False	AATAAA	-33	NA	124942475	124941516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_124941892_124942364
transcript_48711.known	chr6	+	2250	6	FSM	ENSMUSG00000030329.12	ENSMUST00000032479.11	2250	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	10.6094297678999	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTTGCCTGTTTTGCCT	8030	False	NA	16	True	AATAAA	-16	NA	124973656	124980059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_124973903_124975880_124975941_124976197_124976704_124977616_124977699_124978389_124978612_124978925
transcript_48712.nic	chr6	+	2107	6	NIC	ENSMUSG00000030329.12	novel	1116	6	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	17.7245592328836	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTAGTTGCCTGTTTTGCCT	9902	False	NA	16	True	AATAAA	-16	NA	124975528	124980059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_124975632_124975880_124975941_124976197_124976704_124977616_124977699_124978389_124978612_124978925
transcript_48713.known	chr6	+	1116	6	FSM	ENSMUSG00000030329.12	ENSMUST00000160704.8	1116	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	17.3505043154371	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCCAAGCGTTTGTCCTC	9946	False	NA	NA	False	NA	NA	NA	124975572	124979106	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_124975638_124975880_124975941_124976197_124976704_124977616_124977699_124978389_124978612_124978925
transcript_48721.known	chr6	+	1629	8	FSM	ENSMUSG00000030330.16	ENSMUST00000032480.14	1629	8	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_4	19.3527933964298	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGTGTGTGCGGTGATAG	7107	False	NA	6	True	AATAAA	-16	NA	125016798	125026227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024551_125024755_125024904_125025138_125025201_125025330
transcript_48724.known	chr6	+	1487	8	FSM	ENSMUSG00000030330.16	ENSMUST00000112417.9	1487	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	61.5119036099053	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7132	False	NA	7	True	AATAAA	-17	NA	125016823	125026228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024280_125024444_125024551_125024864_125024904_125025138_125025201_125025330
transcript_48726.nic	chr6	+	1592	7	ISM	ENSMUSG00000108037.3	ENSMUST00000140883.7	3181	10	-29	2497	0	-2497	5prime_fragment	FALSE	canonical	3	91	junction_4	20.4857674170793	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTTTATTGTAG	7087	False	NA	8	True	AATAAA	-15	NA	125016778	125025965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024904_125025138_125025201_125025330
transcript_48727.nic	chr6	+	1933	7	ISM	ENSMUSG00000108037.3	ENSMUST00000140883.7	3181	10	-107	2234	-78	-2234	5prime_fragment	FALSE	canonical	3	91	junction_4	20.4857674170793	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7009	False	NA	7	True	AATAAA	-17	NA	125016700	125026228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_125016861_125020916_125020989_125023866_125024034_125024173_125024289_125024444_125024904_125025138_125025201_125025330
transcript_48731.nnic	chr6	+	1220	7	NIC	ENSMUSG00000030330.16	novel	1446	8	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_2	40.4533338826632	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTTTATTGTAG	7087	False	NA	8	True	AATAAA	-15	NA	125016778	125025965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_125016861_125020916_125020989_125024173_125024289_125024444_125024551_125024755_125024904_125025138_125025201_125025330
transcript_48732.nnic	chr6	+	1463	7	NIC	ENSMUSG00000030330.16	novel	1629	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	33	junction_2	40.4533338826632	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTGTGCGGTGATAGT	7107	False	NA	7	True	AATAAA	-17	NA	125016798	125026228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_+_125016861_125020916_125020989_125024173_125024289_125024444_125024551_125024755_125024904_125025138_125025201_125025330
transcript_48739.known	chr6	+	584	4	FSM	ENSMUSG00000072770.10	ENSMUST00000032481.8	584	4	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_3	54.0514158515349	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCATTTTGGAGAGTATT	NA	False	NA	NA	False	NA	NA	NA	125026929	125028510	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_125027016_125027396_125027613_125027809_125027905_125028323
transcript_48740.known	chr6	+	1883	10	FSM	ENSMUSG00000072770.10	ENSMUST00000088294.12	1883	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	45.7669890199324	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCACGTGCTCTGCTTAGT	NA	False	NA	NA	False	AATAAA	-14	NA	125026921	125040230	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_125027016_125027396_125027613_125027809_125027905_125028205_125028324_125030452_125030916_125031635_125031769_125037772_125037953_125038048_125038217_125039398_125039483_125039898
transcript_48741.nic	chr6	+	1402	8	ISM	ENSMUSG00000063870.13	ENSMUST00000112392.8	6652	39	-6	28292	-6	1773	5prime_fragment	FALSE	canonical	3	200	junction_3	15.8384703446117	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGGTGTGTTTCTTTTCT	1602	False	NA	NA	False	AAAAAG	-6	NA	125072937	125079256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077761_125077957_125078180_125078300_125078415_125078658_125078844_125078973_125079125
transcript_48743.nic	chr6	+	552	4	ISM	ENSMUSG00000063870.13	ENSMUST00000112392.8	6652	39	127	29689	-54	376	5prime_fragment	FALSE	canonical	3	200	junction_3	2.16024689946929	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGAAAAAGAAGCTCG	1735	False	NA	NA	False	NA	NA	NA	125073070	125077859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_125073224_125074049_125074229_125077430_125077553_125077761
transcript_48744.nic	chr6	+	401	3	ISM	ENSMUSG00000063870.13	ENSMUST00000112390.8	6537	39	-70	30071	-70	0	5prime_fragment	FALSE	canonical	3	201	junction_1	2	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAGAAGAAAAAGCCTAA	1719	False	NA	NA	False	NA	NA	NA	125073054	125077483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_125073224_125074049_125074229_125077430
transcript_48746.known	chr6	+	2597	16	FSM	ENSMUSG00000038279.11	ENSMUST00000044200.11	2597	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	206.283558885983	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5437	False	NA	25	True	AATATA	-17	NA	125108871	125121716	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
transcript_48748.nnic	chr6	+	2659	16	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	267.552229584348	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5401	False	NA	25	True	AATATA	-17	NA	125108835	125121716	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_125108993_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116910_125117497_125117638_125117752_125117843_125117998_125118122_125118236_125118466_125120963
transcript_48752.nnic	chr6	+	2396	15	NNC	ENSMUSG00000038279.11	novel	2597	16	NA	NA	-79	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_7	284.942538066888	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCTGTTGTGTTTTTTGA	5358	False	NA	25	True	AATATA	-17	NA	125108792	125121716	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_125108967_125109170_125109282_125110481_125110528_125110676_125110766_125111509_125111695_125113875_125113932_125114017_125114179_125114273_125114474_125114597_125114688_125116602_125116691_125116768_125116801_125117783_125117843_125117998_125118122_125118236_125118466_125120963
transcript_48756.known	chr6	+	2840	9	FSM	ENSMUSG00000038271.18	ENSMUST00000119527.8	2840	9	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	15.028618532653	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTGAGCCTGCTTCACCT	8227	False	NA	11	True	AATAAA	-18	NA	125122203	125138745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_125122993_125126551_125126613_125126703_125126800_125128347_125128489_125129576_125129735_125130004_125130126_125130372_125130466_125136024_125136156_125137495
transcript_48759.nic	chr6	-	1463	7	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	1	204	junction_5	3916.70276933715	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCCTTGGTTTTAATGC	NA	False	NA	-15	True	AATAAA	-15	NA	125142604	125138815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142059_125142275_125142514
transcript_4876.known	chr10	+	1411	2	FSM	ENSMUSG00000113640.2	ENSMUST00000038411.5	1411	2	0	0	0	0	multi-exon	TRUE	canonical	3	56	junction_1	0	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCGTTTGCACTCAGGT	NA	False	NA	3	True	AATAAA	-15	NA	80438713	80443488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80438784_80442147
transcript_48760.nic	chr6	-	1369	7	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	245	junction_5	3903.40606251629	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCCTTGGTTTTAATGC	NA	False	NA	-15	True	AATAAA	-15	NA	125142568	125138815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142117_125142275_125142514
transcript_48763.known	chr6	-	1420	7	FSM	ENSMUSG00000057666.19	ENSMUST00000118875.8	1420	7	0	0	0	0	multi-exon	FALSE	canonical	3	6089	junction_1	1931.60920967179	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTCCTTGGTTTTAATG	NA	False	NA	-16	True	AATAAA	-14	NA	125142736	125138816	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142514
transcript_48765.nic	chr6	-	1249	6	NIC	ENSMUSG00000057666.19	novel	1273	7	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	832	junction_5	4068.19726168729	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCCTTGGTTTTAATGC	NA	False	NA	-15	True	AATAAA	-15	NA	125141906	125138815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_125139065_125139174_125139357_125139440_125139672_125139805_125140004_125140101_125140400_125141815
transcript_48768.nic	chr6	-	1387	6	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	6089	junction_1	1692.66445582106	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCCTTGGTTTTAATGC	NA	False	NA	-15	True	AATAAA	-15	NA	125142568	125138815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_125139065_125139174_125139357_125139440_125140004_125140101_125140400_125142233_125142275_125142514
transcript_48769.nic	chr6	-	1337	6	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	6089	junction_1	1950.20942465162	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCCTTGGTTTTAATGC	NA	False	NA	-15	True	AATAAA	-15	NA	125142568	125138815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_125139065_125139174_125139672_125139805_125140004_125140101_125140400_125142233_125142275_125142514
transcript_4877.nic	chr10	+	1887	11	ISM	ENSMUSG00000003345.17	ENSMUST00000085435.7	1825	12	4825	-404	86	0	3prime_fragment	FALSE	canonical	3	537	junction_3	60.3762370473682	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGAATGTTGGCCTGGG	NA	False	NA	9	True	GGGGCT	-36	NA	80470314	80476575	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_80470476_80473721_80473763_80473843_80473914_80473994_80474144_80474227_80474463_80474539_80474626_80474713_80474799_80474918_80475068_80475413_80475498_80475601_80475709_80475855
transcript_48773.nic	chr6	-	1471	5	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	6089	junction_1	1441.13000367767	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCCTTGGTTTTAATGC	NA	False	NA	-15	True	AATAAA	-15	NA	125142568	125138815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_125139065_125139174_125140004_125140101_125140400_125142233_125142275_125142514
transcript_48774.nic	chr6	-	1569	4	NIC	ENSMUSG00000057666.19	novel	1420	7	NA	NA	0	0	intron_retention	FALSE	canonical	3	6089	junction_1	1492.21602546906	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCCTTGGTTTTAATGC	NA	False	NA	-15	True	AATAAA	-15	NA	125142568	125138815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_125139065_125139174_125140400_125142233_125142275_125142514
transcript_48776.known	chr6	-	4629	32	FSM	ENSMUSG00000038252.14	ENSMUST00000043848.11	4629	32	0	0	0	0	multi-exon	TRUE	canonical	3	436	junction_21	78.9640126675822	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCATCCTGTCCTGGCTGGTC	3395	False	NA	-9	True	AATAAA	-20	NA	125168664	125144969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_125145283_125145552_125145712_125145825_125145953_125146777_125146962_125147096_125147178_125147689_125147785_125147878_125148057_125148360_125148517_125148598_125148723_125148795_125148911_125149952_125150126_125150322_125150488_125150563_125150649_125150742_125150876_125151187_125151322_125153105_125153191_125153614_125153790_125154290_125154516_125154771_125154888_125156200_125156376_125156475_125156564_125156657_125156793_125157941_125158140_125160876_125161025_125161191_125161316_125161397_125161526_125162656_125162800_125163062_125163245_125163716_125163776_125164039_125164116_125166725_125166872_125168460
transcript_48777.known	chr6	+	855	3	FSM	ENSMUSG00000030335.7	ENSMUST00000136804.2	855	3	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	333	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTCTGCCTCGTTCCTAAG	NA	False	NA	49	True	NA	NA	NA	125168763	125170521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_125169172_125169478_125169590_125170185
transcript_48778.known	chr6	+	3427	3	FSM	ENSMUSG00000030335.7	ENSMUST00000032485.7	3427	3	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_1	10	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTCTGGGTTTTCTTCT	NA	False	NA	NA	False	ACTAAA	-15	NA	125169127	125173232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_125169397_125169478_125169590_125170185
transcript_48779.known	chr6	+	580	2	FSM	ENSMUSG00000030335.7	ENSMUST00000144380.2	580	2	0	0	0	0	multi-exon	FALSE	canonical	3	716	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACATTTCTGGCTGCAAAGT	NA	False	NA	NA	False	NA	NA	NA	125169179	125169841	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_125169397_125169478
transcript_4878.known	chr10	-	2682	4	FSM	ENSMUSG00000003348.11	ENSMUST00000003438.11	2682	4	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	9.97775303139718	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCGGGCTGCTCCTTGTTG	9117	False	NA	-1	True	AATAAA	-16	NA	80537689	80521086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80523008_80525685_80525889_80526902_80527402_80537630
transcript_48780.known	chr6	+	3011	4	FSM	ENSMUSG00000030337.17	ENSMUST00000100942.9	3011	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACATTGACTTGATTGTT	350	False	NA	NA	False	AATACA	-11	NA	125192543	125199126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_125192691_125195536_125195664_125195873_125196033_125196548
transcript_48785.known	chr6	-	1509	5	FSM	ENSMUSG00000067702.6	ENSMUST00000088246.6	1509	5	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_2	43.4453679924569	984	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCATTTCCTCTCTAGTGT	3461	False	NA	-8	True	AATAAA	-28	NA	125263005	125255236	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_125255618_125257932_125258614_125259315_125259465_125259718_125259942_125262930
transcript_48789.known	chr6	-	2107	10	FSM	ENSMUSG00000030339.8	ENSMUST00000032489.8	2107	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	2.62936879248872	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGGGTTTTATGTGG	NA	False	NA	0	True	AATAAA	-21	NA	125290848	125283533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_125284435_125284892_125285110_125286156_125286183_125286421_125286530_125289005_125289086_125289232_125289330_125289714_125289874_125289956_125290083_125290352_125290450_125290552
transcript_48791.known	chr6	+	2156	10	FSM	ENSMUSG00000030341.18	ENSMUST00000032491.15	2156	10	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_1	4.54062594260057	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGCTGACCCTGGAAAGAGTG	3776	False	NA	15	True	AATACA	-20	NA	125326685	125339447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_125327026_125333787_125333942_125334275_125334405_125334683_125334834_125335016_125335096_125337459_125337537_125337672_125337787_125338054_125338084_125338261_125338548_125338649
transcript_48793.nic	chr6	-	1314	5	ISM	ENSMUSG00000038167.7	ENSMUST00000042647.7	3299	17	10052	0	10052	0	3prime_fragment	FALSE	canonical	2	4	junction_4	2.48746859276655	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACATGGTTGTTTGGTG	3707	False	NA	NA	False	TATAAA	-8	NA	125347704	125339622	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_125339831_125340004_125340683_125341546_125341699_125347343_125347460_125347544
transcript_48796.known	chr6	-	1228	8	FSM	ENSMUSG00000030342.9	ENSMUST00000032492.9	1228	8	0	0	0	0	multi-exon	FALSE	canonical	3	5197	junction_4	437.363109779412	2878	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCGGGCTGATTGCTGGTA	9966	False	NA	-10	True	AATAAA	-15	NA	125471754	125437228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_125437690_125438188_125438273_125439076_125439167_125439289_125439389_125440647_125440723_125441352_125441451_125449371_125449475_125471536
transcript_488.nnic	chr1	-	1493	10	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	-13365	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_9	102.591723488764	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	4301	False	NA	-2	True	AATAAA	-18	NA	33675770	33492890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33675612
transcript_4880.known	chr10	+	1196	10	FSM	ENSMUSG00000055862.8	ENSMUST00000218184.2	1196	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_9	7.62711213410245	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCATGAGGAACAATTCTTT	NA	False	NA	2	True	ATTAAA	-15	NA	80538259	80541207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80538794_80538882_80538964_80539042_80539115_80539563_80539591_80539686_80539763_80539872_80539921_80540013_80540029_80540251_80540270_80540532_80540548_80540897
transcript_48808.nic	chr6	-	1098	5	ISM	ENSMUSG00000030345.17	ENSMUST00000078521.7	2252	15	36414	0	-41	0	3prime_fragment	FALSE	canonical	2	4	junction_4	3.57071421427143	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGTGGCTGTCAATCTATG	NA	False	NA	-12	True	AATAAA	-17	NA	126862388	126852982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_126853514_126854122_126854302_126857187_126857318_126860989_126861051_126862191
transcript_48812.known	chr6	-	2233	9	FSM	ENSMUSG00000030346.17	ENSMUST00000112220.8	2233	9	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_4	57.8721651573535	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGGAGGGACTTGGGTT	5265	False	NA	NA	False	TATAAA	-11	NA	126916550	126900012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904651_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
transcript_48813.known	chr6	-	1871	9	FSM	ENSMUSG00000030346.17	ENSMUST00000112221.8	1871	9	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	48.7748334184751	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCATGCCTCGCCTAGTT	5265	False	NA	-5	True	AATAAA	-21	NA	126916550	126900377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126904654_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
transcript_48815.nnic	chr6	-	1953	9	NNC	ENSMUSG00000030346.17	novel	2233	9	NA	NA	-33	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	89.7349395441932	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCATGCCTCGCCTAGTT	5232	False	NA	-5	True	AATAAA	-21	NA	126916583	126900377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_126901304_126901880_126902083_126903321_126903481_126904500_126904651_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
transcript_48816.nnic	chr6	-	1927	9	NNC	ENSMUSG00000030346.17	novel	1871	9	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	85.1909619619358	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCATGCCTCGCCTAGTT	5261	False	NA	-5	True	AATAAA	-21	NA	126916554	126900377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_126901304_126901880_126902083_126903321_126903481_126904500_126904654_126905103_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
transcript_48822.nic	chr6	-	2331	8	NIC	ENSMUSG00000030346.17	novel	1871	9	NA	NA	-10	0	intron_retention	FALSE	canonical	3	195	junction_2	26.1635359277927	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCATGCCTCGCCTAGTT	5255	False	NA	-5	True	AATAAA	-21	NA	126916560	126900377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_126901304_126901880_126902031_126903321_126903481_126904500_126905191_126906955_126907066_126911676_126911813_126912915_126912972_126916456
transcript_48829.known	chr6	+	2501	14	FSM	ENSMUSG00000030347.7	ENSMUST00000032497.7	2501	14	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_10	14.682034265643	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTACCGCCATCTCACCTTC	NA	False	NA	NA	False	NA	NA	NA	126916928	126952930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_126916990_126919274_126919470_126921754_126921901_126923439_126923622_126927020_126927121_126927237_126927360_126931697_126931805_126932097_126932296_126932811_126932941_126938928_126939004_126943842_126944046_126950518_126950577_126951449_126951518_126952073
transcript_4883.known	chr10	-	4805	31	FSM	ENSMUSG00000020198.9	ENSMUST00000020420.9	4805	31	0	0	0	0	multi-exon	FALSE	canonical	1	82	junction_14	55.4957555934586	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTGTGTTGTGTCCCCAT	9208	False	NA	-2	True	ATTAAA	-14	NA	80578098	80542789	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80543818_80544291_80544372_80544580_80544703_80545034_80545121_80545233_80545323_80545600_80545791_80546253_80546302_80546522_80546667_80547945_80548042_80548429_80548502_80548598_80548765_80549390_80549465_80549806_80549995_80550080_80550157_80550941_80551014_80551704_80551847_80552307_80552454_80553532_80553765_80554842_80555223_80555500_80555647_80556953_80557003_80557424_80557475_80558746_80558797_80559366_80559441_80559524_80559665_80562887_80563018_80563715_80563824_80565811_80565893_80566707_80566789_80568684_80568781_80577729
transcript_48835.known	chr6	-	3651	6	FSM	ENSMUSG00000038028.10	ENSMUST00000039913.9	3651	6	0	0	0	0	multi-exon	FALSE	canonical	3	974	junction_4	62.3903838744401	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTAGGTCTGTTCAGTGT	NA	False	NA	NA	False	AATAAA	-22	NA	127086513	127062078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_127065266_127066155_127066267_127068146_127068225_127069583_127069706_127078811_127078850_127086398
transcript_4884.nnic	chr10	+	2051	9	NNC	ENSMUSG00000020211.16	novel	2213	9	NA	NA	108	0	at_least_one_novel_splicesite	FALSE	canonical	3	103	junction_1	429.244230450451	23	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTGTCTGCTGTGTGTTT	4460	False	NA	29	True	ATTAAA	-17	NA	80634139	80640758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_80634586_80637029_80637193_80637289_80637362_80638231_80638279_80638625_80638736_80639293_80639344_80639416_80639558_80639653_80639723_80639805
transcript_48847.known	chr6	+	3746	9	FSM	ENSMUSG00000037997.13	ENSMUST00000039680.7	3746	9	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	10.4403065089106	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGTGCTTCTGGTTTCT	NA	False	NA	33	True	ATTAAA	-38	NA	127430685	127471224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_127430786_127444994_127445116_127447664_127447794_127448510_127448632_127451198_127451275_127454806_127454880_127454961_127455093_127466888_127467041_127468381
transcript_48852.known	chr6	+	1725	7	FSM	ENSMUSG00000037997.13	ENSMUST00000112193.8	1725	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	10.0443461155462	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTGATTTCTGGTATTT	NA	False	NA	NA	False	AATAAA	-13	NA	127430637	127456018	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_127430786_127444994_127445116_127447664_127447794_127448510_127448632_127451198_127451275_127454806_127454880_127454961
transcript_48856.known	chr6	-	1405	9	FSM	ENSMUSG00000030352.16	ENSMUST00000032503.12	1405	9	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_5	10.9971587239614	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTAGCTCTCTGATTTAT	6166	False	NA	NA	False	NA	NA	NA	128120523	127940869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_127941463_127942200_127942285_127942661_127942794_127943344_127943447_127943691_127943767_127944043_127944236_128011128_128011209_128060344_128060445_128120476
transcript_48860.nnic	chr6	-	1057	4	NNC	ENSMUSG00000056771.8	novel	2346	2	NA	NA	-22	-1672	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.69967317119759	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGGTGTCAGTGGCTC	NA	False	NA	NA	False	AAAAAG	-11	NA	128177608	128166452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_128166683_128167505_128167762_128176569_128176675_128177142
transcript_48861.known	chr6	-	3076	12	FSM	ENSMUSG00000030353.16	ENSMUST00000006311.13	3076	12	0	0	0	0	multi-exon	TRUE	canonical	3	52	junction_4	17.0405447474327	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACCGTGAGAACTTCAACTC	1357	False	NA	-7	True	NA	NA	NA	128277776	128204105	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_128205443_128205530_128205684_128207554_128207696_128219363_128219538_128220332_128220473_128223283_128223340_128223780_128223825_128224922_128225052_128228502_128228566_128228884_128228950_128247830_128248086_128277257
transcript_48862.known	chr6	-	1909	11	FSM	ENSMUSG00000030353.16	ENSMUST00000112157.4	1909	11	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_7	24.4991836598692	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGAGGAGCTAGTTTGGC	1357	False	NA	-5	True	AATAAA	-19	NA	128277776	128205143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_128205443_128205530_128205684_128207554_128207696_128219363_128219538_128220332_128220473_128223283_128223340_128223780_128223825_128228502_128228566_128228884_128228950_128247830_128248086_128277257
transcript_48866.known	chr6	+	567	1	FSM	ENSMUSG00000053173.13	ENSMUST00000118863.2	567	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	39	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGATCTTAACTGTTAA	NA	False	NA	NA	False	NA	NA	NA	128290319	128290886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_128290300_128290900
transcript_48868.known	chr6	-	1053	2	FSM	ENSMUSG00000001521.13	ENSMUST00000157005.3	1053	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTGTTGTTTAATAAG	7517	False	NA	NA	False	CATAAA	-19	NA	128332788	128319203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_128320169_128332700
transcript_4887.nic	chr10	-	1168	6	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	211	junction_2	375.955529285047	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634404	80631932	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_80632357_80632424_80632453_80632565_80632657_80633606_80633674_80633743_80633812_80633914
transcript_48871.nic	chr6	-	1671	4	NIC	ENSMUSG00000048668.17	novel	2015	4	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_2	133.417473451652	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGCCTGTCTCAGTGGTC	403	False	NA	NA	False	CATAAA	-34	NA	128339902	128333962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_128335157_128336068_128336318_128339020_128339148_128339801
transcript_48872.nic	chr6	-	1311	4	NIC	ENSMUSG00000048668.17	novel	2015	4	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_2	133.417473451652	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCTCGTGCCCATCTA	403	False	NA	-7	True	AATAAA	-41	NA	128339902	128334322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_128335157_128336068_128336318_128339020_128339148_128339801
transcript_48876.known	chr6	-	1108	3	FSM	ENSMUSG00000048668.17	ENSMUST00000112151.2	1108	3	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_2	100.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTAATGCAGCCTCGTGCCC	474	False	NA	-12	True	AATAAA	-36	NA	128339831	128334327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_128335157_128336068_128336318_128339801
transcript_48877.known	chr6	-	1584	3	FSM	ENSMUSG00000048668.17	ENSMUST00000057421.15	1584	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	149.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCCTCGTGCCCATCTA	474	False	NA	-7	True	AATAAA	-41	NA	128339831	128334322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_128335157_128336068_128336318_128339330
transcript_48879.known	chr6	-	2320	12	FSM	ENSMUSG00000001518.13	ENSMUST00000001559.11	2320	12	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_3	19.6628609101919	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCTCTCCAATCTGGAC	NA	False	NA	0	True	AATAAA	-24	NA	128401894	128386406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_128387381_128387455_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
transcript_4888.known	chr10	-	1260	6	FSM	ENSMUSG00000035278.10	ENSMUST00000036805.7	1260	6	0	0	0	0	multi-exon	FALSE	canonical	3	943	junction_2	140.821021158064	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634460	80631932	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633743_80633812_80633914
transcript_48881.nic	chr6	-	2150	11	NIC	ENSMUSG00000001518.13	novel	2320	12	NA	NA	0	0	intron_retention	FALSE	canonical	3	13	junction_8	79.0465685529739	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAGCTCTCCAATCTGGAC	NA	False	NA	0	True	AATAAA	-24	NA	128401893	128386406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_128387381_128387455_128387630_128388527_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128393219_128393262_128394579_128394676_128401680
transcript_48883.known	chr6	-	3191	10	FSM	ENSMUSG00000001518.13	ENSMUST00000142615.4	3191	10	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_1	20.4601389035025	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAAGGCTCCATAGCAAG	NA	False	NA	-89	True	NA	NA	NA	128401881	128386495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_128388646_128389661_128389754_128389919_128389974_128390065_128390164_128390487_128390637_128391107_128391248_128392858_128393028_128393219_128393262_128394579_128394676_128401680
transcript_48885.nic	chr6	-	802	4	ISM	ENSMUSG00000001518.13	ENSMUST00000203026.2	655	6	-17	1974	0	16	5prime_fragment	FALSE	canonical	3	279	junction_3	2.49443825784929	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATGACCTCTAAGAATAG	NA	False	NA	NA	False	NA	NA	NA	128401893	128392576	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_128393028_128393219_128393262_128394579_128394676_128401680
transcript_48886.nic	chr6	-	995	3	ISM	ENSMUSG00000001518.13	ENSMUST00000203853.3	724	7	-18	2606	0	17	5prime_fragment	FALSE	canonical	3	279	junction_2	3	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATGACCTCTAAGAATAGA	NA	False	NA	NA	False	NA	NA	NA	128401893	128392575	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_128393262_128394579_128394676_128401680
transcript_48888.known	chr6	-	2217	10	FSM	ENSMUSG00000030357.11	ENSMUST00000032508.11	2217	10	0	0	0	0	multi-exon	FALSE	canonical	3	5250	junction_7	195.172162050601	662	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGTGTCAGGCAACCCT	9269	False	NA	-21	True	AATAAA	-16	NA	128415640	128407065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410573_128410665_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
transcript_489.nnic	chr1	-	1625	10	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	-14687	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_9	101.707763399863	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	2979	False	NA	-2	True	AATAAA	-18	NA	33677092	33492890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33676802
transcript_48901.known	chr6	-	2678	9	FSM	ENSMUSG00000030357.11	ENSMUST00000139448.7	2678	9	0	0	0	0	multi-exon	FALSE	canonical	3	5250	junction_6	206.026697299161	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTTGTGAGTCACAAGTT	9269	False	NA	NA	False	NA	NA	NA	128415640	128406697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_128407844_128409384_128409625_128410068_128410255_128410488_128410757_128411267_128411425_128411714_128411836_128412676_128412820_128413532_128413678_128415368
transcript_48907.nic	chr6	-	690	7	NIC	ENSMUSG00000030359.15	novel	4681	36	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	1	3	junction_6	23.8799078725191	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTTTTTTTTCCTTTTT	NA	False	NA	5	True	AATAAA	-20	NA	128464850	128460529	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_128460690_128461826_128461869_128462520_128462624_128463080_128463150_128463855_128463947_128464365_128464497_128464756
transcript_48908.known	chr6	-	4681	36	FSM	ENSMUSG00000030359.15	ENSMUST00000112132.8	4681	36	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	19.0831905944815	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGTTTTTTTTTCCTTTTT	9646	False	NA	5	True	AATAAA	-20	NA	128503683	128460529	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_128460690_128461826_128461869_128462520_128462624_128463080_128463150_128463855_128463947_128464365_128464497_128464843_128465063_128465868_128466111_128466644_128466823_128466981_128467057_128467485_128467643_128468127_128468219_128468458_128468636_128469119_128469204_128471390_128471443_128471670_128471793_128472155_128472283_128472862_128473092_128473541_128473717_128475921_128476010_128479138_128479304_128480435_128480586_128483698_128483842_128487307_128487372_128489118_128489347_128490698_128490861_128493035_128493146_128493778_128493894_128496354_128496479_128498063_128498149_128498978_128499148_128499702_128499724_128500739_128500793_128500932_128501087_128502077_128502262_128503541
transcript_48911.known	chr6	+	907	5	FSM	ENSMUSG00000059659.8	ENSMUST00000204081.2	907	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	4.26468052730799	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAAATTGTTATTCACTT	NA	False	NA	NA	False	AATGAA	-14	NA	128416301	128480244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_128416351_128416477_128416660_128465853_128466007_128479128_128479327_128479919
transcript_48916.known	chr6	+	1820	4	FSM	ENSMUSG00000030161.9	ENSMUST00000032264.9	1820	4	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_2	5.71547606649408	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGGCCTCTTTCTTTTTC	NA	False	NA	34	True	AATAAA	-38	NA	129510122	129519309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_129510500_129514453_129514533_129515532_129515652_129518064
transcript_48917.known	chr6	-	561	6	FSM	ENSMUSG00000030188.13	ENSMUST00000173198.8	561	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	222.978563992147	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTGGTACAAGACTTGAA	NA	False	NA	NA	False	TTTAAA	-35	NA	131270114	131261663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_131261692_131262605_131262689_131264998_131265110_131266351_131266411_131268703_131268904_131270034
transcript_48918.known	chr6	-	767	5	FSM	ENSMUSG00000030188.13	ENSMUST00000032307.12	767	5	0	0	0	0	multi-exon	FALSE	canonical	2	356	junction_3	64.3059095262636	328	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGTAGAATAGGTATTTGC	NA	False	NA	NA	False	AATAAA	-16	NA	131270207	131261350	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_131261692_131262605_131262689_131264998_131265110_131266351_131266411_131270034
transcript_48921.known	chr6	+	5707	9	FSM	ENSMUSG00000030199.17	ENSMUST00000111963.8	5707	9	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	19.2418814048939	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGTCCCAAGTCTCTGTT	NA	False	NA	NA	False	AATAAA	-22	NA	134012662	134247121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_134013102_134043269_134043429_134114247_134114381_134199827_134199993_134210481_134210617_134225236_134225768_134238652_134238796_134239981_134240083_134243220
transcript_48922.known	chr6	+	1578	6	FSM	ENSMUSG00000030200.14	ENSMUST00000111960.2	1578	6	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_3	10	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAGTCTCTAACACTAT	NA	False	NA	5	True	GATAAA	-16	NA	134391390	134415078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_134391599_134400573_134401026_134404258_134404424_134407028_134407100_134409108_134409376_134414663
transcript_48927.nnic	chr6	-	1228	4	NNC	ENSMUSG00000107666.2	novel	1505	9	NA	NA	53515	-1029	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	4.54606056566195	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATGTGTAAAAATCAATTC	NA	False	NA	NA	False	AAAAAG	-6	NA	134326863	134286942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_134287767_134291473_134291617_134293190_134293294_134326705
transcript_48928.known	chr6	+	1764	4	FSM	ENSMUSG00000042992.16	ENSMUST00000062755.10	1764	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	6.37704215656966	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTTGATCTGATTCTAAT	NA	False	NA	31	True	ATTAAA	-32	NA	134617902	134688150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_134618221_134621291_134621436_134662926_134663085_134687006
transcript_48932.nic	chr6	-	1763	6	NIC	ENSMUSG00000032641.19	novel	2075	5	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	28.4422221354099	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAATTGATTTACTTAG	NA	False	NA	-18	True	ATTAAA	-17	NA	134874898	134846119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_134847407_134854179_134854298_134863853_134863900_134864592_134864749_134874124_134874177_134874794
transcript_48938.nic	chr6	-	1694	5	NIC	ENSMUSG00000032641.19	novel	1711	5	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_1	26.3664085533089	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCACTATTGATTATGGT	NA	False	NA	-18	True	ACTAAA	-19	NA	134874898	134846070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_134847407_134863853_134863900_134864592_134864749_134874124_134874177_134874794
transcript_48942.nnic	chr6	-	1684	5	NIC	ENSMUSG00000032641.19	novel	1610	4	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	26.7348087705897	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAATTGATTTACTTAG	NA	False	NA	-18	True	ATTAAA	-17	NA	134874898	134846119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_134847446_134863853_134863900_134864592_134864749_134874124_134874177_134874794
transcript_48946.nic	chr6	-	1967	4	NIC	ENSMUSG00000032641.19	novel	2075	5	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	2	13	junction_2	34.4512538072113	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTCCTGTGGATTTTGT	NA	False	NA	-3	True	ACTAAA	-34	NA	134874898	134846055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_134847407_134864592_134864749_134873820_134874177_134874794
transcript_48947.nic	chr6	-	1663	4	NIC	ENSMUSG00000032641.19	novel	2075	5	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_3	8.64098759787715	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTCCTGTGGATTTTGT	NA	False	NA	-3	True	ACTAAA	-34	NA	134874898	134846055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_134847407_134864592_134864749_134874124_134874177_134874794
transcript_4895.known	chr10	-	533	5	FSM	ENSMUSG00000035278.10	ENSMUST00000219378.2	533	5	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_4	475.904664822693	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTGTTGGACTGACCCTCT	NA	False	NA	NA	False	NA	NA	NA	80634128	80632259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633674_80633914
transcript_48950.known	chr6	-	1610	4	FSM	ENSMUSG00000032641.19	ENSMUST00000046255.14	1610	4	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	18.9267594221045	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCACTATTGATTATGGT	NA	False	NA	-18	True	ACTAAA	-19	NA	134874821	134846070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_134847446_134864592_134864749_134874124_134874177_134874794
transcript_48952.known	chr6	-	498	4	FSM	ENSMUSG00000032641.19	ENSMUST00000203762.4	498	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	13.9124245031395	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGCGCTTTGTGGTTGT	NA	False	NA	NA	False	NA	NA	NA	134864731	134847211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_134847407_134854179_134854298_134863853_134863900_134864592
transcript_48956.nic	chr6	-	1594	4	NIC	ENSMUSG00000032641.19	novel	1711	5	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_3	8.64098759787715	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTGAGAATTGATTTA	NA	False	NA	-23	True	ATTAAA	-12	NA	134874898	134846124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_134847407_134864592_134864749_134874124_134874177_134874794
transcript_48959.known	chr6	-	1647	3	FSM	ENSMUSG00000032641.19	ENSMUST00000066107.10	1647	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	2.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGAATTGATTTACTTAG	NA	False	NA	-18	True	ATTAAA	-17	NA	134864795	134846119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_134847446_134854179_134854298_134864592
transcript_4896.known	chr10	-	1261	5	FSM	ENSMUSG00000035278.10	ENSMUST00000219767.2	1261	5	0	0	0	0	multi-exon	FALSE	canonical	3	943	junction_2	144.890260197157	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCCATGTCGGAATGAGT	NA	False	NA	-6	True	AATAAA	-14	NA	80634394	80631935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80632357_80632424_80632489_80632565_80632657_80633606_80633812_80633914
transcript_48960.known	chr6	-	1484	3	FSM	ENSMUSG00000032641.19	ENSMUST00000215088.2	1484	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	14.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTGAGAATTGATTTA	NA	False	NA	-23	True	ATTAAA	-12	NA	134864748	134846124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_134847407_134863853_134863900_134864592
transcript_48963.nic	chr6	-	1713	2	ISM	ENSMUSG00000032641.19	ENSMUST00000165392.8	1643	4	9824	0	-159	0	3prime_fragment	FALSE	canonical	3	94	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTCCTGTGGATTTTGT	NA	False	NA	-3	True	ACTAAA	-34	NA	134864954	134846055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_134847407_134864592
transcript_48964.nic	chr6	-	1665	2	ISM	ENSMUSG00000032641.19	ENSMUST00000046255.14	1610	4	9939	0	-87	0	3prime_fragment	FALSE	canonical	3	36	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCACTATTGATTATGGT	NA	False	NA	-18	True	ACTAAA	-19	NA	134864882	134846070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_134847446_134864592
transcript_48966.nic	chr6	-	1644	2	ISM	ENSMUSG00000032641.19	ENSMUST00000111932.8	1711	5	9872	0	-159	0	3prime_fragment	FALSE	canonical	3	94	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGTGAGAATTGATTTA	NA	False	NA	-23	True	ATTAAA	-12	NA	134864954	134846124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_134847407_134864592
transcript_48967.known	chr6	-	610	2	FSM	ENSMUSG00000032641.19	ENSMUST00000152140.3	610	2	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATCTTCTCTATTTTTAT	NA	False	NA	NA	False	NA	NA	NA	134874888	134873660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_134874177_134874794
transcript_48968.known	chr6	+	2393	3	FSM	ENSMUSG00000003031.15	ENSMUST00000003115.9	2393	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	1.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTGAGTGCAACTGTCC	NA	False	NA	13	True	AATAAA	-18	NA	134897363	134902476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_134898358_134898918_134899047_134901205
transcript_48969.known	chr6	+	5662	2	FSM	ENSMUSG00000098318.8	ENSMUST00000183867.7	5662	2	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_1	0	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCGGCTCACCCCTTGTTT	7965	False	NA	NA	False	NA	NA	NA	134906054	134933761	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_134906224_134928268
transcript_4897.nic	chr10	-	1306	5	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	31	0	intron_retention	FALSE	canonical	3	953	junction_4	141.850934082226	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634429	80631932	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_80632357_80632424_80632657_80633606_80633674_80633743_80633812_80633914
transcript_48970.known	chr6	+	544	2	FSM	ENSMUSG00000098318.8	ENSMUST00000184504.2	544	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGGTACCAGGAGATAAAG	8028	False	NA	NA	False	NA	NA	NA	134906117	134928681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_134906249_134928268
transcript_48974.known	chr6	+	1764	12	FSM	ENSMUSG00000030204.11	ENSMUST00000032326.11	1764	12	0	0	0	0	multi-exon	TRUE	canonical	3	485	junction_5	30.2182146373304	324	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTCTGTGTGTGCACT	6574	False	NA	20	True	ATTAAA	-20	NA	134988574	135000739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_134988692_134989264_134989359_134992157_134992347_134992538_134992611_134992784_134992904_134993544_134993617_134994083_134994201_134995013_134995161_134995936_134996075_134997578_134997650_134998411_134998542_135000241
transcript_48983.known	chr6	+	2083	4	FSM	ENSMUSG00000046733.8	ENSMUST00000050104.8	2083	4	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	5.71547606649408	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATTTATTTATTT	NA	False	NA	32	True	AATAAA	-32	NA	135042648	135061707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_135042774_135055543_135056483_135060440_135060497_135060744
transcript_48985.known	chr6	+	4221	13	FSM	ENSMUSG00000030207.16	ENSMUST00000111915.8	4221	13	0	0	0	0	multi-exon	TRUE	canonical	3	64	junction_6	10.7558123821495	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGTGTCCTTTTCTCAT	NA	False	NA	NA	False	AATAAA	-20	NA	135174974	135213240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_135175100_135186030_135186430_135188832_135188932_135193883_135194076_135195676_135195808_135202137_135202286_135202653_135202796_135203847_135203992_135204150_135204233_135205410_135205567_135208618_135208737_135210253_135210475_135210976
transcript_48992.known	chr6	-	1058	4	FSM	ENSMUSG00000042770.9	ENSMUST00000045855.9	1058	4	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_1	18.8738502225228	650	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGACAGTTTTAAATTATT	NA	False	NA	-29	True	AATACA	-20	NA	135145213	135114519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_135115062_135129818_135130000_135132148_135132288_135145017
transcript_48994.known	chr6	-	1279	1	FSM	ENSMUSG00000047104.6	ENSMUST00000050471.4	1279	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTGTTGTTGATCTTA	NA	False	NA	NA	False	ATTAAA	-34	NA	135287403	135286124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_135286100_135287400
transcript_48995.known	chr6	+	1573	2	FSM	ENSMUSG00000094973.3	ENSMUST00000204530.2	1573	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAACAAAAAAGTAAATAGCA	NA	False	NA	NA	False	ATTAAA	-41	NA	136304536	136306981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_136304647_136305518
transcript_48998.known	chr6	-	2010	11	FSM	ENSMUSG00000030214.8	ENSMUST00000032336.7	2010	11	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	4.98497743224581	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGGTCCTGCGTTTAGC	NA	False	NA	0	True	AATAAA	-17	NA	136638926	136589067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_136589347_136589734_136589842_136590789_136590976_136593924_136594066_136594199_136594401_136611428_136611574_136612489_136612631_136617114_136617254_136618128_136618213_136628728_136628949_136638559
transcript_49.known	ERCC-00145	+	1024	1	FSM	ERCC-00145A	DQ875386	1024	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	128	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00145_+_0_1000
transcript_490.nnic	chr1	-	1422	10	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	-14729	0	at_least_one_novel_splicesite	FALSE	canonical	3	64	junction_9	88.3062851670253	74	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	2937	False	NA	-2	True	AATAAA	-18	NA	33677134	33492890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33667475_33667614_33669418_33669515_33677047
transcript_4900.nnic	chr10	-	1069	4	NIC	ENSMUSG00000035278.10	novel	1260	6	NA	NA	-10	0	combination_of_known_splicesites	FALSE	canonical	3	46	junction_3	509.183878596153	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80634404	80631932	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_80632357_80632424_80632489_80632565_80632657_80633914
transcript_49001.known	chr6	+	1831	1	FSM	ENSMUSG00000060032.7	ENSMUST00000074556.7	1831	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGACAGTGTTTGATT	NA	False	NA	NA	False	AATAAA	-19	NA	136785241	136787072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_136785200_136787100
transcript_49003.known	chr6	-	2739	12	FSM	ENSMUSG00000030216.13	ENSMUST00000116514.4	2739	12	0	0	0	0	multi-exon	FALSE	canonical	3	1089	junction_11	207.479880534104	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCTGTGTTTGTGTAATG	2832	False	NA	-1	True	AATAAA	-19	NA	136805231	136790651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_136791640_136793048_136793232_136793941_136794236_136794927_136795030_136797504_136797697_136798174_136798375_136798526_136798661_136799791_136799989_136801327_136801422_136802513_136802546_136802998_136803108_136805017
transcript_49006.nic	chr6	-	293	3	ISM	ENSMUSG00000030216.13	ENSMUST00000151333.2	2339	7	-28	5788	-28	0	5prime_fragment	FALSE	canonical	3	1089	junction_2	347	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTACGAATTTAGAAACATTC	2894	False	NA	6	True	AAAAAG	-14	NA	136805169	136802513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_-_136802546_136802998_136803108_136805017
transcript_49007.known	chr6	-	1153	6	FSM	ENSMUSG00000030220.14	ENSMUST00000111892.8	1153	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	4.60434577328853	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGAGTTGTCTTATGC	5824	False	NA	NA	False	AATAAA	-20	NA	136918501	136900652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_136901325_136903669_136903734_136906609_136906687_136909257_136909342_136910581_136910772_136918435
transcript_49008.known	chr6	-	1193	6	FSM	ENSMUSG00000030220.14	ENSMUST00000032344.12	1193	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	3.18747549010185	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGTGAGTTGTCTTATGC	5571	False	NA	NA	False	AATAAA	-20	NA	136918754	136900652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_136901325_136903669_136903734_136906609_136906687_136909257_136909342_136910581_136910772_136918648
transcript_49010.known	chr6	-	2262	5	FSM	ENSMUSG00000030222.14	ENSMUST00000117919.8	2262	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	7.44983221287567	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTGTTGGAATTCTTT	NA	False	NA	-12	True	AATAAA	-14	NA	137146730	137031828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_137033539_137034810_137034885_137043996_137044054_137141932_137142101_137146477
transcript_49011.known	chr6	-	890	4	FSM	ENSMUSG00000030222.14	ENSMUST00000119610.4	890	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	25.7725090401036	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTGGCTCTCCTGCTG	NA	False	NA	NA	False	NA	NA	NA	137146683	137033096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_137033539_137034810_137034885_137141932_137142101_137146477
transcript_49012.known	chr6	-	4567	22	FSM	ENSMUSG00000015766.15	ENSMUST00000058210.13	4567	22	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_13	15.9268452335348	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCTGGTTGAAAATTAGCAT	3998	False	NA	NA	False	AATAAA	-18	NA	137626283	137454242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_137456128_137459149_137459280_137460539_137460721_137467214_137467438_137476579_137476724_137477532_137477642_137482385_137482520_137486079_137486261_137489146_137489296_137491275_137491351_137491700_137491790_137494068_137494196_137496440_137496515_137499150_137499288_137499827_137499911_137504085_137504236_137504365_137504528_137505522_137505591_137514615_137514693_137516319_137516400_137568415_137568491_137626049
transcript_49013.known	chr6	-	3560	21	FSM	ENSMUSG00000015766.15	ENSMUST00000111878.8	3560	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	34.6389953664941	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGCTTATTGTGTAAAA	3998	False	NA	-83	True	NA	NA	NA	137626283	137455174	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_137456128_137459149_137459280_137460539_137460721_137467214_137467438_137476579_137476724_137477532_137477642_137482385_137482520_137486079_137486261_137489146_137489296_137491275_137491351_137491700_137491790_137494068_137494196_137496440_137496515_137499150_137499288_137499827_137499911_137504085_137504236_137504365_137504528_137505522_137505591_137514615_137514693_137516319_137516400_137626049
transcript_49015.known	chr6	+	2650	10	FSM	ENSMUSG00000030224.11	ENSMUST00000064910.7	2650	10	0	0	0	0	multi-exon	FALSE	canonical	3	757	junction_9	58.2073772423402	286	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCGCTTGGATTCCTGAAGT	NA	False	NA	23	True	AATAAA	-26	NA	137712075	137728930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_137712465_137713327_137713464_137716355_137716438_137716752_137716826_137718300_137718398_137718949_137719088_137722504_137722642_137725684_137725835_137726361_137726428_137727548
transcript_49018.known	chr6	+	1729	9	FSM	ENSMUSG00000030225.12	ENSMUST00000087675.9	1729	9	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_6	37.3511629671688	306	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTATTTTGTTTATTTTC	NA	False	NA	20	True	AATACA	-20	NA	137731555	137814892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_137731637_137755121_137755220_137756507_137756656_137757727_137757824_137759926_137760062_137773751_137773881_137807190_137807304_137813731_137813882_137814113
transcript_49023.known	chr6	+	1167	4	FSM	ENSMUSG00000008540.12	ENSMUST00000008684.11	1167	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.24721912892465	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTTGTTTTTTCTCTTT	2214	False	NA	NA	False	ATTAAA	-17	NA	138117313	138133753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_138117605_138124656_138124814_138127765_138127861_138133129
transcript_49025.nnic	chr6	+	444	4	NNC	ENSMUSG00000030231.12	novel	2902	21	NA	NA	14	-78051	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	45.3063645271464	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTATTATTTCTAATTAGTAT	NA	False	NA	NA	False	NA	NA	NA	140369793	140420704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_140369983_140370102_140370183_140372223_140372282_140420587
transcript_49029.known	chr6	+	5932	8	FSM	ENSMUSG00000030232.19	ENSMUST00000032359.15	5932	8	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	98.0522559554811	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTGATGACTGTGGTTC	NA	False	NA	8	True	NA	NA	NA	140568388	140601207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_140568785_140579414_140579623_140583385_140583494_140587897_140588085_140589673_140589799_140592535_140592604_140593697_140593812_140596481
transcript_49030.known	chr6	-	213	1	FSM	ENSMUSG00000080921.5	ENSMUST00000117356.2	213	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2826	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGCCCTCTGCGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	140692898	140692685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_140692700_140692900
transcript_49032.known	chr6	-	3389	15	FSM	ENSMUSG00000030243.17	ENSMUST00000111803.9	3389	15	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_14	18.9118524546197	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAGGAGACCTATCTTA	6180	False	NA	NA	False	AATAAA	-26	NA	142332813	142307101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332747
transcript_49038.known	chr6	+	2831	12	FSM	ENSMUSG00000041671.14	ENSMUST00000041852.8	2831	12	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_5	7.76088944378656	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGCCGTAGTAATAGACTCC	NA	False	NA	NA	False	NA	NA	NA	142291379	142308983	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_142291534_142293283_142293365_142294248_142294369_142296787_142296917_142299250_142299325_142300350_142300512_142302208_142302310_142303105_142303239_142304124_142304238_142304761_142304885_142306584_142306723_142307479
transcript_49040.known	chr6	-	2112	16	FSM	ENSMUSG00000030243.17	ENSMUST00000032370.13	2112	16	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_1	39.7130820875047	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGAGTCTAAAGTTACATTT	6231	False	NA	NA	False	TTTAAA	-16	NA	142332762	142296067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_142296272_142308531_142308596_142309272_142309403_142310161_142310382_142311241_142311334_142312392_142312532_142312999_142313118_142313206_142313356_142314198_142314281_142315016_142315184_142318541_142318741_142320545_142320653_142322506_142322687_142323878_142324077_142330254_142330303_142332747
transcript_49041.nnic	chr6	+	1061	6	NNC	ENSMUSG00000030245.11	novel	2818	5	NA	NA	-1	426	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_4	283.233190145505	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATTTTGGAGCCAGATAAAA	NA	False	NA	75	True	AATAAA	-27	NA	142332945	142347862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_142333096_142338055_142338148_142339653_142339729_142339832_142339901_142341913_142341996_142347268
transcript_49043.known	chr6	+	2818	5	FSM	ENSMUSG00000030245.11	ENSMUST00000032372.7	2818	5	0	0	0	0	multi-exon	FALSE	canonical	3	520	junction_3	45.9911676303179	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTGGTCAAGTTTATCTT	NA	False	NA	25	True	AATAAA	-19	NA	142332946	142349584	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_142333096_142338055_142338148_142339653_142339833_142341913_142341996_142347268
transcript_49046.known	chr6	+	367	3	FSM	ENSMUSG00000030245.11	ENSMUST00000146508.2	367	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	306	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCCCAACAGCTGTGGCA	NA	False	NA	NA	False	TTTAAA	-15	NA	142332978	142347436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_142333096_142341913_142341996_142347268
transcript_49047.known	chr6	-	1287	8	FSM	ENSMUSG00000030246.13	ENSMUST00000239397.2	1287	8	0	0	0	0	multi-exon	FALSE	canonical	3	685	junction_1	65.6636450839754	800	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATACTTCTGCCTGCCTTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	142453669	142435977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_142436331_142438218_142438343_142439825_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
transcript_49050.nic	chr6	-	1180	7	NIC	ENSMUSG00000030246.13	novel	1304	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	308.522104376476	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGCCTGCCTTTTTCTC	NA	False	NA	-4	True	AATAAA	-19	NA	142453683	142435974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_142436331_142439825_142439944_142441293_142441468_142444230_142444405_142447065_142447184_142451137_142451273_142453578
transcript_49051.known	chr6	+	1760	8	FSM	ENSMUSG00000030282.15	ENSMUST00000032419.9	1760	8	0	0	0	0	multi-exon	FALSE	canonical	3	681	junction_7	54.6573743554204	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCTGTACTGTAAGACCT	NA	False	NA	33	True	AATAAA	-22	NA	142702411	142721440	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_142702753_142710012_142710156_142710279_142710436_142713529_142713664_142716248_142716344_142716891_142717064_142717840_142717995_142720875
transcript_49052.known	chr6	-	8991	5	FSM	ENSMUSG00000030283.8	ENSMUST00000032421.4	8991	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_4	3.11247489949718	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAAGCTTCTGACGTCCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	142910178	142767270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_142774997_142813579_142813673_142822373_142822484_142859749_142859895_142909261
transcript_49057.known	chr6	-	3526	24	FSM	ENSMUSG00000030279.16	ENSMUST00000204655.3	3526	24	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	28.8381180218075	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGTCTGTAGAATTGCCTGA	NA	False	NA	NA	False	TTTAAA	-17	NA	143045493	142957207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_142957863_142958927_142959075_142963608_142963800_142974885_142974973_142975298_142975387_142975847_142975938_142976503_142976603_142976970_142977033_142977287_142977352_142980747_142980889_142981960_142982126_142984548_142984736_142987077_142987270_142992768_142992865_142995850_142995966_143007478_143007588_143012781_143012868_143018268_143018421_143023988_143024188_143025594_143025751_143027058_143027155_143028888_143029061_143036324_143036412_143045403
transcript_49058.nic	chr6	-	2512	11	NIC	ENSMUSG00000030268.18	novel	2556	11	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	210	junction_10	1167.49801284627	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTCTGGATTTGAATC	NA	False	NA	-24	True	AATAAA	-16	NA	144993417	144944883	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_144993165
transcript_49059.known	chr6	-	7833	11	FSM	ENSMUSG00000030268.18	ENSMUST00000032402.12	7833	11	0	0	0	0	multi-exon	FALSE	canonical	3	243	junction_10	1157.84085262181	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTTTGCCCAGTGTCGTGA	NA	False	NA	-5	True	AATAAA	-16	NA	144994538	144939560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_144994288
transcript_49061.known	chr6	-	2556	11	FSM	ENSMUSG00000030268.18	ENSMUST00000111742.8	2556	11	0	0	0	0	multi-exon	FALSE	canonical	3	3523	junction_3	257.484057758922	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAACTCTGGATTTGAATC	8485	False	NA	-24	True	AATAAA	-16	NA	145021910	144944883	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_144946031_144950076_144950152_144953341_144953483_144955775_144955862_144961174_144961318_144964917_144965082_144978508_144978629_144980266_144980378_144985160_144985362_144993017_144993090_145021614
transcript_49064.known	chr6	+	2319	19	FSM	ENSMUSG00000030263.14	ENSMUST00000032396.13	2319	19	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	13.9594872380979	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGGCTGGAACGCCTGGT	NA	False	NA	17	True	AATAAA	-22	NA	145067464	145120660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_145067833_145083185_145083334_145083907_145083990_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
transcript_49065.known	chr6	+	1761	17	FSM	ENSMUSG00000030263.14	ENSMUST00000132948.2	1761	17	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	14.1684894660652	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGTGTGGCTGGAACG	NA	False	NA	11	True	AATAAA	-16	NA	145091202	145120654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_145091249_145093361_145093409_145093505_145093571_145093704_145093804_145095012_145095084_145104369_145104428_145106099_145106164_145106258_145106287_145106602_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
transcript_49067.nic	chr6	+	1597	9	ISM	ENSMUSG00000030263.14	ENSMUST00000132948.2	1761	17	15086	0	2816	0	3prime_fragment	FALSE	canonical	3	39	junction_1	6.7256505261573	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAGTGTGGCTGGAACG	NA	False	NA	11	True	AATAAA	-16	NA	145106288	145120654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_145106744_145110922_145111058_145113694_145113843_145115472_145115517_145117229_145117293_145117380_145117431_145117709_145117812_145119429_145119538_145120162
transcript_49069.known	chr6	-	4678	5	FSM	ENSMUSG00000030265.15	ENSMUST00000032399.12	4678	5	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_1	85.6661397519463	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTAATTATGTAGTTTT	NA	False	NA	-8	True	AATAAA	-22	NA	145195965	145162424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_145166451_145177820_145177981_145179973_145180153_145192420_145192543_145195774
transcript_49070.known	chr6	+	1618	4	FSM	ENSMUSG00000040370.14	ENSMUST00000111724.8	1618	4	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	142.199390528464	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAAGGAGTCTTTATC	NA	False	NA	14	True	NA	NA	NA	145156900	145162265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_145156979_145160247_145160511_145160909_145160998_145161076
transcript_49072.known	chr6	+	1336	3	FSM	ENSMUSG00000040370.14	ENSMUST00000111721.2	1336	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	139.5	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAAGGAGTCTTTATC	NA	False	NA	14	True	NA	NA	NA	145156911	145162265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_145156971_145160909_145160998_145161076
transcript_49075.known	chr6	+	2436	3	FSM	ENSMUSG00000040370.14	ENSMUST00000039729.5	2436	3	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_1	153.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAACAAACAAACAAACAAA	NA	False	NA	NA	False	AAAACA	-33	NA	145156881	145162665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_145156979_145160247_145160998_145161076
transcript_49077.nnic	chr6	+	1509	3	NNC	ENSMUSG00000040370.14	novel	1374	3	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	145	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTTAAAGGAGTCTTTATC	NA	False	NA	14	True	NA	NA	NA	145156894	145162265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_145157127_145160909_145160998_145161076
transcript_49078.known	chr6	+	899	2	FSM	ENSMUSG00000086013.2	ENSMUST00000139612.2	899	2	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGAGTGAGGATTCTGACT	NA	False	NA	6	True	NA	NA	NA	145196254	145197575	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_145196516_145196937
transcript_49079.known	chr6	-	3059	18	FSM	ENSMUSG00000040250.15	ENSMUST00000032427.15	3059	18	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_2	56.6296167637544	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCGGAGTGTTACTTTAG	NA	False	NA	-2	True	AATAAA	-26	NA	146479333	146451129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_146451484_146451584_146451663_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
transcript_49085.nic	chr6	-	2999	17	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	201	junction_1	24.9699819783675	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCGGAGTGTTACTTTAG	NA	False	NA	-2	True	AATAAA	-26	NA	146479351	146451129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146476199_146476275_146477722_146477959_146478798
transcript_49088.nnic	chr6	-	2517	16	NIC	ENSMUSG00000040250.15	novel	3059	18	NA	NA	334	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_14	63.7024332345319	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATCGGAGTGTTACTTTAG	NA	False	NA	-2	True	AATAAA	-26	NA	146478944	146451129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_146451484_146452136_146452273_146453869_146454010_146455481_146455713_146455989_146456145_146456425_146456597_146457628_146457808_146458748_146458839_146459030_146459121_146461623_146461709_146463226_146463356_146464924_146465016_146467125_146467207_146467990_146468194_146477722_146477959_146478798
transcript_49092.known	chr6	+	2880	7	FSM	ENSMUSG00000040242.15	ENSMUST00000111663.9	2880	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	146.964470385041	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCTCAGGGTTAATTT	NA	False	NA	29	True	AATAAA	-20	NA	146479356	146500696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131_146494246_146496673_146496788_146498792
transcript_49094.known	chr6	+	2766	6	FSM	ENSMUSG00000040242.15	ENSMUST00000067404.13	2766	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	164.658434342125	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTCTCAGGGTTAATTT	NA	False	NA	29	True	AATAAA	-20	NA	146479356	146500696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146496673_146496788_146498792
transcript_49097.known	chr6	+	918	5	FSM	ENSMUSG00000040242.15	ENSMUST00000058245.5	918	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	170.445005793658	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGTGTGCTTTTCATGGC	NA	False	NA	NA	False	AATAAA	-16	NA	146479418	146494363	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_146479707_146487179_146487317_146490237_146490356_146491391_146491535_146494131
transcript_49098.known	chr6	-	3241	12	FSM	ENSMUSG00000040234.17	ENSMUST00000037709.16	3241	12	0	0	0	0	multi-exon	FALSE	canonical	3	689	junction_8	114.912830779186	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAATGTCCTCCTTATTA	NA	False	NA	NA	False	AATAAA	-20	NA	146536095	146503849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_146505520_146507625_146507789_146509076_146509175_146511313_146511467_146512371_146512453_146514875_146514963_146520031_146520210_146521337_146521510_146523372_146523494_146525061_146525213_146527593_146527749_146535883
transcript_4910.known	chr10	-	772	3	FSM	ENSMUSG00000035278.10	ENSMUST00000218036.2	772	3	0	0	0	0	multi-exon	FALSE	canonical	3	1230	junction_2	7.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATGTCGGAATGAGTGGA	NA	False	NA	-3	True	AATAAA	-17	NA	80633722	80631932	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80632357_80632424_80632657_80633606
transcript_49102.known	chr6	+	814	4	FSM	ENSMUSG00000030291.13	ENSMUST00000032429.9	814	4	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_3	35.4902177445498	248	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGTTTTTGTTTGTCCTT	NA	False	NA	36	True	AATAAA	-21	NA	146544044	146552100	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_146544151_146549662_146549778_146550647_146550749_146551608
transcript_49105.known	chr6	+	4550	14	FSM	ENSMUSG00000001630.14	ENSMUST00000001675.14	4550	14	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_10	10.7620855417108	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTGGGGTGTTTGTTTT	NA	False	NA	15	True	AATAAA	-20	NA	146626492	146680310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_146626546_146659958_146660104_146661618_146661671_146667692_146667816_146668235_146668320_146668916_146669041_146669830_146669986_146670331_146670435_146670592_146670655_146673079_146673198_146673595_146673720_146674815_146674912_146676897_146676990_146677091
transcript_49107.known	chr6	+	4162	8	FSM	ENSMUSG00000040112.10	ENSMUST00000036111.10	4162	8	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_4	51.0230040155958	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATACTCTACTTCCTTGT	NA	False	NA	NA	False	TTTAAA	-16	NA	146944261	146975489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_146944399_146947608_146947647_146949631_146949800_146951325_146951387_146957349_146957490_146961639_146961750_146962920_146962991_146972051
transcript_49109.nnic	chr6	+	1084	8	NNC	ENSMUSG00000040112.10	novel	4162	8	NA	NA	-4	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	237.425391073766	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACTATTGTCTTACGTCA	NA	False	NA	12	True	TATAAA	-14	NA	146944257	146972397	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_+_146944409_146947608_146947647_146949631_146949800_146951325_146951387_146957349_146957490_146961639_146961750_146962920_146962991_146972051
transcript_49113.known	chr6	+	2459	13	FSM	ENSMUSG00000030301.18	ENSMUST00000032441.14	2459	13	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	9.07683253612673	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGATTGTCATGTTTTTG	NA	False	NA	17	True	AATAAA	-18	NA	147377368	147534110	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_147377558_147409281_147409326_147412321_147412401_147435526_147435688_147437085_147437290_147438873_147438979_147464132_147464211_147476970_147477079_147491884_147491978_147492066_147492136_147493536_147493714_147508379_147508494_147533072
transcript_49118.known	chr6	+	943	1	FSM	ENSMUSG00000063171.5	ENSMUST00000071745.4	943	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4993	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGGTTGCATATGTTTC	NA	False	NA	13	True	ATTAAA	-17	NA	148256153	148257096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_148256200_148257100
transcript_49119.known	chr6	-	5360	25	FSM	ENSMUSG00000040029.16	ENSMUST00000048418.14	5360	25	0	0	0	0	multi-exon	TRUE	canonical	3	188	junction_1	23.3505516827524	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGTCTGCTCTATGGGAT	NA	False	NA	-1	True	AATAAA	-27	NA	148732965	148672180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_148674308_148676474_148676592_148678700_148678902_148684095_148684302_148685999_148686221_148688192_148688289_148690568_148690667_148691294_148691421_148692938_148693006_148698138_148698265_148700120_148700282_148701224_148701391_148701678_148701769_148702984_148703102_148703410_148703488_148706119_148706220_148707882_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725984_148732661
transcript_49122.known	chr6	-	1408	11	FSM	ENSMUSG00000040029.16	ENSMUST00000204936.2	1408	11	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_10	65.1536645170477	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATACAGTTGTTCTTTGT	NA	False	NA	NA	False	AAGAAA	-9	NA	148732962	148703411	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_148703488_148706119_148706220_148707882_148708018_148711377_148711463_148712165_148712261_148713564_148713655_148717982_148718140_148719461_148719621_148723092_148723250_148725901_148725955_148732661
transcript_49123.known	chr6	-	3697	19	FSM	ENSMUSG00000030309.17	ENSMUST00000111569.9	3697	19	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_10	9.04805415272352	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCAGTTGTTTCTGTTTG	NA	False	NA	-1	True	AATAAA	-14	NA	148797735	148743989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_148744897_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148770486_148771144_148772110_148772155_148774505_148774662_148777950_148778034_148779239_148779479_148784945_148785033_148792106_148792170_148796434_148796655_148797515
transcript_49126.known	chr6	-	2952	18	FSM	ENSMUSG00000030309.17	ENSMUST00000072324.12	2952	18	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_10	17.2566621205624	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCAGTTGTTTCTGTTT	NA	False	NA	-2	True	AATAAA	-13	NA	148797648	148743990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_148744897_148746669_148746734_148747650_148747752_148749603_148749790_148752772_148752942_148760098_148760240_148761984_148762087_148763901_148763967_148765000_148765071_148767327_148767451_148772110_148772155_148774505_148774662_148777950_148778034_148779239_148779479_148784945_148785033_148792106_148792170_148796434_148796655_148797515
transcript_49128.nic	chr6	-	718	4	NIC	ENSMUSG00000030309.17	novel	598	4	NA	NA	4	99	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	34.4705993887867	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGGTTTTTCTTCATTCTA	NA	False	NA	NA	False	AATAAA	-16	NA	148797731	148789069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_148789289_148792106_148792170_148796434_148796655_148797515
transcript_49129.known	chr6	-	1163	1	FSM	ENSMUSG00000030309.17	ENSMUST00000203014.2	1163	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCAGTTGTTTCTGTTTG	NA	False	NA	-1	True	AATAAA	-14	NA	148745152	148743989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_148744000_148745200
transcript_4913.known	chr10	+	744	6	FSM	ENSMUSG00000035242.16	ENSMUST00000179172.8	744	6	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_2	3507.00679212345	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCAGCCCTGCCCAGTGTC	NA	False	NA	NA	False	NA	NA	NA	80662526	80664839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80662740_80664070_80664129_80664129_80664217_80664294_80664468_80664552_80664631_80664704
transcript_49132.nnic	chr6	-	1450	7	NNC	ENSMUSG00000039985.15	novel	2785	7	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	833.564967807282	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	AATAAA	-25	NA	148848016	148822554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_148822728_148824003_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
transcript_49136.known	chr6	-	2737	6	FSM	ENSMUSG00000039985.15	ENSMUST00000081956.12	2737	6	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_5	848.577303490967	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	AATAAA	-25	NA	148846324	148822554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148846086
transcript_49137.known	chr6	-	906	6	FSM	ENSMUSG00000039985.15	ENSMUST00000111562.8	906	6	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_5	856.005280357545	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACTCTGAAGCCAGTCTC	NA	False	NA	NA	False	NA	NA	NA	148846310	148824210	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148846247
transcript_49138.nic	chr6	-	2641	6	NIC	ENSMUSG00000039985.15	novel	2737	6	NA	NA	-33	0	combination_of_known_junctions	FALSE	canonical	3	122	junction_5	837.245818144229	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTCATGACTTTGTTT	NA	False	NA	NA	False	AATAAA	-25	NA	148847686	148822554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847544
transcript_49139.known	chr6	-	2697	6	FSM	ENSMUSG00000039985.15	ENSMUST00000054080.15	2697	6	0	0	0	0	multi-exon	FALSE	canonical	3	1893	junction_3	186.383046439315	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTCTCTGGTAAGAATTT	NA	False	NA	NA	False	AATAAA	-24	NA	148847965	148822532	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_148824529_148827510_148827662_148830006_148830134_148832048_148832149_148834499_148834647_148847789
transcript_49142.known	chr6	+	848	5	FSM	ENSMUSG00000039958.18	ENSMUST00000134306.8	848	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	6.86931583201704	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTAACTAAAAACATTTTG	NA	False	NA	NA	False	ATTAAA	-21	NA	149043061	149051896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_149043203_149044103_149044214_149045531_149045941_149048655_149048787_149051839
transcript_49144.known	chr6	+	1558	5	FSM	ENSMUSG00000039958.18	ENSMUST00000111551.2	1558	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	10.2316909648406	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAGGAACTCAAGTGTTATC	NA	False	NA	NA	False	NA	NA	NA	149043143	149052669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_149043203_149044103_149044214_149045512_149045941_149048655_149048787_149051839
transcript_49145.known	chr6	-	1369	7	FSM	ENSMUSG00000068250.14	ENSMUST00000095319.10	1369	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	36.5087508535815	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTCCCATATTTATTT	NA	False	NA	-1	True	TATAAA	-29	NA	149090183	149059075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149089733
transcript_49146.nic	chr6	-	1146	7	NIC	ENSMUSG00000068250.14	novel	1369	7	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_6	33.0840680019183	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTCCCATATTTATTT	NA	False	NA	-1	True	TATAAA	-29	NA	149090196	149059075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149089969
transcript_49147.known	chr6	-	1457	7	FSM	ENSMUSG00000068250.14	ENSMUST00000111535.8	1457	7	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_5	14.7723465374402	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTGGGGGGGCGGCT	NA	False	NA	NA	False	NA	NA	NA	149090210	149058644	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149086489_149086623_149090103
transcript_49150.nic	chr6	-	912	6	NIC	ENSMUSG00000068250.14	novel	1457	7	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	34.1607962436475	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTCCCATATTTATTT	NA	False	NA	-1	True	TATAAA	-29	NA	149090229	149059075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084891_149085037_149090103
transcript_49151.nnic	chr6	-	840	6	NNC	ENSMUSG00000068250.14	novel	1457	7	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	45.5165903819695	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTCCCATATTTATTT	NA	False	NA	-1	True	TATAAA	-29	NA	149090229	149059075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149084963_149085037_149090103
transcript_49155.nic	chr6	-	762	5	NIC	ENSMUSG00000068250.14	novel	1457	7	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_4	42.3932482831877	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATTGTCCCATATTTATTT	NA	False	NA	-1	True	TATAAA	-29	NA	149090224	149059075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr6_-_149059330_149068303_149068416_149070945_149071003_149072330_149072549_149090103
transcript_49157.known	chr6	+	1957	5	FSM	ENSMUSG00000032712.17	ENSMUST00000130664.8	1957	5	0	0	0	0	multi-exon	TRUE	canonical	3	64	junction_3	55.879334283794	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAATTAAAATTAATA	NA	False	NA	NA	False	ATTAAA	-39	NA	149210911	149228169	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_149211403_149211819_149211876_149219132_149219207_149226229_149226299_149226902
transcript_49159.known	chr6	+	4152	4	FSM	ENSMUSG00000032712.17	ENSMUST00000190785.7	4152	4	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	71.6286720990042	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAATAAAAAAGAAGAAATAT	NA	False	NA	15	True	AAAAAG	-33	NA	149210953	149230475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_149211403_149211819_149211876_149219132_149219207_149226902
transcript_49160.nic	chr6	+	1683	3	ISM	ENSMUSG00000032712.17	ENSMUST00000189932.7	5269	5	-65	8377	-5	-118	5prime_fragment	FALSE	canonical	3	27	junction_2	92	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATATACCTACAATCCT	NA	False	NA	NA	False	AAGAAA	-4	NA	149210906	149228051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_149211403_149211819_149211858_149226902
transcript_49161.nic	chr6	+	1701	3	ISM	ENSMUSG00000032712.17	ENSMUST00000046689.13	6066	5	-19	9110	-5	-118	5prime_fragment	FALSE	canonical	3	27	junction_2	92	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAATATACCTACAATCCT	NA	False	NA	NA	False	AAGAAA	-4	NA	149210906	149228051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr6_+_149211403_149211819_149211876_149226902
transcript_49162.known	chr6	+	6066	5	FSM	ENSMUSG00000032712.17	ENSMUST00000046689.13	6066	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	95.7405347802069	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTAAGTCTTCATGGTTCT	NA	False	NA	12	True	AATAAA	-24	NA	149210925	149237161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_149211403_149211819_149211876_149226902_149231283_149232923_149233005_149236089
transcript_49163.known	chr6	+	4049	8	FSM	ENSMUSG00000003452.16	ENSMUST00000111513.9	4049	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	6.57763681898362	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAATAGATA	182	False	NA	NA	False	AATGAA	-12	NA	149310513	149459317	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr6_+_149311140_149385481_149385695_149396057_149396211_149413189_149413616_149414293_149415389_149418430_149418583_149420403_149420612_149458141
transcript_49164.nic	chr7	-	3465	12	NIC	ENSMUSG00000054753.10	novel	3449	12	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	141	junction_11	34.6786904344431	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9487	False	NA	87	True	NA	NA	NA	3219048	3204497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214125_3218840
transcript_49165.known	chr7	-	3449	12	FSM	ENSMUSG00000054753.10	ENSMUST00000171749.3	3449	12	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_11	40.7771610034849	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTTTATTTTTCTGTG	9506	False	NA	87	True	NA	NA	NA	3219029	3204497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_3205949_3206105_3206215_3207744_3207912_3208057_3208270_3208394_3208498_3208594_3208735_3208891_3209115_3209268_3209382_3211070_3211249_3212041_3212201_3213722_3214128_3218840
transcript_49168.known	chr7	+	3127	18	FSM	ENSMUSG00000078816.11	ENSMUST00000100301.11	3127	18	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_10	8.64845927034781	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGGATGTTTTCTTGTA	NA	False	NA	11	True	AATAAA	-22	NA	3352037	3379615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3352476_3352821_3352854_3353859_3353943_3359079_3359192_3359351_3359484_3360904_3361062_3362213_3362349_3362648_3362737_3363027_3363058_3367375_3367529_3368046_3368236_3370855_3370948_3371032_3371096_3371971_3372111_3375931_3376013_3377550_3377659_3378343_3378485_3378661
transcript_49169.known	chr7	+	2119	17	FSM	ENSMUSG00000078816.11	ENSMUST00000172109.4	2119	17	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_9	8.11802585300146	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCCGCCAAGCCGGCTGT	NA	False	NA	NA	False	NA	NA	NA	3352160	3378883	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3352476_3352821_3352854_3353859_3353943_3359079_3359192_3359351_3359484_3360904_3361062_3362213_3362349_3362648_3362737_3363027_3363058_3368046_3368236_3370855_3370948_3371032_3371096_3371971_3372111_3375931_3376013_3377550_3377659_3378343_3378485_3378661
transcript_4917.nic	chr10	+	1014	6	NIC	ENSMUSG00000035242.16	novel	1071	6	NA	NA	0	0	combination_of_known_junctions	FALSE	non_canonical	0	0	junction_2	3491.20233730444	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	14	True	AATAAA	-14	NA	80662519	80665119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_80662740_80664070_80664126_80664129_80664217_80664294_80664468_80664544_80664631_80664726
transcript_49172.nnic	chr7	+	1904	4	NNC	ENSMUSG00000068566.14	novel	2813	3	NA	NA	15	200	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	394.295151715903	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCACATGGTATCTCTCTCT	245	False	NA	NA	False	TTTAAA	-18	NA	3339073	3347001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_3339156_3341727_3341816_3345237_3346670_3346699
transcript_49173.nnic	chr7	+	2633	4	NNC	ENSMUSG00000068566.14	novel	2813	3	NA	NA	15	-108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	394.295151715903	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATATATTTTAATTTT	245	False	NA	13	True	NA	NA	NA	3339073	3347730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_3339156_3341727_3341816_3345237_3346670_3346699
transcript_49174.nnic	chr7	+	2768	4	NNC	ENSMUSG00000068566.14	novel	2813	3	NA	NA	15	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	394.295151715903	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	245	False	NA	14	True	AATATA	-8	NA	3339073	3347865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_3339156_3341727_3341816_3345237_3346670_3346699
transcript_49179.nnic	chr7	+	2786	4	NNC	ENSMUSG00000068566.14	novel	4027	3	NA	NA	-17	-108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	400.600660120386	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATATATTTTAATTTT	254	False	NA	13	True	NA	NA	NA	3339082	3347730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_3339318_3341727_3341816_3345237_3346670_3346699
transcript_49180.nnic	chr7	+	2921	4	NNC	ENSMUSG00000068566.14	novel	4027	3	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	400.600660120386	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	254	False	NA	14	True	AATATA	-8	NA	3339082	3347865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_3339318_3341727_3341816_3345237_3346670_3346699
transcript_49181.nnic	chr7	+	2669	4	NNC	ENSMUSG00000068566.14	novel	2798	2	NA	NA	-123	-108	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	427.750965970726	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATATATTTTAATTTT	2667	False	NA	13	True	NA	NA	NA	3341495	3347730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_3341614_3341727_3341816_3345237_3346670_3346699
transcript_49183.known	chr7	+	2813	3	FSM	ENSMUSG00000068566.14	ENSMUST00000096744.8	2813	3	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_1	308.5	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	230	False	NA	14	True	AATATA	-8	NA	3339058	3347865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3339156_3341727_3341816_3345237
transcript_49185.known	chr7	+	4027	3	FSM	ENSMUSG00000068566.14	ENSMUST00000203566.3	4027	3	0	0	0	0	multi-exon	FALSE	canonical	3	270	junction_1	341	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCGTCCAGTTCATAGCG	271	False	NA	NA	False	ATTAAA	-14	NA	3339099	3348958	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3339318_3341727_3341816_3345237
transcript_49187.nnic	chr7	+	2699	3	NNC	ENSMUSG00000068566.14	novel	2798	2	NA	NA	-123	-108	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_1	427.5	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATATATATATTTTAATTTT	2667	False	NA	13	True	NA	NA	NA	3341495	3347730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_3341614_3341727_3341816_3345237
transcript_49188.nnic	chr7	+	2834	3	NNC	ENSMUSG00000068566.14	novel	2798	2	NA	NA	-123	0	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_1	427.5	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGAAGACTCATGCTTTCT	2667	False	NA	14	True	AATATA	-8	NA	3341495	3347865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_3341614_3341727_3341816_3345237
transcript_49189.known	chr7	+	2798	2	FSM	ENSMUSG00000068566.14	ENSMUST00000164553.8	2798	2	0	0	0	0	multi-exon	FALSE	canonical	3	952	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAAAAAACCCTCAATATA	2790	False	NA	-13	True	TTTAAA	-10	NA	3341618	3347838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3341816_3345237
transcript_4919.nic	chr10	+	1115	5	ISM	ENSMUSG00000035242.16	ENSMUST00000060987.15	1071	6	24	6	-2	0	intron_retention	TRUE	non_canonical	0	0	junction_2	3186.42134690314	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGGCTGTGTCTTGTGTCC	NA	False	NA	13	True	AATAAA	-13	NA	80662513	80665118	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_80662740_80664070_80664126_80664129_80664217_80664294_80664468_80664544
transcript_49194.known	chr7	+	1977	4	FSM	ENSMUSG00000078815.9	ENSMUST00000183200.8	1977	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	6.16441400296898	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTCTGTGTTGGAGCTC	NA	False	NA	NA	False	ATTAAA	-21	NA	3472710	3484183	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3473509_3478953_3479029_3480334_3480473_3483217
transcript_49195.known	chr7	+	868	3	FSM	ENSMUSG00000078815.9	ENSMUST00000108647.3	868	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	11.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGAATCCCCAGAACCCA	NA	False	NA	NA	False	NA	NA	NA	3473177	3483679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3473509_3478953_3479029_3483217
transcript_49196.nnic	chr7	-	940	6	NNC	ENSMUSG00000053338.10	novel	1535	6	NA	NA	-31024	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	18.7467330487208	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACACTCCTTTTTACGTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	3582164	3537586	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_3537738_3544441_3544508_3545190_3545488_3545940_3546232_3546711_3546748_3582065
transcript_49203.known	chr7	-	1166	6	FSM	ENSMUSG00000006335.17	ENSMUST00000108641.10	1166	6	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_1	47.3142684610044	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTCTAGGTCACCGTT	NA	False	NA	-1	True	AATAAA	-16	NA	3632928	3623322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_3623474_3623745_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
transcript_49205.known	chr7	-	1091	6	FSM	ENSMUSG00000006335.17	ENSMUST00000155592.8	1091	6	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	68.2800117164606	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTGTCTAGGTCACCGTT	NA	False	NA	-1	True	AATAAA	-16	NA	3632883	3623322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_3623474_3623775_3623983_3624061_3624132_3627597_3627669_3631826_3632086_3632550
transcript_49209.known	chr7	-	722	5	FSM	ENSMUSG00000006335.17	ENSMUST00000206370.2	722	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_3	106.970498269383	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCAAGGCACAGATGTCCCT	NA	False	NA	NA	False	NA	NA	NA	3632858	3623972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_3623983_3624061_3624132_3627597_3627669_3631822_3632086_3632550
transcript_4921.known	chr10	+	520	3	FSM	ENSMUSG00000035242.16	ENSMUST00000179341.2	520	3	0	0	0	0	multi-exon	FALSE	canonical	3	460	junction_2	3355	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGGCTGTGTCTTGTGTCCT	NA	False	NA	14	True	AATAAA	-14	NA	80664426	80665119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80664468_80664544_80664631_80664726
transcript_49211.known	chr7	+	351	4	FSM	ENSMUSG00000035674.14	ENSMUST00000108644.8	351	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	1435.61655357163	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCTCCAATAAAAATGTGAA	268	False	NA	-13	True	NA	NA	NA	3620384	3623127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3620407_3620615_3620691_3622428_3622507_3622951
transcript_49212.known	chr7	+	515	4	FSM	ENSMUSG00000035674.14	ENSMUST00000076657.11	515	4	0	0	0	0	multi-exon	FALSE	canonical	3	2080	junction_1	661.918591839074	817	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGGAATCTGTTTATTGGG	255	False	NA	NA	False	AATAAA	-23	NA	3620371	3623326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3620407_3620615_3620691_3622428_3622507_3622999
transcript_49214.known	chr7	+	782	4	FSM	ENSMUSG00000035674.14	ENSMUST00000150497.8	782	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	1418.73472581107	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAACCCCACAATCTTTTC	262	False	NA	11	True	AATAAA	-13	NA	3620378	3623151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3620407_3620615_3621140_3622428_3622507_3622999
transcript_49215.known	chr7	+	343	4	FSM	ENSMUSG00000035674.14	ENSMUST00000148403.2	343	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	1620.57650921585	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTTTTCTTTCGTGGGTT	273	False	NA	22	True	AATAAA	-24	NA	3620389	3623162	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3620417_3620615_3620691_3622428_3622507_3622999
transcript_49223.known	chr7	+	3144	14	FSM	ENSMUSG00000008373.17	ENSMUST00000008517.13	3144	14	0	0	0	0	multi-exon	FALSE	canonical	3	674	junction_1	77.2880572079687	456	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATGAGTTCAATACTTGGC	2933	False	NA	NA	False	AATAAA	-21	NA	3632983	3645485	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3633056_3633556_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641629_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
transcript_49224.known	chr7	+	3125	14	FSM	ENSMUSG00000008373.17	ENSMUST00000179769.8	3125	14	0	0	0	0	multi-exon	FALSE	canonical	2	54	junction_9	235.328122934313	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATGAGTTCAATACTTGG	2933	False	NA	NA	False	AATAAA	-20	NA	3632983	3645484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3633056_3633556_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641647_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
transcript_49238.known	chr7	+	827	3	FSM	ENSMUSG00000008373.17	ENSMUST00000143231.2	827	3	0	0	0	0	multi-exon	FALSE	canonical	3	674	junction_1	159.5	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAGAAAAATAAACATG	2940	False	NA	NA	False	AAAAAG	-2	NA	3632990	3634420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3633056_3633556_3633742_3633843
transcript_49240.known	chr7	+	1798	13	FSM	ENSMUSG00000008373.17	ENSMUST00000108636.2	1798	13	0	0	0	0	multi-exon	FALSE	canonical	2	54	junction_8	240.724759262985	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGGGTGTGAGTGATTAT	3505	False	NA	14	True	ATTAAA	-22	NA	3633555	3644228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3633742_3633843_3633905_3635666_3635751_3636302_3636401_3637122_3637230_3637691_3637862_3639199_3639358_3639660_3639751_3641647_3641758_3641856_3641930_3642574_3642704_3642787_3642887_3643795
transcript_49242.known	chr7	+	2822	18	FSM	ENSMUSG00000035632.17	ENSMUST00000038913.16	2822	18	0	0	0	0	multi-exon	FALSE	canonical	3	860	junction_1	78.9623448430591	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGAGGCCTCTCCTATCCC	2812	False	NA	NA	False	AATAAA	-23	NA	3648350	3664108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3648584_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806_3654936_3655031_3655128_3656198_3656419_3656509_3656644_3657141_3657199_3658569_3658952_3659031_3659156_3659785_3659985_3660999_3661100_3661191_3661391_3661607_3661741_3662379_3662506_3663726
transcript_49243.known	chr7	-	2310	15	FSM	ENSMUSG00000019734.17	ENSMUST00000038743.15	2310	15	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_12	9.74077271376478	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGCGTTTTGAAACCCCG	5398	False	NA	-12	True	AATAAA	-16	NA	3680552	3668788	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_3669008_3669100_3669180_3669817_3669974_3670046_3670178_3670439_3670624_3672572_3672671_3672913_3673041_3673936_3674101_3674272_3674441_3674961_3675110_3677585_3677708_3677848_3678082_3678424_3678571_3679562_3679768_3680422
transcript_49245.known	chr7	-	2222	4	FSM	ENSMUSG00000078813.4	ENSMUST00000019878.8	2222	4	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_3	1.69967317119759	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGCAGGCACCATCAATACT	8703	False	NA	-19	True	AAAACA	-45	NA	3668839	3663096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_3664360_3665769_3666024_3666680_3666861_3668314
transcript_49247.nic	chr7	-	668	4	ISM	ENSMUSG00000078813.4_ENSMUSG00000019734.17	ENSMUST00000136678.3	1529	6	3220	-167	-379	0	3prime_fragment	FALSE	canonical	3	25	junction_3	7.48331477354788	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTGCGTTTTGAAACCCC	7281	False	NA	-13	True	AATAAA	-15	NA	3670261	3668789	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_3669008_3669100_3669180_3669817_3669974_3670046
transcript_49249.known	chr7	+	639	6	FSM	ENSMUSG00000035632.17	ENSMUST00000206287.2	639	6	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_1	372.997908841323	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCGTATAGCAAGGAGGGTC	2769	False	NA	NA	False	NA	NA	NA	3648307	3654850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3648595_3653799_3653875_3653979_3654048_3654266_3654342_3654492_3654583_3654806
transcript_49252.known	chr7	-	2878	8	FSM	ENSMUSG00000035596.15	ENSMUST00000038608.14	2878	8	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_4	25.6960252623964	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTTGTGAGTATAACTG	7393	False	NA	-2	True	AATAAA	-15	NA	3696522	3680787	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_3681849_3686807_3686985_3688672_3689034_3691521_3691682_3694260_3694388_3694804_3694935_3695038_3695118_3695739
transcript_49258.known	chr7	+	1375	6	FSM	ENSMUSG00000035585.17	ENSMUST00000205287.2	1375	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_5	529.055913869224	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTTGTTCTTTATTTT	2173	False	NA	NA	False	NA	NA	NA	3696761	3703886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3698711_3698833_3703526
transcript_4926.known	chr10	-	550	4	FSM	ENSMUSG00000035215.10	ENSMUST00000220406.2	550	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	2083.35727986237	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCCCTCCCTTCCTGCTCT	NA	False	NA	-21	True	AATAAA	-17	NA	80690977	80688666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80688935_80689591_80689664_80690451_80690543_80690858
transcript_49267.nic	chr7	+	1521	5	NIC	ENSMUSG00000035585.17	novel	1779	5	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	477.15458710988	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2007	False	NA	6	True	AATAAA	-16	NA	3696595	3704011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_3696865_3697596_3697844_3697976_3698227_3698350_3698621_3703526
transcript_49269.known	chr7	+	1779	5	FSM	ENSMUSG00000035585.17	ENSMUST00000108630.8	1779	5	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_1	380.27448967818	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCCTTACAACAATCCTTGA	1785	False	NA	18	True	AATAAA	-28	NA	3696373	3704023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3696889_3697596_3697844_3697976_3698227_3698350_3698621_3703526
transcript_4927.known	chr10	-	468	4	FSM	ENSMUSG00000035215.10	ENSMUST00000035775.9	468	4	0	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_3	751.769616009822	1832	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCCTGCTCTGTAACTTT	NA	False	NA	-13	True	AATAAA	-25	NA	80691043	80688658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80688935_80689591_80689664_80690451_80690543_80691014
transcript_49274.nic	chr7	+	1371	5	NIC	ENSMUSG00000035585.17	novel	1319	4	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_1	477.15458710988	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTATTTTGAGTCCTTAC	2706	False	NA	6	True	AATAAA	-16	NA	3697294	3704011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_3697414_3697596_3697844_3697976_3698227_3698350_3698621_3703526
transcript_49275.known	chr7	+	1319	4	FSM	ENSMUSG00000035585.17	ENSMUST00000108627.4	1319	4	0	0	0	0	multi-exon	FALSE	canonical	3	1035	junction_3	83.107694522763	231	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAAATGTTTGTATTTTGA	2933	False	NA	-2	True	AATAAA	-8	NA	3697521	3704003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3697844_3697976_3698227_3698350_3698621_3703526
transcript_49276.known	chr7	-	3379	6	FSM	ENSMUSG00000035596.15	ENSMUST00000131688.8	3379	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	84.5614569410911	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGCCTTCCTGTCTGACC	7964	False	NA	NA	False	NA	NA	NA	3695951	3686356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_3689034_3691521_3691682_3694260_3694388_3694804_3694935_3695038_3695118_3695745
transcript_49285.known	chr7	+	751	5	FSM	ENSMUSG00000006333.15	ENSMUST00000006496.15	751	5	0	0	0	0	multi-exon	FALSE	canonical	3	8457	junction_1	2746.02161089457	8599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTGGTGTGCCTCTGTA	1264	False	NA	3	True	AATAAA	-18	NA	3706991	3709896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709649
transcript_49286.known	chr7	+	1347	5	FSM	ENSMUSG00000006333.15	ENSMUST00000108623.8	1347	5	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_4	5925.24712564801	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTTATTGGTGTGCCTCTG	1309	False	NA	1	True	AATAAA	-16	NA	3707036	3709894	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3707064_3707325_3707448_3707644_3707768_3708731_3708919_3709006
transcript_49287.known	chr7	+	914	4	FSM	ENSMUSG00000006333.15	ENSMUST00000108625.8	914	4	0	0	0	0	multi-exon	FALSE	canonical	3	14286	junction_1	337.374503416538	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTTTTCCAGCTGAAAAAT	1323	False	NA	-37	True	NA	NA	NA	3707050	3709856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3707448_3707644_3707768_3708731_3708919_3709649
transcript_49288.known	chr7	+	813	5	FSM	ENSMUSG00000006333.15	ENSMUST00000146927.2	813	5	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_3	7209.4740229437	1519	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTATTGGTGTGCCTCT	1635	False	NA	0	True	AATAAA	-15	NA	3707362	3709893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_3707448_3707644_3707768_3708731_3708919_3709006_3709181_3709649
transcript_4929.known	chr10	-	768	3	FSM	ENSMUSG00000035215.10	ENSMUST00000217921.2	768	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	2259.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTCAGTAGATGCCCTTG	NA	False	NA	NA	False	NA	NA	NA	80690977	80689190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80689664_80690451_80690543_80690773
transcript_49292.known	chr7	+	3620	16	FSM	ENSMUSG00000035545.14	ENSMUST00000121270.8	3620	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	106.117209830556	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTGTTTCTGCTTGGCCTG	109	False	NA	15	True	ATTAAA	-15	NA	4140064	4151171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_4140155_4141694_4141788_4142417_4142590_4142934_4143043_4144021_4144133_4145030_4145284_4145495_4145638_4145832_4146037_4146417_4146697_4146786_4146928_4147051_4147338_4147710_4147813_4147893_4147963_4148053_4148184_4148264_4148473_4149939
transcript_49293.known	chr7	-	421	3	FSM	ENSMUSG00000063838.7	ENSMUST00000143825.2	421	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	67.5	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGGCTGTGCCTTCACC	NA	False	NA	NA	False	NA	NA	NA	4167538	4154549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4154787_4167083_4167187_4167457
transcript_49294.known	chr7	-	3034	7	FSM	ENSMUSG00000008435.16	ENSMUST00000008579.14	3034	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	6.10100173924104	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAATTTGTCATTGTCCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	4448648	4428665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4430802_4433392_4433495_4434420_4434634_4437992_4438098_4445592_4445749_4447201_4447321_4448445
transcript_49296.known	chr7	-	1027	14	FSM	ENSMUSG00000064179.14	ENSMUST00000071798.13	1027	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_8	20.2312079507856	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTGGGAGTACAACTTG	9181	False	NA	82	True	ATTAAA	-15	NA	4518974	4507568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950_4513068_4513315_4513380_4515263_4515283_4516579_4516613_4516809_4516837_4517211_4517226_4517335_4517379_4518929
transcript_49298.known	chr7	-	885	13	FSM	ENSMUSG00000064179.14	ENSMUST00000163710.8	885	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	20.3570558338435	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTTCTTCAGGGTTGTT	9197	False	NA	-11	True	AATAAA	-19	NA	4518958	4507661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556_4512635_4512950_4513068_4513315_4513380_4515263_4515283_4516809_4516837_4517211_4517226_4517335_4517379_4518929
transcript_49300.nic	chr7	-	872	6	ISM	ENSMUSG00000064179.14	ENSMUST00000166161.8	750	12	4433	-92	3	0	3prime_fragment	FALSE	canonical	3	28	junction_3	11.499565209172	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTTCTTCAGGGTTGTT	9888	False	NA	-11	True	AATAAA	-19	NA	4512934	4507661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_4507800_4510381_4510423_4510520_4510612_4511472_4511583_4512009_4512124_4512556
transcript_49301.known	chr7	-	485	4	FSM	ENSMUSG00000064179.14	ENSMUST00000086502.5	485	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	18.0800688297608	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGGTCGAGTTGGAGGCC	7330	False	NA	NA	False	GGGGCT	-3	NA	4511024	4507784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4507800_4510381_4510423_4510520_4510612_4510686
transcript_49302.known	chr7	-	2224	12	FSM	ENSMUSG00000055809.8	ENSMUST00000094897.5	2224	12	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_9	6.85022772137618	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCGGTCTCCAGTGCCAAGA	NA	False	NA	1	True	AATAAA	-35	NA	4535452	4525931	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4526859_4526936_4527012_4527142_4527255_4529412_4529531_4529865_4529989_4530092_4530219_4530440_4530624_4530951_4531110_4533772_4533867_4534736_4534880_4535185_4535275_4535376
transcript_49304.known	chr7	-	912	8	FSM	ENSMUSG00000035458.16	ENSMUST00000098859.10	912	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	4.77664385637157	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACTGTGTGTCTGCTAAC	6917	False	NA	-2	True	AATAAA	-17	NA	4525527	4521303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4521451_4522396_4522574_4523436_4523527_4523961_4524094_4524343_4524386_4524814_4524902_4525068_4525082_4525303
transcript_49306.nic	chr7	-	1518	8	NIC	ENSMUSG00000063802.6	novel	1593	8	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	78	junction_7	161.654708864169	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTATGCTGTCTTGCATT	NA	False	NA	-7	True	AATAAA	-16	NA	4688079	4663519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687482_4687892
transcript_49307.nic	chr7	-	1741	8	NIC	ENSMUSG00000063802.6	novel	1593	8	NA	NA	-151	0	combination_of_known_junctions	FALSE	canonical	3	210	junction_7	116.504882966775	361	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTATGCTGTCTTGCATT	NA	False	NA	-7	True	AATAAA	-16	NA	4688218	4663519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687566_4687892
transcript_49308.known	chr7	-	1593	8	FSM	ENSMUSG00000063802.6	ENSMUST00000079970.6	1593	8	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_7	148.934720667842	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTTATGCTGTCTTGCATT	NA	False	NA	-7	True	AATAAA	-16	NA	4688067	4663519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4663845_4666379_4666492_4667518_4667616_4667701_4667858_4680705_4680931_4684842_4685048_4687270_4687569_4687892
transcript_4931.known	chr10	-	1129	3	FSM	ENSMUSG00000035215.10	ENSMUST00000220225.2	1129	3	0	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_2	840	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCTCTGTAACTTTGATC	NA	False	NA	-9	True	AATAAA	-29	NA	80691043	80688654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80689664_80690451_80690543_80691014
transcript_49319.known	chr7	+	2189	9	FSM	ENSMUSG00000059851.16	ENSMUST00000098853.9	2189	9	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	214.33585648463	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	583	False	NA	16	True	ATTAAA	-17	NA	4743113	4750513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_4743181_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
transcript_4932.known	chr10	+	2869	15	FSM	ENSMUSG00000035206.11	ENSMUST00000035597.10	2869	15	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	7.35298079221021	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCCTCCTGTCCTGTGAG	NA	False	NA	11	True	ATTAAA	-19	NA	80691108	80704542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80691223_80697179_80697300_80698013_80698197_80698532_80698623_80698788_80698929_80699013_80699154_80699288_80699386_80699871_80699989_80700954_80701037_80701143_80701219_80701288_80701352_80701441_80701542_80701885_80701964_80702333_80702495_80703233
transcript_49322.known	chr7	+	2177	9	FSM	ENSMUSG00000059851.16	ENSMUST00000108583.9	2177	9	0	0	0	0	multi-exon	FALSE	canonical	3	456	junction_1	88.3026578025826	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	653	False	NA	16	True	ATTAAA	-17	NA	4743183	4750513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_4743239_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
transcript_49325.known	chr7	+	2774	9	FSM	ENSMUSG00000059851.16	ENSMUST00000108582.10	2774	9	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	203.174647778703	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGAGGTTTTTTTTTTTTTTT	635	False	NA	16	True	ATTAAA	-17	NA	4743165	4750513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_4743818_4744778_4744981_4745120_4745287_4745617_4745728_4745945_4746110_4746245_4746266_4748800_4748938_4749075_4749261_4749375
transcript_49334.known	chr7	-	553	4	FSM	ENSMUSG00000051811.15	ENSMUST00000063324.14	553	4	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_1	73.0677007226099	487	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756093	4754790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4754975_4755059_4755161_4755722_4755849_4755951
transcript_49335.known	chr7	-	465	4	FSM	ENSMUSG00000051811.15	ENSMUST00000182048.2	465	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	332.524017511852	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGGTCACCCCCTCCCT	NA	False	NA	-72	True	NA	NA	NA	4756037	4754853	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4754975_4755059_4755161_4755722_4755880_4755951
transcript_49336.known	chr7	-	490	4	FSM	ENSMUSG00000051811.15	ENSMUST00000183334.8	490	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	338.542299999408	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATATTTGTTTCTTTTCTC	NA	False	NA	-12	True	AATAAA	-14	NA	4756022	4754793	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4754975_4755059_4755172_4755722_4755849_4755951
transcript_49338.known	chr7	-	401	4	FSM	ENSMUSG00000051811.15	ENSMUST00000183971.8	401	4	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	343.653895656662	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4755971	4754790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4754975_4755089_4755161_4755722_4755849_4755951
transcript_4934.known	chr10	-	1225	3	FSM	ENSMUSG00000020219.8	ENSMUST00000020440.7	1225	3	0	0	0	0	multi-exon	FALSE	canonical	3	3643	junction_2	39.5	1597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTCCCATCGGACTCCCA	5448	False	NA	NA	False	AATATA	-13	NA	80736803	80735283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80736094_80736315_80736385_80736457
transcript_49340.known	chr7	-	423	4	FSM	ENSMUSG00000051811.15	ENSMUST00000182738.8	423	4	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	362.510076488303	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATATTTGTTTCTTTTCTCG	NA	False	NA	-11	True	AATAAA	-15	NA	4756008	4754792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4754975_4755102_4755161_4755722_4755849_4755951
transcript_49348.known	chr7	-	391	3	FSM	ENSMUSG00000051811.15	ENSMUST00000182173.2	391	3	0	0	0	0	multi-exon	FALSE	canonical	3	803	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGAACTTTCCCGGGCAAAA	NA	False	NA	NA	False	NA	NA	NA	4756001	4754945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4755161_4755722_4755849_4755951
transcript_4935.known	chr10	-	542	3	FSM	ENSMUSG00000020219.8	ENSMUST00000219896.2	542	3	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_2	1726.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGTCACCTCACTGCTTCA	5632	False	NA	-7	True	AATAAA	-25	NA	80736619	80735737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80736094_80736315_80736385_80736502
transcript_49350.nic	chr7	-	1201	2	NIC	ENSMUSG00000051811.15	novel	553	4	NA	NA	-1	0	intron_retention	FALSE	canonical	3	803	junction_1	0	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756094	4754790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_4755849_4755951
transcript_49352.known	chr7	-	585	3	FSM	ENSMUSG00000051811.15	ENSMUST00000182111.8	585	3	0	0	0	0	multi-exon	FALSE	canonical	3	648	junction_1	77.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTCTTTTCTCGTT	NA	False	NA	-9	True	AATAAA	-17	NA	4756022	4754790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4754975_4755059_4755161_4755722
transcript_49353.known	chr7	-	1375	2	FSM	ENSMUSG00000030431.9	ENSMUST00000168578.3	1375	2	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACCACCTCCAGTTCCTTC	162	False	NA	NA	False	NA	NA	NA	4792655	4787555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4788279_4792003
transcript_49355.known	chr7	+	1106	5	FSM	ENSMUSG00000030432.13	ENSMUST00000032597.12	1106	5	0	0	0	0	multi-exon	FALSE	canonical	3	3938	junction_1	1160.31525888441	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCATGTCCTTTATATT	2693	False	NA	NA	False	NA	NA	NA	4795872	4798065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_4795998_4796319_4796409_4796501_4796626_4797062_4797182_4797416
transcript_49359.known	chr7	+	772	4	FSM	ENSMUSG00000030432.13	ENSMUST00000078432.5	772	4	0	0	0	0	multi-exon	FALSE	canonical	3	6459	junction_1	109.515092820832	1055	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGAGTCCACTGACTTC	2809	False	NA	-19	True	NA	NA	NA	4795988	4797525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_4796409_4796501_4796626_4797062_4797182_4797416
transcript_49360.known	chr7	-	1238	4	FSM	ENSMUSG00000060860.9	ENSMUST00000079496.9	1238	4	0	0	0	0	multi-exon	FALSE	canonical	3	9878	junction_1	292.246851518066	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTATGCCTGAAGTGTC	NA	False	NA	-25	True	AATAAA	-15	NA	4815589	4811012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4811484_4813420_4813612_4814407_4814556_4815161
transcript_49363.known	chr7	+	335	2	FSM	ENSMUSG00000030432.13	ENSMUST00000206617.2	335	2	0	0	0	0	multi-exon	FALSE	canonical	3	6459	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGAGTGCTTGGATTAAG	3216	False	NA	NA	False	NA	NA	NA	4796395	4796823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_4796409_4796501
transcript_49364.known	chr7	+	312	3	FSM	ENSMUSG00000030432.13	ENSMUST00000126794.2	312	3	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_1	3317	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTGCTCATTGAGCT	3412	False	NA	17	True	AATAAA	-32	NA	4796591	4797561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_4796626_4797048_4797182_4797416
transcript_49365.known	chr7	-	1080	6	FSM	ENSMUSG00000052605.13	ENSMUST00000064547.13	1080	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	2.13541565040626	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACCGAACCATTATTGGGT	NA	False	NA	NA	False	AATAAA	-16	NA	4869192	4847957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4848365_4852448_4852567_4853753_4853825_4854022_4854233_4854391_4854533_4869059
transcript_49366.known	chr7	+	1415	3	FSM	ENSMUSG00000035285.7	ENSMUST00000207687.2	1415	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTGCCTGTCTCCTGT	31	True	NA	11	True	AATAAA	-11	NA	4925866	4927999	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_4926062_4926206_4926329_4926901
transcript_49367.known	chr7	-	856	2	FSM	ENSMUSG00000051550.11	ENSMUST00000160225.2	856	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCGAGTGAGGCTGTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	4999157	4995850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_4996552_4999002
transcript_4937.known	chr10	-	471	3	FSM	ENSMUSG00000020219.8	ENSMUST00000218481.2	471	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	1786	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTAGCCGCCCTGAAGTCT	5633	False	NA	NA	False	NA	NA	NA	80736618	80735925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80736167_80736315_80736385_80736457
transcript_49372.nnic	chr7	-	2540	4	NNC	ENSMUSG00000061374.15	novel	2637	3	NA	NA	-62	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	181.586220720504	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	4210	False	NA	-4	True	AATAAA	-14	NA	5016299	5010057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_5010959_5011002_5012205_5015676_5016022_5016207
transcript_49374.nnic	chr7	-	2553	4	NNC	ENSMUSG00000061374.15	novel	2546	3	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	182.145241191992	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	2781	False	NA	-4	True	AATAAA	-14	NA	5017728	5010057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_5010959_5011002_5012205_5015676_5016022_5017623
transcript_49377.known	chr7	-	2306	3	FSM	ENSMUSG00000061374.15	ENSMUST00000208944.2	2306	3	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_2	122.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCTGTGACCTGGTGGAG	4272	False	NA	NA	False	NA	NA	NA	5016237	5010273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_5012205_5015676_5016022_5016207
transcript_49378.known	chr7	-	2637	3	FSM	ENSMUSG00000061374.15	ENSMUST00000167804.9	2637	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	221	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	3257	False	NA	-4	True	AATAAA	-14	NA	5017252	5010057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_5012205_5015676_5016022_5017107
transcript_49379.known	chr7	-	2546	3	FSM	ENSMUSG00000061374.15	ENSMUST00000077385.15	2546	3	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_2	130	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTGTCTTGTTTTTTGAT	2832	False	NA	-4	True	AATAAA	-14	NA	5017677	5010057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_5012205_5015676_5016022_5017623
transcript_49381.known	chr7	+	1142	2	FSM	ENSMUSG00000051184.8	ENSMUST00000086349.5	1142	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCACTGTGTGTTCAGTC	2940	False	NA	5	True	AATAAA	-15	NA	5018468	5021486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_5018560_5020435
transcript_49382.nic	chr7	+	1480	2	ISM	ENSMUSG00000074405.9	ENSMUST00000085427.6	2751	3	9692	-86	938	86	3prime_fragment	FALSE	canonical	3	4	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGCTGGCTAATCTTGAACT	NA	False	NA	2	True	NA	NA	NA	5033260	5036223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_5034279_5035761
transcript_49383.known	chr7	+	1096	2	FSM	ENSMUSG00000055633.7	ENSMUST00000069324.7	1096	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGGTTCTTACTTGCA	2919	False	NA	4	True	AATAAA	-15	NA	5054536	5056722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_5054714_5055803
transcript_49385.known	chr7	-	2153	2	FSM	ENSMUSG00000043290.7	ENSMUST00000062428.5	2153	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGAGTGTCTTGGTTTTTTC	NA	False	NA	NA	False	AATAAA	-41	NA	5041445	5037437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_5039479_5041333
transcript_49386.known	chr7	+	1534	5	FSM	ENSMUSG00000035228.16	ENSMUST00000045543.8	1534	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	4.54835134966506	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGCCCCAGGTCTTACTA	532	False	NA	NA	False	AATAAA	-1	NA	5060195	5063784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_5060659_5060797_5060903_5060990_5061168_5062494_5062705_5063205
transcript_49391.known	chr7	+	2183	12	FSM	ENSMUSG00000030435.17	ENSMUST00000005041.15	2183	12	0	0	0	0	multi-exon	FALSE	canonical	3	1559	junction_7	130.155406157663	551	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGATCCTCATCTGTGTCCA	72	False	NA	33	True	ATTAAA	-23	NA	5065141	5082937	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078227_5078466_5078716_5082180
transcript_49392.known	chr7	+	2088	12	FSM	ENSMUSG00000030435.17	ENSMUST00000209099.2	2088	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	525.567461915969	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGATCCTCATCTGT	35	False	NA	28	True	ATTAAA	-18	NA	5065243	5082932	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_5065336_5069401_5069538_5070208_5070254_5070542_5070647_5071030_5071183_5072442_5072560_5073360_5073500_5077579_5077660_5077733_5077857_5078139_5078239_5078466_5078716_5082180
transcript_49399.known	chr7	+	2565	12	FSM	ENSMUSG00000035203.17	ENSMUST00000098845.10	2565	12	0	0	0	0	multi-exon	TRUE	canonical	3	82	junction_1	31.9772646507711	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTGGCTCCCTTAAATTC	1308	False	NA	21	True	AATAAA	-15	NA	5083233	5101177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_5083477_5085016_5085121_5086661_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098889_5098974_5100152_5100411_5100570
transcript_4940.known	chr10	-	3370	12	FSM	ENSMUSG00000062075.14	ENSMUST00000179022.8	3370	12	0	0	0	0	multi-exon	FALSE	canonical	3	226	junction_8	24.5238962565761	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCTCAGAGTAGATCTTCA	3111	False	NA	-1	True	AATAAA	-17	NA	80754079	80737197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80738735_80739045_80739157_80739283_80739404_80739764_80739873_80739948_80740223_80740386_80740608_80740719_80740846_80740914_80741086_80742984_80743111_80743218_80743376_80745742_80745880_80753797
transcript_49402.known	chr7	+	2127	10	FSM	ENSMUSG00000035203.17	ENSMUST00000208634.2	2127	10	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_7	25.486864203224	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTGTGGCTCCCTTAAAT	2819	False	NA	19	True	AATAAA	-13	NA	5086753	5101175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_5086982_5092917_5093168_5095839_5095965_5096310_5096386_5096897_5096982_5097952_5098257_5098641_5098753_5098886_5098974_5100152_5100411_5100570
transcript_49403.nnic	chr7	-	308	4	NNC	ENSMUSG00000046792.9	novel	880	2	NA	NA	5	1028	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	76.6130247122221	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGGCCCAGTTGGATTT	9631	False	NA	NA	False	NA	NA	NA	6158965	6144256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_6144290_6144320_6144385_6146060_6146150_6158843
transcript_49404.nnic	chr7	-	767	4	NNC	ENSMUSG00000046792.9	novel	576	3	NA	NA	-97	3	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	65.7723346096214	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACTCGAAGTTCATGCCGA	9503	False	NA	-7	True	AATAAA	-19	NA	6159093	6145281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_6145619_6145705_6145797_6146060_6146150_6158843
transcript_49406.nnic	chr7	-	793	4	NNC	ENSMUSG00000046792.9	novel	576	3	NA	NA	-242	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	65.7723346096214	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGCTTCAGTGTTCCTTA	9358	False	NA	NA	False	AATAAA	-16	NA	6159238	6145400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_6145619_6145705_6145797_6146060_6146150_6158843
transcript_49408.known	chr7	-	1897	3	FSM	ENSMUSG00000046792.9	ENSMUST00000094870.3	1897	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	59	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCACTGCCTGTTTCTTGA	9626	False	NA	-1	True	AATAAA	-20	NA	6158970	6134489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_6136171_6146060_6146150_6158843
transcript_49409.known	chr7	-	535	3	FSM	ENSMUSG00000046792.9	ENSMUST00000208746.2	535	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	44	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTGCTTCAGTGTTCCTT	NA	False	NA	NA	False	AATAAA	-15	NA	6158433	6145401	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_6145619_6146060_6146150_6158204
transcript_49410.known	chr7	-	576	3	FSM	ENSMUSG00000046792.9	ENSMUST00000207628.2	576	3	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	37	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGACAACTCGAAGTTCATGC	9600	False	NA	-10	True	AATAAA	-16	NA	6158996	6145284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_6145619_6146060_6146150_6158843
transcript_49413.known	chr7	-	880	2	FSM	ENSMUSG00000046792.9	ENSMUST00000207957.2	880	2	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCTCCACCTGTACACTG	9671	False	NA	-77	True	NA	NA	NA	6158925	6145351	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_6146150_6158843
transcript_49415.known	chr7	+	1648	5	FSM	ENSMUSG00000044876.16	ENSMUST00000108566.8	1648	5	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	66.2740522376593	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGACTCTCCGGTGTTG	2967	False	NA	15	True	AATAAA	-24	NA	6175511	6193420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_6175574_6176980_6177101_6186860_6187202_6191132_6191242_6192404
transcript_49416.known	chr7	+	2467	4	FSM	ENSMUSG00000044876.16	ENSMUST00000054680.12	2467	4	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	90.9004339312464	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCCCGGTTCTCGTTCTTA	2956	False	NA	NA	False	NA	NA	NA	6175500	6194348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_6175574_6186860_6187202_6191132_6191242_6192404
transcript_49417.known	chr7	+	701	3	FSM	ENSMUSG00000044876.16	ENSMUST00000149540.3	701	3	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_2	5.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGTCTAGGTGAAGTCTGC	3018	False	NA	NA	False	AATAAA	-12	NA	6175562	6187430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_6175574_6176980_6177101_6186860
transcript_49418.known	chr7	+	1980	6	FSM	ENSMUSG00000058028.15	ENSMUST00000072662.12	1980	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.49799919935936	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCATTGATTGACTTATT	3080	False	NA	NA	False	ATTAAA	-22	NA	6225276	6242422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_6225336_6227584_6227759_6233070_6233538_6234335_6234537_6236813_6236968_6241497
transcript_49419.nic	chr7	+	1865	5	NIC	ENSMUSG00000058028.15	novel	1980	6	NA	NA	-59	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	3.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTCATTGATTGACTTATT	3021	False	NA	NA	False	ATTAAA	-22	NA	6225217	6242422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_6225336_6233070_6233538_6234335_6234537_6236813_6236968_6241497
transcript_49422.nic	chr7	+	1034	12	ISM	ENSMUSG00000053367.16	ENSMUST00000121024.8	957	16	7533	0	-293	0	3prime_fragment	FALSE	canonical	0	0	junction_4	28.8595916994307	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTGATTCAGTGCGTA	2919	False	NA	6	True	AATAAA	-21	NA	6263241	6284858	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_6263544_6266905_6266933_6269287_6269345_6269828_6269847_6271800_6271807_6272881_6272891_6274395_6274405_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
transcript_49425.known	chr7	+	684	11	FSM	ENSMUSG00000053367.16	ENSMUST00000155248.2	684	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	31.3304963254654	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTGATTCAGTGCGTA	3212	False	NA	6	True	AATAAA	-21	NA	6263534	6284858	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_6263544_6266905_6266933_6269828_6269847_6271800_6271807_6272881_6272891_6274395_6274405_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
transcript_49428.nnic	chr7	+	1001	9	NIC	ENSMUSG00000053367.16	novel	957	16	NA	NA	-293	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_3	27.753096674065	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTTGATTCAGTGCGTA	2919	False	NA	6	True	AATAAA	-21	NA	6263241	6284858	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_6263544_6266905_6266933_6269287_6269345_6274395_6274405_6275974_6276002_6277345_6277373_6280418_6280541_6282412_6282451_6284466
transcript_4943.nic	chr10	-	2022	11	NIC	ENSMUSG00000062075.14	novel	3531	12	NA	NA	-17	0	intron_retention	FALSE	canonical	3	226	junction_7	23.5501592351305	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCACTAGTCCTTGGTCTGT	3094	False	NA	-6	True	NA	NA	NA	80754096	80738631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_80738735_80739045_80739157_80739283_80739404_80739764_80739873_80739948_80740223_80740386_80740608_80740719_80741086_80742984_80743111_80743218_80743376_80745742_80745880_80753797
transcript_49432.known	chr7	+	3672	5	FSM	ENSMUSG00000054893.16	ENSMUST00000086327.12	3672	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	11.1214882097676	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCCCAACTGGAGGTGTCCC	2972	False	NA	NA	False	NA	NA	NA	6289577	6310882	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_6289654_6292356_6292437_6293534_6293662_6296847_6296941_6307586
transcript_49435.known	chr7	-	2550	5	FSM	ENSMUSG00000030443.17	ENSMUST00000062765.14	2550	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5.61248608016091	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTGATTATTTTAATCAT	NA	False	NA	NA	False	AATAAA	-22	NA	6334284	6318658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_6320779_6326645_6326742_6328451_6328579_6332253_6332316_6334139
transcript_49437.nic	chr7	-	427	3	ISM	ENSMUSG00000030443.17	ENSMUST00000135435.2	577	5	-78	2161	3	-1707	5prime_fragment	FALSE	canonical	3	27	junction_2	0.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTCAACTCTATCCCTTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	6334281	6328355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_6328579_6332253_6332316_6334139
transcript_49438.known	chr7	-	512	2	FSM	ENSMUSG00000109080.2	ENSMUST00000208218.2	512	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGCAAATGTTCCTAGAAT	NA	False	NA	NA	False	AATAAA	-20	NA	6347004	6345993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_6346257_6346755
transcript_49440.known	chr7	+	3883	5	FSM	ENSMUSG00000055150.16	ENSMUST00000207347.2	3883	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	5.71729831301464	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTGTGGTGACAATGCTG	2954	False	NA	NA	False	NA	NA	NA	6366278	6384708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_6366347_6374304_6374396_6376125_6376253_6378517_6378614_6381207
transcript_49444.nic	chr7	+	1181	4	ISM	ENSMUSG00000055150.16	ENSMUST00000207347.2	3883	5	17	5279	-13	-1910	5prime_fragment	FALSE	canonical	2	8	junction_1	6.34209919681348	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCGTTCTCCTCATTGTCC	2971	False	NA	NA	False	NA	NA	NA	6366295	6379429	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_6366347_6374304_6374396_6376125_6376253_6378517
transcript_49446.known	chr7	+	4447	7	FSM	ENSMUSG00000062861.9	ENSMUST00000081022.9	4447	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	4.21966296705739	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGTTTTGTGTGTGTGTG	2959	False	NA	NA	False	NA	NA	NA	6386293	6399914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_6386601_6387173_6387266_6392431_6392559_6392752_6392849_6393398_6393560_6395180_6395296_6396365
transcript_4945.known	chr10	+	1284	4	FSM	ENSMUSG00000015312.10	ENSMUST00000015456.10	1284	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_3	10.2089285540757	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTCTCGTTGTATTTTA	248	False	NA	5	True	AATAAA	-14	NA	80765906	80768038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80766194_80766281_80766384_80766862_80767086_80767366
transcript_49452.nnic	chr7	+	2445	5	NNC	ENSMUSG00000109176.2	novel	2801	5	NA	NA	-172	278	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	7.34846922834953	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCCAGACAAACCTAT	2982	False	NA	8	True	AATAAA	-17	NA	6980072	6993545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_6980472_6984231_6984357_6987994_6988152_6989101_6989202_6991881
transcript_49454.known	chr7	+	2801	5	FSM	ENSMUSG00000109176.2	ENSMUST00000208781.2	2801	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	13.3111795119741	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATAGTGGAGCTG	3154	False	NA	30	True	AATAAA	-41	NA	6980244	6994086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_6980472_6984231_6984357_6987998_6988143_6989101_6989202_6991881
transcript_49457.nnic	chr7	+	1124	8	NNC	ENSMUSG00000070837.7	novel	1401	7	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	157.80445145166	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2876	False	NA	20	True	ATTAAA	-21	NA	6998463	7006090	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_6998548_6998659_6998712_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
transcript_49461.nnic	chr7	+	1142	8	NNC	ENSMUSG00000070837.7	novel	1401	7	NA	NA	-34	0	at_least_one_novel_splicesite	FALSE	canonical	2	30	junction_1	154.398107210562	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2880	False	NA	20	True	ATTAAA	-21	NA	6998467	7006090	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_6998525_6998614_6998712_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
transcript_49464.known	chr7	+	1401	7	FSM	ENSMUSG00000070837.7	ENSMUST00000208049.2	1401	7	0	0	0	0	multi-exon	FALSE	canonical	2	56	junction_6	128.262751152988	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2711	False	NA	20	True	ATTAAA	-21	NA	6998298	7006090	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_6998712_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
transcript_49465.known	chr7	+	1320	7	FSM	ENSMUSG00000070837.7	ENSMUST00000207711.2	1320	7	0	0	0	0	multi-exon	FALSE	canonical	2	56	junction_6	160.229696234985	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2914	False	NA	20	True	ATTAAA	-21	NA	6998501	7006090	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_6998834_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
transcript_49466.known	chr7	+	1154	7	FSM	ENSMUSG00000070837.7	ENSMUST00000086248.8	1154	7	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_1	169.856802434678	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTTGCTTGAGTGAGTT	2794	False	NA	20	True	ATTAAA	-21	NA	6998381	7006090	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_6998548_6999266_6999301_6999517_6999710_7000512_7000652_7002977_7003127_7005355_7005531_7005791
transcript_4947.known	chr10	-	3382	4	FSM	ENSMUSG00000048240.15	ENSMUST00000117805.8	3382	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	3.68178700572909	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCTCGACTCTAAATTATTT	4424	False	NA	0	True	AATAAA	-19	NA	80850779	80784457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80787581_80788664_80788781_80833825_80833879_80850689
transcript_49470.known	chr7	-	2042	5	FSM	ENSMUSG00000062116.11	ENSMUST00000056246.8	2042	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	2.54950975679639	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTAATGACTCTTGAGGT	6236	False	NA	-5	True	AATAAA	-21	NA	7124487	7117688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_7119200_7119611_7119711_7120784_7120912_7122370_7122410_7124221
transcript_49471.known	chr7	-	3028	4	FSM	ENSMUSG00000063535.8	ENSMUST00000032622.9	3028	4	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_1	4.32049379893857	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGGTGGTTGCGTCTTTC	NA	False	NA	NA	False	NA	NA	NA	7139754	7133673	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_7136168_7137165_7137250_7138290_7138418_7139431
transcript_49473.known	chr7	+	2725	4	FSM	ENSMUSG00000034538.9	ENSMUST00000051435.8	2725	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	9.89949493661167	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAATCAAGAGTTTCTA	2969	False	NA	NA	False	AATAAA	-29	NA	7174328	7186561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_7174558_7175135_7175175_7177553_7177681_7184231
transcript_49476.known	chr7	-	2777	5	FSM	ENSMUSG00000066838.8	ENSMUST00000074455.9	2777	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	7.29725975966321	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCATGACTATTGTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	7212997	7205115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_7207359_7208511_7208599_7209244_7209372_7210523_7210563_7212716
transcript_49478.known	chr7	-	4607	13	FSM	ENSMUSG00000000605.10	ENSMUST00000000619.8	4607	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_12	13.5592834127275	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTGTCTTTGGTGTCTTTT	NA	False	NA	-1	True	ATTAAA	-21	NA	7302532	7285307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7299722_7299878_7301690_7301836_7302239
transcript_49480.nic	chr7	-	2355	11	ISM	ENSMUSG00000000605.10	ENSMUST00000210594.2	2539	12	484	-47	-7	0	3prime_fragment	FALSE	canonical	3	23	junction_10	8.12465383877984	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAAAAGAAAGCCTTA	NA	False	NA	NA	False	AATGAA	-44	NA	7301777	7287053	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7301690
transcript_49481.known	chr7	-	2445	13	FSM	ENSMUSG00000000605.10	ENSMUST00000210061.2	2445	13	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_5	11.9335544672249	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAAAAAAGAAAGCCTTA	NA	False	NA	NA	False	AATGAA	-44	NA	7301805	7287053	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_7287274_7290644_7290862_7291873_7292273_7293397_7293585_7294409_7294726_7294818_7294956_7296036_7296118_7296913_7297121_7297731_7297855_7297994_7298183_7298968_7299069_7299722_7299878_7301690
transcript_49482.known	chr7	-	658	3	FSM	ENSMUSG00000000605.10	ENSMUST00000210989.2	658	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCACGGACCGCTGTGAAA	NA	False	NA	NA	False	AATAAA	-20	NA	7302556	7300999	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_7301196_7301690_7301836_7302239
transcript_49483.nnic	chr7	-	1550	6	NNC	ENSMUSG00000092574.5	novel	1179	5	NA	NA	-1	280	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	17.1067238242745	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTACCTTTTCAAAGTTTTC	NA	False	NA	NA	False	NA	NA	NA	8096041	8089044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_8089971_8091140_8091228_8091987_8092114_8093259_8093299_8093374_8093465_8095759
transcript_49484.known	chr7	-	915	5	FSM	ENSMUSG00000092574.5	ENSMUST00000172930.4	915	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	6.74536878161602	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTATACTATAGTAGTTTG	NA	False	NA	NA	False	NA	NA	NA	8095837	8089385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_8089971_8091140_8091228_8091987_8092114_8093259_8093299_8095759
transcript_49487.known	chr7	-	825	5	FSM	ENSMUSG00000092490.8	ENSMUST00000174729.2	825	5	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	6.67083203206317	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGTTACATGGGCTAAATG	NA	False	NA	NA	False	NA	NA	NA	8865651	8859275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_8859771_8860940_8861028_8861801_8861928_8863073_8863113_8865573
transcript_49488.known	chr7	-	4199	4	FSM	ENSMUSG00000030393.9	ENSMUST00000032551.8	4199	4	0	0	0	0	multi-exon	TRUE	canonical	3	55	junction_1	5.43650214343336	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAATATGTATTAAGACTT	NA	False	NA	-6	True	NA	NA	NA	10229321	10221155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_10224936_10226205_10226333_10228416_10228456_10229068
transcript_49489.known	chr7	+	1829	4	FSM	ENSMUSG00000070828.11	ENSMUST00000145237.8	1829	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	4.49691252107735	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATGTTTTGTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	11131841	11136245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_11131924_11132578_11133051_11134886_11135047_11135130
transcript_49490.known	chr7	-	2591	4	FSM	ENSMUSG00000034071.16	ENSMUST00000080348.12	2591	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.86744175568088	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAAAAAAAAAAAAAGTGCT	NA	False	NA	NA	False	AATAAA	-16	NA	12156678	12149079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_12151146_12152469_12152594_12155734_12155774_12156316
transcript_49491.known	chr7	+	4748	7	FSM	ENSMUSG00000030386.20	ENSMUST00000098822.10	4748	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_4	11.513277359447	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGATGACCTTTTTATTG	NA	False	NA	NA	False	AATAAA	-17	NA	12212219	12230162	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_12212634_12213590_12213674_12214361_12214419_12214861_12214954_12223496_12223624_12223875_12223972_12226283
transcript_49494.nnic	chr7	+	864	5	NNC	ENSMUSG00000030386.20	novel	4748	7	NA	NA	-2	363	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_4	49.6959505392542	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCCATCTCAGCTGTATC	NA	False	NA	NA	False	AATAAA	-27	NA	12212229	12218191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_12212634_12213590_12213674_12214361_12214419_12214861_12214954_12217963
transcript_49495.known	chr7	+	3509	4	FSM	ENSMUSG00000030386.20	ENSMUST00000123589.8	3509	4	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_3	4.98887651569859	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTTTGTAATGTCTGAAG	NA	False	NA	NA	False	NA	NA	NA	12212231	12217828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_12212634_12213590_12213674_12214361_12214419_12214861
transcript_49496.known	chr7	-	6727	2	FSM	ENSMUSG00000057894.11	ENSMUST00000072222.8	6727	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCTGATTTTTTAAAAATTG	NA	False	NA	-12	True	NA	NA	NA	12552785	12538908	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_12545594_12552743
transcript_4950.known	chr10	-	3680	4	FSM	ENSMUSG00000046822.15	ENSMUST00000059551.7	3680	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	25.0377492776186	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATTTATTTGTTTTTTTT	NA	False	NA	NA	False	TTTAAA	-4	NA	80873142	80864373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80867535_80869445_80869768_80870751_80870844_80873037
transcript_49500.known	chr7	+	3591	8	FSM	ENSMUSG00000058638.15	ENSMUST00000004614.15	3591	8	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_1	17.0617127163813	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGCTGGACTATAGCGTGT	NA	False	NA	27	True	NA	NA	NA	12568687	12584504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_12569092_12569373_12569455_12570219_12570347_12571015_12571112_12578358_12578833_12580722_12580824_12581898_12582026_12582323
transcript_49501.known	chr7	+	2995	2	FSM	ENSMUSG00000054715.12	ENSMUST00000117189.2	2995	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTGGGCTTCTCCAACATC	NA	False	NA	30	True	AATAAA	-41	NA	12631762	12643010	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_12631908_12640160
transcript_49502.known	chr7	+	2087	2	FSM	ENSMUSG00000054715.12	ENSMUST00000119989.3	2087	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGTCTGTTGTCTTATG	NA	False	NA	NA	False	NA	NA	NA	12631793	12642170	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_12631871_12640160
transcript_49503.known	chr7	+	794	6	FSM	ENSMUSG00000012848.16	ENSMUST00000108539.8	794	6	0	0	0	0	multi-exon	FALSE	canonical	3	946	junction_1	6466.78878578851	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTCCTGTGTGCTTGTCT	NA	False	NA	37	True	AATAAA	-23	NA	12656216	12660612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_12656350_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
transcript_49505.known	chr7	+	761	6	FSM	ENSMUSG00000012848.16	ENSMUST00000004554.14	761	6	0	0	0	0	multi-exon	FALSE	canonical	3	14799	junction_5	1601.25238485381	13309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCTGTGTGCTTGTCTA	NA	False	NA	38	True	AATAAA	-24	NA	12656216	12660613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12659793_12660322_12660422_12660498
transcript_49506.known	chr7	+	1248	5	FSM	ENSMUSG00000012848.16	ENSMUST00000139349.3	1248	5	0	0	0	0	multi-exon	FALSE	canonical	3	14799	junction_4	1606.02496478106	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTTCCTGTGTGCTTGTC	NA	False	NA	36	True	AATAAA	-22	NA	12656257	12660611	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_12656316_12656899_12657009_12659318_12659529_12659663_12660422_12660498
transcript_49507.known	chr7	-	2288	10	FSM	ENSMUSG00000030382.16	ENSMUST00000032539.14	2288	10	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_2	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTGTGTGGATTTGAAC	NA	False	NA	NA	False	AATAAA	-20	NA	12732077	12722272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_12722580_12722659_12722791_12722936_12723035_12723280_12723480_12724893_12724985_12725071_12725267_12727241_12727367_12728806_12728966_12730157_12730368_12731304
transcript_49510.known	chr7	+	3245	17	FSM	ENSMUSG00000005566.15	ENSMUST00000005705.8	3245	17	0	0	0	0	multi-exon	FALSE	canonical	3	3307	junction_7	380.550172242439	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCATGCCTCAGCTGTCTG	NA	False	NA	58	True	AATAAA	-19	NA	12758078	12764962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_12758989_12759230_12759344_12759570_12759704_12761543_12761680_12761759_12761877_12761947_12762063_12762334_12762482_12762590_12762706_12762807_12762915_12763014_12763052_12763133_12763180_12763269_12763523_12763602_12763923_12764009_12764134_12764215_12764303_12764381_12764520_12764615
transcript_49511.nic	chr7	-	1253	2	ISM	ENSMUSG00000049600.9	ENSMUST00000051390.9	2171	3	2224	0	2194	0	3prime_fragment	FALSE	canonical	3	196	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGGGATTTTAGGATTCCAA	NA	False	NA	-45	True	NA	NA	NA	12741533	12739637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_12740308_12740950
transcript_49514.known	chr7	-	930	6	FSM	ENSMUSG00000033916.6	ENSMUST00000210587.2	930	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	1091.38616447159	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGGCTGTGAGCTTATGA	7091	False	NA	-7	True	AATAAA	-21	NA	12768578	12765936	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768428
transcript_49515.known	chr7	-	949	6	FSM	ENSMUSG00000033916.6	ENSMUST00000005711.6	949	6	0	0	0	0	multi-exon	FALSE	canonical	3	2610	junction_5	213.695671458268	1366	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	6935	False	NA	-11	True	AATAAA	-17	NA	12768734	12765940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766568_12766749_12767755_12767970_12768561
transcript_49519.known	chr7	-	726	6	FSM	ENSMUSG00000033916.6	ENSMUST00000211626.2	726	6	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_3	1108.87882115225	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAATTTACCAAGGCTGTG	7003	False	NA	-16	True	AATAAA	-12	NA	12768666	12765945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12766718_12766749_12767755_12767970_12768561
transcript_49520.known	chr7	-	606	5	FSM	ENSMUSG00000033916.6	ENSMUST00000211344.2	606	5	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_3	1201.14705594278	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	7098	False	NA	-11	True	AATAAA	-17	NA	12768571	12765940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_12766130_12766215_12766278_12766361_12766493_12767755_12767970_12768561
transcript_49522.known	chr7	-	888	5	FSM	ENSMUSG00000033916.6	ENSMUST00000209487.2	888	5	0	0	0	0	multi-exon	FALSE	canonical	3	2610	junction_4	222.956273739942	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACCAAGGCTGTGAGCTT	7072	False	NA	-11	True	AATAAA	-17	NA	12768597	12765940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_12766130_12766215_12766278_12766361_12766749_12767755_12767970_12768561
transcript_49528.known	chr7	-	801	6	FSM	ENSMUSG00000005575.17	ENSMUST00000125964.8	801	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	904.553503116317	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGGCAATGGGCCTGGGTC	9089	False	NA	-94	True	NA	NA	NA	12771554	12769255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_12769682_12769768_12769833_12770138_12770243_12770360_12770400_12770492_12770588_12771481
transcript_49529.known	chr7	-	1472	6	FSM	ENSMUSG00000005575.17	ENSMUST00000005714.14	1472	6	0	0	0	0	multi-exon	FALSE	canonical	3	1870	junction_5	193.215320303541	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCCTCTGCCTCTTCCTTC	8443	False	NA	-3	True	ATTAAA	-17	NA	12772200	12769164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_12769682_12769768_12769833_12770138_12770243_12770360_12770400_12770492_12770588_12771547
transcript_49531.known	chr7	+	3174	28	FSM	ENSMUSG00000056394.21	ENSMUST00000177588.10	3174	28	0	0	0	0	multi-exon	TRUE	canonical	3	470	junction_1	193.081793225492	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGTGAGGAGGTCTACA	1107	False	NA	30	True	AATAAA	-18	NA	13011238	13045350	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_13011456_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
transcript_49536.known	chr7	+	3091	28	FSM	ENSMUSG00000056394.21	ENSMUST00000098814.13	3091	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	267.791767474326	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGTGAGGAGGTCTACA	2620	False	NA	30	True	AATAAA	-18	NA	13012751	13045350	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
transcript_49537.known	chr7	+	3166	28	FSM	ENSMUSG00000056394.21	ENSMUST00000165964.10	3166	28	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_1	177.886980349259	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTTGGTGAGGAGGTCTACA	3059	False	NA	30	True	AATAAA	-18	NA	13013190	13045350	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_13013400_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589_13022686_13023319_13023422_13025112_13025239_13025381_13025458_13026064_13026146_13026384_13026442_13029307_13029481_13030153_13030321_13030645_13030723_13032662_13032755_13032965_13033066_13034187_13034274_13034856_13034973_13035309_13035406_13037109_13037221_13037725_13037798_13039835_13039981_13040137_13040221_13041443_13041597_13042395_13042450_13043037_13043182_13044933_13045027_13045120
transcript_49542.nic	chr7	+	945	6	ISM	ENSMUSG00000056394.21	ENSMUST00000146998.9	944	9	-312	2773	-303	-2773	5prime_fragment	FALSE	canonical	0	0	junction_1	535.999104476864	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAGAAAGAAGAAGGTGAG	2317	False	NA	NA	False	AAGAAA	-2	NA	13012448	13022670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_13012886_13014073_13014148_13016378_13016469_13019182_13019319_13020483_13020611_13022589
transcript_49544.known	chr7	-	3346	4	FSM	ENSMUSG00000070814.18	ENSMUST00000108532.11	3346	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	5.18544972870135	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCAGGCTGAGTTCGTG	1644	False	NA	-6	True	AATAAA	-14	NA	13012647	12992894	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_12995567_13003260_13003574_13011071_13011355_13012569
transcript_49545.known	chr7	-	612	1	FSM	ENSMUSG00000074547.5	ENSMUST00000092523.3	612	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	97	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTCATGCGTAGTGTAATA	NA	False	NA	NA	False	NA	NA	NA	13067182	13066570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_13066600_13067200
transcript_49547.known	chr7	-	1344	3	FSM	ENSMUSG00000041583.9	ENSMUST00000108513.5	1344	3	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	9.5	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGCCAGTTTTTACCCCC	NA	False	NA	20	True	AATAAA	-36	NA	15573603	15567165	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_15567876_15568304_15568891_15573555
transcript_49548.known	chr7	+	934	5	FSM	ENSMUSG00000074365.14	ENSMUST00000098801.9	934	5	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_3	373.339992500134	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTGCTTTAAAAGAAAAT	NA	False	NA	-11	True	AATAAA	-24	NA	15630048	15637945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_15630183_15631328_15631478_15632369_15632542_15636774_15636933_15637624
transcript_49549.known	chr7	+	2090	3	FSM	ENSMUSG00000074365.14	ENSMUST00000150050.3	2090	3	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_2	3	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGATCTGTGCCTGCTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	15630095	15634223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_15630183_15631328_15631478_15632369
transcript_49552.known	chr7	+	571	3	FSM	ENSMUSG00000074365.14	ENSMUST00000171280.3	571	3	0	0	0	0	multi-exon	FALSE	canonical	3	864	junction_1	106.5	455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGACTGCTTTAAAAGAAAAT	NA	False	NA	-11	True	AATAAA	-24	NA	15635570	15637945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_15635663_15636774_15636933_15637624
transcript_49554.known	chr7	-	736	6	FSM	ENSMUSG00000041571.11	ENSMUST00000044355.11	736	6	0	0	0	0	multi-exon	FALSE	canonical	3	1985	junction_1	35.4028247460566	740	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGATGTTTATTTTGGCT	NA	False	NA	-11	True	AATAAA	-21	NA	15656327	15651132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_15651465_15653772_15653872_15653967_15654043_15654229_15654284_15654373_15654399_15656176
transcript_4956.nic	chr10	-	2190	12	NIC	ENSMUSG00000004937.7	novel	1964	12	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	99	junction_11	260.894741448927	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTCTCTGCTTCCTGT	4756	False	NA	-13	True	AATAAA	-15	NA	80896028	80879910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895751
transcript_49560.known	chr7	-	1455	13	FSM	ENSMUSG00000041560.13	ENSMUST00000198688.5	1455	13	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_12	551.142065522936	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGCTGGGGTCTTGTTAT	NA	False	NA	-9	True	AATAAA	-12	NA	15679726	15671762	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_15671815_15672098_15672156_15672276_15672354_15672835_15672903_15673013_15673190_15673378_15673580_15673653_15673759_15674062_15674159_15675664_15675736_15676099_15676300_15676713_15676823_15679214_15679280_15679547
transcript_49564.known	chr7	+	1630	12	FSM	ENSMUSG00000006021.6	ENSMUST00000006178.5	1630	12	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_5	5.62609034427847	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCTTTGTCTGGCAAGCA	NA	False	NA	32	True	NA	NA	NA	15853819	15861441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_15854107_15854414_15854498_15854636_15854722_15854794_15854850_15856959_15857036_15857124_15857199_15857696_15857807_15857879_15857958_15858641_15858718_15859637_15859774_15859861_15860033_15861042
transcript_4957.known	chr10	-	1964	12	FSM	ENSMUSG00000004937.7	ENSMUST00000218208.2	1964	12	0	0	0	0	multi-exon	TRUE	canonical	3	688	junction_11	105.465203223192	396	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGCCTCTCTGCTTCCTGT	4772	False	NA	-13	True	AATAAA	-15	NA	80896012	80879910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80880838_80882023_80882147_80882308_80882399_80883472_80883511_80884213_80884277_80884671_80884811_80885086_80885192_80885615_80885716_80886832_80886918_80887056_80887164_80887949_80888086_80895961
transcript_49574.nic	chr7	+	1430	4	ISM	ENSMUSG00000006021.6	ENSMUST00000006178.5	1630	12	-36	5708	-36	284	5prime_fragment	FALSE	canonical	3	83	junction_1	1.88561808316413	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGAAAGTGGGTTCATTT	NA	False	NA	NA	False	NA	NA	NA	15853783	15855733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_15854107_15854414_15854498_15854636_15854722_15854794
transcript_49575.known	chr7	+	1731	13	FSM	ENSMUSG00000041420.19	ENSMUST00000002495.18	1731	13	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	4.17997873466148	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAATTCTCATTTGTCTT	7694	False	NA	NA	False	AATAAA	-17	NA	15909354	15920429	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15912721_15912875_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919443_15919981
transcript_49576.known	chr7	+	1839	13	FSM	ENSMUSG00000041420.19	ENSMUST00000176506.8	1839	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	5.65439848456246	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAATTCTCATTTGTCTT	7539	False	NA	NA	False	AATAAA	-17	NA	15909199	15920429	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15912721_15912926_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919447_15919981
transcript_49577.known	chr7	+	1925	12	FSM	ENSMUSG00000041420.19	ENSMUST00000175946.8	1925	12	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	3.73723723474445	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATCAAAATTCTCATTTGT	7652	False	NA	NA	False	AATAAA	-14	NA	15909312	15920426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_15909493_15911316_15911499_15911633_15911794_15911885_15911937_15912669_15913026_15915965_15916078_15916244_15916394_15917715_15917793_15917962_15918022_15918559_15918644_15919372_15919443_15919981
transcript_49578.nic	chr7	-	2169	14	NIC	ENSMUSG00000041375.20	novel	2175	14	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	66.5924636352925	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGAACTGTGCTGCTAG	NA	False	NA	-5	True	ATTAAA	-17	NA	16020730	16007966	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_16008342_16009204_16009301_16009662_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
transcript_49580.known	chr7	-	2175	14	FSM	ENSMUSG00000041375.20	ENSMUST00000118976.10	2175	14	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	66.2157134678708	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACCTTTGAACTGTGCTGC	NA	False	NA	-8	True	ATTAAA	-14	NA	16020715	16007969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_16008342_16009180_16009301_16009662_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
transcript_49584.nic	chr7	-	1959	12	ISM	ENSMUSG00000041375.20	ENSMUST00000118976.10	2175	14	-15	1432	-10	0	5prime_fragment	FALSE	canonical	3	130	junction_1	29.1238449918179	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGACACCCACCCCACT	NA	False	NA	-14	True	AATAAA	-14	NA	16020730	16009401	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_16010033_16010126_16010221_16010418_16010555_16010651_16010699_16012281_16012464_16014522_16014697_16014782_16014867_16016281_16016531_16016676_16016776_16018195_16018301_16018419_16018472_16020624
transcript_49589.known	chr7	-	1254	10	FSM	ENSMUSG00000052833.10	ENSMUST00000210999.2	1254	10	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	915.179615373431	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCACCTGGCCGTCTCTCC	NA	False	NA	NA	False	NA	NA	NA	16121731	16054666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_16054806_16061755_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
transcript_49593.known	chr7	-	1663	9	FSM	ENSMUSG00000052833.10	ENSMUST00000211741.2	1663	9	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	1013.32101743475	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCCCAGACTTGGCACTT	NA	False	NA	NA	False	NA	NA	NA	16121731	16054158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_16054806_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
transcript_496.nnic	chr1	-	1200	8	NNC	ENSMUSG00000026134.12	novel	1975	14	NA	NA	210	0	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_7	107.409572788139	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGTGCAAGTGGGAGTC	8787	False	NA	-2	True	AATAAA	-18	NA	33661013	33492890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_33493386_33503133_33503203_33519538_33519622_33523762_33523890_33551096_33551283_33553225_33553299_33572376_33572445_33660914
transcript_49601.known	chr7	-	1875	9	FSM	ENSMUSG00000052833.10	ENSMUST00000094815.5	1875	9	0	0	0	0	multi-exon	FALSE	canonical	3	2941	junction_6	113.453115316416	2266	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTTGTCTCCTCTGTTT	NA	False	NA	-4	True	AATAAA	-17	NA	16121710	16060974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_16061855_16064537_16064608_16070618_16070764_16092960_16093067_16100731_16100832_16102433_16102577_16104211_16104386_16112289_16112402_16121565
transcript_49610.known	chr7	+	815	3	FSM	ENSMUSG00000019158.10	ENSMUST00000019302.10	815	3	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_1	16.5	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAGACTCTGAGTGATA	NA	False	NA	16	True	ATTAAA	-17	NA	16186703	16189415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_16187096_16188045_16188139_16189085
transcript_49611.known	chr7	+	504	6	FSM	ENSMUSG00000008036.12	ENSMUST00000205590.2	504	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	297.131889907495	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCCTGGCAGGAGAGATCC	NA	False	NA	NA	False	NA	NA	NA	16472396	16482859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_16472464_16477143_16477294_16477515_16477606_16481185_16481300_16482613_16482674_16482836
transcript_49613.known	chr7	+	836	5	FSM	ENSMUSG00000008036.12	ENSMUST00000086112.8	836	5	0	0	0	0	multi-exon	FALSE	canonical	3	580	junction_2	14.0423466699836	766	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCTGTCTGAGCCCTCAT	NA	False	NA	19	True	AATAAA	-19	NA	16472334	16483219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_16472464_16477143_16477294_16481185_16481300_16482613_16482674_16482836
transcript_49616.known	chr7	+	2764	9	FSM	ENSMUSG00000001918.18	ENSMUST00000108496.9	2764	9	0	0	0	0	multi-exon	FALSE	canonical	3	1461	junction_5	112.684293492927	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16515264	16532199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
transcript_49620.nnic	chr7	+	1784	9	NNC	ENSMUSG00000001918.18	novel	853	3	NA	NA	134	0	at_least_one_novel_splicesite	FALSE	canonical	2	41	junction_1	534.082800228579	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16518796	16532199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_16518953_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
transcript_49623.nnic	chr7	+	1806	9	NNC	ENSMUSG00000001918.18	novel	853	3	NA	NA	155	0	at_least_one_novel_splicesite	FALSE	canonical	1	18	junction_1	541.52318452214	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGTGTTGTCACATGTCT	NA	False	NA	73	True	NA	NA	NA	16518817	16532199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_16518996_16519600_16519644_16520273_16520319_16520795_16520838_16523701_16523863_16527571_16527806_16529682_16529878_16529948_16530084_16531426
transcript_49626.known	chr7	+	475	4	FSM	ENSMUSG00000001918.18	ENSMUST00000206444.2	475	4	0	0	0	0	multi-exon	FALSE	canonical	3	1525	junction_3	60.7124369466422	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	16516322	16521104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_16516401_16519600_16519644_16520273_16520319_16520795
transcript_49627.known	chr7	-	2290	6	FSM	ENSMUSG00000019370.11	ENSMUST00000019514.10	2290	6	0	0	0	0	multi-exon	FALSE	canonical	3	2296	junction_1	82.9925297843125	244	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGACTCTTCCGTCTG	NA	False	NA	-14	True	AATAAA	-15	NA	16658039	16649303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_16650902_16650999_16651136_16651310_16651418_16651509_16651654_16653559_16653591_16657765
transcript_49636.known	chr7	-	2072	13	FSM	ENSMUSG00000003099.12	ENSMUST00000003183.12	2072	13	0	0	0	0	multi-exon	FALSE	canonical	3	1050	junction_5	57.0079794609686	446	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCTCGACGTGTGTCCA	NA	False	NA	-3	True	AATAAA	-37	NA	16761841	16738564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
transcript_49637.nnic	chr7	-	1959	13	NNC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	317.791718565618	69	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCTCGACGTGTGTCCA	NA	False	NA	-3	True	AATAAA	-37	NA	16761763	16738564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16742917_16742984_16743799_16743922_16749322_16749471_16756374_16756582_16761617
transcript_49638.known	chr7	-	1786	12	FSM	ENSMUSG00000003099.12	ENSMUST00000142597.2	1786	12	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_8	327.971022707094	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCCTCAGGGTGGGGCAA	NA	False	NA	-116	True	NA	NA	NA	16761734	16738677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742638_16743799_16743922_16749322_16749471_16756339_16756582_16761617
transcript_49639.nic	chr7	-	2366	12	NIC	ENSMUSG00000003099.12	novel	2072	13	NA	NA	-6	0	intron_retention	FALSE	canonical	3	1050	junction_5	58.5383959607102	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCTCGACGTGTGTCCA	NA	False	NA	-3	True	AATAAA	-37	NA	16761855	16738564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_16739097_16739185_16739268_16739984_16740164_16740256_16740298_16740831_16740920_16741028_16741172_16741650_16741757_16742538_16742984_16743799_16743922_16749322_16749471_16756339_16756582_16761617
transcript_49643.nnic	chr7	+	578	3	NNC	ENSMUSG00000030413.8	novel	520	4	NA	NA	-2386	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	118	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTCCCTCCGGTGAATC	NA	False	NA	6	True	AATAAA	-15	NA	18616218	18624366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_18616397_18623202_18623325_18624088
transcript_49644.known	chr7	+	694	3	FSM	ENSMUSG00000030413.8	ENSMUST00000032573.8	694	3	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	21	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTCCCTCCGGTGAATC	NA	False	NA	6	True	AATAAA	-15	NA	18618604	18624366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_18618899_18623202_18623325_18624088
transcript_49647.nnic	chr7	-	1915	15	NNC	ENSMUSG00000074358.10	novel	2022	14	NA	NA	-6	0	at_least_one_novel_splicesite	TRUE	canonical	3	21	junction_14	56.2710278156404	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAGTGTGTGATTCAA	2771	False	NA	-1	True	AATAAA	-18	NA	18644329	18624807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627691_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057_18644183_18644278
transcript_49649.nnic	chr7	-	1903	15	NNC	ENSMUSG00000074358.10	novel	2022	14	NA	NA	-6	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_14	61.318672456575	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAGTGTGTGATTCAA	2771	False	NA	-1	True	AATAAA	-18	NA	18644329	18624807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627703_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057_18644183_18644278
transcript_49651.known	chr7	-	2022	14	FSM	ENSMUSG00000074358.10	ENSMUST00000098780.10	2022	14	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_7	27.4902887640592	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAGTGTGTGATTCAA	2760	False	NA	-1	True	AATAAA	-18	NA	18644340	18624807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627691_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
transcript_49656.nic	chr7	-	2009	14	NIC	ENSMUSG00000074358.10	novel	2022	14	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	82	junction_7	38.5657050949086	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCCTAGTGTGTGATTCAA	2761	False	NA	-1	True	AATAAA	-18	NA	18644339	18624807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627703_18627775_18627859_18628071_18633482_18633639_18634843_18635002_18637394_18637478_18637706_18637865_18644057
transcript_49668.known	chr7	-	1961	14	FSM	ENSMUSG00000074358.10	ENSMUST00000135467.8	1961	14	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_10	61.8715026505473	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCCCTAGTGTGTGATTCA	2777	False	NA	-2	True	AATAAA	-17	NA	18644323	18624808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_18625099_18625239_18625313_18625963_18626025_18626198_18626278_18626362_18626509_18626922_18626999_18627109_18627274_18627703_18627775_18627859_18628071_18633482_18633608_18634843_18635002_18637394_18637478_18637706_18637865_18644057
transcript_49669.known	chr7	+	2734	1	FSM	ENSMUSG00000044030.5	ENSMUST00000053713.5	2734	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGATGGTACTGAGATTCTGA	NA	False	NA	21	True	ATTAAA	-27	NA	18737968	18740702	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_18738000_18740700
transcript_49670.known	chr7	+	4116	27	FSM	ENSMUSG00000023118.16	ENSMUST00000023882.14	4116	27	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_24	19.2187654844311	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGAGGATGTGCCTGTGT	NA	False	NA	15	True	AATAAA	-29	NA	18758301	18788542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_18758432_18762788_18762913_18763039_18763106_18764467_18764522_18764603_18764678_18768331_18768459_18769750_18770001_18770586_18770758_18771784_18772025_18774014_18774170_18774466_18774618_18776502_18776708_18777349_18777501_18778859_18779096_18779556_18779639_18779772_18779887_18780679_18780828_18781374_18781536_18782373_18782483_18782764_18782866_18783304_18783396_18783862_18783965_18786291_18786480_18787194_18787372_18787471_18787568_18787839_18788224_18788313
transcript_49671.known	chr7	-	2710	7	FSM	ENSMUSG00000030407.3	ENSMUST00000032566.3	2710	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_4	5.82380173655205	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATTAAAAACCAAAAA	7204	False	NA	NA	False	NA	NA	NA	18883216	18873626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_18875225_18877110_18877228_18878584_18878685_18878808_18878962_18880794_18881077_18882300_18882445_18882900
transcript_49674.known	chr7	+	4873	2	FSM	ENSMUSG00000050428.8	ENSMUST00000053109.5	4873	2	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAATAAAATTATAAAAAAAA	9337	False	NA	NA	False	NA	NA	NA	18853783	18874097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_18853862_18869302
transcript_49675.known	chr7	+	1420	3	FSM	ENSMUSG00000040824.4	ENSMUST00000049294.4	1420	3	0	0	0	0	multi-exon	FALSE	canonical	3	3249	junction_1	86	1021	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGAGCTCTCTCTTTTGTTCT	NA	False	NA	NA	False	NA	NA	NA	18883646	18887467	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_18883820_18885142_18885323_18886400
transcript_49679.nic	chr7	+	2537	21	ISM	ENSMUSG00000040811.16	ENSMUST00000117338.8	2765	22	2915	-222	-1834	0	3prime_fragment	FALSE	canonical	3	14	junction_1	46.9870992933167	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCTGGAGTCTGGTCT	NA	False	NA	22	True	AATACA	-14	NA	18913260	18940404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_18913371_18913450_18913575_18913675_18913781_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
transcript_4968.known	chr10	+	2832	13	FSM	ENSMUSG00000004929.13	ENSMUST00000005057.7	2832	13	0	0	0	0	multi-exon	TRUE	canonical	3	459	junction_3	51.2387521532504	173	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATATCAGACAGTGAGCA	5450	False	NA	NA	False	NA	NA	NA	80905868	80918393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_80906113_80908986_80909200_80911344_80911494_80912776_80912885_80913746_80913850_80914303_80914465_80915291_80915428_80915704_80916072_80916246_80916449_80916860_80917048_80917140_80917270_80917433_80917571_80917697
transcript_49680.known	chr7	+	2255	19	FSM	ENSMUSG00000040811.16	ENSMUST00000120595.8	2255	19	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	24.7224719088515	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGGAGTCTGGTCTATT	NA	False	NA	25	True	AATACA	-17	NA	18915094	18940407	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_18915149_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
transcript_49681.nic	chr7	+	2356	19	NIC	ENSMUSG00000040811.16	novel	2255	19	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_1	28.4707452191426	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCTGGAGTCTGGTCT	NA	False	NA	22	True	AATACA	-14	NA	18915122	18940404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_18915281_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
transcript_49682.nic	chr7	+	2280	19	NIC	ENSMUSG00000040811.16	novel	2255	19	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	33.4490583749803	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCTGGAGTCTGGTCT	NA	False	NA	22	True	AATACA	-14	NA	18915128	18940404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_18915211_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
transcript_49683.nic	chr7	+	2333	19	Fusion	ENSMUSG00000040811.16_ENSMUSG00000065543.3	novel	593	5	NA	NA	-51	0	multi-exon	FALSE	canonical	3	11	junction_1	34.4726139291918	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGTCTGGAGTCTGGTCT	NA	False	NA	22	True	AATACA	-14	NA	18915338	18940404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr7_+_18915474_18915633_18915663_18916194_18916325_18918730_18918881_18920026_18920097_18920185_18920297_18924642_18924739_18925508_18925644_18927933_18928034_18930121_18930277_18930417_18930544_18934424_18934557_18935048_18935117_18935489_18935579_18935754_18935853_18936433_18936522_18936901_18936998_18937826_18937958_18940010
transcript_49685.known	chr7	+	3366	2	FSM	ENSMUSG00000052214.10	ENSMUST00000063976.9	3366	2	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCTTCAATTTTAT	3233	False	NA	9	True	AATAAA	-14	NA	18962258	18981793	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_18962510_18978678
transcript_49688.known	chr7	+	1390	2	FSM	ENSMUSG00000052214.10	ENSMUST00000161711.2	1390	2	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAGTGTCTCAAACCATT	3282	False	NA	NA	False	ATTAAA	-14	NA	18962307	18990468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_18962510_18989280
transcript_49693.known	chr7	-	2215	13	FSM	ENSMUSG00000030403.10	ENSMUST00000032561.9	2215	13	0	0	0	0	multi-exon	TRUE	canonical	3	1236	junction_9	117.461666323765	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19005742	18990853	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994991_18995100_18995139_18995899_18995985_18998329_18998496_18998578_18998751_19005438
transcript_49699.nnic	chr7	-	2138	11	NNC	ENSMUSG00000030403.10	novel	2215	13	NA	NA	-362	0	at_least_one_novel_splicesite	FALSE	canonical	3	142	junction_8	402.203443545676	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTCTGGAGTACTTTAAA	NA	False	NA	NA	False	AATAAA	-24	NA	19006104	18990853	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_18991680_18991786_18991845_18992727_18992819_18992898_18992945_18993156_18993191_18993340_18993393_18994505_18994607_18994748_18994796_18998450_18998496_18998578_18998751_19005438
transcript_49709.known	chr7	-	1648	5	FSM	ENSMUSG00000030402.6	ENSMUST00000032560.6	1648	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	5.35607132140714	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTTTCTTCGTTGTTGT	9555	False	NA	1	True	AATAAA	-17	NA	19013989	19010729	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19011135_19011874_19011936_19012009_19012116_19012194_19012313_19013031
transcript_49710.known	chr7	+	1076	7	FSM	ENSMUSG00000030401.17	ENSMUST00000108468.5	1076	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	28.3279406632784	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCATTCTGTGTTTTAAAG	580	False	NA	12	True	AATAAA	-20	NA	19024993	19030085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_19025102_19027000_19027209_19027527_19027667_19027772_19027843_19028343_19028391_19029375_19029435_19029640
transcript_49711.nnic	chr7	-	2195	4	NNC	ENSMUSG00000047649.10	novel	2239	3	NA	NA	13	7	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	112.490987293304	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTTACTTTTGATACATG	2171	False	NA	-12	True	NA	NA	NA	19093393	19089931	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_19090087_19090124_19091942_19093014_19093157_19093312
transcript_49714.known	chr7	-	2239	3	FSM	ENSMUSG00000047649.10	ENSMUST00000047036.10	2239	3	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	10	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAATGTCTTACTTTTG	2158	False	NA	-19	True	NA	NA	NA	19093406	19089938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19091942_19093014_19093157_19093312
transcript_49715.known	chr7	+	3578	23	FSM	ENSMUSG00000030400.18	ENSMUST00000062831.16	3578	23	0	0	0	0	multi-exon	TRUE	canonical	3	88	junction_1	20.1272809394744	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGGGTTTGCTTCTGATAT	NA	False	NA	13	True	AATAAA	-21	NA	19115934	19129619	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_19115985_19116203_19116304_19117868_19117947_19118023_19118087_19118226_19118341_19119547_19119665_19119754_19119872_19120631_19120756_19120856_19120954_19121037_19121172_19121253_19121423_19122064_19122184_19124031_19124102_19124173_19124244_19124323_19124426_19125451_19125516_19125889_19126012_19127173_19127267_19127357_19127431_19127554_19127626_19127700_19127845_19127963_19128108_19128276
transcript_49716.known	chr7	-	1849	13	FSM	ENSMUSG00000040714.15	ENSMUST00000108459.9	1849	13	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_12	5.52959210872636	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTGCGATCTGCTCA	6332	False	NA	NA	False	NA	NA	NA	19133846	19128364	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19128647_19128809_19128874_19128985_19129093_19129163_19129205_19129289_19129381_19129724_19129899_19130206_19130309_19130431_19130520_19130796_19131017_19131325_19131396_19131886_19132118_19133208_19133475_19133733
transcript_49717.known	chr7	-	1823	13	FSM	ENSMUSG00000040714.15	ENSMUST00000108458.10	1823	13	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_12	5.99247212944893	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGCGATCTGCTCAATT	2149	False	NA	NA	False	NA	NA	NA	19138029	19128361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19128647_19128809_19128874_19128985_19129093_19129163_19129205_19129289_19129381_19129724_19129899_19130206_19130309_19130431_19130520_19130796_19131017_19131325_19131396_19131886_19132118_19133208_19133475_19137945
transcript_49724.known	chr7	+	719	5	FSM	ENSMUSG00000002043.18	ENSMUST00000147114.2	719	5	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	197.958802532244	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	505	False	NA	21	True	AGTAAA	-22	NA	19242634	19250070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_19242758_19248346_19248465_19248931_19249016_19249128_19249223_19249770
transcript_49725.known	chr7	+	734	5	FSM	ENSMUSG00000002043.18	ENSMUST00000136873.8	734	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_2	250.202293154959	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGACCTGTGCAGTGCT	465	False	NA	14	True	AGTAAA	-15	NA	19242594	19250063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_19242758_19248346_19248465_19248949_19249016_19249128_19249223_19249770
transcript_49728.known	chr7	+	785	6	FSM	ENSMUSG00000002043.18	ENSMUST00000002112.15	785	6	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_1	62.2009646227452	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTGCAGTGCTTATCACA	507	False	NA	21	True	AGTAAA	-22	NA	19242636	19250070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_19242758_19248125_19248194_19248346_19248465_19248931_19249016_19249128_19249223_19249770
transcript_49729.known	chr7	+	651	6	FSM	ENSMUSG00000002043.18	ENSMUST00000108455.8	651	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	201.035917188944	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGACCTGTGCAGTGCTTAT	521	False	NA	17	True	AGTAAA	-18	NA	19242650	19250066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_19242758_19248125_19248194_19248346_19248465_19248931_19249016_19249128_19249223_19249886
transcript_49731.known	chr7	+	1530	3	FSM	ENSMUSG00000011267.9	ENSMUST00000108453.2	1530	3	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_1	5.5	124	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGGACTTTCTTGGGGT	727	False	NA	26	True	AATAAA	-21	NA	19311211	19314581	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_19311554_19311741_19311886_19313537
transcript_49732.nnic	chr7	-	983	3	NNC	ENSMUSG00000044709.7	novel	652	2	NA	NA	-56	182	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	17	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTGGCTTTCCTTT	3263	False	NA	NA	False	AAGAAA	-17	NA	19306949	19298688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_19298802_19298849_19299602_19306831
transcript_49733.nnic	chr7	-	977	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	-35	182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	112.5	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTGGCTTTCCTTT	2867	False	NA	NA	False	AAGAAA	-17	NA	19307345	19298688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_19298802_19298849_19299602_19307233
transcript_49734.nnic	chr7	-	990	3	NNC	ENSMUSG00000044709.7	novel	1023	3	NA	NA	-69	182	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	27	43	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGCTCTGGCTTTCCTTT	2395	False	NA	NA	False	AAGAAA	-17	NA	19307817	19298688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_19298802_19298849_19299602_19307692
transcript_49736.known	chr7	-	763	2	FSM	ENSMUSG00000044709.7	ENSMUST00000051364.4	763	2	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_1	0	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGCTGCTGTGTGTGTGT	2944	False	NA	-9	True	AATAAA	-19	NA	19307268	19298873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19299602_19307233
transcript_49737.known	chr7	-	652	2	FSM	ENSMUSG00000044709.7	ENSMUST00000122127.2	652	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAGATCATAAACTCAAGG	3319	False	NA	NA	False	NA	NA	NA	19306893	19299011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19299602_19306831
transcript_49740.nic	chr7	-	2375	12	NIC	ENSMUSG00000002983.18	novel	2209	12	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_10	91.1853982801201	36	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTTGGGGGTCTTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	19362420	19340147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19356850_19356860_19361847_19361896_19362000
transcript_49742.nnic	chr7	-	2346	12	NNC	ENSMUSG00000002983.18	novel	2209	12	NA	NA	-17	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_10	99.1878591610822	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTTGGGGGTCTTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	19362376	19340147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19356850_19356860_19361847_19361911_19362000
transcript_49743.nic	chr7	-	2349	11	NIC	ENSMUSG00000002983.18	novel	2200	11	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_10	54.7927002437368	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTTTGGGGGTCTTCTTT	NA	False	NA	-7	True	AATAAA	-14	NA	19362403	19340147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_19340867_19345547_19345626_19345741_19345811_19346429_19346646_19347705_19347811_19349483_19349616_19350270_19350363_19351686_19351845_19353438_19353768_19361847_19361896_19362000
transcript_49749.known	chr7	-	4143	14	FSM	ENSMUSG00000002981.11	ENSMUST00000055242.11	4143	14	0	0	0	0	multi-exon	FALSE	canonical	3	1363	junction_5	136.704319631521	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTGTCCCCAACTTTGAGA	5148	False	NA	NA	False	AAAACA	-17	NA	19398958	19365495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19367888_19367980_19368149_19368802_19368939_19369232_19369329_19369585_19369777_19371002_19371097_19371393_19371639_19372041_19372163_19372856_19372943_19376976_19377095_19379766_19379926_19380640_19380765_19389642_19389756_19398858
transcript_4975.nnic	chr10	+	1351	11	NNC	ENSMUSG00000035027.19	novel	662	7	NA	NA	322	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	211.816524379001	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCGGCTGTGCTCCTGCC	1852	False	NA	13	True	NA	NA	NA	80942500	80959717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_80942588_80944581_80944793_80950859_80951007_80953985_80954064_80954942_80954995_80955090_80955216_80955323_80955538_80956879_80956945_80957736_80957799_80958400_80958447_80959453
transcript_49754.known	chr7	-	358	2	FSM	ENSMUSG00000002981.11	ENSMUST00000208594.2	358	2	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATCATCTCACCCCAGCA	5165	False	NA	NA	False	NA	NA	NA	19398941	19389480	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19389756_19398858
transcript_49755.nnic	chr7	-	654	4	NNC	ENSMUSG00000002992.18	novel	569	4	NA	NA	81	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	2.49443825784929	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCGTCGTGTGGCTTCTT	7272	False	NA	NA	False	AATAAA	-15	NA	19407764	19405508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_19405774_19407153_19407305_19407471_19407587_19407641
transcript_49757.known	chr7	-	538	3	FSM	ENSMUSG00000074336.6	ENSMUST00000003071.10	538	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	3.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGCATAGCTTCTCTTGA	5934	False	NA	3	True	AATAAA	-27	NA	19415404	19412007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19412238_19412534_19412668_19415229
transcript_49758.known	chr7	-	765	5	FSM	ENSMUSG00000109350.2	ENSMUST00000127648.4	765	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.17944947177034	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCGTCGTGTGGCTTCTT	5990	False	NA	NA	False	AATAAA	-15	NA	19415348	19405508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19405774_19407153_19407305_19407471_19407539_19410646_19410810_19415229
transcript_4976.known	chr10	-	2571	11	FSM	ENSMUSG00000004934.15	ENSMUST00000005064.14	2571	11	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_2	40.6104666311531	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGTGGTTTCTCTGTAG	NA	False	NA	2	True	AATAAA	-37	NA	81003757	80989099	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_80990207_80990281_80990413_80991424_80991586_80991666_80991741_80992845_80992952_80993060_80993190_80993270_80993362_80993484_80993527_80993766_80993852_80999618_81000025_81003518
transcript_49761.known	chr7	-	432	4	FSM	ENSMUSG00000040564.15	ENSMUST00000045035.12	432	4	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_3	145.90027035235	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGAAGTGCTTTGG	NA	False	NA	-4	True	AATAAA	-19	NA	19426585	19423405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19423562_19425812_19425961_19426335_19426412_19426533
transcript_49765.known	chr7	-	339	2	FSM	ENSMUSG00000040564.15	ENSMUST00000207978.2	339	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAAGGCAAACGCTCCCTG	NA	False	NA	-15	True	AATAAA	-8	NA	19426529	19423416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19423562_19426335
transcript_49766.known	chr7	-	532	3	FSM	ENSMUSG00000040564.15	ENSMUST00000108451.4	532	3	0	0	0	0	multi-exon	FALSE	canonical	3	1274	junction_1	0.5	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTCCCTGAAGTGCTTTGG	NA	False	NA	-4	True	AATAAA	-19	NA	19426563	19423405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19423562_19425812_19425961_19426335
transcript_49767.known	chr7	-	817	5	FSM	ENSMUSG00000002985.17	ENSMUST00000172983.8	817	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	5193.26072906031	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCAGGCCCGTGACCGCCT	NA	False	NA	NA	False	NA	NA	NA	19432963	19430544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19431029_19431403_19431573_19432112_19432179_19432328_19432399_19432935
transcript_49771.known	chr7	-	1128	4	FSM	ENSMUSG00000002985.17	ENSMUST00000003066.16	1128	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4936.24555935199	1727	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGAGTCTCTGTGAGT	NA	False	NA	-30	True	AATAAA	-14	NA	19432977	19430196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19431029_19431403_19431573_19432112_19432198_19432935
transcript_49772.known	chr7	-	1221	3	FSM	ENSMUSG00000002985.17	ENSMUST00000173739.8	1221	3	0	0	0	0	multi-exon	FALSE	canonical	3	10421	junction_2	50	1314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGAGTCTCTGTGAGT	NA	False	NA	-30	True	AATAAA	-14	NA	19432332	19430196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19431029_19431403_19431573_19432112
transcript_49773.known	chr7	-	1577	10	FSM	ENSMUSG00000002984.18	ENSMUST00000093552.12	1577	10	0	0	0	0	multi-exon	TRUE	canonical	3	2342	junction_9	200.868177398407	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGAGGCCTCGGTTTTC	9881	False	NA	-13	True	NA	NA	NA	19449363	19435237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19435783_19436772_19436876_19436990_19437068_19437193_19437317_19444657_19444764_19444842_19444945_19447593_19447687_19448217_19448286_19448905_19449185_19449282
transcript_49774.known	chr7	-	2735	9	FSM	ENSMUSG00000062300.15	ENSMUST00000075447.14	2735	9	0	0	0	0	multi-exon	FALSE	canonical	3	309	junction_4	306.654528745297	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGTGAAGTGAGTGGGGT	NA	False	NA	-2	True	GATAAA	-18	NA	19483498	19450568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19451713_19453120_19453208_19453357_19453422_19455277_19455432_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
transcript_49775.known	chr7	-	1955	6	FSM	ENSMUSG00000062300.15	ENSMUST00000108450.5	1955	6	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_1	167.41517255016	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCGGGGTGTTTTGTAATC	NA	False	NA	-4	True	AATAAA	-16	NA	19483458	19458085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19458795_19463962_19464112_19464536_19464655_19466839_19467137_19471936_19472300_19483139
transcript_49779.known	chr7	-	2429	15	FSM	ENSMUSG00000002980.15	ENSMUST00000003061.14	2429	15	0	0	0	0	multi-exon	TRUE	canonical	3	510	junction_11	49.5145824737624	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTACCGCCAGGTTCTCTTCT	3912	False	NA	-5	True	AATAAA	-26	NA	19504472	19490055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19490545_19490632_19490751_19492348_19492494_19492583_19492729_19492884_19493022_19493971_19494114_19494218_19494338_19497964_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760_19500987_19502376_19502499_19504331
transcript_49780.known	chr7	-	1449	8	FSM	ENSMUSG00000002980.15	ENSMUST00000133271.2	1449	8	0	0	0	0	multi-exon	FALSE	canonical	3	510	junction_4	38.4102452319106	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACTTCGCTAGAAAGAAAGCT	3964	False	NA	NA	False	AAAAAG	-13	NA	19504420	19497597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19498122_19498577_19498715_19499258_19499442_19499537_19499635_19500613_19500685_19500760_19500987_19502376_19502499_19504331
transcript_49781.known	chr7	-	1662	12	FSM	ENSMUSG00000040525.14	ENSMUST00000043822.8	1662	12	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	3.71283233757493	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCCCGTGTGTGACAGAG	NA	False	NA	1	True	AATAAA	-20	NA	19530734	19513642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19513722_19514697_19514773_19514894_19515002_19518727_19518806_19519162_19519325_19520107_19520240_19522893_19522982_19524324_19524463_19526032_19526155_19526433_19526591_19526733_19526881_19530357
transcript_49782.nnic	chr7	-	330	4	NNC	ENSMUSG00000040525.14	novel	1514	11	NA	NA	3545	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	4.64279609239471	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCCCGTGTGTGACAGAG	NA	False	NA	1	True	AATAAA	-20	NA	19515820	19513642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_19513722_19514697_19514773_19514894_19515002_19515751
transcript_49783.known	chr7	-	1850	9	FSM	ENSMUSG00000053175.18	ENSMUST00000120537.8	1850	9	0	0	0	0	multi-exon	TRUE	canonical	3	615	junction_1	42.6314144733669	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTTGCTTTCCATCTGTT	5729	False	NA	-8	True	AATAAA	-17	NA	19556695	19542386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19542982_19543066_19543185_19543420_19543589_19544981_19545060_19545244_19545334_19545419_19545625_19546329_19546439_19553971_19554126_19556361
transcript_49784.known	chr7	+	402	2	FSM	ENSMUSG00000087593.2	ENSMUST00000137373.2	402	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGAAGGAATGACGTGGAC	NA	False	NA	NA	False	AATAAA	-28	NA	19550477	19552550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_19550699_19552369
transcript_49787.known	chr7	-	2905	8	FSM	ENSMUSG00000040511.15	ENSMUST00000043517.8	2905	8	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_4	10.2359909243845	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCATTGTCCGAGCCTTTG	9931	False	NA	-1	True	NA	NA	NA	19655085	19637502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19639118_19639703_19639739_19643105_19643229_19644529_19644682_19648662_19648790_19650798_19651096_19652486_19652835_19654877
transcript_49790.known	chr7	-	1794	2	FSM	ENSMUSG00000040511.15	ENSMUST00000159261.2	1794	2	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	9978	False	NA	NA	False	NA	NA	NA	19655038	19651201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_19652835_19654877
transcript_49791.nic	chr7	-	606	3	ISM	ENSMUSG00000040498.8	ENSMUST00000208210.2	832	4	2875	-93	2875	93	3prime_fragment	FALSE	canonical	3	9	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCGGCTGCCAACACCCC	4	True	NA	NA	False	AATAAA	-16	NA	19675948	19672013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_19672176_19673097_19673268_19675674
transcript_49795.known	chr7	-	645	1	FSM	ENSMUSG00000066724.4	ENSMUST00000086013.4	645	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4223	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAAAAATAAGGCTG	NA	False	NA	NA	False	AATAAA	-13	NA	23646715	23646070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_23646100_23646700
transcript_49796.known	chr7	+	3901	5	FSM	ENSMUSG00000057101.9	ENSMUST00000068975.6	3901	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_2	15.0499169432924	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCCACTTGTTTGATCTT	NA	False	NA	NA	False	AATAAA	-30	NA	23781348	23807138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_23781664_23784850_23784932_23797245_23797321_23800872_23800994_23803829
transcript_49797.nic	chr7	+	877	3	ISM	ENSMUSG00000047603.10	ENSMUST00000205680.2	1332	5	-22	3394	0	636	5prime_fragment	TRUE	canonical	3	44	junction_2	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGAGTGTGTGTGCATT	NA	False	NA	NA	False	AATAAA	-24	NA	23833598	23836975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_23833913_23834682_23834741_23836470
transcript_49798.known	chr7	+	1037	4	FSM	ENSMUSG00000068962.8	ENSMUST00000205309.2	1037	4	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_1	13.589211407093	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGAAGCCCTCCCACTGC	NA	False	NA	NA	False	NA	NA	NA	23874484	23880559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_23874575_23875533_23875592_23877174_23877302_23879797
transcript_49799.known	chr7	-	6402	4	FSM	ENSMUSG00000087598.10	ENSMUST00000086006.12	6402	4	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_1	10.4986771653491	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACTTTGCTTCGGTAGCT	NA	False	NA	NA	False	NA	NA	NA	23907574	23893371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_23899468_23902794_23902922_23906482_23906541_23907453
transcript_4980.known	chr10	+	3089	14	FSM	ENSMUSG00000034994.11	ENSMUST00000047864.11	3089	14	0	0	0	0	multi-exon	TRUE	canonical	3	5618	junction_10	706.418033369635	6566	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGCTCGCAACTCTGTTTT	2181	False	NA	32	True	AATAAA	-20	NA	81012464	81018332	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_81012564_81013498_81013714_81013886_81014069_81014514_81014727_81014914_81015094_81015179_81015286_81015377_81015631_81015715_81015912_81015986_81016246_81016398_81016507_81016637_81016992_81017061_81017245_81017326_81017460_81017722
transcript_49804.nnic	chr7	-	1190	3	NNC	ENSMUSG00000074283.6	novel	2932	4	NA	NA	-141	-5631	at_least_one_novel_splicesite	TRUE	canonical	3	18	junction_2	1	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGTGAGTGTGAGTGGAG	NA	False	NA	NA	False	ATTAAA	-15	NA	23937126	23933103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_23933903_23936042_23936101_23936793
transcript_49805.known	chr7	+	3508	4	FSM	ENSMUSG00000055305.16	ENSMUST00000108438.10	3508	4	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_2	2.44948974278318	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTCGTTTTCTCATAATAAG	NA	False	NA	NA	False	NA	NA	NA	23969844	23977219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_23970107_23971037_23971096_23972672_23972800_23974158
transcript_49806.known	chr7	-	2480	7	FSM	ENSMUSG00000050605.18	ENSMUST00000077780.14	2480	7	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	4.81028989655394	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTGGATTCTTTGTGTG	NA	False	NA	7	True	TATAAA	-23	NA	23999100	23990463	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_23991930_23992769_23992860_23994379_23994507_23995403_23995450_23996997_23997164_23997698_23997801_23998617
transcript_49807.nnic	chr7	-	2189	6	NIC	ENSMUSG00000050605.18	novel	2480	7	NA	NA	87	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_4	15.3310143173894	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATGTGGATTCTTTGTGTG	NA	False	NA	7	True	TATAAA	-23	NA	23998975	23990463	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_23991930_23992769_23992860_23994379_23994507_23995403_23995450_23997698_23997801_23998617
transcript_49809.known	chr7	-	2599	6	FSM	ENSMUSG00000074282.11	ENSMUST00000108436.8	2599	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	3.8262252939418	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAAAGACAGTCACTTGA	NA	False	NA	NA	False	AGTAAA	-16	NA	24016030	24001128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_24003299_24008495_24008623_24010889_24010929_24011806_24011921_24013774_24013837_24015943
transcript_4981.known	chr10	+	1841	13	FSM	ENSMUSG00000004933.18	ENSMUST00000121205.8	1841	13	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	3.15788255358274	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAACTGTCTGATGCCTGTG	NA	False	NA	NA	False	CATAAA	-22	NA	81093138	81098815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_81093409_81094313_81094374_81095007_81095122_81095216_81095333_81095420_81095641_81095922_81096017_81096741_81096808_81097276_81097377_81097464_81097550_81097628_81097703_81097794_81097991_81098281_81098369_81098456
transcript_49812.known	chr7	-	2529	5	FSM	ENSMUSG00000074282.11	ENSMUST00000032673.15	2529	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0.866025403784439	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATGTTTGAATTGTATATC	NA	False	NA	NA	False	NA	NA	NA	24016091	24001220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_24003299_24008495_24008623_24011806_24011921_24013774_24013837_24015943
transcript_49814.known	chr7	-	902	4	FSM	ENSMUSG00000074282.11	ENSMUST00000137781.8	902	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0.942809041582063	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAGAAATCACTTTGCG	NA	False	NA	NA	False	NA	NA	NA	24016049	24008002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_24008623_24011806_24011921_24013774_24013837_24015943
transcript_49815.known	chr7	+	1945	9	FSM	ENSMUSG00000054342.9	ENSMUST00000205428.2	1945	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.08972473588517	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACAGCAGCTGCCATTT	NA	False	NA	NA	False	AATAAA	-9	NA	24069687	24084630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24070021_24074096_24074193_24076707_24077130_24078558_24078695_24081076_24081188_24081586_24081706_24081896_24081967_24083433_24083608_24084146
transcript_49816.known	chr7	+	2242	14	FSM	ENSMUSG00000002210.12	ENSMUST00000002280.11	2242	14	0	0	0	0	multi-exon	TRUE	canonical	3	128	junction_3	14.7828462881374	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGGTTTGTTCTTTCTC	NA	False	NA	19	True	AATAAA	-19	NA	24099043	24122203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24099317_24102816_24102973_24104951_24105027_24105112_24105378_24105459_24105558_24106945_24107059_24114363_24114476_24115923_24116020_24116345_24116432_24119438_24119546_24120000_24120109_24120237_24120367_24120544_24120690_24121724
transcript_49820.known	chr7	+	1620	6	FSM	ENSMUSG00000002210.12	ENSMUST00000146381.8	1620	6	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_3	16.7761735804086	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	24099043	24107698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24099317_24102816_24102973_24104951_24105027_24105112_24105378_24105459_24105558_24106945
transcript_49821.known	chr7	+	1506	7	FSM	ENSMUSG00000046223.11	ENSMUST00000002284.11	1506	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	5.84284938098603	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTGGCTAGGTCTCTTA	NA	False	NA	NA	False	NA	NA	NA	24161908	24175392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24161993_24164555_24164667_24166099_24166244_24171323_24171480_24171997_24172133_24173634_24173782_24174663
transcript_49823.nnic	chr7	+	1196	4	NNC	ENSMUSG00000064264.15	novel	1159	3	NA	NA	172	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	89.1777251709566	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCGAGCTGCGTGAGT	NA	False	NA	34	True	AATAAA	-28	NA	24206726	24215105	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_24206862_24208193_24208403_24209970_24210179_24214461
transcript_49824.nnic	chr7	+	1159	4	NNC	ENSMUSG00000064264.15	novel	1182	3	NA	NA	172	0	at_least_one_novel_splicesite	FALSE	canonical	3	74	junction_1	150.608395811418	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGAGCTGCGTGAGTGT	NA	False	NA	36	True	AATAAA	-30	NA	24206726	24215107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_24206862_24208193_24208403_24209970_24210179_24214500
transcript_49827.known	chr7	+	1159	3	FSM	ENSMUSG00000064264.15	ENSMUST00000177205.2	1159	3	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_2	107	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCGAGCTGCGTGAGT	NA	False	NA	34	True	AATAAA	-28	NA	24206554	24215105	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24206862_24209970_24210179_24214461
transcript_49828.known	chr7	+	1182	3	FSM	ENSMUSG00000064264.15	ENSMUST00000071361.13	1182	3	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_2	41.5	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGAGCTGCGTGAGTGT	NA	False	NA	36	True	AATAAA	-30	NA	24206494	24215107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24206862_24209970_24210179_24214500
transcript_49829.known	chr7	+	1045	3	FSM	ENSMUSG00000064264.15	ENSMUST00000176880.2	1045	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	119	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGACGAGGAGGAGGGGGG	NA	False	NA	NA	False	NA	NA	NA	24206430	24214844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24206862_24209947_24210179_24214461
transcript_49831.nic	chr7	+	809	3	NIC	ENSMUSG00000064264.15	novel	1159	3	NA	NA	211	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	137	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCGAGCTGCGTGAGT	NA	False	NA	34	True	AATAAA	-28	NA	24206765	24215105	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_24206862_24210109_24210179_24214461
transcript_49832.known	chr7	+	435	3	FSM	ENSMUSG00000064264.15	ENSMUST00000177228.2	435	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	202.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGGAAGAGGAGACCACTG	NA	False	NA	NA	False	AATACA	-38	NA	24206523	24214528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24206862_24210109_24210179_24214500
transcript_49833.nnic	chr7	+	1208	3	NNC	ENSMUSG00000064264.15	novel	1045	3	NA	NA	391	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	126	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTCGAGCTGCGTGAGT	NA	False	NA	34	True	AATAAA	-28	NA	24206945	24215105	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_24207302_24209970_24210179_24214461
transcript_49834.nnic	chr7	+	1171	3	NNC	ENSMUSG00000064264.15	novel	1045	3	NA	NA	391	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	191.5	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTCGAGCTGCGTGAGTGT	NA	False	NA	36	True	AATAAA	-30	NA	24206945	24215107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_24207302_24209970_24210179_24214500
transcript_49838.known	chr7	+	2155	17	FSM	ENSMUSG00000051768.10	ENSMUST00000063249.9	2155	17	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_4	31.1527862919194	197	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGTTTCTCTCTTAGGAG	NA	False	NA	7	True	AATAAA	-19	NA	24246574	24272863	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24246785_24247214_24247308_24259160_24259278_24264960_24265120_24265643_24265719_24265813_24265926_24266282_24266393_24266463_24266570_24266738_24266998_24267234_24267352_24269640_24269735_24269873_24270004_24270296_24270352_24270439_24270577_24271633_24271725_24272478_24272555_24272649
transcript_49842.known	chr7	+	1484	8	FSM	ENSMUSG00000064254.7	ENSMUST00000077191.7	1484	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	37.1247208468856	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGAGTTCTGCTTGCTTTC	6286	False	NA	9	True	AATAAA	-24	NA	24286967	24308350	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24287233_24293051_24293437_24293842_24293988_24294424_24294574_24305629_24305760_24307292_24307383_24307776_24307894_24308147
transcript_49844.known	chr7	-	1059	6	FSM	ENSMUSG00000062773.7	ENSMUST00000078001.7	1059	6	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	1.72046505340853	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGCGCGTGCATGCATG	1002	False	NA	NA	False	AATAAA	-21	NA	24371475	24367431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_24367828_24367933_24368066_24369138_24369325_24369757_24369899_24370003_24370109_24371376
transcript_49849.known	chr7	+	750	4	FSM	ENSMUSG00000054169.8	ENSMUST00000206850.2	750	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	11.8415464455544	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGGCTCCTTCGACTCTAT	1182	False	NA	NA	False	AATAAA	-26	NA	24476705	24484082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24476765_24477550_24477687_24480294_24480655_24483887
transcript_49850.known	chr7	+	1048	4	FSM	ENSMUSG00000054169.8	ENSMUST00000038069.9	1048	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	7.31816613336672	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGCTCCTTCGACTCTA	1107	False	NA	NA	False	AATAAA	-25	NA	24476630	24484081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24476765_24477550_24477911_24480294_24480655_24483887
transcript_49851.known	chr7	+	662	3	FSM	ENSMUSG00000054169.8	ENSMUST00000206847.2	662	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	14	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGGTTGGCTCCTTCGAC	1129	False	NA	NA	False	AATAAA	-21	NA	24476652	24484077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24476765_24480294_24480655_24483887
transcript_49852.nnic	chr7	+	746	3	Genic_Genomic	ENSMUSG00000091955.3	novel	485	1	NA	NA	-8308	0	multi-exon	FALSE	canonical	2	5	junction_2	2.5	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCATGATTAAACTCCTGG	5830	False	NA	NA	False	AATAAA	-34	NA	24553329	24562122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr7_+_24553498_24553668_24553741_24561616
transcript_49853.known	chr7	+	485	1	FSM	ENSMUSG00000091955.3	ENSMUST00000170837.3	485	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	666	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCATGATTAAACTCCTGG	NA	False	NA	NA	False	AATAAA	-34	NA	24561637	24562122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24561600_24562100
transcript_49856.known	chr7	+	1619	9	FSM	ENSMUSG00000011349.6	ENSMUST00000011493.6	1619	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.69771416230941	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCATCGAGAGTTGATTATC	NA	False	NA	4	True	NA	NA	NA	24569481	24577076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24569598_24571902_24572131_24572204_24572360_24573346_24573424_24573622_24573804_24574331_24574459_24575172_24575234_24575373_24575549_24576577
transcript_49859.known	chr7	+	593	7	FSM	ENSMUSG00000040952.17	ENSMUST00000129847.8	593	7	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_3	8759.20174096298	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584057	24589231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24585531_24585613_24587706_24587891_24588331_24588387_24589165
transcript_4986.known	chr10	-	604	3	FSM	ENSMUSG00000034932.5	ENSMUST00000046114.5	604	3	0	0	0	0	multi-exon	FALSE	canonical	3	958	junction_1	11.5	444	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGTGTCATGCCCTGTG	3094	False	NA	0	True	AATAAA	-29	NA	81102768	81100546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81100832_81101484_81101642_81102606
transcript_4987.nic	chr10	-	3040	21	NIC	ENSMUSG00000034917.9	novel	3024	21	NA	NA	-55	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_20	33.8096140173176	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAATACAAGACTGAGG	7785	False	NA	8	True	AATAAA	-27	NA	81121670	81109040	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_81109224_81109482_81109530_81109636_81109904_81110216_81110318_81110413_81110625_81111007_81111079_81112101_81112198_81113029_81113245_81113652_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938_81117267_81118771_81118875_81119329_81119440_81119516_81119574_81121434
transcript_49870.known	chr7	+	774	6	FSM	ENSMUSG00000040952.17	ENSMUST00000108430.10	774	6	0	0	0	0	multi-exon	FALSE	canonical	3	8873	junction_5	7497.54368843557	14706	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24583795	24589231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
transcript_49878.known	chr7	+	633	6	FSM	ENSMUSG00000040952.17	ENSMUST00000108429.8	633	6	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	10447.7852504729	436	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGGTCTGGATCTGGTTT	NA	False	NA	26	True	AATAAA	-16	NA	24584138	24589231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24584295_24584560_24584632_24584876_24584978_24587706_24587891_24588331_24588387_24589165
transcript_4988.nic	chr10	+	2006	11	NIC	ENSMUSG00000004931.12	novel	2268	12	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	59.7863696840676	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTGGTCAGAAGCTTGA	1331	False	NA	18	True	TATAAA	-21	NA	81104016	81109070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_81104154_81104691_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
transcript_49880.known	chr7	+	1284	5	FSM	ENSMUSG00000040952.17	ENSMUST00000108428.8	1284	5	0	0	0	0	multi-exon	FALSE	canonical	3	12982	junction_1	6509.68167424491	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAATCCTGGTCTGGATCTG	NA	False	NA	22	True	AATAAA	-12	NA	24584060	24589227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24584093_24584560_24584632_24584876_24584978_24587706_24587891_24588331
transcript_49887.known	chr7	+	1457	5	FSM	ENSMUSG00000003379.8	ENSMUST00000003469.8	1457	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.4790199457749	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATATTATTTTCTGGAGT	2898	False	NA	NA	False	TTTAAA	-13	NA	24596805	24601622	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24597014_24598519_24598814_24599011_24599131_24600657_24600727_24600855
transcript_49888.nic	chr7	+	735	3	ISM	ENSMUSG00000003379.8	ENSMUST00000003469.8	1457	5	2087	339	2087	-339	3prime_fragment	FALSE	canonical	1	1	junction_1	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTTGGCAGGAGTCATGG	4985	False	NA	NA	False	AATAAA	-15	NA	24598892	24601283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_24599131_24600657_24600727_24600855
transcript_4989.known	chr10	+	2106	11	FSM	ENSMUSG00000004931.12	ENSMUST00000057798.9	2106	11	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_1	25.7441255435099	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCTTGAGGGCTTGTGG	1320	False	NA	28	True	TATAAA	-31	NA	81104005	81109080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_81104154_81104612_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107198_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
transcript_49890.known	chr7	+	3214	29	FSM	ENSMUSG00000040940.19	ENSMUST00000117419.8	3214	29	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	33.6220742600902	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTGTGTGTGTGAGGGCG	9924	False	NA	34	True	AATATA	-16	NA	24603831	24626017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24603923_24607140_24607183_24607278_24607360_24607735_24607850_24611481_24611581_24611734_24611778_24611979_24612227_24612564_24612595_24612823_24612924_24613044_24613142_24615442_24615479_24616225_24616367_24617319_24617426_24619055_24619202_24621295_24621443_24621749_24621833_24621965_24622092_24622231_24622347_24622434_24622536_24622788_24622867_24623083_24623160_24623227_24623396_24624220_24624309_24624400_24624488_24624676_24624745_24624825_24624913_24625208_24625373_24625448_24625549_24625664
transcript_49893.known	chr7	-	899	5	FSM	ENSMUSG00000003380.12	ENSMUST00000076961.9	899	5	0	0	0	0	multi-exon	FALSE	canonical	3	706	junction_2	24.5051015096857	438	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACTTTCCTGGTATTTTC	4495	False	NA	-5	True	AATAAA	-24	NA	24672179	24669176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_24669435_24669511_24669614_24671185_24671284_24671526_24671740_24671951
transcript_49897.known	chr7	-	986	4	FSM	ENSMUSG00000003380.12	ENSMUST00000205871.2	986	4	0	0	0	0	multi-exon	FALSE	canonical	3	706	junction_2	27.3292679903595	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGGCCAATACTTTCCT	-3	True	NA	-14	True	AATAAA	-15	NA	24672063	24669185	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_24669435_24669511_24669614_24671185_24671284_24671526
transcript_49898.known	chr7	-	3621	23	FSM	ENSMUSG00000040907.16	ENSMUST00000080882.11	3621	23	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_18	15.2038490124504	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTGTGTGTGTTATGCTT	NA	False	NA	-1	True	AATATA	-18	NA	24705383	24677591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686859_24687029_24687402_24687554_24688992_24689130_24689213_24689390_24689787_24689981_24693556_24693692_24693774_24693885_24693960_24694160_24696556_24696826_24696937_24697056_24698098_24698234_24698324_24698439_24700001_24700206_24700344_24700405_24700496_24700584_24705179
transcript_49899.nnic	chr7	-	1288	8	NNC	ENSMUSG00000040907.16	novel	3621	23	NA	NA	18659	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_7	17.1499985125245	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTGTGTGTGTTATGCTT	NA	False	NA	-1	True	AATATA	-18	NA	24686661	24677591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_24678002_24678338_24678431_24678719_24678822_24679434_24679566_24679975_24680122_24680943_24681068_24681166_24681322_24686533
transcript_4990.nic	chr10	+	2054	11	NIC	ENSMUSG00000004931.12	novel	2268	12	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_5	64.5607465880004	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAGTGGTCAGAAGCTTGA	1335	False	NA	18	True	TATAAA	-21	NA	81104020	81109070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_81104154_81104612_81105296_81105378_81105419_81106801_81106948_81107029_81107117_81107225_81107361_81107495_81107667_81108018_81108232_81108417_81108538_81108655_81108794_81108882
transcript_49900.known	chr7	+	4140	2	FSM	ENSMUSG00000045252.12	ENSMUST00000179556.2	4140	2	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTCAATGAGGGTGTGTATT	4955	False	NA	NA	False	AAGAAA	-10	NA	24776629	24782917	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24776812_24778959
transcript_49901.known	chr7	+	1003	3	FSM	ENSMUSG00000074274.8	ENSMUST00000098678.8	1003	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTTGTGTGTGTTTGCTT	NA	False	NA	NA	False	AATAAA	-16	NA	24851881	24856052	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_24852052_24854746_24855046_24855518
transcript_49902.nnic	chr7	-	1706	5	NIC	ENSMUSG00000054499.10	novel	1828	5	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_4	38.1903129078566	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCCAGGCTCTCCGGTACT	NA	False	NA	-8	True	AATAAA	-27	NA	24919298	24902264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_24903357_24910573_24910724_24916969_24917093_24918225_24918457_24919188
transcript_49903.known	chr7	-	4594	5	FSM	ENSMUSG00000054499.10	ENSMUST00000206750.2	4594	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	29.7237278954037	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATATCTTGTGTCATGTCT	NA	False	NA	-4	True	NA	NA	NA	24919284	24899339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_24903357_24910573_24910724_24916969_24917093_24918225_24918457_24919211
transcript_49905.known	chr7	-	901	6	FSM	ENSMUSG00000005447.13	ENSMUST00000005583.12	901	6	0	0	0	0	multi-exon	TRUE	canonical	3	245	junction_5	66.0714764478591	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTTCTGCTTTATG	8499	False	NA	-2	True	ATTAAA	-15	NA	24997411	24994473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796_24996896_24997267
transcript_49906.known	chr7	-	859	5	FSM	ENSMUSG00000005447.13	ENSMUST00000148150.8	859	5	0	0	0	0	multi-exon	FALSE	canonical	3	385	junction_2	17.4570902500961	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGCACCCCAACCCACTTCG	8603	False	NA	NA	False	NA	NA	NA	24997307	24994783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_24994802_24995545_24995669_24995745_24995863_24996510_24996601_24996796
transcript_49910.known	chr7	+	1240	3	FSM	ENSMUSG00000058741.5	ENSMUST00000080288.5	1240	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTTGATTTTCAGTGAGT	2125	False	NA	NA	False	AATAAA	-14	NA	25000835	25003557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_25000900_25002297_25002923_25003006
transcript_49911.known	chr7	-	3613	10	FSM	ENSMUSG00000003123.16	ENSMUST00000003207.11	3613	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_6	4.8099690715363	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTCTGCCTGCCTGTGAT	NA	False	NA	NA	False	NA	NA	NA	25095804	25078951	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_25079599_25079950_25080382_25082575_25082753_25082877_25083106_25083797_25084090_25084204_25084391_25084604_25084751_25084861_25084953_25087542_25088079_25094925
transcript_49913.nic	chr7	+	1544	7	NIC	ENSMUSG00000057229.12	novel	1465	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_3	52.8154543881071	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGGCCTTTCCTCCCA	1749	False	NA	39	True	NA	NA	NA	25318848	25324976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_25318886_25320320_25320518_25320848_25320938_25321768_25321850_25323223_25323364_25323451_25323615_25324139
transcript_49917.nnic	chr7	+	1307	6	NNC	ENSMUSG00000057229.12	novel	1465	6	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	46.5377266311968	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGGCCTTTCCTCCCA	1758	False	NA	39	True	NA	NA	NA	25318857	25324976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_25318886_25320320_25320379_25321768_25321850_25323223_25323364_25323451_25323615_25324139
transcript_49920.known	chr7	+	1465	6	FSM	ENSMUSG00000057229.12	ENSMUST00000077338.12	1465	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	20.2938414303453	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGTGGCCTTTCCTCCCA	1739	False	NA	39	True	NA	NA	NA	25318838	25324976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_25318886_25320320_25320518_25321768_25321850_25323223_25323364_25323451_25323615_25324139
transcript_49923.known	chr7	+	1116	1	FSM	ENSMUSG00000057229.12	ENSMUST00000205593.2	1116	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAATAAGGACTTGG	1749	False	NA	NA	False	AATGAA	-20	NA	25318848	25319964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_25318800_25320000
transcript_49925.known	chr7	-	1899	9	FSM	ENSMUSG00000060376.8	ENSMUST00000071329.8	1899	9	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_4	24.6373699895098	150	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGCTTCCTTCGTCTCTG	9682	False	NA	-9	True	AGTAAA	-19	NA	25358406	25329370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_25329859_25330424_25330597_25330766_25330909_25331062_25331270_25332664_25332827_25337586_25337696_25340881_25340969_25341068_25341252_25358057
transcript_49928.known	chr7	+	1844	1	FSM	ENSMUSG00000059479.8	ENSMUST00000206824.2	1844	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCCAAGGCCAGGAGCGAT	9967	False	NA	5	True	NA	NA	NA	25327066	25328910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_25327100_25328900
transcript_49934.known	chr7	+	1020	6	FSM	ENSMUSG00000061286.8	ENSMUST00000079634.8	1020	6	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_2	58.9528625259198	1088	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGGTGTCTGGAGAGTAC	NA	False	NA	31	True	ATTAAA	-43	NA	25358588	25367457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_25358809_25362561_25362676_25363751_25363874_25364845_25364987_25365677_25365768_25367124
transcript_49936.known	chr7	+	682	5	FSM	ENSMUSG00000061286.8	ENSMUST00000205966.2	682	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	557.079606070802	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTCCACCACCAAGGGGCT	NA	False	NA	NA	False	NA	NA	NA	25358636	25365731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_25358809_25362561_25362676_25363672_25363874_25364845_25364987_25365677
transcript_49942.known	chr7	+	995	4	FSM	ENSMUSG00000063439.8	ENSMUST00000205658.2	995	4	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	1.69967317119759	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGGTGCCTCCTTGTATC	NA	False	NA	8	True	AATAAA	-19	NA	25380204	25385983	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_25380404_25380807_25380900_25382715_25382842_25385405
transcript_49944.nic	chr7	-	3135	6	NIC	ENSMUSG00000002608.9	novel	3032	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_4	47.4189835403502	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTCATCTGTTATGTAA	NA	False	NA	-3	True	ATTAAA	-24	NA	25418470	25410530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_25412539_25413777_25413908_25414175_25414446_25415159_25415613_25416278_25416425_25418342
transcript_49946.known	chr7	-	3032	5	FSM	ENSMUSG00000002608.9	ENSMUST00000002683.3	3032	5	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	5.52268050859363	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATTCATCTGTTATGTAA	NA	False	NA	-3	True	ATTAAA	-24	NA	25418513	25410530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_25412539_25413777_25413908_25414175_25414446_25415159_25415613_25418342
transcript_49949.nic	chr7	-	1079	4	NIC	ENSMUSG00000002608.9	novel	1158	4	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_2	45.4923681023043	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACGCAGTGTTGACGAA	NA	False	NA	NA	False	NA	NA	NA	25418525	25413558	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_25413908_25414175_25414270_25415159_25415613_25418342
transcript_49950.known	chr7	-	1158	4	FSM	ENSMUSG00000002608.9	ENSMUST00000154143.8	1158	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_2	5.43650214343336	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAACGCAGTGTTGACGAA	NA	False	NA	NA	False	NA	NA	NA	25418428	25413558	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_25413908_25414175_25414446_25415159_25415613_25418342
transcript_49952.known	chr7	-	3354	15	FSM	ENSMUSG00000040725.14	ENSMUST00000043765.14	3354	15	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_14	237.54999473795	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCAGGAGTCGTGGTAGTT	9549	False	NA	NA	False	NA	NA	NA	25454175	25420906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_25421789_25422230_25422423_25423979_25424270_25425348_25425640_25426159_25426329_25432440_25432570_25432668_25432792_25433983_25434251_25440252_25440366_25442351_25442452_25444517_25444658_25445772_25445847_25447747_25447902_25450289_25450416_25453871
transcript_49955.known	chr7	-	3784	15	FSM	ENSMUSG00000040725.14	ENSMUST00000206832.2	3784	15	0	0	0	0	multi-exon	FALSE	canonical	3	866	junction_14	88.3957070247654	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGCAGGGTTGAAACCCT	9542	False	NA	-28	True	AATAAA	-25	NA	25454182	25420589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_25421789_25422230_25422423_25423979_25424270_25425348_25425640_25426159_25426329_25432440_25432570_25432668_25432792_25433983_25434251_25440252_25440366_25442351_25442452_25444517_25444658_25445772_25445847_25447747_25447902_25450289_25450416_25453765
transcript_49956.known	chr7	-	2745	9	FSM	ENSMUSG00000040703.12	ENSMUST00000043314.10	2745	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_7	4.7368238303741	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGGACCCCCTCTGCCTGT	1604	False	NA	-6	True	AATAAA	-18	NA	25516078	25501899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_25503185_25503340_25503483_25505295_25505484_25507468_25507611_25508603_25508784_25508862_25509024_25511026_25511177_25514309_25514476_25515747
transcript_49957.nnic	chr7	-	2601	14	NNC	ENSMUSG00000040650.9	novel	2189	9	NA	NA	-24788	-323	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_11	23.3121346363171	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGTGTCTTGTGCCTT	NA	False	NA	1	True	NA	NA	NA	26410650	26364974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_26365540_26372149_26372292_26372461_26372650_26373780_26373923_26374420_26374598_26378817_26378979_26380739_26380890_26381021_26381185_26385684_26385816_26389739_26389834_26390877_26390954_26392289_26392411_26392894_26393053_26410317
transcript_49964.nnic	chr7	-	2349	12	NNC	ENSMUSG00000040650.9	novel	2189	9	NA	NA	-24788	-323	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_10	23.333372687885	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGTGTCTTGTGCCTT	NA	False	NA	1	True	NA	NA	NA	26410650	26364974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_26365540_26372149_26372292_26372461_26372650_26373780_26373923_26374420_26374598_26378817_26378979_26380739_26380890_26381021_26381185_26389739_26389834_26390877_26390954_26392894_26393053_26410317
transcript_49967.nnic	chr7	-	2221	11	NNC	ENSMUSG00000040650.9	novel	2189	9	NA	NA	-24763	-323	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_9	20.9334660293034	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGTGTCTTGTGCCTT	NA	False	NA	1	True	NA	NA	NA	26410625	26364974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_26365540_26372149_26372292_26372461_26372650_26373780_26373923_26374420_26374598_26378817_26378979_26380739_26380890_26381021_26381185_26385684_26385816_26389739_26389834_26410317
transcript_4997.known	chr10	-	3024	21	FSM	ENSMUSG00000034917.9	ENSMUST00000045744.7	3024	21	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_20	26.4920271025077	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATAATACAAGACTGAGG	7297	False	NA	8	True	AATAAA	-27	NA	81127101	81109040	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81109224_81109482_81109530_81109636_81109904_81110216_81110318_81110413_81110625_81111007_81111079_81112101_81112198_81113029_81113245_81113652_81113900_81114457_81114567_81115028_81115186_81115338_81115406_81115727_81115790_81115916_81116026_81116239_81116400_81116599_81116704_81116938_81117267_81118771_81118875_81119329_81119440_81119516_81119574_81126881
transcript_49970.nnic	chr7	-	2090	10	NNC	ENSMUSG00000040650.9	novel	2189	9	NA	NA	-24763	-323	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_9	17.7332776384533	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTGGTGTCTTGTGCCTT	NA	False	NA	1	True	NA	NA	NA	26410625	26364974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_26365540_26372149_26372292_26372461_26372650_26373780_26373923_26374420_26374598_26378817_26378979_26380739_26380890_26381021_26381185_26389739_26389834_26410317
transcript_49973.known	chr7	+	1631	9	FSM	ENSMUSG00000078787.10	ENSMUST00000108385.3	1631	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	2.78107443266087	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTAAACTTTTATTTCTTGG	NA	False	NA	NA	False	AATACA	-18	NA	26854506	26858093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_26854729_26855057_26855221_26855581_26855732_26855940_26856102_26856642_26856820_26856895_26857038_26857138_26857327_26857576_26857719_26857807
transcript_49976.known	chr7	-	1756	6	FSM	ENSMUSG00000058709.12	ENSMUST00000108382.2	1756	6	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_5	218.816452763498	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGGTTTTGACCTGGG	NA	False	NA	NA	False	NA	NA	NA	26865838	26858412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26865740
transcript_49977.known	chr7	-	2107	6	FSM	ENSMUSG00000058709.12	ENSMUST00000080058.11	2107	6	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_5	57.8840219749803	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTTGTATTCCTCTCTG	NA	False	NA	-3	True	AATAAA	-20	NA	26866227	26858082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864044_26865154_26866108
transcript_49979.nnic	chr7	-	1721	6	NNC	ENSMUSG00000058709.12	novel	2107	6	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	232.127206505399	40	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTTGTATTCCTCTCTG	NA	False	NA	-3	True	AATAAA	-20	NA	26866204	26858082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864407_26865154_26866108
transcript_4998.known	chr10	+	2715	9	FSM	ENSMUSG00000034889.9	ENSMUST00000050867.8	2715	9	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	15.2786615905975	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTGATCTGAGTCA	5469	False	NA	16	True	AATAGA	-15	NA	81156936	81162076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_81157281_81158271_81158840_81158954_81159101_81159452_81159616_81159743_81159859_81160136_81160330_81160702_81160823_81160923_81161211_81161297
transcript_49981.nnic	chr7	-	1261	6	NNC	ENSMUSG00000058709.12	novel	2107	6	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_4	214.357085257287	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACACTTGTATTCCTCTCTG	NA	False	NA	-3	True	AATAAA	-20	NA	26866204	26858082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_26858637_26858948_26859017_26859211_26859349_26859712_26859833_26864867_26865154_26866108
transcript_4999.known	chr10	+	1765	3	FSM	ENSMUSG00000034881.9	ENSMUST00000105325.4	1765	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTCTGGAGCACTCCCCTA	3846	False	NA	NA	False	AATAAA	-15	NA	81164564	81171006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_81164752_81168225_81169090_81170292
transcript_49991.known	chr7	-	1192	8	FSM	ENSMUSG00000053291.16	ENSMUST00000093040.13	1192	8	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_1	28.7402157263998	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGGCCTCTGTCATTCTG	NA	False	NA	-1	True	CATAAA	-19	NA	26878321	26867848	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875319_26875582_26875664_26878151
transcript_49993.nnic	chr7	-	1111	7	NIC	ENSMUSG00000053291.16	novel	1192	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_6	262.193312907353	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCGGCCTCTGTCATTCTG	NA	False	NA	-1	True	CATAAA	-19	NA	26878321	26867848	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875319_26878151
transcript_49995.known	chr7	-	1372	7	FSM	ENSMUSG00000053291.16	ENSMUST00000134462.8	1372	7	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_1	25.5451669705946	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTCGGCCTCTGTCATT	NA	False	NA	-4	True	CATAAA	-16	NA	26878240	26867851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_26868230_26872061_26872193_26872288_26872385_26873846_26874002_26874140_26874204_26875203_26875664_26878151
transcript_49999.known	chr7	-	572	4	FSM	ENSMUSG00000089661.10	ENSMUST00000121848.2	572	4	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_1	9.2736184954957	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTTGTCTCTTTGGTTTT	NA	False	NA	-2	True	AATACA	-16	NA	26880582	26879168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_26879260_26879593_26879705_26880124_26880259_26880346
transcript_5.known	ERCC-00013	+	792	1	FSM	ERCC-00013A	EF011062	792	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00013_+_0_800
transcript_50.known	ERCC-00148	+	478	1	FSM	ERCC-00148A	DQ883642	478	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00148_+_0_500
transcript_50004.known	chr7	+	1748	7	FSM	ENSMUSG00000078786.10	ENSMUST00000179391.8	1748	7	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	4.48763733927875	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGGAGACTTGGTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	26895205	26903745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_26895533_26896330_26896792_26899978_26900048_26900444_26900570_26901832_26901963_26902051_26902123_26903180
transcript_50007.known	chr7	-	1336	7	FSM	ENSMUSG00000061479.16	ENSMUST00000122202.8	1336	7	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_6	627.600567417065	2068	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCAGTGTTGTCTGCTTTAT	NA	False	NA	-8	True	ATTAAA	-26	NA	26895670	26886431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_26886790_26888290_26888380_26888783_26888958_26891028_26891206_26892294_26892468_26894868_26894982_26895418
transcript_5001.known	chr10	-	1540	10	FSM	ENSMUSG00000020232.18	ENSMUST00000105324.9	1540	10	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_9	161.527966465926	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	False	NA	-11	True	AATAAA	-17	NA	81186260	81181884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967_81186024_81186106
transcript_50012.known	chr7	-	1690	1	FSM	ENSMUSG00000061479.16	ENSMUST00000206439.2	1690	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	26895578	26893888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_26893900_26895600
transcript_50013.known	chr7	+	2181	15	FSM	ENSMUSG00000003762.14	ENSMUST00000003860.13	2181	15	0	0	0	0	multi-exon	TRUE	canonical	3	74	junction_1	14.7544528041883	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTTTCTCTCTGTGCTA	NA	False	NA	22	True	AATAAA	-22	NA	26932447	26957375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_26932599_26932889_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949711_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
transcript_50014.nnic	chr7	+	2122	15	NNC	ENSMUSG00000003762.14	novel	2276	14	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	26.4262547247148	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCAGTTCTTTTCTCTCTG	NA	False	NA	17	True	AATAAA	-17	NA	26932610	26957370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_26932708_26932889_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949711_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
transcript_50018.nic	chr7	+	2213	6	ISM	ENSMUSG00000063160.13	ENSMUST00000134215.2	3153	9	5359	-160	5359	0	3prime_fragment	FALSE	canonical	3	79	junction_2	9.04212364436585	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCACTGGGAAATCAAGGTG	NA	False	NA	9	True	AATAAA	-18	NA	26966161	26981566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_26966227_26968203_26968345_26973379_26973570_26976051_26976358_26978928_26979052_26980178
transcript_50019.known	chr7	+	2276	14	FSM	ENSMUSG00000003762.14	ENSMUST00000108378.10	2276	14	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_6	13.8260537867321	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCAGTTCTTTTCTCTCT	NA	False	NA	16	True	AATAAA	-16	NA	26932637	26957369	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_26932998_26933126_26933247_26933365_26933433_26936802_26936881_26939221_26939345_26939464_26939551_26941403_26941545_26941636_26941719_26942727_26942822_26949711_26949854_26949960_26950069_26951685_26951752_26956036_26956124_26956647
transcript_5002.known	chr10	-	1463	10	FSM	ENSMUSG00000020232.18	ENSMUST00000105323.8	1463	10	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_9	133.860992944542	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTAATATTTGTGGCTTT	NA	False	NA	-8	True	AATAAA	-20	NA	81186314	81181881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967_81186024_81186240
transcript_50022.nnic	chr7	-	2099	9	NNC	ENSMUSG00000040488.19	novel	5118	30	NA	NA	-596	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_8	184.947289788199	56	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCGGCCTCTGCCTGCCTT	NA	False	NA	-6	True	ATTAAA	-16	NA	27010699	27004564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_27004976_27005491_27005645_27005986_27006368_27007192_27007346_27008345_27008493_27008710_27008840_27009605_27009678_27009945_27010213_27010313
transcript_50023.known	chr7	-	2358	18	FSM	ENSMUSG00000089832.9	ENSMUST00000003857.7	2358	18	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_5	29.8825845289775	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTATAGTCTTGGTTTG	NA	False	NA	-28	True	AATAAA	-17	NA	27055444	27041557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27054872_27054997_27055052_27055295
transcript_50025.known	chr7	-	2412	17	FSM	ENSMUSG00000089832.9	ENSMUST00000123190.8	2412	17	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	84.1649932795696	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACTGTTTATAGTCTTGG	NA	False	NA	-32	True	AATAAA	-13	NA	27055379	27041561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_27041970_27042070_27042183_27042667_27042847_27044064_27044162_27044597_27044754_27046426_27046598_27047756_27047874_27047958_27048047_27049916_27050033_27051120_27051312_27051404_27051496_27052019_27052182_27053796_27053878_27054150_27054210_27054638_27054713_27054825_27055052_27055295
transcript_50028.known	chr7	-	1140	6	FSM	ENSMUSG00000089832.9	ENSMUST00000148933.8	1140	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_5	134.483604948707	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACACTGTTTATAGTCTTG	NA	False	NA	-33	True	AATAAA	-12	NA	27045027	27041562	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27044841
transcript_50029.nnic	chr7	-	1043	6	NNC	ENSMUSG00000089832.9	novel	2358	18	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_5	134.878612092503	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTTTATAGTCTTGGTTTG	NA	False	NA	-28	True	AATAAA	-17	NA	27045069	27041557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_27041970_27042070_27042186_27042667_27042847_27044064_27044162_27044597_27044754_27044985
transcript_50030.nnic	chr7	-	1399	4	NNC	ENSMUSG00000092367.2	novel	556	7	NA	NA	-4002	-3734	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	12.4988888395018	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGCTGGTTTGTTCGTGTA	NA	False	NA	0	True	AATAAA	-20	NA	27060846	27055807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_27056876_27059167_27059211_27059359_27059534_27060732
transcript_50031.nic	chr7	-	1300	3	ISM	ENSMUSG00000011751.17	ENSMUST00000108362.8	4861	18	34383	0	34383	0	3prime_fragment	FALSE	canonical	3	37	junction_2	0.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGCTGGTTTGTTCGTGTA	NA	False	NA	0	True	AATAAA	-20	NA	27059548	27055807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_27056876_27059167_27059211_27059359
transcript_50032.nic	chr7	-	2682	2	ISM	ENSMUSG00000011751.17	ENSMUST00000108362.8	4861	18	33150	0	33150	0	intron_retention	FALSE	canonical	3	38	junction_1	0	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCGCTGGTTTGTTCGTGTA	NA	False	NA	0	True	AATAAA	-20	NA	27060781	27055807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_27056876_27059167
transcript_50033.known	chr7	+	1028	5	FSM	ENSMUSG00000040466.17	ENSMUST00000037399.16	1028	5	0	0	0	0	multi-exon	FALSE	canonical	2	274	junction_1	67.0834368529222	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGATTGATTGATTGATTG	NA	False	NA	NA	False	TTTAAA	-18	NA	27147402	27165569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27147622_27158680_27158846_27158987_27159078_27161991_27162121_27165144
transcript_50035.known	chr7	+	951	4	FSM	ENSMUSG00000040466.17	ENSMUST00000108358.8	951	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	187.642094306037	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGTGATTATTTTGGT	NA	False	NA	60	True	NA	NA	NA	27147456	27165423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27147622_27158680_27159059_27161991_27162121_27165144
transcript_50037.known	chr7	+	509	3	FSM	ENSMUSG00000040466.17	ENSMUST00000133750.8	509	3	0	0	0	0	multi-exon	FALSE	canonical	2	274	junction_1	60	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACTGAGCACCAACTGTG	NA	False	NA	9	True	ATTAAA	-22	NA	27147478	27159188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27147622_27158680_27158846_27158987
transcript_50038.known	chr7	+	1504	1	FSM	ENSMUSG00000040466.17	ENSMUST00000207799.2	1504	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAGAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	27147485	27148989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27147500_27149000
transcript_50039.known	chr7	+	1329	2	FSM	ENSMUSG00000055200.8	ENSMUST00000068641.8	1329	2	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_1	0	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGGAATTGTAATTAAATCT	NA	False	NA	84	True	AATAAA	-16	NA	27173192	27176789	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27173297_27175564
transcript_50040.known	chr7	+	1233	2	FSM	ENSMUSG00000008384.9	ENSMUST00000008528.8	1233	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGCTTCTTTGCAT	6589	False	NA	12	True	ATTAAA	-22	NA	27186334	27189741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27186504_27188677
transcript_50041.known	chr7	+	4497	3	FSM	ENSMUSG00000053198.15	ENSMUST00000065487.7	4497	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCATGTGTCTTGGTTCTCG	NA	False	NA	NA	False	AATAAA	-15	NA	27207230	27219466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27207529_27214675_27214873_27215464
transcript_50046.known	chr7	-	2282	14	FSM	ENSMUSG00000003363.16	ENSMUST00000117095.8	2282	14	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_13	66.1410542194063	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTATGAGATGGTATGTT	NA	False	NA	1	True	AGTAAA	-31	NA	27252637	27231424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27244612_27244688_27252422
transcript_50049.nic	chr7	-	2196	13	NIC	ENSMUSG00000003363.16	novel	2282	14	NA	NA	11	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_12	130.304211367093	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTATGAGATGGTATGTT	NA	False	NA	1	True	AGTAAA	-31	NA	27252626	27231424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_27231911_27231999_27232100_27233070_27233237_27235213_27235354_27237004_27237206_27238774_27238903_27238979_27239095_27240509_27240694_27241110_27241254_27241338_27241414_27241513_27241607_27242168_27242330_27252422
transcript_5005.known	chr10	-	1621	9	FSM	ENSMUSG00000020232.18	ENSMUST00000020454.11	1621	9	0	0	0	0	multi-exon	FALSE	canonical	3	490	junction_7	50.249222630803	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAAGTTAATATTTGTGGC	NA	False	NA	-11	True	AATAAA	-17	NA	81186258	81181884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81182312_81182393_81182527_81182674_81182891_81183269_81183343_81183819_81183867_81184329_81184451_81184719_81184924_81185213_81185323_81185967
transcript_50056.known	chr7	+	1989	11	FSM	ENSMUSG00000049643.16	ENSMUST00000187960.7	1989	11	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_10	97.3365296278843	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTCTGTGTATGT	449	False	NA	NA	False	AATAAA	-20	NA	27252710	27281524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27252779_27255838_27255960_27259976_27260029_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271127_27274015_27274166_27278137_27278209_27279761_27280117_27280775
transcript_50058.known	chr7	+	2701	10	FSM	ENSMUSG00000049643.16	ENSMUST00000067386.14	2701	10	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_8	25.2899238218224	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTGTGTCTGTGTATGT	396	False	NA	NA	False	AATAAA	-20	NA	27252657	27281524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27252779_27255838_27255960_27259976_27260029_27263910_27263999_27264084_27264200_27265071_27265154_27270988_27271127_27274015_27274166_27278137_27278209_27279761
transcript_50063.known	chr7	+	340	4	FSM	ENSMUSG00000049643.16	ENSMUST00000186501.2	340	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	145.525102836437	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCTGTCCTGCAGTATGC	7134	False	NA	NA	False	NA	NA	NA	27273891	27279845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27273927_27274015_27274166_27278137_27278209_27279761
transcript_50066.known	chr7	+	426	2	FSM	ENSMUSG00000049643.16	ENSMUST00000190903.2	426	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTTGTGTGTTTGTT	433	False	NA	NA	False	AGTAAA	-21	NA	27252694	27253496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27252779_27253154
transcript_50068.nnic	chr7	+	2935	14	NNC	ENSMUSG00000004056.16	novel	4544	14	NA	NA	-59	0	intron_retention	FALSE	canonical	1	1	junction_3	143.10921885298	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCAGTCCACATTTCCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	27291111	27338878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_27291305_27308047_27308179_27315665_27315694_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
transcript_50069.known	chr7	+	4544	14	FSM	ENSMUSG00000004056.16	ENSMUST00000108344.9	4544	14	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_6	55.340153093199	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCTTGTACTTTGGTG	NA	False	NA	6	True	AATAAA	-17	NA	27290976	27340251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27291305_27308047_27308179_27315665_27315795_27317632_27317745_27328261_27328416_27328720_27328853_27331842_27331909_27332623_27332693_27333986_27334110_27335463_27335593_27335688_27335904_27336347_27336436_27336516_27336620_27337486
transcript_50076.known	chr7	+	2052	3	FSM	ENSMUSG00000007944.9	ENSMUST00000008088.9	2052	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	3	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGAGCTGTACCCCAGTT	NA	False	NA	NA	False	NA	NA	NA	27353339	27356771	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27353773_27354336_27354520_27355335
transcript_50077.known	chr7	+	4612	6	FSM	ENSMUSG00000057093.15	ENSMUST00000120004.8	4612	6	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	18.2362276800878	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCTGAGTGATCTTCT	NA	False	NA	7	True	NA	NA	NA	27388764	27405909	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27388912_27390639_27390721_27391906_27391960_27392906_27393034_27398077_27398177_27401804
transcript_50078.nic	chr7	+	2151	5	ISM	ENSMUSG00000057093.15	ENSMUST00000120004.8	4612	6	194	3995	194	-1578	3prime_fragment	FALSE	canonical	3	19	junction_1	18.3762754659371	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTACTTTTAGTGATGG	NA	False	NA	12	True	AGTAAA	-16	NA	27388958	27401914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_27390721_27391906_27391960_27392906_27393034_27398077_27398177_27401804
transcript_50082.known	chr7	+	5896	5	FSM	ENSMUSG00000037640.16	ENSMUST00000108336.8	5896	5	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	38.9422649572415	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTGCTGAGTATTTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	27430813	27453127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27430896_27436360_27436414_27437727_27437855_27440381_27440481_27447592
transcript_50086.known	chr7	+	632	3	FSM	ENSMUSG00000109143.2	ENSMUST00000208208.2	632	3	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	10	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAAATTATATTCACACAA	2435	False	NA	NA	False	NA	NA	NA	27465097	27470397	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27465209_27468664_27468718_27469929
transcript_50087.known	chr7	+	3437	5	FSM	ENSMUSG00000078779.5	ENSMUST00000205701.2	3437	5	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_4	40.2639727299729	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAATAAATACACAAGCCTA	408	False	NA	NA	False	AAGAAA	-4	NA	27538031	27555863	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27538135_27542259_27542313_27543709_27543837_27545828_27545928_27552808
transcript_50089.known	chr7	+	3511	5	FSM	ENSMUSG00000020420.9	ENSMUST00000205534.2	3511	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	11.4127122105133	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAGTAAGAAAAATAT	3327	False	NA	NA	False	NA	NA	NA	27560009	27580250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27560182_27561961_27562015_27562813_27562941_27564994_27565094_27577190
transcript_50091.known	chr7	-	881	4	FSM	ENSMUSG00000070709.13	ENSMUST00000138583.8	881	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	23.6971634495683	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGTTCTCTCTTATGAA	NA	False	NA	NA	False	NA	NA	NA	27628855	27623457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_27624023_27625708_27625836_27626825_27626879_27628719
transcript_50092.known	chr7	-	3940	6	FSM	ENSMUSG00000063047.10	ENSMUST00000206685.2	3940	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	22.29798197147	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAGAGTAAAAACTATAA	NA	False	NA	NA	False	TTTAAA	-28	NA	27678572	27660785	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_27664295_27671047_27671147_27673143_27673271_27674177_27674231_27676164_27676259_27678514
transcript_50094.nic	chr7	-	518	6	NIC	ENSMUSG00000063047.10	novel	3940	6	NA	NA	0	-2087	combination_of_known_junctions	FALSE	canonical	3	31	junction_4	18.9166593245213	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCATAAAGCAATTAATAACT	NA	False	NA	NA	False	AATAAA	-17	NA	27678596	27664219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_27664295_27671047_27671147_27673143_27673271_27674177_27674231_27676176_27676259_27678514
transcript_50095.nnic	chr7	-	452	5	NIC	ENSMUSG00000063047.10	novel	3940	6	NA	NA	-16	-2087	combination_of_known_splicesites	FALSE	canonical	2	7	junction_4	28.5864915650732	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCATAAAGCAATTAATAACT	NA	False	NA	NA	False	AATAAA	-17	NA	27678612	27664219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_27664295_27671047_27671147_27673143_27673271_27674177_27674231_27678514
transcript_50096.nnic	chr7	-	4167	7	NNC	ENSMUSG00000096916.8	novel	6163	6	NA	NA	-63	1644	at_least_one_novel_splicesite	FALSE	canonical	3	46	junction_3	44.8578000154067	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGAATTGTGAGTCCATTA	NA	False	NA	-9	True	AATAAA	-19	NA	27713603	27686492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_27689948_27704643_27704743_27704891_27705052_27706738_27706866_27707808_27707862_27711760_27711876_27713445
transcript_50098.known	chr7	-	6163	6	FSM	ENSMUSG00000096916.8	ENSMUST00000180502.8	6163	6	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_5	35.6482818660311	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAATTGCAAACTCTTAATG	NA	False	NA	NA	False	AATAAA	-43	NA	27713540	27684278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_27689948_27704643_27704743_27706738_27706866_27707808_27707862_27711760_27711876_27713440
transcript_50103.known	chr7	-	1440	11	FSM	ENSMUSG00000030603.17	ENSMUST00000032824.10	1440	11	0	0	0	0	multi-exon	FALSE	canonical	3	2113	junction_5	109.082033351052	923	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTTCTTAGGTGTTTAAC	NA	False	NA	-4	True	AATAAA	-24	NA	27749526	27741131	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_27741346_27741525_27741582_27741763_27741933_27742074_27742152_27742233_27742402_27746410_27746505_27746597_27746708_27746790_27746938_27748217_27748405_27748528_27748628_27749407
transcript_50112.nic	chr7	+	1024	3	ISM	ENSMUSG00000078776.10	ENSMUST00000150948.2	7895	19	32574	-16	32574	0	3prime_fragment	FALSE	canonical	3	5	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTCTCCTGCTGTCT	1211	False	NA	NA	False	AATAAA	-15	NA	27861814	27864236	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_27862400_27863693_27863966_27864069
transcript_5012.known	chr10	-	597	2	FSM	ENSMUSG00000020232.18	ENSMUST00000134857.2	597	2	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCAAGTTAATATTTGTGG	NA	False	NA	-12	True	AATAAA	-16	NA	81182564	81181885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81182312_81182393
transcript_50125.known	chr7	+	1197	9	FSM	ENSMUSG00000046865.8	ENSMUST00000042405.8	1197	9	0	0	0	0	multi-exon	FALSE	canonical	3	2081	junction_3	279.620725269069	1942	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCTGTCTGGTGCCTATT	8531	False	NA	0	True	ATTAAA	-14	NA	27869134	27878694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_27869244_27873928_27874112_27874209_27874318_27874408_27874504_27875279_27875451_27876567_27876701_27877629_27877743_27878322_27878469_27878555
transcript_5013.known	chr10	-	3057	14	FSM	ENSMUSG00000020235.17	ENSMUST00000140901.8	3057	14	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_9	52.0083061185946	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATTGGTTGTTGCTGTTTA	NA	False	NA	NA	False	NA	NA	NA	81214350	81202055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81203385_81203474_81203568_81203964_81204070_81204356_81204591_81204907_81205093_81205171_81205275_81205804_81205871_81206031_81206216_81206298_81206382_81206530_81206659_81206788_81206853_81206928_81207055_81207178_81207289_81214103
transcript_50136.known	chr7	-	2618	9	FSM	ENSMUSG00000003436.12	ENSMUST00000108315.4	2618	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	6.12372435695795	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGTGAACTTTGTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	28001663	27992977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_27993352_27993465_27993551_27993768_27994349_27995712_27995936_27997943_27998162_27998317_27998561_27999591_27999650_28000708_28000991_28001108
transcript_50139.known	chr7	-	1515	11	FSM	ENSMUSG00000003438.18	ENSMUST00000081946.5	1515	11	0	0	0	0	multi-exon	FALSE	canonical	3	2125	junction_9	150.487341660354	399	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCCGTGTGTGGCTCTGT	2656	False	NA	-1	True	NA	NA	NA	28011497	28004940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28005456_28005847_28005955_28006246_28006404_28006977_28007077_28007169_28007275_28007572_28007693_28007778_28007838_28009503_28009526_28009720_28009753_28010293_28010445_28011349
transcript_50154.known	chr7	-	3513	30	FSM	ENSMUSG00000003435.10	ENSMUST00000003527.10	3513	30	0	0	0	0	multi-exon	FALSE	canonical	3	628	junction_29	71.450522531579	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGTGTACGAAGAGTTTT	NA	False	NA	-11	True	AATAAA	-18	NA	28038144	28014318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029442_28029455_28030004_28030071_28030794_28030955_28037776_28037861_28038119
transcript_50167.known	chr7	-	3755	29	FSM	ENSMUSG00000003435.10	ENSMUST00000209141.2	3755	29	0	0	0	0	multi-exon	FALSE	canonical	3	668	junction_13	69.0304945924152	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGTGTGTGTACGAAGAG	NA	False	NA	-15	True	AATAAA	-14	NA	28038131	28014322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28014696_28014773_28014870_28015147_28015352_28015433_28015603_28015707_28015867_28016208_28016315_28016410_28016539_28016640_28016744_28016817_28016926_28017161_28017247_28018163_28018290_28018379_28018527_28019391_28019539_28019644_28019801_28021427_28021565_28021644_28021739_28021888_28021995_28023150_28023222_28023317_28023408_28025374_28025627_28028127_28028197_28028444_28028476_28028683_28028750_28028840_28028910_28029007_28029078_28029442_28029455_28030004_28030071_28030794_28030955_28037776
transcript_5017.known	chr10	+	1758	6	FSM	ENSMUSG00000113262.2	ENSMUST00000144647.8	1758	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	364.148541120241	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCATGACCTTTTTGTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	81220299	81227394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_81220413_81221552_81221882_81222246_81222324_81223073_81223315_81226192_81226419_81226622
transcript_50172.known	chr7	+	1109	5	FSM	ENSMUSG00000037563.16	ENSMUST00000082134.6	1109	5	0	0	0	0	multi-exon	FALSE	canonical	3	19383	junction_3	806.134294023024	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTCTGGCCTTTATGGT	NA	False	NA	NA	False	NA	NA	NA	28050076	28052580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28050277_28050416_28050519_28051601_28051699_28051787_28051836_28051918
transcript_50173.known	chr7	+	628	4	FSM	ENSMUSG00000037563.16	ENSMUST00000152918.8	628	4	0	0	0	0	multi-exon	FALSE	canonical	3	20184	junction_3	558.517283130572	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050187	28052121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28050277_28050416_28050519_28051601_28051836_28051918
transcript_50174.known	chr7	+	518	4	FSM	ENSMUSG00000037563.16	ENSMUST00000155805.2	518	4	0	0	0	0	multi-exon	FALSE	canonical	3	19383	junction_2	895.518844022838	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTTTTTGTGTTGGTCTC	NA	False	NA	0	True	AATAAA	-21	NA	28050348	28052121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28050519_28051601_28051699_28051787_28051836_28051918
transcript_50175.nnic	chr7	-	807	5	NNC	ENSMUSG00000003444.9	novel	1281	4	NA	NA	-11	-590	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_2	249.415692168717	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGGTGGTTCCTGTTGCTGA	NA	False	NA	-19	True	AATGAA	-19	NA	28092144	28086160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_28086450_28086623_28086729_28090236_28090322_28090514_28090574_28091875
transcript_50176.known	chr7	-	1281	4	FSM	ENSMUSG00000003444.9	ENSMUST00000003536.9	1281	4	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_2	10.3387082795139	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTAGCTCCAAAGCAG	NA	False	NA	NA	False	NA	NA	NA	28092133	28085570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28086450_28090236_28090322_28090514_28090574_28091875
transcript_50177.known	chr7	-	2790	2	FSM	ENSMUSG00000044786.7	ENSMUST00000051241.7	2790	2	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGAAATTTGTCTTTTTC	5673	False	NA	-2	True	AATAAA	-18	NA	28079678	28076208	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28077919_28078598
transcript_50179.known	chr7	+	2003	14	FSM	ENSMUSG00000003437.15	ENSMUST00000003529.9	2003	14	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_5	16.9726546514433	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTAAAGTCTCTGTTCC	569	False	NA	20	True	AATAAA	-21	NA	28092375	28098813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28092680_28093093_28093124_28094467_28094561_28094842_28094965_28095053_28095121_28095195_28095298_28095376_28095483_28095558_28095628_28095708_28095813_28096034_28096152_28096245_28096375_28097872_28097979_28098083_28098175_28098250
transcript_50182.known	chr7	+	1997	13	FSM	ENSMUSG00000003437.15	ENSMUST00000122857.8	1997	13	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_4	16.6205612286576	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATCTCCTAAAGTCTCT	659	False	NA	15	True	AATAAA	-16	NA	28092465	28098808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28092680_28093093_28093124_28094467_28094561_28094842_28095121_28095195_28095298_28095376_28095483_28095558_28095628_28095708_28095813_28096034_28096152_28096245_28096375_28097872_28097979_28098083_28098175_28098250
transcript_50186.known	chr7	+	657	7	FSM	ENSMUSG00000060791.16	ENSMUST00000108292.9	657	7	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_1	45.6070170039655	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGACATGGTATCTGCAAAAT	1815	False	NA	NA	False	AATAAA	-26	NA	28136871	28145971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28137000_28140858_28140956_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
transcript_50187.known	chr7	+	637	7	FSM	ENSMUSG00000060791.16	ENSMUST00000078845.13	637	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	149.1011029097	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATAACGACATGGTATCT	146	False	NA	NA	False	AATAAA	-19	NA	28140351	28145964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28140467_28140858_28140956_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
transcript_50189.known	chr7	+	477	6	FSM	ENSMUSG00000060791.16	ENSMUST00000108289.8	477	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	171.128723480309	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATCCAAGAGCGAAATAAAGG	1855	False	NA	NA	False	NA	NA	NA	28136911	28145928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28137000_28141093_28141144_28142644_28142695_28144277_28144361_28145341_28145416_28145796
transcript_5019.known	chr10	+	1444	5	FSM	ENSMUSG00000078440.11	ENSMUST00000072751.13	1444	5	0	0	0	0	multi-exon	FALSE	canonical	3	742	junction_3	32.2286751201473	672	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGGCTCCTGCTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	81220261	81224186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_81220413_81221552_81221882_81222246_81222324_81223073_81223315_81223540
transcript_50190.nnic	chr7	+	499	5	NIC	ENSMUSG00000060791.16	novel	657	7	NA	NA	11	0	combination_of_known_splicesites	FALSE	canonical	2	11	junction_1	188.931866025824	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGACATGGTATCTGCAAAAT	1826	False	NA	NA	False	AATAAA	-26	NA	28136882	28145971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_28137000_28142644_28142695_28144277_28144361_28145341_28145416_28145796
transcript_50191.known	chr7	+	971	2	FSM	ENSMUSG00000099417.2	ENSMUST00000190841.2	971	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAAAAAAAAAAAAGGC	4392	False	NA	NA	False	AATAAA	-8	NA	28191974	28197138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28192135_28196327
transcript_50196.known	chr7	-	2899	10	FSM	ENSMUSG00000030602.14	ENSMUST00000108283.8	2899	10	0	0	0	0	multi-exon	TRUE	canonical	3	622	junction_9	35.4843036069349	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTATGTGTGTGGT	4596	False	NA	-3	True	ATTAAA	-21	NA	28297610	28258243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28259231_28259569_28259705_28260223_28260350_28261962_28262090_28262372_28262507_28263630_28264072_28264237_28264697_28267458_28267724_28269217_28269292_28297459
transcript_502.known	chr1	+	4322	8	FSM	ENSMUSG00000004768.15	ENSMUST00000088287.10	4322	8	0	0	0	0	multi-exon	FALSE	canonical	2	71	junction_6	20.1190335305671	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATTGTGTGTGGTGTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	33758975	33781645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_33759255_33760688_33760781_33762866_33763087_33764014_33764101_33773782_33773940_33775880_33775964_33777368_33777462_33778333
transcript_5020.nic	chr10	+	1497	5	NIC	ENSMUSG00000078440.11	novel	1444	5	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	318.019653480724	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGCTGGCTCCTGCTGTGTG	NA	False	NA	15	True	AATAAA	-19	NA	81220256	81224186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_81220461_81221552_81221882_81222246_81222324_81223073_81223315_81223540
transcript_50200.known	chr7	+	1946	6	FSM	ENSMUSG00000037463.15	ENSMUST00000039998.11	1946	6	0	0	0	0	multi-exon	TRUE	canonical	2	8	junction_2	20.7460839678239	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTCATATCTTTTTCTT	8845	False	NA	NA	False	AATAAA	-19	NA	28392273	28398763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28392398_28392694_28393076_28394158_28394268_28394430_28394527_28396064_28396201_28397663
transcript_50203.nic	chr7	+	1921	6	NIC	ENSMUSG00000037463.15	novel	1948	5	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_1	21.4811545313561	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTTCATATCTTTTTCTT	9003	False	NA	NA	False	AATAAA	-19	NA	28392431	28398763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_28392528_28392694_28393076_28394155_28394268_28394430_28394527_28396064_28396201_28397663
transcript_50204.known	chr7	+	1948	5	FSM	ENSMUSG00000037463.15	ENSMUST00000108281.8	1948	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	9.31396800509858	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGTTCATATCTTTTT	9140	False	NA	NA	False	AATAAA	-16	NA	28392568	28398760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28393076_28394155_28394268_28394430_28394527_28396064_28396201_28397663
transcript_50206.known	chr7	+	1806	8	FSM	ENSMUSG00000030598.16	ENSMUST00000108278.9	1806	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_7	33.4310133418242	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	28416256	28437563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763_28436972_28437089
transcript_50208.nnic	chr7	+	1820	8	NNC	ENSMUSG00000030598.16	novel	1806	8	NA	NA	-51	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	45.8933991074169	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTTTTTTTCAATT	NA	False	NA	NA	False	NA	NA	NA	28416177	28437563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_28416464_28424039_28424153_28431902_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763_28436972_28437089
transcript_50212.known	chr7	+	1958	7	FSM	ENSMUSG00000030598.16	ENSMUST00000032818.13	1958	7	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_6	22.6838170411321	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	28416228	28437569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28436763
transcript_50213.known	chr7	+	1563	7	FSM	ENSMUSG00000030598.16	ENSMUST00000108279.9	1563	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_6	37.5340586075574	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTTTCAATTCTGTGT	NA	False	NA	NA	False	NA	NA	NA	28416297	28437569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28416464_28424039_28424153_28431837_28432298_28432853_28432966_28434701_28434798_28435492_28435629_28437089
transcript_50222.known	chr7	-	722	3	FSM	ENSMUSG00000045948.9	ENSMUST00000056078.9	722	3	0	0	0	0	multi-exon	FALSE	canonical	3	503	junction_2	218	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCAGTGTGCGGTGTCTGT	1644	False	NA	-6	True	AATAAA	-23	NA	28441245	28439066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28439665_28440911_28440980_28441189
transcript_50224.known	chr7	-	883	2	FSM	ENSMUSG00000045948.9	ENSMUST00000171183.2	883	2	0	0	0	0	multi-exon	FALSE	canonical	3	939	junction_1	0	294	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGTGTGCGGTGTCTGTC	1694	False	NA	-5	True	AATAAA	-24	NA	28441195	28439065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28439665_28440911
transcript_50227.known	chr7	+	1868	16	FSM	ENSMUSG00000070699.6	ENSMUST00000094632.6	1868	16	0	0	0	0	multi-exon	TRUE	canonical	3	180	junction_5	21.0516824347446	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACAGGAAGTGCTGGCTG	278	False	NA	25	True	AATAAA	-33	NA	28441426	28453296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28441708_28443666_28443763_28445876_28445907_28446165_28446307_28446383_28446439_28446911_28446976_28447256_28447363_28448379_28448428_28449001_28449111_28449305_28449352_28449435_28449524_28449606_28449717_28451666_28451761_28451850_28451944_28452027_28452094_28452855
transcript_5023.known	chr10	+	786	4	FSM	ENSMUSG00000078440.11	ENSMUST00000142346.8	786	4	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	334.282315815041	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGAGGCTGCCTTGGCCC	NA	False	NA	NA	False	NA	NA	NA	81220292	81223285	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_81220461_81221552_81221882_81222246_81222324_81223073
transcript_50232.known	chr7	+	1790	2	FSM	ENSMUSG00000070699.6	ENSMUST00000207897.2	1790	2	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAACAAG	284	False	NA	NA	False	NA	NA	NA	28441432	28445181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28441708_28443666
transcript_50233.known	chr7	+	1843	16	FSM	ENSMUSG00000015149.15	ENSMUST00000072965.5	1843	16	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	28.236776649532	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGACTTGTGTGGCCTCT	NA	False	NA	12	True	ATTAAA	-21	NA	28466191	28488085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28466293_28467056_28467104_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
transcript_50235.nnic	chr7	+	1774	16	NNC	ENSMUSG00000015149.15	novel	1843	16	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_15	27.6903513079115	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGACTTGTGTGGCCTCT	NA	False	NA	12	True	ATTAAA	-21	NA	28466181	28488085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_28466293_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341_28487683_28487714
transcript_50236.known	chr7	+	1828	15	FSM	ENSMUSG00000015149.15	ENSMUST00000122915.8	1828	15	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	14.0365775815931	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGACTTGTGTGGCCTCT	NA	False	NA	12	True	ATTAAA	-21	NA	28466159	28488085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28466293_28471235_28471285_28471519_28471634_28476282_28476325_28476420_28476528_28476615_28476673_28478346_28478416_28482193_28482324_28484804_28484865_28485088_28485145_28485230_28485308_28485389_28485442_28487007_28487079_28487186_28487254_28487341
transcript_50240.known	chr7	-	1243	6	FSM	ENSMUSG00000030595.16	ENSMUST00000085851.12	1243	6	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	23.6761483354029	504	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGCCTTCCTGCTTATTT	NA	False	NA	1	True	AATAAA	-33	NA	28465939	28458456	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28458630_28459251_28459522_28459601_28459691_28461026_28461361_28461450_28461557_28465668
transcript_50241.known	chr7	+	1054	5	FSM	ENSMUSG00000096257.3	ENSMUST00000178767.3	1054	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCGGGCTCGCATCACACTT	3632	False	NA	NA	False	AATAAA	-16	NA	28455598	28458393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28455683_28455888_28455930_28456079_28456168_28456465_28456993_28458079
transcript_50246.known	chr7	+	1898	13	FSM	ENSMUSG00000015165.17	ENSMUST00000172529.8	1898	13	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	1654.75498983653	552	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGCTGGGGCTCCAAG	NA	False	NA	16	True	AATAAA	-19	NA	28508232	28521674	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28508285_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28517958_28518068_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
transcript_50247.known	chr7	+	2142	13	FSM	ENSMUSG00000015165.17	ENSMUST00000038572.15	2142	13	0	0	0	0	multi-exon	FALSE	canonical	3	4757	junction_8	508.744178235868	646	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGGTGGGTTGTCTGCTTT	NA	False	NA	33	True	AATAAA	-36	NA	28510314	28521691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28510594_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28517958_28518068_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
transcript_50249.known	chr7	+	2180	12	FSM	ENSMUSG00000015165.17	ENSMUST00000174477.8	2180	12	0	0	0	0	multi-exon	FALSE	canonical	3	4757	junction_7	501.59715158615	516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATAAAACTATTTGCTGG	NA	False	NA	7	True	AATAAA	-10	NA	28510361	28521665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28510594_28512703_28512823_28513278_28513517_28513626_28513713_28514523_28514621_28514704_28514778_28517885_28518350_28519577_28519700_28519969_28520172_28520640_28520699_28520816_28520913_28521272
transcript_5025.known	chr10	-	3348	10	FSM	ENSMUSG00000055053.19	ENSMUST00000020461.15	3348	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_9	5.66557723732532	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAATCCATTA	3912	False	NA	NA	False	AAAAAG	-44	NA	81263007	81234971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81236906_81239185_81239263_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81262909
transcript_50253.known	chr7	+	1267	10	FSM	ENSMUSG00000053898.13	ENSMUST00000066264.13	1267	10	0	0	0	0	multi-exon	TRUE	canonical	3	645	junction_5	36.3137901908447	438	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGTGTCTTTACTGCAG	NA	False	NA	14	True	AATAAA	-12	NA	28524641	28531672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28524838_28525298_28525504_28525609_28525699_28529224_28529350_28529426_28529476_28529638_28529704_28530641_28530713_28530813_28530886_28531141_28531293_28531428
transcript_50254.nnic	chr7	+	544	4	NNC	ENSMUSG00000053964.18	novel	1298	8	NA	NA	2519	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	0	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCTTGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-11	NA	28537879	28541126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_28538088_28539927_28539960_28540288_28540378_28540911
transcript_50255.nic	chr7	-	3871	21	NIC	ENSMUSG00000054808.16	novel	3877	21	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	395	junction_14	307.041247229098	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGTGTCATCTTCTCCC	NA	False	NA	-1	True	AATAAA	-24	NA	28661759	28592672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28609327_28609414_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
transcript_50256.known	chr7	-	3877	21	FSM	ENSMUSG00000054808.16	ENSMUST00000068045.14	3877	21	0	0	0	0	multi-exon	FALSE	canonical	3	997	junction_13	138.805763569097	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGGTGTCATCTTCTCCC	NA	False	NA	-1	True	AATAAA	-24	NA	28661765	28592672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28610914_28611001_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
transcript_50257.nic	chr7	-	3466	21	NIC	ENSMUSG00000054808.16	novel	3877	21	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	395	junction_14	307.041247229098	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAGGAAAAA	NA	False	NA	NA	False	AAAACA	-37	NA	28661759	28593077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_28593813_28593925_28594085_28594856_28594938_28595513_28595661_28596300_28596481_28597273_28597409_28597493_28597677_28597763_28597905_28598044_28598154_28601301_28601453_28603965_28604114_28604649_28604881_28606396_28606490_28609327_28609414_28611664_28611747_28612802_28612882_28614637_28614726_28615584_28615672_28618096_28618217_28618378_28618494_28661443
transcript_5026.known	chr10	-	6237	9	FSM	ENSMUSG00000055053.19	ENSMUST00000105321.10	6237	9	0	0	0	0	multi-exon	TRUE	canonical	2	12	junction_1	7.0611171212493	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTTCTTCCTTTCTG	3898	False	NA	NA	False	NA	NA	NA	81263021	81232019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81236906_81240657_81240843_81241922_81242049_81243388_81243514_81243939_81244064_81244168_81244244_81245444_81245517_81256100_81256633_81262909
transcript_50268.nic	chr7	-	960	8	NIC	ENSMUSG00000053565.11	novel	774	8	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	86	junction_6	1203.94528318274	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTCTCTTGCCTGT	NA	False	NA	-5	True	AATAAA	-16	NA	28681301	28670797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679743_28679968_28681098
transcript_50270.known	chr7	-	774	8	FSM	ENSMUSG00000053565.11	ENSMUST00000066070.7	774	8	0	0	0	0	multi-exon	FALSE	canonical	3	2641	junction_1	370.651715060852	1409	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTGTCTCTTGCCTGTA	NA	False	NA	-4	True	AATAAA	-17	NA	28681239	28670796	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28679868_28679968_28681098
transcript_50275.known	chr7	-	647	7	FSM	ENSMUSG00000053565.11	ENSMUST00000207683.2	647	7	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_6	1263.25735259641	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTATTGTCTCTTGCCTGT	NA	False	NA	-5	True	AATAAA	-16	NA	28681212	28670797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28670864_28671956_28672083_28673573_28673652_28674027_28674095_28676625_28676701_28677294_28677416_28681098
transcript_50283.known	chr7	+	2724	32	FSM	ENSMUSG00000037337.12	ENSMUST00000085835.8	2724	32	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_17	22.4346431975332	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTCGGAGGAGAGATTTT	NA	False	NA	22	True	AATAAA	-27	NA	28682252	28702703	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28682480_28682639_28682698_28682814_28682906_28683507_28683573_28686072_28686129_28686216_28686265_28686412_28686456_28686539_28686613_28687498_28687631_28688018_28688082_28688179_28688262_28688760_28688875_28689098_28689178_28690412_28690472_28690572_28690617_28690705_28690751_28692614_28692658_28693392_28693556_28693629_28693713_28694889_28694914_28695513_28695599_28697876_28697954_28698037_28698099_28699197_28699307_28699388_28699448_28699615_28699720_28700359_28700535_28701031_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
transcript_50285.nnic	chr7	+	1561	18	NIC	ENSMUSG00000037337.12	novel	2764	32	NA	NA	8116	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_1	42.0851830191789	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCGGAGGAGAGATTTTT	NA	False	NA	23	True	AATAAA	-28	NA	28690401	28702704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_28690472_28690705_28690751_28692614_28692658_28693392_28693556_28693629_28693713_28694889_28694914_28695513_28695599_28697876_28697954_28698037_28698099_28699197_28699307_28699388_28699448_28699615_28699720_28700359_28700535_28701031_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
transcript_50286.nnic	chr7	+	545	6	NNC	ENSMUSG00000037337.12	novel	523	5	NA	NA	-239	0	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_1	64.9966152964906	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCGGAGGAGAGATTTTT	6723	False	NA	23	True	AATAAA	-28	NA	28700727	28702704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_28700810_28701031_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
transcript_50288.known	chr7	+	523	5	FSM	ENSMUSG00000037337.12	ENSMUST00000208784.2	523	5	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	9.82344135219425	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAATTCTCGGAGGAGAGA	6962	False	NA	18	True	AATAAA	-23	NA	28700966	28702699	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28701095_28701173_28701264_28701344_28701416_28701772_28701829_28702521
transcript_5029.known	chr10	+	401	2	FSM	ENSMUSG00000085327.2	ENSMUST00000156260.2	401	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGGACACAGCAGACATG	NA	False	NA	NA	False	AATAAA	-14	NA	81245408	81247413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_81245600_81247203
transcript_50291.known	chr7	+	4621	17	FSM	ENSMUSG00000030589.16	ENSMUST00000032811.12	4621	17	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	19.1978799285234	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCCTTATTGTCTATTTTG	188	False	NA	NA	False	TTTAAA	-6	NA	28834357	28853386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28834521_28836965_28837151_28838235_28838342_28838467_28838531_28839666_28839799_28839912_28840067_28842390_28842565_28844556_28844674_28845232_28845509_28847791_28847873_28847968_28848074_28848198_28848318_28848411_28848557_28849223_28849261_28849346_28849482_28849603_28849717_28850870
transcript_50292.known	chr7	+	2296	17	FSM	ENSMUSG00000030589.16	ENSMUST00000159975.8	2296	17	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	20.8408215708978	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGACTGCCAGTCACACTCC	188	False	NA	20	True	AAAAAG	-19	NA	28834357	28851046	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28834521_28836965_28837151_28838235_28838342_28838467_28838531_28839666_28839799_28839912_28840067_28842390_28842565_28844556_28844674_28845232_28845509_28847791_28847873_28847968_28848074_28848198_28848318_28848411_28848572_28849223_28849261_28849346_28849482_28849603_28849717_28850870
transcript_50298.known	chr7	-	1293	8	FSM	ENSMUSG00000030590.16	ENSMUST00000164589.9	1293	8	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_3	23.9565934002925	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGATCTTGTTTCTGTTAG	NA	False	NA	-1	True	AATAAA	-21	NA	28855659	28851934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309_28855456_28855554
transcript_50299.known	chr7	-	1189	7	FSM	ENSMUSG00000030590.16	ENSMUST00000134176.8	1189	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	138.986410206978	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-19	NA	28855608	28851936	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28852273_28852746_28852915_28853843_28853957_28854040_28854119_28854576_28854783_28855099_28855235_28855455
transcript_5030.known	chr10	-	2841	14	FSM	ENSMUSG00000020238.15	ENSMUST00000118498.8	2841	14	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_4	76.7224306246012	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTCCAGGTGTCCTGAG	NA	False	NA	-30	True	AATAAA	-18	NA	81332160	81322290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324190_81324261_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81327003_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
transcript_50304.known	chr7	+	1241	1	FSM	ENSMUSG00000099098.5	ENSMUST00000184073.2	1241	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCGTGTGTGTGTATGTGT	NA	False	NA	NA	False	AATAAA	-23	NA	28855104	28856345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28855100_28856300
transcript_50305.known	chr7	-	1632	6	FSM	ENSMUSG00000030590.16	ENSMUST00000150431.8	1632	6	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_3	26.3210942021794	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-19	NA	28855608	28851936	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28855456_28855554
transcript_50306.known	chr7	-	1359	7	FSM	ENSMUSG00000030590.16	ENSMUST00000123545.8	1359	7	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_3	25.8698666405531	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGGATCTTGTTTCTGTT	NA	False	NA	-3	True	AATAAA	-19	NA	28855628	28851936	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28852273_28852746_28852915_28853843_28853961_28854040_28854119_28854576_28854783_28855099_28855235_28855309
transcript_50308.known	chr7	-	1512	7	FSM	ENSMUSG00000030591.18	ENSMUST00000186182.2	1512	7	0	0	0	0	multi-exon	FALSE	canonical	3	1581	junction_5	143.933626678719	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGAGTGTATCCAGTCTG	NA	False	NA	-10	True	AATAAA	-15	NA	28880098	28873612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876657_28878343_28878447_28878567_28878641_28879701
transcript_5031.known	chr10	-	3118	14	FSM	ENSMUSG00000020238.15	ENSMUST00000020463.14	3118	14	0	0	0	0	multi-exon	TRUE	canonical	3	251	junction_4	53.9264236863306	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGACCAGAACCCTGCTCC	NA	False	NA	NA	False	ATTAAA	-18	NA	81332226	81322082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324193_81324261_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81327003_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
transcript_50314.nnic	chr7	-	1112	6	NNC	ENSMUSG00000030591.18	novel	1391	7	NA	NA	9	-66	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	729.62823410282	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGAAACTGACTTTGTC	NA	False	NA	-6	True	ATTAAA	-16	NA	28879968	28873678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_28874173_28874835_28874948_28875497_28875599_28876490_28876608_28878619_28878641_28879701
transcript_50320.known	chr7	+	1126	8	FSM	ENSMUSG00000030588.13	ENSMUST00000108238.8	1126	8	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_1	273.775194535329	694	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6037	False	NA	12	True	AATAAA	-15	NA	28937753	28946954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28937862_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
transcript_50323.known	chr7	+	1111	8	FSM	ENSMUSG00000030588.13	ENSMUST00000032809.10	1111	8	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_1	365.371993833067	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6061	False	NA	12	True	AATAAA	-15	NA	28937777	28946954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28937871_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
transcript_50325.known	chr7	+	1153	8	FSM	ENSMUSG00000030588.13	ENSMUST00000142519.3	1153	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	530.605237787328	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGGGGCCTTCTTCTCCTT	6235	False	NA	28	True	NA	NA	NA	28937951	28947022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28938019_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
transcript_50326.nic	chr7	+	1193	8	NIC	ENSMUSG00000030588.13	novel	1111	8	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	150	junction_1	482.335940174142	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCAGCCTCCACTTCTGACC	6145	False	NA	12	True	AATAAA	-15	NA	28937861	28946954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_28938037_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945090_28945247_28945325_28945420_28946661
transcript_50333.known	chr7	+	1086	7	FSM	ENSMUSG00000030588.13	ENSMUST00000108237.2	1086	7	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_5	686.982471877316	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAATGGGGGGCCTTCTTCT	6160	False	NA	24	True	NA	NA	NA	28937876	28947018	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28938037_28943494_28943728_28943823_28943929_28944019_28944099_28944206_28944265_28945325_28945420_28946661
transcript_50337.known	chr7	-	1466	4	FSM	ENSMUSG00000030587.6	ENSMUST00000032808.6	1466	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	7.36357401145817	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTGGGCTCTTTTTTTTT	1783	False	NA	NA	False	AATAGA	-4	NA	28947891	28945985	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28947160_28947321_28947391_28947552_28947666_28947781
transcript_50339.known	chr7	-	443	3	FSM	ENSMUSG00000030587.6	ENSMUST00000151339.2	443	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGCTCCCCAGCGCCCTCTG	1911	False	NA	-11	True	ATTAAA	-14	NA	28947763	28946996	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28947160_28947321_28947391_28947552
transcript_5034.nic	chr10	-	2980	13	NIC	ENSMUSG00000020238.15	novel	2841	14	NA	NA	-1	0	intron_retention	FALSE	canonical	3	345	junction_12	32.4987179234299	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCTCCAGGTGTCCTGAG	NA	False	NA	-30	True	AATAAA	-18	NA	81332227	81322290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_81323440_81323513_81323593_81323680_81323735_81324028_81324301_81324382_81324471_81325635_81325955_81326060_81326150_81327003_81327108_81327810_81327892_81328661_81328757_81328896_81329042_81329182_81329374_81331913
transcript_50342.known	chr7	-	1304	7	FSM	ENSMUSG00000074227.13	ENSMUST00000207601.2	1304	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	472.77185007382	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTGTTTTTGTTTTTGGT	467	False	NA	2	True	AATAAA	-39	NA	28981337	28955747	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959481_28959555_28959795_28959856_28980936
transcript_50343.known	chr7	-	1384	7	FSM	ENSMUSG00000074227.13	ENSMUST00000098604.12	1384	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	452.801066204084	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTATGTAGTTTGGTTT	467	False	NA	-16	True	AATAAA	-21	NA	28981337	28955765	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28963019_28963191_28980936
transcript_50344.nnic	chr7	-	921	6	NNC	ENSMUSG00000074227.13	novel	1211	6	NA	NA	205	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	491.498931840141	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTATGTAGTTTGGTTT	674	False	NA	-16	True	AATAAA	-21	NA	28981130	28955765	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_28956178_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28980936
transcript_50345.known	chr7	-	1211	6	FSM	ENSMUSG00000074227.13	ENSMUST00000108236.5	1211	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	398.697679953119	372	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTACTATGTAGTTTGGTTT	469	False	NA	-16	True	AATAAA	-21	NA	28981335	28955765	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_28956263_28957592_28957632_28957851_28958014_28958823_28958878_28959795_28959856_28980936
transcript_5035.known	chr10	-	2386	1	FSM	ENSMUSG00000044199.7	ENSMUST00000053646.7	2386	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCCGTTTCTCAGTGTAT	7363	False	NA	NA	False	ATTAAA	-17	NA	81335966	81333580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81333600_81336000
transcript_50351.known	chr7	+	950	4	FSM	ENSMUSG00000037166.6	ENSMUST00000048187.6	950	4	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_2	2.05480466765633	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGTGCACAATGGGTTTAG	4007	False	NA	NA	False	ATTAAA	-19	NA	28988736	28993226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_28988961_28990934_28991016_28991475_28991509_28992614
transcript_50352.known	chr7	+	2309	12	FSM	ENSMUSG00000030584.15	ENSMUST00000049977.13	2309	12	0	0	0	0	multi-exon	TRUE	canonical	3	46	junction_7	12.1008161735527	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTTCCATCTCTAACCTC	1789	False	NA	10	True	ATTAAA	-26	NA	29003400	29017013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29003538_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013563_29013615_29013707_29013828_29015048_29015162_29015668_29015751_29015905
transcript_50353.known	chr7	+	1574	12	FSM	ENSMUSG00000030584.15	ENSMUST00000065181.12	1574	12	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	16.304438375602	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAATTAATATATACAAAGAG	5825	False	NA	NA	False	AAAAAG	-27	NA	29007436	29016328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29007524_29008835_29008997_29009069_29009178_29010689_29010818_29011031_29011122_29012272_29012352_29012506_29012639_29013563_29013615_29013707_29013828_29015048_29015162_29015668_29015751_29015905
transcript_50354.known	chr7	+	4113	5	FSM	ENSMUSG00000046185.11	ENSMUST00000032802.5	4113	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_4	7.79021822544144	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAATTAGGGAAAAAAGA	NA	False	NA	NA	False	AAGAAA	-21	NA	29467976	29479246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29468121_29470763_29470829_29474762_29474890_29475329_29475417_29475556
transcript_50356.known	chr7	+	3558	5	FSM	ENSMUSG00000047473.15	ENSMUST00000032803.12	3558	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	9.39414711402797	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTGATGTTAAACATGAATT	NA	False	NA	NA	False	AATAAA	-16	NA	29483422	29494127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29484327_29485643_29485729_29487473_29487601_29488762_29488862_29491784
transcript_50357.nic	chr7	+	1561	4	ISM	ENSMUSG00000047473.15	ENSMUST00000032803.12	3558	5	8	4912	8	-2122	5prime_fragment	FALSE	canonical	3	6	junction_3	9.62635271879577	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATTTGTATGGTTGCT	NA	False	NA	NA	False	AAGAAA	-12	NA	29483430	29489215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_29484327_29485643_29485729_29487473_29487601_29488762
transcript_50358.nic	chr7	+	1558	4	NIC	ENSMUSG00000047473.15	novel	3707	4	NA	NA	8	-2122	combination_of_known_junctions	FALSE	canonical	2	12	junction_3	6.97614984548545	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTATTTGTATGGTTGCT	NA	False	NA	NA	False	AAGAAA	-12	NA	29483430	29489215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_29484327_29485643_29485729_29487473_29487601_29488765
transcript_5036.nic	chr10	-	1308	4	ISM	ENSMUSG00000034792.9	ENSMUST00000150586.2	661	5	412	-774	412	0	3prime_fragment	FALSE	canonical	1	3	junction_2	34.1792659696229	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAATCAGGGAACTGAGGAAG	9323	False	NA	NA	False	AATAAA	-18	NA	81348061	81338146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_81338940_81343761_81343916_81345119_81345250_81347830
transcript_50361.nnic	chr7	-	2863	5	NNC	ENSMUSG00000050855.17	novel	2764	5	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_4	9.83298021964857	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGTGTGACTTTGTGGTG	3416	False	NA	-4	True	AATAAA	-21	NA	29553101	29543360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_29545674_29545893_29545990_29546258_29546386_29550366_29550443_29552850
transcript_50362.known	chr7	-	2764	5	FSM	ENSMUSG00000050855.17	ENSMUST00000085792.5	2764	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	10.6624340560681	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGGTGTGACTTTGTGGTG	3444	False	NA	-4	True	AATAAA	-21	NA	29553073	29543360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_29545674_29545893_29545990_29546258_29546386_29550366_29550443_29552921
transcript_50364.nnic	chr7	+	2354	4	NNC	ENSMUSG00000058402.15	novel	2537	4	NA	NA	-18	-203	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	17.1334630345285	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGTTGCTGTGATATAGAA	NA	False	NA	NA	False	ATTAAA	-14	NA	29559385	29575727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_29559519_29560438_29560494_29572316_29572359_29573603
transcript_50367.known	chr7	+	2537	4	FSM	ENSMUSG00000058402.15	ENSMUST00000074876.13	2537	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	4.02768199119819	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTAGCTGCTATTTTCATT	NA	False	NA	NA	False	CATAAA	-1	NA	29559403	29575930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29559519_29560440_29560494_29572316_29572359_29573603
transcript_50369.known	chr7	+	2744	3	FSM	ENSMUSG00000058402.15	ENSMUST00000057652.7	2744	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	17.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAATGTGTAGTTTTGTG	NA	False	NA	NA	False	GATAAA	-19	NA	29559465	29576252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29559519_29572316_29572359_29573603
transcript_50373.known	chr7	-	3150	5	FSM	ENSMUSG00000062040.15	ENSMUST00000053521.15	3150	5	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_4	19.4084388862165	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATCTTCTCTTCTGTCAC	NA	False	NA	0	True	AATATA	-16	NA	29605529	29593140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603485_29605478
transcript_50374.known	chr7	-	3381	5	FSM	ENSMUSG00000062040.15	ENSMUST00000159920.2	3381	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	18.9802528961023	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATCTTCTCTTCTGTCAC	NA	False	NA	0	True	AATATA	-16	NA	29605957	29593140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_29595852_29598176_29598304_29599662_29599764_29603324_29603485_29605675
transcript_50375.known	chr7	+	2614	5	FSM	ENSMUSG00000099689.7	ENSMUST00000186475.2	2614	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	3.53553390593274	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTAAGTTTCATAATTTTC	NA	False	NA	27	True	AATAAA	-24	NA	29607941	29616232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29608077_29609607_29609673_29611593_29611721_29612014_29612111_29614041
transcript_5038.known	chr10	-	1046	2	FSM	ENSMUSG00000034792.9	ENSMUST00000147908.2	1046	2	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	0	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAACTGAGGAAGAGAGAAA	6420	False	NA	NA	False	AATAAA	-25	NA	81344007	81338139	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81338940_81343761
transcript_50382.known	chr7	+	643	5	FSM	ENSMUSG00000063623.5	ENSMUST00000208342.2	643	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	40.6348065087063	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAACCGTTCCAGCCCATGT	NA	False	NA	NA	False	NA	NA	NA	29655764	29664654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29656012_29656384_29656460_29660317_29660445_29662570_29662667_29664556
transcript_50386.known	chr7	+	4005	10	FSM	ENSMUSG00000074221.13	ENSMUST00000148442.8	4005	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	68.6080296204101	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAAATTTGTACACT	NA	False	NA	NA	False	NA	NA	NA	29683379	29724536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29683654_29684684_29684752_29687013_29687232_29688473_29688533_29697174_29697302_29697539_29697636_29713264_29713315_29714490_29714615_29716591_29716688_29721642
transcript_50389.nnic	chr7	+	1140	7	NNC	ENSMUSG00000074221.13	novel	4005	10	NA	NA	0	-6287	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_6	92.0048307910454	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAACTCCTGAAAGTGTGTG	NA	False	NA	NA	False	AATAAA	-25	NA	29683379	29708230	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_29683654_29684684_29684752_29687006_29687232_29688473_29688533_29697174_29697302_29697539_29697636_29707938
transcript_5039.known	chr10	-	3414	7	FSM	ENSMUSG00000034781.6	ENSMUST00000043604.6	3414	7	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_6	26.2339898266013	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTTTGTGATTATTAGT	4223	False	NA	0	True	AATAAA	-19	NA	81381024	81364557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81366820_81366925_81367080_81367155_81367286_81368229_81368359_81369085_81369241_81370913_81371099_81380625
transcript_50390.nic	chr7	+	1069	4	NIC	ENSMUSG00000074221.13	novel	4005	10	NA	NA	-52	247	combination_of_known_junctions	FALSE	canonical	3	234	junction_3	16.0485374896143	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAATATTCATGTTTCTT	NA	False	NA	NA	False	AAGAAA	-19	NA	29683327	29688924	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_29683654_29684684_29684752_29687006_29687232_29688473
transcript_50392.nnic	chr7	-	529	6	NIC	ENSMUSG00000053985.11	novel	3411	5	NA	NA	-3	-1255	combination_of_known_splicesites	FALSE	canonical	3	10	junction_3	3.65513337649941	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTCTGGTCTTAGTGATG	NA	False	NA	NA	False	ATTAAA	-15	NA	29750808	29738732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_29738842_29742954_29743082_29744144_29744234_29745163_29745265_29749864_29749929_29750769
transcript_50393.known	chr7	-	2835	5	FSM	ENSMUSG00000053985.11	ENSMUST00000207072.2	2835	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	6.81909084849293	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCGAGGAAATGACTTCTTC	NA	False	NA	NA	False	ATTAAA	-18	NA	29750798	29736315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_29738842_29742954_29743082_29744144_29744234_29749864_29749929_29750769
transcript_50394.known	chr7	-	2374	9	FSM	ENSMUSG00000058447.9	ENSMUST00000182746.2	2374	9	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_6	43.1955943934101	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTCCACTGTGTCCCAG	9890	False	NA	NA	False	ATTAAA	-18	NA	29789835	29755458	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29771453_29771565_29780515_29780643_29786524_29786585_29789712
transcript_50396.known	chr7	-	2181	7	FSM	ENSMUSG00000098022.8	ENSMUST00000080834.15	2181	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_6	14.682756326158	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGTTCCACTGTGTCC	NA	False	NA	NA	False	ATTAAA	-15	NA	29772325	29755461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29771453_29771565_29772205
transcript_50397.nnic	chr7	-	2184	7	NIC	ENSMUSG00000058447.9	novel	2374	9	NA	NA	-88	-3	combination_of_known_splicesites	FALSE	canonical	2	5	junction_4	48.1756047070391	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGTTCCACTGTGTCC	9952	False	NA	NA	False	ATTAAA	-15	NA	29789923	29755461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29780515_29780643_29786524_29786585_29789712
transcript_50399.nnic	chr7	-	2087	6	NIC	ENSMUSG00000098022.8	novel	2181	7	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	3	9	junction_5	15.0332963783729	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGTTCCACTGTGTCC	NA	False	NA	NA	False	ATTAAA	-15	NA	29772342	29755461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_29756945_29761653_29761744_29765665_29765793_29767489_29767576_29769409_29769574_29772205
transcript_5040.known	chr10	+	1411	7	FSM	ENSMUSG00000054452.11	ENSMUST00000002518.9	1411	7	0	0	0	0	multi-exon	FALSE	canonical	3	2772	junction_6	274.064925397858	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCACTGTGTCCCTGCTTCT	57	False	NA	14	True	AATAAA	-16	NA	81395327	81402196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_81395503_81397052_81397151_81399928_81399993_81400506_81400552_81400681_81400745_81401125_81401201_81401305
transcript_50403.known	chr7	-	1709	4	FSM	ENSMUSG00000078768.3	ENSMUST00000088785.6	1709	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	16.2685791225499	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATCTGTGTGGCAGTGTAA	9923	False	NA	2	True	AAAACA	-22	NA	29789952	29776761	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_29778044_29780515_29780643_29786524_29786585_29789712
transcript_50404.known	chr7	+	3604	3	FSM	ENSMUSG00000049421.14	ENSMUST00000108200.2	3604	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	44	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGATCCTTTGTTGTT	NA	False	NA	5	True	NA	NA	NA	29794609	29807039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29794637_29798952_29799148_29803657
transcript_50411.known	chr7	+	2117	5	FSM	ENSMUSG00000074220.11	ENSMUST00000098596.11	2117	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	7.82224392358101	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTGAAAATGAAGGCTT	5259	False	NA	NA	False	NA	NA	NA	29821366	29834375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29821502_29825192_29825267_29830125_29830253_29830956_29831050_29832687
transcript_50414.known	chr7	-	2029	2	FSM	ENSMUSG00000037029.9	ENSMUST00000062181.9	2029	2	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGCAGAAATAAAGAAATGC	NA	False	NA	NA	False	AGTAAA	-25	NA	29869152	29860693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_29862654_29869083
transcript_50417.known	chr7	+	393	4	FSM	ENSMUSG00000074218.4	ENSMUST00000098594.4	393	4	0	0	0	0	multi-exon	FALSE	canonical	3	920	junction_1	139.802241279125	387	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGCTCCAGCCTGTGTGT	5674	False	NA	24	True	AATAAA	-25	NA	29883568	29885455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29883671_29884509_29884597_29884699_29884785_29885336
transcript_50418.known	chr7	+	485	4	FSM	ENSMUSG00000074218.4	ENSMUST00000208441.2	485	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	502.814964861716	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGGTGTCTACGCAGTGGA	5724	False	NA	72	True	NA	NA	NA	29883618	29885503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29883765_29884509_29884597_29884699_29884785_29885336
transcript_50420.known	chr7	-	1600	12	FSM	ENSMUSG00000001794.14	ENSMUST00000001845.13	1600	12	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_11	486.143841584714	491	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGAGTAACTTGGTTATTTT	8309	False	NA	-8	True	NA	NA	NA	29898236	29886366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430_29894590_29898182
transcript_50421.known	chr7	-	1192	10	FSM	ENSMUSG00000001794.14	ENSMUST00000108196.8	1192	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_9	490.288577155219	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGGACTCTGAGTGCTGA	NA	False	NA	-28	True	AATAAA	-21	NA	29892531	29886414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29892454
transcript_50422.nnic	chr7	-	1218	10	NNC	ENSMUSG00000001794.14	novel	1192	10	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_9	479.120258622219	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCGGACTCTGAGTGCTGA	NA	False	NA	-28	True	AATAAA	-21	NA	29892571	29886414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29892468
transcript_50423.known	chr7	-	1157	10	FSM	ENSMUSG00000001794.14	ENSMUST00000129761.8	1157	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_9	497.427331996628	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACAGCTCACTATGGAGCCA	NA	False	NA	NA	False	NA	NA	NA	29893206	29886907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29892671
transcript_50429.known	chr7	-	1241	9	FSM	ENSMUSG00000001794.14	ENSMUST00000207082.2	1241	9	0	0	0	0	multi-exon	FALSE	canonical	3	1474	junction_7	82.1492544092763	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTGGTTATTTTTTTAAT	NA	False	NA	-2	True	NA	NA	NA	29892397	29886360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291
transcript_50430.known	chr7	-	1429	11	FSM	ENSMUSG00000001794.14	ENSMUST00000126116.3	1429	11	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_10	279.009032111866	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGTAACTTGGTTATTT	NA	False	NA	-9	True	NA	NA	NA	29894473	29886367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_29886959_29887095_29887155_29889476_29889594_29889903_29889983_29890083_29890153_29891586_29891652_29891744_29891803_29891927_29892018_29892291_29892326_29893302_29893527_29894430
transcript_50431.known	chr7	+	1106	2	FSM	ENSMUSG00000097817.3	ENSMUST00000181153.2	1106	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGCTGAGTGTGCACCT	NA	False	NA	NA	False	NA	NA	NA	29898054	29900314	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29898448_29899601
transcript_50437.known	chr7	-	1416	6	FSM	ENSMUSG00000006095.13	ENSMUST00000006254.6	1416	6	0	0	0	0	multi-exon	FALSE	canonical	3	839	junction_4	26.4529771481397	716	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGCAAGTCTCTTGATTCC	NA	False	NA	-5	True	NA	NA	NA	29931697	29923555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_29923773_29923897_29923971_29926268_29926461_29927028_29927126_29930550_29930695_29931004
transcript_5044.known	chr10	-	1961	14	FSM	ENSMUSG00000034758.13	ENSMUST00000142948.8	1961	14	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_8	19.8357158000858	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTGTCCTTTACCCAG	NA	False	NA	-14	True	NA	NA	NA	81436709	81426737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431210_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
transcript_50442.known	chr7	+	819	6	FSM	ENSMUSG00000019738.16	ENSMUST00000019882.16	819	6	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_5	44.9239357136037	816	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTCCCGTGTTTATTTC	NA	False	NA	18	True	AATAAA	-18	NA	29931372	29932815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29931830_29931906_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
transcript_50443.known	chr7	+	508	5	FSM	ENSMUSG00000019738.16	ENSMUST00000108192.2	508	5	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_4	46.0672063403024	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTAGTGTTTCCCGTGTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29931756	29932811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29931962_29932174_29932249_29932331_29932407_29932491_29932544_29932709
transcript_50444.known	chr7	+	488	6	FSM	ENSMUSG00000019738.16	ENSMUST00000108193.2	488	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	479.289724488226	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTAGTGTTTCCCGTGTTT	NA	False	NA	13	True	AATAAA	-13	NA	29931756	29932810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29931830_29931906_29931962_29932116_29932249_29932331_29932407_29932491_29932544_29932709
transcript_50445.known	chr7	+	451	4	FSM	ENSMUSG00000019738.16	ENSMUST00000150841.2	451	4	0	0	0	0	multi-exon	FALSE	canonical	3	1146	junction_3	51.8609251320834	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGTGTTTCCCGTGTTTAT	NA	False	NA	15	True	AATAAA	-15	NA	29932027	29932812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29932249_29932331_29932407_29932491_29932544_29932709
transcript_50447.nic	chr7	-	2610	13	ISM	ENSMUSG00000037020.17	ENSMUST00000108190.8	4742	33	-3	14915	-3	-5231	5prime_fragment	TRUE	canonical	1	41	junction_2	40.4621736934634	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAACTAAGGTGGA	NA	False	NA	NA	False	AATGAA	-33	NA	29979847	29954477	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_29955356_29957480_29957573_29960712_29960892_29962036_29962175_29964506_29964697_29967206_29967368_29969573_29969757_29970103_29970242_29971031_29971203_29971751_29971810_29973372_29973436_29974526_29974619_29979580
transcript_50448.known	chr7	+	1340	1	FSM	ENSMUSG00000013928.14	ENSMUST00000208866.2	1340	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATTAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	29979980	29981320	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_29980000_29981300
transcript_50452.nic	chr7	+	1018	7	NIC	ENSMUSG00000042831.14	novel	982	7	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	165.266451526013	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	9	True	AATAAA	-16	NA	30008190	30013729	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30011930_30012133_30013343
transcript_50453.nnic	chr7	+	973	7	NNC	ENSMUSG00000042831.14	novel	982	7	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_5	171.158471079354	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	9	True	AATAAA	-16	NA	30008177	30013729	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30011988_30012133_30013343
transcript_50454.known	chr7	+	982	7	FSM	ENSMUSG00000042831.14	ENSMUST00000060834.12	982	7	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_5	88.8144132446981	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCGTTTTGGATTTTTTTTT	NA	False	NA	9	True	AATAAA	-16	NA	30008141	30013729	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30011814_30012015_30012133_30013343
transcript_50459.known	chr7	+	1112	6	FSM	ENSMUSG00000042831.14	ENSMUST00000132193.8	1112	6	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_1	28.3125413906982	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCGTTTTGGATTTTTTTT	NA	False	NA	8	True	AATAAA	-15	NA	30008212	30013728	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30011264_30011326_30011661_30012133_30013343
transcript_5046.known	chr10	-	2015	14	FSM	ENSMUSG00000034758.13	ENSMUST00000072020.9	2015	14	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_10	15.2183321404185	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGATTTGTCCTTTACCCA	NA	False	NA	-15	True	NA	NA	NA	81436734	81426738	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81431390_81431678_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
transcript_50468.known	chr7	+	427	4	FSM	ENSMUSG00000042831.14	ENSMUST00000139121.8	427	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	198.031983948721	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGCTTGTG	NA	False	NA	NA	False	AATAAA	-39	NA	30008237	30010475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30008260_30008905_30008985_30009410_30009480_30010218
transcript_5047.nic	chr10	-	2313	13	NIC	ENSMUSG00000034758.13	novel	2015	14	NA	NA	-8	0	intron_retention	FALSE	canonical	3	36	junction_9	15.8348683466442	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTGTCCTTTACCCAG	NA	False	NA	-14	True	NA	NA	NA	81436742	81426737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81432090_81434444_81434491_81434910_81434973_81435868_81435950_81436631
transcript_50473.known	chr7	+	1355	8	FSM	ENSMUSG00000019737.15	ENSMUST00000054594.15	1355	8	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_4	40.5593543401494	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGAGAATATCAGTACT	NA	False	NA	11	True	ATTAAA	-18	NA	30014240	30018471	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30016267_30016517_30017392_30017468_30018097_30018157_30018248
transcript_50476.nic	chr7	+	1299	8	NIC	ENSMUSG00000019737.15	novel	1355	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_2	69.7438461918516	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTCTGAGAATATCAGTA	NA	False	NA	9	True	ATTAAA	-16	NA	30014229	30018469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_30014512_30014686_30014826_30015719_30015799_30015997_30016193_30016267_30016517_30017392_30017468_30018097_30018157_30018248
transcript_50478.nic	chr7	+	2240	7	NIC	ENSMUSG00000019737.15	novel	1355	8	NA	NA	-2	0	intron_retention	FALSE	canonical	3	130	junction_4	40.3460723683924	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTCTGAGAATATCAGTA	NA	False	NA	9	True	ATTAAA	-16	NA	30014229	30018469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30016267_30017468_30018097_30018157_30018248
transcript_50479.known	chr7	+	1006	7	FSM	ENSMUSG00000019737.15	ENSMUST00000176304.8	1006	7	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	73.2385751423994	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTCTGAGAATATCAGTACT	NA	False	NA	11	True	ATTAAA	-18	NA	30014340	30018471	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30016193_30017392_30017468_30018097_30018157_30018248
transcript_50483.nic	chr7	+	2315	6	NIC	ENSMUSG00000019737.15	novel	1006	7	NA	NA	-2	0	intron_retention	FALSE	canonical	3	156	junction_2	32.932658562588	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATGTCTGAGAATATCAGTA	NA	False	NA	9	True	ATTAAA	-16	NA	30014229	30018469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_30014512_30014686_30014826_30015654_30015799_30015997_30017468_30018097_30018157_30018248
transcript_50486.known	chr7	+	2014	12	FSM	ENSMUSG00000036931.16	ENSMUST00000108176.9	2014	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	5.20965410250706	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGTGTGGTGTCATTAAA	NA	False	NA	16	True	ATTAAA	-16	NA	30121156	30128171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30121260_30122827_30122929_30123059_30123121_30123664_30123877_30124646_30124835_30124926_30125033_30125133_30125281_30125394_30125447_30125540_30125690_30126492_30126610_30126850_30127016_30127558
transcript_50489.nic	chr7	-	1359	9	ISM	ENSMUSG00000006651.9	ENSMUST00000208792.2	2472	16	5036	-6	-21	0	3prime_fragment	FALSE	canonical	3	360	junction_6	42.8711732986164	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCGTGTTTCTGTTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	30139878	30134406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30135603_30135628_30136211_30136320_30137602_30137703_30139359_30139489_30139568
transcript_5049.nic	chr10	-	1815	11	NIC	ENSMUSG00000034758.13	novel	1855	11	NA	NA	-19	0	combination_of_known_junctions	TRUE	canonical	3	25	junction_10	15.7445228571716	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTGTCCTTTACCCAG	NA	False	NA	-14	True	NA	NA	NA	81433220	81426737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431240_81431313_81431390_81431678_81432090_81433129
transcript_50490.nic	chr7	-	1148	8	ISM	ENSMUSG00000006651.9	ENSMUST00000208792.2	2472	16	5327	-6	270	0	intron_retention	FALSE	canonical	3	360	junction_6	45.5407420193553	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCGTGTTTCTGTTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	30139587	30134406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30135603_30135628_30136211_30136320_30137602_30137703_30139359
transcript_50492.nic	chr7	-	1015	6	ISM	ENSMUSG00000006651.9	ENSMUST00000208792.2	2472	16	8400	-6	-86	0	3prime_fragment	FALSE	canonical	3	430	junction_4	31.3496411462715	75	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCGTGTTTCTGTTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	30136514	30134406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135469_30135603_30135628_30136211
transcript_50493.nic	chr7	-	1150	5	NIC	ENSMUSG00000006651.9	novel	2343	17	NA	NA	-86	0	intron_retention	FALSE	canonical	3	435	junction_4	29.8024747294583	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCCGTGTTTCTGTTGGA	NA	False	NA	-2	True	AATAAA	-20	NA	30136514	30134406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_30134817_30134900_30135045_30135170_30135234_30135397_30135628_30136211
transcript_50499.known	chr7	+	4608	30	FSM	ENSMUSG00000006649.18	ENSMUST00000006825.9	4608	30	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	25.8897782592191	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTTTAAAAAATTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	30159149	30186648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30159669_30159748_30159965_30160038_30160162_30160328_30160458_30160940_30161023_30161398_30161503_30162026_30162155_30162239_30162412_30162576_30162735_30162936_30163082_30163202_30163328_30164890_30165078_30165176_30165307_30165433_30165607_30166644_30166786_30166865_30167007_30167327_30167450_30170014_30170187_30170272_30170430_30170516_30170669_30173701_30173814_30173895_30174078_30177283_30177341_30180805_30180926_30181066_30181092_30181165_30181242_30181401_30181496_30181889_30182006_30186009_30186175_30186263
transcript_505.nnic	chr1	+	2329	8	NNC	ENSMUSG00000004768.15	novel	4322	8	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_1	40.1512446753471	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTGCTTTTCCTTTCTTT	NA	False	NA	8	True	TATAAA	-18	NA	33758962	33779792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_33759102_33760688_33760781_33762866_33763087_33764014_33764101_33773782_33773940_33775880_33775964_33777368_33777462_33778333
transcript_5050.known	chr10	-	1972	11	FSM	ENSMUSG00000034758.13	ENSMUST00000137631.8	1972	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	26.8551671005786	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGAGATTTGTCCTTTACC	NA	False	NA	-17	True	NA	NA	NA	81433179	81426740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81426974_81427093_81427171_81427719_81427874_81428546_81428689_81429828_81430077_81430160_81430420_81431041_81431080_81431156_81431210_81431313_81431390_81431678_81432321_81433129
transcript_50501.known	chr7	-	397	1	FSM	ENSMUSG00000109509.2	ENSMUST00000208689.2	397	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	130	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATTTTGGCTGATTTTT	9635	False	NA	-41	True	AAGAAA	-4	NA	30184522	30184125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30184100_30184500
transcript_50502.known	chr7	-	2465	12	FSM	ENSMUSG00000036864.17	ENSMUST00000215288.2	2465	12	0	0	0	0	multi-exon	TRUE	canonical	3	27	junction_11	10.5595517059866	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTCCAGTTTACTGTT	NA	False	NA	-6	True	AATAAA	-16	NA	30251692	30238558	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30239008_30239173_30239256_30239343_30240263_30240345_30240522_30242911_30243040_30243115_30243199_30245549_30245651_30245727_30245853_30248465_30248634_30249031_30249129_30250182_30250260_30251632
transcript_50503.nic	chr7	-	2455	11	NIC	ENSMUSG00000036864.17	novel	2465	12	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_10	7.82304288624318	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTCCAGTTTACTGTT	NA	False	NA	-6	True	AATAAA	-16	NA	30251759	30238558	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_30239008_30239173_30239256_30239343_30240263_30240345_30240522_30242911_30243040_30243115_30243199_30245549_30245651_30245727_30245853_30248465_30248634_30249031_30249129_30251632
transcript_50508.known	chr7	-	998	9	FSM	ENSMUSG00000036845.13	ENSMUST00000043975.11	998	9	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_2	22.8363744933385	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATCTCAAGTGCATTTA	4885	False	NA	-6	True	NA	NA	NA	30259071	30254865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257384_30258866
transcript_50509.known	chr7	-	1312	9	FSM	ENSMUSG00000036845.13	ENSMUST00000108164.8	1312	9	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_8	74.6976196073208	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTGACAAATCTCAAGTGCA	4693	False	NA	-10	True	NA	NA	NA	30259263	30254869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30255034_30255112_30255187_30255273_30255415_30256282_30256450_30256524_30256611_30256689_30256720_30257050_30257102_30257307_30257510_30258866
transcript_5051.known	chr10	-	1667	9	FSM	ENSMUSG00000034748.17	ENSMUST00000119324.8	1667	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	91.439102002371	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTACATTTATGTATT	9709	False	NA	-9	True	AATAAA	-27	NA	81463154	81457618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81457913_81458241_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81462725
transcript_5052.nic	chr10	-	1348	9	NIC	ENSMUSG00000034748.17	novel	1667	9	NA	NA	-15	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_1	72.0017360901805	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTTACATTTATGTATT	9874	False	NA	-9	True	AATAAA	-27	NA	81463415	81457618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_81457913_81458241_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81463305
transcript_50523.known	chr7	+	1363	3	FSM	ENSMUSG00000036854.15	ENSMUST00000044048.8	1363	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	10.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCCTTATGTCTGGGCCAG	NA	False	NA	12	True	AATAAA	-20	NA	30252692	30254868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30252958_30253686_30253810_30253893
transcript_50524.known	chr7	+	1298	3	FSM	ENSMUSG00000036854.15	ENSMUST00000123355.8	1298	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	8.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAACTGCCTTATGTCTGGG	NA	False	NA	8	True	AATAAA	-16	NA	30251948	30254864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30252153_30253686_30253810_30253893
transcript_50525.known	chr7	+	3007	10	FSM	ENSMUSG00000109378.2	ENSMUST00000167042.8	3007	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_8	228.074549215821	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTATCTGCCTGTCCTCATT	NA	False	NA	NA	False	AATAAA	-16	NA	30262768	30267383	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519_30265807_30266173_30266926_30267005
transcript_50527.known	chr7	+	583	8	FSM	ENSMUSG00000078765.12	ENSMUST00000163330.3	583	8	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	197.894529732277	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCCGAGAAAGGAACCGACG	NA	False	NA	NA	False	NA	NA	NA	30262731	30264550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30262775_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
transcript_50528.nic	chr7	+	903	8	NIC	ENSMUSG00000078765.12	novel	884	8	NA	NA	-53	0	combination_of_known_junctions	FALSE	canonical	3	39	junction_1	193.245851659676	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTCTGTGGTTTCCTTC	NA	False	NA	32	True	AATAAA	-20	NA	30262672	30264786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_30262775_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
transcript_50530.known	chr7	+	835	8	FSM	ENSMUSG00000078765.12	ENSMUST00000166510.8	835	8	0	0	0	0	multi-exon	FALSE	canonical	1	16	junction_4	198.242173070398	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTCAATCAAGGTCTGT	NA	False	NA	22	True	AATAAA	-10	NA	30262750	30264776	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263527_30263627_30263727_30263898_30264033_30264127_30264224_30264519
transcript_50531.known	chr7	+	860	8	FSM	ENSMUSG00000078765.12	ENSMUST00000167361.8	860	8	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	185.966751472034	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTCTGTGGTTTCCTTC	NA	False	NA	32	True	AATAAA	-20	NA	30262774	30264786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30262834_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
transcript_50534.nic	chr7	+	871	8	NIC	ENSMUSG00000078765.12	novel	884	8	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	74	junction_1	181.681713163321	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTCTGTGGTTTCCTTC	NA	False	NA	32	True	AATAAA	-20	NA	30262729	30264786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264127_30264224_30264519
transcript_50540.known	chr7	+	781	7	FSM	ENSMUSG00000078765.12	ENSMUST00000163654.8	781	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_6	203.636454387606	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGGTCTGTGGTTTCCTTCC	NA	False	NA	33	True	AATAAA	-21	NA	30262749	30264787	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30263898_30264033_30264519
transcript_50542.known	chr7	+	564	7	FSM	ENSMUSG00000078765.12	ENSMUST00000171850.8	564	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	219.58932629393	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGGGTGCCCTTGCTCTCC	NA	False	NA	NA	False	NA	NA	NA	30262780	30264604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506_30263557_30263898_30264033_30264127_30264224_30264519
transcript_50547.known	chr7	+	399	6	FSM	ENSMUSG00000078765.12	ENSMUST00000167202.8	399	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_5	293.022592985592	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGAGACGGGTGCCCTT	NA	False	NA	NA	False	NA	NA	NA	30262791	30264597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30262834_30262981_30263045_30263354_30263422_30263506_30263557_30263627_30263727_30264519
transcript_50548.known	chr7	+	656	5	FSM	ENSMUSG00000078765.12	ENSMUST00000169911.8	656	5	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	238.867117871004	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGGTAGTGTAAAAGTAGG	NA	False	NA	NA	False	NA	NA	NA	30262754	30264033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30262825_30262981_30263045_30263354_30263422_30263506_30263557_30263627
transcript_50549.known	chr7	+	629	4	FSM	ENSMUSG00000078765.12	ENSMUST00000169071.8	629	4	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_1	109.985857676744	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGTAGCGGAACTCAATAAC	NA	False	NA	NA	False	NA	NA	NA	30262770	30263926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30262825_30262956_30263045_30263354_30263422_30263506
transcript_50550.nic	chr7	-	657	4	NIC	ENSMUSG00000036835.8	novel	708	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	381.68660792156	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGAGTTCTTGGGATCTT	1290	False	NA	-5	True	AATAAA	-17	NA	30262666	30261289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_30261560_30261748_30261854_30262220_30262313_30262476
transcript_50551.known	chr7	-	708	4	FSM	ENSMUSG00000036835.8	ENSMUST00000043898.8	708	4	0	0	0	0	multi-exon	FALSE	canonical	3	560	junction_3	125.517595048131	720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGAGTTCTTGGGATCTT	1290	False	NA	-5	True	AATAAA	-17	NA	30262666	30261289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30261560_30261748_30261854_30262220_30262364_30262476
transcript_50552.known	chr7	-	488	4	FSM	ENSMUSG00000036835.8	ENSMUST00000208628.2	488	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	378.867611002401	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCTGGGCACTCCCTAAC	904	False	NA	NA	False	NA	NA	NA	30263052	30261438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30261560_30261748_30261854_30262220_30262364_30262933
transcript_50554.known	chr7	-	1775	6	FSM	ENSMUSG00000006310.11	ENSMUST00000108151.3	1775	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_5	31.6771210813104	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30292367	30289105	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290481_30291391_30292336
transcript_50555.nnic	chr7	-	1885	6	NIC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_4	21.6277599394852	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30298345	30289105	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290481_30291391_30298204
transcript_50556.nnic	chr7	-	1803	6	NNC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	-3905	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	30.7076537690524	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30302239	30289105	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290481_30291391_30302180
transcript_50558.nnic	chr7	-	1647	6	NNC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	-11	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_4	30.1038203555628	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30298345	30289105	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30290719_30291391_30298204
transcript_5056.known	chr10	-	1891	8	FSM	ENSMUSG00000034748.17	ENSMUST00000042923.9	1891	8	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_1	20.6723713873254	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTGTTACATTTATGTA	9658	False	NA	-11	True	AATAAA	-25	NA	81463631	81457620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_81458514_81458582_81458707_81459825_81459907_81459980_81460077_81460890_81460951_81461549_81461733_81462323_81462452_81463305
transcript_50560.nic	chr7	-	976	5	NIC	ENSMUSG00000006310.11	novel	1775	6	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_4	27.8960122598195	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACGAGTCCAGACTTTTCC	NA	False	NA	0	True	AATAAA	-20	NA	30298345	30289105	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_30289633_30289780_30289946_30290057_30290127_30290220_30290295_30298204
transcript_50565.nnic	chr7	-	1337	7	NNC	ENSMUSG00000006313.6	novel	1421	8	NA	NA	2773	0	at_least_one_novel_splicesite	FALSE	canonical	2	8	junction_6	11.4661337085446	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGCAGAGGAGCTTGTT	4680	False	NA	-8	True	AATAAA	-10	NA	30309499	30302516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_30303068_30303196_30303281_30304485_30304666_30306299_30306408_30306555_30306631_30309038_30309240_30309361
transcript_50571.nic	chr7	-	946	4	ISM	ENSMUSG00000006313.6	ENSMUST00000006476.6	1421	8	5842	0	5842	0	3prime_fragment	FALSE	canonical	3	18	junction_3	10.6144555520604	18	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGAGCAGAGGAGCTTGTT	7749	False	NA	-8	True	AATAAA	-10	NA	30306430	30302516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_30303068_30303196_30303281_30304485_30304666_30306299
transcript_50573.known	chr7	-	618	4	FSM	ENSMUSG00000036751.8	ENSMUST00000075738.6	618	4	0	0	0	0	multi-exon	FALSE	canonical	3	5624	junction_1	329.368419183679	2286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTATTATTGTGTGTGTG	NA	False	NA	NA	False	AATGAA	-20	NA	30325576	30316285	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30316588_30322839_30322941_30323924_30324039_30325475
transcript_50576.known	chr7	-	369	3	FSM	ENSMUSG00000036751.8	ENSMUST00000207851.2	369	3	0	0	0	0	multi-exon	FALSE	canonical	3	5660	junction_2	340	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGAGGACCAGCCATGGAAT	NA	False	NA	NA	False	NA	NA	NA	30325539	30322749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30322941_30323924_30324039_30325475
transcript_50577.known	chr7	-	1048	6	FSM	ENSMUSG00000006311.9	ENSMUST00000108147.3	1048	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	22.0544780033444	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCGAACCTGCGTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	30335277	30333040	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30333260_30333413_30333527_30334037_30334515_30334732_30334793_30334999_30335087_30335185
transcript_50580.known	chr7	-	2187	19	FSM	ENSMUSG00000078762.11	ENSMUST00000019697.9	2187	19	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_13	34.9573373142001	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAAGCACTGCCCAGTTTT	NA	False	NA	-9	True	AATAAA	-10	NA	30364419	30353140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30353481_30353594_30353728_30356373_30356504_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358091_30358277_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
transcript_50587.known	chr7	-	1784	10	FSM	ENSMUSG00000036733.17	ENSMUST00000042726.14	1784	10	0	0	0	0	multi-exon	FALSE	canonical	3	640	junction_5	133.345925331332	337	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTGACTGGACTTAGAAA	3611	False	NA	-14	True	AATAAA	-16	NA	30349742	30340425	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345268_30345343_30345410_30346984_30347060_30347155_30347241_30349008_30349145_30349362
transcript_50589.known	chr7	-	1526	9	FSM	ENSMUSG00000036733.17	ENSMUST00000108141.2	1526	9	0	0	0	0	multi-exon	TRUE	canonical	3	345	junction_5	209.790818435889	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGACTGGACTTAGAAACT	3784	False	NA	-12	True	AATAAA	-18	NA	30349569	30340423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30340646_30340732_30340928_30343923_30344042_30344250_30344584_30345091_30345247_30346984_30347060_30347155_30347241_30349008_30349145_30349362
transcript_5059.known	chr10	+	829	5	FSM	ENSMUSG00000054708.18	ENSMUST00000132458.2	829	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	34.9070193514141	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGGGCAGGAATACCCAGT	NA	False	NA	NA	False	NA	NA	NA	81479636	81483308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_81479728_81480809_81480978_81482138_81482268_81482626_81482693_81482933
transcript_50595.known	chr7	-	2070	19	FSM	ENSMUSG00000078762.11	ENSMUST00000132862.8	2070	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	57.7150567683839	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTGCCCAGTTTTATCAA	NA	False	NA	-4	True	AATAAA	-15	NA	30364358	30353135	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30353481_30353594_30353728_30356373_30356443_30356586_30356699_30357023_30357170_30357262_30357344_30357927_30358091_30358277_30358409_30358487_30358552_30358713_30358839_30358964_30359023_30359518_30359602_30359683_30359754_30361053_30361214_30361293_30361400_30362360_30362386_30362519_30362553_30362647_30362711_30364255
transcript_50596.known	chr7	-	699	2	FSM	ENSMUSG00000049761.7	ENSMUST00000051495.7	699	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCCTGTGTCTGGGTGTA	NA	False	NA	NA	False	AATAAA	-21	NA	30371030	30370146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30370606_30370790
transcript_50598.known	chr7	-	870	7	FSM	ENSMUSG00000006315.10	ENSMUST00000006478.10	870	7	0	0	0	0	multi-exon	FALSE	canonical	3	739	junction_6	21.1850314032233	596	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTTTTGTTATGTCCATCT	9257	False	NA	-16	True	AGTAAA	-14	NA	30428965	30427129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428142_30428626_30428697_30428768
transcript_50599.known	chr7	-	774	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207779.2	774	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	293.234831946457	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTATGTCCATCTCTCT	9290	False	NA	-12	True	AGTAAA	-18	NA	30428932	30427125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427923_30427994_30428081_30428142_30428626_30428697_30428768
transcript_5060.known	chr10	+	3561	20	FSM	ENSMUSG00000054708.18	ENSMUST00000119336.8	3561	20	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	28.3239080515564	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGTCGCAAGAGTTGTGT	2902	False	NA	NA	False	AATAAA	-29	NA	81464468	81483444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_81464475_81465382_81465583_81470698_81470830_81470903_81470993_81471521_81471587_81472202_81472261_81473902_81473974_81474104_81474212_81474394_81474583_81475140_81475179_81475689_81475771_81475861_81475970_81476601_81476647_81476725_81476825_81477809_81477883_81478134_81478254_81478350_81479728_81482138_81482268_81482626_81482693_81482933
transcript_50600.known	chr7	-	875	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207296.2	875	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	290.731118618791	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTGTTATGTCCATCTCT	9275	False	NA	-14	True	AGTAAA	-16	NA	30428947	30427127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30427329_30427411_30427555_30427629_30427715_30427856_30427994_30428081_30428142_30428626_30428697_30428768
transcript_5061.known	chr10	+	2384	4	FSM	ENSMUSG00000096795.5	ENSMUST00000200889.4	2384	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	8.5764535535124	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATACTGCCATCCATT	NA	False	NA	NA	False	AATAAA	-23	NA	81540658	81557810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_81540735_81554752_81554880_81555078_81555140_81555690
transcript_50613.known	chr7	-	835	7	FSM	ENSMUSG00000006315.10	ENSMUST00000207263.2	835	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_5	291.92945304569	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTTCAGTGAAGTAAACAGT	9288	False	NA	-45	True	NA	NA	NA	30428934	30427158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30427329_30427411_30427534_30427629_30427715_30427856_30427994_30428081_30428167_30428626_30428697_30428768
transcript_50616.known	chr7	+	470	6	FSM	ENSMUSG00000074199.8	ENSMUST00000098559.3	470	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_5	10.9105453575887	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTTTCTGTCCTTATC	NA	False	NA	23	True	AATAAA	-28	NA	30487329	30490522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30487448_30488929_30488969_30489137_30489180_30489336_30489382_30489992_30490041_30490344
transcript_50617.known	chr7	+	403	6	FSM	ENSMUSG00000074199.8	ENSMUST00000190990.7	403	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	24.1694021440333	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTGGCTCCTGAATCTGTG	NA	False	NA	9	True	AATAAA	-14	NA	30487329	30490508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30487448_30488929_30488969_30489137_30489180_30489336_30489382_30489992_30490041_30490397
transcript_50618.known	chr7	+	345	5	FSM	ENSMUSG00000074199.8	ENSMUST00000189673.7	345	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	35.6370593624109	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTGTTTTCCACTCAAGT	NA	False	NA	-7	True	NA	NA	NA	30487329	30490492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_30487448_30488929_30488969_30489336_30489382_30489992_30490041_30490397
transcript_5062.known	chr10	+	2360	4	FSM	ENSMUSG00000061371.8	ENSMUST00000210325.2	2360	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	1.24721912892465	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACAGTTTTATCTATATTA	NA	False	NA	NA	False	AATAAA	-11	NA	81883956	81897415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_81884064_81894203_81894331_81894516_81894578_81895350
transcript_50621.known	chr7	-	1625	2	FSM	ENSMUSG00000019429.8	ENSMUST00000094583.2	1625	2	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAAGAAAATAATGTTTC	7666	False	NA	NA	False	AATAAA	-13	NA	30555603	30553754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30555330_30555553
transcript_50622.nic	chr7	-	1172	4	ISM	ENSMUSG00000030577.15	ENSMUST00000189718.7	3672	13	10536	-2	5506	0	3prime_fragment	FALSE	canonical	2	5	junction_1	0.471404520791032	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTTGTATTGGTGATTG	NA	False	NA	NA	False	ATTAAA	-23	NA	30567338	30565251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_30566088_30566442_30566528_30566886_30567006_30567206
transcript_50624.known	chr7	-	2419	10	FSM	ENSMUSG00000058239.14	ENSMUST00000058860.14	2419	10	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_9	26.650458036969	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGTCTTTGGCCTTACCA	8764	False	NA	NA	False	NA	NA	NA	30656228	30644672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30646095_30646175_30646305_30646389_30646485_30654168_30654228_30654530_30654619_30654714_30654866_30655224_30655426_30655573_30655693_30655806_30655854_30656120
transcript_50625.known	chr7	-	2021	10	FSM	ENSMUSG00000001247.17	ENSMUST00000205961.2	2021	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_7	47.1029867208513	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATCTAAGCCTCTTGTTT	NA	False	NA	-7	True	AATAAA	-13	NA	30672747	30657203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30662235_30662293_30665393_30665514_30671292_30671638_30672504
transcript_50627.known	chr7	-	849	9	FSM	ENSMUSG00000058239.14	ENSMUST00000108119.10	849	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	40.847085269331	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCGCCGGCTCACCCTTC	8801	False	NA	NA	False	NA	NA	NA	30656191	30646004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30646095_30646175_30646305_30646389_30646485_30654168_30654228_30654530_30654619_30654714_30654866_30655573_30655693_30655806_30655854_30656120
transcript_50628.known	chr7	-	2071	9	FSM	ENSMUSG00000001247.17	ENSMUST00000108116.10	2071	9	0	0	0	0	multi-exon	TRUE	canonical	3	93	junction_6	34.291945118351	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTAAGCCTCTTGTTTTG	NA	False	NA	-5	True	AATAAA	-15	NA	30672852	30657201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30657327_30657413_30658046_30658174_30658307_30658399_30658460_30658577_30658740_30661522_30661670_30665393_30665514_30671292_30671638_30672504
transcript_5063.known	chr10	+	2284	3	FSM	ENSMUSG00000061371.8	ENSMUST00000209622.2	2284	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	19	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTTTTATCTATATTATCAAA	NA	False	NA	NA	False	AATAAA	-16	NA	81883976	81897420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_81884064_81894203_81894331_81895350
transcript_50635.nnic	chr7	-	461	6	NNC	ENSMUSG00000009687.15	novel	500	7	NA	NA	833	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	34.6490981123607	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGCCTCTGTCTTCTGTG	7693	False	NA	-7	True	GATAAA	-19	NA	30736530	30732154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_30732306_30732397_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30736452
transcript_50636.nnic	chr7	-	631	5	NNC	ENSMUSG00000009687.15	novel	593	5	NA	NA	872	0	intron_retention	FALSE	canonical	3	10	junction_4	35.9513560244951	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGCCTCTGTCTTCTGTG	7732	False	NA	-7	True	GATAAA	-19	NA	30736491	30732154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30736335
transcript_50637.nnic	chr7	-	521	5	NNC	ENSMUSG00000009687.15	novel	593	5	NA	NA	882	0	intron_retention	FALSE	canonical	3	10	junction_4	35.9513560244951	11	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGCCTCTGTCTTCTGTG	7742	False	NA	-7	True	GATAAA	-19	NA	30736481	30732154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30736435
transcript_50638.nnic	chr7	-	553	5	NNC	ENSMUSG00000009687.15	novel	593	5	NA	NA	833	0	intron_retention	FALSE	canonical	3	42	junction_4	22.1923410211721	25	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGGCCTCTGTCTTCTGTG	7693	False	NA	-7	True	GATAAA	-19	NA	30736530	30732154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_30732444_30734633_30734709_30734810_30734841_30735860_30735942_30736452
transcript_50639.known	chr7	-	469	6	FSM	ENSMUSG00000057092.13	ENSMUST00000169313.8	469	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.489897948556636	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGGTGCCAGAGACTCTG	NA	False	NA	NA	False	TATAAA	-17	NA	30771714	30769959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30770146_30770276_30770315_30770586_30770624_30770716_30770792_30771499_30771524_30771605
transcript_5064.known	chr10	+	2726	4	FSM	ENSMUSG00000112160.2	ENSMUST00000220287.2	2726	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	4.78423336480244	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTATATACTGCCATCCAT	NA	False	NA	NA	False	AATAAA	-19	NA	81919186	81947050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_81919247_81943643_81943771_81943972_81944034_81944572
transcript_50640.known	chr7	-	1830	14	FSM	ENSMUSG00000001249.15	ENSMUST00000108102.9	1830	14	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_11	2.8658363092611	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCTGCGTCTACAAACGGA	9112	False	NA	NA	False	AATAAA	-20	NA	30814715	30798149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30798499_30798639_30798805_30798930_30799074_30799230_30799327_30801902_30802094_30802185_30802352_30802578_30802620_30802725_30802849_30802924_30803055_30808389_30808432_30808515_30808618_30810138_30810199_30814102_30814170_30814560
transcript_50644.known	chr7	-	2735	19	FSM	ENSMUSG00000001248.16	ENSMUST00000186634.7	2735	19	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	68.1079390234699	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	5735	False	NA	-1	True	AATAAA	-15	NA	30850458	30829551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30834950_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30850320
transcript_50645.known	chr7	-	2713	19	FSM	ENSMUSG00000001248.16	ENSMUST00000001280.14	2713	19	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_6	41.078853711152	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGCTTGTACCTGTGGGG	5686	False	NA	-1	True	AATAAA	-15	NA	30850507	30829551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_30830010_30831965_30832087_30832182_30832291_30833415_30833504_30833582_30833757_30833838_30833943_30835021_30835165_30835247_30835367_30837538_30837683_30838176_30838376_30838821_30838973_30839181_30839295_30840554_30840636_30841792_30841889_30841975_30842080_30842228_30842314_30842971_30842993_30843081_30843299_30850320
transcript_50651.known	chr7	-	2579	17	FSM	ENSMUSG00000052997.16	ENSMUST00000102746.11	2579	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	386.788858543974	1084	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTGCCCTAGTGGGTTT	NA	False	NA	0	True	AATAAA	-27	NA	33868000	33840112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_33840892_33842162_33842300_33843914_33844021_33845629_33845727_33846944_33847101_33850212_33850326_33850419_33850514_33853908_33854070_33855309_33855410_33856667_33856790_33857403_33857472_33858242_33858365_33860961_33861063_33862578_33862644_33863809_33863881_33864826_33864911_33867797
transcript_50669.known	chr7	-	1295	7	FSM	ENSMUSG00000002635.12	ENSMUST00000002710.10	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_2	61.3994209165599	758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTGTTTGGTTTATTGTTCA	5732	False	NA	-6	True	TATAAA	-15	NA	33896086	33883923	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_33884237_33885718_33885868_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
transcript_5067.known	chr10	-	2035	4	FSM	ENSMUSG00000062931.16	ENSMUST00000041264.15	2035	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	52.6898683071254	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTATTTATGTTGTCATTA	NA	False	NA	NA	False	NA	NA	NA	82077107	82060683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_82062428_82063364_82063426_82063632_82063760_82077004
transcript_50673.known	chr7	-	959	6	FSM	ENSMUSG00000002635.12	ENSMUST00000148381.3	959	6	0	0	0	0	multi-exon	TRUE	canonical	3	50	junction_1	296.710903068964	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATATATGTGTTTACCTTAT	5785	False	NA	NA	False	ATTAAA	-20	NA	33896033	33884057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_33884237_33888773_33888882_33892160_33892532_33895490_33895552_33895696_33895864_33895960
transcript_50678.known	chr7	-	2884	18	FSM	ENSMUSG00000036427.6	ENSMUST00000038027.6	2884	18	0	0	0	0	multi-exon	FALSE	canonical	3	1600	junction_15	166.521152162862	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTAGGGTTTTATTGCT	NA	False	NA	NA	False	AATAAA	-14	NA	33929761	33900754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_33901975_33902061_33902129_33902239_33902316_33903453_33903583_33904992_33905070_33905230_33905361_33907030_33907184_33907281_33907326_33907674_33907736_33915380_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
transcript_50679.known	chr7	-	1601	9	FSM	ENSMUSG00000036427.6	ENSMUST00000206603.2	1601	9	0	0	0	0	multi-exon	FALSE	canonical	3	1600	junction_6	111.622060431619	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAAAAAAAAGAAAAACCC	NA	False	NA	NA	False	NA	NA	NA	33929688	33914633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_33915435_33917722_33917768_33918455_33918528_33920038_33920186_33920267_33920352_33926542_33926663_33928352_33928422_33928707_33928799_33929516
transcript_5068.known	chr10	-	2124	4	FSM	ENSMUSG00000062931.16	ENSMUST00000156218.2	2124	4	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_1	59.275252471462	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATGTTATTTATGTTGTC	NA	False	NA	NA	False	NA	NA	NA	82077114	82060687	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_82062428_82063278_82063426_82063632_82063760_82077004
transcript_50682.known	chr7	-	2055	2	FSM	ENSMUSG00000066571.14	ENSMUST00000206018.2	2055	2	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AACAAAAAAAAAGATTTATT	9809	False	NA	NA	False	NA	NA	NA	34012975	33983382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_33985379_34012916
transcript_50683.known	chr7	-	2944	11	FSM	ENSMUSG00000066568.13	ENSMUST00000085585.12	2944	11	0	0	0	0	multi-exon	FALSE	canonical	3	572	junction_4	54.3963234051714	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTTAACTATTTTGGTT	NA	False	NA	-11	True	AATAAA	-33	NA	34089112	34044070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_34045384_34047350_34047408_34050710_34050943_34052814_34052987_34053089_34053273_34056858_34056922_34057190_34057368_34065039_34065163_34070479_34070610_34074653_34074818_34088782
transcript_50685.known	chr7	-	2372	4	FSM	ENSMUSG00000060402.9	ENSMUST00000078686.8	2372	4	0	0	0	0	multi-exon	TRUE	canonical	1	5	junction_3	4.02768199119819	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTCCAGCTTGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	34512111	34373892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_34375670_34376059_34376098_34447486_34447703_34511770
transcript_50686.known	chr7	+	1881	15	FSM	ENSMUSG00000063931.15	ENSMUST00000075068.14	1881	15	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	31.3925930429327	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTTCTGCCCATCTTCCTC	NA	False	NA	14	True	AATAAA	-19	NA	34611803	34744133	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_34611880_34620753_34620938_34623805_34623934_34634106_34634171_34642063_34642112_34645011_34645074_34653982_34654028_34668929_34669006_34671081_34671129_34720389_34720459_34721117_34721196_34730767_34730917_34740095_34740281_34743114_34743307_34743655
transcript_5069.known	chr10	+	3330	4	FSM	ENSMUSG00000073427.5	ENSMUST00000210381.2	3330	4	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_3	14.0554457615387	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGATGTTTATGTTGTC	NA	False	NA	3	True	AATAAA	-15	NA	82190149	82215470	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_82190216_82204404_82204532_82204731_82204793_82212394
transcript_50691.known	chr7	-	4709	2	FSM	ENSMUSG00000056216.10	ENSMUST00000130491.3	4709	2	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGTTCTTATCACGTGTCT	NA	False	NA	NA	False	AATAAA	-18	NA	34755998	34745846	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_34750358_34755800
transcript_50692.known	chr7	-	3065	20	FSM	ENSMUSG00000063808.15	ENSMUST00000079693.12	3065	20	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_17	13.3084023611853	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCTTCTTGATTTCTTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	35017865	34975960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_34976237_34980756_34980906_34982995_34983094_34984140_34984249_34986547_34986762_34987941_34988106_34988464_34988602_34991150_34991279_34993079_34993259_34994679_34994977_34996908_34997114_34998645_34998726_35001002_35001151_35002653_35002897_35005354_35005414_35006613_35006712_35007603_35007765_35008725_35008812_35009864_35010000_35017765
transcript_50693.known	chr7	-	2584	18	FSM	ENSMUSG00000063808.15	ENSMUST00000131143.2	2584	18	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_15	38.6016834529004	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAGACACAAGAGCAA	NA	False	NA	9	True	AAAAAG	-18	NA	35017865	34983043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_34983094_34984140_34984249_34986547_34986762_34987941_34988106_34988464_34988602_34991150_34991279_34993079_34993259_34994679_34994977_34996908_34997114_34998645_34998726_35001002_35001151_35002653_35002897_35005354_35005414_35006613_35006712_35007603_35007757_35008725_35008812_35009864_35010000_35017765
transcript_50696.known	chr7	+	3046	16	FSM	ENSMUSG00000030494.14	ENSMUST00000085556.4	3046	16	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_15	29.2524642836577	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTTCTTTTTTCTTTTG	NA	False	NA	22	True	AATAAA	-22	NA	35033754	35091710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_35033837_35053156_35053273_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179_35090736_35091033
transcript_50698.known	chr7	+	3508	15	FSM	ENSMUSG00000030494.14	ENSMUST00000032705.13	3508	15	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_1	11.3992928531124	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTCTTTTGCTTT	NA	False	NA	26	True	AATAAA	-26	NA	35033594	35091714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_35033837_35053156_35053273_35060404_35060534_35063041_35063118_35070133_35070212_35070539_35070665_35071729_35071897_35075584_35075773_35076398_35076556_35078989_35079110_35080761_35080957_35083393_35083471_35084062_35084210_35084751_35084908_35090179
transcript_507.nnic	chr1	-	1807	4	NNC	ENSMUSG00000042215.9	novel	1860	3	NA	NA	9	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	21.2968437932844	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTAGCATTGGCCATTAT	NA	False	NA	-5	True	NA	NA	NA	33796867	33784564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_33785227_33785270_33786098_33787297_33787408_33796659
transcript_50703.known	chr7	-	831	5	FSM	ENSMUSG00000030493.14	ENSMUST00000154597.2	831	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	59.3316947339278	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTCTGGGCAGCCACC	NA	False	NA	NA	False	NA	NA	NA	35096133	35092120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_35092517_35094399_35094553_35094661_35094802_35095637_35095757_35096110
transcript_50704.nnic	chr7	-	1422	5	NNC	ENSMUSG00000030493.14	novel	831	5	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_4	61.4913611818766	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAGAAAAATTA	NA	False	NA	NA	False	AATAAA	-4	NA	35096249	35091729	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_35092517_35094399_35094553_35094661_35094802_35095637_35095841_35096110
transcript_50705.known	chr7	-	1857	4	FSM	ENSMUSG00000030493.14	ENSMUST00000032704.12	1857	4	0	0	0	0	multi-exon	TRUE	canonical	3	143	junction_2	4.92160768674447	164	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAAGATCCACAGGCTATAT	NA	False	NA	NA	False	AATAGA	-24	NA	35096261	35091576	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_35092517_35094399_35094553_35094661_35094802_35095637
transcript_50707.known	chr7	-	1690	3	FSM	ENSMUSG00000030493.14	ENSMUST00000141001.2	1690	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	3.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAGAAAAAAGAAAAATTA	NA	False	NA	NA	False	AATAAA	-4	NA	35096138	35091729	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_35092517_35094399_35094802_35095637
transcript_50709.known	chr7	+	2610	19	FSM	ENSMUSG00000023072.15	ENSMUST00000079414.12	2610	19	0	0	0	0	multi-exon	FALSE	canonical	2	65	junction_12	24.7032386540712	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTGCATGTTTATTTCAG	NA	False	NA	10	True	AATAAA	-20	NA	35096479	35138114	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122829_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35131942_35132033_35134898_35135069_35137752
transcript_50711.nic	chr7	+	2531	17	ISM	ENSMUSG00000023072.15	ENSMUST00000141704.8	2825	20	16	8234	-4	-2121	5prime_fragment	FALSE	canonical	2	50	junction_16	33.5018073206506	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTGATATTGTCTGTACTCA	NA	False	NA	11	True	AATAAA	-17	NA	35096475	35129878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_35096632_35097414_35097522_35102434_35102594_35105042_35105221_35109005_35109118_35113568_35113598_35115841_35115885_35117066_35117286_35117643_35117787_35119671_35119723_35120299_35120384_35122724_35122829_35124081_35124198_35127024_35127206_35127624_35127793_35128581_35128724_35129339
transcript_50714.known	chr7	+	1869	15	FSM	ENSMUSG00000030492.17	ENSMUST00000118383.8	1869	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2.56347977784662	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCTGTGAGTTAAGAGTTT	NA	False	NA	NA	False	NA	NA	NA	35148220	35165461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_35148246_35148488_35148572_35148773_35148880_35149174_35149312_35151793_35151942_35152818_35153062_35153478_35153605_35153982_35154083_35155001_35155047_35155538_35155663_35156432_35156537_35159271_35159369_35160199_35160350_35163020_35163196_35165255
transcript_50721.known	chr7	-	1620	12	FSM	ENSMUSG00000030491.17	ENSMUST00000032701.14	1620	12	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_6	48.0311538018523	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAAATTCTCTTAAAATA	NA	False	NA	-13	True	AATAAA	-33	NA	35237170	35193036	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
transcript_50725.nnic	chr7	-	1686	12	NNC	ENSMUSG00000030491.17	novel	1620	12	NA	NA	1	11	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	137.361139499598	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGCAGAATTCTTGCTTC	NA	False	NA	-31	True	AATAAA	-15	NA	35237169	35193054	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_35193363_35193610_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
transcript_50726.known	chr7	-	1412	11	FSM	ENSMUSG00000030491.17	ENSMUST00000205407.2	1412	11	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_10	140.166365437647	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATTCTCTTAAAATATTT	NA	False	NA	-10	True	AATAAA	-36	NA	35237118	35193033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_35193363_35193695_35193757_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35236938
transcript_50729.nnic	chr7	-	2028	11	Fusion	ENSMUSG00000100068.2_ENSMUSG00000030491.17	novel	769	6	NA	NA	1	105	multi-exon	FALSE	canonical	3	19	junction_1	140.882362274346	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCCAAGTTGCTTTTGGT	NA	False	NA	NA	False	NA	NA	NA	35237169	35196774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr7_-_35197571_35200814_35200896_35203578_35203656_35204400_35204496_35208200_35208391_35210639_35210726_35211356_35211413_35221344_35221465_35223362_35223500_35228537_35228697_35236938
transcript_50735.known	chr7	-	733	3	FSM	ENSMUSG00000034875.6	ENSMUST00000142930.2	733	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	165.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCACTTGCTCCCTGGTTGG	NA	False	NA	NA	False	NA	NA	NA	35254619	35246945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_35247549_35250878_35250968_35254578
transcript_50736.known	chr7	-	2298	3	FSM	ENSMUSG00000034875.6	ENSMUST00000040962.6	2298	3	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	2	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTATTTTTTATTCTACT	NA	False	NA	2	True	ATTAAA	-29	NA	35255729	35246609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_35247549_35250878_35251087_35254578
transcript_50741.known	chr7	+	4284	29	FSM	ENSMUSG00000034867.17	ENSMUST00000040844.16	4284	29	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_17	26.9819242214835	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCGTGCCATTTTTGTG	NA	False	NA	23	True	AGTAAA	-15	NA	35285668	35338651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745_35307879_35311887_35311981_35313879_35314008_35314452_35314536_35315272_35315389_35316271_35316365_35318739_35318938_35319782_35319843_35319967_35320088_35321729_35321775_35325071_35325192_35326828_35327027_35327851_35327972_35330567_35330730_35332361_35332474_35335655_35335735_35335954_35336028_35337438
transcript_50742.known	chr7	+	1926	12	FSM	ENSMUSG00000034867.17	ENSMUST00000186245.7	1926	12	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_4	23.6388110621019	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGTTCAGCCTGGGCTA	NA	False	NA	NA	False	NA	NA	NA	35285674	35308539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_35285795_35291176_35291308_35299739_35299851_35300914_35301072_35301852_35302008_35302979_35303040_35303123_35303178_35303260_35303327_35303637_35303715_35305207_35305330_35306525_35306605_35307745
transcript_50747.known	chr7	-	684	6	FSM	ENSMUSG00000030417.16	ENSMUST00000118501.8	684	6	0	0	0	0	multi-exon	FALSE	canonical	3	1740	junction_2	86.0883267348135	866	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAGATCTGCATTTTG	NA	False	NA	NA	False	NA	NA	NA	35346946	35341406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_35341611_35342039_35342112_35343048_35343141_35343775_35343838_35345568_35345607_35346730
transcript_50748.known	chr7	-	6693	7	FSM	ENSMUSG00000044452.11	ENSMUST00000061586.11	6693	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_5	5.55777733351102	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTCTAAGTTTCCTTA	NA	False	NA	NA	False	AATAAA	-21	NA	35502414	35471767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_35475753_35475862_35475998_35487142_35487258_35491072_35491188_35492947_35495044_35500862_35500954_35502258
transcript_50749.known	chr7	-	944	6	FSM	ENSMUSG00000044452.11	ENSMUST00000187282.3	944	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	23.3957261054236	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATGCCAACTAGCTGGGAG	NA	False	NA	NA	False	NA	NA	NA	35502392	35475398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_35475753_35475862_35475998_35487142_35487258_35491072_35491188_35500862_35500954_35502258
transcript_50750.known	chr7	+	555	1	FSM	ENSMUSG00000066543.9	ENSMUST00000119541.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8796	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAAGGC	NA	False	NA	NA	False	AAGAAA	-34	NA	35817698	35818253	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_35817700_35818300
transcript_50752.known	chr7	-	3441	11	FSM	ENSMUSG00000030421.10	ENSMUST00000085513.6	3441	11	0	0	0	0	multi-exon	FALSE	canonical	3	853	junction_5	45.4049556766659	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGAGCCTGCTTTATCTA	NA	False	NA	-5	True	ATTAAA	-24	NA	37718967	37659416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_37661123_37661890_37662135_37662817_37662958_37664655_37665005_37666745_37666915_37668804_37668863_37669030_37669123_37681035_37681172_37682294_37682374_37696111_37696147_37718534
transcript_50754.known	chr7	-	2000	12	FSM	ENSMUSG00000002068.17	ENSMUST00000108023.10	2000	12	0	0	0	0	multi-exon	FALSE	canonical	2	563	junction_4	98.4049652714874	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTTCTTAACTCTGT	NA	False	NA	-12	True	AATAAA	-19	NA	37806959	37797408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_37798063_37798416_37798575_37798671_37798784_37798892_37799028_37799213_37799310_37799979_37800127_37802210_37802347_37802470_37802620_37805703_37805773_37806020_37806109_37806211_37806255_37806746
transcript_50756.known	chr7	+	3282	3	FSM	ENSMUSG00000054676.18	ENSMUST00000178876.10	3282	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	1.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCACTCTCTGTGTATTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	37883077	37896992	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_37883325_37888030_37888202_37894128
transcript_50757.known	chr7	+	2325	3	FSM	ENSMUSG00000054676.18	ENSMUST00000179525.10	2325	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	23	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTCATATCTTTCTGT	NA	False	NA	9	True	TTTAAA	-5	NA	37882685	37896016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_37882952_37888030_37888202_37894128
transcript_50759.nic	chr7	-	1316	8	NIC	ENSMUSG00000030423.8	novel	2113	7	NA	NA	24	-828	combination_of_known_junctions	TRUE	canonical	2	9	junction_5	113.432709532289	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCATAAATGGCTTCAAAT	NA	False	NA	-13	True	AATAAA	-11	NA	37970823	37962247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_37962734_37963751_37963854_37965323_37965386_37965550_37965629_37966792_37967020_37968028_37968084_37968325_37968379_37970570
transcript_50760.known	chr7	-	2113	7	FSM	ENSMUSG00000030423.8	ENSMUST00000032585.8	2113	7	0	0	0	0	multi-exon	FALSE	canonical	3	243	junction_2	18.1567251085284	367	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGCCAGCCTCCAATTAAA	NA	False	NA	NA	False	NA	NA	NA	37970847	37961419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_37962734_37963751_37963854_37965323_37965386_37965550_37965629_37966792_37967020_37968325_37968379_37970570
transcript_50765.nic	chr7	-	1426	6	NIC	ENSMUSG00000030423.8	novel	2113	7	NA	NA	24	-828	intron_retention	FALSE	canonical	3	243	junction_2	19.7929280299808	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGCATAAATGGCTTCAAAT	NA	False	NA	-13	True	AATAAA	-11	NA	37970823	37962247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_37962734_37963751_37963854_37965323_37965629_37966792_37967020_37968325_37968379_37970570
transcript_5077.known	chr10	-	716	3	FSM	ENSMUSG00000063320.12	ENSMUST00000079648.12	716	3	0	0	0	0	multi-exon	FALSE	canonical	3	302	junction_2	73.5	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTACTATACATTCTTGG	NA	False	NA	0	True	NA	NA	NA	82459030	82455684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_82456052_82458541_82458659_82458798
transcript_50773.nnic	chr7	+	802	4	NNC	ENSMUSG00000100490.2	novel	1290	3	NA	NA	-2077	-2152	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	0.942809041582063	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTTTGCTTGGTGAAAT	NA	False	NA	NA	False	AATAAA	-23	NA	39136784	39146073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_39136985_39138848_39138976_39143154_39143248_39145691
transcript_50774.known	chr7	+	395	1	FSM	ENSMUSG00000056836.9	ENSMUST00000154478.3	395	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	628	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ATCACATGAAAGACTAAAAA	NA	False	NA	NA	False	AATAAA	-1	NA	39840360	39840755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_39840400_39840800
transcript_50775.known	chr7	-	2071	5	FSM	ENSMUSG00000056383.11	ENSMUST00000205338.2	2071	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	16.2845785944863	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGAG	NA	False	NA	NA	False	NA	NA	NA	41042803	41023213	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_41024799_41025914_41025973_41026169_41026297_41037531_41037680_41042650
transcript_50776.known	chr7	-	3411	4	FSM	ENSMUSG00000074166.8	ENSMUST00000098509.5	3411	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	6.97614984548545	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATTTGCTTTTTTTCTGTC	NA	False	NA	0	True	AATAAA	-21	NA	41149314	41128297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_41130924_41131989_41132051_41132256_41132384_41148717
transcript_50777.known	chr7	-	1337	2	FSM	ENSMUSG00000074166.8	ENSMUST00000205995.2	1337	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTGATGGTGCTGTTCT	NA	False	NA	NA	False	NA	NA	NA	41148832	41139270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_41140493_41148717
transcript_50778.known	chr7	-	637	2	FSM	ENSMUSG00000074166.8	ENSMUST00000205634.2	637	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGTACATCCACTGCTCA	NA	False	NA	NA	False	NA	NA	NA	41148851	41140383	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_41140887_41148717
transcript_5078.known	chr10	-	406	3	FSM	ENSMUSG00000063320.12	ENSMUST00000183363.2	406	3	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	131	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTAGGGGGCTCAATGGC	NA	False	NA	0	True	AGTAAA	-20	NA	82459024	82455859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_82456052_82458541_82458659_82458927
transcript_50781.known	chr7	+	4004	6	FSM	ENSMUSG00000091474.3	ENSMUST00000163475.3	4004	6	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	46.5403051128804	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGGGTAATGAATTTCT	NA	False	NA	45	True	AATAAA	-27	NA	41248684	41277957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_41248825_41261099_41261350_41261794_41261922_41262579_41262676_41274146_41274257_41274676
transcript_50783.known	chr7	+	1169	5	FSM	ENSMUSG00000074165.11	ENSMUST00000140964.8	1169	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	14.5150783669948	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAATGTGGTAAGTCCTT	NA	False	NA	NA	False	NA	NA	NA	41282981	41298421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_41283119_41284103_41284135_41296906_41297042_41297242_41297304_41297616
transcript_50788.known	chr7	-	4069	7	FSM	ENSMUSG00000092416.3	ENSMUST00000174407.3	4069	7	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_4	65.4285021140549	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTACTTACTGCTGTCTT	NA	False	NA	-15	True	AATAAA	-15	NA	42155150	42122809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139432_42139701_42150781_42150850_42155033
transcript_5079.known	chr10	-	469	3	FSM	ENSMUSG00000063320.12	ENSMUST00000185168.8	469	3	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	174.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGTTCATAACCATCTATG	NA	False	NA	84	True	NA	NA	NA	82459062	82455775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_82456052_82458541_82458659_82458986
transcript_50791.nnic	chr7	-	3117	7	NNC	ENSMUSG00000092416.3	novel	4069	7	NA	NA	-30	-966	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_4	78.7541886011292	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGCCTTGGTCATGTTA	NA	False	NA	-19	True	NA	NA	NA	42155194	42123775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_42126108_42126528_42126639_42137893_42137975_42138858_42138986_42139462_42139701_42150781_42150850_42155033
transcript_50799.nnic	chr7	+	344	3	Antisense	novelGene_ENSMUSG00000108491.2_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	12	junction_1	5.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCGGCTGCAGACTGTTA	NA	False	NA	NA	False	NA	NA	NA	42155259	42158298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr7_+_42155413_42157017_42157122_42158211
transcript_508.known	chr1	-	1860	3	FSM	ENSMUSG00000042215.9	ENSMUST00000044691.9	1860	3	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	4.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTAGCATTGGCCATTAT	NA	False	NA	-5	True	NA	NA	NA	33796876	33784564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_33786098_33787297_33787408_33796659
transcript_50803.known	chr7	-	3148	4	FSM	ENSMUSG00000069727.6	ENSMUST00000107992.2	3148	4	0	0	0	0	multi-exon	FALSE	canonical	3	231	junction_3	55.1784982277215	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCGTGTCCTGTGTTTA	NA	False	NA	NA	False	NA	NA	NA	42342142	42309528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_42312421_42314181_42314243_42314441_42314569_42342074
transcript_50805.nnic	chr7	-	3070	3	NIC	ENSMUSG00000069727.6	novel	3148	4	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_2	158	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGCGTGTCCTGTGTTTA	NA	False	NA	NA	False	NA	NA	NA	42342191	42309528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_42312421_42314181_42314243_42342074
transcript_50806.known	chr7	-	4073	4	FSM	ENSMUSG00000092225.2	ENSMUST00000174558.2	4073	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_3	34.9888871246603	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATTTTCATTAGTAATTT	NA	False	NA	-14	True	AATAAA	-14	NA	42516658	42466252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_42470028_42471782_42471844_42472041_42472168_42516547
transcript_50809.known	chr7	+	578	5	FSM	ENSMUSG00000064194.11	ENSMUST00000200973.4	578	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	196.935268552893	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAACCCAGCTATCTTCGAA	NA	False	NA	NA	False	NA	NA	NA	42827046	42838926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_42827128_42836593_42836721_42836916_42836978_42838466_42838575_42838725
transcript_50811.nnic	chr7	+	1956	5	NNC	ENSMUSG00000074887.5	novel	1492	5	NA	NA	-40	447	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	106.302634021928	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTGGGGACACTCTTTGTA	9958	False	NA	12	True	AATAAA	-14	NA	42863422	42876713	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_42863572_42870265_42870307_42872998_42873126_42873324_42873386_42875135
transcript_50812.known	chr7	+	1492	5	FSM	ENSMUSG00000074887.5	ENSMUST00000205748.2	1492	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	99.780697031039	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTCAGCTCAAAGTCTTC	9998	False	NA	NA	False	NA	NA	NA	42863462	42876266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_42863572_42870265_42870330_42872998_42873126_42873324_42873386_42875135
transcript_50817.known	chr7	+	1428	4	FSM	ENSMUSG00000074887.5	ENSMUST00000206405.2	1428	4	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_3	24.5356882927706	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCTCAGCTCAAAGTCTTC	9998	False	NA	NA	False	NA	NA	NA	42863462	42876266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_42863572_42872998_42873126_42873324_42873386_42875135
transcript_50820.nic	chr7	-	4266	5	NIC	ENSMUSG00000012640.17	novel	4363	6	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	30.589009464185	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCACTGTTCATATTGCTTT	NA	False	NA	0	True	AATAAA	-16	NA	42962696	42945946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_42949601_42950593_42950690_42951034_42951162_42960454_42960675_42962527
transcript_50822.known	chr7	+	558	2	FSM	ENSMUSG00000118553.2	ENSMUST00000239023.2	558	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCCTGAAGAGCATCCAGT	NA	False	NA	NA	False	NA	NA	NA	43077109	43078256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43077145_43077733
transcript_50823.known	chr7	+	893	6	FSM	ENSMUSG00000004610.5	ENSMUST00000004729.5	893	6	0	0	0	0	multi-exon	FALSE	canonical	3	1745	junction_1	117.194539121923	1886	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTTGGATGTCCTTGTTT	1908	False	NA	52	True	AATAAA	-35	NA	43093506	43107224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941_43104005_43105902_43106062_43106993
transcript_50824.known	chr7	+	701	6	FSM	ENSMUSG00000004610.5	ENSMUST00000206411.2	701	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	783.507855735984	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCACTGCCTCTTTCCTCAT	1975	False	NA	33	True	AATAAA	-16	NA	43093573	43107205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43093629_43101764_43101924_43102222_43102382_43103941_43104005_43105902_43106062_43107099
transcript_50825.known	chr7	+	4494	4	FSM	ENSMUSG00000030469.11	ENSMUST00000058104.8	4494	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	1.24721912892465	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATCATTGTTTTCTCATCC	7267	False	NA	NA	False	NA	NA	NA	43229033	43242659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43229191_43233491_43233721_43235777_43235905_43238678
transcript_50829.nic	chr7	+	2440	5	NIC	ENSMUSG00000055102.16	novel	2362	5	NA	NA	-48	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	25.6843824142221	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGCTTATTTTAAATACAC	2788	False	NA	7	True	AATAAA	-15	NA	43256544	43267640	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_43256742_43259209_43259403_43261406_43261534_43261970_43262064_43265810
transcript_5083.known	chr10	-	586	2	FSM	ENSMUSG00000063320.12	ENSMUST00000176200.8	586	2	0	0	0	0	multi-exon	FALSE	canonical	3	449	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTACTATACATTCTTGG	NA	False	NA	0	True	NA	NA	NA	82458760	82455684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_82456052_82458541
transcript_50830.nic	chr7	+	2509	5	NIC	ENSMUSG00000055102.16	novel	2362	5	NA	NA	-48	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	25.6843824142221	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCACATTCATCCATTGC	2788	False	NA	7	True	AATAAA	-21	NA	43256544	43267709	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_43256742_43259209_43259403_43261406_43261534_43261970_43262064_43265810
transcript_50831.known	chr7	+	2362	5	FSM	ENSMUSG00000055102.16	ENSMUST00000032661.14	2362	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	20.1416856295594	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCCACATTCATCCATTGC	2892	False	NA	7	True	AATAAA	-21	NA	43256648	43267709	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43256699_43259209_43259403_43261406_43261534_43261970_43262064_43265810
transcript_50837.known	chr7	+	2156	4	FSM	ENSMUSG00000055102.16	ENSMUST00000120935.2	2156	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	36.4630711207319	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTGCTTATTTTAAATACAC	2836	False	NA	7	True	AATAAA	-15	NA	43256592	43267640	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43256699_43261406_43261534_43261970_43262064_43265810
transcript_50838.known	chr7	+	2475	3	FSM	ENSMUSG00000038888.9	ENSMUST00000038332.9	2475	3	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_1	1	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATGTTTTTGGTCTGGTGTT	NA	False	NA	8	True	NA	NA	NA	43321439	43327722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43321500_43324527_43325071_43325850
transcript_5084.known	chr10	+	2959	10	FSM	ENSMUSG00000034674.19	ENSMUST00000092266.11	2959	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	369.308195427446	334	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTTAGTATACAGGTTT	NA	False	NA	NA	False	AATAAA	-14	NA	82465661	82486158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_82465774_82474534_82474711_82477149_82477392_82477854_82477925_82480003_82480140_82480284_82480368_82480448_82480544_82483055_82483228_82483786_82483913_82484411
transcript_50841.known	chr7	+	1809	6	FSM	ENSMUSG00000054046.8	ENSMUST00000066834.8	1809	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	24.8161237907938	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTGTTTTGTTTTGT	NA	False	NA	17	True	CATAAA	-21	NA	43361990	43376958	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43362129_43363215_43363307_43370390_43370581_43370691_43370961_43373178_43373316_43375974
transcript_50842.nnic	chr7	+	1022	6	NNC	ENSMUSG00000054046.8	novel	1809	6	NA	NA	-93	-780	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	29.0406611494986	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43361897	43376178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_43362129_43363215_43363307_43370390_43370581_43370791_43370961_43373178_43373316_43375974
transcript_50844.nnic	chr7	+	1089	6	NNC	ENSMUSG00000054046.8	novel	718	3	NA	NA	-335	-780	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	15.8694675399019	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43362487	43376178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_43362686_43363215_43363307_43370390_43370581_43370691_43370961_43373178_43373316_43375974
transcript_50846.nnic	chr7	+	989	6	NNC	ENSMUSG00000054046.8	novel	718	3	NA	NA	-335	-780	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_3	23.4810561943027	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43362487	43376178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_43362686_43363215_43363307_43370390_43370581_43370791_43370961_43373178_43373316_43375974
transcript_50848.nnic	chr7	+	1090	6	NNC	ENSMUSG00000054046.8	novel	718	3	NA	NA	-323	-780	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	19.3245957266899	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTCCCCTACTGTGCCTC	NA	False	NA	8	True	AATAAA	-21	NA	43362499	43376178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_43362686_43363202_43363307_43370390_43370581_43370691_43370961_43373178_43373316_43375974
transcript_5085.known	chr10	+	3502	10	FSM	ENSMUSG00000034674.19	ENSMUST00000151390.8	3502	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	366.010456573289	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGGCTAACTTGTTTCTA	NA	False	NA	NA	False	NA	NA	NA	82465692	82486633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_82465873_82474534_82474711_82477149_82477392_82477854_82477925_82480003_82480140_82480284_82480368_82480448_82480544_82483055_82483228_82483786_82483913_82484411
transcript_50853.known	chr7	+	1312	6	FSM	ENSMUSG00000067616.12	ENSMUST00000080211.12	1312	6	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_4	3.00665927567458	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCTGTTGAGTGTCAAC	NA	False	NA	NA	False	NA	NA	NA	43424027	43428687	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43424226_43425903_43425979_43426304_43426462_43426911_43427178_43427753_43427891_43428208
transcript_50856.known	chr7	+	955	5	FSM	ENSMUSG00000067616.12	ENSMUST00000206165.2	955	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	3.35410196624968	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCCAACCCCTCCAACC	NA	False	NA	NA	False	NA	NA	NA	43425752	43428377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43425979_43426304_43426462_43426911_43427178_43427753_43427891_43428208
transcript_50857.known	chr7	+	915	5	FSM	ENSMUSG00000067616.12	ENSMUST00000205415.2	915	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	3.67423461417477	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATAGTATAGGGATGCTCT	NA	False	NA	NA	False	NA	NA	NA	43425903	43428484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43425979_43426304_43426466_43426911_43427178_43427753_43427891_43428208
transcript_50858.known	chr7	+	1373	6	FSM	ENSMUSG00000030693.11	ENSMUST00000014058.11	1373	6	0	0	0	0	multi-exon	FALSE	canonical	2	31	junction_4	14.5134420452214	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCCAATGTGTGTGCCTCT	355	False	NA	9	True	ATTAAA	-16	NA	43430458	43434834	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43430571_43430922_43431050_43432159_43432344_43432880_43433156_43433739_43433874_43434293
transcript_50859.known	chr7	+	1476	5	FSM	ENSMUSG00000047884.7	ENSMUST00000005891.7	1476	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.866025403784439	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCCTGTCGCCTGTAATG	464	False	NA	NA	False	AATAAA	-15	NA	43441314	43446181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43441464_43441602_43441760_43443687_43443954_43444975_43445113_43445414
transcript_50861.known	chr7	+	1322	5	FSM	ENSMUSG00000064023.5	ENSMUST00000085461.4	1322	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	3.90512483795333	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCGACTGTGCTTTGACC	2877	False	NA	28	True	AATAAA	-18	NA	43447000	43453246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43447557_43448047_43448208_43448488_43448752_43451503_43451638_43453037
transcript_50863.nic	chr7	+	1459	6	NIC	ENSMUSG00000074155.3	novel	1239	5	NA	NA	-159	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	0.4	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATATTTCTCCTCCTGTA	NA	False	NA	NA	False	AATAAA	-18	NA	43491235	43500605	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_43491492_43491728_43491813_43494591_43494857_43496407_43496665_43496864_43496999_43500142
transcript_50864.nnic	chr7	+	1373	6	NNC	ENSMUSG00000055193.5	novel	845	5	NA	NA	-2102	447	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	2.5298221281347	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAAGCAGCTGGGCAG	980	False	NA	NA	False	NA	NA	NA	43581061	43589510	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_43581146_43583166_43583235_43586828_43586980_43587764_43588049_43588168_43588306_43588861
transcript_50866.known	chr7	+	855	5	FSM	ENSMUSG00000060177.7	ENSMUST00000077528.7	855	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGTTCAAGGTCTGACATT	NA	False	NA	NA	False	AATAAA	-18	NA	43762096	43766346	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43762172_43764119_43764280_43765255_43765537_43765632_43765770_43766144
transcript_50867.known	chr7	+	954	5	FSM	ENSMUSG00000063903.6	ENSMUST00000075162.5	954	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	17.0934929139717	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAAGTTCTGACATTCTC	NA	False	NA	7	True	AATAAA	-21	NA	43874783	43879042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43874949_43876944_43877105_43877951_43878239_43878334_43878472_43878837
transcript_5087.nic	chr10	+	2380	14	ISM	ENSMUSG00000020246.14	ENSMUST00000020478.14	3422	15	107	2950	-97	-1917	5prime_fragment	FALSE	canonical	3	69	junction_7	9.81666256450355	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTATATGGATTCTTCCT	NA	False	NA	17	True	AATAAA	-26	NA	82534947	82575312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_82535141_82536752_82536902_82538276_82538438_82544842_82545052_82545797_82545883_82547668_82547776_82547883_82548073_82559452_82559621_82560177_82560231_82564086_82564262_82568436_82568511_82570183_82570316_82574112_82574299_82574813
transcript_50870.nic	chr7	-	1253	5	NIC	ENSMUSG00000038782.8	novel	1166	5	NA	NA	-7	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_1	2.95803989154981	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCTCAGTATCTGACTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	43896126	43879353	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_43880066_43880266_43880340_43880749_43880897_43881779_43881981_43896006
transcript_50872.nnic	chr7	-	1176	4	NIC	ENSMUSG00000038782.8	novel	1306	5	NA	NA	-7	-1	combination_of_known_splicesites	FALSE	canonical	2	5	junction_1	1.24721912892465	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAAATTCTCAGTATCTGAC	NA	False	NA	NA	False	AATAAA	-15	NA	43896126	43879357	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_43880066_43880749_43880897_43881779_43881981_43896006
transcript_50873.known	chr7	+	988	8	FSM	ENSMUSG00000045411.17	ENSMUST00000146155.8	988	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	335.825391948779	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCTTGACCCAGAAGGGCC	NA	False	NA	NA	False	NA	NA	NA	43896210	43900498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43896248_43896674_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_50874.nic	chr7	+	2244	8	NIC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	327.388554024301	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896208	43901739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_43896248_43896661_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_50876.nic	chr7	+	2228	8	NIC	ENSMUSG00000045411.17	novel	2092	7	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	337.565594532744	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896209	43901739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_43896233_43896661_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_50877.nic	chr7	+	2214	8	NIC	ENSMUSG00000045411.17	novel	988	8	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	340.047415661344	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896210	43901739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_43896233_43896674_43896841_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_50883.known	chr7	+	2092	7	FSM	ENSMUSG00000045411.17	ENSMUST00000084937.11	2092	7	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	279.849612391291	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896210	43901739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43896248_43896661_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_50887.known	chr7	+	2131	7	FSM	ENSMUSG00000045411.17	ENSMUST00000188111.7	2131	7	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	296.487211641019	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGGTGTGCTGTTTGATTC	NA	False	NA	22	True	ATTAAA	-22	NA	43896158	43901741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43896233_43896661_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_50888.known	chr7	+	676	7	FSM	ENSMUSG00000045411.17	ENSMUST00000187524.7	676	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	348.685826433418	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCGTCAGCGTTGGGAATCC	NA	False	NA	NA	False	GGGGCT	-38	NA	43896222	43900379	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43896233_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_50892.nnic	chr7	+	2063	7	NIC	ENSMUSG00000045411.17	novel	988	8	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	349.374997515404	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGGGTGTGCTGTTTGAT	NA	False	NA	20	True	ATTAAA	-20	NA	43896210	43901739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_43896248_43897333_43897484_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_50894.known	chr7	+	1982	6	FSM	ENSMUSG00000045411.17	ENSMUST00000055858.14	1982	6	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	215.342889364845	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGTGTGCTGTTTGATTCGG	NA	False	NA	24	True	ATTAAA	-24	NA	43896145	43901743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43896248_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_50896.known	chr7	+	784	6	FSM	ENSMUSG00000045411.17	ENSMUST00000137702.8	784	6	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_1	258.311904487579	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGCCTGCTCACAGCAGCCC	NA	False	NA	NA	False	NA	NA	NA	43896151	43900566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43896233_43897675_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_50897.known	chr7	+	509	6	FSM	ENSMUSG00000045411.17	ENSMUST00000188476.7	509	6	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	295.191192280529	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACCACCATGGTGATATGTT	NA	False	NA	NA	False	NA	NA	NA	43896231	43899905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43896248_43896661_43896841_43897675_43897720_43898965_43899024_43899444_43899484_43899732
transcript_50903.known	chr7	+	3610	4	FSM	ENSMUSG00000045411.17	ENSMUST00000107949.8	3610	4	0	0	0	0	multi-exon	FALSE	canonical	3	709	junction_3	48.6095555306659	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGGGTGTGCTGTTT	NA	False	NA	17	True	ATTAAA	-17	NA	43896210	43901736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43897720_43898965_43899024_43899444_43899484_43899732
transcript_50904.known	chr7	+	2908	6	FSM	ENSMUSG00000045411.17	ENSMUST00000107948.8	2908	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	279.671664635515	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTAGGGTGTGCTGTTTG	NA	False	NA	18	True	ATTAAA	-18	NA	43896214	43901737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43896248_43896674_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_50905.known	chr7	+	3336	5	FSM	ENSMUSG00000045411.17	ENSMUST00000107950.9	3336	5	0	0	0	0	multi-exon	FALSE	canonical	3	709	junction_3	44.6933999601731	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTAGGGTGTGCTGTTT	NA	False	NA	17	True	ATTAAA	-17	NA	43896212	43901736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_43897720_43898965_43899024_43899444_43899484_43899732_43899765_43900036
transcript_50908.known	chr7	+	864	5	FSM	ENSMUSG00000038695.14	ENSMUST00000118628.8	864	5	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	14.4460202131937	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATTTGTGCCTGGGCTCA	4807	False	NA	20	True	AATAAA	-12	NA	44117468	44121072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44117615_44118230_44118394_44119835_44119962_44120536_44120732_44120838
transcript_50910.known	chr7	-	1662	8	FSM	ENSMUSG00000008140.19	ENSMUST00000118515.9	1662	8	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_1	346.110162950988	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCTGCCTTCTGTGCTTG	NA	False	NA	-1	True	ATTAAA	-31	NA	44145830	44139534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44140395_44140586_44140674_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
transcript_50920.known	chr7	-	1855	7	FSM	ENSMUSG00000008140.19	ENSMUST00000239015.2	1855	7	0	0	0	0	multi-exon	FALSE	canonical	3	638	junction_1	150.719386056782	869	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATTTCTTGGTTCATTC	NA	False	NA	27	True	NA	NA	NA	44145937	44139361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44140395_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
transcript_50923.nic	chr7	-	1895	7	NIC	ENSMUSG00000008140.19	novel	1662	8	NA	NA	4	-12	intron_retention	FALSE	canonical	3	278	junction_1	282.765509447905	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCAGCTCACTTCCTGC	NA	False	NA	-13	True	ATTAAA	-19	NA	44145883	44139546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_44140674_44141378_44141473_44141567_44141750_44141977_44142083_44142613_44142724_44144231_44144305_44145679
transcript_50932.known	chr7	-	3611	28	FSM	ENSMUSG00000038670.12	ENSMUST00000165208.4	3611	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	5.68394847207433	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTCTGTAGTTCTTGTCC	NA	False	NA	5	True	GATAAA	-37	NA	44174080	44151122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44151267_44153060_44153248_44154422_44154560_44154659_44154820_44154989_44155130_44155475_44155672_44156231_44156321_44156458_44156627_44157654_44157790_44158392_44158582_44158957_44159063_44159154_44159315_44161232_44161373_44161515_44161546_44161884_44161992_44163091_44163258_44164272_44164446_44165349_44165456_44165566_44165692_44165806_44165940_44166234_44166429_44169756_44169817_44170162_44170212_44171098_44171217_44171403_44171553_44171744_44171832_44172254_44172333_44173994
transcript_50933.known	chr7	-	3454	27	FSM	ENSMUSG00000038644.15	ENSMUST00000049343.15	3454	27	0	0	0	0	multi-exon	FALSE	canonical	3	875	junction_26	151.95728923444	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGTTGTGGTCTTTG	NA	False	NA	-2	True	AATAAA	-21	NA	44198271	44182169	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44182319_44182627_44182726_44182796_44182850_44183107_44183222_44183308_44183442_44183808_44183912_44183987_44184141_44184440_44184617_44185122_44185261_44185354_44185451_44187031_44187180_44187415_44187530_44187750_44187868_44188027_44188117_44188196_44188389_44188477_44188589_44188785_44188927_44189948_44190054_44190267_44190435_44190698_44190829_44190913_44190996_44191077_44191247_44191322_44191449_44191527_44191675_44192188_44192303_44192664_44192861_44198178
transcript_5094.known	chr10	-	2554	8	FSM	ENSMUSG00000020248.19	ENSMUST00000130911.8	2554	8	0	0	0	0	multi-exon	FALSE	canonical	3	756	junction_4	63.4932103071032	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCGCCTTGCGTGTGGGT	NA	False	NA	-4	True	AATAAA	-43	NA	82599978	82584534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_82586282_82586571_82586652_82587217_82587300_82588240_82588439_82590798_82590930_82592535_82592630_82597666_82597748_82599837
transcript_50940.known	chr7	-	1948	10	FSM	ENSMUSG00000060601.14	ENSMUST00000107910.8	1948	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	233.829683717988	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGTTTGAGTACAAGCCAT	NA	False	NA	-19	True	AATAAA	-12	NA	44203347	44199058	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202182_44203002_44203133_44203232
transcript_50941.nic	chr7	-	1957	10	NIC	ENSMUSG00000060601.14	novel	1988	10	NA	NA	2	0	combination_of_known_junctions	TRUE	canonical	3	30	junction_9	212.17137261663	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTGAGTACAAGCCATTCC	NA	False	NA	-16	True	AATAAA	-15	NA	44203370	44199055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201661_44201930_44202045_44202120_44202179_44203002_44203133_44203246
transcript_50942.known	chr7	-	1944	10	FSM	ENSMUSG00000060601.14	ENSMUST00000167197.8	1944	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	223.571073020098	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAACAAAAATAAA	NA	False	NA	-36	True	NA	NA	NA	44203347	44199075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44201670_44201930_44202045_44202120_44202182_44203002_44203133_44203228
transcript_50945.known	chr7	-	1853	9	FSM	ENSMUSG00000060601.14	ENSMUST00000123358.9	1853	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	201.405336014218	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGGCAGCCACAAGTGCCCCA	NA	False	NA	NA	False	NA	NA	NA	44203335	44199408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44199556_44199723_44199933_44200168_44200269_44200741_44200922_44201023_44201284_44201378_44202045_44202120_44202179_44203002_44203133_44203232
transcript_50946.known	chr7	+	1560	9	FSM	ENSMUSG00000002204.10	ENSMUST00000002274.10	1560	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_5	2.82842712474619	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAACTTTCCATGGAAGGAT	2542	False	NA	NA	False	ATTAAA	-18	NA	44221803	44236286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44222114_44230627_44230764_44230844_44230969_44231106_44231226_44231765_44231966_44234422_44234546_44234642_44234788_44235137_44235237_44235982
transcript_50947.known	chr7	-	1089	3	FSM	ENSMUSG00000109491.2	ENSMUST00000209101.2	1089	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAATTATTTTATGT	6652	False	NA	NA	False	NA	NA	NA	44240048	44229391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44229830_44230385_44230979_44239990
transcript_50948.nnic	chr7	-	1598	7	NNC	ENSMUSG00000030739.19	novel	6390	40	NA	NA	-50	0	at_least_one_novel_splicesite	TRUE	canonical	3	11	junction_6	26.7669987526099	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGGCTGCGTTTCTAATT	NA	False	NA	-1	True	AATAAA	-17	NA	44263599	44255226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263266
transcript_50949.known	chr7	-	1438	7	FSM	ENSMUSG00000030739.19	ENSMUST00000208044.2	1438	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_6	22.8837642591132	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATGGCTGCGTTTCTAA	NA	False	NA	-3	True	AATAAA	-15	NA	44263549	44255228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44255788_44256054_44256228_44257858_44257968_44260946_44261156_44262858_44262983_44263065_44263155_44263374
transcript_50954.known	chr7	+	704	7	FSM	ENSMUSG00000066500.6	ENSMUST00000209004.2	704	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	2.40947204913349	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTGTACATTCCCT	188	False	NA	NA	False	AATAAA	-25	NA	44358165	44369268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44358395_44358479_44358555_44359678_44359766_44359934_44359956_44362421_44362503_44364751_44364876_44369181
transcript_50955.known	chr7	+	1969	15	FSM	ENSMUSG00000002205.17	ENSMUST00000002275.15	1969	15	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	19.1081775420785	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGGAGAGTTCAGTGTTC	NA	False	NA	16	True	AATAAA	-16	NA	44397836	44426939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44398076_44401538_44401601_44403239_44403380_44407169_44407320_44409123_44409319_44410301_44410367_44412414_44412482_44413548_44413634_44414206_44414313_44416545_44416639_44417866_44418000_44418956_44419078_44420287_44420347_44424799_44424960_44426645
transcript_50958.known	chr7	-	1006	5	FSM	ENSMUSG00000048012.20	ENSMUST00000140599.9	1006	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	7.63216876123687	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCGGATCATCAGAGTCCTG	NA	False	NA	NA	False	NA	NA	NA	44397773	44383882	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44384070_44387389_44387459_44388926_44389060_44391112_44391290_44397333
transcript_50959.known	chr7	-	3624	5	FSM	ENSMUSG00000048012.20	ENSMUST00000120074.8	3624	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	25.0499500997507	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAGAAATAAAGTGTTCGC	NA	False	NA	-40	True	GATAAA	-2	NA	44397473	44380938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44384070_44387389_44387459_44388926_44389060_44391112_44391290_44397359
transcript_50961.known	chr7	-	2362	17	FSM	ENSMUSG00000038520.16	ENSMUST00000145959.8	2362	17	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_3	59.8690954813082	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCGCTGGCTGGCATCAGG	7699	False	NA	-10	True	AATAAA	-15	NA	44498503	44490455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44490845_44490966_44491054_44491406_44491524_44491609_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
transcript_50965.known	chr7	-	8750	17	FSM	ENSMUSG00000038520.16	ENSMUST00000047085.16	8750	17	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_4	26.4359485360371	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCCCATGTTAGTGCCAA	7703	False	NA	NA	False	TTTAAA	-7	NA	44498499	44484046	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44490845_44490966_44491054_44491406_44491524_44491626_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
transcript_50973.known	chr7	-	2411	16	FSM	ENSMUSG00000038520.16	ENSMUST00000139947.8	2411	16	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_3	26.7432234407148	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACCACGGTGTAGTGTTCA	7867	False	NA	NA	False	NA	NA	NA	44498335	44490324	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44490845_44490966_44491054_44491406_44491725_44492044_44492145_44492239_44492341_44492418_44492536_44492855_44492951_44493507_44493612_44493694_44493824_44494435_44494598_44494680_44494793_44495298_44495507_44496184_44496309_44497693_44497766_44497859_44497959_44498272
transcript_50978.known	chr7	+	1592	5	FSM	ENSMUSG00000011096.18	ENSMUST00000054343.15	1592	5	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	63.711753232822	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGTGTGTGAGTGTGA	1400	False	NA	19	True	ATTAAA	-24	NA	44498647	44504845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44498773_44501994_44502384_44503203_44503282_44503362_44503533_44504015
transcript_50979.known	chr7	+	1160	5	FSM	ENSMUSG00000011096.18	ENSMUST00000107882.8	1160	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	107.27622057101	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGAACAGAAAGCCTTGGCCT	1805	False	NA	NA	False	NA	NA	NA	44499052	44504160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44499431_44501994_44502384_44503203_44503282_44503362_44503533_44504015
transcript_50980.known	chr7	-	1816	3	FSM	ENSMUSG00000038539.16	ENSMUST00000047356.11	1816	3	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	35.5	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTGTCTTATCTTTGA	9686	False	NA	0	True	AATAAA	-19	NA	44466082	44461679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44462945_44464412_44464707_44465825
transcript_50981.known	chr7	+	2722	2	FSM	ENSMUSG00000109511.2	ENSMUST00000057195.17	2722	2	0	0	0	0	multi-exon	FALSE	canonical	3	986	junction_1	0	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGCTGTGAGTATGGGTAG	75	False	NA	21	True	AATAAA	-21	NA	44465511	44480236	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44465908_44477910
transcript_50982.known	chr7	+	715	2	FSM	ENSMUSG00000109511.2	ENSMUST00000208172.2	715	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCAGTGGCAGTGCATCCC	287	False	NA	NA	False	NA	NA	NA	44465723	44478465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44465884_44477910
transcript_50983.known	chr7	+	1757	5	FSM	ENSMUSG00000011096.18	ENSMUST00000107880.9	1757	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	128.154203988788	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTTGTGTGTGAGTGTGA	2183	False	NA	19	True	ATTAAA	-24	NA	44499430	44504845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44499721_44501994_44502384_44503203_44503282_44503362_44503533_44504015
transcript_50985.known	chr7	+	1770	17	FSM	ENSMUSG00000002963.18	ENSMUST00000107876.8	1770	17	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	53.8118466859297	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCCATCTTGCTGGG	9315	False	NA	15	True	AATAAA	-17	NA	44506562	44512074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44506727_44506818_44506979_44507586_44507634_44507876_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
transcript_50987.nnic	chr7	+	1505	15	NNC	ENSMUSG00000002963.18	novel	1770	17	NA	NA	-15	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	61.2335775568288	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACAGCCATCTTGCTGGG	9501	False	NA	15	True	AATAAA	-17	NA	44506748	44512074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_44506979_44508000_44508174_44509146_44509227_44509311_44509370_44509500_44509609_44509783_44509856_44510286_44510336_44510412_44510484_44510570_44510664_44510741_44510839_44510923_44510986_44511072_44511183_44511617_44511706_44511789_44511852_44511922
transcript_50988.known	chr7	-	631	3	FSM	ENSMUSG00000038502.18	ENSMUST00000208687.2	631	3	0	0	0	0	multi-exon	FALSE	canonical	3	386	junction_1	208	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCTGTCCCTCCCTGCT	NA	False	NA	-10	True	AATAAA	-13	NA	44513397	44512492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44512619_44512802_44512869_44512958
transcript_50991.known	chr7	-	2619	18	FSM	ENSMUSG00000002968.10	ENSMUST00000003049.8	2619	18	0	0	0	0	multi-exon	FALSE	canonical	3	744	junction_9	66.5493546850497	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCGGCTCCCGTGACTGACG	9929	False	NA	-6	True	AATAAA	-17	NA	44542136	44528807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44528939_44529350_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
transcript_50995.known	chr7	-	2678	17	FSM	ENSMUSG00000002968.10	ENSMUST00000208551.2	2678	17	0	0	0	0	multi-exon	FALSE	canonical	3	744	junction_8	64.3087948398195	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACAATGCCCGGCTCCCGTG	7001	False	NA	-13	True	AATAAA	-10	NA	44541790	44528814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44529529_44529675_44529895_44529990_44530063_44530346_44530536_44532182_44532291_44532391_44532450_44532522_44532609_44533542_44533672_44533986_44534181_44534256_44534345_44534503_44534635_44534762_44534926_44535207_44535329_44535595_44535695_44541206_44541332_44541522_44541569_44541654
transcript_51.known	ERCC-00150	+	727	1	FSM	ERCC-00150A	DQ883659	727	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00150_+_0_700
transcript_510.known	chr1	-	3958	15	FSM	ENSMUSG00000042197.14	ENSMUST00000019861.13	3958	15	0	0	0	0	multi-exon	FALSE	canonical	3	234	junction_7	31.7753594690564	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAAGAGGAAATTTTTTCTA	NA	False	NA	-2	True	AATAAA	-17	NA	33853608	33800625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_33801291_33804924_33804991_33808801_33808989_33809849_33809981_33811973_33812115_33815349_33816945_33818124_33818273_33818976_33819131_33821148_33821276_33822121_33822273_33822933_33823046_33825487_33825614_33844419_33844501_33852807_33852892_33853418
transcript_51000.known	chr7	-	3301	23	FSM	ENSMUSG00000060279.15	ENSMUST00000107857.11	3301	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	144.442358888666	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATATTACCCCAGCTATTGA	NA	False	NA	-14	True	AATAAA	-13	NA	44578850	44549808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44550240_44550410_44550546_44550660_44550731_44550807_44550925_44551014_44551139_44552172_44552263_44552397_44552481_44552567_44552625_44553164_44553326_44553412_44553581_44553660_44553893_44554076_44554175_44555108_44555292_44555494_44555633_44555734_44555904_44556257_44556409_44557147_44557257_44558643_44558746_44559122_44559253_44565264_44565459_44565586_44565730_44565825_44565895_44578703
transcript_51002.known	chr7	+	1698	11	FSM	ENSMUSG00000011658.17	ENSMUST00000071207.14	1698	11	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_5	12.7373466624725	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCCGGGCTCTTTGCTGTCG	NA	False	NA	26	True	AATAAA	-37	NA	44545502	44550048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44547049_44547926_44548125_44548199_44548296_44548408_44548516_44548597_44548663_44548735_44548811_44549556
transcript_51003.known	chr7	+	1453	10	FSM	ENSMUSG00000011658.17	ENSMUST00000209039.2	1453	10	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	26.1448954015034	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTCCCAGGCGCCCCCA	NA	False	NA	6	True	AATAAA	-17	NA	44545529	44550028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44545787_44545970_44546093_44546338_44546424_44546684_44546754_44546943_44547049_44548199_44548296_44548408_44548516_44548597_44548663_44548735_44548811_44549556
transcript_51005.known	chr7	-	3376	23	FSM	ENSMUSG00000060279.15	ENSMUST00000167930.8	3376	23	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	144.442358888666	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATTGACTGCCCACCCT	NA	False	NA	-3	True	AATAAA	-24	NA	44578914	44549797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44550240_44550410_44550546_44550660_44550731_44550807_44550925_44551014_44551140_44552173_44552263_44552397_44552481_44552567_44552625_44553164_44553326_44553412_44553581_44553660_44553893_44554076_44554175_44555108_44555292_44555494_44555633_44555734_44555904_44556257_44556409_44557147_44557257_44558643_44558746_44559122_44559253_44565264_44565459_44565586_44565730_44565825_44565895_44578703
transcript_51009.known	chr7	+	1843	11	FSM	ENSMUSG00000059891.15	ENSMUST00000120929.9	1843	11	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_4	4.03112887414927	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGACAACTATACTTTTT	1417	False	NA	NA	False	AATAAA	-23	NA	44592645	44607459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44592878_44593205_44593429_44600202_44600299_44600462_44600547_44601259_44601371_44601969_44602257_44603170_44603366_44603737_44603912_44605875_44606012_44607020_44607146_44607279
transcript_51010.known	chr7	-	2793	19	FSM	ENSMUSG00000007783.11	ENSMUST00000063761.8	2793	19	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_13	17.8819862459058	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCACTGTGCTTTTCTGCG	2664	False	NA	-2	True	AATAAA	-20	NA	44624275	44608796	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44609100_44609267_44609361_44609473_44609588_44610181_44610335_44610942_44611075_44611569_44611735_44612166_44612284_44613327_44613434_44614507_44614691_44614794_44614991_44616049_44616135_44616220_44616329_44616481_44616557_44619828_44619967_44620041_44620144_44620659_44620832_44622433_44622574_44623150_44623305_44624018
transcript_51022.known	chr7	-	1508	11	FSM	ENSMUSG00000109324.3	ENSMUST00000107843.11	1508	11	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_9	1333.46760365597	436	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCACTTCTCGCCCTGGGGCT	NA	False	NA	-30	True	AATAAA	-17	NA	44635992	44626181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44626408_44626927_44627050_44627550_44627702_44628098_44628215_44628306_44628395_44628806_44628950_44631010_44631075_44631161_44631318_44632909_44633012_44633503_44633558_44635706
transcript_51026.nic	chr7	+	1392	8	NIC	ENSMUSG00000003184.16	novel	2031	8	NA	NA	-25	0	combination_of_known_junctions	TRUE	canonical	3	10	junction_6	54.0181375435461	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCTGTCGACTGCGTC	NA	False	NA	5	True	AATAAA	-20	NA	44647046	44651814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650241_44651096_44651213_44651587
transcript_51027.known	chr7	+	2031	8	FSM	ENSMUSG00000003184.16	ENSMUST00000003284.16	2031	8	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_5	29.0601066054199	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTTGG	NA	False	NA	NA	False	AAAAAG	-11	NA	44647071	44652272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44649971_44650068_44650447_44651096_44651213_44651587
transcript_51031.known	chr7	+	1641	7	FSM	ENSMUSG00000003184.16	ENSMUST00000207555.2	1641	7	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_1	17.7458915433028	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGCGTCTAGGCTGGTGG	NA	False	NA	16	True	AATAAA	-31	NA	44647112	44651825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44647333_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44650447_44651096_44651213_44651587
transcript_51032.nnic	chr7	+	2155	7	NNC	ENSMUSG00000003184.16	novel	1797	7	NA	NA	-14	0	intron_retention	FALSE	canonical	2	10	junction_1	55.5980115551706	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCTGTCGACTGCGTC	NA	False	NA	5	True	AATAAA	-20	NA	44647057	44651814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_44647803_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44650447_44651096_44651213_44651587
transcript_51033.known	chr7	+	1797	7	FSM	ENSMUSG00000003184.16	ENSMUST00000207476.2	1797	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	53.8196577056707	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGCTGTCGACTGCGTC	NA	False	NA	5	True	AATAAA	-20	NA	44647103	44651814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44647491_44648128_44648302_44649315_44649488_44649577_44649649_44649795_44650447_44651096_44651213_44651587
transcript_51035.known	chr7	-	1596	8	FSM	ENSMUSG00000003190.13	ENSMUST00000208128.2	1596	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	69.0081332089167	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-21	NA	44648136	44640645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44640879_44642167_44642456_44643234_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886_44647068_44648048
transcript_51036.known	chr7	-	1075	7	FSM	ENSMUSG00000003190.13	ENSMUST00000003290.12	1075	7	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_2	18.8473399243029	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-21	NA	44647003	44640645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44640879_44642167_44642456_44643603_44643696_44643786_44643874_44645967_44646111_44646301_44646417_44646886
transcript_51039.nic	chr7	-	1001	6	NIC	ENSMUSG00000003190.13	novel	1596	8	NA	NA	-18	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_2	59.7943141109587	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCGAAAGTGTGTGTGTGT	NA	False	NA	NA	False	ATTAAA	-21	NA	44647021	44640645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_44640879_44642167_44642456_44643786_44643874_44645967_44646111_44646301_44646417_44646886
transcript_51045.known	chr7	+	704	2	FSM	ENSMUSG00000087138.2	ENSMUST00000152595.2	704	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGGCTACAGACTGATTT	NA	False	NA	11	True	NA	NA	NA	44636396	44641752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44636795_44641446
transcript_51046.known	chr7	-	4293	11	FSM	ENSMUSG00000038406.18	ENSMUST00000085383.11	4293	11	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_10	46.9408137978029	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAGGCGTAGTGGTGTACC	5054	False	NA	-6	True	ATTAAA	-17	NA	44665787	44652371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44652796_44652920_44653050_44654828_44655048_44655264_44655348_44655729_44658397_44661546_44661663_44661748_44661850_44662121_44662220_44662640_44662699_44662903_44663018_44665503
transcript_51048.known	chr7	+	995	6	FSM	ENSMUSG00000038387.10	ENSMUST00000044111.10	995	6	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_4	17.1860408471527	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGATGCTTTTTATTTGA	NA	False	NA	9	True	AATAAA	-17	NA	44667384	44671071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44667593_44669523_44669612_44669726_44669830_44669913_44670023_44670510_44670630_44670703
transcript_51049.nic	chr7	-	1041	4	ISM	ENSMUSG00000046574.9	ENSMUST00000057293.8	7023	14	-453	22339	-453	-21647	5prime_fragment	FALSE	canonical	3	13	junction_3	4.10960933531265	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACAGTGCCCTCGTCATT	NA	False	NA	NA	False	NA	NA	NA	44702758	44699325	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_44699553_44699628_44699791_44700641_44700755_44702219
transcript_51050.known	chr7	+	1814	9	FSM	ENSMUSG00000003421.14	ENSMUST00000003513.11	1814	9	0	0	0	0	multi-exon	FALSE	canonical	3	417	junction_1	63.7582102556212	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTCTTTGTTGTTTTATT	3085	False	NA	25	True	NA	NA	NA	44711879	44727634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44725975_44726164_44726244_44726354_44726735
transcript_51053.known	chr7	+	972	9	FSM	ENSMUSG00000003421.14	ENSMUST00000107829.9	972	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_6	164.802912595621	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGATGCCTGGCGCCTCATTG	3058	False	NA	27	True	AATAAA	-18	NA	44711852	44726840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44711956_44722913_44722989_44723405_44723512_44724029_44724112_44725492_44725653_44725733_44725853_44726050_44726164_44726244_44726354_44726735
transcript_51060.known	chr7	-	1623	8	FSM	ENSMUSG00000007837.12	ENSMUST00000210690.2	1623	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	11.5121940673747	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCTTTCTGGGCGCATT	NA	False	NA	-24	True	AATAAA	-44	NA	44712101	44703007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44709628_44709811_44710164_44710317_44711011_44711076_44711801
transcript_51061.known	chr7	-	1295	7	FSM	ENSMUSG00000007837.12	ENSMUST00000007981.9	1295	7	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	9.01233722306385	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAAATAAAAATGCAA	NA	False	NA	-53	True	AATAAA	-15	NA	44711076	44703036	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44709628_44709811_44710164_44710317_44711011
transcript_51062.nic	chr7	-	1435	7	NIC	ENSMUSG00000007837.12	novel	1623	8	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_5	13.4742552876052	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCTTTCTGGGCGCATT	NA	False	NA	-24	True	AATAAA	-44	NA	44711158	44703007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44709628_44709840_44710164_44710317_44711011
transcript_51063.nic	chr7	-	1193	7	NIC	ENSMUSG00000007837.12	novel	1623	8	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_6	13.1106402928648	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCCTTTCTGGGCGCATT	NA	False	NA	-24	True	AATAAA	-44	NA	44711853	44703007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44710164_44710317_44711011_44711076_44711801
transcript_51066.known	chr7	-	876	6	FSM	ENSMUSG00000007837.12	ENSMUST00000209920.2	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	10.7962956610126	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAAACTCGGATCAGACGT	NA	False	NA	NA	False	NA	NA	NA	44711129	44703326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44703622_44703942_44704072_44706166_44706309_44709395_44709436_44710164_44710317_44711011
transcript_51070.nnic	chr7	-	1829	8	NNC	ENSMUSG00000003420.9	novel	1770	7	NA	NA	-2725	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_7	25.6515106767613	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGTGTGCATCGTT	NA	False	NA	-7	True	CATAAA	-10	NA	44756000	44742487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751837_44752096_44752426_44752698_44753063_44753189_44755780
transcript_51071.known	chr7	-	1462	7	FSM	ENSMUSG00000019539.12	ENSMUST00000019683.11	1462	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_6	35.1362427637839	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	6660	False	NA	-4	True	AATAAA	-25	NA	44741645	44732336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741519
transcript_51072.known	chr7	-	1453	7	FSM	ENSMUSG00000019539.12	ENSMUST00000211352.2	1453	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_6	48.2482008875864	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	6660	False	NA	-4	True	AATAAA	-25	NA	44741645	44732336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741528
transcript_51073.nic	chr7	-	1404	7	NIC	ENSMUSG00000019539.12	novel	1453	7	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_6	63.9463751035889	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGTCTGTCTGTCTGTC	6654	False	NA	-4	True	AATAAA	-25	NA	44741651	44732336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_44732788_44732989_44733190_44734327_44734389_44736088_44736262_44737921_44738125_44740864_44741113_44741583
transcript_51074.known	chr7	-	1602	7	FSM	ENSMUSG00000003420.9	ENSMUST00000210642.2	1602	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	28.0475786239502	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATCTGTGTGTGCATCGTT	871	False	NA	-7	True	CATAAA	-10	NA	44753169	44742487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751825_44752096_44752426_44752698_44753063
transcript_51075.known	chr7	-	1770	7	FSM	ENSMUSG00000003420.9	ENSMUST00000003512.9	1770	7	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_3	11.6583303550151	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACACCTCTTGATTGCTA	765	False	NA	67	True	AATAAA	-26	NA	44753275	44742413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44742780_44743205_44743323_44744583_44744854_44751333_44751610_44751837_44752096_44752426_44752698_44753063
transcript_51080.known	chr7	-	595	2	FSM	ENSMUSG00000003420.9	ENSMUST00000211535.2	595	2	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGGCTCGTCTCTGTGTCCGT	821	False	NA	NA	False	AATACA	-13	NA	44753219	44752258	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44752698_44753063
transcript_51083.known	chr7	-	661	5	FSM	ENSMUSG00000003429.12	ENSMUST00000003521.10	661	5	0	0	0	0	multi-exon	FALSE	canonical	3	18027	junction_3	5229.01092463957	24883	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTTGGAGTCTCATGTGTC	NA	False	NA	-1	True	AATAAA	-24	NA	44773863	44771802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44771983_44772252_44772383_44772586_44772663_44772842_44772975_44773720
transcript_51084.known	chr7	-	493	5	FSM	ENSMUSG00000003429.12	ENSMUST00000211725.2	493	5	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_1	12273.9079045755	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTCTGGCCAATGCCCTA	NA	False	NA	-55	True	NA	NA	NA	44773759	44771856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44771973_44772252_44772383_44772586_44772663_44772842_44772975_44773720
transcript_51087.known	chr7	-	734	8	FSM	ENSMUSG00000074129.15	ENSMUST00000209626.2	734	8	0	0	0	0	multi-exon	FALSE	canonical	3	1166	junction_7	5527.98350879137	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAGAAAATCTGCAAGTT	NA	False	NA	-52	True	NA	NA	NA	44778159	44775426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44777965
transcript_51114.known	chr7	-	690	8	FSM	ENSMUSG00000074129.15	ENSMUST00000209812.2	690	8	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_5	5944.08936744421	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGTTCCTTAGGCACTGC	NA	False	NA	45	True	NA	NA	NA	44778147	44775295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776132_44776219_44776414_44776512_44776632_44776699_44776919_44776993_44778123
transcript_51115.known	chr7	-	562	7	FSM	ENSMUSG00000074129.15	ENSMUST00000210191.2	562	7	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_2	7369.60067703053	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACCCAATAAAGACTGTTT	NA	False	NA	3	True	NA	NA	NA	44778160	44775371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44775457_44775538_44775678_44775901_44775962_44776414_44776517_44776632_44776699_44776919_44776993_44778123
transcript_51116.known	chr7	-	658	8	FSM	ENSMUSG00000074129.15	ENSMUST00000210967.2	658	8	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_2	5939.18297480076	471	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGCCTGGCCTGCCCTT	NA	False	NA	-5	True	AATAAA	-15	NA	44778144	44775345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44775457_44775538_44775678_44775901_44775962_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
transcript_51117.known	chr7	-	449	6	FSM	ENSMUSG00000074129.15	ENSMUST00000211037.2	449	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6647.57700218659	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCGCCGCCAACTAGGGAAGT	NA	False	NA	18	True	AATAAA	-38	NA	44778126	44775322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44775442_44776132_44776219_44776414_44776517_44776632_44776699_44776919_44776993_44778123
transcript_51118.known	chr7	-	514	7	FSM	ENSMUSG00000074129.15	ENSMUST00000209212.2	514	7	0	0	0	0	multi-exon	FALSE	canonical	3	332	junction_3	5972.4797311409	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATAAAGACTGTTTGC	NA	False	NA	5	True	NA	NA	NA	44778126	44775369	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44775457_44775538_44775662_44775901_44775962_44776414_44776517_44776632_44776699_44776919_44776993_44778123
transcript_51120.known	chr7	-	3537	17	FSM	ENSMUSG00000007833.16	ENSMUST00000209963.2	3537	17	0	0	0	0	multi-exon	TRUE	canonical	3	349	junction_15	41.3256881370413	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGTTTTTGTTTTGG	9333	False	NA	NA	False	NA	NA	NA	44803997	44790328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44791527_44792203_44792327_44792536_44792723_44793936_44794139_44794290_44794459_44794899_44795031_44795108_44795215_44795326_44795464_44795617_44795714_44796046_44796233_44796585_44796739_44796822_44797005_44797148_44797227_44797307_44797487_44798037_44798165_44799087_44799191_44803815
transcript_51128.known	chr7	+	1185	10	FSM	ENSMUSG00000003423.16	ENSMUST00000085375.13	1185	10	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	85.8518678298646	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTCCAGACAATGATGCAT	NA	False	NA	20	True	AATAAA	-20	NA	44803737	44809488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44803965_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
transcript_51130.known	chr7	+	1077	10	FSM	ENSMUSG00000003423.16	ENSMUST00000210139.2	1077	10	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_1	50.5151242478703	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCCAGACAATGATGCATG	NA	False	NA	21	True	AATAAA	-21	NA	44803726	44809489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44803845_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
transcript_51133.nic	chr7	+	1090	10	NIC	ENSMUSG00000003423.16	novel	1077	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	115.92792567202	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCCAGACAATGATGCATG	NA	False	NA	21	True	AATAAA	-21	NA	44803726	44809489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_44803845_44805716_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
transcript_51137.known	chr7	+	1072	10	FSM	ENSMUSG00000003423.16	ENSMUST00000107811.4	1072	10	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	115.619106456406	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCCAGACAATGATGCATG	NA	False	NA	21	True	AATAAA	-21	NA	44805366	44809489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44805480_44805729_44805824_44806155_44806223_44807026_44807207_44807864_44807927_44808010_44808093_44808413_44808544_44808676_44808753_44809104_44809249_44809365
transcript_5114.nnic	chr10	+	917	3	NNC	ENSMUSG00000056821.14	novel	1056	3	NA	NA	-85	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	23	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCTGATTTTTGTTTTG	NA	False	NA	NA	False	NA	NA	NA	82647871	82660076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_82647970_82654864_82654958_82659350
transcript_51148.known	chr7	-	2685	16	FSM	ENSMUSG00000007833.16	ENSMUST00000107815.4	2685	16	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_14	34.1011567089577	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGGAAGGCAGTCTTCTTC	9322	False	NA	NA	False	NA	NA	NA	44804008	44791868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44792327_44792536_44792723_44793936_44794139_44794290_44794459_44794899_44795031_44795108_44795215_44795326_44795464_44795617_44795714_44796046_44796233_44796585_44796739_44796822_44797005_44797148_44797227_44797307_44797487_44798037_44798165_44799087_44799191_44803815
transcript_51149.nnic	chr7	-	2054	20	NNC	ENSMUSG00000038292.15	novel	2262	20	NA	NA	357	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_11	15.2344557716802	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACAGGATGATTTCCTC	9435	False	NA	-4	True	NA	NA	NA	44853959	44833047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44836075_44836135_44837565_44837722_44838035_44838124_44838276_44838342_44838764_44838825_44839060_44839118_44839373_44839452_44842599_44842651_44842882_44843001_44843383_44843546_44843773_44843841_44844952_44845018_44845391_44845579_44845930_44846036_44849668_44849810_44853866
transcript_51158.nic	chr7	-	1187	11	ISM	ENSMUSG00000038292.15	ENSMUST00000121017.5	2262	20	14743	0	-83	0	3prime_fragment	FALSE	canonical	3	35	junction_4	6.66033032213868	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCACAGGATGATTTCCTC	9322	False	NA	-4	True	NA	NA	NA	44839573	44833047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_44833316_44833415_44833533_44833612_44833678_44834701_44834754_44836075_44836135_44837565_44837722_44838035_44838124_44838276_44838342_44838764_44838825_44839060_44839118_44839373
transcript_51170.known	chr7	-	1149	5	FSM	ENSMUSG00000030792.9	ENSMUST00000033057.9	1149	5	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	6.17960354715414	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTTGGTATCTCTTC	8301	False	NA	2	True	AATAAA	-23	NA	44861547	44856942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44857323_44859536_44859627_44859754_44859896_44860824_44860995_44861179
transcript_51172.known	chr7	-	662	4	FSM	ENSMUSG00000030792.9	ENSMUST00000210741.2	662	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	19.9387952383176	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCAATCTCCTTTTGGTAT	8612	False	NA	-4	True	AATAAA	-17	NA	44861236	44856948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44857323_44859536_44859627_44859754_44859896_44861179
transcript_51176.known	chr7	+	2140	12	FSM	ENSMUSG00000030796.18	ENSMUST00000033060.14	2140	12	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	60.1724793633042	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAAAGGGGATTTATTTGA	5430	False	NA	NA	False	AATAAA	-38	NA	44865176	44883068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44865257_44866636_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
transcript_51178.nic	chr7	+	2119	12	NIC	ENSMUSG00000030796.18	novel	3396	11	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	97.4747265400093	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCCAAAAACCCAAAGGGGA	5516	False	NA	NA	False	AATAAA	-29	NA	44865262	44883059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_44865331_44866636_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
transcript_51184.known	chr7	-	1268	9	FSM	ENSMUSG00000030798.16	ENSMUST00000033063.15	1268	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	25.228641957109	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTTTTTTTTTTTTTTTT	4144	False	NA	-22	True	AATAAA	-16	NA	44888539	44883064	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44883403_44884107_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083_44888159_44888383
transcript_51186.known	chr7	-	1227	8	FSM	ENSMUSG00000030798.16	ENSMUST00000098461.10	1227	8	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	15.6426940630769	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTTTTTTTTGGTAAAAA	4419	False	NA	-13	True	AATAAA	-25	NA	44888264	44883055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44883403_44884107_44884192_44884830_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083
transcript_5119.known	chr10	+	2297	15	FSM	ENSMUSG00000020250.12	ENSMUST00000219962.3	2297	15	0	0	0	0	multi-exon	TRUE	canonical	1	267	junction_3	142.059218034492	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGGTGTAGCATTGTCTC	NA	False	NA	NA	False	AATACA	-16	NA	82695040	82732439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_82695135_82696357_82696465_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
transcript_51190.known	chr7	-	2541	6	FSM	ENSMUSG00000030798.16	ENSMUST00000209779.2	2541	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_5	4.63033476111609	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTTTTTTTTGGT	4444	False	NA	-18	True	AATAAA	-20	NA	44888239	44883060	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44885068_44885538_44885644_44886425_44886501_44886583_44886709_44887923_44887997_44888083
transcript_51195.known	chr7	+	3396	11	FSM	ENSMUSG00000030796.18	ENSMUST00000107801.10	3396	11	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_7	23.9883304963059	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGCC	5529	False	NA	NA	False	AATAAA	-13	NA	44865275	44883043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44866875_44867504_44867570_44868567_44868631_44869861_44869970_44870066_44870126_44873104_44873170_44875076_44875220_44878062_44878237_44880732_44880895_44881606_44881760_44882238
transcript_51196.known	chr7	+	1241	4	FSM	ENSMUSG00000094152.6	ENSMUST00000210163.2	1241	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	2.05480466765633	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTGCGTGAGGCTCGATTT	NA	False	NA	NA	False	AATAAA	-19	NA	44917573	44922789	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44917623_44917871_44918357_44921914_44922078_44922245
transcript_51198.known	chr7	-	498	5	FSM	ENSMUSG00000038260.11	ENSMUST00000210311.2	498	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	72.5857251806442	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGCTTATGGGTTGCTGTC	NA	False	NA	NA	False	NA	NA	NA	44954766	44953000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44953117_44954032_44954139_44954218_44954292_44954371_44954505_44954696
transcript_51199.known	chr7	+	653	1	FSM	ENSMUSG00000046721.12	ENSMUST00000026901.12	653	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	969	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTACACAGAATAATAAAAGT	NA	False	NA	NA	False	AAGAAA	-9	NA	44974388	44975041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44974400_44975000
transcript_51200.known	chr7	+	2411	6	FSM	ENSMUSG00000038239.12	ENSMUST00000085351.7	2411	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.87054001888146	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTGTCCCGAGTGGGGT	NA	False	NA	NA	False	AATAAA	-16	NA	44984713	44988398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_44986799_44986884_44986956_44987310_44987380_44987577_44987633_44988112_44988150_44988304
transcript_51201.nic	chr7	+	248	2	ISM	ENSMUSG00000038239.12	ENSMUST00000085351.7	2411	6	3282	0	3225	0	3prime_fragment	FALSE	canonical	2	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTGTCCCGAGTGGGGT	1082	False	NA	NA	False	AATAAA	-16	NA	44987995	44988398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_44988150_44988304
transcript_51203.nic	chr7	-	1660	8	ISM	ENSMUSG00000003863.19	ENSMUST00000211067.2	4565	30	23008	149	-2546	0	3prime_fragment	FALSE	canonical	3	8	junction_7	19.3422451897289	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTGGTGACCAGCCT	4440	False	NA	-2	True	NA	NA	NA	44993130	44988698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991749_44991926_44992976
transcript_51206.nnic	chr7	-	1437	7	NNC	ENSMUSG00000003863.19	novel	3899	26	NA	NA	-1074	0	at_least_one_novel_splicesite	FALSE	canonical	2	20	junction_6	15.0711276581711	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTGGTGACCAGCCT	5912	False	NA	-2	True	NA	NA	NA	44991658	44988698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_44989442_44989612_44989685_44989998_44990171_44990341_44990411_44990492_44990669_44991110_44991209_44991551
transcript_51208.known	chr7	-	735	6	FSM	ENSMUSG00000003872.10	ENSMUST00000003971.10	735	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.93907194296653	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGAGTGTCTTGTGTGTCTG	7942	False	NA	1	True	TTTAAA	-16	NA	45020007	45017314	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45017423_45017727_45017892_45018564_45018775_45019338_45019411_45019550_45019670_45019945
transcript_51209.nic	chr7	-	1435	5	NIC	ENSMUSG00000003872.10	novel	735	6	NA	NA	-27	0	intron_retention	FALSE	canonical	2	8	junction_1	1.22474487139159	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGAGTGTCTTGTGTGTCTG	7915	False	NA	1	True	TTTAAA	-16	NA	45020034	45017314	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_45017423_45017727_45018775_45019338_45019411_45019550_45019670_45019945
transcript_5121.known	chr10	+	3325	14	FSM	ENSMUSG00000020250.12	ENSMUST00000020484.9	3325	14	0	0	0	0	multi-exon	FALSE	canonical	1	113	junction_1	208.745903123884	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGTGCCTTCTGACTGAGT	NA	False	NA	15	True	AATAAA	-16	NA	82695012	82733546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_82695135_82710446_82710570_82711457_82711531_82713099_82713220_82715039_82715183_82715583_82715700_82717556_82717783_82719747_82719841_82720318_82720396_82720775_82720933_82721019_82721128_82723006_82723103_82726217_82726353_82731810
transcript_51210.known	chr7	-	1467	4	FSM	ENSMUSG00000003863.19	ENSMUST00000211098.2	1467	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	3.55902608401044	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCCTAGCTTTTGTTCTTA	6986	False	NA	-3	True	NA	NA	NA	44990584	44988550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_44989442_44989612_44989685_44989998_44990411_44990492
transcript_51219.nic	chr7	-	1856	11	NIC	ENSMUSG00000063511.12	novel	3035	11	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	44	junction_10	573.136842298591	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATAGTGGGCATGTGATGTC	8990	False	NA	-10	True	AATAAA	-15	NA	45045217	45025886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044516_45044597_45044932
transcript_51223.known	chr7	-	1735	10	FSM	ENSMUSG00000063511.12	ENSMUST00000074575.11	1735	10	0	0	0	0	multi-exon	FALSE	canonical	3	1192	junction_9	143.840189098875	1232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGATGTCTTACTGCACT	9041	False	NA	0	True	AATAAA	-25	NA	45045166	45025876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45026703_45026779_45026868_45030140_45030243_45033227_45033310_45036666_45036730_45036812_45036878_45041502_45041558_45041686_45041750_45044082_45044240_45044932
transcript_51224.known	chr7	+	1963	3	FSM	ENSMUSG00000074121.4	ENSMUST00000058879.8	1963	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	4	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGGCTCCGCCTTGAA	637	False	NA	NA	False	NA	NA	NA	45063118	45066603	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_45063213_45064154_45064279_45064858
transcript_51226.known	chr7	+	3678	16	FSM	ENSMUSG00000003865.17	ENSMUST00000003964.17	3678	16	0	0	0	0	multi-exon	TRUE	canonical	3	89	junction_1	61.1041369757855	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGCTGGACATAAGCTC	1027	False	NA	25	True	AATACA	-21	NA	45084267	45106043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_45084595_45085955_45086138_45087525_45087718_45088902_45089089_45089328_45089474_45091846_45091965_45092339_45092461_45092951_45093059_45094055_45094116_45094202_45094282_45097321_45097436_45097676_45097804_45100986_45101083_45101174_45101339_45104245_45104327_45104464
transcript_51229.nic	chr7	-	1709	16	NIC	ENSMUSG00000003868.15	novel	2312	18	NA	NA	-51	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_15	624.837258812245	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTCTGCTGTGTCCTCAGA	9045	False	NA	-3	True	TATAAA	-16	NA	45084184	45071320	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675_45083781_45084043
transcript_51242.known	chr7	+	605	4	FSM	ENSMUSG00000003865.17	ENSMUST00000210563.2	605	4	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_3	10.9848380355227	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCATCCAGCGGAACCGCAC	NA	False	NA	NA	False	NA	NA	NA	45097154	45101275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_45097436_45097676_45097804_45100986_45101083_45101174
transcript_51244.known	chr7	-	1834	15	FSM	ENSMUSG00000003868.15	ENSMUST00000107771.12	1834	15	0	0	0	0	multi-exon	FALSE	canonical	3	1951	junction_14	206.139144605714	1573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCTGCTGTGTCCTCAG	9182	False	NA	-4	True	TATAAA	-15	NA	45084047	45071321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45071430_45071515_45071631_45071808_45071939_45072111_45072232_45073502_45073622_45073706_45073802_45074105_45074230_45074374_45074469_45074567_45074675_45077902_45077970_45078076_45078207_45078877_45079020_45079332_45079389_45080743_45080799_45083675
transcript_51248.known	chr7	-	710	4	FSM	ENSMUSG00000050708.17	ENSMUST00000210375.2	710	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	30194.0672355054	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	False	NA	-20	True	AATAAA	-16	NA	45108845	45107368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108747
transcript_51249.known	chr7	-	968	4	FSM	ENSMUSG00000050708.17	ENSMUST00000094434.13	968	4	0	0	0	0	multi-exon	TRUE	canonical	3	56898	junction_1	7359.57672393974	8217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGTGTTTTTTCTATATA	NA	False	NA	-19	True	AATAAA	-17	NA	45109308	45107367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45107708_45107958_45108085_45108507_45108655_45108953
transcript_51250.known	chr7	-	943	4	FSM	ENSMUSG00000050708.17	ENSMUST00000210106.2	943	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	31741.9424561398	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	False	NA	-20	True	AATAAA	-16	NA	45109263	45107368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45107708_45107958_45108106_45108507_45108655_45108953
transcript_51253.known	chr7	-	825	3	FSM	ENSMUSG00000050708.17	ENSMUST00000211500.2	825	3	0	0	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	6244.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGCTTTTTGAGACAGC	NA	False	NA	-40	True	AGTAAA	-2	NA	45108887	45107388	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45107708_45107958_45108085_45108507
transcript_51254.known	chr7	-	604	2	FSM	ENSMUSG00000050708.17	ENSMUST00000211694.2	604	2	0	0	0	0	multi-exon	FALSE	canonical	3	56898	junction_1	0	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTTTTTTCTATAT	NA	False	NA	-20	True	AATAAA	-16	NA	45108223	45107368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45107708_45107958
transcript_51255.known	chr7	-	4853	13	FSM	ENSMUSG00000030824.18	ENSMUST00000211765.2	4853	13	0	0	0	0	multi-exon	FALSE	canonical	3	464	junction_7	37.8483817355511	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGGTTGTGATTCCTGGT	NA	False	NA	NA	False	AATAAA	-15	NA	45159830	45139881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45143374_45143540_45143638_45144041_45144213_45144476_45144570_45144645_45144739_45144978_45145038_45147823_45147915_45148148_45148335_45149225_45149330_45151006_45151140_45152601_45152710_45159129_45159272_45159746
transcript_5126.known	chr10	+	123179	4	FSM	ENSMUSG00000020255.9	ENSMUST00000020488.9	123179	4	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	5.24933858267454	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTTGTGTCAGTAAAGTTC	NA	False	NA	5	True	AATAAA	-14	NA	83196084	83324369	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_83196238_83197910_83197998_83200242_83200380_83201567
transcript_51278.known	chr7	-	5323	7	FSM	ENSMUSG00000011382.9	ENSMUST00000011526.7	5323	7	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_4	6.73300329224139	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACCTTCCAATTCAGTGTT	NA	False	NA	-9	True	ACTAAA	-4	NA	45138229	45120410	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45124800_45125028_45125177_45128432_45128558_45131212_45131466_45136164_45136329_45137483_45137596_45138097
transcript_51289.known	chr7	-	801	6	FSM	ENSMUSG00000003873.12	ENSMUST00000211365.2	801	6	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	1143.13684220219	1010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCCCTTGTCCGCCCA	9977	False	NA	-2	True	AATAAA	-22	NA	45116260	45111120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45111387_45112822_45112928_45114612_45114749_45115400_45115548_45115643_45115696_45116165
transcript_51293.nic	chr7	+	821	5	ISM	ENSMUSG00000023467.19	ENSMUST00000085331.14	1525	10	4967	0	3761	0	3prime_fragment	FALSE	canonical	3	69	junction_2	4.38748219369606	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTTCTGTGCGTTTGGA	5045	False	NA	17	True	AATAAA	-18	NA	45168992	45171806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_45169268_45170163_45170279_45170366_45170466_45171267_45171440_45171646
transcript_51295.nnic	chr7	-	815	5	NIC	ENSMUSG00000003873.12	novel	867	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	105	junction_4	1322.49735349452	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCCCTTGTCCGCCCA	9915	False	NA	-2	True	AATAAA	-22	NA	45116322	45111120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_45111391_45112822_45112928_45114612_45114749_45115400_45115548_45116165
transcript_513.nic	chr1	-	3245	13	ISM	ENSMUSG00000042197.14	ENSMUST00000019861.13	3958	15	63	8095	-38	7903	5prime_fragment	FALSE	canonical	3	234	junction_5	31.6503247306494	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAACTGCTGTCTGTTTC	NA	False	NA	-4	True	AATAAA	-13	NA	33853545	33808720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_33808989_33809849_33809981_33811973_33812115_33815349_33816945_33818124_33818273_33818976_33819131_33821148_33821276_33822121_33822273_33822933_33823046_33825487_33825614_33844419_33844501_33852807_33852892_33853418
transcript_51304.known	chr7	-	2333	3	FSM	ENSMUSG00000040435.13	ENSMUST00000042105.11	2333	3	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_2	34	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTACGTGTGTTCTTTAT	3861	False	NA	44	True	AATAAA	-24	NA	45175692	45172340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45172747_45173162_45174816_45175418
transcript_51305.known	chr7	-	2111	13	FSM	ENSMUSG00000030824.18	ENSMUST00000033096.16	2111	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	147.246014848922	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATCCTGCCCTCTTCCAA	NA	False	NA	-4	True	AATAAA	-19	NA	45159750	45142531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45143374_45143540_45143626_45144041_45144213_45144476_45144570_45144645_45144739_45144978_45145038_45147823_45147915_45148148_45148335_45149225_45149330_45151006_45151140_45152601_45152710_45159129_45159272_45159746
transcript_51309.known	chr7	+	476	2	FSM	ENSMUSG00000040428.20	ENSMUST00000211348.2	476	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCCAACACTGTCCAAAATTG	NA	False	NA	-58	True	NA	NA	NA	45199312	45203587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_45199390_45203188
transcript_51310.known	chr7	+	1400	9	FSM	ENSMUSG00000030825.20	ENSMUST00000107752.12	1400	9	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_3	205.455591308682	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGGAGTGGTCGTGTCCT	NA	False	NA	10	True	NA	NA	NA	45204316	45216745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_45204491_45205478_45205518_45205736_45205820_45207031_45207099_45208804_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
transcript_51317.nic	chr7	+	1318	5	ISM	ENSMUSG00000030825.20	ENSMUST00000107752.12	1400	9	4204	3	-109	0	3prime_fragment	FALSE	canonical	3	557	junction_3	22.2864869371554	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTTGGAGTGGTCGTGT	NA	False	NA	7	True	NA	NA	NA	45208520	45216742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_45208897_45212338_45212444_45215378_45215447_45215543_45215641_45216070
transcript_5132.known	chr10	-	6027	23	FSM	ENSMUSG00000020256.15	ENSMUST00000020497.14	6027	23	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_9	8.2773463628096	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCTTTTCTCCTTTTTCTC	NA	False	NA	NA	False	NA	NA	NA	83370004	83323313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_83326499_83328338_83328539_83329292_83329399_83331732_83331899_83333335_83333435_83335702_83335803_83337757_83337852_83338305_83338394_83339805_83339912_83339989_83340061_83342461_83342613_83343878_83344007_83344476_83344597_83348153_83348302_83349446_83349539_83350318_83350445_83351911_83352047_83354207_83354298_83354496_83354599_83356133_83356300_83358565_83358801_83363168_83363314_83369830
transcript_51325.known	chr7	+	1772	11	FSM	ENSMUSG00000030826.20	ENSMUST00000033098.16	1772	11	0	0	0	0	multi-exon	TRUE	canonical	3	349	junction_4	47.8895604490164	268	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTGGCTATCATGCTCTAAG	2255	False	NA	NA	False	AATAAA	-18	NA	45219576	45239135	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_45219824_45224854_45224930_45225222_45225427_45234340_45234452_45234534_45234655_45234837_45235002_45237072_45237216_45237358_45237445_45237662_45237804_45237877_45237953_45238729
transcript_51326.known	chr7	-	951	3	FSM	ENSMUSG00000030827.6	ENSMUST00000033099.6	951	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGAACTGAGATATGTTTC	NA	False	NA	NA	False	AATAAA	-29	NA	45264914	45263309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45263735_45264289_45264394_45264492
transcript_51327.known	chr7	+	3202	12	FSM	ENSMUSG00000044562.13	ENSMUST00000057927.10	3202	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	31.446399365553	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTTGTCAAGATTTGGG	NA	False	NA	6	True	AATAAA	-19	NA	45276911	45288517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_45277015_45277189_45277331_45277837_45278506_45279563_45279920_45281659_45282314_45284240_45284279_45284390_45284543_45284639_45284756_45285761_45286006_45286143_45286317_45287293_45287442_45288108
transcript_51330.known	chr7	-	1542	2	FSM	ENSMUSG00000110357.2	ENSMUST00000211533.2	1542	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAGAAAAGGACCAAG	NA	False	NA	NA	False	NA	NA	NA	45288189	45285103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45286563_45288106
transcript_51331.nic	chr7	+	1180	7	ISM	ENSMUSG00000003273.15	ENSMUST00000003360.10	1585	9	1141	73	-32	0	3prime_fragment	FALSE	canonical	3	16	junction_2	3.86221007541882	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTTTCTCGGTGGTTTA	NA	False	NA	3	True	ATTAAA	-14	NA	45350407	45354033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_45350791_45351857_45352044_45352256_45352353_45352485_45352559_45352882_45353038_45353136_45353303_45353912
transcript_51332.nic	chr7	+	1313	6	NIC	ENSMUSG00000003273.15	novel	1585	9	NA	NA	-32	0	intron_retention	FALSE	canonical	3	16	junction_2	4.16653333119993	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCGGTTTCTCGGTGGTTTA	NA	False	NA	3	True	ATTAAA	-14	NA	45350407	45354033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_45350791_45351857_45352044_45352256_45352559_45352882_45353038_45353136_45353303_45353912
transcript_51337.known	chr7	-	3548	7	FSM	ENSMUSG00000057342.16	ENSMUST00000107737.11	3548	7	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_6	23.5141801189552	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAAAAAGCTGGTCTTCAA	3162	False	NA	NA	False	AATAAA	-20	NA	45367426	45358890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45366416_45366488_45367124
transcript_51343.known	chr7	+	679	6	FSM	ENSMUSG00000059070.17	ENSMUST00000072503.13	679	6	0	0	0	0	multi-exon	FALSE	canonical	3	6098	junction_1	973.20817916826	14410	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTGTGTTCATTCATGAA	5922	False	NA	16	True	AATAAA	-23	NA	45367494	45370259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
transcript_51348.known	chr7	+	1027	6	FSM	ENSMUSG00000059070.17	ENSMUST00000209287.2	1027	6	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_1	3241.25016621673	640	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGTCCTCTGTGTTCAT	6008	False	NA	9	True	AATAAA	-16	NA	45367580	45370252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_45368005_45368676_45368764_45368952_45369061_45369343_45369443_45369717_45369912_45370137
transcript_51351.known	chr7	-	2968	6	FSM	ENSMUSG00000057342.16	ENSMUST00000072836.7	2968	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_5	32.4678302324008	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCCTTCACCCCTTCCAC	5957	False	NA	-24	True	AATAAA	-17	NA	45364631	45359708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45364020
transcript_51352.known	chr7	-	2577	6	FSM	ENSMUSG00000057342.16	ENSMUST00000210060.2	2577	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	47.003829631212	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCCGACATCCCTTTCAGTT	3262	False	NA	-6	True	AATAAA	-35	NA	45367326	45359690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45361236_45361481_45361598_45361680_45361776_45361879_45362030_45362683_45363153_45367124
transcript_51357.known	chr7	+	535	5	FSM	ENSMUSG00000059070.17	ENSMUST00000209693.2	535	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	3268.24428210316	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTCCTCTGTGTTCATTCA	5963	False	NA	12	True	AATAAA	-19	NA	45367535	45370255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_45367564_45368676_45368764_45368952_45369061_45369717_45369912_45370137
transcript_5136.known	chr10	+	5858	33	FSM	ENSMUSG00000034560.7	ENSMUST00000038388.7	5858	33	0	0	0	0	multi-exon	TRUE	canonical	3	259	junction_12	27.5850956133924	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCAAAACTGTCCTTCCAT	NA	False	NA	14	True	AATAAA	-17	NA	83379804	83432337	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_83379967_83382648_83382789_83385325_83385380_83385462_83385529_83386127_83386174_83386744_83386813_83390597_83390681_83391436_83391480_83391876_83391981_83392666_83392788_83394461_83394586_83394681_83394810_83396229_83396391_83400274_83400402_83405831_83405958_83407216_83407325_83407956_83408104_83408221_83408302_83409639_83409746_83410306_83410424_83411880_83412050_83412538_83412694_83415345_83415421_83416120_83416226_83417120_83417256_83419118_83419228_83421681_83421749_83422497_83422585_83424020_83424169_83426154_83426252_83426850_83427048_83427552_83427653_83430034
transcript_51361.known	chr7	+	1156	3	FSM	ENSMUSG00000059824.13	ENSMUST00000211513.2	1156	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	20	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCCATCAACACAATCCTGA	NA	False	NA	NA	False	NA	NA	NA	45354692	45359538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_45355187_45357683_45357896_45359088
transcript_51364.nnic	chr7	-	1195	7	NNC	ENSMUSG00000003271.18	novel	1193	7	NA	NA	-7172	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_2	2.80871659105879	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCCTCCTCTGTGCTGACT	7664	False	NA	NA	False	AATAAA	-17	NA	45399342	45379406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_45379624_45380661_45380843_45383042_45383138_45383410_45383538_45384558_45384768_45391477_45391621_45399119
transcript_51365.known	chr7	-	1510	13	FSM	ENSMUSG00000003269.18	ENSMUST00000210853.3	1510	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	169.916809710582	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCCTGACTCCTTATTTGT	3191	False	NA	NA	False	GGGGCT	-40	NA	45463706	45457072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45457273_45457356_45457512_45457599_45457672_45457796_45457903_45458153_45458157_45459550_45459663_45459994_45460144_45460277_45460391_45460952_45461034_45461603_45461723_45462270_45462338_45462432_45462581_45463521
transcript_51366.known	chr7	-	2519	12	FSM	ENSMUSG00000003269.18	ENSMUST00000107729.10	2519	12	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_4	92.1110540651432	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGGGCTAGGAACGCACTG	3162	False	NA	NA	False	AATAAA	-19	NA	45463735	45456060	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45457273_45457356_45457512_45457599_45457672_45457796_45457874_45459550_45459663_45459994_45460144_45460277_45460391_45460952_45461034_45461603_45461723_45462270_45462338_45462432_45462581_45463521
transcript_51367.known	chr7	-	1512	12	FSM	ENSMUSG00000003269.18	ENSMUST00000209245.2	1512	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	132.007888569692	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTTATTTGTAATTAACATG	3171	False	NA	NA	False	NA	NA	NA	45463726	45457062	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45457273_45457356_45457512_45457599_45457672_45457796_45457874_45459546_45459663_45459994_45460144_45460277_45460391_45460952_45461034_45461603_45461723_45462270_45462338_45462432_45462581_45463521
transcript_51368.known	chr7	-	1898	7	FSM	ENSMUSG00000053801.19	ENSMUST00000107723.9	1898	7	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_1	34.207292919623	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAAGTCCTCTGAGCTTCTT	8634	False	NA	-4	True	AATAAA	-31	NA	45480213	45474650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45479715_45479834_45480018
transcript_51372.known	chr7	-	1783	6	FSM	ENSMUSG00000053801.19	ENSMUST00000209484.2	1783	6	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_5	183.663387750526	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTACAAGTCCTCTGAGCTT	8628	False	NA	-7	True	AATAAA	-28	NA	45480219	45474653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45475518_45476564_45476763_45476949_45477093_45477203_45477418_45479405_45479569_45480018
transcript_51373.known	chr7	+	1350	5	FSM	ENSMUSG00000002778.15	ENSMUST00000211716.2	1350	5	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_4	97.5256376549264	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTTGCTGTTCCCTGCCC	3997	False	NA	14	True	AATAAA	-18	NA	45522248	45533153	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45530984_45532400
transcript_51374.known	chr7	+	1599	5	FSM	ENSMUSG00000002778.15	ENSMUST00000002855.14	1599	5	0	0	0	0	multi-exon	TRUE	canonical	3	208	junction_1	16.5378354085412	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCTGTTCCCTGCCCGCT	3944	False	NA	17	True	AATAAA	-21	NA	45522195	45533156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_45522526_45523182_45523284_45523466_45523626_45530923_45531177_45532400
transcript_51376.known	chr7	+	832	5	FSM	ENSMUSG00000002778.15	ENSMUST00000211234.2	832	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	102.020524895729	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGTTTTTGATTCTGATG	4299	False	NA	15	True	AAGAAA	-25	NA	45522550	45532671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_45522599_45523182_45523284_45523466_45523626_45530923_45531177_45532400
transcript_51379.known	chr7	-	967	5	FSM	ENSMUSG00000040231.17	ENSMUST00000039049.16	967	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	22.466641938661	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGTCCTGTCTGTTCCTC	NA	False	NA	-3	True	AGTAAA	-29	NA	45546138	45536268	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45536550_45536790_45536931_45538035_45538274_45545114_45545316_45546031
transcript_5138.known	chr10	-	3020	21	FSM	ENSMUSG00000020263.15	ENSMUST00000020500.14	3020	21	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	12.9324205004322	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTATTGTGGTTAGTTT	NA	False	NA	0	True	AATAAA	-18	NA	83484602	83435896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_83436906_83437746_83437795_83438621_83438763_83438989_83439027_83441623_83441799_83444563_83444617_83444800_83444960_83446841_83446931_83447006_83447064_83447313_83447357_83448575_83448765_83450007_83450167_83453210_83453294_83456561_83456709_83457392_83457452_83457575_83457618_83460482_83460571_83464092_83464165_83464637_83464698_83476869_83476969_83484391
transcript_51381.known	chr7	-	722	4	FSM	ENSMUSG00000040231.17	ENSMUST00000120299.4	722	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	18.0616229121921	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACAGCTAAACAGCCTGT	NA	False	NA	-64	True	NA	NA	NA	45546094	45536329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45536550_45538035_45538274_45545114_45545316_45546031
transcript_51382.known	chr7	+	2297	8	FSM	ENSMUSG00000002781.20	ENSMUST00000069772.16	2297	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	17.4414472344658	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGAGTAGTGTGGCTGC	5492	False	NA	7	True	AATAAA	-14	NA	45546364	45566837	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_45546526_45546858_45547091_45549055_45549161_45556341_45556537_45557530_45557662_45558745_45559026_45565506_45565697_45565834
transcript_51383.known	chr7	-	736	5	FSM	ENSMUSG00000040212.13	ENSMUST00000038876.13	736	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_4	7.77817459305202	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACTCGGCTCCTCTTCCTTC	4358	False	NA	NA	False	AATAAA	-20	NA	45570828	45567446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45567660_45568741_45568883_45569358_45569462_45569712_45569829_45570665
transcript_51384.known	chr7	-	784	5	FSM	ENSMUSG00000040212.13	ENSMUST00000164119.3	784	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	25.7730479377197	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTGACTCGGCTCCTCTT	4911	False	NA	NA	False	AATAAA	-15	NA	45570275	45567451	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45567660_45568741_45568883_45569358_45569462_45569712_45569829_45570059
transcript_51385.known	chr7	+	2598	15	FSM	ENSMUSG00000040189.19	ENSMUST00000210039.3	2598	15	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_9	4.94923205752	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTTCCTACAAGTGTG	3132	False	NA	12	True	AATAAA	-23	NA	45573638	45598387	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_45573811_45573921_45574014_45577947_45578048_45578490_45578681_45585694_45585818_45585979_45586094_45589078_45589147_45591083_45591272_45591482_45591618_45592001_45592085_45592184_45592354_45596806_45596971_45597046_45597145_45597405_45597485_45597564
transcript_51386.known	chr7	+	1078	5	FSM	ENSMUSG00000040189.19	ENSMUST00000211367.2	1078	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	8.39642781187333	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTTTGGTCATGGTG	3160	False	NA	NA	False	NA	NA	NA	45573666	45581037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_45573811_45573921_45574014_45577947_45578048_45578490_45578681_45580485
transcript_51388.known	chr7	-	257	2	FSM	ENSMUSG00000030834.8	ENSMUST00000210962.2	257	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGATTCCTCATCCTAAAAC	NA	False	NA	NA	False	ATTAAA	-19	NA	45622743	45616982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_45617145_45622648
transcript_51391.nic	chr7	-	1806	11	NIC	ENSMUSG00000030839.13	novel	1465	11	NA	NA	-79	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_10	24.9110417285187	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCTGGCAGATTATGGG	NA	False	NA	-10	True	AATAAA	-35	NA	46289134	46092577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_46092960_46165091_46165129_46240030_46240198_46264041_46264201_46268119_46268183_46270984_46271099_46275632_46275694_46282083_46282179_46283178_46283335_46284844_46284981_46288698
transcript_51392.known	chr7	-	1465	11	FSM	ENSMUSG00000030839.13	ENSMUST00000033127.12	1465	11	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_10	7.18609768928867	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTCTGGCAGATTATGGG	NA	False	NA	-10	True	AATAAA	-35	NA	46289231	46092577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_46092960_46165091_46165129_46240030_46240198_46264041_46264201_46268119_46268183_46270984_46271099_46275632_46275694_46282083_46282179_46283178_46283335_46284844_46284981_46289136
transcript_5140.known	chr10	+	1194	6	FSM	ENSMUSG00000087651.4	ENSMUST00000150459.3	1194	6	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	8.16333265278342	94	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGATTTCTTAATTATTT	NA	False	NA	6	True	ATTAAA	-19	NA	83558728	83598626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_83558899_83573772_83573798_83593308_83593345_83593997_83594078_83595456_83595495_83597781
transcript_51401.known	chr7	-	4728	12	FSM	ENSMUSG00000006763.15	ENSMUST00000143082.4	4728	12	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_6	40.4362573576105	393	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-5	NA	46360104	46335531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_46338880_46339226_46339320_46342202_46342400_46348787_46348977_46349059_46349143_46351204_46351386_46351825_46351942_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
transcript_51408.known	chr7	-	2228	10	FSM	ENSMUSG00000006763.15	ENSMUST00000210628.2	2228	10	0	0	0	0	multi-exon	FALSE	canonical	3	340	junction_4	42.8860102660904	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAATGTTTGTATTTTTGTG	NA	False	NA	NA	False	NA	NA	NA	46360082	46341239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_46342400_46348787_46348977_46349059_46349143_46351204_46351386_46351825_46351942_46352044_46352105_46353437_46353518_46356416_46356501_46358287_46358402_46359921
transcript_51409.known	chr7	-	555	4	FSM	ENSMUSG00000040026.9	ENSMUST00000006956.9	555	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	7.31816613336672	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCGCTGTCACTGTTG	NA	False	NA	NA	False	AATAAA	-16	NA	46365124	46361421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_46361689_46362012_46362152_46364433_46364529_46365070
transcript_51410.known	chr7	-	494	3	FSM	ENSMUSG00000040026.9	ENSMUST00000211660.2	494	3	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_2	3.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGTCGCTGTCACTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	46363173	46361422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_46361689_46362012_46362152_46363084
transcript_51412.nic	chr7	+	2814	16	NIC	ENSMUSG00000006599.14	novel	2736	15	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	187.878920821067	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCTCTCTTGGAGTCTT	4697	False	NA	4	True	AATAAA	-15	NA	46445517	46473224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_46445713_46446820_46446890_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
transcript_51413.known	chr7	+	2736	15	FSM	ENSMUSG00000006599.14	ENSMUST00000006774.11	2736	15	0	0	0	0	multi-exon	FALSE	canonical	3	472	junction_5	47.1406925910002	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCTCTCTTGGAGTCTT	4706	False	NA	4	True	AATAAA	-15	NA	46445526	46473224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_46445713_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545_46468639_46472246
transcript_51414.nic	chr7	+	1801	14	ISM	ENSMUSG00000006599.14	ENSMUST00000006774.11	2736	15	12	4531	1	-3640	5prime_fragment	FALSE	canonical	3	472	junction_5	48.9200531237767	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGCGAGTACATTGTTCTT	4718	False	NA	NA	False	NA	NA	NA	46445538	46468693	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_46445713_46451095_46451265_46453240_46453434_46454384_46454548_46456159_46456254_46457960_46458111_46458223_46458304_46461855_46461984_46462085_46462174_46463539_46463629_46464723_46464842_46465807_46465899_46466320_46466437_46468545
transcript_51427.known	chr7	+	1588	8	FSM	ENSMUSG00000063229.16	ENSMUST00000048209.16	1588	8	0	0	0	0	multi-exon	FALSE	canonical	3	6684	junction_1	674.726490316405	5658	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	19	True	AATAAA	-15	NA	46495262	46505051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_46495342_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
transcript_51429.known	chr7	+	1535	8	FSM	ENSMUSG00000063229.16	ENSMUST00000210815.2	1535	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	2882.58672099932	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTCTGCTCTTTTATTAA	NA	False	NA	19	True	AATAAA	-15	NA	46495264	46505051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_46495342_46497019_46497170_46498447_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
transcript_51432.known	chr7	+	1766	8	FSM	ENSMUSG00000063229.16	ENSMUST00000005051.6	1766	8	0	0	0	0	multi-exon	FALSE	canonical	2	26	junction_1	2898.88755580904	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCTCTGCTCTTTTATTA	NA	False	NA	18	True	AATAAA	-14	NA	46496554	46505050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_46496813_46497019_46497170_46498396_46498515_46499601_46499776_46500308_46500483_46501300_46501419_46503406_46503531_46504400
transcript_51444.known	chr7	+	1370	8	FSM	ENSMUSG00000030851.16	ENSMUST00000014545.11	1370	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	3.73619909446343	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTCTGCCTTTTATAA	NA	False	NA	NA	False	NA	NA	NA	46510626	46527566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_46510726_46511186_46511320_46515832_46515951_46519022_46519197_46522335_46522510_46525099_46525218_46525897_46526022_46527136
transcript_51448.nnic	chr7	-	1417	10	NNC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	-14	212	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_2	371.517940679738	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTTCTTGGACTT	NA	False	NA	-34	True	AATAAA	-14	NA	46569731	46539121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_46539453_46540669_46540789_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
transcript_51453.nic	chr7	-	1461	10	NIC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	-14	212	combination_of_known_junctions	FALSE	canonical	3	163	junction_7	331.9070969227	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTTCTTGGACTT	NA	False	NA	-34	True	AATAAA	-14	NA	46569731	46539121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558740_46560492_46560559_46563125_46563211_46569568
transcript_51455.known	chr7	-	1949	10	FSM	ENSMUSG00000014402.16	ENSMUST00000014546.15	1949	10	0	0	0	0	multi-exon	FALSE	canonical	3	992	junction_2	86.0289931030289	569	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAGTACTCTTTGCAAACG	NA	False	NA	NA	False	AATAAA	-30	NA	46569717	46538696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_46539453_46540669_46540910_46542105_46542309_46550774_46550867_46553269_46553337_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
transcript_5146.nnic	chr10	-	897	4	NNC	ENSMUSG00000097076.2	novel	1334	4	NA	NA	-1061	1073	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	12.4721912892465	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATAGGCGTTTTTGACTG	8398	False	NA	-3	True	AATAAA	-18	NA	84390263	84382207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_84382387_84383922_84384062_84385083_84385495_84390095
transcript_51460.nic	chr7	-	1379	8	NIC	ENSMUSG00000014402.16	novel	1949	10	NA	NA	-14	212	combination_of_known_junctions	FALSE	canonical	3	40	junction_3	409.120460280842	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTCTCTTTCTTGGACTT	NA	False	NA	-34	True	AATAAA	-14	NA	46569731	46539121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_46539453_46540669_46540910_46542105_46542309_46556798_46556926_46558652_46558817_46560492_46560559_46563125_46563211_46569568
transcript_51461.nnic	chr7	-	3460	13	NNC	ENSMUSG00000043262.17	novel	4616	12	NA	NA	-1	782	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	22.1773157377834	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGGAGACATAAGGCATTC	NA	False	NA	NA	False	NA	NA	NA	46608276	46572181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_46572335_46574273_46576237_46577168_46577293_46580736_46580801_46587638_46587813_46589880_46590052_46593535_46593639_46594978_46595098_46597660_46597797_46600575_46600740_46604771_46604838_46605365_46605451_46608138
transcript_51462.known	chr7	-	4616	12	FSM	ENSMUSG00000043262.17	ENSMUST00000094398.13	4616	12	0	0	0	0	multi-exon	FALSE	canonical	2	49	junction_10	11.9551503476414	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCTGCTGTCTGATTAAG	NA	False	NA	NA	False	AATAAA	-18	NA	46608275	46572963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_46576237_46577168_46577293_46580736_46580801_46587638_46587813_46589880_46590052_46593535_46593639_46594978_46595098_46597660_46597797_46600575_46600740_46604771_46604838_46605365_46605451_46608138
transcript_51466.known	chr7	-	801	5	FSM	ENSMUSG00000043262.17	ENSMUST00000208388.2	801	5	0	0	0	0	multi-exon	FALSE	canonical	2	49	junction_3	8.74642784226795	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATTTTATCATTACATGT	NA	False	NA	NA	False	TATAAA	-12	NA	46608220	46597392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_46597797_46600575_46600740_46604771_46604838_46605365_46605451_46608138
transcript_51467.known	chr7	-	5223	6	FSM	ENSMUSG00000049516.10	ENSMUST00000061639.10	5223	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	5.03587132480567	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTACTGGTTTTCATTTA	9272	False	NA	-5	True	ATTAAA	-15	NA	46658159	46640143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_46643135_46644312_46644391_46645764_46645934_46647219_46648753_46649518_46649634_46657822
transcript_51468.known	chr7	+	334	2	FSM	ENSMUSG00000109118.2	ENSMUST00000208046.2	334	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGTATACCTGAGTCTGG	NA	False	NA	NA	False	AATAAA	-15	NA	46658292	46658756	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_46658342_46658471
transcript_51469.known	chr7	+	1831	3	FSM	ENSMUSG00000010307.8	ENSMUST00000010451.8	1831	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	1	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTTCCTGACTTGTCTG	NA	False	NA	NA	False	AATAAA	-24	NA	46700348	46704525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_46700550_46702597_46702863_46703160
transcript_51470.known	chr7	+	2410	17	FSM	ENSMUSG00000030471.18	ENSMUST00000118927.8	2410	17	0	0	0	0	multi-exon	TRUE	canonical	3	240	junction_5	25.4348893009189	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTAGTTTCTAATGCTTC	NA	False	NA	9	True	AATAAA	-20	NA	48438750	48477188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_48438886_48445648_48445795_48449576_48449700_48451054_48451133_48452663_48452809_48454097_48454163_48454937_48455101_48455316_48455443_48458540_48458675_48461072_48461174_48465199_48465325_48466167_48466231_48466893_48466988_48468384_48468469_48472317_48472476_48474381_48474480_48476616
transcript_51474.known	chr7	-	3691	13	FSM	ENSMUSG00000046179.18	ENSMUST00000058745.15	3691	13	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_12	14.9024606469312	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTAACATTTTCATTTGGCC	NA	False	NA	-1	True	ATTAAA	-17	NA	48530789	48516176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_48516978_48517401_48517788_48517906_48518040_48520438_48520965_48521560_48521649_48521833_48522035_48523007_48523146_48524719_48524882_48525204_48525520_48527689_48527847_48528172_48528452_48530025_48530150_48530408
transcript_51479.nic	chr7	+	927	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	-25	-364	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	93.7861397009174	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTGGTGTGCTTCTCCT	9855	False	NA	3	True	TATAAA	-17	NA	49408837	49423359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_49408894_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_51480.nic	chr7	+	1291	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	93.7861397009174	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9855	False	NA	-5	True	NA	NA	NA	49408837	49423723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_49408894_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_51481.nnic	chr7	+	912	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	-66	-364	combination_of_known_splicesites	FALSE	canonical	3	34	junction_1	90.6598036618214	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGTGGTGTGCTTCTCCT	9814	False	NA	3	True	TATAAA	-17	NA	49408796	49423359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_49408894_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_51482.nnic	chr7	+	1276	6	NIC	ENSMUSG00000039745.9	novel	1418	6	NA	NA	-66	0	combination_of_known_splicesites	FALSE	canonical	3	34	junction_1	90.6598036618214	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9814	False	NA	-5	True	NA	NA	NA	49408796	49423723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_49408894_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_51483.known	chr7	+	1338	6	FSM	ENSMUSG00000039745.9	ENSMUST00000207895.2	1338	6	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	54.5688555863141	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9918	False	NA	-5	True	NA	NA	NA	49408900	49423723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_49409060_49409345_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_51486.known	chr7	+	1418	6	FSM	ENSMUSG00000039745.9	ENSMUST00000085272.7	1418	6	0	0	0	0	multi-exon	TRUE	canonical	3	12	junction_1	99.2685247195706	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATAAAAATAAATGGAGAAA	9894	False	NA	-5	True	NA	NA	NA	49408876	49423723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_49409060_49409289_49409542_49411807_49411916_49420557_49420696_49422323_49422386_49423048
transcript_51489.known	chr7	+	983	3	FSM	ENSMUSG00000039745.9	ENSMUST00000208048.2	983	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	102	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCATTGTCTCGCTCTTAC	9880	False	NA	NA	False	AATAAA	-14	NA	49408862	49412507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_49408894_49409289_49409542_49411807
transcript_51493.known	chr7	+	2507	16	FSM	ENSMUSG00000030505.18	ENSMUST00000032715.13	2507	16	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_1	68.5528506579656	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTGAATGTTTTCATGAA	NA	False	NA	44	True	AATAAA	-28	NA	49428093	49508013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_49428250_49428328_49428462_49430056_49430140_49430868_49430919_49431689_49431793_49435814_49435975_49436980_49437123_49441720_49441787_49448053_49448176_49456274_49456375_49467779_49467859_49476455_49476644_49478691_49478779_49498242_49498294_49498484_49498573_49507114
transcript_51495.known	chr7	+	1232	1	FSM	ENSMUSG00000078636.5	ENSMUST00000107041.5	1232	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11683	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	ACAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	51396394	51397626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_51396400_51397600
transcript_51496.nnic	chr7	+	2289	9	NIC	ENSMUSG00000030498.16	novel	3158	10	NA	NA	-76	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	15.4008928312614	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACACATTATTTGTCTCT	941	False	NA	1	True	ATTAAA	-18	NA	51512098	51644201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_51512394_51514029_51514118_51537659_51537825_51546998_51547121_51576150_51576293_51586301_51586366_51593397_51593540_51602941_51603050_51643038
transcript_51498.known	chr7	+	3905	23	FSM	ENSMUSG00000033790.12	ENSMUST00000032627.5	3905	23	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_19	13.708973353728	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTCGGTTCAGTTTGGG	NA	False	NA	NA	False	AATATA	-19	NA	55443901	55481425	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205_55466405_55466986_55467176_55468461_55468645_55471526_55471612_55471725_55471847_55473267_55473447_55475327_55475454_55475980_55476070_55479078_55479180_55480589
transcript_515.known	chr1	-	2487	7	FSM	ENSMUSG00000042182.17	ENSMUST00000062289.11	2487	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	6.36832439151427	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACTTTCTTATGGTTCAC	NA	False	NA	2	True	AATAAA	-23	NA	33946897	33891132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_33892449_33901734_33901855_33902822_33903016_33903603_33903825_33917340_33917519_33922521_33922730_33946646
transcript_51501.nic	chr7	+	2604	18	ISM	ENSMUSG00000033790.12	ENSMUST00000206789.2	3735	21	-7	4967	4	3092	5prime_fragment	FALSE	canonical	3	67	junction_15	9.6774986044305	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGGTCCTGGAAAGTTTT	NA	False	NA	3	True	AATAAA	-14	NA	55443905	55471880	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_55444089_55445645_55445700_55445786_55445896_55448579_55448677_55449210_55449291_55450376_55450513_55454328_55454444_55455042_55455133_55455800_55455895_55456330_55456578_55458258_55458462_55463180_55463297_55464607_55464877_55466205_55466405_55466986_55467176_55468461_55468645_55471526_55471612_55471725
transcript_51504.known	chr7	+	4195	31	FSM	ENSMUSG00000030447.16	ENSMUST00000085255.11	4195	31	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_15	147.013453654948	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCTACCAGTTTCTTTTAA	NA	False	NA	5	True	NA	NA	NA	55491953	55580246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_55492056_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547572_55547721_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
transcript_51505.known	chr7	+	6440	31	FSM	ENSMUSG00000030447.16	ENSMUST00000032629.16	6440	31	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_19	46.6292707308284	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATGGAAAAAATAAAACATT	NA	False	NA	NA	False	NA	NA	NA	55491818	55582350	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_55492056_55521606_55521725_55521814_55521905_55523193_55523272_55523404_55523507_55524654_55524837_55527438_55527536_55527626_55527756_55528824_55528930_55536473_55536566_55537569_55537688_55541736_55541860_55542867_55542994_55544728_55544896_55546415_55546564_55547985_55548140_55549662_55549820_55550251_55550349_55553936_55554014_55554121_55554231_55557066_55557187_55558112_55558313_55563187_55563276_55569167_55569312_55572494_55572586_55573622_55573754_55574121_55574195_55574859_55574955_55576035_55576275_55577934_55578083_55579745
transcript_51509.nic	chr7	-	3329	8	NIC	ENSMUSG00000030452.17	novel	3925	7	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_6	93.4351242787186	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612229	55581034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55594706_55594834_55611199_55611321_55611947
transcript_5151.known	chr10	+	2725	10	FSM	ENSMUSG00000020034.8	ENSMUST00000020223.8	2725	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.1308895119123	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTAATCTTTTCATTCTTT	NA	False	NA	NA	False	AATAAA	-22	NA	84412489	84450223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_84412877_84420611_84420920_84422967_84423104_84425747_84425869_84426951_84427173_84430511_84430649_84440370_84440553_84440749_84440932_84444328_84444502_84449345
transcript_51514.known	chr7	-	3197	7	FSM	ENSMUSG00000030452.17	ENSMUST00000032635.14	3197	7	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_5	25.3837218179946	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612224	55581034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55611947
transcript_51515.nic	chr7	-	3001	7	NIC	ENSMUSG00000030452.17	novel	3197	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_6	69.789564644962	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612224	55581034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55612143
transcript_51517.nic	chr7	-	1721	7	NIC	ENSMUSG00000030452.17	novel	3197	7	NA	NA	0	683	combination_of_known_junctions	FALSE	canonical	3	33	junction_6	69.789564644962	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCATCAATACCTCATCAT	NA	False	NA	NA	False	ATTAAA	-21	NA	55612224	55582314	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611199_55611321_55612143
transcript_51523.known	chr7	-	3039	6	FSM	ENSMUSG00000030452.17	ENSMUST00000117812.8	3039	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	82.412620392753	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612187	55581034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55611947
transcript_51524.nnic	chr7	-	2880	6	NIC	ENSMUSG00000030452.17	novel	3197	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	11	junction_5	84.7924524943111	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTTGGGGTTTCCCAGCCC	NA	False	NA	-20	True	AATAAA	-16	NA	55612224	55581034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55612143
transcript_51526.nnic	chr7	-	1600	6	NIC	ENSMUSG00000030452.17	novel	3197	7	NA	NA	0	683	combination_of_known_splicesites	FALSE	canonical	3	11	junction_5	84.7924524943111	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCCATCAATACCTCATCAT	NA	False	NA	NA	False	ATTAAA	-21	NA	55612224	55582314	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_55583296_55585545_55585707_55587319_55587411_55592727_55592785_55594228_55594458_55612143
transcript_5153.known	chr10	+	4975	28	FSM	ENSMUSG00000034453.9	ENSMUST00000077175.7	4975	28	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_10	22.7726281441689	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTCTGAGAGGTGATGT	NA	False	NA	22	True	NA	NA	NA	84458155	84563042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_84458403_84464113_84464147_84464346_84464404_84464490_84464556_84467648_84467725_84468318_84468420_84470764_84470857_84473918_84474037_84475605_84475715_84482659_84482783_84488537_84488658_84491808_84491944_84503185_84503348_84509191_84509393_84510420_84510584_84512746_84512901_84515609_84515685_84516229_84516329_84520040_84520169_84528660_84528871_84531418_84531578_84532812_84532931_84535262_84535406_84549492_84549597_84550108_84550276_84554273_84554388_84556207_84556382_84561514
transcript_51532.known	chr7	+	399	1	FSM	ENSMUSG00000078087.6	ENSMUST00000183090.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATTTTGGCTGAAAAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	55663763	55664162	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_55663800_55664200
transcript_51534.known	chr7	+	9856	13	FSM	ENSMUSG00000025326.13	ENSMUST00000200758.4	9856	13	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	78.4443805083151	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTTTGCTAGTATTTTG	NA	False	NA	9	True	NA	NA	NA	58878549	58961284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_58879020_58890714_58890782_58893097_58893218_58896920_58896966_58921694_58921985_58925515_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454_58938529_58953415_58953560_58954557
transcript_51535.known	chr7	+	4911	11	FSM	ENSMUSG00000025326.13	ENSMUST00000107537.5	4911	11	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	51.6876194073591	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAGATTTGTGTTCTTCAG	NA	False	NA	7	True	AATAAA	-7	NA	58878498	58956475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_58879020_58896920_58896966_58921694_58921985_58925515_58926763_58934427_58934573_58935801_58936008_58936615_58936781_58938153_58938310_58938454_58938529_58953415_58953560_58954557
transcript_5154.known	chr10	+	3069	10	FSM	ENSMUSG00000035620.16	ENSMUST00000038523.15	3069	10	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_9	27.2890336586822	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATCTGTGTGTGTGTTTC	NA	False	NA	22	True	AATAAA	-23	NA	84753479	84852311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_84753690_84761409_84761458_84783275_84783885_84793879_84793975_84805726_84805956_84806592_84806689_84815911_84816057_84827983_84828129_84837645_84837766_84850939
transcript_5155.known	chr10	+	2909	9	FSM	ENSMUSG00000035620.16	ENSMUST00000095385.5	2909	9	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_2	11.5325625946708	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCATCTGTGTGTGTGTTTC	NA	False	NA	22	True	AATAAA	-23	NA	84753519	84852311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_84753690_84761409_84761458_84783275_84783885_84793879_84793975_84805726_84805956_84806592_84806689_84815911_84816057_84827983_84828129_84850939
transcript_51552.known	chr7	-	1932	10	FSM	ENSMUSG00000102252.6	ENSMUST00000059305.17	1932	10	0	0	0	0	multi-exon	FALSE	canonical	3	1774	junction_5	121.666210044805	1321	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTATTCTCAGAAGTCAATG	NA	False	NA	NA	False	NA	NA	NA	59654859	59632242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_59633026_59633116_59633243_59634772_59634912_59635578_59635732_59636519_59636632_59637159_59637312_59638349_59638496_59645153_59645303_59649065_59649162_59654783
transcript_51556.known	chr7	-	2547	1	FSM	ENSMUSG00000070527.4	ENSMUST00000094340.4	2547	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGACTCTTTTTTTAAT	NA	False	NA	0	True	AATAAA	-18	NA	62069887	62067340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_62067300_62069900
transcript_51557.nnic	chr7	-	476	2	NNC	ENSMUSG00000052040.11	novel	6396	2	NA	NA	1194	2	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCTCAAAAAAAAAATTAAAA	NA	False	NA	NA	False	NA	NA	NA	63587469	63541128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_63541546_63587410
transcript_51559.known	chr7	+	2765	14	FSM	ENSMUSG00000030523.19	ENSMUST00000205434.2	2765	14	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_13	349.928648686554	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAATCTTAGATGAATTG	NA	False	NA	13	True	AATAAA	-18	NA	63835297	63874512	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585_63860687_63867237_63867409_63868855_63868991_63869989_63870041_63873438
transcript_51563.known	chr7	+	2575	11	FSM	ENSMUSG00000030523.19	ENSMUST00000205731.2	2575	11	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	225.867682504603	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTGGCTCTTTGACTCAT	NA	False	NA	NA	False	NA	NA	NA	63835302	63868483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585_63860687_63867237
transcript_51566.nic	chr7	+	2049	11	NIC	ENSMUSG00000030523.19	novel	1992	10	NA	NA	29	0	combination_of_known_junctions	FALSE	canonical	3	52	junction_1	301.433309373732	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGACTGAGTTTTCAGAC	NA	False	NA	26	True	ATTAAA	-23	NA	63835157	63861175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_63835372_63836134_63836221_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
transcript_5157.known	chr10	+	3616	3	FSM	ENSMUSG00000060935.7	ENSMUST00000095383.6	3616	3	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_1	7	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATGGAATGTTTCATAAAG	NA	False	NA	17	True	AATAAA	-17	NA	84938490	84953449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_84938862_84946662_84946730_84950271
transcript_51570.known	chr7	+	1992	10	FSM	ENSMUSG00000030523.19	ENSMUST00000205960.2	1992	10	0	0	0	0	multi-exon	FALSE	canonical	3	724	junction_5	65.6911967719673	370	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGACTGAGTTTTCAGAC	NA	False	NA	26	True	ATTAAA	-23	NA	63835128	63861175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63854169_63854342_63858023_63858199_63858616_63858741_63859704_63859778_63860585
transcript_51574.nic	chr7	+	1761	9	NIC	ENSMUSG00000030523.19	novel	1992	10	NA	NA	-19	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	271.883678022422	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGACTGAGTTTTCAGAC	NA	False	NA	26	True	ATTAAA	-23	NA	63835187	63861175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_63835372_63847024_63847105_63848910_63849107_63851634_63851849_63852753_63852879_63858023_63858199_63858616_63858741_63859704_63859778_63860585
transcript_5158.known	chr10	-	337	3	FSM	ENSMUSG00000049038.4	ENSMUST00000214193.2	337	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	23	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTCAGTGCATGTTCAG	NA	False	NA	NA	False	GATAAA	-21	NA	84963859	84956473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_84956679_84962231_84962330_84963825
transcript_51588.known	chr7	+	5205	16	FSM	ENSMUSG00000030522.15	ENSMUST00000032736.11	5205	16	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	5.98739416515139	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGTCTTGCCTTTGTTA	727	False	NA	5	True	AATAAA	-17	NA	63937417	63990554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_63937590_63938086_63938148_63947207_63947345_63949286_63949360_63950287_63950431_63957875_63957967_63963831_63964013_63967838_63967927_63968006_63968096_63969162_63969294_63970312_63970383_63970910_63970982_63976399_63976570_63983059_63983231_63986459_63986643_63987180
transcript_5159.known	chr10	-	1567	3	FSM	ENSMUSG00000049038.4	ENSMUST00000050813.4	1567	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	4.5	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATTATTCCAAAACATCAT	NA	False	NA	2	True	AATAAA	-23	NA	84963891	84955296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_84956679_84962231_84962351_84963825
transcript_51591.known	chr7	-	2248	11	FSM	ENSMUSG00000030521.12	ENSMUST00000032735.8	2248	11	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_4	61.7421250039226	176	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGAACGGGCTTATTTCATC	NA	False	NA	-3	True	NA	NA	NA	64042016	64026274	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_64026553_64026915_64027144_64028485_64028594_64030677_64030789_64032638_64032777_64034049_64034118_64035426_64035569_64037196_64037366_64038613_64038772_64039194_64039880_64041853
transcript_51597.known	chr7	-	2276	2	FSM	ENSMUSG00000030521.12	ENSMUST00000205516.2	2276	2	0	0	0	0	multi-exon	FALSE	canonical	3	724	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAGAAAGAAAGAAAGA	NA	False	NA	NA	False	NA	NA	NA	64041984	64037734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_64039880_64041853
transcript_51605.known	chr7	+	532	3	FSM	ENSMUSG00000033429.11	ENSMUST00000206194.2	532	3	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_2	103	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTATTTGTTATTTGA	NA	False	NA	21	True	ATTAAA	-22	NA	64042522	64061869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_64042592_64049916_64050093_64061582
transcript_51606.known	chr7	+	828	3	FSM	ENSMUSG00000033429.11	ENSMUST00000037205.11	828	3	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_2	55.5	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTTGTTATTTGAATTT	NA	False	NA	25	True	ATTAAA	-26	NA	64042392	64061873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_64042592_64049916_64050255_64061582
transcript_51608.nnic	chr7	+	590	3	NNC	ENSMUSG00000033429.11	novel	828	3	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	99	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTATTTGTTATTTGAATTT	NA	False	NA	25	True	ATTAAA	-26	NA	64042473	64061873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_64042592_64050073_64050255_64061582
transcript_51609.known	chr7	+	391	2	FSM	ENSMUSG00000033429.11	ENSMUST00000206882.2	391	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTATTTGTTATTTGA	NA	False	NA	21	True	ATTAAA	-22	NA	64042487	64061869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_64042592_64061582
transcript_5161.known	chr10	+	952	1	FSM	ENSMUSG00000050490.8	ENSMUST00000079684.7	952	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAAAAATTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	85149351	85150303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_85149400_85150300
transcript_51611.known	chr7	+	3192	19	FSM	ENSMUSG00000030515.10	ENSMUST00000032728.9	3192	19	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_9	7.60035736651675	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCGGTATGTTCCATTGT	NA	False	NA	11	True	AATAAA	-24	NA	65294645	65341839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_65294963_65296000_65296070_65297225_65297417_65302007_65302132_65305431_65305554_65308607_65308726_65310866_65310932_65312048_65312128_65313620_65313768_65314628_65314728_65325711_65325879_65327743_65327907_65332514_65332653_65333555_65333634_65333809_65333911_65336185_65336291_65338626_65338700_65339715_65339831_65340918
transcript_51612.known	chr7	+	1003	6	FSM	ENSMUSG00000078681.11	ENSMUST00000107495.5	1003	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_2	226.65709783724	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAACTTTTTATTTGCCTG	NA	False	NA	28	True	AATAAA	-28	NA	65343164	65351661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_65343318_65343598_65343692_65344890_65345076_65347443_65347619_65348839_65348916_65351340
transcript_51613.known	chr7	+	905	6	FSM	ENSMUSG00000078681.11	ENSMUST00000206517.2	905	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	235.550079600921	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGACAACCCAGAACTTT	NA	False	NA	17	True	AATAAA	-17	NA	65343224	65351650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_65343318_65343598_65343692_65344917_65345076_65347443_65347619_65348839_65348916_65351340
transcript_51614.known	chr7	+	908	5	FSM	ENSMUSG00000078681.11	ENSMUST00000032726.14	908	5	0	0	0	0	multi-exon	FALSE	canonical	3	473	junction_3	21.6333076527839	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGACAACCCAGAACTTT	NA	False	NA	17	True	AATAAA	-17	NA	65343155	65351650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_65343318_65344890_65345076_65347443_65347619_65348839_65348916_65351340
transcript_51615.nic	chr7	+	836	5	NIC	ENSMUSG00000078681.11	novel	905	6	NA	NA	6	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	208.078711068672	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCACGACAACCCAGAACTTT	NA	False	NA	17	True	AATAAA	-17	NA	65343200	65351650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_65343318_65344917_65345076_65347443_65347619_65348839_65348916_65351340
transcript_51618.known	chr7	+	1248	9	FSM	ENSMUSG00000030512.14	ENSMUST00000153609.8	1248	9	0	0	0	0	multi-exon	FALSE	canonical	3	2395	junction_6	274.913622798144	2120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTGCTGTGTATCTGCA	NA	False	NA	23	True	AATAAA	-23	NA	65710085	65724335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65719275_65719866_65719947_65720337_65720414_65720979_65721074_65724069
transcript_5162.known	chr10	+	5788	17	FSM	ENSMUSG00000020042.16	ENSMUST00000105307.8	5788	17	0	0	0	0	multi-exon	TRUE	canonical	3	26	junction_1	8.15379512865022	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGCATCCTCTTTATGGT	NA	False	NA	13	True	ATTAAA	-18	NA	85222677	85496156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_85224343_85382305_85382456_85397368_85397574_85434588_85434742_85460766_85460933_85463060_85463151_85465075_85465178_85466951_85467046_85467156_85467293_85467952_85468174_85469547_85469727_85476366_85476473_85481351_85481455_85483575_85483658_85487470_85487540_85490341_85490456_85494003
transcript_51626.known	chr7	+	955	8	FSM	ENSMUSG00000030512.14	ENSMUST00000032723.9	955	8	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_5	1022.69418095299	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGGACTGTGTGCTGTGT	NA	False	NA	16	True	AATAAA	-16	NA	65710291	65724328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65719275_65720337_65720414_65720979_65721074_65724069
transcript_5163.known	chr10	+	2572	15	FSM	ENSMUSG00000001785.14	ENSMUST00000001836.11	2572	15	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_1	18.5957258639765	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATTCACCTCACTTTGACT	NA	False	NA	8	True	AATAAA	-19	NA	85707694	85724960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_85707879_85710141_85710201_85710312_85710498_85712161_85712248_85712349_85712447_85714342_85714454_85715125_85715257_85715693_85715756_85717866_85717964_85718734_85718797_85720326_85720439_85721473_85721565_85721660_85721783_85723086_85723193_85723893
transcript_51636.known	chr7	+	2026	6	FSM	ENSMUSG00000030512.14	ENSMUST00000139082.3	2026	6	0	0	0	0	multi-exon	FALSE	canonical	3	2772	junction_5	101.577556576244	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTGCCAGGACAGCCAAGG	NA	False	NA	NA	False	NA	NA	NA	65710311	65721360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_65710441_65711871_65712020_65713514_65713594_65718914_65718962_65719171_65720414_65720979
transcript_51640.known	chr7	+	1157	6	FSM	ENSMUSG00000075701.11	ENSMUST00000206575.2	1157	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	154.225808475754	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCACAGTCTCTGGTTTTTC	NA	False	NA	5	True	AGTAAA	-14	NA	65729425	65739151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_65729538_65730079_65730215_65733147_65733255_65736694_65736785_65736940_65737017_65738514
transcript_51642.known	chr7	+	897	6	FSM	ENSMUSG00000075701.11	ENSMUST00000205279.2	897	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	173.168819364226	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGATGATACTTTGGG	NA	False	NA	NA	False	CATAAA	-6	NA	65729434	65738868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_65729567_65730079_65730215_65733147_65733255_65736694_65736785_65736940_65737020_65738514
transcript_51643.known	chr7	-	3443	13	FSM	ENSMUSG00000015134.16	ENSMUST00000015278.15	3443	13	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	4.11214326382511	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATTGTTTTTCATTGGAG	NA	False	NA	0	True	AATAAA	-19	NA	66077265	66040637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_66042510_66048435_66048511_66049825_66049984_66051718_66051884_66055721_66055907_66057548_66057652_66058913_66059028_66061249_66061379_66062105_66062168_66062648_66062779_66068850_66068992_66071958_66072064_66077061
transcript_51644.nic	chr7	-	1520	7	ISM	ENSMUSG00000015134.16	ENSMUST00000015278.15	3443	13	20	17621	20	0	5prime_fragment	FALSE	canonical	3	14	junction_3	2.80871659105879	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGACTCTGGCCTACAACC	NA	False	NA	NA	False	NA	NA	NA	66077245	66058258	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_66059028_66061249_66061379_66062105_66062168_66062648_66062779_66068850_66068992_66071958_66072064_66077061
transcript_51650.known	chr7	+	5088	8	FSM	ENSMUSG00000053091.17	ENSMUST00000130161.9	5088	8	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	19.3454102556442	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCAAGTGTCCTTGTGAT	NA	False	NA	NA	False	NA	NA	NA	66339705	66367004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_66339772_66345923_66346055_66357787_66358302_66358386_66358477_66359041_66359184_66359977_66360495_66361620_66361793_66363548
transcript_51655.nic	chr7	+	1512	3	ISM	ENSMUSG00000053091.17	ENSMUST00000128486.8	1419	5	-110	667	-50	-667	intron_retention	FALSE	canonical	3	70	junction_2	8	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGATAGTTTTTTATTACA	NA	False	NA	NA	False	AGTAAA	-18	NA	66339586	66358983	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_66339772_66345923_66346055_66357787
transcript_51656.nnic	chr7	+	1420	3	NNC	ENSMUSG00000053091.17	novel	1419	5	NA	NA	4	-667	intron_retention	FALSE	canonical	0	0	junction_2	43	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGATAGTTTTTTATTACA	NA	False	NA	NA	False	AGTAAA	-18	NA	66339700	66358983	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_66339772_66345923_66346077_66357787
transcript_51657.known	chr7	+	453	2	FSM	ENSMUSG00000053091.17	ENSMUST00000153007.2	453	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTCCTGGAGCACAGGAGT	NA	False	NA	NA	False	NA	NA	NA	66339636	66358105	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_66339772_66357787
transcript_51658.known	chr7	+	2647	8	FSM	ENSMUSG00000053091.17	ENSMUST00000077967.13	2647	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	18.4113984215413	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATGCGTGTCTGGGTCT	NA	False	NA	11	True	AATAAA	-17	NA	66339705	66364492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_66339772_66345923_66346055_66357787_66358302_66358386_66358477_66359041_66359184_66359906_66360495_66361620_66361793_66363548
transcript_51659.known	chr7	+	551	3	FSM	ENSMUSG00000043831.13	ENSMUST00000208698.2	551	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	14	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTCTGTGGTTTATCTAAA	NA	False	NA	NA	False	ATTAAA	-31	NA	66872361	66874375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_66872378_66873356_66873640_66874123
transcript_51660.known	chr7	+	2898	3	FSM	ENSMUSG00000043831.13	ENSMUST00000058771.13	2898	3	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	19.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGAAACATGATTCTCCCT	NA	False	NA	NA	False	AATAAA	-16	NA	66872355	66878204	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_66872378_66873356_66873640_66875611
transcript_51664.known	chr7	-	2923	10	FSM	ENSMUSG00000030556.14	ENSMUST00000053950.10	2923	10	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	16.1894646431591	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGTCTTCTCTCCTCCTGT	572	False	NA	-2	True	AATAAA	-16	NA	67294979	67163157	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209813_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
transcript_51665.nic	chr7	-	1444	10	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	-43	-468	combination_of_known_junctions	FALSE	canonical	3	41	junction_5	13.5026289164118	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGTGTTGTCTTCTGTGT	492	False	NA	NA	False	AATACA	-17	NA	67295059	67164621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209718_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
transcript_51667.known	chr7	-	2761	9	FSM	ENSMUSG00000030556.14	ENSMUST00000187953.8	2761	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_7	25.6709953059869	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTGTCTTCTCTCCTCCT	596	False	NA	-4	True	AATAAA	-14	NA	67294955	67163159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67209605_67209718_67267740_67267879_67268821_67268860_67290851_67291089_67294925
transcript_51668.nic	chr7	-	1260	9	NIC	ENSMUSG00000030556.14	novel	2923	10	NA	NA	-8	-468	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	20.648471493067	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACGTGTTGTCTTCTGTGT	564	False	NA	NA	False	AATACA	-17	NA	67294987	67164621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_67164927_67179333_67179494_67181362_67181539_67195113_67195217_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
transcript_51672.known	chr7	-	1817	6	FSM	ENSMUSG00000030556.14	ENSMUST00000032775.12	1817	6	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	30.7662152368471	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATTTTGTTCTGGGCACA	596	False	NA	NA	False	AATAAA	-16	NA	67294955	67244146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_67245480_67267740_67267879_67268821_67268860_67278042_67278084_67290851_67291089_67294925
transcript_51673.known	chr7	-	554	4	FSM	ENSMUSG00000030556.14	ENSMUST00000191386.2	554	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	34.1792659696229	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCTGGAGGCATGATCAC	NA	False	NA	NA	False	NA	NA	NA	67269746	67245148	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_67245480_67267740_67267879_67268821_67268860_67269699
transcript_51675.known	chr7	+	2216	11	FSM	ENSMUSG00000030555.17	ENSMUST00000107471.8	2216	11	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	12.2429571591181	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTTTGTGTGTTTGAAA	NA	False	NA	13	True	AATAAA	-18	NA	67297172	67376324	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_67297594_67312074_67312275_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
transcript_51676.known	chr7	+	1915	11	FSM	ENSMUSG00000030555.17	ENSMUST00000107470.2	1915	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	23.6822718504792	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGCAGTTTGTGTGTTTG	NA	False	NA	10	True	AATAAA	-15	NA	67305194	67376321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_67305318_67312074_67312275_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
transcript_51677.known	chr7	+	1991	10	FSM	ENSMUSG00000030555.17	ENSMUST00000126093.8	1991	10	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_1	24.6671671620895	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGTTTGTGTGTTTGAAA	NA	False	NA	13	True	AATAAA	-18	NA	67297197	67376324	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_67297594_67316910_67317035_67319445_67319597_67319799_67319926_67328641_67328820_67347971_67348078_67359071_67359200_67361101_67361252_67374981_67375065_67375775
transcript_51682.known	chr7	+	2815	9	FSM	ENSMUSG00000074071.12	ENSMUST00000210558.2	2815	9	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_5	20.4328167417025	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGGACTTTCAAGGTGCCCA	NA	False	NA	58	True	AATAAA	-29	NA	67925742	68012840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_67925790_67950580_67950712_67954299_67954400_67971567_67971654_67978969_67979148_67999981_68000165_68003356_68003492_68007932_68008037_68010989
transcript_51686.nic	chr7	+	2675	8	NIC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	-43	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_4	44.7788215247215	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTAGGACTTTCAAGGT	NA	False	NA	53	True	AATAAA	-24	NA	67925699	68012835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_67925790_67950580_67950712_67954299_67954400_67971567_67971654_67999981_68000165_68003356_68003492_68007932_68008037_68010989
transcript_51688.nnic	chr7	+	2767	8	NIC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	-43	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_3	51.6048565978997	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTAGGACTTTCAAGGT	NA	False	NA	53	True	AATAAA	-24	NA	67925699	68012835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_67925790_67950580_67950712_67954299_67954400_67978969_67979148_67999981_68000165_68003356_68003492_68007932_68008037_68010989
transcript_51692.nnic	chr7	+	2589	7	NIC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	-43	0	combination_of_known_splicesites	FALSE	canonical	2	10	junction_3	52.588813766174	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTAGGACTTTCAAGGT	NA	False	NA	53	True	AATAAA	-24	NA	67925699	68012835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_67925790_67950580_67950712_67954299_67954400_67999981_68000165_68003356_68003492_68007932_68008037_68010989
transcript_51694.nnic	chr7	+	571	5	NNC	ENSMUSG00000074071.12	novel	2815	9	NA	NA	-43	-28169	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_4	58.8451357377991	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTGCCTTGGTCATGGTG	NA	False	NA	NA	False	NA	NA	NA	67925699	67975225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_67925790_67950580_67950712_67954299_67954400_67971567_67971654_67975061
transcript_51696.known	chr7	-	1129	5	FSM	ENSMUSG00000042659.16	ENSMUST00000118110.3	1129	5	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_4	68.2289344779764	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTGGCCTTCACTGTTAAA	NA	False	NA	69	True	NA	NA	NA	68398936	68391258	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_68391650_68392319_68392423_68394529_68394678_68394892_68394960_68398516
transcript_51697.known	chr7	-	3905	8	FSM	ENSMUSG00000042659.16	ENSMUST00000048068.15	3905	8	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_1	213.33809518495	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGGGTGGCTCATTTTTT	NA	False	NA	-3	True	AATAAA	-16	NA	68398989	68386742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_68389282_68389632_68389788_68390702_68390866_68391392_68391650_68392319_68392423_68394529_68394678_68394892_68394960_68398516
transcript_51698.known	chr7	-	555	1	FSM	ENSMUSG00000081895.4	ENSMUST00000119383.2	555	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	26	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTCAGCATAAAATAAAGGC	7688	False	NA	NA	False	AAGAAA	-34	NA	72299059	72298504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_72298500_72299100
transcript_51704.known	chr7	-	519	5	FSM	ENSMUSG00000101970.9	ENSMUST00000187421.7	519	5	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_4	79.8780320238299	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGATTCTTTTAATGTGGA	NA	False	NA	NA	False	NA	NA	NA	73207721	73194011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_73194131_73199344_73199401_73205002_73205082_73205602_73205669_73207522
transcript_51705.known	chr7	-	5140	5	FSM	ENSMUSG00000101970.9	ENSMUST00000184587.5	5140	5	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_4	46.3384289763906	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTTTTGTTGTATGACT	NA	False	NA	NA	False	AATAAA	-10	NA	73208143	73189548	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_73194131_73199344_73199401_73205002_73205082_73205602_73205669_73207786
transcript_51706.nic	chr7	+	1263	4	ISM	ENSMUSG00000066406.17	ENSMUST00000208187.2	1381	6	-4	22925	-4	0	5prime_fragment	FALSE	canonical	3	13	junction_3	3.29983164553722	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAATAACATCCTGTTTCT	NA	False	NA	NA	False	AATAAA	-14	NA	75105300	75230124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_75105497_75184555_75184600_75219631_75219780_75229249
transcript_51708.known	chr7	-	656	3	FSM	ENSMUSG00000097415.3	ENSMUST00000181224.2	656	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	6.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGAGGTGTTGTGTGAC	NA	False	NA	NA	False	NA	NA	NA	75431847	75419509	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_75419986_75430372_75430505_75431799
transcript_51709.known	chr7	+	3385	3	FSM	ENSMUSG00000055652.15	ENSMUST00000092073.11	3385	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	16	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTCCTTTGGGTTCTGATT	NA	False	NA	16	True	AATAAA	-17	NA	75498085	75523878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_75498233_75515084_75516890_75522445
transcript_5171.known	chr10	-	2009	12	FSM	ENSMUSG00000001783.4	ENSMUST00000001834.4	2009	12	0	0	0	0	multi-exon	FALSE	canonical	3	1317	junction_1	96.7988457003782	1055	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTTTCTTCTCTTCCTGTG	NA	False	NA	-12	True	ATTAAA	-17	NA	85793687	85774500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_85774984_85777762_85777883_85778351_85778463_85779072_85779262_85779678_85779855_85782054_85782215_85783040_85783198_85785329_85785487_85787218_85787319_85789300_85789369_85791582_85791662_85793478
transcript_51710.known	chr7	+	3403	3	FSM	ENSMUSG00000055652.15	ENSMUST00000171155.4	3403	3	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTGGGTTCTGATTC	NA	False	NA	17	True	AATAAA	-18	NA	75498057	75523879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_75498222_75515084_75516890_75522445
transcript_51711.known	chr7	+	2299	2	FSM	ENSMUSG00000055652.15	ENSMUST00000206019.2	2299	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGGCTGAAGGAGAAGCA	NA	False	NA	NA	False	AATAAA	-18	NA	75498088	75517239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_75498233_75515084
transcript_51712.known	chr7	+	905	2	FSM	ENSMUSG00000055652.15	ENSMUST00000206418.2	905	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTCCCATCATGCCTGCTA	NA	False	NA	NA	False	NA	NA	NA	75498144	75523273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_75498222_75522445
transcript_51713.nic	chr7	+	2282	2	ISM	ENSMUSG00000055652.15	ENSMUST00000171155.4	3403	3	54	6623	0	17	5prime_fragment	FALSE	canonical	3	36	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAGTGACTTATCGGGTGT	NA	False	NA	NA	False	AATAAA	-35	NA	75498111	75517256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_75498222_75515084
transcript_51714.known	chr7	+	825	6	FSM	ENSMUSG00000030611.11	ENSMUST00000133553.8	825	6	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	143.488814895099	230	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAGCTGTGAGTTTTTGTTC	NA	False	NA	3	True	AATAAA	-16	NA	78433103	78442737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_78433172_78433320_78433435_78438422_78438522_78440384_78440515_78441621_78441688_78442389
transcript_51716.known	chr7	-	1134	4	FSM	ENSMUSG00000030612.7	ENSMUST00000032841.7	1134	4	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_2	24.7296493213219	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAACAGACCTACTGGGC	NA	False	NA	NA	False	AGTAAA	-18	NA	78432837	78424983	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_78425474_78430185_78430360_78431147_78431335_78432554
transcript_51720.known	chr7	-	2269	5	FSM	ENSMUSG00000030610.14	ENSMUST00000032839.13	2269	5	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_2	8.89873586527884	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACACTGTCTCTTCCTTGA	NA	False	NA	-3	True	AATAAA	-18	NA	78497011	78477221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_78477861_78483858_78484051_78489752_78489941_78492919_78494013_78496854
transcript_51726.known	chr7	+	4956	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107425.8	4956	4	0	0	0	0	multi-exon	FALSE	canonical	3	272	junction_1	184.819431397844	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTGTAATCTGATGGAAT	NA	False	NA	2	True	NA	NA	NA	78545674	78560957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_78545763_78551977_78552579_78555590_78555792_78556891
transcript_51727.known	chr7	+	2007	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107421.8	2007	4	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_1	165.023903992388	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGAACTGGTCCTTTCTGG	NA	False	NA	NA	False	AATAAA	-18	NA	78545681	78558129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_78545763_78552091_78552579_78555590_78555792_78556891
transcript_51728.known	chr7	+	2230	4	FSM	ENSMUSG00000030609.19	ENSMUST00000107423.2	2230	4	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	306.901721511409	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGTGAACTGGTCCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	78545756	78558126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_78545950_78551977_78552579_78555590_78555792_78556891
transcript_51731.known	chr7	-	3358	5	FSM	ENSMUSG00000030606.9	ENSMUST00000206092.2	3358	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	1.87082869338697	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATAGATCTCTTCCAATGTC	2275	False	NA	NA	False	AATAGA	-44	NA	78780766	78764849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_78767242_78767596_78767900_78771394_78771764_78773117_78773300_78780654
transcript_51732.known	chr7	-	2125	10	FSM	ENSMUSG00000030605.16	ENSMUST00000032825.14	2125	10	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_6	379.595691346581	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCCTCTGTGCCTCCTCATT	NA	False	NA	-6	True	AATACA	-18	NA	78798808	78783516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78793025_78793137_78794994_78795127_78795369_78795493_78798642
transcript_51733.known	chr7	-	2008	9	FSM	ENSMUSG00000030605.16	ENSMUST00000107409.5	2008	9	0	0	0	0	multi-exon	TRUE	canonical	3	790	junction_6	144.155948541848	661	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTCTGTGCCTCCTCATTG	NA	False	NA	-5	True	AATACA	-19	NA	78798801	78783515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_78784295_78784399_78784550_78786404_78786590_78791392_78791538_78792149_78792303_78792616_78792799_78794994_78795127_78795369_78795493_78798642
transcript_51737.nnic	chr7	-	1011	3	NNC	ENSMUSG00000108387.2	novel	239	2	NA	NA	95	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	6	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCCTCTGTAATCTGC	NA	False	NA	NA	False	AATAAA	-19	NA	78922688	78921435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_78922092_78922195_78922308_78922445
transcript_51738.nnic	chr7	-	1145	2	NNC	ENSMUSG00000108387.2	novel	239	2	NA	NA	99	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	0	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCCTCTGTAATCTGC	NA	False	NA	NA	False	AATAAA	-19	NA	78922684	78921435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_78922092_78922195
transcript_51739.known	chr7	+	6877	11	FSM	ENSMUSG00000039202.13	ENSMUST00000037315.13	6877	11	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	6.39140047250992	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTGTATGTGCTCTGTG	2722	False	NA	22	True	ATTAAA	-17	NA	78922946	79015256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_78923088_78944255_78944356_78946755_78946956_78973216_78973393_78975181_78975350_78998007_78998192_79000498_79000592_79003737_79003849_79005549_79005620_79007812_79007898_79009707
transcript_51744.known	chr7	+	4645	38	FSM	ENSMUSG00000039187.17	ENSMUST00000036865.13	4645	38	0	0	0	0	multi-exon	TRUE	canonical	3	260	junction_14	37.7798783892034	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTGGTGTAGTTTTGAAAAT	NA	False	NA	12	True	AATAAA	-13	NA	79042059	79100012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_79042140_79045640_79045744_79048883_79048957_79051572_79051704_79052016_79052174_79052258_79052317_79054890_79054933_79055914_79056039_79057071_79057158_79058887_79059015_79060908_79061002_79062366_79062504_79067583_79067765_79070010_79070099_79073953_79074082_79074641_79074713_79075854_79075970_79076874_79076998_79080177_79080247_79081861_79081964_79082930_79083108_79083180_79083303_79083883_79084049_79084944_79085125_79087981_79088149_79089365_79089443_79090378_79090496_79093488_79093541_79093695_79093824_79093905_79093975_79094148_79094258_79094422_79094611_79095284_79095339_79095417_79095478_79097997_79098061_79098567_79098664_79098820_79098929_79099387
transcript_51746.known	chr7	-	7837	23	FSM	ENSMUSG00000039176.18	ENSMUST00000073889.14	7837	23	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_20	45.8324292422727	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTTTTGATCATGGTG	NA	False	NA	2	True	NA	NA	NA	79116110	79095978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_79099786_79100232_79100394_79101289_79101499_79101607_79101777_79101854_79101978_79103452_79103700_79103786_79103923_79104341_79104460_79104558_79104613_79105182_79105344_79105788_79105897_79106182_79106261_79106455_79106577_79107921_79108159_79108921_79109049_79109184_79109334_79109436_79109620_79109805_79109886_79110010_79110158_79110263_79110429_79111445_79111642_79114351_79115120_79115817
transcript_51751.nnic	chr7	-	715	3	Antisense	novelGene_ENSMUSG00000039187.17_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	15	junction_2	2	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACTGATTTGTATATACT	NA	False	NA	NA	False	NA	NA	NA	79048195	79046167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr7_-_79046493_79047383_79047471_79047892
transcript_51759.known	chr7	+	1452	1	FSM	ENSMUSG00000046591.11	ENSMUST00000205750.2	1452	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TCAAAAAAAAAAAAAAAAAA	1950	False	NA	NA	False	NA	NA	NA	79309969	79311421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_79310000_79311400
transcript_51760.known	chr7	-	2241	3	FSM	ENSMUSG00000030545.10	ENSMUST00000032761.8	2241	3	0	0	0	0	multi-exon	TRUE	canonical	3	20	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTGCGTCTGTGAGTGTG	NA	False	NA	NA	False	AATAAA	-18	NA	79392828	79385704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_79387659_79389912_79390029_79392657
transcript_51763.known	chr7	+	1944	2	FSM	ENSMUSG00000030543.11	ENSMUST00000107394.3	1944	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGCTTCTGATTTTT	NA	False	NA	NA	False	ATTAAA	-21	NA	79460474	79463187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_79461508_79462276
transcript_51766.known	chr7	-	5813	6	FSM	ENSMUSG00000063801.8	ENSMUST00000075657.8	5813	6	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_1	30.5653398476117	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTGTGGCCATGCATTTC	NA	False	NA	-2	True	AATAAA	-14	NA	79570397	79525072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_79530361_79532213_79532322_79559582_79559655_79564894_79565007_79565763_79565856_79570256
transcript_51767.known	chr7	-	2277	6	FSM	ENSMUSG00000039043.6	ENSMUST00000048731.6	2277	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	5.76194411635517	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGACTGAGGCTTTGAGG	9893	False	NA	NA	False	NA	NA	NA	79585107	79575108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_79576599_79577373_79577538_79577919_79578127_79579320_79579454_79581550_79581627_79584900
transcript_51769.known	chr7	+	5871	5	FSM	ENSMUSG00000048897.16	ENSMUST00000164056.9	5871	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_4	112.192635676322	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTAGGCAAGCCTGAGCGGG	NA	False	NA	NA	False	NA	NA	NA	79674561	79743921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_79674735_79730796_79732289_79735698_79735891_79736181_79736357_79740082
transcript_51771.nic	chr7	+	2344	4	ISM	ENSMUSG00000048897.16	ENSMUST00000166250.8	3606	6	-94	4984	-74	0	5prime_fragment	TRUE	canonical	3	198	junction_1	67.6214955961983	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTACACGTTGAGTGCTGT	NA	False	NA	1	True	AATAAA	-9	NA	79674487	79736594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_79674735_79730796_79732289_79735698_79735891_79736181
transcript_51775.known	chr7	-	1745	11	FSM	ENSMUSG00000030541.17	ENSMUST00000107384.10	1745	11	0	0	0	0	multi-exon	FALSE	canonical	3	1495	junction_5	201.26112391617	945	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTCTTGATGTGTTTGTCC	NA	False	NA	-5	True	AAAAAG	-13	NA	79765140	79744593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_79744952_79745368_79745462_79745546_79745645_79745770_79745884_79747551_79747704_79747883_79748021_79748518_79748663_79748745_79748907_79750490_79750657_79752869_79752962_79764909
transcript_51785.known	chr7	-	702	5	FSM	ENSMUSG00000030538.16	ENSMUST00000071457.12	702	5	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_4	297.709904941035	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTTCCTTGTATGATGGT	2240	False	NA	-12	True	AATAAA	-15	NA	79882372	79876906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79882257
transcript_51786.known	chr7	-	1016	1	FSM	ENSMUSG00000030538.16	ENSMUST00000206618.2	1016	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGCTAAGAAT	2283	False	NA	NA	False	NA	NA	NA	79882329	79881313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_79881300_79882300
transcript_51787.known	chr7	-	1047	7	FSM	ENSMUSG00000030538.16	ENSMUST00000065163.15	1047	7	0	0	0	0	multi-exon	FALSE	canonical	3	721	junction_2	48.5546656414763	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGGTAGCAGCAGGACT	2051	False	NA	0	True	AATAAA	-27	NA	79882561	79876894	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_79877135_79877741_79877831_79877909_79878029_79878145_79878297_79880063_79880173_79882091_79882127_79882257
transcript_51788.known	chr7	+	4189	2	FSM	ENSMUSG00000050973.12	ENSMUST00000062915.9	4189	2	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	0	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAAAAACAAAAACA	NA	False	NA	NA	False	NA	NA	NA	79882612	79891809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_79882954_79887961
transcript_51789.nnic	chr7	+	969	4	NNC	ENSMUSG00000045467.14	novel	3010	15	NA	NA	9304	0	at_least_one_novel_splicesite	TRUE	canonical	2	7	junction_1	4.64279609239471	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGCCGTTTTCACTATT	NA	False	NA	NA	False	AGTAAA	-20	NA	79906439	79908943	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_79906489_79906592_79906779_79907924_79908106_79908390
transcript_51790.nic	chr7	+	1076	3	ISM	ENSMUSG00000045467.14	ENSMUST00000107381.8	2392	13	10134	0	9301	0	3prime_fragment	FALSE	canonical	2	15	junction_2	1.5	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGCCGTTTTCACTATT	NA	False	NA	NA	False	AGTAAA	-20	NA	79906436	79908943	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_79906779_79907924_79908106_79908390
transcript_51792.known	chr7	+	1317	3	FSM	ENSMUSG00000047084.9	ENSMUST00000117989.2	1317	3	0	0	0	0	multi-exon	FALSE	canonical	3	448	junction_2	14	389	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGTTGCTTGGTTCTCT	NA	False	NA	13	True	AATAAA	-13	NA	79910962	79915122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_79911172_79911568_79911680_79914125
transcript_51793.known	chr7	+	1709	2	FSM	ENSMUSG00000047084.9	ENSMUST00000138005.2	1709	2	0	0	0	0	multi-exon	FALSE	canonical	3	448	junction_1	0	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTGTTGCTTGGTTCTCT	NA	False	NA	13	True	AATAAA	-13	NA	79910967	79915122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_79911680_79914125
transcript_51795.known	chr7	+	2574	23	FSM	ENSMUSG00000030534.14	ENSMUST00000032749.12	2574	23	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_6	14.9188576657057	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTTTGTTTTTTGTTTGT	NA	False	NA	17	True	AATAAA	-21	NA	79919396	79941327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_79919828_79923976_79924058_79924371_79924434_79925793_79925844_79926145_79926214_79929719_79929766_79932232_79932328_79933175_79933281_79933727_79933825_79934031_79934110_79934289_79934364_79934765_79934853_79934997_79935089_79935303_79935379_79935581_79935647_79935758_79935814_79936855_79936903_79937525_79937659_79938147_79938222_79939729_79939832_79940015_79940092_79940195_79940313_79940862
transcript_51800.nic	chr7	+	3016	15	NIC	ENSMUSG00000038943.17	novel	3008	15	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_13	288.475240333922	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	13	True	AATAAA	-23	NA	79944167	79966002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79963274_79963317_79964861
transcript_51801.known	chr7	+	3008	15	FSM	ENSMUSG00000038943.17	ENSMUST00000174172.8	3008	15	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_13	238.868890688544	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTACACTGTTTTGTCTTC	NA	False	NA	13	True	AATAAA	-23	NA	79944252	79966002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962957_79963274_79963317_79964861
transcript_51802.known	chr7	+	2912	14	FSM	ENSMUSG00000038943.17	ENSMUST00000173824.8	2912	14	0	0	0	0	multi-exon	FALSE	canonical	3	387	junction_13	177.415201846273	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATACTACACTGTTTTGTC	NA	False	NA	10	True	AATAAA	-20	NA	79944226	79965999	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960929_79961964_79962076_79962779_79962880_79964861
transcript_51803.known	chr7	+	3016	14	FSM	ENSMUSG00000038943.17	ENSMUST00000047558.14	3016	14	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_11	336.527023981466	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTGTTTTGTCTTCAATGG	NA	False	NA	18	True	AATAAA	-28	NA	79944198	79966007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108_79954343_79954428_79954600_79955665_79955816_79956122_79956271_79957306_79957444_79959140_79959237_79960488_79960636_79960817_79960920_79961964_79962076_79962779_79962957_79964861
transcript_51828.known	chr7	+	595	4	FSM	ENSMUSG00000038943.17	ENSMUST00000206178.2	595	4	0	0	0	0	multi-exon	FALSE	canonical	3	974	junction_3	48.0578355271599	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCTGAAACCTCATAGACCT	NA	False	NA	NA	False	NA	NA	NA	79944260	79954368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_79944340_79950048_79950182_79950784_79950908_79954108
transcript_51831.known	chr7	+	1510	4	FSM	ENSMUSG00000030532.7	ENSMUST00000032747.7	1510	4	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	13.490737563232	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCAGAAGGCTTCTTAAATC	NA	False	NA	NA	False	AATAAA	-21	NA	79992851	79996462	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_79992998_79993286_79993343_79993463_79993705_79995395
transcript_51835.nic	chr7	-	792	2	ISM	ENSMUSG00000030533.17	ENSMUST00000238999.2	3180	20	13953	-4	13348	0	3prime_fragment	FALSE	canonical	3	89	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATCTGTTTGTTGTTGTAG	NA	False	NA	NA	False	AATAAA	-16	NA	79975966	79975039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_79975626_79975760
transcript_51836.known	chr7	+	1471	3	FSM	ENSMUSG00000030532.7	ENSMUST00000205744.2	1471	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	57	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGCTGTTCTTCCTTCTCTG	NA	False	NA	17	True	AATAAA	-22	NA	79992871	79995850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_79993343_79993463_79993843_79995229
transcript_51838.nic	chr7	-	953	5	ISM	ENSMUSG00000053158.11	ENSMUST00000206728.2	2707	18	7366	-10	383	0	3prime_fragment	FALSE	canonical	2	10	junction_1	2.77263412660235	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCGGGTGATATTGACATGTG	NA	False	NA	-9	True	AATAAA	-15	NA	80029801	80027510	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_80027823_80028289_80028413_80028525_80028684_80029358_80029483_80029565
transcript_51839.known	chr7	-	4598	22	FSM	ENSMUSG00000030528.13	ENSMUST00000081314.11	4598	22	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_6	41.4509518092853	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAAGGGAAGGCAGCATGGG	NA	False	NA	66	True	NA	NA	NA	80184867	80104740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_80105185_80108560_80108745_80110477_80110601_80113520_80113714_80114485_80114686_80116522_80116662_80119337_80119529_80123776_80123973_80130082_80130244_80131151_80131259_80143849_80143999_80144180_80144280_80145737_80145852_80147152_80147272_80149500_80149693_80152030_80152702_80152987_80153121_80155566_80155695_80159151_80159312_80162526_80163243_80164336_80164439_80184790
transcript_51842.known	chr7	-	7444	38	FSM	ENSMUSG00000030536.11	ENSMUST00000167377.3	7444	38	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_37	55.7931586507513	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTATTTTTCTTGGTT	NA	False	NA	-9	True	AATAAA	-19	NA	80453164	80361330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_80363694_80366758_80366868_80370616_80370740_80372709_80372877_80373526_80373740_80375334_80375423_80375713_80375850_80376486_80376590_80377700_80377834_80378596_80378830_80379816_80379902_80379989_80380131_80383733_80383959_80385221_80385386_80386009_80386166_80387861_80388071_80388420_80388491_80388580_80388653_80388742_80388827_80389537_80389709_80392783_80392927_80393540_80393709_80393865_80393957_80398571_80398736_80401073_80401199_80401616_80401778_80401937_80402102_80405927_80406013_80407151_80407316_80407921_80408007_80409505_80409685_80410562_80410677_80412245_80412314_80415042_80415120_80416632_80416711_80418056_80418214_80449597_80449698_80452888
transcript_51845.known	chr7	+	1582	3	FSM	ENSMUSG00000038797.14	ENSMUST00000147125.2	1582	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGCTTCAGCCAGAGCTC	2921	False	NA	NA	False	NA	NA	NA	80510700	80525636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_80510826_80512915_80513420_80524683
transcript_51847.known	chr7	-	2114	8	FSM	ENSMUSG00000025722.17	ENSMUST00000026816.15	2114	8	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_7	16.071269840486	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTTTGTGTGTATGAGT	NA	False	NA	-3	True	AATAAA	-16	NA	80551017	80540470	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391_80550460_80550932
transcript_51849.nic	chr7	-	1830	8	NIC	ENSMUSG00000025722.17	novel	2549	7	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	8	junction_7	45.3332332932069	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCAATTAGCAATTTACT	NA	False	NA	-5	True	AATAAA	-22	NA	80550980	80541006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391_80550460_80550643
transcript_51851.nic	chr7	-	1616	8	NIC	ENSMUSG00000025722.17	novel	2114	8	NA	NA	-21	2	combination_of_known_junctions	FALSE	canonical	1	1	junction_6	47.0986806002643	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCAATTAGCAATTTACT	NA	False	NA	-5	True	AATAAA	-22	NA	80551038	80541006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550202_80550391_80550460_80550932
transcript_51855.nic	chr7	-	1454	7	NIC	ENSMUSG00000025722.17	novel	2114	8	NA	NA	0	2	combination_of_known_junctions	FALSE	canonical	3	13	junction_4	46.1173021278951	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCAATTAGCAATTTACT	NA	False	NA	-5	True	AATAAA	-22	NA	80550982	80541006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80550095_80550185_80550391_80550460_80550932
transcript_51856.known	chr7	-	2549	7	FSM	ENSMUSG00000025722.17	ENSMUST00000139990.8	2549	7	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_4	7.94599829404014	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTATTTTGTGTGTATGAG	NA	False	NA	-4	True	AATAAA	-15	NA	80550980	80540471	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_80541658_80542723_80543090_80543396_80543562_80547670_80547736_80548250_80548340_80550095_80550185_80550391
transcript_51857.known	chr7	-	728	7	FSM	ENSMUSG00000025724.13	ENSMUST00000147881.8	728	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	452.296885045898	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACACACGTTGGCACTTC	1654	False	NA	NA	False	NA	NA	NA	80597259	80565510	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_80565653_80565922_80565981_80572094_80572133_80572848_80572969_80577484_80577635_80584774_80584885_80597149
transcript_51858.known	chr7	-	1094	7	FSM	ENSMUSG00000025724.13	ENSMUST00000117383.8	1094	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	468.865889377999	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGGACTGTCAATCACAG	1385	False	NA	-106	True	NA	NA	NA	80597528	80565408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_80565653_80565922_80565981_80572848_80572969_80575345_80575379_80577484_80577635_80584774_80584885_80597149
transcript_51860.known	chr7	-	1345	6	FSM	ENSMUSG00000025724.13	ENSMUST00000026818.12	1345	6	0	0	0	0	multi-exon	FALSE	canonical	3	936	junction_3	43.4391528462515	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCTTTCCCTGAATTCTGT	1385	False	NA	-5	True	AATAAA	-18	NA	80597528	80565124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_80565653_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
transcript_51871.known	chr7	-	678	3	FSM	ENSMUSG00000025723.13	ENSMUST00000119428.2	678	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	6	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGAATGTCTGGGCCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	80554808	80551981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_80552247_80553881_80554055_80554568
transcript_51872.known	chr7	-	875	6	FSM	ENSMUSG00000025724.13	ENSMUST00000120285.8	875	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	394.796859156706	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGCTGCAAAGGCAAGAGCT	1652	False	NA	NA	False	NA	NA	NA	80597261	80557463	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_80557789_80565922_80565981_80572848_80572969_80577484_80577635_80584774_80584885_80597149
transcript_51877.nic	chr7	+	2044	9	ISM	ENSMUSG00000025726.12	ENSMUST00000119083.2	2899	18	26945	0	26945	0	3prime_fragment	FALSE	canonical	3	108	junction_1	7.38135319572231	122	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTACAGTGTG	9954	False	NA	11	True	AATAAA	-20	NA	80791542	80820164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_80791793_80803147_80803274_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
transcript_51880.nnic	chr7	+	1855	8	NIC	ENSMUSG00000025726.12	novel	2846	18	NA	NA	27008	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_1	42.0490481340493	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTACAGTGTG	NA	False	NA	11	True	AATAAA	-20	NA	80791605	80820164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_80791793_80810712_80810844_80814018_80814188_80814273_80814472_80817713_80817796_80818711_80818811_80818914_80819027_80819287
transcript_51883.nic	chr7	+	935	5	ISM	ENSMUSG00000025726.12	ENSMUST00000119083.2	2899	18	27003	5574	27003	-5574	internal_fragment	FALSE	canonical	3	108	junction_1	5.1478150704935	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAGAATACAGAGTCATAA	NA	False	NA	NA	False	TATAAA	-13	NA	80791600	80814590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_80791793_80803147_80803274_80810712_80810844_80814018_80814188_80814273
transcript_51885.known	chr7	-	494	5	FSM	ENSMUSG00000061787.16	ENSMUST00000080813.5	494	5	0	0	0	0	multi-exon	FALSE	canonical	3	8882	junction_4	1855.19963548401	10000	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTCTGTATTGTTCTTG	NA	False	NA	-10	True	AATAAA	-12	NA	80995002	80992480	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994604_80994757_80994949
transcript_51886.known	chr7	-	383	5	FSM	ENSMUSG00000061787.16	ENSMUST00000208054.2	383	5	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_3	5279.89450652189	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTGTCTGTATTGTTCT	NA	False	NA	-12	True	AATAAA	-10	NA	80994975	80992482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_80992598_80993482_80993549_80994058_80994165_80994686_80994757_80994949
transcript_51887.known	chr7	-	405	3	FSM	ENSMUSG00000061787.16	ENSMUST00000130487.8	405	3	0	0	0	0	multi-exon	FALSE	canonical	3	12924	junction_1	227	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCTGTATTGTTCTTGC	NA	False	NA	-9	True	AATAAA	-13	NA	80994279	80992479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_80992598_80993482_80993549_80994058
transcript_51893.known	chr7	-	3806	26	FSM	ENSMUSG00000062444.16	ENSMUST00000082090.15	3806	26	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_25	15.5434873821804	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTCACCTTTCCTTC	7640	False	NA	1	True	AATAAA	-17	NA	81143673	81110146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_81110550_81110675_81110815_81112651_81112750_81112988_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887_81115006_81115404_81115514_81115918_81116038_81117182_81117370_81121569_81121747_81122747_81122858_81123134_81123268_81123604_81123668_81126027_81126100_81126488_81126544_81126693_81126978_81127063_81127247_81127335_81127403_81127653_81127815_81134173_81134270_81134583_81134659_81134781_81134858_81143255
transcript_51895.nnic	chr7	-	924	5	NNC	ENSMUSG00000062444.16	novel	3806	26	NA	NA	-19	-3555	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	25.7524270700841	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAACCAAAAAAAGCAATC	7840	False	NA	NA	False	NA	NA	NA	81143473	81132948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_81133408_81134173_81134270_81134583_81134659_81134781_81134858_81143255
transcript_51896.known	chr7	-	1459	9	FSM	ENSMUSG00000062444.16	ENSMUST00000147624.2	1459	9	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_7	12.5871958751741	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGCTCACCTTTCCTTC	NA	False	NA	1	True	AATAAA	-17	NA	81115043	81110146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_81110550_81110675_81110815_81112651_81112750_81112988_81113074_81113431_81113661_81113838_81113946_81114189_81114251_81114378_81114560_81114887
transcript_51897.known	chr7	-	567	5	FSM	ENSMUSG00000061877.14	ENSMUST00000207871.2	567	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	2.6809513236909	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAAAGAGGTTTCAGAAGG	3294	False	NA	NA	False	NA	NA	NA	81148019	81144067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_81144127_81144873_81145122_81145326_81145529_81146597_81146616_81147979
transcript_51898.nic	chr7	+	863	5	NIC	ENSMUSG00000097277.8	novel	720	4	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_3	35.5457451743524	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTTTGGGTATTATG	NA	False	NA	8	True	AATAAA	-13	NA	81173286	81181246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_81173425_81178534_81178689_81178904_81179007_81179094_81179276_81180958
transcript_51900.known	chr7	+	725	4	FSM	ENSMUSG00000097277.8	ENSMUST00000180879.8	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	29.9777695412228	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCAAAATTTTTTGGGTAT	NA	False	NA	4	True	AATAAA	-9	NA	81173318	81181242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_81173425_81178534_81178689_81179094_81179276_81180958
transcript_51902.nic	chr7	+	800	4	NIC	ENSMUSG00000097277.8	novel	725	4	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	11	junction_1	41.2148840428633	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTTTTTGGGTATTATG	NA	False	NA	8	True	AATAAA	-13	NA	81173294	81181246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_81173472_81178534_81178689_81179094_81179276_81180958
transcript_51904.known	chr7	+	1452	3	FSM	ENSMUSG00000038646.14	ENSMUST00000042166.11	1452	3	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_1	195	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTAGTTTTGACAGCCC	NA	False	NA	NA	False	AATAAA	-30	NA	81412672	81419239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_81412805_81417274_81417472_81418116
transcript_51911.known	chr7	+	1391	3	FSM	ENSMUSG00000038646.14	ENSMUST00000118190.2	1391	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	414	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCAACTTTACCTTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	81413030	81419228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_81413113_81417274_81417472_81418116
transcript_51914.known	chr7	-	3001	8	FSM	ENSMUSG00000025103.9	ENSMUST00000026093.9	3001	8	0	0	0	0	multi-exon	FALSE	canonical	3	689	junction_4	90.4076933695809	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTATTTGTCACCTCTCTTT	NA	False	NA	-4	True	AATAAA	-18	NA	81479179	81441821	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_81443475_81443905_81444053_81446743_81446832_81450705_81450899_81455489_81455688_81465662_81465769_81467942_81468100_81478720
transcript_51919.nnic	chr7	-	1260	5	NNC	ENSMUSG00000025102.15	novel	405	4	NA	NA	-35	2349	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_4	126.089254102005	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACCAGGCGTGGTGGCGCA	NA	False	NA	NA	False	ATTAAA	-16	NA	81439261	81429580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81439102
transcript_5192.known	chr10	+	5388	9	FSM	ENSMUSG00000001786.15	ENSMUST00000130320.8	5388	9	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_3	24.7878498462452	180	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTACAATGGCCCTACCCTG	NA	False	NA	3	True	AATAAA	-20	NA	85857835	85887737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_85858009_85860279_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
transcript_51922.nnic	chr7	-	885	5	NNC	ENSMUSG00000025102.15	novel	504	4	NA	NA	-7	1899	at_least_one_novel_splicesite	FALSE	canonical	3	98	junction_4	96.0325465662553	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAGCCTACAACAAAATG	NA	False	NA	NA	False	NA	NA	NA	81439233	81430030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81438999
transcript_51924.nnic	chr7	-	810	5	NNC	ENSMUSG00000025102.15	novel	405	4	NA	NA	-35	1899	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_4	126.089254102005	41	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTAAGCCTACAACAAAATG	NA	False	NA	NA	False	NA	NA	NA	81439261	81430030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_81430319_81432778_81432887_81435824_81435953_81438197_81438325_81439102
transcript_51926.nic	chr7	-	997	5	NIC	ENSMUSG00000025102.15	novel	887	5	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	98	junction_4	83.5852857864349	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTAGCAGTTTCGAGTGC	NA	False	NA	NA	False	AATAAA	-17	NA	81439233	81431929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81438999
transcript_51927.known	chr7	-	887	5	FSM	ENSMUSG00000025102.15	ENSMUST00000026092.9	887	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	120.296508677517	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTAGCAGTTTCGAGTGC	NA	False	NA	NA	False	AATAAA	-17	NA	81439226	81431929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439102
transcript_51931.nic	chr7	-	895	5	NIC	ENSMUSG00000025102.15	novel	887	5	NA	NA	-7	-102	combination_of_known_junctions	FALSE	canonical	3	98	junction_4	83.5852857864349	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTAATGTCAGTTATTT	NA	False	NA	-1	True	AGTAAA	-17	NA	81439233	81432031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81438999
transcript_51932.nnic	chr7	-	830	5	NNC	ENSMUSG00000025102.15	novel	887	5	NA	NA	-15	-102	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_4	112.09008653757	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTAATGTCAGTTATTT	NA	False	NA	-1	True	AGTAAA	-17	NA	81439241	81432031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_81432330_81432778_81432887_81435824_81435953_81438197_81438325_81439072
transcript_51936.known	chr7	+	2226	10	FSM	ENSMUSG00000038623.10	ENSMUST00000041890.8	2226	10	0	0	0	0	multi-exon	TRUE	canonical	3	11	junction_7	3.33703498170693	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACTTTATTAATTTTGAAG	NA	False	NA	NA	False	AATAAA	-25	NA	81508748	81533819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_81509289_81512897_81513002_81514994_81515093_81518388_81518493_81520444_81520528_81521116_81521239_81523479_81523585_81525471_81525565_81525722_81525843_81532962
transcript_5194.nic	chr10	+	1827	9	NIC	ENSMUSG00000001786.15	novel	5388	9	NA	NA	-141	0	combination_of_known_junctions	TRUE	canonical	3	23	junction_1	77.6434156899347	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGACTTGACTTTTTT	NA	False	NA	10	True	AGTAAA	-13	NA	85857694	85884187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_85858009_85860431_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
transcript_51940.nnic	chr7	-	1271	2	Intergenic	novelGene_11	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	29	junction_1	0	14	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGTATCTGCATTAATCATA	NA	False	NA	NA	False	AATAAA	-27	NA	81814548	81761686	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Intergenic_chr7_-_81762785_81814375
transcript_51941.nnic	chr7	-	416	2	Intergenic	novelGene_12	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	29	junction_1	0	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCTGAAGGAGAGACAAAGCC	NA	False	NA	NA	False	NA	NA	NA	81814548	81762541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Intergenic_chr7_-_81762785_81814375
transcript_51942.known	chr7	+	1647	9	FSM	ENSMUSG00000030638.14	ENSMUST00000032874.14	1647	9	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_3	40.04040927613	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	NA	False	NA	17	True	AATAAA	-24	NA	81824543	81956627	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_81824768_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_51943.known	chr7	+	1486	9	FSM	ENSMUSG00000030638.14	ENSMUST00000177895.8	1486	9	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_3	89.2394951801051	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	NA	False	NA	17	True	AATAAA	-24	NA	81824697	81956627	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_81824768_81909339_81909409_81917487_81917561_81919987_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_51944.nnic	chr7	+	1768	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	37443	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	107.755437797821	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	3004	False	NA	17	True	AATAAA	-24	NA	81862424	81956627	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_81862770_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_51945.nnic	chr7	+	1761	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	37443	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_1	128.793196637089	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	3004	False	NA	17	True	AATAAA	-24	NA	81862424	81956627	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_81862770_81909339_81909409_81917487_81917561_81919987_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_51947.nnic	chr7	+	1638	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	37523	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	130.9646302442	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	3084	False	NA	17	True	AATAAA	-24	NA	81862504	81956627	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_81862727_81909339_81909409_81917487_81917561_81919987_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_51949.nnic	chr7	+	1670	9	NNC	ENSMUSG00000030638.14	novel	763	4	NA	NA	-30902	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_1	100.011249367259	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGTTATTTTCAATGTC	NA	False	NA	17	True	AATAAA	-24	NA	81889191	81956627	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_81889439_81909339_81909409_81917487_81917561_81919980_81920125_81923068_81923203_81925334_81925494_81933262_81933367_81934228_81934339_81955997
transcript_5195.known	chr10	+	1655	9	FSM	ENSMUSG00000001786.15	ENSMUST00000120344.8	1655	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	78.2747564672034	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGACTTGACTTTTTT	NA	False	NA	10	True	AGTAAA	-13	NA	85858052	85884187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_85858195_85860431_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
transcript_51954.known	chr7	-	430	2	FSM	ENSMUSG00000038570.16	ENSMUST00000126478.2	430	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCCTTTTGTACCTATCC	NA	False	NA	0	True	AATAAA	-27	NA	82297736	82295375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_82295669_82297599
transcript_51955.known	chr7	-	2026	3	FSM	ENSMUSG00000038570.16	ENSMUST00000151632.8	2026	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAACAGCCTCAATTGTA	NA	False	NA	NA	False	AATACA	-40	NA	82297736	82291348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_82293058_82294857_82295038_82297599
transcript_51956.known	chr7	+	3610	20	FSM	ENSMUSG00000038563.15	ENSMUST00000039881.4	3610	20	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	22.1664566531058	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCGTTTGTTTAATTAAT	NA	False	NA	38	True	AATAAA	-43	NA	82297848	82427060	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_82297887_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086_82347226_82399999_82400132_82402781_82402930_82411642_82412623_82421664_82421850_82426698
transcript_51957.known	chr7	+	3608	20	FSM	ENSMUSG00000038563.15	ENSMUST00000179489.8	3608	20	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	25.8006420500325	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCGTTTGTTTAATTAAT	NA	False	NA	38	True	AATAAA	-43	NA	82297821	82427060	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_82297858_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086_82347226_82399999_82400132_82402781_82402930_82411642_82412623_82421664_82421850_82426698
transcript_51958.nic	chr7	+	2109	15	ISM	ENSMUSG00000038563.15	ENSMUST00000039881.4	3610	20	-36	79565	-9	-397	5prime_fragment	FALSE	canonical	3	73	junction_1	23.371555186524	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCTTACTCATATAAAGT	NA	False	NA	NA	False	NA	NA	NA	82297812	82347495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_82297887_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086
transcript_5196.known	chr10	+	1799	9	FSM	ENSMUSG00000001786.15	ENSMUST00000117597.2	1799	9	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	75.1232320923428	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGCAGACTTGACTTTTTT	NA	False	NA	10	True	AGTAAA	-13	NA	85858060	85884187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_85858195_85860279_85860575_85864872_85865101_85866791_85866934_85869097_85869185_85878785_85878882_85880286_85880464_85882636_85882675_85883585
transcript_51961.nnic	chr7	+	1093	5	NNC	ENSMUSG00000038563.15	novel	3610	20	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	60.1139542868376	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTGGCCTGTGGCTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	82297812	82308234	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_82297887_82298733_82298840_82301088_82301157_82307264_82307350_82307474
transcript_51962.nnic	chr7	+	1062	5	NNC	ENSMUSG00000038563.15	novel	755	7	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_4	64.6935081750866	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGAGTGGCCTGTGGCTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	82297814	82308234	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_82297858_82298733_82298840_82301088_82301157_82307264_82307350_82307474
transcript_51963.known	chr7	+	2453	15	FSM	ENSMUSG00000038563.15	ENSMUST00000125245.8	2453	15	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	27.9482028190781	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGCTACTGGTTTGCCTG	NA	False	NA	NA	False	AATAAA	-15	NA	82297836	82347892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_82297858_82298733_82298840_82301088_82301157_82307264_82307350_82320812_82320947_82322017_82322156_82323575_82323791_82330559_82330684_82332212_82332290_82332911_82333049_82333526_82333650_82335872_82335973_82341670_82341823_82342037_82342205_82347086
transcript_51964.known	chr7	+	2483	6	FSM	ENSMUSG00000046027.18	ENSMUST00000075418.15	2483	6	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_5	19.4566184112245	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTGAGTTCCTCATTTA	NA	False	NA	NA	False	ATTAAA	-23	NA	83281166	83291536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_83281348_83281943_83281994_83282337_83282471_83285958_83286077_83286811_83286906_83289629
transcript_51968.nnic	chr7	+	1213	6	NNC	ENSMUSG00000046027.18	novel	2483	6	NA	NA	8	-1211	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	68.860438569617	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTGTGATCTCTTCCATC	NA	False	NA	38	True	TTTAAA	-40	NA	83281174	83290325	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_83281297_83281943_83281994_83282337_83282471_83285958_83286077_83286811_83286906_83289629
transcript_51973.known	chr7	+	489	4	FSM	ENSMUSG00000038503.16	ENSMUST00000130103.2	489	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	621.098131448557	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCGCCATCTTCATGCTCC	NA	False	NA	NA	False	NA	NA	NA	83541209	83546975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_83541276_83541511_83541684_83544737_83544971_83546957
transcript_51974.known	chr7	+	4492	3	FSM	ENSMUSG00000038503.16	ENSMUST00000094215.10	4492	3	0	0	0	0	multi-exon	FALSE	canonical	3	1312	junction_2	6.5	1623	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCTTTATTCTGTGCGTGT	NA	False	NA	NA	False	TTTAAA	-41	NA	83541207	83550740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_83541684_83544737_83544971_83546957
transcript_51977.known	chr7	+	1109	3	FSM	ENSMUSG00000038503.16	ENSMUST00000153377.2	1109	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	654.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGCATAGCAGATGACATT	NA	False	NA	NA	False	NA	NA	NA	83541537	83547288	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_83542083_83544737_83544971_83546957
transcript_51980.known	chr7	-	2238	3	FSM	ENSMUSG00000038459.11	ENSMUST00000117085.2	2238	3	0	0	0	0	multi-exon	FALSE	canonical	3	1379	junction_1	80.5	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCGTGGGCTTATGTGCTCC	NA	False	NA	-7	True	AATAAA	-18	NA	83801101	83758563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_83760010_83763458_83763639_83800489
transcript_51982.known	chr7	-	6151	19	FSM	ENSMUSG00000015709.10	ENSMUST00000085077.5	6151	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	2.23123173644702	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGAGTGCCTTGGACTGGCT	NA	False	NA	2	True	AATAAA	-20	NA	84059327	83895485	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_83899363_83900573_83900711_83911600_83911752_83912386_83912526_83914782_83914883_83917112_83917237_83918046_83918120_83924542_83924695_83931304_83931380_83933200_83933336_83934981_83935059_83954004_83954091_83954401_83954468_83960080_83960184_83992949_83993164_83996549_83996764_84003727_84003776_84010761_84010877_84059062
transcript_51984.known	chr7	-	1585	14	FSM	ENSMUSG00000030630.17	ENSMUST00000032865.17	1585	14	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_9	7.3524942432914	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGTTCTTGGTTTTAGC	NA	False	NA	-4	True	AATAAA	-32	NA	84255150	84234366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_84234553_84238038_84238157_84238781_84238884_84241589_84241637_84242393_84242470_84243920_84244052_84244665_84244766_84246241_84246295_84246385_84246484_84248261_84248353_84249984_84250035_84250240_84250363_84251288_84251400_84254850
transcript_51992.known	chr7	-	1658	8	FSM	ENSMUSG00000030629.16	ENSMUST00000069537.3	1658	8	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_7	283.434475744953	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCTACGTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	84328559	84264261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84302089_84302251_84328517
transcript_51993.known	chr7	-	967	8	FSM	ENSMUSG00000030629.16	ENSMUST00000209165.2	967	8	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_6	270.713795702534	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGATCCAGAAGATTTG	NA	False	NA	NA	False	AAGAAA	-18	NA	84339091	84265048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84302089_84302251_84338953
transcript_51994.known	chr7	-	1538	7	FSM	ENSMUSG00000030629.16	ENSMUST00000178385.9	1538	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	230.002475832085	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCTACGTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	84328600	84264261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84328517
transcript_51995.known	chr7	-	2955	7	FSM	ENSMUSG00000030629.16	ENSMUST00000209117.2	2955	7	0	0	0	0	multi-exon	FALSE	canonical	3	577	junction_5	69.5045961709648	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAACAAAACAAAA	NA	False	NA	NA	False	AAGAAA	-41	NA	84339165	84262973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_84265177_84267057_84267172_84270075_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84338953
transcript_51998.nic	chr7	-	4468	6	NIC	ENSMUSG00000030629.16	novel	2955	7	NA	NA	29	0	intron_retention	FALSE	canonical	3	577	junction_4	72.676268478782	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAAAAGCTACGTTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	84339062	84264261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_84265177_84267057_84270121_84281863_84281965_84283092_84283202_84283446_84283618_84338953
transcript_52.known	ERCC-00154	+	521	1	FSM	ERCC-00154A	DQ854997	521	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00154_+_0_500
transcript_520.nnic	chr1	+	1517	10	NNC	ENSMUSG00000026127.14	novel	5836	9	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	221.497930765354	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCTGAGGTTGGGTTAA	5581	False	NA	52	True	AATAAA	-15	NA	34478899	34488437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34487706_34487947_34488029
transcript_52002.known	chr7	+	3753	18	FSM	ENSMUSG00000030562.18	ENSMUST00000032781.14	3753	18	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	3.12706679058871	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTGTGGAATTTCTA	NA	False	NA	NA	False	AATAAA	-15	NA	86895856	87047918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_86896111_86896695_86896792_86944991_86945103_86946662_86946748_86954045_86954144_86955936_86955965_86963271_86963345_86966438_86966520_86970753_86970971_86972840_86973006_86973140_86973204_86988164_86988226_87009935_87010018_87019225_87019346_87021126_87021236_87023561_87023631_87025389_87025491_87045978
transcript_52003.known	chr7	+	3749	18	FSM	ENSMUSG00000030562.18	ENSMUST00000126887.8	3749	18	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_2	3.42896273924463	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGTCTGTGGAATTTCTA	NA	False	NA	NA	False	AATAAA	-15	NA	86895856	87047918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_86896111_86896695_86896792_86944995_86945103_86946662_86946748_86954045_86954144_86955936_86955965_86963271_86963345_86966438_86966520_86970753_86970971_86972840_86973006_86973140_86973204_86988164_86988226_87009935_87010018_87019225_87019346_87021126_87021236_87023561_87023631_87025389_87025491_87045978
transcript_52005.known	chr7	+	2493	7	FSM	ENSMUSG00000030560.18	ENSMUST00000032779.12	2493	7	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_5	18.6100331362771	98	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTCTTGTTGTGTGTCTTT	NA	False	NA	NA	False	AATAAA	-34	NA	87927292	87960096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_87927583_87930594_87930741_87946290_87946458_87948652_87948806_87951392_87951509_87957220_87957353_87958607
transcript_52006.known	chr7	+	1577	3	FSM	ENSMUSG00000030559.9	ENSMUST00000107256.4	1577	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	4.5	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTAAGGTATTGGGATGT	NA	False	NA	NA	False	NA	NA	NA	88079480	88140780	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_88079812_88099688_88099970_88139815
transcript_52007.known	chr7	-	453	1	FSM	ENSMUSG00000069972.7	ENSMUST00000182017.2	453	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	184	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAATGCTGTTGTGTGCACA	NA	False	NA	NA	False	NA	NA	NA	88180106	88179653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_88179700_88180100
transcript_52009.known	chr7	-	3700	15	FSM	ENSMUSG00000039428.12	ENSMUST00000041968.11	3700	15	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	15.7941154115276	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGGGTTTTATTTCCAT	NA	False	NA	NA	False	AATAAA	-24	NA	88987995	88788921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_88791179_88792988_88793057_88793864_88793964_88797177_88797255_88800620_88800685_88803235_88803404_88805634_88805705_88808076_88808224_88814332_88814375_88845320_88845368_88893128_88893195_88929174_88929209_88953888_88953982_88956344_88956473_88987655
transcript_52014.known	chr7	+	6720	2	FSM	ENSMUSG00000049791.5	ENSMUST00000058755.5	6720	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGTGTGCATTGGTGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	89053562	89062342	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_89054180_89056239
transcript_52015.known	chr7	-	1053	6	FSM	ENSMUSG00000062797.15	ENSMUST00000078918.10	1053	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_4	509.123403508422	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATTTGAAATACCATTACA	NA	False	NA	-1	True	AATAAA	-18	NA	89590274	89567910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89579527_89579669_89584934_89585173_89590176
transcript_52021.known	chr7	-	2224	5	FSM	ENSMUSG00000062797.15	ENSMUST00000153470.9	2224	5	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_3	227.142026054185	581	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATGTACCTTGACAGTGG	NA	False	NA	-14	True	AATAAA	-17	NA	89590412	89566736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89584934_89585173_89590176
transcript_52032.known	chr7	-	806	4	FSM	ENSMUSG00000062797.15	ENSMUST00000208357.2	806	4	0	0	0	0	multi-exon	FALSE	canonical	3	430	junction_3	356.664485974642	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTATTTGAAATACCATTAC	NA	False	NA	-2	True	AATAAA	-17	NA	89590407	89567911	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_89568216_89569280_89569400_89572771_89572924_89590176
transcript_52035.known	chr7	-	835	4	FSM	ENSMUSG00000062797.15	ENSMUST00000207309.2	835	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	457.818741425032	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACATGTGTAACCTTTTCG	NA	False	NA	14	True	AATAAA	-33	NA	89590334	89567895	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_89568216_89569280_89569400_89584934_89585173_89590176
transcript_52048.known	chr7	-	271	2	FSM	ENSMUSG00000097162.3	ENSMUST00000209166.2	271	2	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTCAAACCGCTATCTAA	NA	False	NA	-13	True	AATAAA	-17	NA	89779148	89774038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_89774241_89779079
transcript_52049.known	chr7	-	432	3	FSM	ENSMUSG00000097162.3	ENSMUST00000209164.2	432	3	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	1.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTTCAAACCGCTATCTAA	NA	False	NA	-13	True	AATAAA	-17	NA	89779192	89774038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_89774241_89776135_89776253_89779079
transcript_52050.known	chr7	+	3427	20	FSM	ENSMUSG00000039361.12	ENSMUST00000208730.2	3427	20	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_16	49.8793002992018	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACATGTTACGGTGTTCT	NA	False	NA	13	True	AATAAA	-14	NA	89779500	89858134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_89779911_89809655_89809799_89810467_89810544_89814721_89814825_89818389_89818484_89819786_89819899_89821441_89821549_89822241_89822284_89823655_89823742_89825486_89825611_89825866_89826004_89826707_89826812_89838357_89838466_89840363_89840481_89840566_89840598_89840861_89840962_89843480_89843505_89844862_89844923_89846123_89846229_89856790
transcript_52051.known	chr7	+	3489	19	FSM	ENSMUSG00000039361.12	ENSMUST00000207225.2	3489	19	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_13	27.4656350938971	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTACGGTGTTCTGGTTTG	NA	False	NA	19	True	AATAAA	-20	NA	89779420	89858140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_89779911_89809655_89809799_89810467_89810544_89814721_89814825_89818389_89818484_89819786_89819899_89821441_89821549_89822241_89822284_89823655_89823742_89825486_89825611_89825866_89826004_89826707_89826812_89838357_89838466_89840363_89840481_89840566_89840598_89840861_89840962_89844862_89844923_89846123_89846229_89856790
transcript_52054.known	chr7	-	799	5	FSM	ENSMUSG00000030615.13	ENSMUST00000032844.7	799	5	0	0	0	0	multi-exon	FALSE	canonical	3	739	junction_4	32.5297940356222	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGCAACATTAAAATACTT	1645	False	NA	NA	False	AATAAA	-19	NA	90106437	90099907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_90100144_90100750_90100866_90101914_90102109_90104631_90104728_90106279
transcript_52056.known	chr7	-	756	5	FSM	ENSMUSG00000030615.13	ENSMUST00000136652.8	756	5	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_2	308.308591349641	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGCAACATTAAAATACTT	1666	False	NA	NA	False	AATAAA	-19	NA	90106416	90099907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_90100144_90100750_90100866_90101936_90102109_90104631_90104728_90106279
transcript_52057.known	chr7	-	466	4	FSM	ENSMUSG00000030615.13	ENSMUST00000207159.2	466	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	346.691345275432	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATCTTGTCTGCAAC	1772	False	NA	NA	False	AATAAA	-7	NA	90106310	90099919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_90100144_90100750_90100866_90104631_90104728_90106279
transcript_52059.known	chr7	-	397	2	FSM	ENSMUSG00000030615.13	ENSMUST00000153393.3	397	2	0	0	0	0	multi-exon	FALSE	canonical	3	739	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCACCTTTCCATTCAGCTT	1721	False	NA	NA	False	NA	NA	NA	90106361	90104412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_90104728_90106279
transcript_52060.known	chr7	-	2259	5	FSM	ENSMUSG00000030614.9	ENSMUST00000032843.9	2259	5	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_1	24.1389208540896	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAATGCATGGAGGTCCCTG	6020	False	NA	NA	False	NA	NA	NA	90125209	90116645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_90118370_90118777_90118890_90119972_90120167_90121805_90121928_90125102
transcript_52063.known	chr7	-	2782	12	FSM	ENSMUSG00000041343.20	ENSMUST00000118157.8	2782	12	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	4.22702834093188	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAGATGTACTACTACTAATA	NA	False	NA	NA	False	AATAAA	-17	NA	92286350	92233390	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_92233754_92239322_92239468_92241038_92241166_92254415_92254589_92259752_92259859_92261950_92262077_92263559_92263761_92268755_92268892_92273175_92273296_92274978_92275087_92280706_92280871_92285337
transcript_52064.known	chr7	+	1596	9	FSM	ENSMUSG00000030613.14	ENSMUST00000032842.13	1596	9	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_4	17.8658193207029	192	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTGTAAATGTGTTAT	NA	False	NA	10	True	AATAAA	-18	NA	92210356	92231502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_92210844_92216829_92216950_92217679_92217784_92221746_92221849_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231002
transcript_52068.known	chr7	+	1494	8	FSM	ENSMUSG00000030613.14	ENSMUST00000085017.5	1494	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	63.9607660354122	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCATTGTAAATGTGTTAT	NA	False	NA	10	True	AATAAA	-18	NA	92210356	92231502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_92210844_92216829_92216950_92217679_92217784_92223829_92223872_92223951_92224024_92224536_92224591_92227631_92227747_92231002
transcript_52073.known	chr7	-	5995	16	FSM	ENSMUSG00000041328.17	ENSMUST00000119954.9	5995	16	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_15	55.0229850961295	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGAAGGCTTTTTTCATG	NA	False	NA	NA	False	ATTAAA	-25	NA	92319142	92292750	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_92293986_92295197_92295234_92295637_92295731_92296135_92296292_92297149_92297334_92298133_92298240_92298663_92298784_92302357_92302458_92306515_92308075_92309005_92309097_92309207_92309389_92310166_92311285_92312669_92312865_92313174_92313364_92314947_92315074_92318636
transcript_52074.nic	chr7	-	2158	9	ISM	ENSMUSG00000041328.17	ENSMUST00000151177.2	4731	13	5385	0	5385	0	3prime_fragment	FALSE	canonical	3	164	junction_7	31.850971335267	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTATCCATGGAGTGTAATAT	NA	False	NA	-6	True	NA	NA	NA	92307360	92293467	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_92293986_92295197_92295234_92295637_92295731_92296135_92296292_92297149_92297334_92298133_92298240_92298663_92298784_92302357_92302458_92306515
transcript_52075.known	chr7	-	3832	1	FSM	ENSMUSG00000074024.6	ENSMUST00000182578.2	3832	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGACATAAGCAGGGTATTTA	NA	False	NA	NA	False	AAAAAG	-15	NA	92390676	92386844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_92386800_92390700
transcript_52076.known	chr7	+	9456	5	FSM	ENSMUSG00000030643.15	ENSMUST00000032879.15	9456	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	4.32290411644765	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGGAGGATTATATACCAT	NA	False	NA	NA	False	AATAAA	-19	NA	92390810	92493743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_92391051_92469190_92469292_92473005_92473090_92478733_92478918_92484896
transcript_52080.known	chr7	-	840	7	FSM	ENSMUSG00000030641.11	ENSMUST00000208356.2	840	7	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_4	58.4648517392193	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGAAACCTCACTGTGGCT	NA	False	NA	NA	False	NA	NA	NA	92523445	92509356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_92509521_92510607_92510726_92511532_92511695_92515778_92515908_92517319_92517407_92521969_92522053_92523348
transcript_52081.known	chr7	-	3387	6	FSM	ENSMUSG00000030641.11	ENSMUST00000032877.11	3387	6	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_4	35.6168499449348	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTTTTTTGTTATAATTT	NA	False	NA	-1	True	AGTAAA	-18	NA	92523455	92506732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_92509521_92510607_92510726_92511532_92511695_92515778_92515908_92521969_92522053_92523348
transcript_52083.nnic	chr7	+	2354	10	NNC	ENSMUSG00000061119.8	novel	2967	9	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_8	43.4710063727737	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATTGAAAAAGTAGAATG	NA	False	NA	102	True	AATAAA	-24	NA	92524504	92583222	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_92524709_92550366_92550508_92554318_92554421_92559342_92559525_92566876_92567035_92568209_92568380_92576887_92577053_92577812_92577987_92578332_92578348_92582179
transcript_52086.known	chr7	+	2967	9	FSM	ENSMUSG00000061119.8	ENSMUST00000076052.8	2967	9	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	10.1665812837945	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGCATTTATATTAATTTATA	NA	False	NA	NA	False	NA	NA	NA	92524459	92583791	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_92524709_92550366_92550508_92554318_92554421_92559342_92559525_92566876_92567035_92568209_92568380_92576887_92577053_92577812_92578001_92582179
transcript_52088.known	chr7	+	687	4	FSM	ENSMUSG00000061119.8	ENSMUST00000207992.2	687	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	46.0506967012082	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATACCTAATGTCTTCTATCT	NA	False	NA	NA	False	AATAAA	-24	NA	92524502	92555794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_92524709_92550366_92550508_92554318_92554421_92555556
transcript_52089.nnic	chr7	-	643	2	NNC	ENSMUSG00000087412.5	novel	849	2	NA	NA	-24	21	at_least_one_novel_splicesite	FALSE	canonical	3	464	junction_1	0	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGTTTACTGGCCTTTTAA	NA	False	NA	-1	True	AATAAA	-36	NA	92828876	92828168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_92828742_92828806
transcript_52090.known	chr7	-	625	1	FSM	ENSMUSG00000087412.5	ENSMUST00000140687.2	625	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCCTCATGTGTAGTGTAA	NA	False	NA	-60	True	NA	NA	NA	92828852	92828227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_92828200_92828900
transcript_52091.known	chr7	+	2527	3	FSM	ENSMUSG00000048078.17	ENSMUST00000129445.8	2527	3	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TCAAAAAGAAAAGAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95859352	96088173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_95859617_96004562_96004619_96085966
transcript_52094.known	chr7	+	3778	14	FSM	ENSMUSG00000018995.13	ENSMUST00000044466.12	3778	14	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_6	11.3976017408833	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATACTGTTTGCGCTTCTT	7342	False	NA	NA	False	ATTAAA	-23	NA	96600711	96713965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_96601152_96605150_96605261_96607281_96607403_96608877_96609019_96622688_96622770_96652004_96652100_96672824_96672958_96680544_96680644_96680752_96680791_96684437_96684505_96689105_96689244_96706654_96706753_96708992_96709020_96711775
transcript_521.known	chr1	+	5836	9	FSM	ENSMUSG00000026127.14	ENSMUST00000027303.14	5836	9	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_1	56.5552826887109	298	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCTGAGGTTGGGTTAA	5613	False	NA	52	True	AATAAA	-15	NA	34478931	34488437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_34479009_34479121_34479231_34481990_34482075_34482458_34482569_34482643_34482777_34482849_34483005_34483077_34483173_34483276_34483351_34483438
transcript_5210.known	chr10	-	2825	18	FSM	ENSMUSG00000020048.14	ENSMUST00000020238.14	2825	18	0	0	0	0	multi-exon	FALSE	canonical	3	2860	junction_11	342.987041630793	1510	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCAGTGCTTATTTTCATAA	NA	False	NA	-40	True	AATAAA	-16	NA	86541373	86526703	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_86526993_86527492_86527613_86528003_86528160_86528249_86528329_86529240_86529378_86529777_86530024_86530213_86530484_86531340_86531407_86531523_86531602_86531689_86531828_86532582_86532700_86534182_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
transcript_52101.known	chr7	+	2966	2	FSM	ENSMUSG00000044952.6	ENSMUST00000054107.6	2966	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTACTTTGTGTCTGCTTCCA	NA	False	NA	NA	False	GATAAA	-7	NA	96981533	96999420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_96981579_96996499
transcript_52105.nnic	chr7	+	1907	13	NNC	ENSMUSG00000035704.18	novel	2039	13	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	38.2324760147995	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCACATTCACTTTCCT	NA	False	NA	63	True	NA	NA	NA	97020800	97041392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_97020940_97022875_97022955_97027307_97027358_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892_97033014_97036008_97036149_97037655_97037796_97039448_97039547_97040095_97040169_97040734
transcript_52107.known	chr7	+	2039	13	FSM	ENSMUSG00000035704.18	ENSMUST00000098300.6	2039	13	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_8	19.8289560996034	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCACATTCACTTTCCT	NA	False	NA	63	True	NA	NA	NA	97020812	97041392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892_97033014_97036008_97036149_97037655_97037796_97039448_97039547_97040095_97040169_97040734
transcript_52110.nic	chr7	+	2017	13	NIC	ENSMUSG00000035704.18	novel	2039	13	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_9	36.0380778560061	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCACATTCACTTTCCT	NA	False	NA	63	True	NA	NA	NA	97020800	97041392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892_97033014_97036008_97036149_97037689_97037796_97039448_97039547_97040095_97040169_97040734
transcript_52112.nic	chr7	+	984	8	ISM	ENSMUSG00000035704.18	ENSMUST00000098300.6	2039	13	-12	8337	-12	-7801	5prime_fragment	TRUE	canonical	3	115	junction_7	14.6175739911846	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACTAGTCCCACCAGGAAG	NA	False	NA	NA	False	NA	NA	NA	97020800	97033055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_97020940_97022875_97022955_97027307_97027502_97029014_97029125_97029447_97029516_97031780_97031908_97032125_97032230_97032892
transcript_52113.known	chr7	+	683	3	FSM	ENSMUSG00000030647.9	ENSMUST00000032882.9	683	3	0	0	0	0	multi-exon	FALSE	canonical	3	2164	junction_2	233	1576	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTCCTTTCCTGGTTCTGC	NA	False	NA	21	True	ATTAAA	-20	NA	97049209	97057009	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_97049565_97056072_97056217_97056825
transcript_52114.known	chr7	+	470	2	FSM	ENSMUSG00000030647.9	ENSMUST00000149122.2	470	2	0	0	0	0	multi-exon	FALSE	canonical	3	2630	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTACTGGCTGCTTGCGTGGC	NA	False	NA	NA	False	NA	NA	NA	97049309	97056287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_97049565_97056072
transcript_52116.known	chr7	-	1277	2	FSM	ENSMUSG00000035686.9	ENSMUST00000043077.8	1277	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGGCATGTTGGTCTTTTA	NA	False	NA	-6	True	ATTAAA	-15	NA	97066937	97062144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_97062723_97066238
transcript_52117.nnic	chr7	+	3169	23	NNC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	3	23	junction_5	100.677539412467	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTGTTCTAGTTTCTGG	978	False	NA	26	True	AATAAA	-14	NA	97130207	97190602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145023_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
transcript_52118.known	chr7	+	3240	23	FSM	ENSMUSG00000025133.10	ENSMUST00000026126.10	3240	23	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_9	43.027187253819	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGCTGTTCTAGTTTCTG	933	False	NA	25	True	AATAAA	-13	NA	97130162	97190601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97184347_97184492_97187106_97187228_97190218
transcript_52119.nnic	chr7	+	3051	22	NIC	ENSMUSG00000025133.10	novel	3240	23	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_20	102.131723224906	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTAGCTGTTCTAGTTTCTGG	979	False	NA	26	True	AATAAA	-14	NA	97130208	97190602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733_97162877_97165432_97165549_97166828_97166963_97168254_97168413_97175835_97175930_97178420_97178502_97179506_97179638_97179958_97180019_97183577_97183738_97187106_97187228_97190218
transcript_52123.known	chr7	+	885	5	FSM	ENSMUSG00000025133.10	ENSMUST00000205481.2	885	5	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_4	26.0708170182678	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAACTCAGTATTGACATTT	990	False	NA	NA	False	NA	NA	NA	97130219	97145190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863
transcript_52124.known	chr7	+	2179	12	FSM	ENSMUSG00000025133.10	ENSMUST00000206644.2	2179	12	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_9	35.9850749594149	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAACTTTTTGGGTTTTTTG	980	False	NA	NA	False	AGTAAA	-10	NA	97130209	97163444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_97130358_97134123_97134319_97136558_97136677_97140137_97140245_97144863_97145050_97148755_97148807_97150176_97150266_97150934_97151056_97155270_97155343_97156922_97157098_97158797_97159004_97162733
transcript_52125.known	chr7	-	709	6	FSM	ENSMUSG00000035642.17	ENSMUST00000154779.8	709	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	45.2566017283667	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTCCACATCAGCCTCCAC	NA	False	NA	-7	True	AATAAA	-31	NA	97228649	97199754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97218893_97218982_97224794_97224899_97228572
transcript_52127.known	chr7	-	883	5	FSM	ENSMUSG00000035642.17	ENSMUST00000154853.8	883	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_3	23.5902522241709	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGAAAGTTGAGAGCATTAG	NA	False	NA	NA	False	AATAAA	-22	NA	97228703	97199546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97224794_97224899_97228572
transcript_52129.known	chr7	-	776	4	FSM	ENSMUSG00000035642.17	ENSMUST00000072725.12	776	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	25.8069758011279	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAGAGCATTAGCGATCT	NA	False	NA	NA	False	AATAAA	-28	NA	97228686	97199540	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_97199949_97214357_97214508_97224794_97224899_97228572
transcript_52130.known	chr7	-	789	4	FSM	ENSMUSG00000035642.17	ENSMUST00000136757.8	789	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	30.4740326617051	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCATTAGCGATCTCAC	NA	False	NA	NA	False	AATAAA	-31	NA	97228704	97199537	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_97199949_97207337_97207434_97214357_97214508_97228572
transcript_52133.known	chr7	-	467	3	FSM	ENSMUSG00000035642.17	ENSMUST00000138060.3	467	3	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	14	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGCCTCCACTGTGTA	NA	False	NA	-1	True	AATAAA	-37	NA	97228689	97199748	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_97199949_97214357_97214508_97228572
transcript_52135.known	chr7	-	380	3	FSM	ENSMUSG00000035642.17	ENSMUST00000144858.8	380	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	34	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCAGCCTCCACTGTGTA	NA	False	NA	-1	True	AATAAA	-37	NA	97228648	97199748	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_97199949_97224794_97224899_97228572
transcript_52136.known	chr7	-	516	2	FSM	ENSMUSG00000035642.17	ENSMUST00000140805.2	516	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGCCAAAGAGAAAGTTGAGA	NA	False	NA	NA	False	AATAAA	-15	NA	97228693	97199553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_97199949_97228572
transcript_52137.known	chr7	+	11124	16	FSM	ENSMUSG00000035623.15	ENSMUST00000107153.3	11124	16	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_2	14.120749114532	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACTTAGCATTGTGTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	97229103	97341985	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_97229313_97266049_97266142_97285583_97285677_97288511_97288718_97302259_97302415_97310019_97311789_97313766_97313974_97318975_97319081_97320009_97320090_97323787_97323843_97325362_97325473_97326551_97326620_97328141_97328350_97329825_97330050_97330905_97331095_97334631
transcript_52140.known	chr7	+	1504	7	FSM	ENSMUSG00000025439.6	ENSMUST00000026506.5	1504	7	0	0	0	0	multi-exon	FALSE	canonical	3	1088	junction_4	64.1950153828161	1274	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGCTGTGATTTTGCTCT	NA	False	NA	11	True	AATAAA	-17	NA	97345840	97368086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_97346077_97354795_97354933_97360906_97361006_97361833_97361942_97363113_97363288_97365657_97365747_97367425
transcript_52146.known	chr7	-	3737	3	FSM	ENSMUSG00000042797.10	ENSMUST00000206389.2	3737	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	4.5	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTAATGTGTATATGTGAAT	NA	False	NA	NA	False	AAGAAA	-5	NA	97387496	97373212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_97375912_97378177_97378295_97386575
transcript_52147.known	chr7	+	2794	15	FSM	ENSMUSG00000030774.14	ENSMUST00000206984.2	2794	15	0	0	0	0	multi-exon	TRUE	canonical	3	118	junction_1	35.6279671159656	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATAGCATTGAGAGATT	NA	False	NA	NA	False	NA	NA	NA	97437747	97561090	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_97438182_97503642_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
transcript_52150.known	chr7	+	3065	15	FSM	ENSMUSG00000030774.14	ENSMUST00000033040.12	3065	15	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	56.3067853960129	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGGAAGTGTGTCTTTTTTC	NA	False	NA	19	True	AATAAA	-20	NA	97492141	97561588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_97492349_97503642_97503857_97514678_97514780_97515268_97515417_97520781_97520820_97532678_97532796_97535504_97535680_97538163_97538228_97543171_97543221_97547731_97547845_97549546_97549665_97552843_97552944_97553844_97554042_97557014_97557153_97560302
transcript_52153.known	chr7	-	4498	13	FSM	ENSMUSG00000035547.15	ENSMUST00000040971.14	4498	13	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_9	14.761765552339	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTCTGTTTCATTTTTCC	NA	False	NA	1	True	AATAAA	-23	NA	97827481	97770765	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_97773263_97774448_97774586_97775035_97775152_97775452_97775650_97777679_97777803_97778450_97778647_97780397_97780476_97780882_97781077_97782039_97782233_97784966_97785176_97801018_97801151_97811122_97811318_97827250
transcript_52155.known	chr7	-	2144	1	FSM	ENSMUSG00000074006.4	ENSMUST00000098281.4	2144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCTGTGGTGTGGTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	97794709	97792565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_97792600_97794700
transcript_52156.known	chr7	-	1440	12	FSM	ENSMUSG00000030760.15	ENSMUST00000151258.8	1440	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	85.8415800151892	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTACTGGCAAAATACC	NA	False	NA	-48	True	ATTAAA	-16	NA	97958735	97865649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_97866098_97867262_97867309_97873118_97873224_97875605_97875708_97879656_97879821_97893155_97893215_97901096_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
transcript_52157.known	chr7	-	11340	11	FSM	ENSMUSG00000030760.15	ENSMUST00000033020.14	11340	11	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_1	20.7511445467473	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCGGTCTGTGAAACTGT	NA	False	NA	NA	False	AATAAA	-14	NA	97958745	97855595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_97866098_97867262_97867309_97873118_97873224_97875605_97875708_97893155_97893215_97901096_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
transcript_52161.nnic	chr7	-	1248	10	NIC	ENSMUSG00000030760.15	novel	1440	12	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	1	4	junction_1	71.9891967203722	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTACTGGCAAAATACC	NA	False	NA	-48	True	ATTAAA	-16	NA	97958753	97865649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_97866098_97873118_97873224_97875605_97875708_97893155_97893215_97901096_97901133_97906902_97906985_97908611_97908665_97910793_97910847_97915343_97915455_97958554
transcript_52168.known	chr7	-	1133	4	FSM	ENSMUSG00000086477.4	ENSMUST00000148776.2	1133	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	8.17856276425687	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACACCCTCTAATTGGA	9364	False	NA	NA	False	AATAAA	-21	NA	98352135	98331542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_98332125_98342226_98342478_98342554_98342809_98352089
transcript_52169.known	chr7	+	3723	5	FSM	ENSMUSG00000030753.16	ENSMUST00000033009.16	3723	5	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_4	20.5791156272567	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCAGGTGAGGTGTTTTTG	NA	False	NA	12	True	AATAAA	-19	NA	98352309	98367269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_98352686_98356203_98356325_98359332_98359441_98362065_98362103_98364188
transcript_52170.known	chr7	-	2262	8	FSM	ENSMUSG00000030747.6	ENSMUST00000033001.6	2262	8	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	10.965623464226	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTTGTTGCTTAATGC	NA	False	NA	NA	False	AATAAA	-18	NA	98831926	98802864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_98803908_98806183_98806387_98807359_98807535_98808039_98808245_98813841_98813913_98814288_98814397_98818904_98819034_98831598
transcript_52172.known	chr7	-	1780	6	FSM	ENSMUSG00000052396.8	ENSMUST00000064231.8	1780	6	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_3	4.4	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTCTTTTCTCTCTCC	NA	False	NA	-1	True	AATAAA	-20	NA	98887826	98868290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_98869167_98871459_98871660_98872199_98872375_98872707_98872913_98881664_98881844_98887681
transcript_52174.known	chr7	+	4920	3	FSM	ENSMUSG00000055407.15	ENSMUST00000127492.2	4920	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	24	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTTCTTGATCGTATTT	NA	False	NA	6	True	AATAAA	-16	NA	98916695	98969559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_98918521_98964895_98965110_98966678
transcript_52176.known	chr7	+	2275	3	FSM	ENSMUSG00000055407.15	ENSMUST00000208605.2	2275	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	18	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGTGTCTCTGGCTCTGTG	NA	False	NA	13	True	AATAAA	-19	NA	98917612	98986344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_98918521_98964895_98965110_98985191
transcript_52181.known	chr7	-	2128	6	FSM	ENSMUSG00000070436.13	ENSMUST00000207849.2	2128	6	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	741.154936568596	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATATCATTCTTTCTAAG	NA	False	NA	84	True	ATTAAA	-11	NA	99002321	98994601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99001030_99001075_99002259
transcript_52183.known	chr7	-	2274	5	FSM	ENSMUSG00000070436.13	ENSMUST00000169437.9	2274	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	667.492462504259	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACAAAGCCTGTGATTTATG	NA	False	NA	NA	False	ATTAAA	-30	NA	99002321	98994582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002088
transcript_52184.nic	chr7	-	2250	5	NIC	ENSMUSG00000070436.13	novel	2128	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	88	junction_4	649.473777376731	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATATCATTCTTTCTAAG	NA	False	NA	84	True	ATTAAA	-11	NA	99002321	98994601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002093
transcript_52185.known	chr7	-	2215	5	FSM	ENSMUSG00000070436.13	ENSMUST00000094154.6	2215	5	0	0	0	0	multi-exon	FALSE	canonical	3	1409	junction_4	114.233313879971	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTCTTTCTAAGACAAAG	NA	False	NA	90	True	ATTAAA	-17	NA	99002446	98994595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_98995630_98996131_98996365_98996472_98996572_98998009_98998672_99002259
transcript_52189.known	chr7	-	952	6	FSM	ENSMUSG00000030744.14	ENSMUST00000107096.2	952	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	5578.96687210096	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGATTAAACTCATGAGTATG	8422	False	NA	-20	True	AATAAA	-21	NA	99132858	99127110	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_99127523_99129110_99129271_99130903_99130999_99131467_99131562_99131776_99131908_99132798
transcript_52190.known	chr7	-	3183	4	FSM	ENSMUSG00000030744.14	ENSMUST00000128725.2	3183	4	0	0	0	0	multi-exon	FALSE	canonical	3	13120	junction_3	644.451877351771	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAGACAAGGCCTGACT	8423	False	NA	-45	True	AATAAA	-25	NA	99132857	99128099	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_99130999_99131467_99131562_99131776_99131908_99132798
transcript_52194.known	chr7	-	1553	6	FSM	ENSMUSG00000035227.8	ENSMUST00000208477.2	1553	6	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_5	975.780180163545	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGGAGTCTTGAAAGAAGG	NA	False	NA	-2	True	AATAAA	-19	NA	99508066	99488109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99498363_99498460_99507970
transcript_52195.known	chr7	-	1610	6	FSM	ENSMUSG00000035227.8	ENSMUST00000209032.2	1610	6	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_4	1023.35436677624	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGTGGAGTCTTGAAAGAAG	NA	False	NA	-3	True	AATAAA	-18	NA	99508118	99488110	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99505619_99505722_99507970
transcript_52202.known	chr7	-	2909	5	FSM	ENSMUSG00000035227.8	ENSMUST00000036274.8	2909	5	0	0	0	0	multi-exon	FALSE	canonical	2	1599	junction_2	370.901856964885	1110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTCTTTTCCTTTCAGTA	NA	False	NA	NA	False	AATAAA	-19	NA	99508184	99486775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_99489091_99493906_99494042_99497505_99497667_99498182_99498267_99507970
transcript_52209.known	chr7	-	688	4	FSM	ENSMUSG00000035227.8	ENSMUST00000208939.2	688	4	0	0	0	0	multi-exon	FALSE	canonical	2	1599	junction_1	426.888744288251	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGATTTATTTATTTATTAT	NA	False	NA	NA	False	NA	NA	NA	99508083	99493711	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_99494042_99497505_99497667_99498182_99498267_99507970
transcript_52211.known	chr7	-	3069	12	FSM	ENSMUSG00000030726.17	ENSMUST00000032969.14	3069	12	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_4	47.2898570362863	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGGTGCGAGTTGGAGT	NA	False	NA	-4	True	AATAAA	-18	NA	99770772	99731317	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742689_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99768880_99768937_99770570
transcript_52216.known	chr7	-	1716	13	FSM	ENSMUSG00000030726.17	ENSMUST00000208670.2	1716	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	223.707584434085	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCCTGCCTAGGAGAATT	NA	False	NA	-11	True	TATAAA	-16	NA	99770673	99732617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_99733062_99737270_99737350_99738858_99738963_99742578_99742689_99745579_99745743_99748670_99748744_99749626_99749889_99755769_99755903_99757718_99757759_99761476_99761580_99768880_99768937_99769103_99769150_99770570
transcript_52217.known	chr7	+	8834	14	FSM	ENSMUSG00000030729.18	ENSMUST00000084935.11	8834	14	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_8	2.32557176274323	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCATGAGTGTCTATGCAC	NA	False	NA	14	True	AATAAA	-14	NA	99876600	99928074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_99877242_99899498_99899667_99901391_99901499_99902439_99902525_99904740_99904825_99909090_99909285_99910806_99910997_99911272_99911371_99912117_99912296_99915871_99915966_99916692_99916823_99917323_99917514_99919534_99919669_99921533
transcript_52221.known	chr7	-	2772	14	FSM	ENSMUSG00000030718.10	ENSMUST00000032963.10	2772	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_12	101.852195962999	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTCTGAGGAGCTGTCCT	NA	False	NA	-8	True	AATAAA	-17	NA	100021514	99975943	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_99977090_99978241_99978310_99981064_99981130_99983134_99983180_99984254_99984385_99987576_99987701_99990237_99990304_99991052_99991144_99994158_99994314_99997011_99997064_99997328_99997387_100003915_100004009_100004474_100004569_100020929
transcript_52230.known	chr7	+	1391	2	FSM	ENSMUSG00000044881.8	ENSMUST00000054310.4	1391	2	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_1	0	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACCTAGTCTGCTTCTCAT	7571	False	NA	NA	False	NA	NA	NA	100186306	100189576	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_100186400_100188278
transcript_52231.known	chr7	+	742	2	FSM	ENSMUSG00000044881.8	ENSMUST00000120454.3	742	2	0	0	0	0	multi-exon	FALSE	canonical	2	17	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTCAAAGGAGTGAACTCG	7703	False	NA	-4	True	AATAAA	-5	NA	100186438	100188986	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_100186473_100188278
transcript_52233.known	chr7	-	4285	8	FSM	ENSMUSG00000030706.18	ENSMUST00000150042.8	4285	8	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_4	76.5855530682877	454	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTGTTGCTTGAGTGGA	NA	False	NA	NA	False	ATTAAA	-11	NA	100232309	100194957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_100198590_100199746_100199837_100201785_100201889_100208954_100209125_100214400_100214487_100220458_100220497_100223668_100223722_100232196
transcript_52241.known	chr7	-	1911	8	FSM	ENSMUSG00000030701.18	ENSMUST00000116287.9	1911	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	7.51868420968044	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGGCTTTGCTTGTTT	NA	False	NA	-2	True	AATAAA	-16	NA	100307663	100293106	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_100294277_100294776_100294877_100299134_100299240_100302860_100302901_100303808_100303912_100304455_100304609_100305941_100306018_100307499
transcript_52243.known	chr7	-	1806	7	FSM	ENSMUSG00000030701.18	ENSMUST00000107044.10	1806	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	4.3365372770859	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAACTGGCTTTGCTTGTTT	NA	False	NA	-2	True	AATAAA	-16	NA	100307663	100293106	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_100294277_100294776_100294877_100302860_100302901_100303808_100303912_100304455_100304609_100305941_100306018_100307499
transcript_52244.known	chr7	-	2851	11	FSM	ENSMUSG00000008318.11	ENSMUST00000008462.11	2851	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	6.09590026165127	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAACGAGCTTTTTTTCTGT	2158	False	NA	NA	False	NA	NA	NA	100512653	100495053	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_100496485_100496602_100496802_100497225_100497481_100497628_100497711_100498005_100498087_100499271_100499530_100500299_100500380_100500560_100500728_100500846_100500922_100502252_100502323_100512500
transcript_52246.known	chr7	+	4316	20	FSM	ENSMUSG00000030691.16	ENSMUST00000098250.10	4316	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_17	7.64481610612047	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATAAAAAATGAAATTAAGT	NA	False	NA	-7	True	TATAAA	-10	NA	100757981	100933589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_100758247_100759945_100760044_100788357_100788404_100826350_100826428_100835594_100835740_100840873_100841008_100846086_100846142_100847687_100847817_100883078_100883202_100893327_100893424_100899651_100899769_100902736_100902842_100908818_100908981_100920776_100920912_100925824_100925909_100926032_100926211_100926616_100926838_100927557_100927688_100927778_100927862_100931656
transcript_52247.known	chr7	+	1155	9	FSM	ENSMUSG00000030691.16	ENSMUST00000137196.8	1155	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	8.89434511361011	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTATTTATTTTATTTAT	NA	False	NA	NA	False	AATAAA	-24	NA	100757982	100853134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_100758247_100759945_100760044_100788357_100788404_100826350_100826428_100835594_100835740_100840873_100841008_100846086_100846142_100847687_100847817_100852927
transcript_52248.known	chr7	-	6459	18	FSM	ENSMUSG00000047767.18	ENSMUST00000120267.9	6459	18	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_10	9.70606060442378	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCTAGATACTATTTAAAT	8377	False	NA	NA	False	NA	NA	NA	100951295	100934527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_100939142_100939376_100939479_100939569_100939618_100939788_100939939_100940693_100940800_100941085_100941207_100941314_100941387_100941560_100941632_100942579_100942686_100943082_100943192_100944065_100944129_100945327_100945442_100945714_100945781_100945963_100946216_100946366_100946441_100948212_100948316_100949318_100949419_100951107
transcript_52249.known	chr7	-	2083	17	FSM	ENSMUSG00000047767.18	ENSMUST00000122116.8	2083	17	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_10	7.54750579661917	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTTGCCTCTTTGAAGCA	8394	False	NA	-2	True	NA	NA	NA	100951278	100938823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_100939142_100939376_100939479_100939569_100939618_100939788_100939939_100940693_100940800_100941085_100941207_100941314_100941387_100941560_100941632_100942579_100942686_100943082_100943192_100945327_100945442_100945714_100945781_100945963_100946216_100946366_100946441_100948212_100948316_100949318_100949419_100951107
transcript_52253.known	chr7	+	1400	7	FSM	ENSMUSG00000030688.16	ENSMUST00000032927.14	1400	7	0	0	0	0	multi-exon	TRUE	canonical	3	28	junction_2	26.7581763205193	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCAGCTCTTTGTGCCTGCT	NA	False	NA	7	True	AATAAA	-18	NA	100970319	100995515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_100970560_100970920_100971241_100991704_100991853_100992390_100992495_100993123_100993242_100994841_100994895_100995098
transcript_52254.known	chr7	+	3693	21	FSM	ENSMUSG00000032812.19	ENSMUST00000098243.4	3693	21	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	25.1838738084513	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGTGCCTTCCTGTCAGTT	NA	False	NA	NA	False	TATAAA	-14	NA	101043574	101061793	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101043675_101043940_101044116_101045267_101045403_101047502_101047639_101047902_101048006_101048685_101048882_101049189_101049242_101049334_101049499_101049598_101049812_101050089_101050196_101050596_101050745_101050829_101050917_101050998_101051068_101051265_101051384_101053171_101053286_101053486_101053633_101057253_101057337_101058320_101058372_101058497_101058562_101060126_101060277_101060510
transcript_52255.known	chr7	+	2287	17	FSM	ENSMUSG00000001829.18	ENSMUST00000106998.8	2287	17	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	246.748226943984	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAATCCACCTTGCCCTCAT	NA	False	NA	18	True	AATAAA	-24	NA	101312911	101437017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101360617_101360708_101371911_101372041_101400440_101400539_101412787_101412903_101422286_101422365_101423398_101423455_101427778_101427824_101428408_101428571_101434534_101434692_101435306_101435381_101435493_101435614_101435852_101435958_101436711
transcript_52256.known	chr7	+	4627	16	FSM	ENSMUSG00000001829.18	ENSMUST00000001884.14	4627	16	0	0	0	0	multi-exon	FALSE	canonical	3	662	junction_8	67.7342519622745	224	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTGTGTGAGTGTGTCT	NA	False	NA	NA	False	NA	NA	NA	101312839	101439375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101313421_101316454_101316507_101336494_101336582_101355689_101355794_101371911_101372041_101400440_101400539_101412787_101412903_101422286_101422365_101423398_101423455_101427778_101427824_101428408_101428571_101434534_101434692_101435306_101435381_101435493_101435614_101435852_101435958_101436711
transcript_52262.known	chr7	-	4730	29	FSM	ENSMUSG00000032737.14	ENSMUST00000165052.8	4730	29	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_28	22.1558429663829	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACCATTTTGTTCCGTTC	NA	False	NA	-8	True	AATAAA	-36	NA	101487010	101471845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_101472611_101472719_101472854_101473099_101473767_101475167_101475309_101475399_101475479_101475712_101475869_101475960_101476049_101476457_101476547_101476646_101476761_101477405_101477496_101477610_101477693_101477967_101478057_101478155_101478256_101478360_101478500_101478782_101478880_101479259_101479378_101479881_101480079_101480177_101480281_101480573_101480681_101480765_101480917_101481019_101481119_101481234_101481325_101481427_101481522_101481681_101481823_101482056_101482178_101482742_101482894_101482981_101483046_101485777_101486159_101486927
transcript_52266.known	chr7	+	3103	6	FSM	ENSMUSG00000030649.19	ENSMUST00000144207.9	3103	6	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	109.312396369305	296	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAACTTGGTCCAGACTCCTC	7826	False	NA	10	True	NA	NA	NA	101545623	101551056	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101545658_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
transcript_52270.nnic	chr7	+	830	6	NNC	ENSMUSG00000030649.19	novel	2797	5	NA	NA	-116	0	at_least_one_novel_splicesite	FALSE	canonical	3	40	junction_1	204.430330430687	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTCTATTCCCTGTTTGT	8156	False	NA	24	True	AATAAA	-24	NA	101545953	101548750	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_101546021_101546939_101547025_101547148_101547279_101547760_101547821_101548106_101548245_101548400
transcript_52281.nic	chr7	-	1196	6	NIC	ENSMUSG00000001827.13	novel	1286	7	NA	NA	-107	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_5	123.544971569061	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	3118	False	NA	0	True	AATAAA	-31	NA	101518332	101507537	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517759_101518199
transcript_52282.nic	chr7	-	1346	6	ISM	ENSMUSG00000001827.13	ENSMUST00000106986.9	1286	7	1244	0	112	0	3prime_fragment	FALSE	canonical	3	40	junction_5	113.141327550988	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	2804	False	NA	0	True	AATAAA	-31	NA	101518646	101507537	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604_101517759_101518363
transcript_52285.known	chr7	+	937	5	FSM	ENSMUSG00000030649.19	ENSMUST00000032884.16	937	5	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	120.728000066265	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCCAATGTCTATTCCCTG	7837	False	NA	19	True	AATAAA	-19	NA	101545634	101548745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101545658_101546939_101547025_101547148_101547279_101547760_101547821_101548106
transcript_52287.known	chr7	+	650	5	FSM	ENSMUSG00000030649.19	ENSMUST00000106973.8	650	5	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	224.489420686143	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCCAGGTGTGGTCCCT	7825	False	NA	-39	True	NA	NA	NA	101545622	101548687	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101545658_101547148_101547279_101547760_101547821_101548106_101548245_101548400
transcript_52290.known	chr7	+	818	5	FSM	ENSMUSG00000030649.19	ENSMUST00000143835.8	818	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	227.058775430504	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGTGTAGGGGAGTGCCT	8370	False	NA	NA	False	NA	NA	NA	101546167	101548249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101546568_101546939_101547025_101547148_101547279_101547760_101547821_101548106
transcript_52294.known	chr7	+	1119	5	FSM	ENSMUSG00000030842.13	ENSMUST00000033131.12	1119	5	0	0	0	0	multi-exon	FALSE	canonical	3	733	junction_4	69.0230939613692	299	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCTCTGTCCTGCCCACT	7027	False	NA	28	True	GATAAA	-32	NA	101555110	101561110	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101555248_101558870_101559017_101559235_101559314_101559626_101559754_101560479
transcript_52298.known	chr7	-	1039	5	FSM	ENSMUSG00000001827.13	ENSMUST00000106982.8	1039	5	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	136.80711787038	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	4836	False	NA	0	True	AATAAA	-31	NA	101516614	101507537	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101516484
transcript_52299.nic	chr7	-	1836	5	ISM	ENSMUSG00000001827.13	ENSMUST00000106986.9	1286	7	1359	0	0	0	intron_retention	FALSE	canonical	3	257	junction_4	35.4788669492136	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	2919	False	NA	0	True	AATAAA	-31	NA	101518531	101507537	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131_101513302_101517604
transcript_5230.nic	chr10	-	1512	7	ISM	ENSMUSG00000020048.14	ENSMUST00000020238.14	2825	18	-413	7509	-413	3597	5prime_fragment	FALSE	canonical	3	3024	junction_4	197.189418242122	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAGAAGAAAAGAAACCAAA	NA	False	NA	3	True	NA	NA	NA	86541786	86534212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_86534303_86534447_86534560_86537560_86537893_86538772_86538890_86539323_86539466_86540157_86540261_86541170
transcript_52301.known	chr7	-	821	5	FSM	ENSMUSG00000064307.14	ENSMUST00000106966.8	821	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.93700393700591	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAAGTCCCCTGTACCTT	2525	False	NA	NA	False	AATAAA	-22	NA	101583075	101562196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_101562420_101562641_101562791_101564768_101564975_101569843_101569982_101582970
transcript_52308.known	chr7	-	835	4	FSM	ENSMUSG00000064307.14	ENSMUST00000106963.2	835	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	6.16441400296898	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTCAGTGGAGTCACCA	2563	False	NA	NA	False	NA	NA	NA	101583037	101562380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_101562791_101564768_101564975_101569843_101569982_101582956
transcript_52310.known	chr7	-	960	4	FSM	ENSMUSG00000001827.13	ENSMUST00000106981.8	960	4	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_2	18.9267594221045	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGGTGTGAATGAGAATG	8098	False	NA	0	True	AATAAA	-31	NA	101513352	101507537	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_101507952_101508303_101508440_101508572_101508762_101513131
transcript_52311.known	chr7	+	836	6	FSM	ENSMUSG00000030649.19	ENSMUST00000035395.14	836	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	222.801615793064	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAATGTCTATTCCCTGTT	7749	False	NA	21	True	AATAAA	-21	NA	101545546	101548747	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101545658_101546939_101546995_101547153_101547279_101547760_101547821_101548106_101548245_101548400
transcript_52312.known	chr7	-	873	6	FSM	ENSMUSG00000064307.14	ENSMUST00000078448.11	873	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	5.00399840127872	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAAGTCCCCTGTACCTT	2536	False	NA	NA	False	AATAAA	-22	NA	101583064	101562196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_101562420_101562641_101562791_101564768_101564975_101569843_101569982_101570710_101570774_101582970
transcript_52314.known	chr7	-	2249	9	FSM	ENSMUSG00000070426.13	ENSMUST00000096639.12	2249	9	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_4	49.7203114933927	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGCCTTTTTTTTTTTGCC	NA	False	NA	0	True	AATAAA	-34	NA	101714365	101668343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714272
transcript_52315.known	chr7	-	2344	9	FSM	ENSMUSG00000070426.13	ENSMUST00000089052.11	2344	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_8	114.601483410993	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCTGGACACGCATTTGC	NA	False	NA	-15	True	AATAAA	-19	NA	101714676	101668358	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_101669700_101672518_101672621_101673219_101673354_101678218_101678340_101680700_101680809_101684513_101684669_101688756_101688899_101691833_101691872_101714473
transcript_52328.known	chr7	+	2298	11	FSM	ENSMUSG00000099481.7	ENSMUST00000094130.4	2298	11	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	17.4482090771517	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATAAAAGAGAATGCTA	NA	False	NA	NA	False	GGGGCT	-7	NA	101714964	101732288	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101715012_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
transcript_5233.known	chr10	+	1622	3	FSM	ENSMUSG00000097412.3	ENSMUST00000218095.2	1622	3	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_1	95.5	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTATGTGTATGAGT	NA	False	NA	1	True	AGTAAA	-10	NA	86521388	86525818	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_86521473_86521743_86521861_86524397
transcript_52338.known	chr7	+	3131	10	FSM	ENSMUSG00000099481.7	ENSMUST00000106950.8	3131	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	31.0606734006004	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATGTGTTGCCGATCTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	101714717	101732969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101715012_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939_101728026_101728211_101728385_101729735_101729812_101730689_101730818_101731247
transcript_52340.nic	chr7	+	2639	7	ISM	ENSMUSG00000099481.7	ENSMUST00000094130.4	2298	11	-267	2771	-20	15	intron_retention	FALSE	canonical	3	50	junction_1	21.6544837543329	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAATTGAGCAGACAG	NA	False	NA	NA	False	AAAAAG	-36	NA	101714697	101729517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_101715012_101719103_101719199_101720393_101720569_101722381_101722524_101725003_101725160_101726955_101727135_101727939
transcript_52343.known	chr7	+	1425	5	FSM	ENSMUSG00000030996.9	ENSMUST00000033300.4	1425	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGCAATGATCTGTGAG	NA	False	NA	NA	False	AATAAA	-23	NA	101750949	101760363	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101750999_101755466_101755573_101755873_101756640_101757933_101757976_101759901
transcript_52344.known	chr7	-	4052	23	FSM	ENSMUSG00000063550.9	ENSMUST00000070165.7	4052	23	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_13	31.0306766371922	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACATCTCAGGAAAATCC	9998	False	NA	-5	True	AATAAA	-15	NA	101859327	101783409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829583_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
transcript_52345.known	chr7	-	6694	33	FSM	ENSMUSG00000063550.9	ENSMUST00000210682.2	6694	33	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_23	43.7886324967736	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTGGTATTGACTTTCT	9970	False	NA	-6	True	AATAAA	-20	NA	101859383	101768604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_101769879_101769965_101770078_101772744_101772900_101773359_101773602_101774309_101774532_101775656_101775800_101776970_101777115_101778150_101778309_101779022_101779290_101781838_101782069_101783770_101784201_101787938_101788093_101788674_101788858_101794763_101794929_101796406_101796585_101801524_101801664_101802342_101802457_101803001_101803301_101806258_101806376_101809747_101809936_101812895_101813030_101818569_101818711_101825519_101825613_101829583_101829723_101832669_101832808_101834012_101834177_101835067_101835249_101835838_101835947_101841109_101841250_101843867_101844045_101844155_101844258_101844991_101845096_101859224
transcript_52355.known	chr7	+	1253	8	FSM	ENSMUSG00000030990.19	ENSMUST00000119816.9	1253	8	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_4	67.5063111184156	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACCACTTGGTGCTAAAA	651	False	NA	NA	False	NA	NA	NA	101872291	101886940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101884868_101884967_101885300_101885554_101885654_101885762_101886328_101886438_101886607
transcript_52359.known	chr7	+	2141	7	FSM	ENSMUSG00000030990.19	ENSMUST00000120879.8	2141	7	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	65.7809918509054	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	NA	False	NA	16	True	AATAAA	-23	NA	101859568	101887774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101859799_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
transcript_5236.known	chr10	+	1665	3	FSM	ENSMUSG00000097412.3	ENSMUST00000220419.2	1665	3	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	104.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGACTTATGTGTATGAGT	NA	False	NA	1	True	AGTAAA	-10	NA	86521474	86525818	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_86521602_86521743_86521861_86524397
transcript_52360.nic	chr7	+	2225	7	NIC	ENSMUSG00000030990.19	novel	2141	7	NA	NA	-45	0	intron_retention	FALSE	canonical	3	7	junction_1	59.4065559419909	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	NA	False	NA	16	True	AATAAA	-23	NA	101859496	101887774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_101859799_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
transcript_52361.known	chr7	+	2034	7	FSM	ENSMUSG00000030990.19	ENSMUST00000156529.8	2034	7	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_5	43.1689188601655	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	594	False	NA	16	True	AATAAA	-23	NA	101872234	101887774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
transcript_52362.known	chr7	+	1201	7	FSM	ENSMUSG00000030990.19	ENSMUST00000033292.14	1201	7	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_5	27.0657635317306	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCCTGAGGTTCACTAAGG	635	False	NA	NA	False	NA	NA	NA	101872275	101886970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101872358_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
transcript_52367.nic	chr7	+	2176	7	NIC	ENSMUSG00000030990.19	novel	2034	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	61.1201003489578	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	611	False	NA	16	True	AATAAA	-23	NA	101872251	101887774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_101872505_101872585_101872698_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
transcript_52372.nic	chr7	+	2083	6	NIC	ENSMUSG00000030990.19	novel	2141	7	NA	NA	-15	0	intron_retention	FALSE	canonical	2	2	junction_1	65.7309668269074	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	NA	False	NA	16	True	AATAAA	-23	NA	101859526	101887774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_101859799_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
transcript_52377.nic	chr7	+	1921	6	NIC	ENSMUSG00000030990.19	novel	2034	7	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	63.6948977548438	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	595	False	NA	16	True	AATAAA	-23	NA	101872235	101887774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_101872358_101875477_101875653_101885300_101885554_101885654_101885750_101886328_101886438_101886607
transcript_52378.nic	chr7	+	1933	6	NIC	ENSMUSG00000030990.19	novel	2034	7	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	55.9692772867401	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGTAGGTATGTTGCTCC	595	False	NA	16	True	AATAAA	-23	NA	101872235	101887774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_101872358_101875477_101875653_101885300_101885554_101885654_101885762_101886328_101886438_101886607
transcript_52382.known	chr7	+	669	5	FSM	ENSMUSG00000030990.19	ENSMUST00000133311.8	669	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	66.9066513883336	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCATGGGGATCTTCAAG	638	False	NA	NA	False	NA	NA	NA	101872278	101886869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101872358_101872585_101872698_101885654_101885762_101886328_101886438_101886607
transcript_52385.known	chr7	+	527	4	FSM	ENSMUSG00000030990.19	ENSMUST00000146996.8	527	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	70.0333254006024	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGGGCTTGGAGGGCACTG	NA	False	NA	NA	False	NA	NA	NA	101859578	101875652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101859799_101871988_101872009_101872585_101872698_101875477
transcript_52386.known	chr7	+	1033	3	FSM	ENSMUSG00000030990.19	ENSMUST00000124619.8	1033	3	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	18	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCGATGTCTGTTGTG	637	False	NA	NA	False	AGTAAA	-12	NA	101872277	101876318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101872358_101872585_101872698_101875477
transcript_52388.known	chr7	-	1269	2	FSM	ENSMUSG00000073982.12	ENSMUST00000098230.11	1269	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTGGCTCCTCCCTATGTG	6360	False	NA	-2	True	AATAAA	-18	NA	101899330	101888329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_101889520_101899251
transcript_52389.known	chr7	+	2504	3	FSM	ENSMUSG00000030987.6	ENSMUST00000210266.2	2504	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	11	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAACAAAACAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	101917025	102036931	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_101917761_102003707_102003839_102035293
transcript_52392.known	chr7	+	3997	19	FSM	ENSMUSG00000030978.11	ENSMUST00000033283.10	3997	19	0	0	0	0	multi-exon	FALSE	canonical	3	773	junction_6	74.8152456899951	154	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATGGTGGCTATGAACGGC	NA	False	NA	NA	False	AATAAA	-12	NA	102090901	102118978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_102091251_102092193_102092283_102095756_102095935_102097007_102097109_102098401_102098462_102099242_102099283_102100107_102100271_102103702_102103845_102105677_102105762_102106358_102106521_102106766_102106847_102108595_102108798_102109497_102109648_102109836_102110059_102110813_102110891_102112852_102112989_102114924_102115021_102116084_102116274_102117501
transcript_52397.known	chr7	-	2793	8	FSM	ENSMUSG00000030966.14	ENSMUST00000033264.12	2793	8	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	2.61861468283191	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGCTTCTTTCATTCTACC	NA	False	NA	NA	False	AATAAA	-16	NA	102214693	102207127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_102208871_102209174_102209276_102209799_102209823_102210994_102211226_102212472_102212569_102212900_102213333_102213478_102213548_102214595
transcript_52399.known	chr7	-	2388	7	FSM	ENSMUSG00000073968.5	ENSMUST00000082175.7	2388	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	1.21335164821342	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGATCACGAGTCTGCCTG	NA	False	NA	NA	False	ATTAAA	-28	NA	102336534	102326788	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_102328045_102328242_102328344_102328880_102328904_102329343_102329605_102330869_102330966_102333254_102333719_102336347
transcript_52400.known	chr7	-	351	1	FSM	ENSMUSG00000083854.4	ENSMUST00000120890.2	351	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTAATCTGATGAATTTTAA	NA	False	NA	NA	False	AATGAA	-37	NA	103532211	103531860	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_103531900_103532200
transcript_52405.nnic	chr7	+	2779	9	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	-34	-1038	intron_retention	TRUE	canonical	0	0	junction_8	239.859203492382	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGTAGCTTTGGTTTTAA	NA	False	NA	19	True	AATAAA	-24	NA	103867965	103883321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825
transcript_52406.nnic	chr7	+	3569	9	NNC	ENSMUSG00000072244.12	novel	3827	8	NA	NA	-34	-248	intron_retention	FALSE	canonical	0	0	junction_8	239.859203492382	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGAGTCTTCTTACTCT	NA	False	NA	13	True	AATAAA	-14	NA	103867965	103884111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573_103882780_103882825
transcript_52409.known	chr7	+	3827	8	FSM	ENSMUSG00000072244.12	ENSMUST00000098180.10	3827	8	0	0	0	0	multi-exon	FALSE	canonical	2	421	junction_3	109.572825470701	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGGGAGACTTGAAGGTGCA	NA	False	NA	NA	False	AATAAA	-18	NA	103868001	103884359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_103868091_103874713_103875188_103876015_103876112_103877352_103877584_103879934_103879958_103880995_103881097_103881319_103881347_103881573
transcript_5241.nic	chr10	-	3244	11	NIC	ENSMUSG00000035365.16	novel	3594	11	NA	NA	-6	0	intron_retention	FALSE	canonical	3	53	junction_4	10.555093557141	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTGGGTGGTTTATACTT	NA	False	NA	-11	True	ATTAAA	-13	NA	87982809	87927293	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982713
transcript_52414.known	chr7	+	1490	3	FSM	ENSMUSG00000072244.12	ENSMUST00000144538.2	1490	3	0	0	0	0	multi-exon	FALSE	canonical	3	703	junction_1	31	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	103867999	103876940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_103868091_103874713_103875188_103876015
transcript_52415.known	chr7	+	2590	8	FSM	ENSMUSG00000056144.15	ENSMUST00000060315.12	2590	8	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_3	5.3642809587196	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAATTGAATCTGTTCATT	NA	False	NA	7	True	ATTAAA	-15	NA	103893665	103911441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_103893814_103896737_103897358_103897893_103897990_103898601_103898833_103908619_103908643_103909324_103909426_103909684_103909712_103910097
transcript_52416.known	chr7	-	3521	13	FSM	ENSMUSG00000044465.20	ENSMUST00000122327.7	3521	13	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_12	109.388038905337	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGTGCTCATTCTTCT	NA	False	NA	-12	True	TATAAA	-12	NA	105049239	105027818	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034194_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105040783_105040875_105049090
transcript_52417.known	chr7	-	3443	12	FSM	ENSMUSG00000044465.20	ENSMUST00000048079.14	3443	12	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_4	97.8877751760945	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGTGCTCATTCTTCTT	NA	False	NA	-11	True	TATAAA	-13	NA	105049209	105027817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034152_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105049090
transcript_52418.known	chr7	-	10853	12	FSM	ENSMUSG00000044465.20	ENSMUST00000179474.9	10853	12	0	0	0	0	multi-exon	TRUE	canonical	3	88	junction_4	97.1164419950871	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTGTTCACATCTCAG	NA	False	NA	0	True	AATAAA	-16	NA	105049261	105020417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_105028337_105030286_105030450_105030605_105030785_105032987_105033780_105034194_105034359_105034549_105034630_105037390_105037559_105037762_105037850_105037985_105038145_105038460_105039100_105039227_105039560_105049090
transcript_5242.nic	chr10	-	2632	11	NIC	ENSMUSG00000035365.16	novel	3594	11	NA	NA	-6	-612	combination_of_known_junctions	FALSE	canonical	3	53	junction_4	10.555093557141	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGAAAAATCCCCATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	87982809	87927905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982713
transcript_52420.known	chr7	+	2573	5	FSM	ENSMUSG00000030898.16	ENSMUST00000033189.6	2573	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	1.6583123951777	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTAAGGCTCAGATTATTCG	NA	False	NA	NA	False	GATAAA	-15	NA	105074937	105085546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_105075383_105082789_105083042_105083201_105083452_105083726_105083903_105084096
transcript_52421.known	chr7	-	1662	2	FSM	ENSMUSG00000037060.4	ENSMUST00000047040.4	1662	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTTTAGATCTTGTTA	NA	False	NA	NA	False	AATAAA	-18	NA	105131507	105129289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_105130427_105130982
transcript_52422.known	chr7	+	2412	6	FSM	ENSMUSG00000037049.10	ENSMUST00000046983.10	2412	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	5.53534100123922	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTTCCTATTTCTTCTTCC	NA	False	NA	11	True	AATAAA	-21	NA	105203566	105207596	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_105204045_105204428_105205202_105205713_105205886_105206124_105206202_105206556_105206703_105206830
transcript_52425.known	chr7	-	2878	14	FSM	ENSMUSG00000037032.17	ENSMUST00000189378.7	2878	14	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_6	14.1718113410527	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAAGTCTGTCTGCGCTGCT	NA	False	NA	-42	True	NA	NA	NA	105230698	105207709	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_105208258_105208338_105208516_105208649_105208766_105214178_105214263_105214507_105214593_105214739_105214855_105215257_105215386_105215754_105215905_105216289_105216354_105216460_105216547_105216634_105216692_105216784_105216961_105222888_105223624_105230341
transcript_52426.known	chr7	-	2712	14	FSM	ENSMUSG00000037032.17	ENSMUST00000191011.7	2712	14	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_13	40.0285401141316	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTCTTCCTGTGCTCAT	NA	False	NA	-22	True	AATAAA	-17	NA	105230860	105207689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_105208258_105208338_105208516_105208649_105208766_105214178_105214263_105214507_105214593_105214739_105214855_105215257_105215386_105215754_105215905_105216289_105216354_105216460_105216547_105216634_105216692_105216784_105216961_105222888_105223624_105230689
transcript_52429.known	chr7	-	2841	12	FSM	ENSMUSG00000036989.17	ENSMUST00000106789.8	2841	12	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_9	7.22140985754018	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGCTAGGTTCTTGTGG	NA	False	NA	0	True	AATAAA	-17	NA	105282744	105259854	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_105260418_105260535_105260677_105261813_105261885_105262104_105262274_105262455_105262624_105266647_105266752_105266948_105267682_105267872_105268054_105268265_105268418_105268589_105268822_105274612_105274779_105282583
transcript_5243.nic	chr10	-	1888	11	NIC	ENSMUSG00000035365.16	novel	3594	11	NA	NA	-6	-1356	combination_of_known_junctions	FALSE	canonical	3	53	junction_4	10.555093557141	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTAAGATATGTTGTGGTT	NA	False	NA	NA	False	TTTAAA	-1	NA	87982809	87928649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_87929049_87929456_87929590_87946160_87946243_87947457_87947637_87950382_87950564_87960669_87960825_87962018_87962190_87968955_87969061_87975727_87975959_87979801_87979958_87982713
transcript_52433.known	chr7	-	1141	8	FSM	ENSMUSG00000030881.16	ENSMUST00000209550.2	1141	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	44.7975035747597	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTTGGCTATCAAGAAGG	NA	False	NA	NA	False	NA	NA	NA	105289523	105285431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287025_105287248_105287415_105287535_105288215_105288301_105288531_105288673_105289451
transcript_52434.known	chr7	-	3275	8	FSM	ENSMUSG00000030881.16	ENSMUST00000131446.8	3275	8	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_3	9.16515138991168	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTTTTATTGTATTGTAC	NA	False	NA	NA	False	NA	NA	NA	105289623	105283409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287025_105287248_105287415_105287535_105288215_105288313_105288531_105288673_105289451
transcript_52439.known	chr7	+	529	4	FSM	ENSMUSG00000089847.9	ENSMUST00000210350.2	529	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	163.903087897154	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTTCTTGTCTTCAGAG	NA	False	NA	NA	False	AATAAA	-17	NA	105289757	105291056	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_105289830_105289968_105290065_105290234_105290368_105290828
transcript_52440.known	chr7	+	694	4	FSM	ENSMUSG00000089847.9	ENSMUST00000058333.10	694	4	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_3	126.499011853848	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAAGTGCTTTCTTGTCT	NA	False	NA	NA	False	AATAAA	-11	NA	105289654	105291050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_105289830_105289968_105290065_105290234_105290436_105290828
transcript_52441.known	chr7	+	3273	3	FSM	ENSMUSG00000089847.9	ENSMUST00000106783.8	3273	3	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	22.5	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTGTTTCCTTTCTTCCT	NA	False	NA	NA	False	AATAAA	-17	NA	105289262	105292844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_105289830_105289968_105290065_105290234
transcript_52442.known	chr7	+	629	3	FSM	ENSMUSG00000089847.9	ENSMUST00000140577.2	629	3	0	0	0	0	multi-exon	FALSE	canonical	3	108	junction_2	121.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCCTCTAAGAATTCAGG	NA	False	NA	NA	False	NA	NA	NA	105289795	105290956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_105289830_105289968_105290436_105290828
transcript_52443.known	chr7	+	1083	2	FSM	ENSMUSG00000089847.9	ENSMUST00000151193.2	1083	2	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAATTTACTCTCTTAGTAC	NA	False	NA	NA	False	NA	NA	NA	105289770	105290992	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_105289830_105289968
transcript_52444.known	chr7	+	373	2	FSM	ENSMUSG00000089847.9	ENSMUST00000209588.2	373	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTATTTGTCTATGGGTA	NA	False	NA	7	True	AATAAA	-16	NA	105289777	105290555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_105289830_105290234
transcript_52445.known	chr7	-	1772	8	FSM	ENSMUSG00000030881.16	ENSMUST00000033171.15	1772	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	44.3170396123207	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCCCAGTGAGGTCAATTTG	NA	False	NA	NA	False	AATAAA	-16	NA	105289521	105284827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_105285601_105286017_105286193_105286327_105286486_105287025_105287248_105287415_105287552_105288215_105288313_105288531_105288673_105289451
transcript_52446.known	chr7	+	1795	13	FSM	ENSMUSG00000030890.17	ENSMUST00000033182.10	1795	13	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	33.4937805171846	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCGTGTGGGGACAGAGGG	NA	False	NA	28	True	AATAAA	-18	NA	105385798	105392132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_105385924_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
transcript_52448.known	chr7	+	1749	13	FSM	ENSMUSG00000030890.17	ENSMUST00000163389.9	1749	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	93.7171794401764	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGGCTCGTGTGGGGACAGA	NA	False	NA	25	True	AATAAA	-15	NA	105385931	105392129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_105386014_105386307_105386445_105389383_105389550_105389719_105389816_105389977_105390075_105390166_105390251_105390354_105390441_105390580_105390691_105390786_105390915_105390993_105391116_105391203_105391304_105391413_105391545_105391719
transcript_52456.known	chr7	-	3053	7	FSM	ENSMUSG00000030888.15	ENSMUST00000033179.14	3053	7	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_4	21.202725191719	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAGGCATGTTTGGAGTCT	9803	False	NA	NA	False	AATAAA	-17	NA	105385988	105380936	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_105382351_105382558_105382656_105382738_105382846_105382974_105383105_105383206_105383661_105383896_105384264_105385504
transcript_52458.known	chr7	-	601	4	FSM	ENSMUSG00000043866.12	ENSMUST00000131683.8	601	4	0	0	0	0	multi-exon	FALSE	canonical	3	1257	junction_1	50.2084543567006	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGGGCTGATCCCTCCCAT	6718	False	NA	-30	True	AATAAA	-15	NA	105393289	105392102	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_105392271_105392432_105392548_105392634_105392700_105393036
transcript_52460.known	chr7	-	3558	13	FSM	ENSMUSG00000030894.6	ENSMUST00000033184.6	3558	13	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_12	25.3212690571912	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTTGTATTGTAAATGT	NA	False	NA	NA	False	NA	NA	NA	105401442	105394017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105400796_105400937_105401188_105401261_105401377
transcript_52462.nic	chr7	-	2321	12	NIC	ENSMUSG00000030894.6	novel	3687	12	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_10	89.1434909764649	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTGAGTGATTTTTTTT	NA	False	NA	4	True	AATAAA	-30	NA	105401453	105395125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105401188_105401261_105401377
transcript_52464.nic	chr7	-	2182	12	NIC	ENSMUSG00000030894.6	novel	3558	13	NA	NA	-11	-139	combination_of_known_junctions	FALSE	canonical	3	32	junction_10	89.1434909764649	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTGGCTGCAATCTATT	NA	False	NA	NA	False	NA	NA	NA	105401453	105395264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_105395980_105396149_105396276_105396593_105396753_105396865_105396987_105397788_105397859_105398089_105398279_105398431_105398631_105398743_105398920_105399066_105399195_105399386_105399538_105401188_105401261_105401377
transcript_52468.known	chr7	-	7300	3	FSM	ENSMUSG00000030879.11	ENSMUST00000124482.3	7300	3	0	0	0	0	multi-exon	FALSE	canonical	3	2255	junction_2	27.5	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTTCCTGTGATGGTAC	NA	False	NA	NA	False	ATTAAA	-39	NA	105460306	105452412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_105459352_105459656_105459726_105460014
transcript_52469.known	chr7	-	459	3	FSM	ENSMUSG00000030879.11	ENSMUST00000176498.2	459	3	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_2	1150.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCCCTCATAATGAGACCC	NA	False	NA	-113	True	NA	NA	NA	105460206	105458971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_105459352_105459656_105459726_105460196
transcript_52470.known	chr7	-	380	3	FSM	ENSMUSG00000030879.11	ENSMUST00000176887.2	380	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1127.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTAAAGTGCTAGCGCCTCG	NA	False	NA	NA	False	NA	NA	NA	105460235	105459327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_105459352_105459590_105459726_105460014
transcript_52476.known	chr7	-	1028	2	FSM	ENSMUSG00000030879.11	ENSMUST00000033170.7	1028	2	0	0	0	0	multi-exon	FALSE	canonical	3	2255	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATATTGACTTTCTTGTCCT	NA	False	NA	-28	True	GATAAA	-20	NA	105460203	105458886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_105459726_105460014
transcript_52477.known	chr7	+	3272	11	FSM	ENSMUSG00000016626.11	ENSMUST00000084763.5	3272	11	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_7	2.19089023002066	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGCCACAAGTGTCAT	NA	False	NA	NA	False	AGTAAA	-11	NA	106766196	106797300	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_106766289_106780365_106780453_106780877_106782460_106783934_106784109_106785754_106785920_106789229_106789401_106790265_106790437_106791652_106791824_106795248_106795420_106796353_106796525_106796983
transcript_52481.nnic	chr7	+	1134	5	NNC	ENSMUSG00000057215.7	novel	1294	6	NA	NA	-28	-4402	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_4	14.7880864211703	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTGTGTGTTTGTCCCA	NA	False	NA	12	True	AATAAA	-19	NA	106842200	106895201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_106842336_106883988_106884145_106884819_106884938_106891710_106891844_106894609
transcript_52482.nnic	chr7	+	1036	4	NNC	ENSMUSG00000057215.7	novel	1294	6	NA	NA	-28	-7266	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_3	13.7194104181711	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAACAGGCCAGCTTCA	NA	False	NA	NA	False	NA	NA	NA	106842200	106892337	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_106842336_106883988_106884145_106884819_106884938_106891710
transcript_52483.nnic	chr7	+	1001	4	NNC	ENSMUSG00000057215.7	novel	1294	6	NA	NA	-28	-4402	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	8.98146239020499	32	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATTGTGTGTTTGTCCCA	NA	False	NA	12	True	AATAAA	-19	NA	106842200	106895201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_106842336_106883988_106884145_106884819_106884938_106894609
transcript_52487.known	chr7	+	699	4	FSM	ENSMUSG00000051041.9	ENSMUST00000239087.2	699	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	2.35702260395516	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGCTGTGGATGAACACG	NA	False	NA	NA	False	NA	NA	NA	107166972	107189749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_107167102_107170243_107170533_107189354_107189550_107189663
transcript_52489.known	chr7	+	1685	3	FSM	ENSMUSG00000051041.9	ENSMUST00000120990.2	1685	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCACTGCCTTAAGTATCTT	NA	False	NA	NA	False	AATACA	-24	NA	107166652	107190301	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_107167102_107170243_107170533_107189354
transcript_5249.known	chr10	+	1267	10	FSM	ENSMUSG00000035351.17	ENSMUST00000052355.15	1267	10	0	0	0	0	multi-exon	FALSE	canonical	3	484	junction_1	64.7921653547559	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGTTCCTATTGTGTT	NA	False	NA	12	True	AATAAA	-20	NA	87982853	88014252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_87982935_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
transcript_52495.nnic	chr7	-	1360	10	NNC	ENSMUSG00000048065.9	novel	1178	9	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	9.77651506998175	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACAATGTGTGGATAT	NA	False	NA	-5	True	AATAAA	-19	NA	107357260	107349171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_107349604_107350373_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107356786_107356912_107357164
transcript_5250.known	chr10	+	1277	10	FSM	ENSMUSG00000035351.17	ENSMUST00000169309.3	1277	10	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	172.048514547568	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATATGTTCCTATTGTG	NA	False	NA	10	True	AATAAA	-18	NA	87982938	88014250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_87983032_87984023_87984242_87989385_87989511_87994719_87994793_87996737_87996833_88007856_88007948_88010247_88010430_88010744_88010796_88012934_88013029_88013995
transcript_52500.known	chr7	-	1178	9	FSM	ENSMUSG00000048065.9	ENSMUST00000208217.2	1178	9	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_8	13.026415470113	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCTCACAATGTGTGGATAT	NA	False	NA	-5	True	AATAAA	-19	NA	107357203	107349171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_107349604_107350373_107350474_107351537_107351624_107352422_107352507_107353052_107353183_107353910_107354018_107356117_107356191_107356391_107356519_107357164
transcript_52509.known	chr7	+	2514	8	FSM	ENSMUSG00000031029.7	ENSMUST00000033342.7	2514	8	0	0	0	0	multi-exon	FALSE	canonical	3	2245	junction_2	107.423632105296	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTTCTGCAGAGAGTACTA	NA	False	NA	NA	False	TATAAA	-14	NA	108533623	108542158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_108534015_108536952_108537024_108537242_108537323_108537615_108537754_108539396_108539489_108539850_108539988_108540100_108540215_108540667
transcript_52510.known	chr7	-	1633	6	FSM	ENSMUSG00000048330.15	ENSMUST00000120876.2	1633	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	14.7837748900611	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCTTATTCTTTGGGC	NA	False	NA	NA	False	NA	NA	NA	108682529	108637154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_108638091_108647157_108647301_108653571_108653666_108655950_108656024_108656989_108657217_108682369
transcript_52513.known	chr7	-	3258	5	FSM	ENSMUSG00000048330.15	ENSMUST00000133876.2	3258	5	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	4.55521678957215	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	108682518	108644588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_108647304_108653571_108653666_108655950_108656024_108656989_108657217_108682369
transcript_52515.known	chr7	-	912	4	FSM	ENSMUSG00000036111.9	ENSMUST00000207178.2	912	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	6.37704215656966	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGTACAGTCTGTCTTCT	NA	False	NA	-107	True	NA	NA	NA	108774414	108737881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_108738184_108739788_108739915_108742662_108742877_108774144
transcript_52520.nnic	chr7	-	2197	13	NNC	ENSMUSG00000031027.16	novel	2295	13	NA	NA	51224	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_11	19.7188573029304	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCAGTCCCTCACGTGT	NA	False	NA	-14	True	AATAAA	-26	NA	108986800	108878429	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108939575_108939687_108940495_108940847_108986659
transcript_52523.nnic	chr7	-	1920	11	NNC	ENSMUSG00000031027.16	novel	1304	11	NA	NA	51203	164	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_10	9.45568612000208	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATCCATTTCATGTAAAGGA	NA	False	NA	NA	False	AATAAA	-19	NA	108986821	108878265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108986659
transcript_52525.nnic	chr7	-	1756	11	NNC	ENSMUSG00000031027.16	novel	2295	13	NA	NA	51203	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_10	9.45568612000208	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCAGTCCCTCACGTGT	NA	False	NA	-14	True	AATAAA	-26	NA	108986821	108878429	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108928739_108928829_108930675_108930815_108935247_108935353_108937526_108937641_108986659
transcript_52530.nnic	chr7	-	1528	9	NNC	ENSMUSG00000031027.16	novel	2295	13	NA	NA	51203	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_6	19.1861766644634	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCAGTCCCTCACGTGT	NA	False	NA	-14	True	AATAAA	-26	NA	108986821	108878429	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_108879064_108911477_108911628_108920003_108920090_108920667_108920781_108924887_108924964_108926798_108926887_108935247_108935353_108937526_108937641_108986659
transcript_52535.known	chr7	+	1158	5	FSM	ENSMUSG00000046364.15	ENSMUST00000143107.2	1158	5	0	0	0	0	multi-exon	FALSE	canonical	3	7451	junction_1	3855.66202972978	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACATCTTTAAATCTGGAAG	NA	False	NA	20	True	AATAAA	-24	NA	109118353	109121574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_109118430_109118791_109118856_109119124_109119201_109119674_109119850_109120807
transcript_52537.nic	chr7	+	761	5	NIC	ENSMUSG00000046364.15	novel	1158	5	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	6920.42061582965	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118402	109120973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_109118683_109118791_109118856_109119124_109119201_109119674_109119850_109120807
transcript_52543.known	chr7	+	760	4	FSM	ENSMUSG00000046364.15	ENSMUST00000053298.8	760	4	0	0	0	0	multi-exon	FALSE	canonical	3	7451	junction_1	4009.72894622844	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCTTTGCATCCTT	NA	False	NA	2	True	ATTAAA	-14	NA	109118419	109120973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_109118430_109118791_109119201_109119674_109119850_109120807
transcript_52546.known	chr7	+	1028	6	FSM	ENSMUSG00000031023.6	ENSMUST00000033335.6	1028	6	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_1	91.1249691357972	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTTTATTGCTATTAAA	NA	False	NA	NA	False	AATAAA	-25	NA	109302896	109311396	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_109302984_109303152_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
transcript_52552.nic	chr7	+	950	5	NIC	ENSMUSG00000031023.6	novel	1028	6	NA	NA	26	0	intron_retention	FALSE	canonical	3	347	junction_1	28.0624304008046	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGCATCAATCTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	109302922	109311175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
transcript_52553.nic	chr7	+	1171	5	NIC	ENSMUSG00000031023.6	novel	1028	6	NA	NA	26	0	intron_retention	FALSE	canonical	3	347	junction_1	28.0624304008046	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCATTTTATTGCTATTAAA	NA	False	NA	NA	False	AATAAA	-25	NA	109302922	109311396	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_109303378_109304157_109304239_109306604_109306719_109308147_109308229_109310956
transcript_52554.nnic	chr7	+	749	5	NNC	ENSMUSG00000031023.6	novel	1028	6	NA	NA	23	0	intron_retention	FALSE	non_canonical	0	0	junction_1	175.074805440417	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGCATCAATCTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	109302981	109311175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_109303236_109304157_109304239_109306604_109306719_109308147_109308229_109310956
transcript_52560.known	chr7	-	1703	5	FSM	ENSMUSG00000031021.14	ENSMUST00000033333.13	1703	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_4	15.7698287879102	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAATGTTTCTGTTCTCCAG	NA	False	NA	2	True	AATAAA	-19	NA	109351486	109335040	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_109336199_109342753_109342889_109344516_109344626_109349219_109349312_109351277
transcript_52566.known	chr7	-	3840	7	FSM	ENSMUSG00000047554.15	ENSMUST00000094097.12	3840	7	0	0	0	0	multi-exon	TRUE	canonical	3	346	junction_6	24.644133852366	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGATAATTTTCCCACCAA	NA	False	NA	NA	False	AATAAA	-25	NA	109585658	109571393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_109574159_109575801_109575941_109577916_109578022_109578595_109578690_109580195_109580325_109581862_109581981_109585168
transcript_52574.known	chr7	+	4763	25	FSM	ENSMUSG00000066232.5	ENSMUST00000084731.5	4763	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	191.489515052391	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTTTGTGTTGTGTTTTTC	7198	False	NA	NA	False	AAGAAA	-2	NA	109617480	109655816	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_109617716_109626277_109626360_109628897_109629052_109630814_109630974_109636150_109636308_109638370_109638461_109639812_109639908_109640019_109640105_109641187_109641323_109641992_109642093_109643615_109643693_109643824_109643942_109645368_109645459_109645884_109646051_109646193_109646355_109647335_109647465_109648000_109648068_109648151_109648278_109648802_109648901_109649986_109650083_109650219_109650441_109650528_109650735_109651917_109652125_109653206_109653324_109654223
transcript_52577.known	chr7	+	3003	16	FSM	ENSMUSG00000061079.15	ENSMUST00000084727.11	3003	16	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_4	55.3423285861133	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACAATACTTTTTGTTTG	NA	False	NA	12	True	AATACA	-10	NA	109660916	109694594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_109660983_109668690_109668810_109669684_109669778_109670578_109670663_109671325_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688084_109690971_109691134_109692276_109692424_109693497
transcript_52580.known	chr7	+	2631	16	FSM	ENSMUSG00000061079.15	ENSMUST00000211798.2	2631	16	0	0	0	0	multi-exon	TRUE	canonical	3	74	junction_4	56.3191698171137	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGGCAGCTTGTGCCTGT	NA	False	NA	NA	False	ATTAAA	-27	NA	109660916	109694225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_109660983_109668690_109668810_109669684_109669778_109670578_109670663_109671328_109671410_109673274_109673472_109674847_109674923_109676263_109676384_109679474_109679551_109680998_109681125_109682397_109682578_109685319_109685548_109687934_109688084_109690971_109691134_109692276_109692424_109693497
transcript_52584.known	chr7	+	4027	12	FSM	ENSMUSG00000031015.9	ENSMUST00000033325.9	4027	12	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_6	36.1790771003727	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTAAACTGGTTACATTAA	NA	False	NA	77	True	ATTAAA	-20	NA	109820917	109882713	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_109821117_109842590_109842732_109854941_109855116_109863086_109863315_109865042_109865190_109866988_109867098_109869106_109869289_109872466_109872575_109873841_109874009_109878386_109878586_109879773_109879871_109880437
transcript_52586.known	chr7	+	1163	5	FSM	ENSMUSG00000031015.9	ENSMUST00000210743.2	1163	5	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_3	17.753520777581	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAATGCAGTAAGA	NA	False	NA	NA	False	ATTAAA	-6	NA	109820938	109865484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_109821117_109842590_109842732_109854941_109855116_109863086_109863315_109865042
transcript_52588.known	chr7	+	1670	4	FSM	ENSMUSG00000031015.9	ENSMUST00000210513.2	1670	4	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_3	8.83176086632785	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATTAAAAAAAAAATATACAC	NA	False	NA	NA	False	TTTAAA	-11	NA	109820961	109864286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_109821117_109842590_109842732_109854941_109855116_109863086
transcript_52589.known	chr7	+	1390	4	FSM	ENSMUSG00000030790.16	ENSMUST00000033054.10	1390	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.24721912892465	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTCTCGGTTCATGCAT	5113	False	NA	NA	False	AATAAA	-16	NA	110226867	110229027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_110227029_110227463_110227584_110227731_110227882_110228068
transcript_52590.known	chr7	+	3489	15	FSM	ENSMUSG00000005686.18	ENSMUST00000170374.8	3489	15	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	9.21539306745812	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTGAACTTTAGCTTTAT	NA	False	NA	NA	False	NA	NA	NA	110367412	110411126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_110367587_110377005_110377232_110387816_110388022_110390394_110390555_110392846_110393067_110394885_110395016_110399849_110400045_110401638_110401771_110402287_110402452_110402933_110403061_110404031_110404196_110405170_110405292_110406986_110407161_110409002_110409114_110409940
transcript_52592.known	chr7	-	4032	6	FSM	ENSMUSG00000030788.17	ENSMUST00000177236.8	4032	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_3	5.45527267879434	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGTAGGTGTTGGGAGTTT	NA	False	NA	0	True	ATTAAA	-22	NA	110443664	110412737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_110416058_110420460_110420569_110424423_110424606_110432943_110433053_110436283_110436478_110443545
transcript_52598.known	chr7	-	1080	4	FSM	ENSMUSG00000030788.17	ENSMUST00000176716.3	1080	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	52.332271751441	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGTTTATGTACTGAAGTG	NA	False	NA	NA	False	TTTAAA	-6	NA	110443609	110429455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_110430169_110432943_110433053_110436283_110436478_110443545
transcript_52599.known	chr7	+	4300	25	FSM	ENSMUSG00000005609.17	ENSMUST00000005749.6	4300	25	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_8	10.558616149856	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGAGTGCCTGTGTGTCCTCT	499	False	NA	31	True	AATAAA	-17	NA	110628157	110655584	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_110628389_110629420_110629520_110632897_110633138_110633554_110633673_110634494_110634585_110637592_110637742_110639761_110639870_110642022_110642131_110642232_110642470_110642623_110642714_110642820_110642950_110643042_110643227_110644583_110644673_110645460_110645647_110645722_110645811_110645969_110646119_110648470_110648588_110648716_110648863_110649640_110649713_110650151_110650288_110650656_110650804_110651508_110651667_110652588_110652686_110653020_110653134_110654565
transcript_52602.known	chr7	+	765	2	FSM	ENSMUSG00000005609.17	ENSMUST00000146709.2	765	2	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATATTTGTTCCTGCCTT	561	False	NA	NA	False	NA	NA	NA	110628219	110630016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_110628389_110629420
transcript_52603.known	chr7	-	7995	22	FSM	ENSMUSG00000005610.18	ENSMUST00000162415.9	7995	22	0	0	0	0	multi-exon	FALSE	canonical	3	4823	junction_9	518.544999107863	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAAAGAGAAGAAACACA	NA	False	NA	NA	False	NA	NA	NA	110682237	110666956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675486_110675601_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
transcript_52608.nic	chr7	-	3728	21	ISM	ENSMUSG00000005610.18	ENSMUST00000161051.8	3548	22	-42	0	-29	0	intron_retention	FALSE	canonical	3	1102	junction_8	1132.63140517999	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGTTGTACATGACTTCA	NA	False	NA	-19	True	AATAAA	-16	NA	110682266	110671138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_110671965_110673035_110673158_110673244_110673457_110673546_110673752_110673886_110674146_110674232_110674449_110674543_110674649_110674793_110674920_110675902_110676064_110676144_110676284_110676431_110676531_110676615_110676700_110676843_110676955_110677231_110677384_110677479_110677547_110677628_110677761_110678499_110678603_110679388_110679530_110680105_110680172_110680713_110680841_110681991
transcript_5261.known	chr10	+	1448	1	FSM	ENSMUSG00000035351.17	ENSMUST00000219859.2	1448	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAGAAAAAAAAATTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	87982888	87984336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_87982900_87984300
transcript_52617.nic	chr7	+	2556	9	ISM	ENSMUSG00000059263.10	ENSMUST00000106653.4	5540	28	69669	0	2467	0	3prime_fragment	FALSE	canonical	3	328	junction_8	23.3438964185502	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGTTATCTTAGTCATT	NA	False	NA	4	True	AATAAA	-16	NA	111692379	111710591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_111692694_111700944_111701121_111701645_111701727_111703156_111703273_111703556_111703676_111705985_111706117_111707642_111707691_111707780_111707912_111709151
transcript_52618.nic	chr7	-	3304	7	ISM	ENSMUSG00000030772.7	ENSMUST00000033036.7	3359	8	602	0	602	0	3prime_fragment	FALSE	canonical	3	37	junction_5	9.03234926989282	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCATGGTATGGGTCCATT	NA	False	NA	-1	True	AATAAA	-23	NA	111757662	111715223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_111717638_111718554_111718712_111719594_111719740_111720796_111720890_111748167_111748252_111749817_111749956_111757389
transcript_52620.nic	chr7	-	2170	7	ISM	ENSMUSG00000030772.7	ENSMUST00000033036.7	3359	8	602	1134	602	-1134	3prime_fragment	FALSE	canonical	3	37	junction_5	9.03234926989282	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATGCCTTTCTCCTGAGTT	NA	False	NA	-2	True	NA	NA	NA	111757662	111716357	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_111717638_111718554_111718712_111719594_111719740_111720796_111720890_111748167_111748252_111749817_111749956_111757389
transcript_52623.known	chr7	+	4454	13	FSM	ENSMUSG00000030770.16	ENSMUST00000033030.14	4454	13	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_2	5.24603024517905	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCGCTGTTTCTTCCAA	3329	False	NA	NA	False	AATGAA	-13	NA	112026912	112190899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_112027308_112143383_112143474_112143939_112144011_112146717_112146821_112159135_112159277_112166969_112167086_112172077_112172137_112174561_112174582_112175606_112175669_112176142_112176212_112178862_112178965_112180156_112180230_112187746
transcript_52626.known	chr7	+	2908	20	FSM	ENSMUSG00000055116.9	ENSMUST00000047321.9	2908	20	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_10	14.0300429530047	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTACTGTTCCCAATTGATAA	3747	False	NA	NA	False	AATAAA	-20	NA	112806671	112913333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_112806852_112833830_112833904_112873832_112873961_112878663_112878790_112879856_112880010_112882463_112882503_112882727_112882770_112884205_112884364_112886323_112886404_112890667_112890761_112892384_112892503_112894650_112894801_112898393_112898641_112900757_112900865_112902547_112902699_112903530_112903620_112905224_112905334_112907822_112907917_112912000_112912104_112912665
transcript_52630.known	chr7	-	2581	11	FSM	ENSMUSG00000038187.15	ENSMUST00000047091.14	2581	11	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_8	39.4138300600183	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACACCTTGGCTAGATTC	NA	False	NA	1	True	AATAAA	-34	NA	112968546	112914832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112950987_112951146_112964111_112964177_112968078_112968166_112968405
transcript_52632.nnic	chr7	-	2560	10	NIC	ENSMUSG00000038187.15	novel	2581	11	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	19	junction_8	62.9638344166272	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCTGACCAACTTTATGA	NA	False	NA	-16	True	AATAAA	-17	NA	112968607	112914849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112950987_112951146_112968078_112968166_112968405
transcript_52633.nnic	chr7	-	2467	10	NIC	ENSMUSG00000038187.15	novel	2581	11	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	63	junction_7	47.410734836931	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCTGACCAACTTTATGA	NA	False	NA	-16	True	AATAAA	-17	NA	112968607	112914849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112964111_112964177_112968078_112968166_112968405
transcript_52636.known	chr7	-	2394	9	FSM	ENSMUSG00000038187.15	ENSMUST00000119278.8	2394	9	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_7	50.6814500088543	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTTCTGACCAACTTTATGA	NA	False	NA	-16	True	AATAAA	-17	NA	112968599	112914849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_112915947_112921886_112921998_112924984_112925183_112927545_112927667_112929061_112929165_112931816_112932103_112934528_112934726_112968078_112968166_112968405
transcript_52641.known	chr7	+	4962	13	FSM	ENSMUSG00000030759.17	ENSMUST00000033018.15	4962	13	0	0	0	0	multi-exon	FALSE	canonical	2	280	junction_11	48.5005727343044	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATGTACTCCTTTGCAA	NA	False	NA	14	True	AATAAA	-22	NA	113113040	113170718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_113113145_113125194_113125246_113138479_113138674_113139742_113139919_113146608_113146789_113149172_113149351_113150279_113150325_113150441_113150561_113151141_113151210_113152848_113153021_113160582_113160713_113165591_113165720_113167301
transcript_52648.known	chr7	+	733	6	FSM	ENSMUSG00000030759.17	ENSMUST00000136158.8	733	6	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	148.237107365194	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAGGCATTGGCAGAGTATG	NA	False	NA	NA	False	NA	NA	NA	113113083	113149247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_113113145_113125194_113125246_113138483_113138674_113139742_113139919_113146608_113146789_113149172
transcript_52649.known	chr7	-	3346	22	FSM	ENSMUSG00000030754.10	ENSMUST00000033012.9	3346	22	0	0	0	0	multi-exon	FALSE	canonical	3	435	junction_12	34.3731688854697	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTATCTGTGGGATTTTT	NA	False	NA	-7	True	AATAAA	-16	NA	113853946	113814793	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_113815173_113815697_113815854_113816856_113816947_113818760_113818907_113820877_113820998_113822437_113822583_113825837_113826018_113826181_113826410_113831409_113831531_113832431_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853840
transcript_5265.known	chr10	+	838	7	FSM	ENSMUSG00000020056.17	ENSMUST00000182183.8	838	7	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_4	103.215658803411	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAATATGGTTTGTTGACCAA	NA	False	NA	13	True	AATAAA	-16	NA	88037013	88081868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055114_88055223_88070255_88070321_88081617
transcript_52651.nic	chr7	-	1669	13	ISM	ENSMUSG00000030754.10	ENSMUST00000033012.9	3346	22	-31	17781	-31	-17746	5prime_fragment	FALSE	canonical	3	435	junction_3	29.7838276399943	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATAAAGAAAGAAGCTGG	NA	False	NA	3	True	ATTAAA	-43	NA	113853977	113832574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_113832593_113834173_113834271_113836021_113836168_113836528_113836676_113836761_113836870_113837584_113837705_113839859_113839998_113844658_113844752_113845962_113846078_113848042_113848213_113849280_113849511_113853104_113853255_113853840
transcript_52658.known	chr7	-	960	10	FSM	ENSMUSG00000030751.19	ENSMUST00000135570.8	960	10	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_9	875.758056108824	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGTCCAGATGTAAGTTTT	NA	False	NA	NA	False	TTTAAA	-39	NA	113875261	113864029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875195
transcript_52659.known	chr7	-	1201	10	FSM	ENSMUSG00000030751.19	ENSMUST00000033008.10	1201	10	0	0	0	0	multi-exon	TRUE	canonical	3	2548	junction_6	196.061655709387	4090	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTCAAGTTTTTGTTTT	NA	False	NA	0	True	AATAAA	-17	NA	113875353	113863840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_113864192_113865668_113865780_113866355_113866436_113868955_113869086_113869567_113869639_113870288_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
transcript_5266.known	chr10	+	521	6	FSM	ENSMUSG00000020056.17	ENSMUST00000182619.2	521	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	169.707513092379	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTCTTGAGTGCCGAGAAGT	NA	False	NA	NA	False	NA	NA	NA	88037124	88061003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_88037155_88037673_88037773_88049508_88049575_88051828_88051937_88055114_88055223_88060893
transcript_52672.known	chr7	-	959	5	FSM	ENSMUSG00000030751.19	ENSMUST00000154909.2	959	5	0	0	0	0	multi-exon	FALSE	canonical	3	2548	junction_1	245.338923736125	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	113875289	113869723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_113870378_113873046_113873151_113873260_113873363_113873650_113873696_113875235
transcript_52674.known	chr7	-	956	1	FSM	ENSMUSG00000030751.19	ENSMUST00000210966.2	956	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	113875302	113874346	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_113874300_113875300
transcript_52675.known	chr7	-	1627	5	FSM	ENSMUSG00000030670.17	ENSMUST00000032908.15	1627	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.58602010819715	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGTACTAGAGCAATAACAA	NA	False	NA	NA	False	AGTAAA	-21	NA	114162207	114149400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_114149683_114150987_114151318_114151955_114152589_114153825_114153968_114161967
transcript_52676.nic	chr7	-	1003	5	NIC	ENSMUSG00000030669.14	novel	994	5	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	2	4	junction_4	37.532485928859	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGTCTTTGCTGTTACT	2049	False	NA	0	True	ATTAAA	-27	NA	114235577	114230712	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_114231141_114231650_114231835_114233702_114233844_114234361_114234457_114235422
transcript_52677.known	chr7	-	994	5	FSM	ENSMUSG00000030669.14	ENSMUST00000032906.11	994	5	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	7.39932429347437	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGAGTCTTTGCTGTTACT	2034	False	NA	0	True	ATTAAA	-27	NA	114235592	114230712	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_114231141_114231650_114231835_114233702_114233844_114234361_114234457_114235446
transcript_52678.known	chr7	-	830	4	FSM	ENSMUSG00000030669.14	ENSMUST00000032907.9	830	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	40.2022663816634	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTGAACCATGGTGGTCA	2079	False	NA	NA	False	AATAAA	-16	NA	114235547	114232527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_114233021_114233702_114233844_114234361_114234457_114235446
transcript_52679.known	chr7	-	1019	1	FSM	ENSMUSG00000086583.4	ENSMUST00000071641.5	1019	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4471	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AATAAA	-15	NA	114305470	114304451	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_114304500_114305500
transcript_5268.known	chr10	+	1139	9	FSM	ENSMUSG00000020059.10	ENSMUST00000020252.10	1139	9	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	7.47391296443837	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTTGGTTTCAGTATAT	NA	False	NA	3	True	AATAAA	-15	NA	88295430	88309097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88302300_88302419_88303144_88303245_88305407_88305507_88308537_88308643_88308766
transcript_52682.known	chr7	+	1430	5	FSM	ENSMUSG00000030663.13	ENSMUST00000151254.2	1430	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	766.33690371794	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	False	NA	29	True	AATAAA	-20	NA	115692600	115704445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_115692761_115698674_115698759_115701178_115701240_115702429_115702556_115703446
transcript_52683.known	chr7	+	1479	5	FSM	ENSMUSG00000030663.13	ENSMUST00000032899.12	1479	5	0	0	0	0	multi-exon	FALSE	canonical	3	1664	junction_2	78.2527954772224	1885	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGATTGTGATGCCTTTAT	NA	False	NA	29	True	AATAAA	-20	NA	115692535	115704445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_115692761_115698674_115698759_115701178_115701240_115702445_115702556_115703446
transcript_52685.known	chr7	+	927	5	FSM	ENSMUSG00000030663.13	ENSMUST00000106608.8	927	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	736.785755834082	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTTATACTTTGTTAAA	NA	False	NA	NA	False	NA	NA	NA	115692570	115704066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_115692623_115698674_115698759_115701178_115701240_115702445_115702556_115703446
transcript_52688.known	chr7	+	1153	3	FSM	ENSMUSG00000030663.13	ENSMUST00000106607.2	1153	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	845.5	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTTGATTGTGATGCCTT	NA	False	NA	26	True	AATAAA	-17	NA	115692575	115704442	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_115692623_115702445_115702556_115703446
transcript_5269.known	chr10	-	4863	9	FSM	ENSMUSG00000060002.15	ENSMUST00000117440.8	4863	9	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	46.4837001001426	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGTAAAAGTAGTTTTGT	4021	False	NA	NA	False	ATTAAA	-19	NA	88339935	88305375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_88308847_88311287_88311399_88312209_88312336_88312871_88313031_88316676_88316809_88318092_88318178_88324243_88324386_88325442_88325591_88339446
transcript_52691.known	chr7	-	589	6	FSM	ENSMUSG00000090862.4	ENSMUST00000170953.3	589	6	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4075.24362952695	784	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGTGGTTCTTTCTGC	NA	False	NA	0	True	AATAAA	-20	NA	115933430	115930739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933134_115933184_115933319
transcript_52695.known	chr7	-	1317	5	FSM	ENSMUSG00000090862.4	ENSMUST00000205490.2	1317	5	0	0	0	0	multi-exon	FALSE	canonical	3	8384	junction_1	1180.01069910404	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTGTTTTGTGGTTCTT	NA	False	NA	-5	True	AATAAA	-15	NA	115933368	115930744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_115931715_115932163_115932334_115932930_115933010_115933134_115933184_115933319
transcript_52697.known	chr7	-	1150	5	FSM	ENSMUSG00000090862.4	ENSMUST00000205906.2	1150	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4265.5784118335	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933401	115930746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_115930819_115931613_115931715_115932163_115933010_115933134_115933184_115933319
transcript_527.known	chr1	-	1705	5	FSM	ENSMUSG00000042111.10	ENSMUST00000042493.10	1705	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	5.33853912601566	180	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGAGCTCTCATTTTATTTT	7204	False	NA	1	True	AATAAA	-23	NA	34478753	34475750	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_34476692_34476807_34476940_34477930_34478014_34478123_34478228_34478308
transcript_5270.known	chr10	+	1169	8	FSM	ENSMUSG00000020059.10	ENSMUST00000125612.2	1169	8	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	7.98212288268514	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGGTTTCAGTATATC	NA	False	NA	4	True	AATAAA	-16	NA	88295525	88309098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88302300_88302419_88303144_88303245_88305407_88305507_88308537
transcript_52705.known	chr7	-	2363	3	FSM	ENSMUSG00000090862.4	ENSMUST00000205548.2	2363	3	0	0	0	0	multi-exon	FALSE	canonical	3	9102	junction_2	1081.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933370	115930746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_115933010_115933134_115933184_115933319
transcript_52706.known	chr7	-	653	5	FSM	ENSMUSG00000090862.4	ENSMUST00000206963.2	653	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	4507.63410782197	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTTGGTGTTTTGTGGTTC	NA	False	NA	-7	True	AATAAA	-13	NA	115933365	115930746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_115930819_115931613_115931715_115932163_115932334_115932930_115933010_115933134
transcript_52707.known	chr7	+	750	1	FSM	ENSMUSG00000108461.2	ENSMUST00000206201.2	750	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCTGGATGAAGTTCTGC	NA	False	NA	NA	False	AATAAA	-17	NA	116042809	116043559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_116042800_116043600
transcript_52709.known	chr7	+	1685	14	FSM	ENSMUSG00000030659.15	ENSMUST00000032895.15	1685	14	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	11.132340009308	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACACACGTTTTTATCTT	NA	False	NA	NA	False	AATAAA	-44	NA	116103603	116139819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_116103720_116108689_116108861_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179_116139262_116139676
transcript_52710.nnic	chr7	+	1534	13	NIC	ENSMUSG00000030659.15	novel	1685	14	NA	NA	-20	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	13.8283123417944	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACACACGTTTTTATCTT	NA	False	NA	NA	False	AATAAA	-44	NA	116103583	116139819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_116103720_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179_116139262_116139676
transcript_52712.known	chr7	+	1913	13	FSM	ENSMUSG00000030659.15	ENSMUST00000183175.8	1913	13	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	11.5854314646552	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAAGTCCTGATGTCTG	NA	False	NA	NA	False	AATAAA	-44	NA	116103649	116139678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_116103720_116108689_116108861_116121071_116121216_116123533_116123642_116125195_116125323_116125534_116125639_116126871_116127058_116127234_116127326_116128052_116128112_116128209_116128303_116132306_116132397_116135096_116135268_116139179
transcript_52716.known	chr7	-	640	5	FSM	ENSMUSG00000008683.17	ENSMUST00000106588.8	640	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	4296.69669630054	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117714900	117708286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117714694
transcript_52717.nic	chr7	-	834	5	NIC	ENSMUSG00000008683.17	novel	640	5	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	4290.87441554749	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGGGTCAGTCCTTTTGA	NA	False	NA	-33	True	AATAAA	-19	NA	117715362	117708286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117714962
transcript_52718.known	chr7	-	5179	5	FSM	ENSMUSG00000008683.17	ENSMUST00000131374.8	5179	5	0	0	0	0	multi-exon	FALSE	canonical	3	7367	junction_4	1521.10568337641	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGTCTGAATGGCTTCTG	NA	False	NA	NA	False	AATAAA	-23	NA	117715411	117703594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_117708417_117709155_117709242_117714007_117714088_117714331_117714470_117715358
transcript_5272.known	chr10	+	927	8	FSM	ENSMUSG00000020059.10	ENSMUST00000123244.8	927	8	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	38.7767024521326	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGGTTTCAGTATATC	NA	False	NA	4	True	AATAAA	-16	NA	88295525	88309098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88303144_88303245_88305407_88305507_88308537_88308643_88308766
transcript_52726.known	chr7	-	2171	6	FSM	ENSMUSG00000030654.10	ENSMUST00000032888.10	2171	6	0	0	0	0	multi-exon	FALSE	canonical	3	2173	junction_1	168.469106960297	978	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTTTGTTAACTCTGA	NA	False	NA	-11	True	ATTAAA	-25	NA	117728885	117718113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_117719634_117720383_117720469_117721148_117721267_117725618_117725739_117726356_117726491_117728691
transcript_52730.known	chr7	-	454	3	FSM	ENSMUSG00000030654.10	ENSMUST00000206536.2	454	3	0	0	0	0	multi-exon	FALSE	canonical	3	2507	junction_2	41.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGAAGAATTTCATACCTG	NA	False	NA	NA	False	NA	NA	NA	117728795	117725522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_117725739_117726356_117726491_117728691
transcript_52733.known	chr7	-	914	6	FSM	ENSMUSG00000030652.12	ENSMUST00000032887.4	914	6	0	0	0	0	multi-exon	FALSE	canonical	3	921	junction_3	42.5234053198941	633	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCTTGGTTTTCTTGTGCT	6625	False	NA	-2	True	AATAAA	-16	NA	118132579	118124284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_118124518_118125046_118125116_118126559_118126700_118127526_118127642_118128781_118128961_118132401
transcript_52737.known	chr7	-	4546	16	FSM	ENSMUSG00000042246.6	ENSMUST00000044195.6	4546	16	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_8	12.8571640211466	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGTGTTGGGTGCGTGTTG	4144	False	NA	-2	True	AATAAA	-18	NA	118183959	118135063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_118137441_118138637_118138717_118141108_118141265_118142521_118142653_118144824_118145012_118146539_118146638_118146826_118146945_118149157_118149316_118150358_118150533_118151920_118152069_118155045_118155192_118158078_118158162_118160213_118160382_118163439_118163589_118165407_118165649_118183826
transcript_5274.nic	chr10	+	1051	7	ISM	ENSMUSG00000020059.10	ENSMUST00000123244.8	927	8	0	0	0	0	intron_retention	FALSE	canonical	3	14	junction_4	41.5869236926972	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTGGTTTCAGTATATC	NA	False	NA	4	True	AATAAA	-16	NA	88295525	88309098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_88295575_88298322_88298466_88299224_88299289_88299697_88299733_88303144_88303245_88305407_88305507_88308537
transcript_52742.known	chr7	-	1582	6	FSM	ENSMUSG00000033917.16	ENSMUST00000038791.15	1582	6	0	0	0	0	multi-exon	TRUE	canonical	3	428	junction_5	40.804901666344	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTACTGATCTTCTGGT	NA	False	NA	3	True	AATAAA	-28	NA	118305001	118287767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_118288374_118290805_118291018_118293715_118293809_118294258_118294365_118297777_118297954_118304612
transcript_52744.known	chr7	-	923	5	FSM	ENSMUSG00000033917.16	ENSMUST00000208040.2	923	5	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_4	182.273146678275	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGGATTTTGTCTCCCCG	NA	False	NA	NA	False	NA	NA	NA	118304971	118290824	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_118291018_118293715_118293809_118294258_118294365_118297777_118297950_118304612
transcript_52745.known	chr7	+	5097	31	FSM	ENSMUSG00000030982.20	ENSMUST00000059390.13	5097	31	0	0	0	0	multi-exon	TRUE	canonical	3	302	junction_1	75.0223744403406	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCACTGTGATGCTAATT	9989	False	NA	NA	False	ACTAAA	-15	NA	118339448	118442189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587_118365648_118372243_118372341_118373222_118373271_118374514_118374609_118378910_118378989_118379399_118379523_118389232_118389280_118390590_118390703_118391784_118391902_118393764_118393819_118396188_118396270_118399660_118399724_118400483_118400570_118403326_118403408_118406213_118406278_118409100_118409200_118411027_118411106_118412752_118412868_118425406_118425547_118432924_118433091_118437335_118437455_118439777_118439925_118440418
transcript_52752.nic	chr7	+	934	9	ISM	ENSMUSG00000030982.20	ENSMUST00000129334.8	1552	15	-3	17511	-3	0	5prime_fragment	FALSE	canonical	3	302	junction_1	101.623616226741	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGTGTTTGAAGTCTGGTT	NA	False	NA	NA	False	NA	NA	NA	118339951	118365767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_118339999_118342817_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118365587
transcript_52753.known	chr7	+	1102	9	FSM	ENSMUSG00000030982.20	ENSMUST00000175922.8	1102	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	239.086804320105	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGTGCAAAATTTAATTGAA	NA	False	NA	NA	False	NA	NA	NA	118339969	118361369	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_118339999_118342832_118342918_118345597_118345766_118347348_118347472_118348889_118348915_118352039_118352117_118353028_118353158_118359383_118359469_118360988
transcript_52758.nnic	chr7	-	1756	5	NNC	ENSMUSG00000030980.18	novel	5382	5	NA	NA	-14	1	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	298.679175705304	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGGGTCACCTTCCGTTAA	NA	False	NA	-34	True	AATAAA	-14	NA	118454921	118444722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_118445318_118447719_118447798_118449843_118449913_118451625_118452564_118454845
transcript_52759.known	chr7	-	5382	5	FSM	ENSMUSG00000030980.18	ENSMUST00000116280.9	5382	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	263.543639650059	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAATATAGTCTTTTGAAT	NA	False	NA	-17	True	AATAAA	-16	NA	118455221	118441444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_118445318_118447671_118447798_118449843_118449913_118451625_118452564_118454845
transcript_52762.known	chr7	-	4884	5	FSM	ENSMUSG00000030980.18	ENSMUST00000063607.12	4884	5	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_3	184.092877374438	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATCCATGCCTAAAGCACAAA	NA	False	NA	-32	True	AATAAA	-1	NA	118455224	118441459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_118445318_118447671_118447798_118449843_118449913_118452111_118452564_118454845
transcript_52763.nnic	chr7	-	1496	5	NNC	ENSMUSG00000030980.18	novel	5382	5	NA	NA	-14	-259	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	298.679175705304	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATTTCTTGATCAGTTG	NA	False	NA	-4	True	ATTAAA	-23	NA	118454921	118444982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_118445318_118447719_118447798_118449843_118449913_118451625_118452564_118454845
transcript_52767.nic	chr7	-	947	2	ISM	ENSMUSG00000030980.18	ENSMUST00000126792.9	3253	4	294	8680	-14	293	5prime_fragment	FALSE	canonical	3	591	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAGAAGAAGAAGA	NA	False	NA	-6	True	AAAAAG	-42	NA	118454921	118451692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_118452564_118454845
transcript_52768.nic	chr7	-	734	2	ISM	ENSMUSG00000030980.18	ENSMUST00000126792.9	3253	4	294	8893	-14	80	5prime_fragment	FALSE	canonical	3	591	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAGAAGACCCACCAGG	NA	False	NA	NA	False	NA	NA	NA	118454921	118451905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_118452564_118454845
transcript_52769.nic	chr7	-	299	2	ISM	ENSMUSG00000030980.18	ENSMUST00000126792.9	3253	4	294	9328	-14	-355	5prime_fragment	FALSE	canonical	3	591	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAGAAAGAAGAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	118454921	118452340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_118452564_118454845
transcript_52770.known	chr7	-	686	2	FSM	ENSMUSG00000008734.10	ENSMUST00000207614.2	686	2	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTTGGAGCCAGCCTGTCA	8700	False	NA	NA	False	NA	NA	NA	118576005	118574010	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_118574427_118575735
transcript_52771.known	chr7	-	2689	4	FSM	ENSMUSG00000030942.9	ENSMUST00000033236.9	2689	4	0	0	0	0	multi-exon	FALSE	canonical	3	902	junction_1	48.9239773072014	226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCATTCTTTTTTATT	NA	False	NA	-1	True	AATAAA	-20	NA	119320021	119314315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_119316293_119317244_119317494_119318349_119318525_119319733
transcript_52774.known	chr7	+	1437	2	FSM	ENSMUSG00000100153.3	ENSMUST00000207161.2	1437	2	0	0	0	0	multi-exon	FALSE	canonical	3	469	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAACG	NA	False	NA	NA	False	NA	NA	NA	119339148	119341449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_119340294_119341157
transcript_52787.known	chr7	-	1241	10	FSM	ENSMUSG00000030929.18	ENSMUST00000063902.14	1241	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	31.084115271666	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAATAAAAATAATTCATT	NA	False	NA	NA	False	NA	NA	NA	119393190	119371160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_119371568_119371767_119371843_119385961_119386051_119386626_119386709_119386956_119387058_119389456_119389614_119390323_119390452_119391487_119391572_119391653_119391722_119393140
transcript_5279.known	chr10	-	646	6	FSM	ENSMUSG00000004359.17	ENSMUST00000138734.2	646	6	0	0	0	0	multi-exon	FALSE	canonical	3	380	junction_4	47.5815090134813	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGATGGCCAGAGCCCTGA	NA	False	NA	NA	False	NA	NA	NA	88520877	88511751	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88516340_88516437_88520827
transcript_52790.known	chr7	-	3564	9	FSM	ENSMUSG00000030929.18	ENSMUST00000150844.3	3564	9	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	8.7571399440685	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAGATTTGTGTGTTTGA	NA	False	NA	-4	True	AATAAA	-32	NA	119393281	119383053	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_119385768_119385961_119386051_119386626_119386709_119386956_119387058_119389456_119389614_119390323_119390452_119391487_119391572_119391653_119391722_119393140
transcript_52793.known	chr7	+	752	5	FSM	ENSMUSG00000030922.13	ENSMUST00000054440.11	752	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	26.343879744639	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGAACTATGACATTGTCC	NA	False	NA	NA	False	NA	NA	NA	119495104	119515656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_119495114_119499333_119499532_119509026_119509186_119513395_119513489_119515363
transcript_52794.known	chr7	+	875	4	FSM	ENSMUSG00000030922.13	ENSMUST00000106518.9	875	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	16.3095064303001	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGACAGCTTTAGATTGATC	NA	False	NA	-11	True	NA	NA	NA	119495083	119515956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_119495114_119509026_119509186_119513395_119513489_119515363
transcript_52795.known	chr7	+	936	4	FSM	ENSMUSG00000030922.13	ENSMUST00000208202.2	936	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	24.5356882927706	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTATAGGCTTTTTTG	NA	False	NA	-74	True	NA	NA	NA	119495092	119515893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_119495114_119508893_119509186_119513395_119513489_119515363
transcript_52796.nnic	chr7	+	779	3	NIC	ENSMUSG00000030922.13	novel	875	4	NA	NA	-43	0	combination_of_known_splicesites	FALSE	canonical	3	5	junction_1	31.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATTTGTTGTTTTGTTGAT	NA	False	NA	9	True	TATAAA	-20	NA	119495040	119515976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_119495114_119513395_119513489_119515363
transcript_52797.known	chr7	-	5985	3	FSM	ENSMUSG00000048787.14	ENSMUST00000059851.14	5985	3	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_2	16	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGATATCTCATAGTTAG	NA	False	NA	NA	False	AATAAA	-42	NA	119494968	119452018	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_119457280_119458602_119459139_119494780
transcript_52799.known	chr7	+	1484	5	FSM	ENSMUSG00000030917.14	ENSMUST00000033210.13	1484	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_3	8.8423695919137	70	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTTTTCTTTTTCTT	NA	False	NA	5	True	ATTAAA	-14	NA	119701575	119720209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_119701739_119703852_119704053_119714608_119714778_119715442_119715582_119719396
transcript_528.known	chr1	+	1559	15	FSM	ENSMUSG00000026126.16	ENSMUST00000027302.14	1559	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	5.28426621090905	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGGCTTTGTTCCAGTGA	440	False	NA	NA	False	AATAAA	-23	NA	34498845	34512865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_34498998_34501782_34501892_34502187_34502265_34502349_34502446_34502546_34502586_34507373_34507443_34508920_34508984_34509280_34509424_34510573_34510641_34510721_34510800_34510892_34510983_34511183_34511273_34511843_34512050_34512415_34512491_34512659
transcript_52803.known	chr7	-	1383	8	FSM	ENSMUSG00000030905.6	ENSMUST00000033198.6	1383	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	2.55550625999976	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCCTTTGACAACTTTCTA	NA	False	NA	1	True	AATAAA	-21	NA	119801334	119785602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_119785922_119788948_119789034_119789674_119789797_119794547_119794732_119796872_119796975_119798470_119798534_119800299_119800451_119800977
transcript_52808.known	chr7	+	1896	14	FSM	ENSMUSG00000030884.13	ENSMUST00000033176.7	1896	14	0	0	0	0	multi-exon	FALSE	canonical	3	1087	junction_9	72.1248916810278	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAACATCCTCTCAGCTGGT	NA	False	NA	22	True	AGTAAA	-14	NA	120234398	120258747	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_120234546_120236884_120236969_120237070_120237221_120239456_120239522_120240901_120240959_120242248_120242374_120244373_120244472_120248568_120248627_120250056_120250153_120250407_120250608_120253203_120253285_120255323_120255401_120256739_120256894_120258243
transcript_52814.known	chr7	+	4831	3	FSM	ENSMUSG00000046096.8	ENSMUST00000060175.8	4831	3	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_2	55.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGTTGCCTTCGTCGTTGTG	NA	False	NA	NA	False	NA	NA	NA	120276853	120334077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_120277094_120325342_120325556_120329699
transcript_52816.known	chr7	+	813	2	FSM	ENSMUSG00000046096.8	ENSMUST00000208454.2	813	2	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_1	0	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGTGAAGGCAGTCATTTGC	NA	False	NA	21	True	AATAAA	-27	NA	120276842	120325904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_120277094_120325342
transcript_52817.known	chr7	+	6580	18	FSM	ENSMUSG00000035064.18	ENSMUST00000047875.16	6580	18	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_5	8.32971086202773	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCTTTTGATTTGTCCCG	NA	False	NA	NA	False	NA	NA	NA	120442053	120506673	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_120442324_120457566_120457886_120472531_120472633_120475654_120475716_120479036_120479075_120479527_120479700_120483880_120484031_120484644_120484778_120485032_120485161_120485808_120486011_120487081_120487150_120488412_120488491_120488911_120488975_120490818_120490954_120491087_120491277_120494406_120494532_120498590_120498770_120502504
transcript_52820.known	chr7	+	4194	21	FSM	ENSMUSG00000030880.15	ENSMUST00000033173.15	4194	21	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_16	33.3787357459805	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTCTTCAGAATGTGGTA	NA	False	NA	NA	False	NA	NA	NA	120517006	120546655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_120517134_120522121_120522192_120523444_120523496_120526166_120526245_120527110_120527227_120527650_120527734_120530101_120530210_120530483_120530534_120531356_120531477_120532529_120532616_120532908_120532954_120533055_120533148_120533995_120534117_120536825_120536908_120538218_120538279_120538361_120538520_120538971_120539034_120539524_120540049_120541712_120541791_120543769_120543896_120544698
transcript_52822.known	chr7	+	3001	22	FSM	ENSMUSG00000030880.15	ENSMUST00000106483.4	3001	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	76.9953616413724	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCGTCATAGTGCTGCTG	NA	False	NA	NA	False	AATAAA	-14	NA	120516993	120545472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_120517011_120517033_120517134_120522121_120522192_120523444_120523496_120526166_120526245_120527110_120527227_120527650_120527734_120530101_120530210_120530483_120530534_120531356_120531477_120532529_120532616_120532908_120532954_120533055_120533148_120533995_120534117_120536825_120536908_120538218_120538279_120538361_120538520_120538971_120539034_120539524_120540049_120541712_120541791_120543769_120543896_120544698
transcript_52823.known	chr7	+	1823	5	FSM	ENSMUSG00000030876.8	ENSMUST00000033163.8	1823	5	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_4	46.4435140789325	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTGGCACCATGTTCTTCT	9427	False	NA	7	True	AATAAA	-16	NA	120633667	120676058	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_120634199_120647060_120647252_120651309_120651520_120656437_120656623_120675352
transcript_52826.known	chr7	-	2902	17	FSM	ENSMUSG00000034951.11	ENSMUST00000057576.8	2902	17	0	0	0	0	multi-exon	TRUE	canonical	3	174	junction_8	14.1585607937389	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAAGGGTGTTTCCTTCTTCT	8924	False	NA	0	True	AATAAA	-17	NA	121580934	121522061	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_121522692_121524646_121524791_121528409_121528525_121529752_121529837_121534880_121535022_121536176_121536364_121540392_121540459_121543000_121543118_121548967_121549123_121550385_121550514_121555152_121555352_121562360_121562484_121563423_121563507_121570502_121570672_121576489_121576607_121576838_121576988_121580639
transcript_52827.known	chr7	-	4915	17	FSM	ENSMUSG00000030872.15	ENSMUST00000033160.15	4915	17	0	0	0	0	multi-exon	FALSE	canonical	3	748	junction_16	35.03391214238	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTAGTGTCACTGTTTTG	NA	False	NA	-5	True	AATAAA	-14	NA	121620445	121585944	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_121589025_121589646_121589758_121590716_121590887_121594066_121594225_121596513_121596645_121596983_121597013_121597285_121597376_121598080_121598207_121599341_121599424_121601297_121601436_121601889_121601971_121603109_121603211_121606479_121606604_121607553_121607653_121609905_121609982_121611371_121611457_121620211
transcript_52828.known	chr7	-	2046	9	FSM	ENSMUSG00000030871.12	ENSMUST00000033159.4	2046	9	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	13.5317912709294	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGGTGTTTTGCCTCCAT	NA	False	NA	-1	True	TTTAAA	-18	NA	121666486	121638043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_121638382_121638934_121639071_121643524_121643656_121643735_121643890_121645846_121645956_121647324_121647798_121654781_121654972_121662151_121662308_121666127
transcript_52831.known	chr7	+	4849	7	FSM	ENSMUSG00000030870.13	ENSMUST00000033158.6	4849	7	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_1	33.5642005052341	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTCTCTTTCCTTCC	NA	False	NA	9	True	ATTAAA	-14	NA	121666397	121681417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_121666708_121666886_121667217_121668003_121668213_121670924_121670991_121671132_121671239_121675330_121675414_121677672
transcript_52835.known	chr7	-	3479	5	FSM	ENSMUSG00000030869.12	ENSMUST00000033157.10	3479	5	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_1	2248.42489311963	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATTCCTAACATGCATCA	6358	False	NA	NA	False	AATAAA	-37	NA	121701109	121684625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_121687562_121690808_121690909_121692839_121692928_121695831_121695955_121700877
transcript_52837.known	chr7	-	552	5	FSM	ENSMUSG00000030869.12	ENSMUST00000106471.9	552	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	2300.90270328843	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTTTCTCAATTAGTTT	6508	False	NA	-11	True	AATAAA	-16	NA	121700959	121690053	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_121690213_121690808_121690909_121692839_121692928_121695831_121695955_121700877
transcript_52838.nnic	chr7	-	780	5	NNC	ENSMUSG00000030869.12	novel	552	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	267	junction_1	2197.68361007676	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTTTCTCAATTAGTTT	6358	False	NA	-11	True	AATAAA	-16	NA	121701109	121690053	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_121690291_121690808_121690909_121692839_121692928_121695831_121695955_121700877
transcript_52840.known	chr7	-	1416	5	FSM	ENSMUSG00000030869.12	ENSMUST00000123296.8	1416	5	0	0	0	0	multi-exon	FALSE	canonical	3	4604	junction_1	400.950978923858	704	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGTTTGAGAGCATCTT	6393	False	NA	NA	False	AATAAA	-13	NA	121701074	121689278	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_121690187_121690808_121690909_121692839_121692928_121695831_121695955_121700877
transcript_52842.known	chr7	-	3750	13	FSM	ENSMUSG00000044702.14	ENSMUST00000098068.10	3750	13	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_9	28.0835806121655	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGTTCTATTTT	NA	False	NA	0	True	AATAAA	-20	NA	121732169	121706484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121726271_121727667_121728145_121728240_121728896_121728957_121731942
transcript_52843.known	chr7	-	2559	13	FSM	ENSMUSG00000044702.14	ENSMUST00000106469.8	2559	13	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_9	41.4242950721219	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGTTCTATTTT	NA	False	NA	0	True	AATAAA	-20	NA	121732067	121706484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121723479_121724151_121727360_121727667_121728145_121728240_121728896_121728957_121731942
transcript_52844.nnic	chr7	-	1982	12	NIC	ENSMUSG00000044702.14	novel	2559	13	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_8	40.7258522479556	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGTTCTATTTT	NA	False	NA	0	True	AATAAA	-20	NA	121732161	121706484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121727360_121727667_121728145_121728240_121728896_121728957_121731942
transcript_52845.nnic	chr7	-	1676	11	NIC	ENSMUSG00000044702.14	novel	3750	13	NA	NA	8	0	combination_of_known_splicesites	FALSE	canonical	3	28	junction_8	41.0980534818865	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGTTCTATTTT	NA	False	NA	0	True	AATAAA	-20	NA	121732161	121706484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121728145_121728240_121728896_121728957_121731942
transcript_52846.known	chr7	-	1553	10	FSM	ENSMUSG00000044702.14	ENSMUST00000063587.13	1553	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	51.0709987525234	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGCTTGTTCTATTTT	NA	False	NA	0	True	AATAAA	-20	NA	121732132	121706484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_121706952_121709904_121710054_121711167_121711256_121712472_121712590_121713531_121713694_121716492_121716579_121720276_121720439_121722859_121722932_121728896_121728957_121731942
transcript_52849.known	chr7	-	2145	1	FSM	ENSMUSG00000044702.14	ENSMUST00000205352.2	2145	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAGAAAAG	NA	False	NA	NA	False	NA	NA	NA	121732208	121730063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_121730100_121732200
transcript_5285.nnic	chr10	-	1751	5	NIC	ENSMUSG00000004359.17	novel	1763	6	NA	NA	-83	0	combination_of_known_splicesites	FALSE	canonical	3	169	junction_4	139.833829955415	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGGTCATGATG	NA	False	NA	NA	False	NA	NA	NA	88520960	88510633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88520827
transcript_52850.known	chr7	-	709	3	FSM	ENSMUSG00000044702.14	ENSMUST00000154508.8	709	3	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_2	22.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTTGGCTTGTTCTAT	NA	False	NA	-3	True	AATAAA	-17	NA	121711263	121706487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_121706952_121709904_121710054_121711167
transcript_52851.known	chr7	+	1532	6	FSM	ENSMUSG00000030868.7	ENSMUST00000033156.5	1532	6	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_5	42.3008274150755	120	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTAGGCTCATTCATT	NA	False	NA	14	True	AATAAA	-15	NA	121732263	121748267	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737583_121743007_121743111_121747279
transcript_52857.nnic	chr7	+	674	5	NNC	ENSMUSG00000030868.7	novel	1532	6	NA	NA	0	3505	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	149.087851617763	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATGGCTAGCGTGTATTGT	NA	False	NA	NA	False	AATAAA	-10	NA	121732263	121737862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_121732405_121733391_121733461_121734274_121734394_121737470_121737659_121737705
transcript_52861.known	chr7	+	2199	10	FSM	ENSMUSG00000030867.8	ENSMUST00000033154.8	2199	10	0	0	0	0	multi-exon	FALSE	canonical	3	1108	junction_2	92.3724345606776	313	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTCTCTTTCTCTTTTTG	NA	False	NA	56	True	ATTAAA	-14	NA	121758661	121769096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_121759174_121759758_121759928_121760729_121760875_121761615_121761710_121763242_121763463_121766819_121766976_121767788_121767867_121768051_121768207_121768303_121768487_121768609
transcript_52865.known	chr7	+	662	3	FSM	ENSMUSG00000109814.2	ENSMUST00000211504.2	662	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAACAAAACAAAACAAAAA	1736	False	NA	NA	False	NA	NA	NA	122630637	122665662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_122630774_122660895_122661022_122665262
transcript_52866.nic	chr7	+	274	3	ISM	ENSMUSG00000052707.9	ENSMUST00000206888.2	3625	9	-104	33898	-25	-18869	5prime_fragment	FALSE	canonical	3	106	junction_2	15.5	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAGACGACAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	122723374	122743017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_122723556_122723890_122723939_122742972
transcript_52868.known	chr7	-	3336	20	FSM	ENSMUSG00000030766.16	ENSMUST00000106442.9	3336	20	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	53.0955862029814	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGCTAATTCTTAGAGGCA	NA	False	NA	-1	True	ATTAAA	-25	NA	122969109	122878493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_122879340_122885720_122886237_122891258_122891429_122893694_122893929_122895632_122895790_122896717_122896810_122899711_122899826_122902918_122903000_122905597_122905680_122906190_122906303_122907508_122907637_122913636_122913719_122913866_122913936_122917609_122917722_122920810_122920888_122921101_122921214_122922835_122922910_122926461_122926567_122930448_122930489_122968976
transcript_52871.known	chr7	+	1286	11	FSM	ENSMUSG00000030763.8	ENSMUST00000206574.2	1286	11	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_5	37.2322440903043	329	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTCTGCTACATCTGTACA	6898	False	NA	22	True	AATAAA	-22	NA	122977278	123029572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_122977479_122999660_122999753_123000666_123000789_123002057_123002135_123003645_123003712_123009950_123010050_123017440_123017562_123020760_123020863_123021929_123022022_123027316_123027415_123029355
transcript_52877.known	chr7	+	1451	6	FSM	ENSMUSG00000030762.12	ENSMUST00000098056.6	1451	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	11.1964280018227	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAGCATTTCATCCCAGG	4397	False	NA	-11	True	AATAAA	-3	NA	123061534	123067209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_123061682_123061793_123062042_123063411_123063539_123064331_123064547_123065808_123065944_123066630
transcript_52878.nnic	chr7	-	701	5	NNC	ENSMUSG00000108814.2	novel	494	4	NA	NA	-455	157	at_least_one_novel_splicesite	FALSE	canonical	1	5	junction_1	2.8613807855649	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCCTTTTTATTTAATTT	NA	False	NA	NA	False	ATTAAA	-18	NA	125017741	125016008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_125016315_125016649_125016844_125017022_125017107_125017219_125017292_125017696
transcript_52879.known	chr7	+	2389	8	FSM	ENSMUSG00000030752.9	ENSMUST00000033010.9	2389	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_7	4.74664220738176	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAAAGAAACATTTCTTTA	NA	False	NA	NA	False	AATAAA	-27	NA	125043847	125061441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_125043965_125051399_125051901_125054262_125054430_125055604_125055738_125056135_125056181_125059046_125059197_125060086_125060180_125060258
transcript_5288.nnic	chr10	-	1254	5	NIC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-83	3	combination_of_known_splicesites	FALSE	canonical	3	169	junction_4	139.833829955415	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTGTAGACTGTCTCTT	NA	False	NA	-2	True	AATAAA	-25	NA	88520960	88511130	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_88511933_88513361_88513471_88514385_88514499_88515720_88515818_88520827
transcript_52882.known	chr7	-	1120	8	FSM	ENSMUSG00000030750.14	ENSMUST00000033006.14	1120	8	0	0	0	0	multi-exon	FALSE	canonical	3	553	junction_7	177.832872698624	669	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTGTGTGAGGTTGGGT	NA	False	NA	-11	True	AGTAAA	-33	NA	125090768	125066811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_125067016_125067450_125067572_125068200_125068318_125070284_125070432_125071046_125071125_125071279_125071402_125085509_125085657_125090584
transcript_52883.nnic	chr7	-	1076	8	NNC	ENSMUSG00000030750.14	novel	1120	8	NA	NA	5	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_3	366.156039002444	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGGCTTGTGTGAGGTTGGGT	NA	False	NA	-11	True	AGTAAA	-33	NA	125090763	125066811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_125067016_125067450_125067572_125068200_125068318_125070323_125070432_125071046_125071125_125071279_125071402_125085509_125085657_125090584
transcript_52889.known	chr7	-	6961	37	FSM	ENSMUSG00000032777.10	ENSMUST00000055506.9	6961	37	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_34	23.9112782676933	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGTGTATTGGCCTAATG	NA	False	NA	1	True	ATTAAA	-16	NA	125306952	125240125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_125240906_125241618_125241812_125242497_125242538_125243045_125243545_125244686_125244977_125245645_125245906_125246511_125246800_125247568_125247742_125250234_125250329_125251034_125251098_125253638_125253752_125255015_125255098_125256657_125256801_125258228_125258387_125261430_125261620_125261748_125261828_125262130_125262267_125262579_125262719_125266195_125266374_125266483_125266581_125267165_125267264_125268025_125268172_125268320_125268591_125268754_125268940_125269646_125269751_125271856_125272011_125273228_125273366_125275654_125275858_125276472_125276789_125277997_125278114_125280273_125280436_125292310_125292435_125295632_125295730_125298120_125298265_125298515_125298693_125303002_125303213_125306628
transcript_52890.nic	chr7	-	2504	14	ISM	ENSMUSG00000000131.16	ENSMUST00000170675.8	5028	21	31235	-5	11026	0	3prime_fragment	FALSE	canonical	3	494	junction_11	31.7898052207989	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGTGATGGGGCATCTTTG	NA	False	NA	NA	False	AATAAA	-27	NA	125728808	125700887	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_125701563_125703875_125704107_125704272_125704372_125706242_125706405_125707623_125707796_125707957_125708073_125709085_125709242_125711923_125712114_125712828_125712976_125714979_125715125_125719528_125719622_125723543_125723704_125727398_125727469_125728719
transcript_52893.known	chr7	-	1235	12	FSM	ENSMUSG00000030742.8	ENSMUST00000032997.8	1235	12	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_9	5.32264769756525	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCGTCGTTGTCTTCTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	125968706	125962998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_125963214_125963367_125963473_125963569_125963633_125963730_125963794_125967047_125967143_125967217_125967279_125967357_125967388_125967470_125967536_125967666_125967755_125967973_125968009_125968113_125968142_125968319
transcript_52897.nic	chr7	-	2111	13	NIC	ENSMUSG00000030741.16	novel	2152	13	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_12	122.006830409886	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	-6	True	AATAAA	-14	NA	125976593	125969238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008_125976218_125976289
transcript_52900.known	chr7	-	2219	12	FSM	ENSMUSG00000030741.16	ENSMUST00000032994.15	2219	12	0	0	0	0	multi-exon	TRUE	canonical	3	348	junction_9	48.6508899292612	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGACTGCTTGTCTCTCTGT	NA	False	NA	1	True	AATAAA	-21	NA	125976622	125969231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125973093_125973246_125974238_125974376_125975845_125975912_125976008
transcript_52903.nnic	chr7	-	2036	11	NIC	ENSMUSG00000030741.16	novel	2152	13	NA	NA	-5	0	intron_retention	FALSE	canonical	3	13	junction_8	135.864785724631	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGACTGACTGCTTGTC	NA	False	NA	-6	True	AATAAA	-14	NA	125976598	125969238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_125969586_125969906_125970079_125970349_125970449_125970712_125970779_125971129_125971320_125971583_125971740_125971916_125972063_125972941_125973009_125974238_125974376_125975845_125975912_125976008
transcript_5291.nic	chr10	-	2198	5	NIC	ENSMUSG00000004359.17	novel	646	6	NA	NA	-16	3	intron_retention	FALSE	canonical	3	380	junction_3	53.1859943970215	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATTTGTAGACTGTCTCTT	NA	False	NA	-2	True	AATAAA	-25	NA	88520893	88511130	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_88511933_88513361_88514499_88515720_88515818_88516340_88516437_88520827
transcript_52912.known	chr7	-	3388	8	FSM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_7	21.1920277655614	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTGCTGGTTTCTGTCTTT	NA	False	NA	-6	True	AATAAA	-20	NA	125995909	125982025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_125984312_125986573_125986684_125986783_125986929_125989557_125989745_125989834_125989916_125990442_125990567_125995113_125995187_125995527
transcript_52924.nic	chr7	-	576	3	ISM	ENSMUSG00000030722.8	ENSMUST00000075671.5	3388	8	-23	8443	-23	-6420	5prime_fragment	FALSE	canonical	3	215	junction_2	26	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAAAGAAAATGGAAGA	NA	False	NA	6	True	NA	NA	NA	125995932	125990468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_125990567_125995113_125995187_125995527
transcript_52926.known	chr7	+	2234	13	FSM	ENSMUSG00000030727.13	ENSMUST00000106407.9	2234	13	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_4	15.3541525327841	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCAGTTGCCTTGTGCCTGC	NA	False	NA	12	True	AATAAA	-15	NA	126028237	126045073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126028329_126028747_126028958_126034831_126034990_126037541_126037653_126037733_126038079_126039337_126039434_126039519_126039619_126041008_126041165_126043301_126043480_126043589_126043602_126043694_126043751_126043991_126044109_126044468
transcript_52930.known	chr7	+	1679	10	FSM	ENSMUSG00000073838.11	ENSMUST00000098048.6	1679	10	0	0	0	0	multi-exon	FALSE	canonical	3	611	junction_6	33.4490583749803	700	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCAGCTTGTCTTGTGTCTT	NA	False	NA	0	True	AATAAA	-17	NA	126086532	126089899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088425_126088507_126088613_126088723_126088876_126088963_126089084_126089492
transcript_52931.known	chr7	+	1754	9	FSM	ENSMUSG00000073838.11	ENSMUST00000106392.10	1754	9	0	0	0	0	multi-exon	FALSE	canonical	3	611	junction_6	24.9646625252576	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTGTCTTGTGTCTTCTGT	NA	False	NA	4	True	AATAAA	-21	NA	126086549	126089903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126086663_126086759_126086955_126087431_126087599_126087821_126087927_126088008_126088174_126088291_126088425_126088507_126088613_126088723_126089084_126089492
transcript_52938.nic	chr7	-	3944	22	NIC	ENSMUSG00000032637.16	novel	4023	22	NA	NA	90	0	intron_retention	FALSE	canonical	3	143	junction_21	199.099617268271	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTTAACCTGCCTATGGGT	7332	False	NA	-7	True	NA	NA	NA	126101182	126090886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095801_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126101124
transcript_52941.known	chr7	-	3853	23	FSM	ENSMUSG00000032637.16	ENSMUST00000040202.15	3853	23	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_1	278.170751413855	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCCTATGGGTTTGATTC	9414	False	NA	0	True	NA	NA	NA	126102609	126090879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126091388_126091983_126092174_126092335_126092549_126092724_126092847_126092932_126093063_126093310_126093502_126093591_126093665_126093748_126093896_126094371_126094442_126094531_126094828_126094992_126095064_126095460_126095533_126095608_126095819_126096425_126096537_126096664_126096841_126097276_126097478_126098321_126098414_126099300_126099426_126099894_126100046_126100274_126100347_126100427_126100485_126100593_126100631_126102071
transcript_52946.known	chr7	-	3383	21	FSM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	0	0	0	0	multi-exon	FALSE	canonical	3	1924	junction_14	277.99846672239	353	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACTTGGAGTTTCTAAAGGT	NA	False	NA	NA	False	NA	NA	NA	126165583	126145626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126146253_126146356_126146520_126146606_126146695_126146777_126146844_126146934_126147095_126151146_126151511_126155454_126155680_126155881_126156073_126156344_126156439_126156543_126156670_126156855_126156998_126157806_126157911_126158024_126158185_126161737_126161863_126162175_126162283_126162414_126162470_126162798_126162925_126163587_126163778_126163874_126163941_126165250_126165392_126165519
transcript_52952.nic	chr7	-	492	4	ISM	ENSMUSG00000030738.12	ENSMUST00000032992.7	3383	21	-31	17961	-31	-1412	5prime_fragment	FALSE	canonical	3	1990	junction_3	283.983958858399	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGACTCTGAGCATGCAG	NA	False	NA	NA	False	NA	NA	NA	126165614	126163587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_126163778_126163874_126163941_126165250_126165392_126165519
transcript_52956.nnic	chr7	-	1904	18	NNC	ENSMUSG00000030720.17	novel	3203	18	NA	NA	-136	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_17	50.8134521599864	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	126184094	126171257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126179964_126180037_126180817_126180915_126181935_126182015_126182171_126182269_126182474_126182620_126183345_126183453_126183991
transcript_52966.known	chr7	+	3685	4	FSM	ENSMUSG00000042759.13	ENSMUST00000039522.8	3685	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1.69967317119759	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGGTAAGGACTGGAGG	NA	False	NA	NA	False	NA	NA	NA	126184113	126188284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126184241_126184547_126186984_126187068_126187335_126187428
transcript_52967.known	chr7	-	1571	14	FSM	ENSMUSG00000030720.17	ENSMUST00000098036.9	1571	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_11	40.0146422904558	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTTTTGTGCAGTCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	126182362	126171257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126171559_126171642_126171784_126174165_126174260_126174374_126174431_126174515_126174585_126174661_126174709_126176980_126177094_126178344_126178489_126178572_126178646_126179315_126179402_126179504_126179585_126180817_126180915_126181935_126182015_126182171
transcript_52970.known	chr7	-	829	3	FSM	ENSMUSG00000030717.10	ENSMUST00000032961.4	829	3	0	0	0	0	multi-exon	FALSE	canonical	3	3716	junction_2	16	984	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTTGGCGTGTGTTGTGT	NA	False	NA	-8	True	AATAAA	-16	NA	126224848	126222420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126222752_126224061_126224206_126224494
transcript_52971.known	chr7	-	570	3	FSM	ENSMUSG00000030717.10	ENSMUST00000191192.2	570	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	1863	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GCAGCAACAATAAATCGTAC	NA	False	NA	-37	True	AATAAA	-18	NA	126224516	126222449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126222752_126224061_126224308_126224494
transcript_52972.known	chr7	-	587	3	FSM	ENSMUSG00000030717.10	ENSMUST00000187609.2	587	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	1865.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCTTTCCCACCTAAGT	NA	False	NA	NA	False	NA	NA	NA	126224647	126222613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126222752_126224061_126224358_126224494
transcript_52974.nic	chr7	+	1281	11	NIC	ENSMUSG00000030714.15	novel	1312	10	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_2	179.607043291737	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTCTCCTGGGCCTCAC	82	False	NA	33	True	AATAAA	-16	NA	126248451	126271951	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_126248650_126260223_126260321_126261737_126261824_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
transcript_52977.known	chr7	+	1312	10	FSM	ENSMUSG00000030714.15	ENSMUST00000032956.10	1312	10	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_3	31.8433666561813	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCATGTTTGTACTTTAGGT	111	False	NA	NA	False	AATACA	-18	NA	126248480	126272097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270840_126270905_126271053_126271209_126271246_126271327_126271491_126271741
transcript_52978.known	chr7	+	777	9	FSM	ENSMUSG00000030714.15	ENSMUST00000205507.2	777	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	157.189724139334	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAGGAGCAGCTGGTGCTGG	204	False	NA	NA	False	NA	NA	NA	126248573	126271411	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126248650_126260223_126260321_126263100_126263177_126264087_126264161_126269801_126269867_126270709_126270833_126270905_126271053_126271209_126271246_126271327
transcript_5298.known	chr10	+	2080	6	FSM	ENSMUSG00000060904.15	ENSMUST00000116234.9	2080	6	0	0	0	0	multi-exon	FALSE	canonical	3	1125	junction_1	68.5466264669531	988	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGAGATGTCTTTAGTGTCTT	NA	False	NA	14	True	AATAAA	-23	NA	88566929	88579956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_88567427_88569404_88569543_88571759_88571842_88572952_88573065_88577768_88577948_88578884
transcript_52983.known	chr7	+	416	3	FSM	ENSMUSG00000030714.15	ENSMUST00000123382.2	416	3	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_2	10	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATGTCTCCTGGGCCTCAC	NA	False	NA	33	True	AATAAA	-16	NA	126271202	126271951	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126271246_126271327_126271491_126271741
transcript_52984.known	chr7	-	1660	11	FSM	ENSMUSG00000030707.16	ENSMUST00000032949.14	1660	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	5.95315042645489	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTCAGACTCCGGTGAACT	NA	False	NA	NA	False	AATAAA	-21	NA	126303988	126298944	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126299158_126299428_126299645_126299755_126299814_126299911_126300058_126300163_126300269_126300461_126300582_126300689_126300875_126300961_126301092_126301177_126301301_126302147_126302347_126303823
transcript_52985.known	chr7	-	3152	6	FSM	ENSMUSG00000059772.13	ENSMUST00000144897.2	3152	6	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_4	7.98498591107085	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTGGCTTCAGGCCACAA	4987	False	NA	NA	False	AATAAA	-24	NA	126294956	126288639	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126290828_126290910_126290996_126291099_126291228_126291492_126291832_126291924_126291977_126294596
transcript_52987.known	chr7	-	1390	5	FSM	ENSMUSG00000059772.13	ENSMUST00000142337.7	1390	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	31.8276609256791	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTGGCTGAGACAGTTT	5047	False	NA	NA	False	NA	NA	NA	126294896	126290289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126290828_126290910_126290996_126291099_126291228_126291492_126291832_126294596
transcript_52988.known	chr7	-	1567	5	FSM	ENSMUSG00000059772.13	ENSMUST00000155012.3	1567	5	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_3	8.78919791562347	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTCTGGCTGAGACAGTTT	5026	False	NA	NA	False	NA	NA	NA	126294917	126290289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126290828_126290910_126291228_126291492_126291832_126291924_126291977_126294596
transcript_5299.known	chr10	-	6748	11	FSM	ENSMUSG00000074802.12	ENSMUST00000099374.9	6748	11	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_8	13.3450365304858	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTTGCCTAACTTTATAA	NA	False	NA	49	True	AATAAA	-18	NA	89279829	89244684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_89250355_89252881_89252990_89257318_89257458_89258076_89258141_89262269_89262412_89264891_89265008_89266745_89266915_89269626_89269675_89270151_89270224_89272364_89272472_89279716
transcript_52990.known	chr7	+	1266	3	FSM	ENSMUSG00000047721.9	ENSMUST00000130498.2	1266	3	0	0	0	0	multi-exon	FALSE	canonical	3	2284	junction_2	148	1586	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACACAATGCACGCTGATG	611	False	NA	NA	False	NA	NA	NA	126294607	126296230	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126295272_126295354_126295453_126295726
transcript_52991.known	chr7	+	642	2	FSM	ENSMUSG00000047721.9	ENSMUST00000106369.2	642	2	0	0	0	0	multi-exon	FALSE	canonical	3	2580	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGTCTCAGTGTGCTGTT	1148	False	NA	22	True	ATTAAA	-17	NA	126295144	126295869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126295272_126295354
transcript_52993.known	chr7	+	1800	9	FSM	ENSMUSG00000063065.14	ENSMUST00000057669.16	1800	9	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_5	18.155147341732	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTCTGTCTGTGTAT	5216	False	NA	31	True	TATAAA	-24	NA	126358772	126364991	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126358991_126359902_126360086_126362206_126362397_126362569_126362687_126362912_126363028_126363405_126363538_126363705_126363816_126363894_126364050_126364411
transcript_52996.known	chr7	+	436	2	FSM	ENSMUSG00000063065.14	ENSMUST00000206875.2	436	2	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCCCAGCAAAGTAACTTT	5275	False	NA	NA	False	NA	NA	NA	126358831	126360179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126358991_126359902
transcript_52997.known	chr7	+	1148	10	FSM	ENSMUSG00000030703.9	ENSMUST00000032944.9	1148	10	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_3	2.43938871112224	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTTCATGGAACAAGGG	NA	False	NA	12	True	AATAAA	-18	NA	126365505	126374817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126365782_126366073_126366117_126366346_126366483_126366562_126366609_126366738_126366858_126366934_126367025_126367741_126367876_126370159_126370220_126370333_126370386_126374625
transcript_52998.known	chr7	+	973	5	FSM	ENSMUSG00000042675.16	ENSMUST00000038614.12	973	5	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_2	12.73528562695	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCTGGCTCACATGGAAT	8221	False	NA	17	True	AATAAA	-18	NA	126376126	126379686	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126376276_126376942_126377126_126377225_126377270_126377477_126377587_126379198
transcript_53.known	ERCC-00157	+	1003	1	FSM	ERCC-00157A	DQ839618	1003	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00157_+_0_1000
transcript_5300.known	chr10	-	6305	11	FSM	ENSMUSG00000074802.12	ENSMUST00000105298.3	6305	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	9.03382532485547	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTTTGCTTTTTTAAT	NA	False	NA	-17	True	ATTAAA	-17	NA	89279829	89245124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_89250355_89252881_89252990_89257318_89257458_89258076_89258141_89262269_89262412_89264891_89265008_89266745_89266915_89269626_89269675_89270154_89270224_89272364_89272472_89279716
transcript_53009.known	chr7	-	1359	9	FSM	ENSMUSG00000030697.8	ENSMUST00000032936.8	1359	9	0	0	0	0	multi-exon	FALSE	canonical	3	1828	junction_8	282.244574792856	1524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTAGGTTCTGTCAGGTTTG	5070	False	NA	NA	False	AATAAA	-15	NA	126391668	126385037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232_126391396_126391594
transcript_5301.known	chr10	-	3566	18	FSM	ENSMUSG00000069539.12	ENSMUST00000092227.12	3566	18	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	5.88058797050879	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGTATGCTTAGTAAAAGCA	NA	False	NA	NA	False	NA	NA	NA	89522130	89475813	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_89476979_89477852_89477973_89481323_89481417_89481538_89481606_89482620_89482722_89485826_89485946_89486689_89486823_89488804_89488919_89489965_89490089_89492569_89492747_89493671_89493798_89495100_89495218_89495996_89496219_89498177_89498328_89502578_89502724_89505506_89505665_89514139_89514345_89521899
transcript_53012.known	chr7	-	881	8	FSM	ENSMUSG00000030697.8	ENSMUST00000205935.2	881	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	908.071807823184	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCAATGTGGCAGCCATCT	5073	False	NA	NA	False	NA	NA	NA	126391665	126385460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126391232_126391396_126391594
transcript_53017.known	chr7	-	1400	8	FSM	ENSMUSG00000030697.8	ENSMUST00000206570.2	1400	8	0	0	0	0	multi-exon	FALSE	canonical	3	2424	junction_1	142.291307979548	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTAGGTTCTGTCAGGTT	5226	False	NA	NA	False	AATAAA	-13	NA	126391512	126385039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126385464_126385543_126385734_126386391_126386519_126386608_126386783_126387288_126387391_126387555_126387607_126388195_126388248_126391232
transcript_5302.known	chr10	-	4817	18	FSM	ENSMUSG00000069539.12	ENSMUST00000174252.8	4817	18	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	5.88058797050879	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCTTTGGAACAGTTCAG	NA	False	NA	0	True	AATAAA	-17	NA	89522147	89474582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_89476979_89477852_89477973_89481323_89481420_89481538_89481606_89482620_89482722_89485826_89485946_89486689_89486823_89488804_89488919_89489965_89490089_89492569_89492747_89493671_89493798_89495100_89495218_89495996_89496219_89498177_89498328_89502578_89502724_89505506_89505665_89514139_89514345_89521899
transcript_53024.known	chr7	-	1549	10	FSM	ENSMUSG00000030695.17	ENSMUST00000087566.11	1549	10	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_9	8041.23258932084	408	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTCTGTTGTTCATGTCTT	NA	False	NA	-5	True	AATAAA	-16	NA	126398313	126394407	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126397145_126397299_126398216
transcript_53032.known	chr7	-	1511	9	FSM	ENSMUSG00000030695.17	ENSMUST00000032934.12	1511	9	0	0	0	0	multi-exon	FALSE	canonical	3	19253	junction_4	564.678448322583	6562	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGTTGTTCATGTCTTGT	NA	False	NA	-3	True	AATAAA	-18	NA	126398426	126394405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126398216
transcript_53033.known	chr7	-	1460	9	FSM	ENSMUSG00000030695.17	ENSMUST00000106348.8	1460	9	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_8	6626.46755325754	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTGTTCATGTCTTG	NA	False	NA	-4	True	AATAAA	-17	NA	126399619	126394406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126394687_126394784_126394985_126395121_126395297_126395388_126395473_126395766_126395928_126396025_126396081_126396508_126396721_126396815_126396949_126399459
transcript_53046.nic	chr7	-	1407	8	NIC	ENSMUSG00000030689.16	novel	1741	7	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	76	junction_7	292.908775936141	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTTGTCCTTTCCTCTA	9918	False	NA	-4	True	ATTAAA	-15	NA	126461548	126451604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876_126461190_126461445
transcript_53047.known	chr7	+	2766	7	FSM	ENSMUSG00000042606.10	ENSMUST00000037248.10	2766	7	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_2	39.0498257216199	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACACTCTCAGGCTCAGT	1476	False	NA	8	True	NA	NA	NA	126461143	126464549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126461689_126461771_126461893_126461989_126462099_126462340_126463423_126463491_126463658_126463734_126463834_126463905
transcript_5305.nic	chr10	-	1744	11	NIC	ENSMUSG00000019948.5	novel	1705	11	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_8	90.3172740952693	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATCTGTTTAATGTTTA	NA	False	NA	-18	True	AATAAA	-21	NA	89568183	89547832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_89548423_89550731_89550871_89552934_89553107_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561766_89562498_89562623_89564002_89564085_89564761_89564880_89568035
transcript_53058.known	chr7	-	1973	7	FSM	ENSMUSG00000030689.16	ENSMUST00000106343.3	1973	7	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_1	102.030496530313	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACACATGTTTTGTGCTTGGA	9194	False	NA	-4	True	ATTAAA	-26	NA	126461010	126450756	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126452164_126456397_126456515_126456847_126456960_126457045_126457125_126460411_126460465_126460647_126460719_126460876
transcript_53059.known	chr7	-	915	6	FSM	ENSMUSG00000060538.15	ENSMUST00000121532.8	915	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_5	16.451139778143	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGTGTAAGGTACTTAC	6242	False	NA	-2	True	AATAAA	-14	NA	126497425	126485391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126496197_126496397_126497395
transcript_5306.known	chr10	-	1705	11	FSM	ENSMUSG00000019948.5	ENSMUST00000020109.5	1705	11	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_5	22.702422778197	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATCTGTTTAATGTTTA	NA	False	NA	-18	True	AATAAA	-21	NA	89568157	89547832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_89548423_89550731_89550871_89552934_89553107_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561766_89562498_89562623_89564015_89564085_89564761_89564880_89568035
transcript_53060.known	chr7	-	941	6	FSM	ENSMUSG00000060538.15	ENSMUST00000032926.12	941	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	14.8781719307178	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTGTGTAAGGTACTTAC	6219	False	NA	-2	True	AATAAA	-14	NA	126497448	126485391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126485488_126488062_126488233_126490774_126491005_126495920_126496111_126496197_126496400_126497395
transcript_53062.known	chr7	+	1676	6	FSM	ENSMUSG00000030685.6	ENSMUST00000032924.6	1676	6	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_2	8.49470423263812	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGACTCTCGGGTGAG	NA	False	NA	25	True	AATAAA	-17	NA	126528050	126544803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126528471_126529804_126529975_126540504_126540595_126540682_126540736_126541318_126541515_126544056
transcript_53064.known	chr7	+	1838	6	FSM	ENSMUSG00000030682.5	ENSMUST00000206794.2	1838	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	162.28739938763	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGGTTTTCTCAGAGCATG	NA	False	NA	22	True	NA	NA	NA	126575607	126579671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126575979_126576089_126576225_126577433_126577588_126578037_126578169_126578493_126578576_126578706
transcript_53065.known	chr7	+	1833	6	FSM	ENSMUSG00000030682.5	ENSMUST00000206170.2	1833	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	162.878359520226	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTTCTCAGAGCATGGT	NA	False	NA	24	True	NA	NA	NA	126575629	126579673	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126575979_126576089_126576225_126577433_126577588_126578086_126578169_126578429_126578576_126578706
transcript_53066.known	chr7	+	806	6	FSM	ENSMUSG00000030682.5	ENSMUST00000206346.2	806	6	0	0	0	0	multi-exon	FALSE	canonical	1	15	junction_4	157.366578408505	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGCAGCAGACCGCGCCAAG	NA	False	NA	NA	False	AAGAAA	-15	NA	126575759	126578823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126575979_126576089_126576225_126577433_126577588_126578086_126578169_126578476_126578576_126578706
transcript_53067.known	chr7	+	1974	6	FSM	ENSMUSG00000030682.5	ENSMUST00000032920.5	1974	6	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_2	28.9344085821708	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATGTGTTTACTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	126575085	126579334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126575979_126576089_126576225_126577433_126577588_126578086_126578169_126578493_126578576_126578706
transcript_53074.known	chr7	-	2837	15	FSM	ENSMUSG00000030681.19	ENSMUST00000165096.9	2837	15	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_9	19.4401226165613	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTTTTTCCCTCTTAT	NA	False	NA	0	True	AATAAA	-21	NA	126613793	126586031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126586287_126586648_126586838_126587489_126587617_126587997_126588115_126588717_126589105_126591446_126591645_126591725_126591971_126592691_126592974_126594907_126595145_126595409_126595505_126597397_126597530_126597644_126597769_126600651_126600848_126600980_126601131_126613690
transcript_53077.known	chr7	-	4373	3	FSM	ENSMUSG00000107068.2	ENSMUST00000032918.4	4373	3	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_2	10	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGGCGTGGTGGCGCACG	6455	False	NA	-34	True	AATAAA	-14	NA	126619499	126614236	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126614642_126615371_126615455_126615614
transcript_53079.known	chr7	-	2650	6	FSM	ENSMUSG00000030678.8	ENSMUST00000205568.2	2650	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	289.408085581588	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGAGTTCCTAAGTTAT	256	False	NA	-27	True	AATAAA	-18	NA	126625698	126621301	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126622341_126622653_126622879_126623615_126623788_126624047_126624112_126624475_126625327_126625399
transcript_53080.nnic	chr7	-	1577	5	NIC	ENSMUSG00000030678.8	novel	2650	6	NA	NA	148	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	324.634409759656	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCTGAGTTCCTAAGTTAT	478	False	NA	-27	True	AATAAA	-18	NA	126625476	126621301	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_126622341_126622653_126622879_126623615_126623788_126624047_126624112_126625399
transcript_53085.known	chr7	-	2347	5	FSM	ENSMUSG00000030678.8	ENSMUST00000032916.6	2347	5	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_1	136.928813622261	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTGAGTTCCTAAG	330	False	NA	-31	True	AATAAA	-14	NA	126625624	126621305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126622341_126623615_126623788_126624047_126624112_126624475_126625327_126625399
transcript_53086.nnic	chr7	-	1350	4	NIC	ENSMUSG00000030678.8	novel	2347	5	NA	NA	146	0	combination_of_known_splicesites	FALSE	canonical	3	53	junction_3	303.870952141786	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTGAGTTCCTAAG	476	False	NA	-31	True	AATAAA	-14	NA	126625478	126621305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_126622341_126623615_126623788_126624047_126624112_126625399
transcript_53087.known	chr7	-	548	3	FSM	ENSMUSG00000030678.8	ENSMUST00000206953.2	548	3	0	0	0	0	multi-exon	FALSE	canonical	3	463	junction_1	166.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAGCTCTCAGCCACTTCC	1650	False	NA	NA	False	NA	NA	NA	126624304	126622221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126622341_126623615_126623788_126624047
transcript_53090.known	chr7	-	2115	14	FSM	ENSMUSG00000030677.9	ENSMUST00000032915.8	2115	14	0	0	0	0	multi-exon	FALSE	canonical	3	689	junction_8	49.8885147636753	343	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTTGAGCCTGGTTTTTGA	7925	False	NA	-6	True	AATACA	-13	NA	126641643	126626902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632208_126632333_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
transcript_53092.nic	chr7	-	2252	13	NIC	ENSMUSG00000030677.9	novel	2115	14	NA	NA	-12	0	intron_retention	FALSE	canonical	3	712	junction_7	45.9422191453569	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGGTTGAGCCTGGTTTTTG	7913	False	NA	-7	True	AATACA	-12	NA	126641655	126626903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_126627013_126627102_126627163_126627241_126627455_126628086_126628149_126628506_126628673_126630100_126630270_126631800_126631937_126632053_126632565_126632640_126632851_126633049_126633205_126633295_126633424_126634919_126635113_126641515
transcript_53098.known	chr7	+	1932	2	FSM	ENSMUSG00000045165.7	ENSMUST00000056288.7	1932	2	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	0	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTTTGTATGACCTCTG	NA	False	NA	6	True	NA	NA	NA	126690530	126693158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126690645_126691340
transcript_53099.known	chr7	-	2050	4	FSM	ENSMUSG00000030674.6	ENSMUST00000032912.6	2050	4	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	9.46337971105226	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCCTGCATGGCACCTC	NA	False	NA	NA	False	NA	NA	NA	126721398	126706285	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126707414_126707505_126707638_126707880_126708417_126721144
transcript_5310.nic	chr10	-	1611	10	NIC	ENSMUSG00000019948.5	novel	1705	11	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_9	88.0716599363871	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATCTGTTTAATGTTTA	NA	False	NA	-18	True	AATAAA	-21	NA	89568181	89547832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_89548423_89550731_89550871_89552934_89553107_89560861_89560941_89561032_89561132_89561463_89561521_89561629_89561766_89562498_89562623_89564015_89564085_89568035
transcript_53102.known	chr7	-	1309	7	FSM	ENSMUSG00000042502.11	ENSMUST00000035771.5	1309	7	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_6	224.819680830858	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTCCTTTTGGCTTCAC	5583	False	NA	-4	True	AATAAA	-40	NA	126795047	126792829	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794640_126794958
transcript_53103.known	chr7	-	2906	7	FSM	ENSMUSG00000042502.11	ENSMUST00000206026.2	2906	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	225.562999329825	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTGAGTCTGCGCCCAG	5520	False	NA	28	True	NA	NA	NA	126795110	126791167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794640_126795086
transcript_53104.known	chr7	-	2912	7	FSM	ENSMUSG00000042502.11	ENSMUST00000205316.2	2912	7	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_6	218.502034061216	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTGTGGTAATTTAATAAA	5471	False	NA	-1	True	NA	NA	NA	126795159	126791196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126793103_126793186_126793294_126793374_126793814_126793915_126794074_126794194_126794331_126794532_126794640_126795100
transcript_53112.known	chr7	-	3614	9	FSM	ENSMUSG00000042492.13	ENSMUST00000120705.3	3614	9	0	0	0	0	multi-exon	FALSE	canonical	3	338	junction_3	35.2311563108564	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATAGTGGTCCAGCTCCTTC	1542	False	NA	NA	False	AGTAAA	-27	NA	126807640	126796630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126798385_126798469_126798625_126798904_126799095_126799266_126799333_126799456_126799572_126802343_126802451_126802545_126802654_126802912_126803013_126806621
transcript_53118.known	chr7	+	653	7	FSM	ENSMUSG00000030672.13	ENSMUST00000206772.2	653	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	719.114598346853	356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	251	False	NA	32	True	AATAAA	-24	NA	126808070	126813460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126808124_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
transcript_53119.known	chr7	+	766	7	FSM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	683.213892000318	426	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCAGTGTGTTCATGCGCA	2960	False	NA	42	True	AATAAA	-34	NA	126810779	126813470	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126810936_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
transcript_53122.nic	chr7	+	819	7	NIC	ENSMUSG00000030672.13	novel	268	4	NA	NA	-190	0	combination_of_known_junctions	FALSE	canonical	3	184	junction_1	671.232365793612	439	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	3841	False	NA	32	True	AATAAA	-24	NA	126811660	126813460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_126811880_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
transcript_53123.nnic	chr7	+	830	7	NNC	ENSMUSG00000030672.13	novel	268	4	NA	NA	-187	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	712.609621196783	371	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	3844	False	NA	32	True	AATAAA	-24	NA	126811663	126813460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_126811894_126812032_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
transcript_53125.nic	chr7	+	830	6	ISM	ENSMUSG00000030672.13	ENSMUST00000032910.13	766	7	1023	10	-48	0	3prime_fragment	FALSE	canonical	3	600	junction_1	477.333007448678	417	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCAATTTCAGTGTG	3983	False	NA	32	True	AATAAA	-24	NA	126811802	126813460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_126812126_126812336_126812413_126812589_126812695_126812781_126812861_126813106_126813156_126813262
transcript_53126.known	chr7	+	285	2	FSM	ENSMUSG00000030672.13	ENSMUST00000139613.2	285	2	0	0	0	0	multi-exon	FALSE	canonical	3	1768	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGGTGGCAATTTCAGTGT	391	False	NA	31	True	AATAAA	-23	NA	126813067	126813459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126813156_126813262
transcript_53127.nic	chr7	-	1536	11	NIC	ENSMUSG00000000486.14	novel	1486	11	NA	NA	20	0	combination_of_known_junctions	TRUE	canonical	3	14	junction_10	96.582658898997	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGCTGCCGGAGTCTTC	NA	False	NA	-7	True	AATAAA	-18	NA	126817623	126813618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_126814017_126814120_126814212_126814452_126814619_126814830_126814928_126815039_126815142_126815861_126815980_126816072_126816208_126816790_126816915_126817142_126817230_126817312_126817404_126817496
transcript_53132.known	chr7	+	3342	2	FSM	ENSMUSG00000045598.11	ENSMUST00000106312.4	3342	2	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACATTGTCATAGACAACT	8108	False	NA	0	True	AATAAA	-1	NA	126832232	126837351	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126832659_126834435
transcript_53133.known	chr7	+	3043	2	FSM	ENSMUSG00000045598.11	ENSMUST00000056232.7	3043	2	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGTGTGGTTATGTGTA	8302	False	NA	28	True	AATAAA	-18	NA	126832426	126837215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126832690_126834435
transcript_53134.known	chr7	-	713	1	FSM	ENSMUSG00000000486.14	ENSMUST00000205570.2	713	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCGTCTGTCCCTTGAGTG	NA	False	NA	NA	False	AATAAA	-30	NA	126832302	126831589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126831600_126832300
transcript_53135.known	chr7	+	827	1	FSM	ENSMUSG00000045598.11	ENSMUST00000205367.2	827	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAGAAAAAAAAAAA	8341	False	NA	NA	False	NA	NA	NA	126832465	126833292	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_126832500_126833300
transcript_53136.known	chr7	-	1486	11	FSM	ENSMUSG00000000486.14	ENSMUST00000106314.8	1486	11	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_10	48.9043965303734	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTTCCCGCCTTCCCCCA	NA	False	NA	-22	True	AATAAA	-3	NA	126817670	126813633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126814017_126814120_126814212_126814452_126814619_126814830_126814928_126815039_126815142_126815861_126815980_126816072_126816208_126816790_126816915_126817142_126817230_126817312_126817404_126817578
transcript_53137.known	chr7	-	575	2	FSM	ENSMUSG00000000486.14	ENSMUST00000131208.2	575	2	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCAGCTGCCGGAGTCTTC	NA	False	NA	-7	True	AATAAA	-18	NA	126814297	126813618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126814017_126814120
transcript_53138.known	chr7	-	676	3	FSM	ENSMUSG00000042462.5	ENSMUST00000035276.5	676	3	0	0	0	0	multi-exon	FALSE	canonical	3	3852	junction_1	65	1624	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTCGATTTTTCTTGAGT	2490	False	NA	-1	True	AATAAA	-18	NA	126859881	126856130	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126856509_126858529_126858641_126859694
transcript_53139.known	chr7	-	2177	1	FSM	ENSMUSG00000049091.8	ENSMUST00000082428.6	2177	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	144	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGGCTAATGTTTGGTT	2841	False	NA	-8	True	AATAAA	-19	NA	126873227	126871050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126871000_126873200
transcript_53140.known	chr7	-	2356	2	FSM	ENSMUSG00000047371.8	ENSMUST00000060783.7	2356	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATTCGTCCTTAAGATGT	5321	False	NA	-1	True	AATAAA	-16	NA	126944595	126941966	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126944048_126944320
transcript_53141.known	chr7	-	2513	2	FSM	ENSMUSG00000047371.8	ENSMUST00000205266.2	2513	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGATTCGTCCTTAAGATGT	5155	False	NA	-1	True	AATAAA	-16	NA	126944761	126941966	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126944039_126944320
transcript_53142.known	chr7	-	2684	3	FSM	ENSMUSG00000054381.6	ENSMUST00000067425.6	2684	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	4	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAATGATTTCTGCTCCTC	915	False	NA	NA	False	NA	NA	NA	126975222	126971708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_126973871_126974560_126974675_126974814
transcript_53145.known	chr7	-	2508	3	FSM	ENSMUSG00000045757.7	ENSMUST00000059199.7	2508	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATGATTTCTGCTCCTC	8601	False	NA	NA	False	AATAAA	-19	NA	127005994	127002839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127004832_127005337_127005452_127005592
transcript_53148.known	chr7	-	1302	4	FSM	ENSMUSG00000045251.14	ENSMUST00000148483.8	1302	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	18.7794213613377	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	-1	True	NA	-4	True	ATTAAA	-17	NA	127021211	127018138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127018814_127019181_127019278_127020576_127020691_127020794
transcript_53149.nnic	chr7	-	1284	4	NNC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	22.553639765383	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6905	False	NA	-4	True	ATTAAA	-17	NA	127021219	127018138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_127018814_127019181_127019278_127020576_127020691_127020820
transcript_53150.nic	chr7	-	1136	4	NIC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	9	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_2	9.62635271879577	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6893	False	NA	-4	True	ATTAAA	-17	NA	127021231	127018138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_127018814_127019181_127019278_127020576_127020691_127020980
transcript_53151.nnic	chr7	-	1009	3	NIC	ENSMUSG00000045251.14	novel	1302	4	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	25.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6906	False	NA	-4	True	ATTAAA	-17	NA	127021218	127018138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_127018814_127019181_127019278_127020980
transcript_53153.known	chr7	-	1015	3	FSM	ENSMUSG00000045251.14	ENSMUST00000106300.2	1015	3	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	2.5	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	4	True	NA	-4	True	ATTAAA	-17	NA	127021206	127018138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127018814_127020576_127020691_127020980
transcript_53154.known	chr7	-	338	2	FSM	ENSMUSG00000045251.14	ENSMUST00000126756.2	338	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTCTGGTGAGCGACCCTT	7102	False	NA	NA	False	NA	NA	NA	127021022	127018517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127018814_127020980
transcript_53155.known	chr7	-	1298	2	FSM	ENSMUSG00000045251.14	ENSMUST00000136123.8	1298	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGTGTTTTGTGTTAAGA	6925	False	NA	-4	True	ATTAAA	-17	NA	127021199	127018138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127018814_127020576
transcript_53156.known	chr7	+	2402	11	FSM	ENSMUSG00000030822.16	ENSMUST00000033095.10	2402	11	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_10	17.7132718603876	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGACTCCTTTGTGC	NA	False	NA	8	True	TATAAA	-13	NA	127070661	127075930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
transcript_53158.nic	chr7	+	2465	10	ISM	ENSMUSG00000030822.16	ENSMUST00000033095.10	2402	11	27	0	27	0	intron_retention	FALSE	canonical	3	203	junction_3	16.1229841308596	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGACTCCTTTGTGC	NA	False	NA	8	True	TATAAA	-13	NA	127070688	127075930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393
transcript_5316.nic	chr10	-	581	5	ISM	ENSMUSG00000019948.5	ENSMUST00000020109.5	1705	11	-26	13811	-26	-157	5prime_fragment	FALSE	canonical	3	288	junction_3	8.61321658847611	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAATTATTCGGTGAGC	NA	False	NA	NA	False	AAAAAG	-7	NA	89568183	89561643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_89561766_89562498_89562623_89564015_89564085_89564761_89564880_89568035
transcript_53161.nic	chr7	+	2760	9	NIC	ENSMUSG00000030822.16	novel	2402	11	NA	NA	-147	0	intron_retention	FALSE	canonical	3	203	junction_3	15.3276710559693	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTCTGACTCCTTTGTGC	NA	False	NA	8	True	TATAAA	-13	NA	127070473	127075930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127075171_127075393
transcript_53163.known	chr7	-	3621	3	FSM	ENSMUSG00000048921.12	ENSMUST00000053392.11	3621	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	4.5	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCTGCTCCTTCTGGAA	4357	False	NA	NA	False	ATTAAA	-14	NA	127048330	127041307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127044310_127047534_127047649_127047825
transcript_53164.nic	chr7	-	1556	2	ISM	ENSMUSG00000048921.12	ENSMUST00000106299.2	1417	4	-209	3715	-44	-3715	5prime_fragment	FALSE	canonical	3	56	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAGGATGTACCACAGGC	4313	False	NA	NA	False	NA	NA	NA	127048374	127046641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_127047649_127047825
transcript_53165.known	chr7	+	1656	1	FSM	ENSMUSG00000030822.16	ENSMUST00000206118.2	1656	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	127070620	127072276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127070600_127072300
transcript_53166.known	chr7	+	2175	13	FSM	ENSMUSG00000030822.16	ENSMUST00000106292.8	2175	13	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_1	75.4609446446748	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCTGACTCCTTTGTGCC	NA	False	NA	9	True	TATAAA	-14	NA	127069542	127075931	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127069596_127070156_127070292_127071077_127071150_127071269_127071439_127072766_127072889_127072968_127073159_127073550_127073595_127073685_127073892_127074223_127074798_127074928_127074999_127075078_127075171_127075393_127075466_127075555
transcript_53167.known	chr7	+	2048	10	FSM	ENSMUSG00000053877.13	ENSMUST00000188124.7	2048	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_9	13.723009424114	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTTCAGTTATTGAGTATT	NA	False	NA	NA	False	AATAAA	-19	NA	127111154	127128494	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802_127125078_127127567_127127662_127128309
transcript_53170.known	chr7	+	2904	8	FSM	ENSMUSG00000053877.13	ENSMUST00000185401.7	2904	8	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	6.55588223176215	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATTTATGCTCT	NA	False	NA	NA	False	TTTAAA	-18	NA	127111154	127126212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752_127119005_127120647_127120834_127121160_127121302_127124464_127124688_127124802
transcript_53172.nic	chr7	+	1824	4	ISM	ENSMUSG00000053877.13	ENSMUST00000189136.7	1960	6	3	2103	3	765	5prime_fragment	FALSE	canonical	3	58	junction_2	2.05480466765633	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTCTTCTTCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	127111176	127119906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_127111511_127113336_127113413_127115113_127115374_127118752
transcript_53173.known	chr7	-	2432	1	FSM	ENSMUSG00000101225.2	ENSMUST00000185351.2	2432	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAATTCCTA	10001	False	NA	NA	False	AATAAA	-35	NA	127112041	127109609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127109600_127112000
transcript_53175.nic	chr7	+	1563	10	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_3	38.5313724991294	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCAGTGCCATGTCTGCT	NA	False	NA	19	True	AATAAA	-20	NA	127172511	127182472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_127172629_127173025_127173139_127176706_127176819_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_53178.known	chr7	+	1570	10	FSM	ENSMUSG00000030815.12	ENSMUST00000033086.8	1570	10	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	31.2018517968975	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATGTCTGCTGTCTAGT	NA	False	NA	26	True	AATAAA	-27	NA	127172575	127182479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127172629_127173025_127173139_127176706_127176883_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_53179.nic	chr7	+	1508	9	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_3	33.5016324229134	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCAGTGCCATGTCTGCT	NA	False	NA	19	True	AATAAA	-20	NA	127172511	127182472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_127172629_127173025_127173139_127176706_127176819_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_5318.known	chr10	-	594	6	FSM	ENSMUSG00000019948.5	ENSMUST00000220388.2	594	6	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	125.158459562268	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAAAAGAGATCATATCCTA	NA	False	NA	NA	False	GATAAA	-29	NA	89568135	89561486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_89561521_89561629_89561766_89562498_89562623_89564002_89564085_89564761_89564880_89568035
transcript_53181.nic	chr7	+	1550	9	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_3	38.180492401225	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCAGTGCCATGTCTGCT	NA	False	NA	19	True	AATAAA	-20	NA	127172511	127182472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_127172629_127173025_127173139_127176706_127176861_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_53183.nic	chr7	+	1891	9	NIC	ENSMUSG00000030815.12	novel	1570	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	65	junction_3	23.0475052879916	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCCAGTGCCATGTCTGCT	NA	False	NA	19	True	AATAAA	-20	NA	127172511	127182472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_127172629_127173025_127173139_127176706_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_53184.known	chr7	-	2536	9	FSM	ENSMUSG00000057176.5	ENSMUST00000072155.5	2536	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	3.80788655293195	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATCATGCGTAGCATCAGG	8286	False	NA	NA	False	AGTAAA	-18	NA	127187767	127181554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127182762_127183992_127184086_127184164_127184226_127184316_127184434_127184625_127184697_127185446_127185617_127185994_127186061_127186735_127186768_127187048
transcript_53185.nic	chr7	-	1341	8	NIC	ENSMUSG00000057176.5	novel	2536	9	NA	NA	-16	0	intron_retention	FALSE	canonical	3	22	junction_2	2.18529407725405	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCACGAGCACCTTCTGGG	8696	False	NA	-4	True	AATAAA	-30	NA	127187357	127182531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_127182762_127183992_127184086_127184164_127184226_127184316_127184697_127185446_127185617_127185994_127186061_127186735_127186768_127187048
transcript_53186.known	chr7	+	1722	9	FSM	ENSMUSG00000030815.12	ENSMUST00000154891.8	1722	9	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	40.5768945953236	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGCCATGTCTGCTGTCTA	NA	False	NA	24	True	AATAAA	-25	NA	127172754	127182477	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127173139_127176706_127176819_127177146_127177202_127178838_127178905_127178981_127179146_127181294_127181386_127181465_127181620_127181690_127181817_127181907
transcript_53188.known	chr7	+	5279	20	FSM	ENSMUSG00000030816.9	ENSMUST00000205694.2	5279	20	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_5	49.1177002358039	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTGTGCTTTCTTCTCTC	NA	False	NA	NA	False	AAAACA	-27	NA	127187938	127203971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127187984_127188096_127188301_127188683_127188852_127188928_127189071_127189678_127189886_127190486_127190609_127190704_127190852_127190934_127191010_127191760_127191881_127191968_127192149_127193778_127193915_127195017_127195140_127195226_127195655_127195736_127195855_127195975_127196126_127196300_127196514_127196588_127196715_127199477_127199619_127199696_127199799_127201638
transcript_53189.known	chr7	-	1132	6	FSM	ENSMUSG00000030814.18	ENSMUST00000061468.9	1132	6	0	0	0	0	multi-exon	FALSE	canonical	3	471	junction_4	29.8971570554794	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGTGTCATGTCATTTCC	NA	False	NA	NA	False	AATAAA	-14	NA	127308105	127304149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127304348_127304898_127304985_127306347_127306510_127306604_127306714_127307051_127307131_127307607
transcript_5319.known	chr10	+	6448	21	FSM	ENSMUSG00000019951.11	ENSMUST00000020112.7	6448	21	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_11	11.4144645078076	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATACTTTGTCCGATTGGTT	NA	False	NA	21	True	TATAAA	-32	NA	89580852	89655733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_89581151_89608448_89608612_89609941_89609981_89611800_89611893_89615696_89615887_89616988_89617130_89618431_89618603_89622966_89623148_89625159_89625244_89626412_89626596_89627224_89627344_89630344_89630487_89638880_89639075_89640573_89642076_89642485_89642659_89644379_89644523_89645489_89645641_89647348_89647603_89647905_89648015_89651901_89652084_89653796
transcript_53192.known	chr7	+	2601	9	FSM	ENSMUSG00000030811.15	ENSMUST00000188580.3	2601	9	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_3	39.2681088798531	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGAAGTGTTACTTGAAC	2905	False	NA	11	True	NA	NA	NA	127347318	127367899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127347623_127348881_127349026_127349152_127349240_127350036_127350070_127351181_127351694_127360423_127360588_127361611_127361774_127366616_127366836_127366923
transcript_53194.nic	chr7	+	1521	2	ISM	ENSMUSG00000030811.15	ENSMUST00000188580.3	2601	9	19173	-201	19046	0	3prime_fragment	FALSE	canonical	3	128	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCCTCCAGTTTGGCTCTTC	NA	False	NA	4	True	NA	NA	NA	127366491	127368100	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_127366836_127366923
transcript_53195.nic	chr7	+	2069	2	ISM	ENSMUSG00000030811.15	ENSMUST00000206893.2	3449	10	19046	7	19046	0	3prime_fragment	FALSE	canonical	3	128	junction_1	0	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCGGGGCCGCTGACTTTT	NA	False	NA	8	True	TATAAA	-12	NA	127366491	127368648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_127366836_127366923
transcript_53196.nnic	chr7	+	897	3	NNC	ENSMUSG00000043964.15	novel	2141	3	NA	NA	2	-142	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	34	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCCTATGGCTATGAATG	NA	False	NA	15	True	AATAAA	-15	NA	127368988	127374180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_127369389_127372728_127373126_127374080
transcript_53197.known	chr7	+	1996	2	FSM	ENSMUSG00000043964.15	ENSMUST00000061587.13	1996	2	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTTATTCCCAGACTA	NA	False	NA	NA	False	GATAAA	-15	NA	127368986	127374322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127369389_127372728
transcript_5320.known	chr10	-	2710	5	FSM	ENSMUSG00000019979.13	ENSMUST00000161987.8	2710	5	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	12.1449578014911	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATGATTAAAAATAAAA	NA	False	NA	NA	False	NA	NA	NA	90918291	90901253	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_90903127_90913395_90913594_90915308_90915499_90915748_90915951_90918044
transcript_53200.known	chr7	+	1828	7	FSM	ENSMUSG00000042289.12	ENSMUST00000046863.12	1828	7	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_6	10.2794292967395	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1884	False	NA	14	True	AATAAA	-15	NA	127399775	127402974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407_127401571_127401957
transcript_53201.known	chr7	+	1725	7	FSM	ENSMUSG00000042289.12	ENSMUST00000106272.8	1725	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	32.540999779765	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1894	False	NA	14	True	AATAAA	-15	NA	127399785	127402974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401500_127401571_127401957
transcript_53203.nic	chr7	+	1799	7	NIC	ENSMUSG00000042289.12	novel	1828	7	NA	NA	-23	0	combination_of_known_junctions	TRUE	canonical	3	12	junction_1	28.5389597256491	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1861	False	NA	14	True	AATAAA	-15	NA	127399752	127402974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_127399887_127400298_127400419_127400632_127400789_127401005_127401115_127401185_127401286_127401407_127401571_127401957
transcript_53206.known	chr7	+	1899	6	FSM	ENSMUSG00000042289.12	ENSMUST00000132702.8	1899	6	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_5	11.2178429299041	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTACCTTTTACCCA	1884	False	NA	14	True	AATAAA	-15	NA	127399775	127402974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127399887_127400246_127400419_127400632_127400789_127401005_127401286_127401407_127401571_127401957
transcript_5321.known	chr10	+	1328	3	FSM	ENSMUSG00000019975.13	ENSMUST00000020150.10	1328	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	32.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACTATTTTGCTCCATAAT	638	False	NA	12	True	AATAAA	-17	NA	90918801	90938469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_90919159_90929000_90929119_90937616
transcript_53210.known	chr7	+	6487	19	FSM	ENSMUSG00000042308.15	ENSMUST00000047075.14	6487	19	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	14.5429334585649	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGTCAGTATCTTTGG	NA	False	NA	17	True	ATTAAA	-17	NA	127375841	127399294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127376520_127377284_127377450_127377677_127377774_127379556_127379828_127382800_127382923_127383144_127383375_127384019_127384909_127385052_127385845_127386297_127386475_127386670_127386759_127387368_127387527_127387653_127387742_127390386_127390705_127394814_127395871_127396245_127396419_127396498_127396610_127396775_127396896_127398262_127398401_127398477
transcript_53215.known	chr7	+	1456	11	FSM	ENSMUSG00000030805.15	ENSMUST00000033075.14	1456	11	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_3	24.7872951327893	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTGCAGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	127440935	127448191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447671_127447740_127447840_127447922
transcript_53216.known	chr7	+	1316	10	FSM	ENSMUSG00000030805.15	ENSMUST00000121705.8	1316	10	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_3	22.9965107390847	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAATAAGAAGAAGCTTGGAG	NA	False	NA	NA	False	NA	NA	NA	127441139	127448172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447671_127447740
transcript_53217.nic	chr7	+	1359	10	NIC	ENSMUSG00000030805.15	novel	1456	11	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_9	69.4294205970671	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTGCAGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	127440933	127448191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447671_127447922
transcript_53218.nic	chr7	+	1801	10	NIC	ENSMUSG00000030805.15	novel	1456	11	NA	NA	-275	0	intron_retention	FALSE	canonical	3	172	junction_3	25.7681974534502	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTGCAGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	127440660	127448191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_127441241_127441435_127441538_127441616_127441717_127441855_127441931_127442743_127442815_127445191_127445301_127445371_127445449_127445659_127445798_127447559_127447840_127447922
transcript_5322.known	chr10	+	3232	3	FSM	ENSMUSG00000019975.13	ENSMUST00000020149.6	3232	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	27	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAGAGAGTACTGTCCAT	755	False	NA	13	True	AATAAA	-19	NA	90918918	90934519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_90919159_90929000_90929119_90931645
transcript_53226.known	chr7	+	546	2	FSM	ENSMUSG00000030805.15	ENSMUST00000125861.2	546	2	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTGCAGTGTGTTC	NA	False	NA	NA	False	NA	NA	NA	127447562	127448191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127447840_127447922
transcript_53227.known	chr7	-	5768	3	FSM	ENSMUSG00000049728.15	ENSMUST00000054415.12	5768	3	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	4	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAGAAAAAAACAC	NA	False	NA	NA	False	AATAAA	-41	NA	127476000	127462218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127466536_127466927_127467597_127475218
transcript_53229.known	chr7	-	387	3	FSM	ENSMUSG00000096145.3	ENSMUST00000119922.2	387	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	149.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGCCCAAGTGTGTGGGT	NA	False	NA	NA	False	NA	NA	NA	127494481	127492409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127492664_127493676_127493787_127494458
transcript_53230.known	chr7	-	748	3	FSM	ENSMUSG00000096145.3	ENSMUST00000033074.8	748	3	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_2	18.5	398	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTAGCATATGTCTGCC	NA	False	NA	-11	True	AATAAA	-19	NA	127494789	127492234	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127492664_127493676_127493787_127494580
transcript_53231.known	chr7	+	6310	3	FSM	ENSMUSG00000049739.11	ENSMUST00000050383.8	6310	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	27	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTACTGGTGTGGTTATATC	1663	False	NA	20	True	AAAACA	-19	NA	127476872	127485168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127477280_127477741_127483091_127484614
transcript_53234.known	chr7	+	3405	12	FSM	ENSMUSG00000030802.15	ENSMUST00000071056.14	3405	12	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_9	38.261820946588	406	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCCTAGTGCCTTCTCTC	NA	False	NA	NA	False	NA	NA	NA	127503253	127509393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127503342_127503934_127504298_127504393_127504463_127504541_127504653_127504920_127504969_127505044_127505165_127505243_127505343_127505520_127505595_127506390_127506520_127506613_127506704_127507092_127507252_127507338
transcript_53242.nnic	chr7	+	1446	12	NNC	ENSMUSG00000030801.11	novel	1579	11	NA	NA	0	-74	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	91.4521958852351	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGGAGGTACGCAGAGAT	NA	False	NA	18	True	AGTAAA	-19	NA	127511687	127524935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_127511758_127511816_127511915_127514399_127514475_127514550_127514727_127519407_127519462_127519593_127519759_127521330_127521421_127523549_127523691_127523775_127523870_127523967_127524119_127524280_127524436_127524758
transcript_53243.known	chr7	+	1579	11	FSM	ENSMUSG00000030801.11	ENSMUST00000033070.9	1579	11	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_2	15.0053323855222	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGATTCCTCGCTCCTTT	NA	False	NA	92	True	NA	NA	NA	127511687	127525009	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127511915_127514399_127514475_127514550_127514727_127519407_127519462_127519593_127519759_127521330_127521421_127523549_127523691_127523775_127523870_127523967_127524119_127524280_127524436_127524758
transcript_53244.nnic	chr7	+	1336	11	NNC	ENSMUSG00000030801.11	novel	660	2	NA	NA	275	-74	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	93.4796234481077	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTTGGAGGTACGCAGAGAT	NA	False	NA	18	True	AGTAAA	-19	NA	127511962	127524935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_127512021_127514399_127514475_127514550_127514727_127519407_127519462_127519593_127519759_127521330_127521421_127523549_127523691_127523775_127523870_127523967_127524119_127524280_127524436_127524758
transcript_53250.known	chr7	-	1852	6	FSM	ENSMUSG00000030800.11	ENSMUST00000032988.10	1852	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	2.78567765543682	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTACACATATTTACAG	NA	False	NA	NA	False	AATAAA	-14	NA	127529276	127524887	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127525813_127525916_127526084_127526170_127526443_127526980_127527144_127528728_127528747_127528969
transcript_53253.known	chr7	+	1014	3	FSM	ENSMUSG00000030801.11	ENSMUST00000206071.2	1014	3	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAACAAAGTATGTGTGTT	NA	False	NA	NA	False	NA	NA	NA	127511687	127515262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127511915_127514399_127514475_127514550
transcript_53254.known	chr7	-	1709	7	FSM	ENSMUSG00000030800.11	ENSMUST00000206124.2	1709	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	11.3932241071417	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCTGTACACATATTTACAG	NA	False	NA	NA	False	AATAAA	-14	NA	127529276	127524887	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127525813_127525916_127526084_127526170_127526443_127526980_127527144_127528728_127528747_127528969_127529086_127529228
transcript_53255.known	chr7	-	1132	6	FSM	ENSMUSG00000070371.12	ENSMUST00000156152.3	1132	6	0	0	0	0	multi-exon	TRUE	canonical	3	17	junction_5	34.92506263416	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGAATGTGGCTCAACC	NA	False	NA	NA	False	NA	NA	NA	127534622	127531970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127532287_127532542_127532665_127532738_127533005_127533310_127533453_127533561_127533800_127534574
transcript_53261.nnic	chr7	-	1182	5	NIC	ENSMUSG00000070371.12	novel	1132	6	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_4	36.0589794642056	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534653	127531809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_127532287_127532542_127532665_127532738_127533005_127533561_127533800_127534574
transcript_53262.nnic	chr7	-	1183	5	NIC	ENSMUSG00000070371.12	novel	3028	15	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_3	30.0863341070327	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534698	127531809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_127532287_127532542_127532665_127532738_127533005_127533561_127533800_127534618
transcript_53264.known	chr7	-	1016	5	FSM	ENSMUSG00000070371.12	ENSMUST00000153110.8	1016	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	32.1820990614348	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534651	127531809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127532287_127532542_127532665_127532738_127533005_127533681_127533800_127534618
transcript_53267.known	chr7	-	1052	5	FSM	ENSMUSG00000070371.12	ENSMUST00000152697.3	1052	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	39.2778563569857	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534691	127531809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127532287_127532542_127532665_127533310_127533453_127533561_127533800_127534618
transcript_53271.nic	chr7	-	917	4	NIC	ENSMUSG00000070371.12	novel	1052	5	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_2	36.3409777890836	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534698	127531809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_127532287_127532542_127532665_127533561_127533800_127534618
transcript_53272.known	chr7	-	480	4	FSM	ENSMUSG00000070371.12	ENSMUST00000141385.7	480	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	44.7735040695573	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCTGCTAGCTCCCCTAA	NA	False	NA	NA	False	NA	NA	NA	127534601	127532073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127532287_127532542_127532665_127533681_127533800_127534574
transcript_53273.nic	chr7	-	797	4	NIC	ENSMUSG00000070371.12	novel	1016	5	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	2	6	junction_2	40.8683523306509	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACGTGGCTTTGTGGCATCT	NA	False	NA	NA	False	AATAAA	-15	NA	127534698	127531809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_127532287_127532542_127532665_127533681_127533800_127534618
transcript_53278.known	chr7	+	1831	15	FSM	ENSMUSG00000030795.19	ENSMUST00000077609.12	1831	15	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_3	273.376618440941	718	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTTTCCCCCAGTTTAC	1183	False	NA	37	True	ATTAAA	-20	NA	127566661	127581204	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571012_127571155_127571288_127571477_127571725_127571943_127573571_127573607_127575059_127575093_127576389_127576494_127577312_127577443_127579063_127579166_127579294_127579419_127580362_127580464_127580582_127580728_127580962
transcript_53287.known	chr7	+	2374	6	FSM	ENSMUSG00000030795.19	ENSMUST00000174196.8	2374	6	0	0	0	0	multi-exon	FALSE	canonical	3	619	junction_3	88.8603398598047	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACAAAAAACCAACCC	1184	False	NA	NA	False	NA	NA	NA	127566662	127573499	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127566750_127568733_127568759_127568888_127569044_127571009_127571155_127571288_127571477_127571725
transcript_53292.known	chr7	-	493	4	FSM	ENSMUSG00000030793.5	ENSMUST00000205594.2	493	4	0	0	0	0	multi-exon	FALSE	canonical	1	50	junction_1	573.463357349205	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCATTCAGTGGACAGAAGAC	NA	False	NA	NA	False	NA	NA	NA	127592699	127590811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127590848_127591882_127592138_127592286_127592344_127592554
transcript_53297.known	chr7	-	3800	3	FSM	ENSMUSG00000030793.5	ENSMUST00000033056.5	3800	3	0	0	0	0	multi-exon	FALSE	canonical	3	1219	junction_2	45	1316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAACATTTTTGCCTTTTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	127593039	127588879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127592138_127592286_127592344_127592554
transcript_53298.known	chr7	-	680	3	FSM	ENSMUSG00000030785.9	ENSMUST00000033049.9	680	3	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_1	3.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGTCTTGTGTTAGTTCT	5383	False	NA	NA	False	AATACA	-20	NA	127805559	127804606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127804985_127805071_127805209_127805394
transcript_53302.known	chr7	+	3834	6	FSM	ENSMUSG00000042178.7	ENSMUST00000044660.6	3834	6	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	5.30659966456864	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGTGTGGGGTCGTCTG	NA	False	NA	10	True	ATTAAA	-21	NA	127836528	127844272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127837762_127839053_127839162_127839254_127840042_127841351_127841849_127842511_127842645_127843196
transcript_53303.known	chr7	+	1746	11	FSM	ENSMUSG00000030782.18	ENSMUST00000167965.8	1746	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.04403065089106	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTACAGTGCCAGAGAACC	4195	False	NA	NA	False	CATAAA	-14	NA	127846149	127852879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_127846181_127847348_127847465_127847591_127847645_127847749_127847893_127848058_127848147_127848261_127848368_127848471_127848667_127851248_127851423_127851649_127851732_127851955_127852105_127852270
transcript_53304.known	chr7	-	2627	13	FSM	ENSMUSG00000030780.16	ENSMUST00000033044.16	2627	13	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_4	13.6897670623799	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCGCTTCATACTGCAGGC	1106	False	NA	-16	True	AGTAAA	-16	NA	127897342	127870550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127871788_127872643_127872722_127872822_127872967_127873804_127873876_127875257_127875316_127875399_127875585_127875666_127875738_127884284_127884387_127887435_127887542_127887630_127887664_127889761_127889808_127896633_127896749_127896961
transcript_53306.nic	chr7	+	1002	4	ISM	ENSMUSG00000030781.14	ENSMUST00000118169.8	2277	14	5088	0	190	0	3prime_fragment	FALSE	canonical	1	3	junction_1	2.82842712474619	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGTTGTGGCTGAAACAT	NA	False	NA	NA	False	AATAAA	-16	NA	127869935	127871602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_127870125_127870206_127870423_127870920_127871051_127871135
transcript_53307.known	chr7	-	1625	13	FSM	ENSMUSG00000030780.16	ENSMUST00000126263.8	1625	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	46.7953582693364	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAAGGGAACCGGTTCCT	1181	False	NA	-35	True	NA	NA	NA	127897267	127871497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127871788_127872643_127872722_127872822_127872967_127873804_127873896_127875257_127875316_127875399_127875585_127875666_127875738_127884284_127884387_127887435_127887542_127887630_127887664_127889761_127889808_127896633_127896749_127896961
transcript_53308.known	chr7	-	880	5	FSM	ENSMUSG00000030844.12	ENSMUST00000033133.12	880	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_4	4.32290411644765	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTTTAGTCATTTCTACTT	NA	False	NA	NA	False	ATTAAA	-24	NA	128019897	127975344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127975767_127990687_127990832_128004893_128004981_128006082_128006202_128019789
transcript_53309.known	chr7	-	458	3	FSM	ENSMUSG00000030844.12	ENSMUST00000134144.2	458	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	8	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCCCAGCGAAGGAGAGGG	9751	False	NA	NA	False	NA	NA	NA	127995409	127975608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_127975767_127990687_127990832_127995253
transcript_53312.known	chr7	-	2319	13	FSM	ENSMUSG00000030846.16	ENSMUST00000123666.8	2319	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_8	77.5911650182473	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGACTATAAATTTTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	128063441	128044003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128048454_128048832_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
transcript_53313.known	chr7	-	2835	13	FSM	ENSMUSG00000030846.16	ENSMUST00000106228.8	2835	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_12	81.5772895275803	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCAGGGTTGCTATAAGT	NA	False	NA	NA	False	ATTAAA	-14	NA	128063397	128043126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128060320_128060381_128062848
transcript_53315.known	chr7	-	1580	12	FSM	ENSMUSG00000030846.16	ENSMUST00000033135.9	1580	12	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_7	29.2730095977351	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTGACTATAAATTTTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	128063079	128044003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
transcript_53316.known	chr7	-	4451	12	FSM	ENSMUSG00000030846.16	ENSMUST00000106226.9	4451	12	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_10	64.264304450031	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTTTCTCTTAGTGTTG	NA	False	NA	-6	True	AATAAA	-16	NA	128063396	128041500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050495_128056659_128056757_128062848
transcript_53322.known	chr7	-	4266	11	FSM	ENSMUSG00000030846.16	ENSMUST00000141079.8	4266	11	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_6	28.929051142407	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAAAAAAAATTTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	128063376	128041948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_128044384_128045530_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848
transcript_53324.known	chr7	-	2003	13	FSM	ENSMUSG00000030846.16	ENSMUST00000165023.8	2003	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_12	66.4515278647192	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATACTTGTGCTTTTACATGG	NA	False	NA	NA	False	ATTAAA	-12	NA	128063047	128043518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_128044384_128045530_128045671_128046004_128046129_128046336_128046422_128046535_128046632_128047374_128047484_128047918_128047995_128049844_128049933_128050065_128050121_128050344_128050444_128056659_128056757_128062848_128062903_128062932
transcript_53325.known	chr7	+	2562	4	FSM	ENSMUSG00000030847.9	ENSMUST00000033136.9	2562	4	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_2	8.2192186706253	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTTTTGTGGTTTCTAA	7142	False	NA	17	True	AATAAA	-22	NA	128125339	128148705	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_128125769_128141696_128142036_128143530_128143933_128147313
transcript_53326.nic	chr7	+	1500	9	ISM	ENSMUSG00000042105.19	ENSMUST00000098007.11	1906	10	4	1503	4	1343	5prime_fragment	TRUE	canonical	3	45	junction_6	9.36416040016402	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATACTCTCGAATCAGCTG	7148	False	NA	NA	False	ATTAAA	-41	NA	128213055	128271843	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_128213416_128237881_128237963_128260739_128260877_128265361_128265491_128265700_128265869_128265972_128266030_128269320_128269520_128270137_128270318_128271654
transcript_53327.known	chr7	+	4505	19	FSM	ENSMUSG00000055319.9	ENSMUST00000042942.10	4505	19	0	0	0	0	multi-exon	TRUE	canonical	3	121	junction_10	14.275615919341	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGTCTCTCCCTGTTTC	1931	False	NA	23	True	AATAAA	-35	NA	128346666	128386560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_128346903_128351782_128352310_128354429_128354641_128355773_128355968_128357039_128357130_128359486_128359608_128363139_128363230_128364113_128364256_128365664_128365874_128367107_128367227_128367849_128368003_128369290_128369387_128373888_128374087_128378494_128378651_128379007_128379111_128380152_128380339_128380786_128380950_128381359_128381462_128385151
transcript_53330.known	chr7	+	4550	29	FSM	ENSMUSG00000042055.14	ENSMUST00000084519.7	4550	29	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_20	18.5519128228804	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTGTTTGAGTCTCTT	NA	False	NA	6	True	AATAAA	-19	NA	129193586	129237462	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_129193788_129194699_129194812_129200748_129200903_129202160_129202335_129204722_129204910_129206801_129206968_129207418_129207534_129208240_129208437_129208720_129208822_129209484_129209662_129210565_129210651_129215590_129215698_129218317_129218394_129220349_129220459_129221617_129221743_129222069_129222218_129225974_129226082_129226428_129226544_129226879_129227052_129229728_129229838_129230717_129230781_129231641_129231708_129232343_129232522_129232897_129232994_129233431_129233598_129234047_129234146_129234433_129234580_129235373_129235454_129236541
transcript_53331.known	chr7	-	4685	12	FSM	ENSMUSG00000030850.18	ENSMUST00000035458.15	4685	12	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_5	43.8843333177548	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCGGCCGTGGTTCT	NA	False	NA	-15	True	AATAAA	-16	NA	130121260	129993222	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130105451_130105581_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121085
transcript_53332.known	chr7	-	1530	12	FSM	ENSMUSG00000030850.18	ENSMUST00000178534.8	1530	12	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_11	65.693629010445	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCTGCACCTCAGCCCAG	NA	False	NA	NA	False	NA	NA	NA	130121691	129996287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130105451_130105581_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121606
transcript_53333.known	chr7	-	4735	12	FSM	ENSMUSG00000030850.18	ENSMUST00000033139.15	4735	12	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_5	49.9651117950737	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCGGCCGTGGTTCT	NA	False	NA	-15	True	AATAAA	-16	NA	130121310	129993222	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130106423_130106553_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121085
transcript_53334.known	chr7	-	1938	12	FSM	ENSMUSG00000030850.18	ENSMUST00000094017.5	1938	12	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_11	68.2405807383271	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCCTGCACCTCAGCCCAG	NA	False	NA	NA	False	NA	NA	NA	130122099	129996287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_129996467_130020177_130020299_130065860_130065961_130068985_130069168_130083412_130083446_130106423_130106553_130109211_130109430_130110736_130110989_130112540_130112645_130115491_130115555_130117834_130117899_130121606
transcript_5334.known	chr10	-	1612	8	FSM	ENSMUSG00000061904.13	ENSMUST00000076694.13	1612	8	0	0	0	0	multi-exon	FALSE	canonical	1	1248	junction_7	1021.77973983373	5401	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTAGTTTTATTTTTTTGA	NA	False	NA	0	True	ATTAAA	-18	NA	90959921	90952435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419_90959569_90959777
transcript_53342.known	chr7	+	2248	1	FSM	ENSMUSG00000030852.19	ENSMUST00000208661.2	2248	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	130294332	130296580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_130294300_130296600
transcript_53343.known	chr7	+	3492	16	FSM	ENSMUSG00000030852.19	ENSMUST00000207549.2	3492	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	100.624626983436	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAAAAAAAAAAAAGAAT	NA	False	NA	-47	True	NA	NA	NA	130247959	130366438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_130248161_130276331_130276470_130318432_130318570_130330252_130331559_130335247_130335297_130336678_130336881_130341541_130341604_130342569_130342686_130343859_130344032_130352919_130353064_130353563_130353641_130355347_130355392_130360894_130361056_130361263_130361371_130361644_130361766_130365983
transcript_53355.known	chr7	+	2041	9	FSM	ENSMUSG00000006205.14	ENSMUST00000006367.8	2041	9	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_3	16.015617378047	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGCGTGCTTCTTTTAT	6622	False	NA	19	True	ATTAAA	-20	NA	130537932	130587390	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_130538474_130563242_130563343_130563702_130563908_130581030_130581226_130581681_130581715_130583386_130583502_130583966_130584025_130585389_130585486_130586692
transcript_53356.known	chr7	-	6773	6	FSM	ENSMUSG00000040177.11	ENSMUST00000059438.11	6773	6	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_5	3.61109401705356	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACCTGTTTTCAGTAATAAA	NA	False	NA	NA	False	AATAAA	-15	NA	130964488	130939948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_130945534_130952379_130952832_130959188_130959396_130962617_130962691_130963461_130963666_130964236
transcript_5336.known	chr10	-	1341	8	FSM	ENSMUSG00000061904.13	ENSMUST00000170810.8	1341	8	0	0	0	0	multi-exon	FALSE	canonical	1	85	junction_6	1787.71823557179	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTATGAGTTTGTTATT	NA	False	NA	-5	True	AATAAA	-15	NA	90959865	90952653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90958068_90958194_90959419_90959569_90959777
transcript_53367.known	chr7	+	1135	6	FSM	ENSMUSG00000063179.14	ENSMUST00000075610.13	1135	6	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	32.2713495224479	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGATTTGGATAAATTT	NA	False	NA	22	True	ATTAAA	-22	NA	130972869	130989568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_130973119_130975264_130975560_130975793_130975993_130985653_130985730_130986228_130986323_130989346
transcript_53369.nic	chr7	+	1204	6	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_5	73.3746550247427	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAACTTGTTTATACTTACAA	NA	False	NA	NA	False	AATAAA	-21	NA	130972847	130994497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_130973119_130975264_130975560_130975793_130975993_130985653_130985730_130986228_130986323_130994228
transcript_53370.nic	chr7	+	921	6	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_5	89.7226838653414	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTCAAATGTCTGATTTGGA	NA	False	NA	15	True	ATTAAA	-15	NA	130972847	130989561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_130973119_130975793_130975993_130985653_130985730_130986228_130986323_130986527_130986594_130989346
transcript_53371.nic	chr7	+	862	5	NIC	ENSMUSG00000063179.14	novel	1135	6	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_1	59.6547357717726	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGATTTGGATAAATTT	NA	False	NA	22	True	ATTAAA	-22	NA	130972847	130989568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_130973119_130975793_130975993_130985653_130985730_130986228_130986323_130989346
transcript_53374.known	chr7	-	4430	4	FSM	ENSMUSG00000040167.17	ENSMUST00000046306.15	4430	4	0	0	0	0	multi-exon	TRUE	canonical	3	63	junction_1	6.97614984548545	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTTTGTTTTTTTTTTA	NA	False	NA	-2	True	AATAAA	-17	NA	131012250	130990380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_130994310_130995483_130995667_130998397_130998581_131012115
transcript_53376.known	chr7	+	675	1	FSM	ENSMUSG00000063179.14	ENSMUST00000207419.2	675	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAGGTTA	NA	False	NA	NA	False	AAGAAA	-10	NA	130972884	130973559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_130972900_130973600
transcript_53377.known	chr7	-	2231	4	FSM	ENSMUSG00000040167.17	ENSMUST00000121033.8	2231	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	34.7658836600865	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTATTGGTTTCTGTGTACC	NA	False	NA	NA	False	AATAAA	-13	NA	131012226	130992096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_130993851_130995483_130995667_130998397_130998581_131012115
transcript_53378.known	chr7	+	6081	11	FSM	ENSMUSG00000030861.16	ENSMUST00000015829.15	6081	11	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_4	19.6022957839127	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TTAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	131012329	131050673	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_131012517_131026200_131026361_131027503_131027605_131030157_131030365_131031675_131031847_131033665_131033792_131035998_131036092_131039130_131039221_131042930_131043069_131045197_131045298_131045965
transcript_53383.known	chr7	+	832	2	FSM	ENSMUSG00000066979.7	ENSMUST00000208848.2	832	2	0	0	0	0	multi-exon	FALSE	canonical	3	1386	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	131162119	131163206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_131162184_131162438
transcript_53384.known	chr7	+	2128	9	FSM	ENSMUSG00000066979.7	ENSMUST00000207736.2	2128	9	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_4	579.695609781547	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGGTGTGTTACCTTGG	NA	False	NA	11	True	ATTAAA	-20	NA	131162108	131173624	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_131162184_131162438_131162634_131163265_131163336_131164026_131164092_131165062_131165215_131167921_131168081_131169912_131170091_131170233_131170451_131172607
transcript_53385.known	chr7	-	801	1	FSM	ENSMUSG00000062758.7	ENSMUST00000085365.6	801	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACACTGAATTTTCTGT	NA	False	NA	NA	False	AAAAAG	-36	NA	131216717	131215916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_131215900_131216700
transcript_53388.known	chr7	-	2152	10	FSM	ENSMUSG00000030934.10	ENSMUST00000084500.8	2152	10	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_6	42.9636653837854	217	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAATGATGTGAATCTATTTA	NA	False	NA	-5	True	AATAAA	-24	NA	132178127	132159206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_132160060_132161374_132161520_132162480_132162595_132163512_132163642_132164315_132164439_132165935_132166064_132168497_132168594_132168794_132169020_132171634_132171870_132178023
transcript_53394.known	chr7	+	1612	7	FSM	ENSMUSG00000030946.14	ENSMUST00000033241.6	1612	7	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_6	19.9979165581484	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTGACTCAGCCTTTCTTA	NA	False	NA	12	True	AATAAA	-20	NA	132212367	132308149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_132212560_132232210_132232399_132235729_132235884_132243252_132243317_132244215_132244309_132251986_132252079_132307320
transcript_53400.nnic	chr7	+	1280	5	NIC	ENSMUSG00000030946.14	novel	1612	7	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_1	131.685942681822	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTTTGACTCAGCCTTTC	NA	False	NA	9	True	AATAAA	-17	NA	132212354	132308146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_132212560_132243252_132243317_132244215_132244309_132251986_132252079_132307320
transcript_53402.known	chr7	-	1232	4	FSM	ENSMUSG00000030956.16	ENSMUST00000106165.8	1232	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	47.005909793935	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132414824	132360996	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_132361897_132373306_132373359_132380864_132381115_132414794
transcript_53405.known	chr7	-	1107	6	FSM	ENSMUSG00000030960.17	ENSMUST00000033257.15	1107	6	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_3	60.7651215747982	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGTTTTTGGTTTTTGTGC	NA	False	NA	NA	False	AGTAAA	-18	NA	132454402	132429185	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_132429612_132433088_132433306_132438828_132438937_132452323_132452439_132453154_132453221_132454227
transcript_5341.known	chr10	-	1483	7	FSM	ENSMUSG00000061904.13	ENSMUST00000164505.2	1483	7	0	0	0	0	multi-exon	FALSE	canonical	3	3785	junction_3	269.875073979713	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCATCTATTCCTGATGT	NA	False	NA	-21	True	NA	NA	NA	90959817	90952669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_90952987_90953074_90953186_90953905_90954079_90954560_90954743_90955388_90955569_90957783_90957906_90959419
transcript_53412.nic	chr7	-	903	5	NIC	ENSMUSG00000030960.17	novel	1107	6	NA	NA	-16	-3	combination_of_known_junctions	FALSE	canonical	3	26	junction_1	142.065785817698	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAATCTGTTTTTGGTTTTTG	NA	False	NA	NA	False	AGTAAA	-15	NA	132454418	132429188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_132429612_132438828_132438937_132452323_132452439_132453154_132453221_132454227
transcript_53414.known	chr7	-	573	4	FSM	ENSMUSG00000030960.17	ENSMUST00000120425.8	573	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	170.763644322269	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATGGGAATCAGTACTTAG	NA	False	NA	NA	False	NA	NA	NA	132454345	132429337	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_132429612_132452323_132452439_132453154_132453221_132454227
transcript_53415.known	chr7	-	811	3	FSM	ENSMUSG00000030960.17	ENSMUST00000154914.2	811	3	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_1	20.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCATAGTCTTGAAAGAGTAA	NA	False	NA	NA	False	CATAAA	-11	NA	132454368	132451834	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_132452439_132453154_132453221_132454227
transcript_53416.known	chr7	+	2892	9	FSM	ENSMUSG00000030965.20	ENSMUST00000084497.12	2892	9	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_8	19.6273883896967	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACGATATTTTAGTGTCTGT	NA	False	NA	16	True	AATAAA	-18	NA	132460953	132486840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478326_132478447_132480257_132480343_132482495_132482611_132484763
transcript_53418.known	chr7	+	2827	9	FSM	ENSMUSG00000030965.20	ENSMUST00000129552.2	2827	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	67.4532245337464	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATACGATATTTTAGTGTC	NA	False	NA	13	True	AATAAA	-15	NA	132460977	132486837	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_132461063_132466691_132466783_132470761_132470799_132473300_132473368_132476555_132476747_132478364_132478447_132480257_132480343_132482495_132482611_132484763
transcript_53419.known	chr7	+	1778	1	FSM	ENSMUSG00000030965.20	ENSMUST00000210077.2	1778	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	132460963	132462741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_132461000_132462700
transcript_5342.known	chr10	-	788	5	FSM	ENSMUSG00000019961.18	ENSMUST00000213262.2	788	5	0	0	0	0	multi-exon	FALSE	canonical	3	670	junction_4	84.0903531922658	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTCATCTAAGTACGTCC	NA	False	NA	NA	False	NA	NA	NA	90989556	90985545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_90985621_90987570_90987660_90988489_90988601_90988946_90989043_90989139
transcript_53422.nic	chr7	-	2187	11	NIC	ENSMUSG00000030970.17	novel	2321	11	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_10	270.834709740092	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	6269	False	NA	6	True	AGTAAA	-13	NA	132714442	132589349	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132714349
transcript_53425.nnic	chr7	-	2240	11	NNC	ENSMUSG00000030970.17	novel	2321	11	NA	NA	34	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_10	266.085625316363	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	NA	False	NA	6	True	AGTAAA	-13	NA	132724861	132589349	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132724715
transcript_53426.known	chr7	-	2321	11	FSM	ENSMUSG00000030970.17	ENSMUST00000033269.15	2321	11	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_8	136.177861636905	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAACAAA	NA	False	NA	6	True	AGTAAA	-13	NA	132725096	132589349	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132627441_132627602_132683485_132683590_132724869
transcript_53433.known	chr7	-	1997	10	FSM	ENSMUSG00000030970.17	ENSMUST00000166439.8	1997	10	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_8	235.790763073148	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GGAAAAGAACAAAAGAAAAA	NA	False	NA	43	True	NA	NA	NA	132724895	132589312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_132590081_132591718_132591837_132592159_132592288_132592767_132592899_132593290_132593506_132596887_132597095_132600535_132600681_132600919_132601075_132683485_132683590_132724869
transcript_53438.known	chr7	+	5424	25	FSM	ENSMUSG00000039990.17	ENSMUST00000051169.13	5424	25	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_10	22.9037463577953	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTTGTAATTACTTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	133239271	133274700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_133239653_133240635_133240845_133242408_133242476_133243022_133243149_133245376_133245502_133245721_133245879_133248718_133248821_133249073_133249196_133249914_133250027_133252006_133252155_133252229_133252339_133252752_133252865_133253661_133253923_133255615_133255688_133255985_133256137_133258223_133258413_133258696_133258898_133260154_133260374_133261799_133262024_133263511_133263671_133263809_133263960_133265089_133265244_133267596_133267713_133269268_133269421_133273094
transcript_53439.nic	chr7	+	1358	11	NIC	ENSMUSG00000053111.14	novel	515	5	NA	NA	-84	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_8	2.00249843945008	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTTCATATGTGGTCTC	NA	False	NA	NA	False	AATACA	-14	NA	133391129	133482568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_133391287_133454894_133455073_133463831_133463957_133469846_133469929_133471006_133471082_133471750_133471817_133478476_133478643_133481607_133481752_133482000_133482079_133482172_133482218_133482326
transcript_5344.known	chr10	-	3534	15	FSM	ENSMUSG00000019988.8	ENSMUST00000020163.7	3534	15	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_9	20.2858400398517	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAGTCTGAGCTTGAACC	NA	False	NA	-1	True	AATAAA	-19	NA	92558282	92520607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_92522158_92522581_92522649_92525496_92525654_92526489_92526647_92527695_92527899_92528749_92528798_92530841_92530971_92534031_92534228_92534587_92534790_92536581_92536812_92547032_92547174_92549935_92550053_92552027_92552123_92555347_92555492_92558184
transcript_53440.nic	chr7	+	2051	11	NIC	ENSMUSG00000053111.14	novel	515	5	NA	NA	-84	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_8	2.00249843945008	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCACAGGAGTGGACTCTTA	NA	False	NA	NA	False	AATAAA	-16	NA	133391129	133483261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_133391287_133454894_133455073_133463831_133463957_133469846_133469929_133471006_133471082_133471750_133471817_133478476_133478643_133481607_133481752_133482000_133482079_133482172_133482218_133482326
transcript_53442.known	chr7	-	2955	12	FSM	ENSMUSG00000030986.14	ENSMUST00000033290.12	2955	12	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_11	48.5725154403017	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTCAATGGGTTTCTTG	NA	False	NA	-9	True	AATAAA	-19	NA	133378532	133322670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128_133361643_133378330
transcript_53443.known	chr7	-	2644	12	FSM	ENSMUSG00000030986.14	ENSMUST00000063669.8	2644	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_11	113.27630229292	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAATTACTATTCCATGCT	NA	False	NA	-7	True	AATAAA	-22	NA	133384455	133322838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_133323126_133323877_133324060_133324770_133324959_133326128_133326279_133326932_133327125_133335696_133335856_133335937_133336038_133338917_133339164_133344157_133344531_133350571_133350766_133361128_133361643_133384396
transcript_53446.known	chr7	-	1644	10	FSM	ENSMUSG00000030979.14	ENSMUST00000106145.10	1644	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_9	18.4477908610847	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGATCTGAGTATGGTAGC	NA	False	NA	NA	False	NA	NA	NA	133310798	133288084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_133288846_133291310_133291410_133292236_133292323_133292814_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310652
transcript_53447.known	chr7	-	1762	10	FSM	ENSMUSG00000030979.14	ENSMUST00000033276.11	1762	10	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_9	13.5163367087644	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATAGGACTGATCTGAG	NA	False	NA	NA	False	NA	NA	NA	133311010	133288093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_133288846_133291310_133291410_133292236_133292323_133292814_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310737
transcript_53450.known	chr7	-	2189	9	FSM	ENSMUSG00000030979.14	ENSMUST00000135760.8	2189	9	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_8	13.9821314541096	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATTTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	133310823	133287971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_133288846_133291310_133291410_133292236_133292896_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310737
transcript_53455.known	chr7	+	1244	7	FSM	ENSMUSG00000030983.5	ENSMUST00000033282.5	1244	7	0	0	0	0	multi-exon	FALSE	canonical	3	1578	junction_1	47.9215214931895	1465	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTGAAGTGTTCATGTCC	1307	False	NA	23	True	AATAAA	-24	NA	133311061	133322874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_133311258_133315916_133315992_133316627_133316709_133318589_133318680_133319327_133319516_133320832_133321008_133322435
transcript_53457.known	chr7	-	1045	7	FSM	ENSMUSG00000030979.14	ENSMUST00000106144.8	1045	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	27.2299875545734	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCACTGTTGCTTGTACTT	NA	False	NA	NA	False	AATAAA	-14	NA	133310788	133293862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_133294386_133299397_133299473_133300872_133300948_133302542_133302640_133303567_133303652_133304058_133304199_133310737
transcript_53461.known	chr7	+	2589	21	FSM	ENSMUSG00000058325.7	ENSMUST00000211593.2	2589	21	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_11	23.1652217774836	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATGTGTTTCTGTTTTGA	NA	False	NA	7	True	NA	NA	NA	134272415	134384915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_134272574_134326058_134326143_134331746_134331788_134335778_134335835_134339358_134339456_134342714_134342864_134345932_134346069_134346678_134346837_134348157_134348240_134348636_134348773_134355090_134355164_134358605_134358686_134362540_134362667_134365577_134365703_134366948_134367048_134367919_134367993_134373195_134373300_134374020_134374205_134379123_134379222_134384077_134384168_134384475
transcript_53462.known	chr7	-	10061	14	FSM	ENSMUSG00000031004.9	ENSMUST00000033310.9	10061	14	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_9	63.2390037685062	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTTGGCCTCTCTGACAA	NA	False	NA	-18	True	AATAAA	-19	NA	135318090	135291512	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_135291863_135294808_135295226_135295960_135302797_135303630_135303787_135305796_135305969_135306067_135306187_135306271_135306525_135307338_135307515_135309089_135310050_135310494_135310541_135312573_135312641_135315485_135315602_135315689_135315769_135317776
transcript_53463.nnic	chr7	+	998	6	NNC	ENSMUSG00000054612.5	novel	2894	5	NA	NA	-28	-2081	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	98.1150345258055	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACGTGATGTGGCTGCCCT	NA	False	NA	30	True	ATTAAA	-21	NA	136496314	136729914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_136496417_136521584_136521742_136552996_136553134_136687677_136687839_136723217_136723358_136729613
transcript_53467.known	chr7	+	2894	5	FSM	ENSMUSG00000054612.5	ENSMUST00000081510.4	2894	5	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_1	21.7887585695009	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAGAAAGCTGTGTTCT	NA	False	NA	NA	False	AATAAA	-12	NA	136496342	136731995	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_136496417_136552996_136553134_136687677_136687839_136723217_136723358_136729613
transcript_53470.nnic	chr7	+	703	4	NIC	ENSMUSG00000054612.5	novel	2894	5	NA	NA	-51	-2081	combination_of_known_splicesites	FALSE	canonical	2	7	junction_2	91.8634251968045	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACGTGATGTGGCTGCCCT	NA	False	NA	30	True	ATTAAA	-21	NA	136496291	136729914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_136496417_136552996_136553134_136723217_136723358_136729613
transcript_53471.nnic	chr7	+	702	4	NIC	ENSMUSG00000054612.5	novel	2894	5	NA	NA	-26	-2081	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	106.094297678999	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACGTGATGTGGCTGCCCT	NA	False	NA	30	True	ATTAAA	-21	NA	136496316	136729914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_136496417_136687677_136687839_136723217_136723358_136729613
transcript_53475.nnic	chr7	-	1318	5	NNC	ENSMUSG00000040139.15	novel	699	5	NA	NA	-6	1	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	92.2506775042872	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGCTGTCTGGCTTGGTGTG	NA	False	NA	-6	True	ATTAAA	-15	NA	137012497	136977301	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_136978081_136978661_136978847_136989099_136989163_136989268_136989431_137012368
transcript_53476.known	chr7	-	699	5	FSM	ENSMUSG00000040139.15	ENSMUST00000117404.8	699	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	88.1373218336024	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ATTAAAAATAAAATAAAATA	NA	False	NA	NA	False	NA	NA	NA	137012464	136977865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_136978081_136978683_136978847_136989099_136989163_136989268_136989431_137012368
transcript_5348.nic	chr10	-	341	2	ISM	ENSMUSG00000019988.8	ENSMUST00000216086.2	391	4	-11	8099	5	-8099	5prime_fragment	FALSE	canonical	3	164	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TAAAACAAAACAAAAAACTA	NA	False	NA	NA	False	CATAAA	-34	NA	92558277	92555243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_92555492_92558184
transcript_53481.known	chr7	-	1126	4	FSM	ENSMUSG00000040139.15	ENSMUST00000068996.13	1126	4	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_1	38.0292285252044	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGTCTGGCTTGGTGT	NA	False	NA	-7	True	ATTAAA	-14	NA	137012491	136977302	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_136978081_136989099_136989163_136989268_136989431_137012368
transcript_53483.known	chr7	-	4643	3	FSM	ENSMUSG00000040139.15	ENSMUST00000120340.2	4643	3	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_2	37	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAGAAAAAAGAAAA	NA	False	NA	NA	False	AAGAAA	-42	NA	137012461	136984774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_136989163_136989268_136989431_137012368
transcript_53484.known	chr7	-	895	2	FSM	ENSMUSG00000040139.15	ENSMUST00000145881.8	895	2	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACAGCTGTCTGGCTTGGTGT	NA	False	NA	-7	True	ATTAAA	-14	NA	137012485	136977302	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_136978081_137012368
transcript_5349.known	chr10	-	4212	5	FSM	ENSMUSG00000008398.17	ENSMUST00000008542.12	4212	5	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_3	2.48746859276655	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTTTGTTCCCTTCCATT	NA	False	NA	NA	False	AATAAA	-33	NA	93146997	93083275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_93085971_93090550_93090674_93100741_93101543_93120630_93120840_93146613
transcript_53496.known	chr7	+	1685	11	FSM	ENSMUSG00000031068.9	ENSMUST00000064404.8	1685	11	0	0	0	0	multi-exon	FALSE	canonical	3	3305	junction_4	243.181434324251	3872	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTTGTTCCAGTAAGCTT	NA	False	NA	NA	False	TTTAAA	-17	NA	137039342	137070323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_137039501_137046707_137046817_137054425_137054501_137055141_137055344_137060851_137061025_137061209_137061272_137063074_137063133_137064689_137064743_137065826_137065867_137066143_137066237_137069661
transcript_535.known	chr1	+	3279	8	FSM	ENSMUSG00000026123.12	ENSMUST00000027297.11	3279	8	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	21.365621823817	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTCTCATTGTGACTTC	NA	False	NA	18	True	ATTAAA	-18	NA	34889072	34918661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_34889145_34900953_34900999_34902086_34902240_34902551_34902655_34903553_34903594_34905221_34905312_34908380_34908487_34915991
transcript_53509.known	chr7	+	867	2	FSM	ENSMUSG00000031068.9	ENSMUST00000211598.2	867	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAAGCTGGTTTTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	137039417	137043898	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_137039501_137043114
transcript_53513.known	chr7	+	1938	8	FSM	ENSMUSG00000041769.14	ENSMUST00000155672.8	1938	8	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_3	92.005767343628	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGCCACTGCAGTCTTTA	NA	False	NA	17	True	AATAAA	-31	NA	138448323	138484783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_138448434_138470138_138470237_138471418_138471585_138472118_138472232_138474602_138474781_138475848_138476014_138478184_138478447_138483937
transcript_53524.nic	chr7	+	1350	7	NIC	ENSMUSG00000041769.14	novel	1938	8	NA	NA	-22	-325	combination_of_known_junctions	FALSE	canonical	3	46	junction_3	298.436713931484	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTAAGTCTGAGCCTT	NA	False	NA	23	True	AATAAA	-19	NA	138448293	138484458	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_138448434_138470138_138470237_138472118_138472232_138474729_138474781_138475848_138476014_138478184_138478447_138483937
transcript_53532.nnic	chr7	+	1420	4	NNC	ENSMUSG00000041769.14	novel	2081	9	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_1	319.381694319926	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCACTGCAGTCTTTATTT	NA	False	NA	20	True	AATAAA	-34	NA	138448320	138484786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_138448434_138475817_138476014_138478184_138478447_138483937
transcript_53533.known	chr7	-	1502	2	FSM	ENSMUSG00000041775.8	ENSMUST00000075667.5	1502	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCACAACCAGTCAACTTGT	NA	False	NA	28	True	NA	NA	NA	138447989	138437561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_138438760_138447685
transcript_53534.known	chr7	-	1756	6	FSM	ENSMUSG00000078566.9	ENSMUST00000106112.2	1756	6	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_2	24.8628236529965	123	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCGCTGTACTGGCTAGT	NA	False	NA	NA	False	AGTAAA	-19	NA	138511235	138492564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_138493690_138496108_138496259_138496338_138496446_138499724_138499807_138500409_138500558_138511091
transcript_53536.known	chr7	+	3552	14	FSM	ENSMUSG00000025478.16	ENSMUST00000026551.15	3552	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	3.36181128975572	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGGCTGGCTGCTGTGC	NA	False	NA	NA	False	NA	NA	NA	138665916	138682620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_138666078_138669425_138669515_138670074_138670260_138671777_138671943_138673521_138673584_138673676_138673758_138674309_138674379_138674772_138674894_138676083_138676241_138676582_138676725_138677737_138677909_138678385_138678566_138679655_138679822_138680817
transcript_53538.known	chr7	+	744	4	FSM	ENSMUSG00000015980.15	ENSMUST00000126213.8	744	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.55902608401044	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCAAACTGTTCTCTTCT	NA	False	NA	NA	False	ATTAAA	-19	NA	138813858	138822887	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_138814008_138816785_138816905_138818491_138818616_138822535
transcript_53539.nnic	chr7	+	742	4	NNC	ENSMUSG00000015980.15	novel	527	3	NA	NA	-345	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	4.02768199119819	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCAAACTGTTCTCTTCTG	NA	False	NA	NA	False	ATTAAA	-20	NA	138815463	138822888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_138815610_138816785_138816905_138818491_138818616_138822535
transcript_5354.known	chr10	+	2029	19	FSM	ENSMUSG00000015889.9	ENSMUST00000016033.9	2029	19	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_6	42.1416262935671	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTAAAGTGTCATTTTTG	NA	False	NA	21	True	AATACA	-20	NA	93289272	93320736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318111_93318195_93318823_93318929_93320524
transcript_53540.known	chr7	-	1907	4	FSM	ENSMUSG00000041309.18	ENSMUST00000097974.9	1907	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	33.9803864996658	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAGGCTCCGCAGGCGCCTT	NA	False	NA	-9	True	AATAAA	-20	NA	139162713	139159291	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_139159538_139160780_139161605_139161796_139161970_139162049
transcript_53541.known	chr7	+	1227	2	FSM	ENSMUSG00000047751.10	ENSMUST00000168457.3	1227	2	0	0	0	0	multi-exon	FALSE	canonical	3	805	junction_1	0	836	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCTGTGAATGAATTCGGAC	NA	False	NA	NA	False	AATAAA	-20	NA	139523701	139525025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_139524343_139524439
transcript_53544.known	chr7	-	2960	18	FSM	ENSMUSG00000025474.10	ENSMUST00000026547.9	2960	18	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_17	73.93539684464	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTTGTGCATTATTACTG	NA	False	NA	NA	False	NA	NA	NA	139616179	139575908	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616008
transcript_53545.known	chr7	-	3060	18	FSM	ENSMUSG00000025474.10	ENSMUST00000211638.2	3060	18	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_17	64.0289186395126	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTCCTGCGCAATGAGCT	NA	False	NA	NA	False	NA	NA	NA	139616582	139575960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616259
transcript_53549.known	chr7	-	3341	17	FSM	ENSMUSG00000025474.10	ENSMUST00000209930.2	3341	17	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_16	76.1033169037329	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTTTGAGTTTCTGTCTTG	NA	False	NA	NA	False	NA	NA	NA	139616242	139575880	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_139576080_139576694_139576859_139577884_139578014_139578681_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616008
transcript_53552.known	chr7	-	2610	15	FSM	ENSMUSG00000025474.10	ENSMUST00000211186.2	2610	15	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_14	66.201801874485	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTCGAGCAGTTGTGCAAA	NA	False	NA	NA	False	ATTAAA	-14	NA	139616303	139578440	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_139578826_139579139_139579261_139580927_139581057_139581338_139581512_139584711_139584893_139585182_139585364_139585927_139586074_139586764_139586955_139587339_139587540_139587799_139588008_139609739_139609900_139610923_139611101_139612031_139612161_139613525_139613712_139616259
transcript_53556.nnic	chr7	+	1212	7	NNC	ENSMUSG00000025470.12	novel	1076	6	NA	NA	-8	-1	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_5	157.078182939438	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATCTGTTCTTCTTCAT	NA	False	NA	18	True	AATAAA	-15	NA	139616295	139620514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238_139619359_139619702_139619811_139620155
transcript_53558.nnic	chr7	+	1046	6	NNC	ENSMUSG00000025470.12	novel	1076	6	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_4	120.382058463876	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATCTGTTCTTCTTCATG	NA	False	NA	19	True	AATAAA	-16	NA	139616295	139620515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617495_139619238_139619359_139620155
transcript_53559.known	chr7	+	1076	6	FSM	ENSMUSG00000025470.12	ENSMUST00000168194.3	1076	6	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	28.032837887021	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATCTGTTCTTCTTCATG	NA	False	NA	19	True	AATAAA	-16	NA	139616324	139620515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238_139619359_139620155
transcript_5356.nic	chr10	+	2012	18	NIC	ENSMUSG00000015889.9	novel	2029	19	NA	NA	-65	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_16	100.405509988178	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAAGTGTCATTTTTGG	NA	False	NA	22	True	AATACA	-21	NA	93289207	93320737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_93289531_93295678_93295810_93297171_93297293_93300306_93300376_93301810_93301916_93302973_93303027_93304617_93304691_93304909_93305051_93306661_93306686_93307157_93307229_93307715_93307828_93308760_93308906_93310337_93310442_93310779_93310851_93314308_93314364_93316552_93316649_93318823_93318929_93320524
transcript_53560.nnic	chr7	+	1149	6	NNC	ENSMUSG00000025470.12	novel	1076	6	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_5	132.693029206511	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCATCTGTTCTTCTTC	NA	False	NA	16	True	AATAAA	-13	NA	139616295	139620512	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238_139619406_139620155
transcript_53563.known	chr7	+	1757	5	FSM	ENSMUSG00000025470.12	ENSMUST00000210882.2	1757	5	0	0	0	0	multi-exon	FALSE	canonical	3	304	junction_1	31.3318926973779	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATCTGTTCTTCTTCATG	NA	False	NA	19	True	AATAAA	-16	NA	139616440	139620515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_139616520_139616732_139616807_139617132_139617335_139617428_139617554_139619238
transcript_53565.nnic	chr7	+	1013	5	NIC	ENSMUSG00000025470.12	novel	1076	6	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	2	11	junction_1	147.438758472798	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCATCTGTTCTTCTTCATG	NA	False	NA	19	True	AATAAA	-16	NA	139616313	139620515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_139616520_139617132_139617335_139617428_139617554_139619238_139619359_139620155
transcript_53566.nic	chr7	-	858	2	ISM	ENSMUSG00000025468.16	ENSMUST00000211044.2	1029	6	11205	6	11205	0	3prime_fragment	FALSE	canonical	3	34	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATCTGGGTCGTGGTTTCTC	9244	False	NA	-7	True	AGTAAA	-11	NA	139650935	139649799	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_139649947_139650224
transcript_5357.known	chr10	+	540	5	FSM	ENSMUSG00000015889.9	ENSMUST00000216931.2	540	5	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	198.438120077771	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAAGTGTCATTTTTGG	736	False	NA	22	True	AATACA	-21	NA	93310779	93320737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_93310851_93314308_93314364_93316552_93316649_93318823_93318929_93320524
transcript_53570.known	chr7	-	536	6	FSM	ENSMUSG00000025466.20	ENSMUST00000142105.8	536	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	173.251262621662	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1536	False	NA	0	True	NA	NA	NA	139682289	139679382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_139679536_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
transcript_53571.nic	chr7	-	767	6	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	-45	0	combination_of_known_junctions	FALSE	canonical	3	140	junction_5	128.971934931597	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1901	False	NA	0	True	NA	NA	NA	139681924	139679382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681707
transcript_53572.nnic	chr7	-	932	6	NNC	ENSMUSG00000025466.20	novel	685	6	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_5	171.429752376885	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1521	False	NA	0	True	NA	NA	NA	139682304	139679382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681922
transcript_53573.nic	chr7	-	835	6	NIC	ENSMUSG00000025466.20	novel	685	6	NA	NA	10	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_5	162.288138814887	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1547	False	NA	0	True	NA	NA	NA	139682278	139679382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139681993
transcript_53575.nnic	chr7	-	686	6	NNC	ENSMUSG00000025466.20	novel	685	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_5	177.394926646734	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1509	False	NA	0	True	NA	NA	NA	139682316	139679382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682180
transcript_53576.known	chr7	-	685	6	FSM	ENSMUSG00000025466.20	ENSMUST00000026539.14	685	6	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_5	86.8506764510214	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1471	False	NA	0	True	NA	NA	NA	139682354	139679382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_139679620_139679791_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
transcript_53579.known	chr7	-	1685	6	FSM	ENSMUSG00000025466.20	ENSMUST00000148716.8	1685	6	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	178.471286205933	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACCAGCATCTGCAGGTC	1506	False	NA	NA	False	AATAAA	-16	NA	139682319	139678423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_139679620_139679715_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
transcript_5358.known	chr10	+	5319	20	FSM	ENSMUSG00000020017.15	ENSMUST00000129421.8	5319	20	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	3.06530942706548	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGCGTGTGGTTTACTTT	NA	False	NA	NA	False	AATAAA	-31	NA	93324629	93355166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_93325240_93325735_93325797_93325901_93325930_93326608_93326684_93326776_93326850_93326960_93327028_93327671_93327710_93328314_93328441_93330472_93330613_93332444_93332493_93333336_93333485_93334620_93334717_93334817_93334877_93336478_93336560_93339123_93339190_93339265_93339432_93343276_93343412_93349895_93350005_93350120_93350191_93352043
transcript_53580.known	chr7	+	620	5	FSM	ENSMUSG00000025467.9	ENSMUST00000026540.9	620	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	1.08972473588517	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAATGCGTGTCTTTAAG	NA	False	NA	NA	False	AATAAA	-18	NA	139673307	139677113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_139673382_139674944_139675012_139676062_139676116_139676586_139676694_139676794
transcript_53584.nic	chr7	-	857	5	ISM	ENSMUSG00000025466.20	ENSMUST00000120034.8	680	6	-38	2700	0	0	5prime_fragment	FALSE	canonical	3	247	junction_4	96.9278081873308	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTCTTGTGGTGAGTTCC	1471	False	NA	0	True	NA	NA	NA	139682354	139679382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_-_139679866_139681002_139681102_139681244_139681316_139681513_139681583_139682219
transcript_53587.known	chr7	-	408	3	FSM	ENSMUSG00000025466.20	ENSMUST00000155777.8	408	3	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_2	118	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTGACAAGGAGAAGGGCCTG	1506	False	NA	NA	False	NA	NA	NA	139682319	139681076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_139681316_139681513_139681583_139682219
transcript_53593.known	chr7	-	1557	8	FSM	ENSMUSG00000025465.14	ENSMUST00000026538.13	1557	8	0	0	0	0	multi-exon	FALSE	canonical	3	1613	junction_2	95.2071854602651	1397	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTGTGTGTTTTTAACT	NA	False	NA	-1	True	NA	NA	NA	139696389	139685622	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_139686291_139687996_139688065_139689899_139690020_139690451_139690557_139691608_139691709_139692331_139692460_139692848_139693047_139696219
transcript_53595.known	chr7	+	4655	7	FSM	ENSMUSG00000025464.16	ENSMUST00000026537.13	4655	7	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_2	25.7552583627758	176	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAAATATAAATAAATG	NA	False	NA	NA	False	NA	NA	NA	139705569	139717137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_139705796_139706238_139706729_139707420_139707621_139708930_139709184_139711559_139711673_139712293_139712452_139713922
transcript_53610.known	chr7	-	3128	1	FSM	ENSMUSG00000025465.14	ENSMUST00000211120.2	3128	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	139696335	139693207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_139693200_139696300
transcript_53613.known	chr7	+	1595	11	FSM	ENSMUSG00000039018.16	ENSMUST00000036977.9	1595	11	0	0	0	0	multi-exon	FALSE	canonical	3	445	junction_3	26.942345851837	378	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGCGTTTTCATTGTGCAC	NA	False	NA	NA	False	NA	NA	NA	139717476	139730699	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_139717687_139718231_139718297_139720108_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725910_139725973_139726723_139726821_139727165_139727248_139729660_139729774_139730067
transcript_53618.nnic	chr7	+	1363	10	NIC	ENSMUSG00000039018.16	novel	1595	11	NA	NA	-21	168	combination_of_known_splicesites	FALSE	canonical	3	19	junction_8	147.717448002748	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTCTCTGGCTTCTCTTA	NA	False	NA	30	True	AATAAA	-31	NA	139717455	139730528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_139717687_139718231_139718297_139720108_139720214_139723650_139723732_139724253_139724311_139724542_139724634_139725910_139725973_139726723_139726821_139729660_139729774_139730067
transcript_53621.nnic	chr7	+	579	3	NIC	ENSMUSG00000025461.12	novel	3621	13	NA	NA	3641	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAGTTCAATTGTCAGTCTG	8482	False	NA	NA	False	ATTAAA	-11	NA	139808496	139811049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_139808732_139810212_139810385_139810877
transcript_53623.known	chr7	-	1460	13	FSM	ENSMUSG00000025480.6	ENSMUST00000026553.6	1460	13	0	0	0	0	multi-exon	FALSE	canonical	3	141	junction_11	16.7779617355625	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTATATTGTGTGTG	NA	False	NA	0	True	AATAAA	-18	NA	140367765	140357141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360445_140360787_140360848_140361939_140362003_140367648
transcript_53624.nnic	chr7	-	1436	13	NNC	ENSMUSG00000025480.6	novel	1460	13	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_12	46.3269629913294	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTATATTGTGTGTG	NA	False	NA	0	True	AATAAA	-18	NA	140367795	140357141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360445_140360787_140360848_140361939_140362003_140367702
transcript_53625.nic	chr7	-	1409	12	NIC	ENSMUSG00000025480.6	novel	1460	13	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_11	47.3902385596844	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGTCTATATTGTGTGTG	NA	False	NA	0	True	AATAAA	-18	NA	140367777	140357141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_140357646_140357829_140357912_140358047_140358159_140358221_140358346_140358422_140358490_140358977_140359042_140359249_140359340_140359506_140359562_140359795_140359844_140360369_140360445_140360787_140360848_140367648
transcript_5363.known	chr10	-	861	4	FSM	ENSMUSG00000020018.7	ENSMUST00000020203.7	861	4	0	0	0	0	multi-exon	FALSE	canonical	3	2132	junction_3	195.841772867792	1760	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTTTGTTCACTTGAAAG	NA	False	NA	NA	False	GATAAA	-36	NA	93425568	93418890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_93419393_93419891_93419957_93423859_93423986_93425400
transcript_53630.known	chr7	+	1989	13	FSM	ENSMUSG00000025487.16	ENSMUST00000026560.14	1989	13	0	0	0	0	multi-exon	FALSE	canonical	3	1065	junction_10	109.792987025584	1147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTTGGTGCTTCTGTTCTT	NA	False	NA	28	True	AATAAA	-16	NA	140461880	140478555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329_140477411_140477520_140477638_140478105
transcript_53636.known	chr7	+	2577	11	FSM	ENSMUSG00000025485.14	ENSMUST00000210708.2	2577	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	77.5539167289441	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGGCAGATGGGGATTCTG	NA	False	NA	NA	False	AAGAAA	-36	NA	140437363	140443402	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140437468_140437757_140437806_140437894_140438186_140438279_140438486_140438775_140438868_140439351_140439503_140440789_140440886_140440985_140441131_140441208_140441354_140441752_140441873_140442223
transcript_53638.known	chr7	+	1391	11	FSM	ENSMUSG00000025487.16	ENSMUST00000151644.8	1391	11	0	0	0	0	multi-exon	FALSE	canonical	3	1065	junction_10	119.9970416302	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCCTGAAATTGCTGCTCC	NA	False	NA	NA	False	NA	NA	NA	140462326	140477825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931_140467019_140469217_140469390_140470244_140470325_140470407_140470534_140474393_140474457_140477329
transcript_5364.known	chr10	+	1060	1	FSM	ENSMUSG00000090610.4	ENSMUST00000170703.4	1060	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCGGAATTGGAGAGGCTG	NA	False	NA	NA	False	NA	NA	NA	93614521	93615581	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_93614500_93615600
transcript_53641.known	chr7	+	3406	10	FSM	ENSMUSG00000025485.14	ENSMUST00000026558.7	3406	10	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_2	23.6648408268052	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATCAACATGCTAGATTGCC	NA	False	NA	NA	False	AAGAAA	-31	NA	140436869	140443643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140437468_140437757_140437806_140437894_140438486_140438775_140438868_140439351_140439503_140440789_140440886_140440985_140441131_140441208_140441354_140441752_140441873_140442223
transcript_53653.nic	chr7	-	1416	7	NIC	ENSMUSG00000025486.18	novel	1416	7	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	70	junction_6	62.3475919520732	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	False	NA	-14	True	AATAAA	-14	NA	140461790	140443582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458051_140461675
transcript_53654.known	chr7	-	1416	7	FSM	ENSMUSG00000025486.18	ENSMUST00000106048.10	1416	7	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	42.0135560133737	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	False	NA	-14	True	AATAAA	-14	NA	140461782	140443582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458059_140461675
transcript_53655.known	chr7	-	1461	7	FSM	ENSMUSG00000025486.18	ENSMUST00000026559.14	1461	7	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_6	79.4187215543875	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGCATCCTGTCTCTTTG	NA	False	NA	-14	True	AATAAA	-14	NA	140462222	140443582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140443997_140444887_140445098_140449401_140449564_140456266_140456368_140457562_140457796_140457869_140458059_140462070
transcript_53656.known	chr7	+	599	6	FSM	ENSMUSG00000025487.16	ENSMUST00000140411.8	599	6	0	0	0	0	multi-exon	FALSE	canonical	3	1147	junction_5	133.449016481951	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTTGCTTGGTTTGGTT	NA	False	NA	NA	False	NA	NA	NA	140462341	140467178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140462480_140463412_140463492_140466300_140466336_140466423_140466480_140466714_140466759_140466931
transcript_53662.known	chr7	+	719	4	FSM	ENSMUSG00000025481.13	ENSMUST00000106050.8	719	4	0	0	0	0	multi-exon	FALSE	canonical	3	242	junction_1	5.43650214343336	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGAAGATATTCTAGCTGCC	NA	False	NA	-52	True	NA	NA	NA	140414930	140417800	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140415172_140415524_140415665_140416659_140416796_140417598
transcript_53663.known	chr7	+	688	4	FSM	ENSMUSG00000025481.13	ENSMUST00000211372.2	688	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	116.448367194316	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAATCTGAACCTATCATT	NA	False	NA	27	True	AATAAA	-17	NA	140415184	140417879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140415316_140415524_140415665_140416659_140416796_140417598
transcript_53664.known	chr7	+	797	4	FSM	ENSMUSG00000025487.16	ENSMUST00000146875.8	797	4	0	0	0	0	multi-exon	FALSE	canonical	3	1147	junction_3	64.8553947040816	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGCCAAAGCACTCTCGTA	NA	False	NA	NA	False	NA	NA	NA	140462379	140467091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140462480_140463412_140463492_140466300_140466759_140466931
transcript_53666.known	chr7	-	1272	4	FSM	ENSMUSG00000025486.18	ENSMUST00000210974.2	1272	4	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_3	50.4050262044041	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAAATAAAATGAATCTCTC	NA	False	NA	NA	False	NA	NA	NA	140461740	140455582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140456368_140457562_140457796_140457869_140458059_140461675
transcript_53668.known	chr7	-	3851	3	FSM	ENSMUSG00000060314.14	ENSMUST00000106052.2	3851	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	4	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTCACATTGGAGTTTTTT	NA	False	NA	NA	False	NA	NA	NA	140402045	140389601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140393228_140398500_140398628_140401947
transcript_5367.known	chr10	-	1876	11	FSM	ENSMUSG00000036112.16	ENSMUST00000181091.8	1876	11	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_8	660.841047453924	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGATACATTTTAATGT	NA	False	NA	-17	True	AATAAA	-15	NA	93725637	93696790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715436_93715934_93716001_93722855_93722964_93725399
transcript_53670.known	chr7	-	1882	1	FSM	ENSMUSG00000025484.10	ENSMUST00000210157.2	1882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ACAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	140436183	140434301	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140434300_140436200
transcript_53671.known	chr7	+	890	3	FSM	ENSMUSG00000025481.13	ENSMUST00000026554.11	890	3	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	2	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCAATCTGAACCTATCATT	NA	False	NA	27	True	AATAAA	-17	NA	140415191	140417879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140415665_140416659_140416796_140417598
transcript_53672.known	chr7	-	354	4	FSM	ENSMUSG00000025484.10	ENSMUST00000211590.2	354	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	52.0917993119412	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACACCTGGCATCCTGGTT	NA	False	NA	NA	False	NA	NA	NA	140436159	140434337	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140434537_140434677_140434715_140434986_140435079_140436133
transcript_53673.known	chr7	-	360	2	FSM	ENSMUSG00000025488.10	ENSMUST00000026561.10	360	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTACTGCTCGTGCAGATTCT	NA	False	NA	NA	False	ATTAAA	-14	NA	140480359	140478857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140479003_140480144
transcript_53674.known	chr7	+	2981	14	FSM	ENSMUSG00000062031.14	ENSMUST00000079403.11	2981	14	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	11.3032434995212	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGTGATGGATTCATG	NA	False	NA	15	True	ATTAAA	-27	NA	140521493	140527577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140521557_140522197_140522479_140522898_140523110_140523189_140523626_140524557_140524678_140524863_140524996_140525150_140525263_140525367_140525441_140525538_140525676_140525792_140525927_140526019_140526116_140526243_140526342_140526414_140526627_140526701
transcript_53675.known	chr7	+	3145	13	FSM	ENSMUSG00000062031.14	ENSMUST00000169736.8	3145	13	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	11.7505910016854	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTCAGAGTGTGTGATGGA	NA	False	NA	9	True	ATTAAA	-21	NA	140521478	140527571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140521557_140522197_140522479_140522898_140523110_140523189_140523626_140524557_140524678_140524863_140525263_140525367_140525441_140525538_140525676_140525792_140525927_140526019_140526116_140526243_140526342_140526414_140526627_140526701
transcript_5368.known	chr10	-	4424	11	FSM	ENSMUSG00000036112.16	ENSMUST00000047910.15	4424	11	0	0	0	0	multi-exon	FALSE	canonical	3	2022	junction_3	150.158882521148	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTGGAGTGAAAGACCAGT	NA	False	NA	-14	True	AATAAA	-23	NA	93725676	93694350	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715505_93715934_93716001_93722855_93722964_93725399
transcript_53680.known	chr7	-	655	2	FSM	ENSMUSG00000060591.10	ENSMUST00000081649.10	655	2	0	0	0	0	multi-exon	FALSE	canonical	3	9574	junction_1	0	3972	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGACTCACTGTTCTCT	NA	False	NA	-12	True	AATAAA	-22	NA	140535900	140534749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140535087_140535582
transcript_53681.known	chr7	+	882	3	FSM	ENSMUSG00000025491.15	ENSMUST00000106042.9	882	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	569	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTAGTCCTGTGTTGAGT	NA	False	NA	24	True	AATAAA	-28	NA	140547133	140549738	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140547480_140548152_140548352_140549401
transcript_53682.known	chr7	+	560	3	FSM	ENSMUSG00000025491.15	ENSMUST00000106040.8	560	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	567.5	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTAGTCCTGTGTTGAGT	NA	False	NA	24	True	AATAAA	-28	NA	140547940	140549738	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140547965_140548152_140548352_140549401
transcript_53683.nnic	chr7	+	619	3	NNC	ENSMUSG00000025491.15	novel	560	3	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	552	142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTAGTCCTGTGTTGAGT	NA	False	NA	24	True	AATAAA	-28	NA	140547953	140549738	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_140548037_140548152_140548352_140549401
transcript_53684.known	chr7	+	736	2	FSM	ENSMUSG00000025491.15	ENSMUST00000026564.9	736	2	0	0	0	0	multi-exon	FALSE	canonical	3	1139	junction_1	0	687	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTAGTCCTGTGTTGAGT	NA	False	NA	24	True	AATAAA	-28	NA	140547952	140549738	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140548352_140549401
transcript_53685.known	chr7	-	678	2	FSM	ENSMUSG00000025492.7	ENSMUST00000026565.7	678	2	0	0	0	0	multi-exon	FALSE	canonical	3	1854	junction_1	0	1256	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGACTGCTTTTATTCCTC	NA	False	NA	2	True	AATAAA	-23	NA	140590683	140589498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140589803_140590309
transcript_53686.known	chr7	-	813	3	FSM	ENSMUSG00000059108.5	ENSMUST00000211330.2	813	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGGTGAGACTTCCTATC	NA	False	NA	NA	False	AATAAA	-17	NA	140597471	140595613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140596073_140596612_140596781_140597285
transcript_53687.known	chr7	+	3556	20	FSM	ENSMUSG00000055629.6	ENSMUST00000048002.7	3556	20	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_14	21.3235203654468	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTTCTGTGAGTGTTC	NA	False	NA	24	True	AATGAA	-25	NA	140641016	140652313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140641338_140643749_140643854_140644190_140644287_140644372_140644469_140644553_140644645_140644719_140644821_140644966_140645035_140645239_140645319_140646844_140646912_140647022_140647158_140647239_140647350_140647432_140647534_140647612_140647714_140647785_140648675_140650323_140650608_140650700_140650855_140650954_140651028_140651120_140651275_140651549_140651677_140651908
transcript_53689.nnic	chr7	+	1259	7	NNC	ENSMUSG00000055629.6	novel	476	3	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	76.3728063878469	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTTCTGTGAGTGTTC	NA	False	NA	24	True	AATGAA	-25	NA	140650162	140652313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_140650225_140650323_140650608_140650700_140650855_140650954_140651028_140651120_140651275_140651549_140651677_140651908
transcript_5369.known	chr10	-	1984	11	FSM	ENSMUSG00000036112.16	ENSMUST00000181217.8	1984	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	666.978530389097	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAGAGATACATTTTAATGT	NA	False	NA	-17	True	AATAAA	-15	NA	93725646	93696790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_93697465_93698238_93698355_93698791_93698896_93701268_93701366_93704728_93704824_93705978_93706161_93707349_93707512_93715401_93715535_93715934_93716001_93722855_93722964_93725399
transcript_53692.known	chr7	+	1425	7	FSM	ENSMUSG00000054065.13	ENSMUST00000160403.8	1425	7	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	7.83156008298049	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAGCCCCAGCTCCGTGTGT	614	False	NA	16	True	ATTAAA	-14	NA	140668058	140670420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140668315_140668393_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
transcript_53695.nic	chr7	+	1438	7	NIC	ENSMUSG00000054065.13	novel	2848	13	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	25.5255862921022	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCAGCTCCGTGTGTTTC	587	False	NA	19	True	ATTAAA	-17	NA	140668031	140670423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_140668298_140668393_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
transcript_53696.nnic	chr7	+	1429	7	NNC	ENSMUSG00000054065.13	novel	2848	13	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	24.8171087939125	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCCAGCTCCGTGTGTTTC	602	False	NA	19	True	ATTAAA	-17	NA	140668046	140670423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_140668304_140668393_140668565_140668651_140668838_140669157_140669312_140669481_140669675_140669768_140669857_140670043
transcript_53697.nnic	chr7	-	1835	11	NIC	ENSMUSG00000025494.9	novel	1990	10	NA	NA	-96	0	combination_of_known_splicesites	TRUE	canonical	1	3	junction_9	57.0807323008386	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676748	140671087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140675967_140676037_140676532
transcript_53699.nic	chr7	-	1835	10	NIC	ENSMUSG00000025494.9	novel	1990	10	NA	NA	-105	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_9	41.7703894176098	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676757	140671087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676472
transcript_537.known	chr1	+	5176	7	FSM	ENSMUSG00000026123.12	ENSMUST00000156687.8	5176	7	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	21.2733531808118	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	34889056	34913037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_34889145_34900953_34900999_34902086_34902240_34902551_34902655_34903553_34903594_34905221_34905312_34908380
transcript_53700.nnic	chr7	-	1818	10	NIC	ENSMUSG00000025494.9	novel	1990	10	NA	NA	-148	0	combination_of_known_splicesites	FALSE	canonical	3	90	junction_9	19.9616917069288	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676800	140671087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676532
transcript_53701.known	chr7	-	1612	10	FSM	ENSMUSG00000025494.9	ENSMUST00000209294.2	1612	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_9	39.3474550920669	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCGGGCTTATTTCTGTC	NA	False	NA	-32	True	AATAAA	-15	NA	140680455	140671089	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140680391
transcript_53705.nnic	chr7	-	1687	9	NIC	ENSMUSG00000025494.9	novel	1990	10	NA	NA	-148	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_6	47.1566538253087	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676800	140671087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673639_140673839_140674694_140674859_140676532
transcript_53706.nnic	chr7	-	2119	9	NIC	ENSMUSG00000025494.9	novel	1897	9	NA	NA	-148	0	intron_retention	FALSE	canonical	3	90	junction_8	21.1527185014125	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140676800	140671087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140676532
transcript_53707.known	chr7	-	1897	9	FSM	ENSMUSG00000025494.9	ENSMUST00000210167.2	1897	9	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_8	41.6921380478382	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140680437	140671087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140674859_140680391
transcript_53711.known	chr7	-	1990	10	FSM	ENSMUSG00000025494.9	ENSMUST00000097958.3	1990	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	46.3395945676196	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGGGCTTATTTCTGTCTG	NA	False	NA	-30	True	AATAAA	-17	NA	140680459	140671087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140671415_140671715_140671906_140672067_140672219_140672293_140672397_140672498_140672643_140672890_140673032_140673112_140673244_140673639_140673839_140674694_140675231_140680391
transcript_53712.known	chr7	-	3019	24	FSM	ENSMUSG00000054662.9	ENSMUST00000067836.9	3019	24	0	0	0	0	multi-exon	FALSE	canonical	3	82	junction_10	30.0592986723404	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATGTAGATCCAGTTTCTA	NA	False	NA	-8	True	AATAAA	-28	NA	140697719	140681124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140681841_140681931_140682045_140682170_140682265_140682337_140682440_140682999_140683148_140683904_140684058_140684154_140684298_140684395_140684494_140684581_140684640_140686675_140686788_140686963_140687001_140687079_140687233_140687308_140687414_140687513_140687597_140687709_140687771_140687958_140688056_140688163_140688299_140688530_140688605_140688697_140688757_140688853_140688901_140690288_140690426_140690543_140690670_140691067_140691143_140697626
transcript_53723.known	chr7	+	3624	12	FSM	ENSMUSG00000025495.16	ENSMUST00000026568.10	3624	12	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_1	17.146910185967	244	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACAACAAAAGTTGGTTG	6810	False	NA	NA	False	NA	NA	NA	140711198	140737519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734723_140734910_140735246
transcript_53724.nic	chr7	+	2049	12	NIC	ENSMUSG00000025495.16	novel	3624	12	NA	NA	-4	552	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	88.9139243899021	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATAGCCTCTGGCTGCCCTT	6806	False	NA	11	True	AATAAA	-16	NA	140711194	140736067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734850_140734910_140735246
transcript_53726.nnic	chr7	+	2079	12	NNC	ENSMUSG00000025495.16	novel	408	3	NA	NA	2040	552	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_1	84.6823915463925	105	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATAGCCTCTGGCTGCCCTT	NA	False	NA	11	True	AATAAA	-16	NA	140714505	140736067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_140714645_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734723_140734910_140735246
transcript_53734.nnic	chr7	+	2025	10	NIC	ENSMUSG00000025495.16	novel	3624	12	NA	NA	-4	552	combination_of_known_splicesites	FALSE	canonical	1	4	junction_2	99.4836049523789	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATAGCCTCTGGCTGCCCTT	6806	False	NA	11	True	AATAAA	-16	NA	140711194	140736067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_140711431_140715221_140715324_140731562_140731698_140732104_140732156_140732687_140732802_140732887_140733007_140734265_140734381_140734469_140734616_140734723_140734910_140735246
transcript_53737.known	chr7	+	655	4	FSM	ENSMUSG00000025495.16	ENSMUST00000173721.8	655	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	147.981980885061	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTTAAAAAATAAACACTT	6868	False	NA	NA	False	TATAAA	-30	NA	140711256	140723555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140711431_140715221_140715324_140723005_140723089_140723259
transcript_53738.known	chr7	+	2119	8	FSM	ENSMUSG00000025495.16	ENSMUST00000174706.8	2119	8	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_1	19.06701393528	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGGCTGCTGGCTCTCT	6825	False	NA	NA	False	AATAAA	-21	NA	140711213	140734236	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140711431_140715221_140715324_140723005_140723089_140726993_140727062_140731562_140731698_140732104_140732156_140732687_140732802_140732887
transcript_53739.known	chr7	-	1658	10	FSM	ENSMUSG00000038650.16	ENSMUST00000210314.2	1658	10	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_9	176.376561249007	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAAGGTCCTTGTCGTTCTT	NA	False	NA	NA	False	ATTAAA	-16	NA	140748602	140740238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748486
transcript_53740.known	chr7	-	2091	10	FSM	ENSMUSG00000038650.16	ENSMUST00000106033.5	2091	10	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_9	110.454616120026	317	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGGTCCTTGTCGTTC	NA	False	NA	NA	False	ATTAAA	-14	NA	140749139	140740240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140748588
transcript_53741.known	chr7	-	1656	10	FSM	ENSMUSG00000038650.16	ENSMUST00000167493.9	1656	10	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_9	147.871899850621	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGGTCCTTGTCGTTC	7992	False	NA	NA	False	ATTAAA	-14	NA	140752770	140740240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140740479_140740562_140740734_140742336_140742508_140742764_140742936_140743020_140743192_140743266_140743438_140743920_140744092_140744416_140744588_140746595_140746701_140752654
transcript_53745.known	chr7	-	580	1	FSM	ENSMUSG00000110275.2	ENSMUST00000211731.2	580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1114	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATACTTGGCTGAACTGG	2385	False	NA	-83	True	GGGGCT	-31	NA	140758377	140757797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140757800_140758400
transcript_53746.known	chr7	-	2828	6	FSM	ENSMUSG00000025499.19	ENSMUST00000026572.11	2828	6	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_1	141.994366085419	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTATCTCTGGTTCTCCTG	NA	False	NA	NA	False	AATAAA	-19	NA	140773873	140769017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140771108_140771254_140771381_140772043_140772204_140772354_140772534_140772742_140772895_140773752
transcript_53747.known	chr7	-	2272	6	FSM	ENSMUSG00000025499.19	ENSMUST00000168550.8	2272	6	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	252.24797323269	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTTTAGCAGGCTGGGTC	NA	False	NA	NA	False	NA	NA	NA	140773917	140769846	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140771381_140771867_140771950_140772043_140772204_140772354_140772534_140772742_140772895_140773752
transcript_53748.known	chr7	-	1199	5	FSM	ENSMUSG00000025499.19	ENSMUST00000097957.11	1199	5	0	0	0	0	multi-exon	FALSE	canonical	3	437	junction_1	76.3392919799496	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTCTCTGGCTGGAAGTA	NA	False	NA	-2	True	AGTAAA	-18	NA	140773918	140770838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140771381_140772043_140772204_140772354_140772534_140772742_140772895_140773752
transcript_53750.known	chr7	+	2502	13	FSM	ENSMUSG00000038637.16	ENSMUST00000070458.11	2502	13	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	5.23609269080167	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCCTGCCTGGCCTGGCT	416	False	NA	10	True	AATAAA	-14	NA	140774088	140789962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140774531_140775820_140775892_140776894_140777083_140778186_140778275_140779691_140779753_140785375_140785473_140785548_140785750_140786247_140786432_140786860_140787023_140787098_140787164_140787399_140787537_140787743_140787884_140789296
transcript_53752.known	chr7	+	2197	13	FSM	ENSMUSG00000038637.16	ENSMUST00000047093.11	2197	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	6.88597608670453	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGCCTGCCTGGCCTGG	1318	False	NA	8	True	AATAAA	-12	NA	140774990	140789960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140775130_140775820_140775892_140776894_140777083_140778186_140778275_140779691_140779753_140785375_140785473_140785548_140785750_140786247_140786432_140786860_140787023_140787098_140787164_140787399_140787537_140787743_140787884_140789296
transcript_53756.known	chr7	+	1525	6	FSM	ENSMUSG00000038618.13	ENSMUST00000046890.12	1525	6	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_1	23.1395764870492	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	20	True	AATAAA	-17	NA	140795772	140798571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140795854_140796633_140796765_140796912_140797626_140797798_140797931_140798002_140798082_140798182
transcript_53757.nic	chr7	+	1525	6	NIC	ENSMUSG00000038618.13	novel	1525	6	NA	NA	-29	0	combination_of_known_junctions	TRUE	canonical	3	14	junction_2	127.53258407168	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	20	True	AATAAA	-17	NA	140795743	140798571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_140795854_140796633_140796765_140796941_140797626_140797798_140797931_140798002_140798082_140798182
transcript_53759.nic	chr7	+	1658	6	NIC	ENSMUSG00000038618.13	novel	1525	6	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_1	136.336935567732	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	20	True	AATAAA	-17	NA	140795810	140798571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_140796025_140796633_140796765_140796912_140797626_140797798_140797931_140798002_140798082_140798182
transcript_53760.nic	chr7	+	1521	6	NIC	ENSMUSG00000038618.13	novel	661	3	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_1	122.763186664407	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	20	True	AATAAA	-17	NA	140796095	140798571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_140796173_140796633_140796765_140796912_140797626_140797798_140797931_140798002_140798082_140798182
transcript_53762.known	chr7	+	1560	5	FSM	ENSMUSG00000038618.13	ENSMUST00000209500.2	1560	5	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_1	22.576259654779	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTTCAGTGTGTCCTGAG	NA	False	NA	17	True	AATAAA	-14	NA	140795806	140798568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140795854_140796633_140796765_140796912_140797626_140797798_140798082_140798182
transcript_53763.nnic	chr7	+	841	5	NIC	ENSMUSG00000038618.13	novel	1525	6	NA	NA	-29	0	combination_of_known_splicesites	FALSE	canonical	3	36	junction_2	126.772187407175	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	20	True	AATAAA	-17	NA	140795743	140798571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_140795854_140796633_140796765_140797798_140797931_140798002_140798082_140798182
transcript_53767.nic	chr7	+	1900	3	ISM	ENSMUSG00000038618.13	ENSMUST00000046890.12	1525	6	-29	0	-29	0	intron_retention	FALSE	canonical	3	288	junction_1	28.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTGTGTCCTGAGGTT	NA	False	NA	20	True	AATAAA	-17	NA	140795743	140798571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_140795854_140796633_140796765_140796912
transcript_53768.known	chr7	+	5271	17	FSM	ENSMUSG00000038611.18	ENSMUST00000155123.8	5271	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	62.4608627462029	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAACTTTTCTATGGACTG	NA	False	NA	76	True	NA	NA	NA	140808696	140842655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140808805_140811139_140811256_140812331_140812455_140817409_140817616_140820797_140820882_140823690_140823810_140827133_140827310_140828292_140828423_140834776_140834905_140836410_140836593_140836715_140836836_140837256_140837412_140837944_140840621_140840872_140841028_140841125_140841456_140841688_140841818_140842321
transcript_53769.known	chr7	-	507	4	FSM	ENSMUSG00000038580.14	ENSMUST00000167790.3	507	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2.94392028877595	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACCCTGGTCTTTTAGCTC	NA	False	NA	NA	False	AATAAA	-11	NA	140859044	140858250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140858435_140858530_140858636_140858745_140858848_140858928
transcript_53770.known	chr7	-	617	3	FSM	ENSMUSG00000038580.14	ENSMUST00000210928.2	617	3	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTTTTAGCTCATGGTGTG	NA	False	NA	NA	False	AATAAA	-19	NA	140859036	140858242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140858435_140858530_140858848_140858928
transcript_53771.known	chr7	-	534	4	FSM	ENSMUSG00000038580.14	ENSMUST00000046156.13	534	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.54606056566195	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTTTAGCTCATGGTGT	NA	False	NA	NA	False	AATAAA	-18	NA	140859046	140858243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140858453_140858530_140858636_140858745_140858848_140858928
transcript_53772.known	chr7	+	1800	6	FSM	ENSMUSG00000025505.17	ENSMUST00000026578.14	1800	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.89736659610103	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTTTGTCTTCATTATAA	969	False	NA	NA	False	AATAAA	-19	NA	140908042	140917069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140908180_140911330_140911475_140912822_140912843_140913550_140913645_140913923_140914017_140915757
transcript_53774.known	chr7	+	669	3	FSM	ENSMUSG00000025505.17	ENSMUST00000128649.2	669	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTGCTGAGGACACTGGGT	999	False	NA	NA	False	AATAAA	-23	NA	140908072	140913240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140908180_140911330_140911475_140912822
transcript_53775.known	chr7	+	3191	21	FSM	ENSMUSG00000025504.15	ENSMUST00000026577.13	3191	21	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_6	10.2434125173206	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGATATCTGTTTCTTGG	NA	False	NA	7	True	AATAAA	-19	NA	140918792	140942933	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140918972_140921805_140921888_140921967_140922024_140922838_140922904_140934858_140935021_140935557_140935708_140935782_140935863_140936004_140936154_140936237_140936309_140936449_140936577_140936959_140937049_140937154_140937230_140937455_140937605_140937698_140937832_140938117_140938231_140940234_140940341_140940914_140941035_140941293_140941367_140941492_140941674_140941760_140941894_140942035
transcript_53776.known	chr7	+	3341	20	FSM	ENSMUSG00000025504.15	ENSMUST00000140025.8	3341	20	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_6	10.3329610036278	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGATATCTGTTTCTTGG	NA	False	NA	7	True	AATAAA	-19	NA	140918868	140942933	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140918972_140921805_140921888_140921967_140922024_140922838_140922904_140934858_140935021_140935557_140935708_140935782_140935863_140936004_140936154_140936237_140936309_140936449_140936577_140936959_140937049_140937154_140937605_140937698_140937832_140938117_140938231_140940234_140940341_140940914_140941035_140941293_140941367_140941492_140941674_140941760_140941894_140942035
transcript_53777.known	chr7	+	1362	9	FSM	ENSMUSG00000025503.6	ENSMUST00000211654.2	1362	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1588.07752782256	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCTGTTTCATTTCACCG	3840	False	NA	16	True	ATTAAA	-15	NA	140972111	140982879	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140972232_140975522_140975658_140975961_140976086_140978407_140978516_140980200_140980333_140981493_140981670_140981784_140981983_140982096_140982243_140982656
transcript_53780.known	chr7	+	1229	8	FSM	ENSMUSG00000025503.6	ENSMUST00000026576.5	1229	8	0	0	0	0	multi-exon	FALSE	canonical	3	3267	junction_3	222.11993450864	2316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTTCATTTCACCGTC	3840	False	NA	18	True	ATTAAA	-17	NA	140972111	140982881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_140972232_140975961_140976086_140978407_140978516_140980200_140980333_140981493_140981670_140981784_140981983_140982096_140982243_140982656
transcript_53785.known	chr7	-	1898	8	FSM	ENSMUSG00000051007.16	ENSMUST00000106008.3	1898	8	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_4	16.4564980032391	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTACACATTGGTTGTT	5437	False	NA	NA	False	NA	NA	NA	140994049	140987706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140988878_140989001_140989114_140989243_140989338_140989758_140989854_140990690_140990799_140990898_140991005_140991710_140991788_140993914
transcript_53790.known	chr7	-	2348	7	FSM	ENSMUSG00000051007.16	ENSMUST00000156353.8	2348	7	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_4	10.4721853816033	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTATGTGAGTTCTTGCGT	5483	False	NA	48	True	NA	NA	NA	140994003	140988047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_140988878_140989001_140989114_140989243_140989338_140989758_140990799_140990898_140991005_140991710_140991788_140993914
transcript_53791.known	chr7	-	2546	10	FSM	ENSMUSG00000019082.19	ENSMUST00000106007.10	2546	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_9	39.7436228287703	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGCTTTAAGAGTCTGT	3505	False	NA	-19	True	AATAAA	-18	NA	141014507	141009661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141011827_141011933_141012053_141012575_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141014443
transcript_53792.known	chr7	-	2811	10	FSM	ENSMUSG00000019082.19	ENSMUST00000019226.14	2811	10	0	0	0	0	multi-exon	TRUE	canonical	3	72	junction_9	20.9708792800344	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTAAGAGTCTGTGCTTG	207	False	NA	-14	True	AATAAA	-23	NA	141017805	141009656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_141011172_141011262_141011339_141011414_141011570_141011651_141011827_141011933_141012053_141012575_141012667_141013493_141013550_141013812_141013939_141014068_141014243_141017481
transcript_53794.nnic	chr7	+	750	5	NNC	ENSMUSG00000025508.14	novel	964	5	NA	NA	-40	0	at_least_one_novel_splicesite	FALSE	canonical	3	213	junction_1	6078.86463494623	364	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCTTTAAACATTTTGT	2077	False	NA	27	True	AATAAA	-20	NA	141027242	141031263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_+_141027602_141027820_141027945_141028638_141028688_141030916_141031016_141031144
transcript_53796.known	chr7	+	421	5	FSM	ENSMUSG00000025508.14	ENSMUST00000106004.8	421	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	6154.22628666675	202	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCTTTAAACATTTTGT	2459	False	NA	27	True	AATAAA	-20	NA	141027624	141031263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_141027655_141027820_141027945_141028638_141028688_141030916_141031016_141031144
transcript_53797.known	chr7	+	449	4	FSM	ENSMUSG00000025508.14	ENSMUST00000106003.2	449	4	0	0	0	0	multi-exon	FALSE	canonical	3	11523	junction_3	1651.02843370091	236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCCTTTAAACATTTTGT	2597	False	NA	27	True	AATAAA	-20	NA	141027762	141031263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_141027945_141028638_141028688_141030916_141031016_141031144
transcript_53798.known	chr7	+	2625	9	FSM	ENSMUSG00000025509.16	ENSMUST00000164016.8	2625	9	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_3	8.3132048573339	50	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTATCCTGTGCTGTGT	9945	False	NA	NA	False	NA	NA	NA	141035110	141040656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_141035387_141037185_141037419_141037504_141037571_141037917_141038128_141038342_141038404_141038504_141038673_141038757_141038891_141039079_141039203_141039301
transcript_53804.known	chr7	+	1708	8	FSM	ENSMUSG00000025510.15	ENSMUST00000177840.9	1708	8	0	0	0	0	multi-exon	FALSE	canonical	3	214	junction_1	29.0537854500854	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTATAAGCACTCGAATC	NA	False	NA	-2	True	NA	NA	NA	141047334	141051376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_141047380_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
transcript_53807.known	chr7	+	1865	8	FSM	ENSMUSG00000025510.15	ENSMUST00000106000.10	1865	8	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	68.1968938187848	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCGAATCAGCTTGCTGA	NA	False	NA	8	True	NA	NA	NA	141047305	141051386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_141047498_141048331_141048460_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
transcript_53810.known	chr7	+	1619	7	FSM	ENSMUSG00000025510.15	ENSMUST00000058746.7	1619	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	95.130465969402	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTCGAATCAGCTTGCTG	710	False	NA	7	True	NA	NA	NA	141048734	141051385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_141048810_141049167_141049259_141049378_141049571_141049849_141049925_141050033_141050139_141050222_141050382_141050463
transcript_53816.known	chr7	+	1698	10	FSM	ENSMUSG00000048200.13	ENSMUST00000053670.12	1698	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.58930587290297	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCTTGGCTCTTGTGTGTT	NA	False	NA	NA	False	AATAAA	-20	NA	141041006	141046526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_141041103_141043296_141043486_141043562_141043675_141044043_141044207_141044608_141044756_141044851_141044943_141045176_141045270_141045431_141045599_141045678_141045751_141045958
transcript_53817.nnic	chr7	-	490	3	NNC	ENSMUSG00000038489.9	novel	1650	2	NA	NA	-238	-1252	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	528	266	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTCCATGTCCATGTCT	7762	False	NA	-13	True	AGTAAA	-37	NA	141055283	141053024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr7_-_141053318_141054940_141055056_141055201
transcript_53818.known	chr7	-	1650	2	FSM	ENSMUSG00000038489.9	ENSMUST00000043870.9	1650	2	0	0	0	0	multi-exon	FALSE	canonical	3	1072	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	TAAAAAAAAAAAAAAAAGAA	8000	False	NA	NA	False	NA	NA	NA	141055045	141051772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_141053318_141054940
transcript_53821.known	chr7	-	4222	13	FSM	ENSMUSG00000025512.16	ENSMUST00000166082.8	4222	13	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_12	22.800310670398	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATAGTCTGGTGTCTGCTGCC	NA	False	NA	NA	False	NA	NA	NA	141119770	141073049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_141076060_141076283_141076327_141076513_141076595_141093646_141093803_141095314_141095417_141102521_141102615_141106344_141106407_141107511_141107619_141108375_141108421_141109481_141109615_141110062_141110213_141112731_141112887_141119685
transcript_53828.known	chr7	+	1466	8	FSM	ENSMUSG00000025511.16	ENSMUST00000026585.14	1466	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	68.6787850082111	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGGAAGTTCTTTCATTT	3491	False	NA	45	True	NA	NA	NA	141055152	141073340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_141055411_141062399_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
transcript_5383.known	chr10	-	931	3	FSM	ENSMUSG00000036112.16	ENSMUST00000181104.2	931	3	0	0	0	0	multi-exon	FALSE	canonical	3	2075	junction_1	110	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAAGAATCATACCACAGCT	NA	False	NA	NA	False	NA	NA	NA	93725623	93715401	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_93716001_93722855_93722964_93725399
transcript_53834.known	chr7	+	1281	8	FSM	ENSMUSG00000025511.16	ENSMUST00000117634.2	1281	8	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	83.3289522657899	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCAACTGAGGAAGTTCTT	4651	False	NA	39	True	NA	NA	NA	141056312	141073334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_141056392_141062399_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
transcript_53837.known	chr7	+	1157	7	FSM	ENSMUSG00000025511.16	ENSMUST00000239217.2	1157	7	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_2	25.1241362482817	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTCACAGCCTCTGCTTCT	654	False	NA	NA	False	NA	NA	NA	141061976	141072866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_141062480_141069464_141069657_141070674_141070750_141071484_141071587_141071686_141071819_141071892_141071977_141072797
transcript_53839.known	chr7	+	4646	22	FSM	ENSMUSG00000002957.12	ENSMUST00000003038.12	4646	22	0	0	0	0	multi-exon	FALSE	canonical	3	504	junction_7	69.5768877620837	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGTGTGGTTTTTGTGG	9596	False	NA	28	True	AATAAA	-22	NA	141142085	141212924	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_141142340_141168198_141168268_141177385_141177529_141178614_141178809_141182145_141182276_141184821_141184924_141189719_141189829_141191248_141191397_141192541_141192711_141194111_141194250_141199363_141199547_141200384_141200483_141200704_141200937_141201027_141201202_141203530_141203695_141206020_141206104_141207806_141207897_141209102_141209227_141209971_141210089_141210197_141210268_141210349_141210485_141211204
transcript_5384.known	chr10	-	11138	12	FSM	ENSMUSG00000036099.17	ENSMUST00000119818.8	11138	12	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_7	12.5467719993354	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACTTGTGTGTGTCCCTTTT	3395	False	NA	NA	False	AATAAA	-18	NA	93871679	93797383	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_93806567_93809696_93809905_93810306_93810408_93816175_93816370_93820023_93820356_93826001_93826150_93829378_93829529_93832699_93832976_93836212_93836386_93839854_93839945_93842821_93842957_93871531
transcript_53841.known	chr7	+	1549	5	FSM	ENSMUSG00000002957.12	ENSMUST00000201320.2	1549	5	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_3	22.2190796389049	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TGAAAAAAAAAAAAAAAACA	9631	False	NA	NA	False	AATAGA	-36	NA	141142120	141183069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_141142340_141168198_141168268_141177385_141177529_141178614_141178809_141182145
transcript_53843.known	chr7	-	1892	7	FSM	ENSMUSG00000025139.15	ENSMUST00000130439.3	1892	7	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	128.120602905578	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGCCTGTACCTGACCAGT	2876	False	NA	NA	False	ATTAAA	-17	NA	141456045	141437125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_141438319_141443243_141443335_141444438_141444592_141445720_141445904_141446476_141446627_141452431_141452521_141456012
transcript_53844.known	chr7	-	3788	6	FSM	ENSMUSG00000025139.15	ENSMUST00000001950.12	3788	6	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_2	12.1556571192182	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATTTTTGTTCTTGAGTAT	2697	False	NA	-5	True	AATAAA	-21	NA	141456224	141435319	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_141438319_141443243_141443335_141444438_141444592_141445720_141445904_141446476_141446627_141456012
transcript_5385.known	chr10	-	4479	12	FSM	ENSMUSG00000036099.17	ENSMUST00000047711.13	4479	12	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_7	11.4039285676849	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAAAGAAAAAAGAAAGA	3464	False	NA	NA	False	NA	NA	NA	93871610	93803961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_93806567_93809696_93809905_93810306_93810408_93816175_93816370_93820023_93820356_93826001_93826150_93829378_93829517_93832699_93832976_93836212_93836386_93839854_93839945_93842821_93842957_93871531
transcript_53850.known	chr7	-	977	5	FSM	ENSMUSG00000025147.8	ENSMUST00000209732.2	977	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	68.6676779860802	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGTGTCTGTGTGTGCGC	NA	False	NA	NA	False	AAAAAG	-5	NA	141579812	141562964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_141563316_141563989_141564115_141569815_141569910_141570081_141570243_141579566
transcript_53851.known	chr7	-	1490	5	FSM	ENSMUSG00000025147.8	ENSMUST00000084418.4	1490	5	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	10.8857705285386	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCCTCTCAGCCTG	NA	False	NA	-34	True	AATAAA	-18	NA	141614802	141562286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_141563316_141563989_141564115_141569815_141569910_141570081_141570243_141614721
transcript_53852.known	chr7	-	958	5	FSM	ENSMUSG00000025147.8	ENSMUST00000210684.2	958	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	69.7006994226026	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGACTGATGTTTTGATTTTT	NA	False	NA	NA	False	NA	NA	NA	141614802	141562769	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_141563316_141563989_141564115_141569815_141569910_141570130_141570243_141614721
transcript_53856.known	chr7	-	2127	9	FSM	ENSMUSG00000007891.17	ENSMUST00000151120.9	2127	9	0	0	0	0	multi-exon	FALSE	canonical	3	1941	junction_4	107.727593377927	1028	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGGTGTGCTCTGTACTGT	8684	False	NA	-2	True	AATAAA	-23	NA	141941775	141929647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_141930476_141930569_141930669_141930762_141930908_141931069_141931193_141934502_141934730_141936328_141936448_141937154_141937279_141939195_141939356_141941473
transcript_53863.known	chr7	-	824	3	FSM	ENSMUSG00000045777.15	ENSMUST00000105988.2	824	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCACTGAGATTCAGGATG	NA	False	NA	NA	False	NA	NA	NA	141927490	141909658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_141909852_141924594_141925048_141927312
transcript_53864.known	chr7	+	1695	11	FSM	ENSMUSG00000018819.11	ENSMUST00000018963.11	1695	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	3.11287648325468	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTAGTCTGTTCCTGGTA	NA	False	NA	NA	False	AATAAA	-14	NA	142014582	142048604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_142014704_142038215_142038363_142040083_142040243_142042155_142042253_142042584_142042678_142042865_142042910_142043061_142043144_142043636_142043772_142044081_142044160_142044295_142044403_142047972
transcript_53865.known	chr7	+	1395	11	FSM	ENSMUSG00000018819.11	ENSMUST00000105967.8	1395	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	3.19374388453426	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTGGATCTCCTGTGCTCA	NA	False	NA	NA	False	AATAAA	-23	NA	142014600	142048340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_142014704_142038215_142038363_142040083_142040243_142042155_142042253_142042602_142042678_142042865_142042910_142043061_142043144_142043636_142043772_142044081_142044160_142044295_142044403_142047972
transcript_53866.known	chr7	+	692	5	FSM	ENSMUSG00000037772.14	ENSMUST00000038675.7	692	5	0	0	0	0	multi-exon	FALSE	canonical	3	973	junction_1	229.96847610053	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGGACACTTTGCCTT	NA	False	NA	2	True	AATAAA	-20	NA	142086748	142094484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_142086932_142088741_142088865_142089806_142089890_142091003_142091078_142094255
transcript_53867.known	chr7	-	1605	3	FSM	ENSMUSG00000009248.7	ENSMUST00000009392.6	1605	3	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	4	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTTTGCAGTGCCTTGTA	NA	False	NA	-9	True	TATAAA	-15	NA	142523001	142520565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_142521077_142521636_142522437_142522707
transcript_53868.known	chr7	+	1876	8	FSM	ENSMUSG00000000244.18	ENSMUST00000075172.12	1876	8	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_6	2.66496544373966	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGCCAGACCCCACTTCCT	3761	False	NA	NA	False	NA	NA	NA	142559374	142573381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_142559756_142560644_142560743_142564770_142564846_142568695_142568798_142569317_142569405_142570937_142571022_142571315_142571411_142572427
transcript_53869.known	chr7	+	1587	7	FSM	ENSMUSG00000000244.18	ENSMUST00000082008.12	1587	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	2.98142396999972	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTAGAATCCTTTCTT	3808	False	NA	NA	False	NA	NA	NA	142559421	142573223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_142559756_142560644_142560743_142564770_142564846_142568695_142568798_142569317_142569405_142571315_142571411_142572427
transcript_53870.known	chr7	+	1582	9	FSM	ENSMUSG00000000244.18	ENSMUST00000009396.13	1582	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	3.07205143186113	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGGGTAGAATCCTTTCTT	3169	False	NA	NA	False	NA	NA	NA	142558782	142573223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_142558913_142559640_142559756_142560644_142560743_142564770_142564846_142568695_142568798_142569317_142569405_142570937_142571022_142571315_142571411_142572427
transcript_53871.known	chr7	+	1533	8	FSM	ENSMUSG00000037706.18	ENSMUST00000037941.10	1533	8	0	0	0	0	multi-exon	FALSE	canonical	3	5787	junction_4	310.433666383802	760	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCCAGACCTCTTCCTGT	NA	False	NA	42	True	AATAAA	-30	NA	142606475	142621671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_142606804_142616229_142616345_142618945_142619044_142619679_142619755_142619984_142620090_142620397_142620500_142620883_142620971_142621048
transcript_53876.nic	chr7	+	819	4	NIC	ENSMUSG00000045752.14	novel	895	4	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_3	63.0202789231812	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623150	142624824	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_142623251_142623491_142623558_142623672_142624030_142624528
transcript_53877.known	chr7	+	895	4	FSM	ENSMUSG00000045752.14	ENSMUST00000105920.8	895	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	69.3012746395524	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623104	142624824	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_142623251_142623491_142623588_142623672_142624030_142624528
transcript_53878.known	chr7	+	766	3	FSM	ENSMUSG00000045752.14	ENSMUST00000147995.2	766	3	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_2	18	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTCAACCAGGACCCCTCT	NA	False	NA	NA	False	NA	NA	NA	142623160	142624282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_142623251_142623491_142623558_142623672
transcript_53879.known	chr7	+	1519	3	FSM	ENSMUSG00000045752.14	ENSMUST00000060433.10	1519	3	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	1	128	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTGGCTTTTTCCGGGC	NA	False	NA	22	True	AATAAA	-21	NA	142622985	142624830	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_142623251_142623491_142623588_142623672
transcript_53881.nic	chr7	+	1588	2	ISM	ENSMUSG00000045752.14	ENSMUST00000060433.10	1519	3	9	7	9	-1	intron_retention	FALSE	canonical	3	160	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTGAATTGTGTGGCTTTT	NA	False	NA	15	True	AATAAA	-14	NA	142622994	142624823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr7_+_142623251_142623491
transcript_53882.known	chr7	+	1735	1	FSM	ENSMUSG00000045752.14	ENSMUST00000207776.2	1735	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	31	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAATTGTGTGGCTTTTT	NA	False	NA	16	True	AATAAA	-15	NA	142623089	142624824	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_142623100_142624800
transcript_53883.known	chr7	+	1525	11	FSM	ENSMUSG00000000154.17	ENSMUST00000052348.12	1525	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	2.44131112314674	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTTGGGCTTTGCCTAG	856	False	NA	NA	False	AATAAA	-25	NA	143027472	143053071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_143027575_143029806_143030043_143033021_143033120_143033456_143033618_143034126_143034260_143044548_143044662_143045482_143045591_143046578_143046680_143050687_143050790_143051046_143051168_143052821
transcript_53885.known	chr7	+	1383	10	FSM	ENSMUSG00000000154.17	ENSMUST00000145943.8	1383	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.12694383988229	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTCTTTGGGCTTTGCCTAG	900	False	NA	NA	False	AATAAA	-25	NA	143027516	143053071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_143027575_143029806_143030043_143033456_143033618_143034126_143034260_143044548_143044662_143045482_143045591_143046578_143046680_143050687_143050790_143051046_143051168_143052821
transcript_53886.known	chr7	+	1552	11	FSM	ENSMUSG00000000154.17	ENSMUST00000105917.3	1552	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.18747549010185	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAAAAGTTCTTTGGGC	2221	False	NA	NA	False	AATAAA	-16	NA	143028837	143053062	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_143028976_143029806_143030043_143033021_143033120_143033456_143033618_143034126_143034260_143044548_143044662_143045482_143045591_143046578_143046680_143050687_143050790_143051046_143051168_143052821
transcript_53888.known	chr7	-	757	2	FSM	ENSMUSG00000010760.6	ENSMUST00000010904.5	757	2	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	0	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTCTGTGTAGTTC	NA	False	NA	2	True	AATAAA	-27	NA	143056278	143055281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_143055554_143055793
transcript_5389.known	chr10	-	1790	1	FSM	ENSMUSG00000110869.2	ENSMUST00000214203.2	1790	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ATAAAAGCAAAAAAAAAAAA	3411	False	NA	NA	False	NA	NA	NA	93871663	93869873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_93869900_93871700
transcript_53894.known	chr7	-	2285	16	FSM	ENSMUSG00000059119.10	ENSMUST00000072727.7	2285	16	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_2	192.287354411741	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGGTTTTTTTGTTGTTT	NA	False	NA	-1	True	ATTAAA	-20	NA	143102829	143067315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_143068375_143072586_143072623_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
transcript_53902.known	chr7	-	2259	15	FSM	ENSMUSG00000059119.10	ENSMUST00000208190.2	2259	15	0	0	0	0	multi-exon	FALSE	canonical	3	471	junction_1	167.71624785905	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGATTGGTTTTTTTGTT	NA	False	NA	-5	True	ATTAAA	-16	NA	143102843	143067319	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102778
transcript_5391.known	chr10	+	3732	14	FSM	ENSMUSG00000005897.15	ENSMUST00000105290.9	3732	14	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	6	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAATTTCTGTATCCTGTC	NA	False	NA	NA	False	ATTAAA	-15	NA	93983884	94033073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_93983965_93992768_93992842_93998111_93998307_93999590_93999670_94001279_94001460_94003271_94003420_94003499_94003591_94006910_94007096_94007839_94008000_94017355_94017478_94024010_94024151_94026480_94026619_94028696_94028803_94031038
transcript_53910.known	chr7	-	2281	15	FSM	ENSMUSG00000059119.10	ENSMUST00000209098.2	2281	15	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_14	301.333092528951	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACTGAGATTGGTTTTT	NA	False	NA	-10	True	ATTAAA	-11	NA	143102565	143067324	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_143068375_143074120_143074178_143075137_143075168_143077897_143078018_143078430_143078454_143080902_143081049_143083154_143083295_143086045_143086118_143088022_143088155_143089387_143089475_143089634_143089777_143091953_143092054_143093924_143093984_143095484_143095516_143102473
transcript_53913.known	chr7	-	3222	23	FSM	ENSMUSG00000010755.18	ENSMUST00000010899.14	3222	23	0	0	0	0	multi-exon	TRUE	canonical	3	290	junction_21	336.211639490553	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAATGTGTCTAGCCTTCGC	NA	False	NA	NA	False	NA	NA	NA	143153827	143110966	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143146148_143146398_143153718
transcript_53917.known	chr7	-	2462	22	FSM	ENSMUSG00000010755.18	ENSMUST00000105909.4	2462	22	0	0	0	0	multi-exon	FALSE	canonical	3	1234	junction_21	93.4109735380392	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGTCTGGTCTGCCCTCTC	NA	False	NA	-3	True	AATAAA	-15	NA	143153793	143111443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_143111744_143112864_143112949_143113385_143113446_143115595_143115664_143116697_143116779_143118720_143118803_143122051_143122121_143122669_143122860_143123136_143123235_143123569_143123674_143123756_143123887_143124278_143124408_143125220_143125334_143128249_143128372_143129654_143129744_143130322_143130464_143138384_143138535_143139435_143139535_143140151_143140249_143140841_143140931_143142228_143142321_143153718
transcript_53932.known	chr7	-	2213	1	FSM	ENSMUSG00000010755.18	ENSMUST00000207168.2	2213	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AACAAAAAAACGAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	143153817	143151604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_143151600_143153800
transcript_53933.known	chr7	-	2298	7	FSM	ENSMUSG00000010751.16	ENSMUST00000146692.8	2298	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	62.0232931154811	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCAGTGCTGTGCCTTGTGCT	NA	False	NA	NA	False	AGTAAA	-24	NA	143203398	143190461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_143192174_143192981_143193027_143193638_143193713_143194488_143194601_143197012_143197142_143198517_143198609_143203263
transcript_53935.known	chr7	-	4170	6	FSM	ENSMUSG00000010751.16	ENSMUST00000075588.13	4170	6	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_4	22.3338308402298	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAATCTGGCTTGAATTGG	NA	False	NA	NA	False	NA	NA	NA	143203398	143188544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_143192174_143193638_143193713_143194488_143194601_143197012_143197142_143198517_143198609_143203263
transcript_53937.known	chr7	-	2641	21	FSM	ENSMUSG00000031090.15	ENSMUST00000033415.15	2641	21	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	7.20416546173115	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGCTTATTGATGTGTACG	NA	False	NA	NA	False	AATAAA	-25	NA	143376578	143349320	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_143349794_143351561_143351739_143352191_143352321_143352777_143352848_143353527_143353660_143356932_143357040_143357750_143357887_143359651_143359821_143360616_143360720_143361123_143361173_143361721_143361847_143362528_143362604_143364905_143365038_143366226_143366345_143366499_143366589_143367126_143367179_143369322_143369413_143369910_143369965_143372829_143372947_143374908_143374970_143376395
transcript_53941.nic	chr7	+	2536	9	NIC	ENSMUSG00000058454.16	novel	2752	9	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	8	junction_1	171.596137412822	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATGTTGTACTGTCTCCT	NA	False	NA	32	True	NA	NA	NA	143383950	143402147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_143384003_143387504_143387674_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
transcript_53943.known	chr7	+	2556	9	FSM	ENSMUSG00000058454.16	ENSMUST00000124340.8	2556	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	138.760078462791	159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATGTTGTACTGTCTCCT	NA	False	NA	32	True	NA	NA	NA	143383362	143402147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_143383477_143383875_143384003_143390374_143390467_143391498_143391722_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
transcript_53946.nnic	chr7	+	2174	7	NIC	ENSMUSG00000058454.16	novel	2556	9	NA	NA	-50	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	154.04265282346	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTATGTTGTACTGTCTCCT	NA	False	NA	32	True	NA	NA	NA	143383920	143402147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr7_+_143384003_143390374_143390467_143394169_143394261_143394894_143395109_143396850_143397056_143399177_143399310_143400789
transcript_53947.known	chr7	-	3286	18	FSM	ENSMUSG00000031078.16	ENSMUST00000103079.4	3286	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	258.149054338875	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTACTGTGTGATCTTCTGC	NA	False	NA	-20	True	AATAAA	-14	NA	144024746	143989471	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144004714_144004826_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
transcript_53950.known	chr7	-	2913	17	FSM	ENSMUSG00000031078.16	ENSMUST00000033407.13	2913	17	0	0	0	0	multi-exon	TRUE	canonical	3	340	junction_7	190.956545694956	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGATCTTCTGCAG	NA	False	NA	-18	True	AATAAA	-16	NA	144024482	143989469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_143990839_143991685_143991758_143992502_143992669_143993745_143993836_143995435_143995585_143999539_143999610_144003296_144003353_144005763_144005875_144006284_144006396_144008412_144008524_144010177_144010233_144011405_144011517_144014915_144015046_144017039_144017114_144017648_144017736_144019690_144019785_144024425
transcript_53959.known	chr7	-	3903	2	FSM	ENSMUSG00000031077.8	ENSMUST00000033394.8	3903	2	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCAGGTTTCTTGTTTATT	NA	False	NA	NA	False	ATTAAA	-12	NA	144136200	144131054	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_144134598_144135840
transcript_5396.known	chr10	+	566	4	FSM	ENSMUSG00000020022.18	ENSMUST00000179990.8	566	4	0	0	0	0	multi-exon	FALSE	canonical	3	3293	junction_3	309.018877524767	1562	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCAGTGTCTTGTGCGTTCA	NA	False	NA	13	True	ATTAAA	-13	NA	94034865	94056810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_94034993_94035811_94035895_94039149_94039238_94056542
transcript_53960.known	chr7	+	2299	3	FSM	ENSMUSG00000031074.15	ENSMUST00000105898.2	2299	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	3.5	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAACCATATGGTTGGTG	NA	False	NA	3	True	NA	NA	NA	144392331	144398173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_144392665_144394407_144394512_144396311
transcript_53962.known	chr7	+	1810	3	FSM	ENSMUSG00000031073.7	ENSMUST00000033389.7	1810	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	1.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTTGTTCTATTCCAAG	NA	False	NA	NA	False	ATTAAA	-23	NA	144450267	144454690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_144450669_144450852_144450957_144453385
transcript_53963.known	chr7	+	168	1	FSM	ENSMUSG00000115783.2	ENSMUST00000227063.2	168	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCCCCCCCAAGGGCATTTT	NA	False	NA	NA	False	NA	NA	NA	144468206	144468374	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_144468200_144468400
transcript_53964.known	chr7	+	2015	5	FSM	ENSMUSG00000031072.15	ENSMUST00000033388.12	2015	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_3	3.69966214673719	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGTCTGTCTGGGATCATT	NA	False	NA	8	True	AATAAA	-18	NA	144468871	144474871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_144469067_144470164_144470271_144471346_144471418_144472960_144473079_144473346
transcript_53966.known	chr7	-	3740	5	FSM	ENSMUSG00000070348.6	ENSMUST00000093962.5	3740	5	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_3	35.5316760088797	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCACTGTTGTCTGTGTTT	NA	False	NA	-4	True	AATAAA	-16	NA	144493606	144483667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_144486509_144487752_144487902_144491030_144491191_144491623_144491840_144493232
transcript_53972.known	chr7	+	2231	4	FSM	ENSMUSG00000031072.15	ENSMUST00000128057.8	2231	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	44.8131925020102	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTCTGACATTGTAAAACAA	NA	False	NA	NA	False	ATTAAA	-14	NA	144468836	144484485	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_+_144469067_144470164_144470271_144471346_144471418_144482661
transcript_53973.known	chr7	-	2993	25	FSM	ENSMUSG00000048677.10	ENSMUST00000058022.6	2993	25	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_4	4.91860837364933	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGTGGCCCTGTGTTGTT	NA	False	NA	NA	False	NA	NA	NA	144837748	144807659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr7_-_144808436_144809187_144809271_144809616_144809699_144810250_144810334_144810466_144810549_144810908_144810983_144811532_144811605_144812251_144812352_144813825_144813876_144814608_144814738_144815669_144815730_144815884_144816005_144820294_144820382_144820514_144820597_144821039_144821141_144821804_144821870_144822596_144822663_144823470_144823571_144826016_144826093_144827598_144827706_144830845_144830963_144832473_144832652_144833013_144833091_144833965_144834031_144837587
transcript_53976.known	chr8	+	5271	20	FSM	ENSMUSG00000004568.14	ENSMUST00000004684.13	5271	20	0	0	0	0	multi-exon	TRUE	canonical	3	218	junction_1	25.5526180280738	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCAGGCTGAAACAGACCT	NA	False	NA	24	True	AATAAA	-14	NA	3443037	3506601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_3443103_3477348_3477491_3479231_3479345_3479498_3479640_3482618_3482870_3484871_3484998_3486981_3487100_3489486_3489739_3491219_3491297_3494888_3495068_3497001_3497091_3498382_3498569_3500295_3500437_3500780_3500915_3501490_3501539_3501630_3501679_3501814_3502286_3503037_3503372_3504158_3504285_3504371
transcript_53980.known	chr8	-	2870	5	FSM	ENSMUSG00000069633.13	ENSMUST00000004686.13	2870	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	4.14578098794425	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTGTGTGTGTGTGTGTGTGT	NA	False	NA	NA	False	AATAAA	-17	NA	3517680	3507104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_3509435_3510271_3510335_3513921_3514101_3515782_3515972_3517571
transcript_53981.known	chr8	+	2065	14	FSM	ENSMUSG00000004567.17	ENSMUST00000004683.13	2065	14	0	0	0	0	multi-exon	FALSE	canonical	3	278	junction_8	29.619280463035	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGGTGGTCTAATTTGTAA	NA	False	NA	12	True	AATAAA	-13	NA	3550456	3565232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_3550628_3555737_3555944_3557148_3557317_3557400_3557567_3558318_3558428_3558683_3558781_3559135_3559236_3560319_3560427_3560539_3560690_3560813_3560916_3561687_3561811_3562649_3562866_3564782_3564914_3565013
transcript_53985.nnic	chr8	+	1574	11	NNC	ENSMUSG00000004565.16	novel	672	6	NA	NA	-271	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	97.8756864599171	20	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCCTGGTGCTGTCTTTGGG	NA	False	NA	16	True	AATAAA	-20	NA	3586283	3594266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_3586339_3586542_3586662_3586862_3587020_3587248_3587366_3587450_3587521_3587968_3588086_3591290_3591593_3592297_3592415_3592844_3592942_3593066_3593177_3593953
transcript_53989.nnic	chr8	+	767	4	NNC	ENSMUSG00000065952.14	novel	1621	6	NA	NA	-52	-15	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_3	10.3387082795139	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACTGCATTTTATTTATT	NA	False	NA	9	True	ATTAAA	-37	NA	3617937	3628582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_3618097_3623120_3623222_3627840_3628046_3628280
transcript_53991.known	chr8	+	960	3	FSM	ENSMUSG00000065952.14	ENSMUST00000153341.8	960	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	2.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATCTGTTTATTTAT	NA	False	NA	24	True	ATTAAA	-44	NA	3617994	3628597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_3618097_3623120_3623222_3627840
transcript_53993.nnic	chr8	+	1074	3	NNC	ENSMUSG00000065952.14	novel	960	3	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATCTGTTTATTTAT	NA	False	NA	24	True	ATTAAA	-44	NA	3617970	3628597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_3618187_3623120_3623222_3627840
transcript_53994.known	chr8	-	432	1	FSM	ENSMUSG00000066902.8	ENSMUST00000146939.2	432	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATTTGACAATGGAAACACA	NA	False	NA	NA	False	AAGAAA	-19	NA	3634230	3633798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_3633800_3634200
transcript_53998.known	chr8	-	2677	19	FSM	ENSMUSG00000019470.13	ENSMUST00000019614.13	2677	19	0	0	0	0	multi-exon	FALSE	canonical	3	374	junction_12	44.2084358744927	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGGTCTTGACCTCCTTC	1011	False	NA	-4	True	AATACA	-16	NA	3671316	3660086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663291_3663367_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
transcript_53999.known	chr8	-	4409	18	FSM	ENSMUSG00000019470.13	ENSMUST00000163038.8	4409	18	0	0	0	0	multi-exon	FALSE	canonical	3	374	junction_11	45.4063544476041	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTGGGTTCCTTGTATAGC	1022	False	NA	NA	False	GATAAA	-15	NA	3671305	3658420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_3660220_3660310_3660421_3660544_3660675_3660846_3661019_3661113_3661237_3661393_3661585_3661671_3661835_3662962_3663077_3663158_3663500_3663589_3663710_3663798_3663951_3664244_3664390_3665993_3666159_3666249_3666385_3668054_3668253_3668542_3668667_3668944_3669094_3671227
transcript_54.known	ERCC-00160	+	727	1	FSM	ERCC-00160A	DQ883658	727	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	41	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00160_+_0_700
transcript_540.known	chr1	-	654	3	FSM	ENSMUSG00000103708.2	ENSMUST00000193725.2	654	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	3	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCAGTGCCTCTGGCCTCTC	NA	False	NA	NA	False	AATAAA	-39	NA	36050125	36042065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_36042488_36042894_36043073_36050071
transcript_5400.known	chr10	+	3639	16	FSM	ENSMUSG00000020024.8	ENSMUST00000020212.6	3639	16	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_13	58.1305045183297	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACAGTCCACATTTGTTAC	9504	False	NA	NA	False	ATTAAA	-13	NA	94524515	94626715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_94524909_94554713_94554982_94555453_94555605_94561508_94561602_94564452_94564585_94573634_94573887_94575918_94576051_94584802_94584918_94586120_94586266_94586371_94586522_94602303_94602380_94604680_94604839_94606806_94606937_94622605_94622710_94624508_94624699_94625565
transcript_54004.known	chr8	+	1193	4	FSM	ENSMUSG00000087687.4	ENSMUST00000156380.4	1193	4	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_1	68.3715340376876	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTACTCTTCATTGATTT	5587	False	NA	NA	False	AAAACA	-14	NA	3671550	3674235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_3671612_3672341_3672429_3672592_3672626_3673223
transcript_54006.nnic	chr8	+	676	4	NNC	ENSMUSG00000087687.4	novel	363	4	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	310.762860643861	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTAGTGCCAAGTGTT	5603	False	NA	10	True	NA	NA	NA	3671566	3673372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_3671974_3672341_3672429_3672592_3672626_3673223
transcript_54007.known	chr8	+	363	4	FSM	ENSMUSG00000087687.4	ENSMUST00000207389.2	363	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	322.072800603977	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCTAGTGCCAAGTGTT	5638	False	NA	10	True	NA	NA	NA	3671601	3673372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_3671696_3672341_3672429_3672592_3672626_3673223
transcript_54009.known	chr8	+	376	1	FSM	ENSMUSG00000087687.4	ENSMUST00000208185.2	376	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	5587	False	NA	NA	False	AATATA	-6	NA	3671550	3671926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_3671600_3671900
transcript_54011.known	chr8	+	1847	19	FSM	ENSMUSG00000004626.15	ENSMUST00000004745.9	1847	19	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_17	74.555886735479	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTCACCTCATTTTC	4602	False	NA	16	True	AATAAA	-22	NA	3681169	3692795	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_3681205_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691894_3692056_3692645
transcript_54012.nic	chr8	+	1939	19	NIC	ENSMUSG00000004626.15	novel	2908	19	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_1	83.3438697042797	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGCTCACCTCATTTTC	4581	False	NA	16	True	AATAAA	-22	NA	3681148	3692795	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_3681279_3682219_3682270_3682499_3682582_3683290_3683368_3683847_3683927_3684019_3684124_3684474_3684624_3685445_3685531_3685615_3685747_3685831_3685940_3686180_3686239_3686355_3686422_3686493_3686575_3687115_3687255_3689507_3689618_3691110_3691207_3691734_3691821_3691897_3692056_3692645
transcript_54015.known	chr8	-	392	2	FSM	ENSMUSG00000089665.3	ENSMUST00000159364.3	392	2	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	0	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGTTGATGTCTTTCTAT	NA	False	NA	-4	True	AATACA	-15	NA	3722362	3721187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_3721397_3722179
transcript_54016.known	chr8	+	2546	2	FSM	ENSMUSG00000040236.5	ENSMUST00000044857.4	2546	2	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_1	0	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAATGTGTTTATGTA	NA	False	NA	NA	False	NA	NA	NA	3726298	3731255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_3726604_3729014
transcript_54018.nic	chr8	-	1045	6	ISM	ENSMUSG00000074491.10	ENSMUST00000062037.7	1242	9	2000	0	2	0	3prime_fragment	FALSE	canonical	2	2	junction_2	1.49666295470958	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATCTGTATTGGAAAAGAAT	NA	False	NA	NA	False	AATAAA	-27	NA	3768651	3766063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_3766557_3767193_3767310_3767416_3767566_3767737_3767828_3768341_3768447_3768559
transcript_54019.known	chr8	-	919	7	FSM	ENSMUSG00000031495.9	ENSMUST00000011445.8	919	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.74535599249993	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTCTCATCCTCTATGGA	NA	False	NA	NA	False	AATAAA	-21	NA	3928555	3921823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_3922111_3923738_3923849_3926253_3926406_3927055_3927131_3927879_3927970_3928250_3928338_3928437
transcript_54020.known	chr8	+	1578	12	FSM	ENSMUSG00000002948.20	ENSMUST00000110999.8	1578	12	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_11	89.4399470719399	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGGTGTCCTAAGCCTGG	NA	False	NA	20	True	AATAAA	-21	NA	4288828	4297897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_4289034_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694_4295826_4297656
transcript_54021.known	chr8	+	3497	11	FSM	ENSMUSG00000002948.20	ENSMUST00000110998.9	3497	11	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_7	24.9617707705203	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTCTGGTGTCCTAAGCCTG	NA	False	NA	19	True	AATAAA	-20	NA	4288739	4297896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_4289034_4293303_4293446_4293552_4293620_4293742_4293857_4293950_4294071_4294228_4294337_4294426_4294607_4294694_4294776_4294860_4295004_4295542_4295589_4295694
transcript_54023.known	chr8	+	1536	5	FSM	ENSMUSG00000011837.5	ENSMUST00000011981.5	1536	5	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_3	11.3880419739304	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGATTCCCCCTTTGAC	NA	False	NA	16	True	AATAAA	-16	NA	4303079	4306220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_4303305_4304281_4304402_4304550_4304620_4304991_4305374_4305480
transcript_54025.known	chr8	+	956	5	FSM	ENSMUSG00000011837.5	ENSMUST00000208459.2	956	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	54.9971590175347	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGAAGATGGAGGGACTGG	NA	False	NA	NA	False	NA	NA	NA	4303418	4305632	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_4303652_4304281_4304402_4304550_4304620_4304991_4305374_4305480
transcript_54026.known	chr8	-	1212	2	FSM	ENSMUSG00000048644.9	ENSMUST00000053252.9	1212	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTGCTGAGTTAACCAGTC	NA	False	NA	-16	True	AATAAA	-34	NA	4309274	4307659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_4308648_4309050
transcript_54028.known	chr8	-	1790	13	FSM	ENSMUSG00000002949.16	ENSMUST00000003029.14	1790	13	0	0	0	0	multi-exon	FALSE	canonical	3	458	junction_5	35.4920765805553	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAACGGTTTGAAGTGT	NA	False	NA	-13	True	AATAAA	-22	NA	4325913	4309730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_4310256_4310511_4310623_4311907_4311998_4315225_4315277_4316555_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
transcript_5403.known	chr10	-	1115	3	FSM	ENSMUSG00000045867.11	ENSMUST00000217809.2	1115	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_2	28	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCCTCTTTCAATGAGAG	NA	False	NA	2	True	AATAAA	-22	NA	95159427	95011126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_95011841_95158447_95158752_95159330
transcript_54030.nnic	chr8	-	2098	13	NNC	ENSMUSG00000002949.16	novel	1790	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	148.130479270435	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGAACGGTTTGAAGTGT	NA	False	NA	-13	True	AATAAA	-22	NA	4325913	4309730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_4310256_4310511_4310931_4311907_4311998_4315225_4315277_4316555_4316681_4316769_4316863_4317254_4317341_4317636_4317777_4317863_4318014_4318299_4318381_4319854_4320026_4324136_4324233_4325842
transcript_54037.known	chr8	+	867	8	FSM	ENSMUSG00000023235.15	ENSMUST00000127460.8	867	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	7.29830844253989	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATGAGGAAGGAACTACTGC	NA	False	NA	NA	False	NA	NA	NA	4375232	4409654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_4375289_4377756_4377894_4399605_4399656_4399771_4399895_4403882_4404001_4404090_4404204_4407592_4407690_4409481
transcript_54040.known	chr8	+	1058	6	FSM	ENSMUSG00000023235.15	ENSMUST00000024004.9	1058	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	5.67097875150313	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATGTCTAGTGTGCAGTA	7913	False	NA	NA	False	AATAAA	-35	NA	4399587	4410020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_4399656_4399771_4399895_4403882_4404001_4404090_4404204_4407592_4407690_4409481
transcript_54041.known	chr8	-	5743	6	FSM	ENSMUSG00000040028.11	ENSMUST00000098950.6	5743	6	0	0	0	0	multi-exon	FALSE	canonical	3	1349	junction_5	146.904594890698	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGAATCCCATTGTGTTCTT	NA	False	NA	NA	False	AATAAA	-33	NA	4375413	4335381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_4339925_4345335_4345562_4351684_4351839_4354926_4355031_4361598_4361787_4374885
transcript_54046.known	chr8	+	823	5	FSM	ENSMUSG00000023235.15	ENSMUST00000110982.8	823	5	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	4.60298815988049	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTGACCATTGCATGTGTGT	7913	False	NA	NA	False	TTTAAA	-16	NA	4399587	4407993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_4399656_4399771_4399895_4403882_4404001_4404090_4404204_4407592
transcript_54047.known	chr8	+	408	1	FSM	ENSMUSG00000109241.2	ENSMUST00000208558.2	408	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGCTGGTGTGCATGTTTT	NA	False	NA	NA	False	AAGAAA	-9	NA	4441725	4442133	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_4441700_4442100
transcript_54048.known	chr8	+	2539	9	FSM	ENSMUSG00000008206.17	ENSMUST00000175781.5	2539	9	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_8	5.7227615711298	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGAATTCTCTGCGCCAGA	NA	False	NA	11	True	AATAAA	-12	NA	4543452	4574051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_4543591_4565554_4565729_4566872_4566991_4568239_4568359_4568602_4568661_4569462_4570683_4571173_4571281_4573353_4573511_4573603
transcript_54049.known	chr8	+	2364	4	FSM	ENSMUSG00000058748.10	ENSMUST00000202692.5	2364	4	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	17.1075032271418	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAATATATAAAAGAAAAT	NA	False	NA	NA	False	NA	NA	NA	4663166	4680231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_4663279_4675839_4675967_4676163_4676225_4678167
transcript_54051.known	chr8	-	2156	13	FSM	ENSMUSG00000022322.9	ENSMUST00000022945.9	2156	13	0	0	0	0	multi-exon	TRUE	canonical	3	204	junction_9	39.0672497112351	358	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGTGTGAAATGTGGATT	NA	False	NA	-5	True	TATAAA	-15	NA	4829554	4785975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_4786408_4789124_4789267_4789594_4789682_4791847_4791967_4794446_4794579_4798704_4798826_4799291_4799461_4799551_4799786_4804219_4804313_4814880_4815090_4817906_4818023_4818143_4818312_4829420
transcript_54059.known	chr8	-	3197	4	FSM	ENSMUSG00000040459.12	ENSMUST00000048545.10	3197	4	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_2	83.8424448328861	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGGTGTGAGGACTCTT	5255	False	NA	NA	False	TATAAA	-16	NA	8740521	8715074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_8717417_8731383_8731468_8733747_8733974_8739976
transcript_5406.known	chr10	-	1661	3	FSM	ENSMUSG00000045867.11	ENSMUST00000053594.7	1661	3	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	28.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATAAAGTGCGTGTCCATT	NA	False	NA	NA	False	ATTAAA	-13	NA	95159970	95010607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_95011841_95158447_95158752_95159846
transcript_54060.known	chr8	-	3559	3	FSM	ENSMUSG00000040459.12	ENSMUST00000208252.2	3559	3	0	0	0	0	multi-exon	FALSE	canonical	3	891	junction_2	32	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATGTTTAAGCAATTTTTAT	5672	False	NA	-11	True	AATAAA	-35	NA	8740104	8716575	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_8717417_8731383_8733974_8739976
transcript_54062.known	chr8	-	5028	2	FSM	ENSMUSG00000049717.10	ENSMUST00000095476.6	5028	2	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAACTAGAATCAGTCTCCA	NA	False	NA	NA	False	NA	NA	NA	10026299	10019048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_10023808_10026030
transcript_54063.known	chr8	-	1392	2	FSM	ENSMUSG00000031504.7	ENSMUST00000033900.7	1392	2	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTGTTCTTGGGAATGTT	NA	False	NA	NA	False	ATTAAA	-17	NA	11528710	11503517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_11504527_11528327
transcript_54065.known	chr8	+	1307	10	FSM	ENSMUSG00000031505.12	ENSMUST00000177955.8	1307	10	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	41.4568048294447	179	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	33	True	NA	NA	NA	11547505	11563287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
transcript_54068.known	chr8	+	1359	10	FSM	ENSMUSG00000031505.12	ENSMUST00000033901.11	1359	10	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	63.9388210675343	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	33	True	NA	NA	NA	11547567	11563287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_11547741_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
transcript_54070.known	chr8	+	1108	9	FSM	ENSMUSG00000031505.12	ENSMUST00000178721.2	1108	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	91.7509366437204	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	33	True	NA	NA	NA	11547583	11563287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11562894
transcript_54072.nic	chr8	+	1325	9	NIC	ENSMUSG00000031505.12	novel	1307	10	NA	NA	0	0	intron_retention	FALSE	canonical	3	162	junction_1	41.5120464443756	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGAGTTTGTGGTTGTTC	NA	False	NA	33	True	NA	NA	NA	11547567	11563287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_11547627_11552621_11552773_11554884_11554931_11555430_11555520_11556706_11556816_11559321_11559558_11560226_11560348_11561876_11561998_11562894
transcript_54074.known	chr8	+	2830	9	FSM	ENSMUSG00000031505.12	ENSMUST00000178817.8	2830	9	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	84.6699474429977	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	NA	False	NA	NA	NA	11547566	11564960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_11547627_11552621_11552773_11554884_11554931_11556706_11556816_11559321_11559373_11559452_11559558_11560226_11560348_11561876_11561998_11562894
transcript_54082.known	chr8	+	382	3	FSM	ENSMUSG00000045969.9	ENSMUST00000210670.2	382	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	227	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGCACACCAGGACATCAG	NA	False	NA	NA	False	NA	NA	NA	11606064	11611620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_11606201_11607002_11607046_11611417
transcript_54084.known	chr8	+	1866	2	FSM	ENSMUSG00000045969.9	ENSMUST00000210740.2	1866	2	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	0	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATGTTTATTTCCTTAT	NA	False	NA	15	True	NA	NA	NA	11606062	11613250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_11606096_11611417
transcript_54086.known	chr8	+	721	2	FSM	ENSMUSG00000045969.9	ENSMUST00000209646.2	721	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGTGGGGAGAGCGAGAAGA	NA	False	NA	NA	False	CATAAA	-30	NA	11606110	11612048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_11606201_11611417
transcript_54088.known	chr8	+	2814	2	FSM	ENSMUSG00000045969.9	ENSMUST00000054399.6	2814	2	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_1	0	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTTTATTTCCTTATG	NA	False	NA	16	True	NA	NA	NA	11606065	11613251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_11607046_11611417
transcript_54090.known	chr8	+	1971	2	FSM	ENSMUSG00000045969.9	ENSMUST00000209565.2	1971	2	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	0	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCATGTTTATTTCCTTAT	NA	False	NA	15	True	NA	NA	NA	11608428	11613250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_11608567_11611417
transcript_54092.nic	chr8	-	2406	7	NIC	ENSMUSG00000031508.15	novel	2398	7	NA	NA	-126	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	194.263280684287	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685162	11661582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11684810
transcript_54093.known	chr8	-	2398	7	FSM	ENSMUSG00000031508.15	ENSMUST00000210530.2	2398	7	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_4	160.305350988529	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685754	11661582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11670261_11670374_11678438_11678531_11682865_11683019_11685410
transcript_54095.nic	chr8	-	2356	7	NIC	ENSMUSG00000031508.15	novel	2447	7	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_4	217.434281259112	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685062	11661582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_11662948_11665814_11665911_11669061_11669298_11673696_11673859_11678438_11678531_11682865_11683019_11684810
transcript_54096.known	chr8	-	2447	7	FSM	ENSMUSG00000031508.15	ENSMUST00000211174.2	2447	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	195.638626610959	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGTCTCTGAAACTGC	NA	False	NA	-3	True	AATAAA	-14	NA	11685754	11661583	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11673696_11673859_11678438_11678531_11682865_11683019_11685410
transcript_54099.nic	chr8	-	2294	6	NIC	ENSMUSG00000031508.15	novel	2398	7	NA	NA	-126	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_5	185.378531658874	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685162	11661582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_11662948_11665814_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11684810
transcript_541.known	chr1	-	9033	41	FSM	ENSMUSG00000037470.15	ENSMUST00000046875.14	9033	41	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_21	76.4630261956719	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTCTGCTTGTTCATTC	NA	False	NA	1	True	AATAAA	-20	NA	36283386	36179107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_36183333_36185112_36185267_36185705_36185823_36189125_36189241_36190714_36190876_36194153_36194337_36195307_36195393_36196480_36196583_36197188_36197278_36199022_36199108_36200756_36200843_36201285_36201445_36202301_36202492_36203524_36203605_36204589_36204693_36209279_36209376_36212515_36212647_36213159_36213292_36213976_36214184_36215313_36215409_36215856_36215881_36216598_36216698_36218639_36218761_36221550_36221716_36223436_36223569_36224913_36225050_36230609_36230696_36231466_36231587_36234930_36235082_36236624_36236717_36240785_36240847_36241859_36241960_36247022_36247124_36249066_36249146_36250470_36250568_36255212_36255388_36260292_36260406_36266564_36266696_36269738_36269822_36273887_36274024_36283150
transcript_54100.known	chr8	-	2285	6	FSM	ENSMUSG00000031508.15	ENSMUST00000033905.13	2285	6	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_3	111.790876193006	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATCTGTCTCTGAAACTGC	NA	False	NA	-3	True	AATAAA	-14	NA	11685754	11661583	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_11662948_11665814_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
transcript_54104.known	chr8	-	5156	5	FSM	ENSMUSG00000031508.15	ENSMUST00000169782.3	5156	5	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_2	122.541829593001	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTGTCTCTGAAACTGCT	NA	False	NA	-2	True	AATAAA	-15	NA	11685757	11661582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_11665911_11669061_11669298_11678438_11678531_11682865_11683019_11685410
transcript_54106.known	chr8	-	1359	3	FSM	ENSMUSG00000031508.15	ENSMUST00000211389.2	1359	3	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_2	21.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAACTGACAATACCAG	NA	False	NA	NA	False	NA	NA	NA	11685754	11677668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_11678531_11682865_11683019_11685410
transcript_54107.nnic	chr8	-	792	6	NNC	ENSMUSG00000031509.11	novel	1263	6	NA	NA	-3553	0	at_least_one_novel_splicesite	FALSE	canonical	1	10	junction_3	15.5897402159241	49	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTATCTGATAGGGCTGTTT	NA	False	NA	-8	True	AATAAA	-22	NA	11716157	11705477	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_11705682_11706108_11706190_11711671_11711756_11712589_11712692_11715035_11715099_11715899
transcript_54108.known	chr8	-	1263	6	FSM	ENSMUSG00000031509.11	ENSMUST00000033906.11	1263	6	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_5	20.7653557638679	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAATC	NA	False	NA	NA	False	NA	NA	NA	11728750	11704923	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_11705682_11706108_11706190_11711671_11711756_11712589_11712692_11715035_11715099_11728575
transcript_54116.known	chr8	-	3797	22	FSM	ENSMUSG00000000759.15	ENSMUST00000000776.15	3797	22	0	0	0	0	multi-exon	TRUE	canonical	3	142	junction_11	12.9206544206397	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCATGTGGTTTCTGAA	NA	False	NA	1	True	ATTAAA	-18	NA	12722248	12664276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_12665297_12666021_12666139_12671798_12671940_12674817_12674950_12675024_12675114_12682237_12682374_12686945_12687015_12687666_12687803_12689525_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12699689_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
transcript_54117.known	chr8	-	5724	16	FSM	ENSMUSG00000000759.15	ENSMUST00000167547.8	5724	16	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_5	13.5489236964909	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATAGTGTGTATGCAGC	NA	False	NA	NA	False	AATAAA	-25	NA	12722123	12680409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_12682374_12686945_12687015_12687666_12689716_12690700_12690810_12691096_12691208_12698620_12698788_12699689_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
transcript_54118.nic	chr8	-	1249	10	ISM	ENSMUSG00000000759.15	ENSMUST00000167547.8	5724	16	0	19286	0	215	5prime_fragment	FALSE	canonical	3	153	junction_4	12.328828005938	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGGTCTCCTGAGTTCC	NA	False	NA	NA	False	ATTAAA	-27	NA	12722123	12699695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_12699823_12700153_12700223_12703363_12703490_12704233_12704353_12705805_12705979_12707445_12707658_12708299_12708378_12711299_12711368_12713931_12714040_12721954
transcript_54119.known	chr8	+	604	4	FSM	ENSMUSG00000031441.16	ENSMUST00000143359.8	604	4	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	25.3683967872539	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCTGTGATGTGCTGCTTT	NA	False	NA	10	True	AATAAA	-17	NA	12906959	12912205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_12907000_12907882_12907987_12909313_12909480_12911911
transcript_5412.nnic	chr10	-	1472	5	NIC	ENSMUSG00000020027.19	novel	4242	5	NA	NA	-31	-123	combination_of_known_splicesites	FALSE	canonical	3	22	junction_3	175.888281303787	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACAACTAAAATTGGAT	NA	False	NA	NA	False	NA	NA	NA	95252750	95223651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_95224258_95224751_95224905_95226426_95226508_95250692_95251054_95252479
transcript_54120.known	chr8	-	2860	14	FSM	ENSMUSG00000038542.15	ENSMUST00000164416.8	2860	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	84.1979915149282	142	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCATTTGTGTTTTGTCC	NA	False	NA	-6	True	AATAAA	-17	NA	13155459	13127188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_13128290_13128547_13128672_13129637_13129764_13129894_13129969_13131263_13131365_13135322_13135465_13136250_13136327_13140656_13140761_13144142_13144198_13145830_13145873_13147602_13147669_13148562_13148637_13150324_13150415_13154774
transcript_54123.known	chr8	+	3728	20	FSM	ENSMUSG00000031446.15	ENSMUST00000016680.14	3728	20	0	0	0	0	multi-exon	TRUE	canonical	2	216	junction_3	44.2424070515772	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTTTACTAATACATTGG	NA	False	NA	26	True	AATAAA	-23	NA	13155620	13197940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_13155904_13156193_13156310_13165469_13165574_13171676_13171747_13172806_13172881_13173466_13173630_13173869_13173960_13174790_13174874_13177709_13177778_13183122_13183242_13183648_13183842_13185864_13185970_13186132_13186244_13186335_13186422_13186795_13186904_13190202_13190317_13192492_13192599_13192961_13193135_13194276_13194430_13196531
transcript_54134.known	chr8	-	3013	8	FSM	ENSMUSG00000038515.11	ENSMUST00000210317.2	3013	8	0	0	0	0	multi-exon	FALSE	canonical	3	341	junction_2	30.9812319750826	161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAAAGTAAATAAAAAT	3637	False	NA	NA	False	NA	NA	NA	13250620	13225161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_13227143_13229322_13229509_13229582_13229756_13236882_13236980_13239622_13239748_13242049_13242209_13250048_13250201_13250480
transcript_54137.known	chr8	-	2729	7	FSM	ENSMUSG00000038506.14	ENSMUST00000203467.3	2729	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	15.2397506541282	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGATGTCCTTTATTC	NA	False	NA	-3	True	AATAAA	-14	NA	13337830	13305963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_13307977_13308946_13309044_13311384_13311468_13321589_13321721_13328516_13328686_13330916_13331126_13337803
transcript_54138.known	chr8	-	2955	6	FSM	ENSMUSG00000038506.14	ENSMUST00000110838.8	2955	6	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	13.5558105622644	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTGATGTCCTTTATTC	NA	False	NA	-3	True	AATAAA	-14	NA	13338131	13305963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_13307977_13308946_13309044_13321589_13321721_13328516_13328686_13330908_13331126_13337803
transcript_54140.known	chr8	-	2853	5	FSM	ENSMUSG00000038506.14	ENSMUST00000110840.8	2853	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	12.0701077045733	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTGATGTCCTTTATTCT	NA	False	NA	-2	True	AATAAA	-15	NA	13338125	13305962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_13307977_13321589_13321721_13328516_13328686_13330908_13331126_13337803
transcript_54142.known	chr8	+	4335	13	FSM	ENSMUSG00000038497.8	ENSMUST00000045229.7	4335	13	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_7	13.4873912311545	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTGCTTTCCTGAGTGGT	NA	False	NA	NA	False	AATAGA	-22	NA	13338210	13372924	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979_13346109_13348212_13348306_13353727_13353915_13358345_13358467_13360144_13360341_13363805_13363957_13368842_13368923_13369762_13369913_13370760
transcript_54144.known	chr8	+	2723	5	FSM	ENSMUSG00000038497.8	ENSMUST00000210063.2	2723	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	9.44391338376205	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	13338189	13347617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_13338388_13341656_13342172_13342709_13342890_13344845_13345038_13345979
transcript_54155.known	chr8	+	2511	12	FSM	ENSMUSG00000038482.12	ENSMUST00000209885.2	2511	12	0	0	0	0	multi-exon	FALSE	canonical	3	547	junction_1	150.974903502547	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTGTGTTTCTGTAACTC	2103	False	NA	94	True	AATAAA	-24	NA	13388750	13428448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_13388807_13389664_13389740_13407042_13407110_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
transcript_5416.known	chr10	-	605	3	FSM	ENSMUSG00000020027.19	ENSMUST00000150432.8	605	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	233.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTAGAGATAGTTCGCATT	NA	False	NA	NA	False	ATTAAA	-25	NA	95251346	95248899	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_95248973_95250692_95251054_95251175
transcript_54162.known	chr8	+	2421	11	FSM	ENSMUSG00000038482.12	ENSMUST00000209396.2	2421	11	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_2	290.39449030586	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAAGCTCTGTGTTTCTG	2120	False	NA	88	True	AATAAA	-18	NA	13388767	13428442	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_13388807_13389664_13389740_13415088_13415196_13419458_13419581_13420480_13420647_13420878_13421023_13421351_13421421_13422465_13422618_13422935_13423103_13423844_13423924_13427141
transcript_54168.known	chr8	+	2301	18	FSM	ENSMUSG00000038416.16	ENSMUST00000043962.9	2301	18	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_10	60.600055957127	92	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTCCAAGCTGGTAGAGTG	NA	False	NA	17	True	AATAAA	-24	NA	13807675	13831938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_13807855_13808997_13809053_13809139_13809238_13810529_13810569_13810976_13811118_13812850_13813011_13813819_13813912_13814568_13814703_13816417_13816498_13817537_13817588_13818560_13818635_13819376_13819503_13821297_13821451_13823340_13823405_13825707_13825770_13827471_13827608_13829227_13829319_13831371
transcript_54177.known	chr8	+	2057	9	FSM	ENSMUSG00000038398.9	ENSMUST00000043767.9	2057	9	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_6	38.5873603010105	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGCATCTTGTGGTGCT	NA	False	NA	NA	False	NA	NA	NA	13835614	13849193	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_13835885_13836146_13836254_13837364_13837472_13841881_13841981_13842099_13842211_13845439_13845496_13845583_13845740_13846458_13846593_13848176
transcript_5418.known	chr10	-	623	3	FSM	ENSMUSG00000020027.19	ENSMUST00000129942.2	623	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	245	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGGCTCCAGAAGGAACTT	NA	False	NA	NA	False	ATTAAA	-1	NA	95252074	95248923	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_95248973_95250692_95251054_95251861
transcript_54182.known	chr8	+	1131	2	FSM	ENSMUSG00000038398.9	ENSMUST00000211643.2	1131	2	0	0	0	0	multi-exon	FALSE	canonical	3	312	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAAGGAGCCTAGACAAGT	NA	False	NA	NA	False	AATACA	-12	NA	13835644	13837037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_13835885_13836146
transcript_54184.known	chr8	+	4013	2	FSM	ENSMUSG00000047710.9	ENSMUST00000051870.8	4013	2	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_1	0	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCATGTGTACTTAATTT	NA	False	NA	17	True	ATTAAA	-19	NA	13919640	13931639	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_13919812_13927797
transcript_54189.known	chr8	-	793	4	FSM	ENSMUSG00000031458.9	ENSMUST00000033839.9	793	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	307.613393726606	456	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTAGTATGCTCTGTCTGCG	NA	False	NA	-8	True	AATAAA	-16	NA	13940268	13934793	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_13935202_13935665_13935882_13937759_13937827_13940166
transcript_54195.known	chr8	+	2035	11	FSM	ENSMUSG00000038365.9	ENSMUST00000209913.2	2035	11	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_9	44.5353791945235	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATAATTTTTCTGCAACAA	NA	False	NA	13	True	AATAAA	-19	NA	13957802	13990521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13973924_13974018_13976947_13977042_13979255_13979441_13981184_13981365_13985145_13985290_13988921_13988949_13989562
transcript_54196.known	chr8	+	2012	10	FSM	ENSMUSG00000038365.9	ENSMUST00000043520.5	2012	10	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_9	11.3572731903828	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATAATTTTTCTGCAACAAT	NA	False	NA	14	True	AATAAA	-20	NA	13957802	13990522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_13957864_13964943_13965085_13970947_13971049_13971884_13971935_13973924_13974018_13976947_13977042_13979255_13979441_13981181_13981365_13985145_13985290_13989562
transcript_5420.known	chr10	-	2222	3	FSM	ENSMUSG00000020027.19	ENSMUST00000020215.16	2222	3	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_2	23.5	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTTTGAGTTGTAGGTGTA	NA	False	NA	2	True	AATAAA	-32	NA	95252719	95247351	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_95248973_95250692_95251054_95252479
transcript_54200.nnic	chr8	-	2480	4	NNC	ENSMUSG00000050052.13	novel	373	4	NA	NA	23	0	intron_retention	FALSE	canonical	3	23	junction_3	123.22427610752	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTAGTGTGTATATTTA	4548	False	NA	-4	True	ATTAAA	-18	NA	14025009	14002007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_14004136_14005719_14005818_14024540_14024730_14024944
transcript_54201.known	chr8	-	373	4	FSM	ENSMUSG00000050052.13	ENSMUST00000145695.2	373	4	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_3	120.875509880575	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGCTGAAGGCAGAGAAGAAA	4525	False	NA	NA	False	ACTAAA	-39	NA	14025032	14004112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_14004136_14005719_14005818_14024540_14024730_14024969
transcript_54206.known	chr8	-	323	2	FSM	ENSMUSG00000050052.13	ENSMUST00000210414.2	323	2	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGTGGCTGCCCACCCTGG	4864	False	NA	NA	False	NA	NA	NA	14024693	14003965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_14004136_14024540
transcript_54207.known	chr8	-	2463	3	FSM	ENSMUSG00000050052.13	ENSMUST00000062613.12	2463	3	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_2	12.5	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTTAGTGTGTATATTTA	4780	False	NA	-4	True	ATTAAA	-18	NA	14024777	14002007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_14004136_14005719_14005818_14024540
transcript_54209.nnic	chr8	-	1651	6	NNC	ENSMUSG00000051978.10	novel	1557	6	NA	NA	-30	0	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_5	79.7696684210233	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATATTTGTGATAAGATT	NA	False	NA	-6	True	AATAAA	-18	NA	14140331	14077560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140176
transcript_5421.known	chr10	-	497	3	FSM	ENSMUSG00000020027.19	ENSMUST00000135822.8	497	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	247	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTACTAACTATATCCGTTAA	NA	False	NA	NA	False	NA	NA	NA	95253042	95248871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_95248973_95250692_95251054_95253007
transcript_54210.known	chr8	-	1557	6	FSM	ENSMUSG00000051978.10	ENSMUST00000110813.5	1557	6	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_5	39.1591624016653	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCATATTTGTGATAAGATT	NA	False	NA	-6	True	AATAAA	-18	NA	14140301	14077560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140240
transcript_54211.nnic	chr8	-	1318	6	NNC	ENSMUSG00000051978.10	novel	1557	6	NA	NA	-30	-333	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_5	79.7696684210233	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGAGCTGTCATTTGACTC	NA	False	NA	NA	False	NA	NA	NA	14140331	14077893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_14078154_14080592_14080785_14083335_14083765_14114204_14114340_14128769_14128917_14140176
transcript_54219.nic	chr8	+	1806	4	NIC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-151	2220	combination_of_known_junctions	FALSE	canonical	3	37	junction_2	81.7897032367495	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGATTTGCTGATCATATT	NA	False	NA	16	True	AAGAAA	-2	NA	14938852	14947279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_14939119_14940491_14940624_14944571_14945231_14946530
transcript_54220.nic	chr8	+	2466	4	NIC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-151	2880	combination_of_known_junctions	FALSE	canonical	3	37	junction_2	81.7897032367495	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGAGGTATGATGCCTAT	NA	False	NA	10	True	TATAAA	-18	NA	14938852	14947939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_14939119_14940491_14940624_14944571_14945231_14946530
transcript_54221.nnic	chr8	+	1211	3	NNC	ENSMUSG00000026317.8	novel	6857	3	NA	NA	-173	2880	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	81	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGGAGGTATGATGCCTAT	NA	False	NA	10	True	TATAAA	-18	NA	14938830	14947939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_14939119_14944571_14944993_14947437
transcript_54222.known	chr8	+	6857	3	FSM	ENSMUSG00000026317.8	ENSMUST00000027554.8	6857	3	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	24.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTGCCATATATATGT	NA	False	NA	6	True	NA	NA	NA	14938110	14951720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_14939119_14944571_14945231_14946530
transcript_54224.known	chr8	+	4662	14	FSM	ENSMUSG00000039842.16	ENSMUST00000039412.15	4662	14	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_4	12.6528524276628	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGAAGCAATAATTTTAATT	NA	False	NA	NA	False	AATAAA	-17	NA	18645146	18853205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18675575_18675691_18677133_18677257_18679561_18679652_18681531_18682660_18691580_18691682_18718961_18719000_18721107_18721271_18738997_18739076_18838254_18838493_18851421
transcript_54228.known	chr8	+	2067	8	FSM	ENSMUSG00000039842.16	ENSMUST00000146819.8	2067	8	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_4	14.4391757354209	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACTGTTGACCTGTATACC	NA	False	NA	NA	False	ATTAAA	-22	NA	18645597	18682917	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_18645652_18646938_18647031_18657294_18657414_18672622_18672711_18675575_18675691_18677133_18677257_18679561_18679652_18681531
transcript_54232.known	chr8	+	10779	8	FSM	ENSMUSG00000031467.11	ENSMUST00000149565.8	10779	8	0	0	0	0	multi-exon	FALSE	canonical	3	636	junction_4	34.1778063804509	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGGTACTATGATGTTTA	NA	False	NA	NA	False	NA	NA	NA	18896292	18941377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_18896795_18911492_18911563_18918908_18919025_18920853_18920944_18926055_18926147_18928022_18928185_18929620_18929745_18931753
transcript_54237.nic	chr8	+	334	2	ISM	ENSMUSG00000031467.11	ENSMUST00000033847.5	2841	8	195	21916	195	-21916	5prime_fragment	FALSE	canonical	3	729	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAGAAAATGTAATATATC	NA	False	NA	NA	False	NA	NA	NA	18896489	18911521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_18896795_18911492
transcript_54239.known	chr8	-	2838	7	FSM	ENSMUSG00000039814.16	ENSMUST00000095438.10	2838	7	0	0	0	0	multi-exon	TRUE	canonical	2	24	junction_4	7.05730511991338	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCATTAGTGTTAGTATCTA	NA	False	NA	-3	True	NA	NA	NA	19000991	18982744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_18984622_18987242_18987355_18989083_18989254_18990628_18990839_18991960_18992146_18998574_18998759_19000891
transcript_5424.known	chr10	-	660	3	FSM	ENSMUSG00000112261.2	ENSMUST00000219379.2	660	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	4.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGAGTCACTGAGTTCT	1553	False	NA	NA	False	NA	NA	NA	95297086	95281177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_95281620_95296475_95296588_95296980
transcript_54240.known	chr8	+	591	1	FSM	ENSMUSG00000081094.5	ENSMUST00000122422.3	591	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCCCTCGTGTCTGTAC	7117	False	NA	NA	False	AAGAAA	-4	NA	19542951	19543542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_19543000_19543500
transcript_54247.nnic	chr8	+	1919	6	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-27	-2739	multi-exon	FALSE	non_canonical	0	0	junction_5	531.296677949336	28	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTTTATGAGTGTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	19834734	20043149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811_20042916_20043091
transcript_54261.nnic	chr8	+	1073	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-134	-3868	multi-exon	FALSE	canonical	3	906	junction_2	214.058403245469	36	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGAGCCTCATCTTTTCT	NA	False	NA	NA	False	AGTAAA	-37	NA	19834627	20042020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811
transcript_54262.nnic	chr8	+	1278	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-134	-3663	multi-exon	FALSE	canonical	3	906	junction_2	214.058403245469	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGAGTCTTGAGATATT	NA	False	NA	NA	False	ATTAAA	-25	NA	19834627	20042225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811
transcript_54263.nnic	chr8	+	1340	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-134	-3601	multi-exon	FALSE	canonical	3	906	junction_2	214.058403245469	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTCTCCTGTCTCAGTGTT	NA	False	NA	NA	False	CATAAA	-18	NA	19834627	20042287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811
transcript_54264.nnic	chr8	+	2136	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-68	-2739	multi-exon	FALSE	canonical	3	906	junction_2	214.058403245469	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTTTATGAGTGTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	19834693	20043149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036160_20039783_20039904_20041811
transcript_5427.known	chr10	-	666	6	FSM	ENSMUSG00000062981.6	ENSMUST00000075829.3	666	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_5	1622.28826045188	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCAAGTGTGTATTTCATT	NA	False	NA	-9	True	AATAAA	-16	NA	95337789	95316667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332750_95336244_95336385_95337751
transcript_54270.nnic	chr8	+	1131	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-25	-3868	multi-exon	FALSE	canonical	3	606	junction_2	335.627770007191	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGAGCCTCATCTTTTCT	NA	False	NA	NA	False	AGTAAA	-37	NA	19834736	20042020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr8_+_19834867_20030550_20030924_20035860_20036160_20039783_20039904_20041811
transcript_54271.nnic	chr8	+	1445	5	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-134	-3663	multi-exon	FALSE	canonical	3	606	junction_2	335.627770007191	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGAGTCTTGAGATATT	NA	False	NA	NA	False	ATTAAA	-25	NA	19834627	20042225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr8_+_19834867_20030550_20030924_20035860_20036160_20039783_20039904_20041811
transcript_54284.nnic	chr8	+	1050	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	7	-3868	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	265.429369136123	16	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGAGCCTCATCTTTTCT	NA	False	NA	NA	False	AGTAAA	-37	NA	20016472	20042020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811
transcript_54285.nnic	chr8	+	1260	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	2	-3663	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	265.429369136123	7	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGAGTCTTGAGATATT	NA	False	NA	NA	False	ATTAAA	-25	NA	20016467	20042225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811
transcript_54286.nnic	chr8	+	1385	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	-61	-3601	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	265.429369136123	10	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTCTCCTGTCTCAGTGTT	NA	False	NA	NA	False	CATAAA	-18	NA	20016404	20042287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811
transcript_54287.nnic	chr8	+	2195	5	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	-9	-2739	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	265.429369136123	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGTGTTTATGAGTGTGT	NA	False	NA	NA	False	ATTAAA	-23	NA	20016456	20043149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_20016689_20030550_20030757_20035860_20036160_20039783_20039904_20041811
transcript_54292.nic	chr8	+	1233	5	ISM	ENSMUSG00000071793.13	ENSMUST00000140111.8	4009	6	-9	13478	-9	-3868	5prime_fragment	FALSE	canonical	3	606	junction_2	352.991147197773	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGAGCCTCATCTTTTCT	NA	False	NA	NA	False	AGTAAA	-37	NA	20016456	20042020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_20016689_20030550_20030924_20035860_20036160_20039783_20039904_20041811
transcript_54299.nnic	chr8	+	1231	4	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-134	335	multi-exon	FALSE	canonical	3	77	junction_3	482.157881012249	30	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCATTCAACGTTAGGGC	NA	False	NA	NA	False	AATAAA	-15	NA	19834627	20046223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr8_+_19834867_20030550_20030757_20035860_20036156_20045732
transcript_543.known	chr1	+	4640	7	FSM	ENSMUSG00000037447.17	ENSMUST00000115032.8	4640	7	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.46572158042361	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTTGTTTGCTTTATGG	NA	False	NA	NA	False	AATAAA	-31	NA	36346834	36362072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_36346918_36355289_36355409_36356284_36356406_36356690_36356744_36357164_36357263_36357568_36357735_36358072
transcript_5431.known	chr10	-	661	6	FSM	ENSMUSG00000062981.6	ENSMUST00000218893.2	661	6	0	0	0	0	multi-exon	FALSE	canonical	3	2875	junction_5	503.887924046608	1038	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATCCAAGTGTGTATTTCA	NA	False	NA	-11	True	AATAAA	-14	NA	95337802	95316669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_95316840_95326107_95326275_95329492_95329578_95332685_95332750_95336244_95336385_95337767
transcript_54310.nnic	chr8	+	1276	4	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	-61	335	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_3	385.262104143256	54	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCATTCAACGTTAGGGC	NA	False	NA	NA	False	AATAAA	-15	NA	20016404	20046223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_20016689_20030550_20030757_20035860_20036156_20045732
transcript_54312.nnic	chr8	+	1386	4	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	-4	335	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_3	334.006320632143	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGCATTCAACGTTAGGGC	NA	False	NA	NA	False	AATAAA	-15	NA	20016461	20046223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_20016689_20030550_20030924_20035860_20036156_20045732
transcript_54317.nnic	chr8	+	905	3	NNC	ENSMUSG00000071793.13	novel	4009	6	NA	NA	-1	-9553	at_least_one_novel_splicesite	FALSE	canonical	3	882	junction_1	12	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCATGATTATGGCTTCTG	NA	False	NA	NA	False	NA	NA	NA	20016464	20036335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_20016689_20030550_20030757_20035860
transcript_54318.nnic	chr8	+	404	2	Fusion	ENSMUSG00000071793.13_ENSMUSG00000110669.2	novel	948	5	NA	NA	-134	-15173	multi-exon	FALSE	canonical	3	1220	junction_1	0	9	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGGAGAACTACTGTTTA	NA	False	NA	NA	False	NA	NA	NA	19834627	20030715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr8_+_19834867_20030550
transcript_5432.known	chr10	-	455	5	FSM	ENSMUSG00000062981.6	ENSMUST00000217777.2	455	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	1680.921826707	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGGAAAAAATAAAAATACCC	NA	False	NA	-37	True	NA	NA	NA	95337789	95316695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_95316840_95329492_95329578_95332685_95332750_95336244_95336385_95337767
transcript_5433.known	chr10	+	1103	4	FSM	ENSMUSG00000074781.6	ENSMUST00000220127.2	1103	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	985.351826619417	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTTGCCTTTGTACAGTTT	NA	False	NA	NA	False	AGTAAA	-18	NA	95351046	95378868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_95351100_95377066_95377241_95377499_95377641_95378133
transcript_54334.known	chr8	+	4659	5	FSM	ENSMUSG00000071796.14	ENSMUST00000153748.2	4659	5	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	481.210452920549	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAAGTAGATGTCTT	7188	False	NA	NA	False	AATAAA	-5	NA	20143847	20172994	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_20143957_20157802_20158000_20163109_20163409_20167037_20167158_20169060
transcript_54339.nnic	chr8	+	1111	4	NNC	ENSMUSG00000110649.2	novel	422	2	NA	NA	-21097	3971	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_2	4.49691252107735	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGTGTCTGTTAACAACA	5292	False	NA	NA	False	NA	NA	NA	20555602	20588308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_20555835_20576529_20576922_20584150_20584338_20588008
transcript_5434.known	chr10	+	3867	4	FSM	ENSMUSG00000074781.6	ENSMUST00000099329.5	3867	4	0	0	0	0	multi-exon	FALSE	canonical	3	1883	junction_3	164.877732476726	688	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGATGATTTGACTGGTC	NA	False	NA	13	True	AATAAA	-17	NA	95351006	95381519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_95351100_95377066_95377314_95377499_95377641_95378133
transcript_54342.nnic	chr8	+	867	2	NNC	ENSMUSG00000110649.2	novel	422	2	NA	NA	-21097	-7173	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACACATCCAGTCTTCTC	5292	False	NA	NA	False	ATTAAA	-20	NA	20555602	20577164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_20555835_20576529
transcript_54350.nnic	chr8	+	1324	5	Fusion	ENSMUSG00000096401.3_ENSMUSG00000110458.2	novel	930	5	NA	NA	-118	-3641	multi-exon	FALSE	canonical	3	434	junction_2	317.198183317622	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTCTCCTGTCTCAGTGTT	NA	False	NA	NA	False	CATAAA	-18	NA	20697866	20723625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717497_20721120_20721241_20723149
transcript_54354.nnic	chr8	+	1224	5	Fusion	ENSMUSG00000096401.3_ENSMUSG00000110458.2	novel	930	5	NA	NA	-118	-3908	multi-exon	FALSE	canonical	3	200	junction_2	399.990234255788	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAGAGCCTCATCTTTTCT	NA	False	NA	NA	False	AGTAAA	-37	NA	20697866	20723358	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr8_+_20698090_20711891_20712265_20717197_20717497_20721120_20721241_20723149
transcript_54357.nnic	chr8	+	1192	4	Fusion	ENSMUSG00000096401.3_ENSMUSG00000110458.2	novel	930	5	NA	NA	-118	283	multi-exon	FALSE	canonical	3	112	junction_3	226.010324247957	20	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCATGTGGGCATTCAAA	NA	False	NA	NA	False	AATAAA	-7	NA	20697866	20727549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr8_+_20698090_20711891_20712098_20717197_20717493_20727081
transcript_54358.nnic	chr8	+	1359	4	Fusion	ENSMUSG00000096401.3_ENSMUSG00000110458.2	novel	930	5	NA	NA	-118	283	multi-exon	FALSE	canonical	3	112	junction_3	241.687125570781	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACCATGTGGGCATTCAAA	NA	False	NA	NA	False	AATAAA	-7	NA	20697866	20727549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr8_+_20698090_20711891_20712265_20717197_20717493_20727081
transcript_5436.known	chr10	-	3210	5	FSM	ENSMUSG00000020029.7	ENSMUST00000020217.7	3210	5	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_2	92.7937902017156	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTTTATTTTTAGTTT	NA	False	NA	-21	True	AATAAA	-16	NA	95400008	95382868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_95385353_95385637_95385723_95387310_95387356_95388347_95388459_95399523
transcript_54361.nnic	chr8	+	1160	6	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17391	-252	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	216.45082582425	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTTTGAGAAATTTGCTGG	5821	False	NA	NA	False	AATAAA	-16	NA	21090221	21122535	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_21090445_21107448_21107655_21112754_21113054_21116684_21116805_21118696_21118865_21122391
transcript_54362.nnic	chr8	+	1232	6	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17391	-180	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	216.45082582425	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGATGTCTTTTTCTTTCA	5821	False	NA	NA	False	AATAAA	-14	NA	21090221	21122607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_21090445_21107448_21107655_21112754_21113054_21116684_21116805_21118696_21118865_21122391
transcript_54364.nnic	chr8	+	1399	6	NNC	ENSMUSG00000095403.9	novel	955	5	NA	NA	-17391	-180	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	216.584948692193	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAGATGTCTTTTTCTTTCA	5821	False	NA	NA	False	AATAAA	-14	NA	21090221	21122607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_21090445_21107448_21107822_21112754_21113054_21116684_21116805_21118696_21118865_21122391
transcript_54365.known	chr8	+	411	2	FSM	ENSMUSG00000074446.4	ENSMUST00000098899.4	411	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTGTGTTCACATTCT	NA	False	NA	NA	False	AATAAA	-16	NA	21545062	21546032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_21545269_21545827
transcript_54366.known	chr8	+	377	2	FSM	ENSMUSG00000074442.5	ENSMUST00000098896.5	377	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTTTGTGTTCACATTCT	NA	False	NA	NA	False	AATAAA	-16	NA	21681629	21682565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_21681802_21682360
transcript_54367.known	chr8	+	4960	4	FSM	ENSMUSG00000063362.14	ENSMUST00000072572.13	4960	4	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_2	9.93310961716756	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGCTGGCTCCCTTTGGTG	NA	False	NA	5	True	NA	NA	NA	22550736	22561643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_22550787_22551901_22552133_22555015_22555948_22557896
transcript_54369.nnic	chr8	+	1651	4	NNC	ENSMUSG00000063362.14	novel	4960	4	NA	NA	-22	-1587	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_2	7.11805216802087	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCCTAAATTTATTCTT	NA	False	NA	NA	False	NA	NA	NA	22550714	22558308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_22550787_22551901_22552137_22555015_22555948_22557896
transcript_54370.nnic	chr8	+	2955	4	NNC	ENSMUSG00000063362.14	novel	4960	4	NA	NA	-22	-283	intron_retention	FALSE	canonical	3	51	junction_2	7.11805216802087	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAACTTTTCTCTTTCTTCT	NA	False	NA	NA	False	NA	NA	NA	22550714	22559612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_22550787_22551901_22552137_22555015_22555948_22557896
transcript_54374.nnic	chr8	+	1168	3	NNC	ENSMUSG00000063362.14	novel	4960	4	NA	NA	-22	413	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_2	8	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAATTGAAGAATTACTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	22550714	22555876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_22550787_22551901_22552137_22555015
transcript_54375.nnic	chr8	+	1660	3	NNC	ENSMUSG00000063362.14	novel	4960	4	NA	NA	-22	905	at_least_one_novel_splicesite	FALSE	canonical	3	51	junction_2	8	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTACTTGGTCTATGAGTTC	NA	False	NA	NA	False	GATAAA	-21	NA	22550714	22556368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_22550787_22551901_22552137_22555015
transcript_54377.known	chr8	-	2050	16	FSM	ENSMUSG00000031478.17	ENSMUST00000110730.10	2050	16	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	9.555917305814	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGTGTGTGCTGGTTTTCAA	NA	False	NA	2	True	AATACA	-17	NA	22656451	22618298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_22618807_22619360_22619485_22621221_22621354_22622065_22622216_22623008_22623112_22632905_22632956_22636946_22637020_22638498_22638700_22639876_22639932_22646991_22647079_22647165_22647234_22648642_22648727_22650207_22650306_22650385_22650474_22652339_22652511_22656393
transcript_54379.nnic	chr8	-	2294	9	NNC	ENSMUSG00000037725.9	novel	2593	9	NA	NA	308	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_8	79.0283770236995	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTCATTGATTGACTTATT	NA	False	NA	-1	True	AATAAA	-26	NA	22675527	22658460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675405
transcript_54380.known	chr8	-	2593	9	FSM	ENSMUSG00000037725.9	ENSMUST00000046916.9	2593	9	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_6	17.1973835219198	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAGAAACAAATGAGAGTTA	NA	False	NA	NA	False	NA	NA	NA	22675835	22658175	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_22658991_22659728_22659964_22663277_22663348_22665016_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675699
transcript_54383.nic	chr8	-	1890	6	ISM	ENSMUSG00000037725.9	ENSMUST00000046916.9	2593	9	-17	6441	-17	0	5prime_fragment	FALSE	canonical	3	249	junction_3	10.2683981223947	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACTTTAGAAAATAGATACC	NA	False	NA	NA	False	NA	NA	NA	22675852	22664616	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_22665188_22665770_22665976_22666789_22667596_22667682_22667756_22669529_22669612_22675699
transcript_54384.known	chr8	+	3574	14	FSM	ENSMUSG00000031479.10	ENSMUST00000033866.9	3574	14	0	0	0	0	multi-exon	TRUE	canonical	3	316	junction_5	36.370219952707	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGGAATTTTTCTGTTTT	NA	False	NA	9	True	GATAAA	-22	NA	22682824	22710859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_22682983_22688913_22688983_22692289_22692361_22695682_22695798_22696792_22696883_22697872_22697960_22700284_22700318_22700404_22700483_22701553_22701689_22703510_22703577_22706527_22706593_22707140_22707226_22708227_22708305_22708414
transcript_5439.known	chr10	+	670	3	FSM	ENSMUSG00000112188.2	ENSMUST00000219583.2	670	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	1	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGTAAGTAATCTAGG	3220	False	NA	NA	False	NA	NA	NA	95567088	95575215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_95567365_95570676_95570791_95574935
transcript_54392.nic	chr8	+	578	6	ISM	ENSMUSG00000031479.10	ENSMUST00000033866.9	3574	14	-17	12929	-17	-10718	5prime_fragment	FALSE	canonical	3	316	junction_5	36.7564960245125	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAGAAACCGATAAAAAC	NA	False	NA	NA	False	AAGAAA	-4	NA	22682807	22697930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_22682983_22688913_22688983_22692289_22692361_22695682_22695798_22696792_22696883_22697872
transcript_54394.known	chr8	-	3430	7	FSM	ENSMUSG00000031482.10	ENSMUST00000033871.8	3430	7	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_4	26.1002341411379	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTGCTCTGGTCGTAGTGT	NA	False	NA	-6	True	NA	NA	NA	22888613	22865566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_22867998_22869299_22869459_22870853_22871024_22873222_22873361_22879829_22880089_22885728_22885844_22888455
transcript_54397.known	chr8	+	1515	7	FSM	ENSMUSG00000031533.5	ENSMUST00000033934.5	1515	7	0	0	0	0	multi-exon	FALSE	canonical	3	683	junction_2	48.7100263463968	490	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATCCTTGTGTAATTTGC	NA	False	NA	NA	False	NA	NA	NA	22901376	22919681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_22901601_22904731_22905020_22909742_22909902_22911325_22911467_22914362_22914437_22917763_22917908_22919196
transcript_54406.known	chr8	-	1402	4	FSM	ENSMUSG00000031534.16	ENSMUST00000033935.16	1402	4	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	20.3960780543711	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGCCTTGCATCATTTTG	NA	False	NA	-1	True	NA	NA	NA	22966898	22952630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_22953392_22961464_22961590_22963457_22963597_22966521
transcript_54413.known	chr8	-	1354	9	FSM	ENSMUSG00000008892.13	ENSMUST00000009036.11	1354	9	0	0	0	0	multi-exon	FALSE	canonical	3	2053	junction_8	117.712573669936	1848	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTTCATCTGACTTCTTAG	NA	False	NA	-11	True	AATAAA	-22	NA	23083774	23067101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077568_23077619_23078741_23078811_23083699
transcript_54423.known	chr8	-	1423	9	FSM	ENSMUSG00000008892.13	ENSMUST00000179233.2	1423	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	726.253560662528	280	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTTCTTAGTAGTGGTTGGT	NA	False	NA	0	True	AATAAA	-33	NA	23083829	23067090	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_23067619_23068058_23068117_23069007_23069159_23070355_23070584_23072098_23072152_23073599_23073753_23077565_23077619_23078741_23078811_23083699
transcript_54426.known	chr8	-	1201	14	FSM	ENSMUSG00000031536.7	ENSMUST00000033938.7	1201	14	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_8	16.1157058899497	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTCTTAACAAATGTGTTT	NA	False	NA	NA	False	AATAAA	-20	NA	23143434	23118141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_23118386_23120358_23120499_23121470_23121536_23127083_23127171_23129949_23130021_23130374_23130448_23130528_23130584_23132320_23132373_23135060_23135111_23137428_23137488_23138197_23138273_23140504_23140572_23143075_23143134_23143329
transcript_54432.known	chr8	-	3580	22	FSM	ENSMUSG00000031537.16	ENSMUST00000033939.13	3580	22	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	18.670796433355	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATGAGTCATGTCATTGA	NA	False	NA	0	True	NA	NA	NA	23196594	23149227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_23150476_23151417_23151509_23153705_23153834_23155504_23155653_23155827_23155928_23156006_23156057_23157239_23157350_23158699_23158762_23158960_23159113_23159622_23159747_23161646_23161762_23162338_23162534_23163378_23163509_23164978_23165087_23168805_23168931_23171678_23171769_23172741_23172831_23181073_23181144_23183830_23183949_23185178_23185274_23196097_23196221_23196485
transcript_54434.known	chr8	-	601	3	FSM	ENSMUSG00000031537.16	ENSMUST00000150214.2	601	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	54.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTTATTTTATTTTTTGA	NA	False	NA	NA	False	AATAAA	-36	NA	23196541	23192467	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_23192890_23196097_23196221_23196485
transcript_54435.known	chr8	-	3373	9	FSM	ENSMUSG00000031539.7	ENSMUST00000210656.2	3373	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	1.96452920568771	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTATGTCTGGTTACTGAG	NA	False	NA	-1	True	AATAAA	-18	NA	23295638	23277369	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_23279470_23280896_23281042_23281260_23281469_23282733_23282868_23283081_23283168_23287097_23287236_23289656_23289829_23293775_23294119_23295591
transcript_54437.known	chr8	+	2238	3	FSM	ENSMUSG00000063672.8	ENSMUST00000071588.8	2238	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATCATCCATAGACCAAATTG	NA	False	NA	NA	False	AATAAA	-44	NA	23643284	23648964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_23643986_23646216_23646387_23647597
transcript_54438.known	chr8	-	5518	13	FSM	ENSMUSG00000031545.7	ENSMUST00000167004.3	5518	13	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_11	21.3085793884894	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCTTTGATTTATTAAAAT	NA	False	NA	NA	False	AATAAA	-19	NA	23698362	23661280	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_23664677_23665355_23665436_23665523_23665653_23669430_23669517_23669784_23669841_23670116_23670233_23670648_23670743_23670875_23670966_23671788_23671864_23672678_23672980_23674544_23674615_23680731_23681709_23698314
transcript_54441.known	chr8	-	1349	8	FSM	ENSMUSG00000031546.7	ENSMUST00000033950.7	1349	8	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_1	23.2914103462707	208	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCAAATGTCTTTTTTT	NA	False	NA	-22	True	AAAACA	-3	NA	23727675	23716631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_23717192_23717264_23717356_23719431_23719521_23719621_23719720_23722620_23722735_23724769_23724857_23726995_23727116_23727485
transcript_54453.known	chr8	-	1792	6	FSM	ENSMUSG00000015341.18	ENSMUST00000051094.9	1792	6	0	0	0	0	multi-exon	TRUE	canonical	3	715	junction_5	234.329170185873	699	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTCTCTTGTCTTAGTCTA	NA	False	NA	-19	True	AATAAA	-1	NA	23747090	23731361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689_23746823_23747035
transcript_54454.known	chr8	-	1945	5	FSM	ENSMUSG00000015341.18	ENSMUST00000121783.7	1945	5	0	0	0	0	multi-exon	FALSE	canonical	3	1223	junction_2	41.2946727799119	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAAACCCTCTCTTGTCT	NA	False	NA	-26	True	AGTAAA	-10	NA	23747037	23731368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_23732648_23734746_23734810_23735878_23735981_23740264_23740418_23746689
transcript_54456.known	chr8	-	3985	22	FSM	ENSMUSG00000031555.16	ENSMUST00000084035.12	3985	22	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_2	31.0462313449736	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTGTCGTCCTCTTTATA	NA	False	NA	NA	False	AATAAA	-35	NA	25506938	25439626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_25441027_25445947_25446016_25452929_25453105_25454918_25455052_25456664_25456771_25457164_25457246_25460601_25460786_25463044_25463151_25468443_25468640_25469438_25469532_25471966_25472139_25480282_25480417_25481266_25481349_25482089_25482260_25483059_25483132_25485125_25485192_25486670_25486867_25487758_25487836_25493273_25493353_25494794_25494854_25496192_25496291_25506700
transcript_54457.known	chr8	+	1281	4	FSM	ENSMUSG00000031556.7	ENSMUST00000033961.7	1281	4	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_1	26.3185612575358	285	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTGCTGTGTGAGTATTTC	NA	False	NA	14	True	AATAAA	-14	NA	25507226	25513276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_25507609_25508081_25508170_25510454_25510571_25512581
transcript_54459.known	chr8	-	3463	12	FSM	ENSMUSG00000031557.17	ENSMUST00000128715.8	3463	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_11	42.7701912106826	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAAAACTTTTGTGTGTTT	9833	False	NA	20	True	NA	NA	NA	25592001	25530855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25591675
transcript_5446.nnic	chr10	+	1031	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	29	113	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	59	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTTTGGAGGACCGAA	NA	False	NA	NA	False	NA	NA	NA	95729333	95733232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_95729523_95729968_95730152_95732573
transcript_54460.known	chr8	-	5176	12	FSM	ENSMUSG00000031557.17	ENSMUST00000064883.14	5176	12	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_11	35.6008635794598	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTTGTGTGTTTTCCTG	9688	False	NA	NA	False	AATAAA	-19	NA	25592392	25529159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_25533055_25533640_25533719_25542375_25542440_25547309_25547381_25547748_25547818_25549149_25549297_25549849_25549991_25552390_25552489_25553953_25554003_25562014_25562072_25578357_25578522_25592049
transcript_54467.nic	chr8	-	1493	11	NIC	ENSMUSG00000065954.12	novel	6471	11	NA	NA	-15	-1596	combination_of_known_junctions	TRUE	canonical	3	13	junction_10	20.3492014585339	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTTCAGTATCAGCAGTTT	NA	False	NA	NA	False	NA	NA	NA	25730932	25649340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_25649837_25651210_25651332_25654404_25654512_25655476_25655638_25657377_25657422_25657530_25657608_25659212_25659339_25661287_25661341_25665157_25665282_25667949_25668011_25730809
transcript_54469.known	chr8	+	432	1	FSM	ENSMUSG00000074412.5	ENSMUST00000098864.5	432	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATTTGACAATGAAAACACA	NA	False	NA	NA	False	AAGAAA	-19	NA	25944288	25944720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_25944300_25944700
transcript_5447.nnic	chr10	+	1536	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	29	618	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	59	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGAAACTCAGAATATCAT	NA	False	NA	25	True	AATAAA	-18	NA	95729333	95733737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_95729523_95729968_95730152_95732573
transcript_54471.known	chr8	+	2834	10	FSM	ENSMUSG00000054823.18	ENSMUST00000155861.8	2834	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	41.093690002538	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATTAGTGCCGTTGTCAT	9002	False	NA	NA	False	ATTAAA	-20	NA	26091616	26167230	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_26092010_26130592_26131342_26138456_26138529_26139556_26139720_26149756_26149912_26152756_26153273_26156045_26156173_26163349_26163451_26165712_26165759_26166718
transcript_54472.known	chr8	+	1539	8	FSM	ENSMUSG00000031570.18	ENSMUST00000139836.8	1539	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_6	28.6997120087947	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210090	26214914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26213057_26213141_26214106
transcript_54473.known	chr8	+	1419	7	FSM	ENSMUSG00000031570.18	ENSMUST00000124764.8	1419	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	20.3141986469235	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210087	26214914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_26210179_26210293_26210363_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
transcript_54474.known	chr8	+	1483	7	FSM	ENSMUSG00000031570.18	ENSMUST00000068916.16	1483	7	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	15.9269164205337	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210063	26214914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26211814_26212456_26212628_26214106
transcript_54477.known	chr8	+	2099	6	FSM	ENSMUSG00000031570.18	ENSMUST00000133117.8	2099	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_2	15.0545674132471	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATACTGTGTGTGTGTGAGT	NA	False	NA	17	True	AATAAA	-29	NA	26210090	26214914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_26210179_26210293_26210403_26210581_26210673_26211200_26211265_26211688_26212628_26214106
transcript_54478.known	chr8	+	819	5	FSM	ENSMUSG00000031570.18	ENSMUST00000209843.2	819	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	23.4840371316348	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTGTGATTCCCACTTA	NA	False	NA	NA	False	NA	NA	NA	26210114	26212219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_26210179_26210293_26210363_26210581_26210673_26211200_26211265_26211688
transcript_5448.known	chr10	+	858	3	FSM	ENSMUSG00000112400.2	ENSMUST00000218392.2	858	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	58.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAGTGGAAGTGGGTAGG	NA	False	NA	NA	False	NA	NA	NA	95729304	95733119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_95729528_95730062_95730152_95732573
transcript_54480.known	chr8	-	4876	5	FSM	ENSMUSG00000037316.10	ENSMUST00000038498.10	4876	5	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_2	10.356157588604	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCTGTTTTCTCTCTAGCA	NA	False	NA	NA	False	AATAAA	-25	NA	26275315	26254565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_26258438_26259309_26259565_26261106_26261362_26267450_26267556_26274926
transcript_54486.known	chr8	-	2266	16	FSM	ENSMUSG00000061313.11	ENSMUST00000211688.4	2266	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	17.3837727652991	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTTCCTTCTCAGCTAC	NA	False	NA	NA	False	NA	NA	NA	26244624	26217344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_26217391_26217656_26217765_26222989_26223150_26224742_26224914_26225035_26225139_26228241_26228335_26229489_26229613_26231313_26231382_26231627_26231837_26236844_26236981_26238564_26238655_26239753_26239875_26240729_26240820_26242126_26242318_26242974_26243201_26244293
transcript_54487.nic	chr8	-	884	2	ISM	ENSMUSG00000061313.11	ENSMUST00000211009.3	2509	13	-20	18185	-20	-9	5prime_fragment	FALSE	canonical	1	18	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGATGAGTGAAAAAAAAAAA	NA	False	NA	NA	False	ACTAAA	-41	NA	26244461	26242484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_26243201_26244293
transcript_54488.known	chr8	-	2506	2	FSM	ENSMUSG00000037316.10	ENSMUST00000209948.2	2506	2	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAGAAAAAGAAAAGA	NA	False	NA	NA	False	NA	NA	NA	26275226	26265349	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_26267556_26274926
transcript_54489.known	chr8	-	1836	1	FSM	ENSMUSG00000061313.11	ENSMUST00000209419.3	1836	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAACCTAGGA	NA	False	NA	NA	False	NA	NA	NA	26244311	26242475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_26242500_26244300
transcript_54490.known	chr8	+	2322	2	FSM	ENSMUSG00000091514.3	ENSMUST00000167899.3	2322	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCATGAGTTAGACTTCAA	NA	False	NA	NA	False	AATAAA	-19	NA	26244507	26259732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_26244748_26257650
transcript_54491.nnic	chr8	+	1326	5	NNC	ENSMUSG00000037296.8	novel	2663	4	NA	NA	1	408	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_4	192.3856803403	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAATGGAGTTTCTGGTGG	8441	False	NA	19	True	AATAAA	-22	NA	26275316	26292560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_26275746_26282184_26282254_26283704_26283821_26286980_26287088_26291955
transcript_54492.known	chr8	+	2663	4	FSM	ENSMUSG00000037296.8	ENSMUST00000038421.8	2663	4	0	0	0	0	multi-exon	FALSE	canonical	3	365	junction_2	35.9660333586504	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAACAAGAGAAGACACAT	8440	False	NA	NA	False	NA	NA	NA	26275315	26294003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_26275746_26282184_26282254_26283704_26283821_26291955
transcript_545.known	chr1	-	3378	8	FSM	ENSMUSG00000001143.14	ENSMUST00000125304.8	3378	8	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	29.2707278728098	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTTCTTGTCAGAAGTG	NA	False	NA	NA	False	AATAGA	-13	NA	36484352	36461145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_36463585_36463918_36464039_36467182_36467298_36467380_36467543_36477830_36477914_36478689_36478808_36482571_36482691_36484130
transcript_5450.nnic	chr10	+	1055	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	36	113	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	66.5	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTTTGGAGGACCGAA	NA	False	NA	NA	False	NA	NA	NA	95729340	95733232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_95729523_95729937_95730152_95732573
transcript_54504.known	chr8	-	3307	16	FSM	ENSMUSG00000031575.19	ENSMUST00000068892.15	3307	16	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_15	813.355748325008	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCCCAATGTTTGAATGAC	NA	False	NA	NA	False	NA	NA	NA	26330815	26306023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330609
transcript_54505.known	chr8	-	2337	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110610.8	2337	16	0	0	0	0	multi-exon	TRUE	canonical	3	3119	junction_12	186.058007680998	1385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTACTTGGCTTCACTGG	NA	False	NA	-12	True	AATAAA	-19	NA	26337722	26306903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26337606
transcript_5452.nnic	chr10	+	930	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	36	113	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	59.5	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTTTGGAGGACCGAA	NA	False	NA	NA	False	NA	NA	NA	95729340	95733232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_95729523_95730062_95730152_95732573
transcript_5453.nnic	chr10	+	1435	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	36	618	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	59.5	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGAAACTCAGAATATCAT	NA	False	NA	25	True	AATAAA	-18	NA	95729340	95733737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_95729523_95730062_95730152_95732573
transcript_5454.nnic	chr10	+	955	3	NNC	ENSMUSG00000112400.2	novel	858	3	NA	NA	43	113	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	65	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAGTTTTGGAGGACCGAA	NA	False	NA	NA	False	NA	NA	NA	95729347	95733232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_95729555_95730062_95730152_95732573
transcript_54542.known	chr8	-	2234	15	FSM	ENSMUSG00000031575.19	ENSMUST00000166078.9	2234	15	0	0	0	0	multi-exon	FALSE	canonical	3	3119	junction_12	186.608342443171	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGCTTCACTGGAAGTGA	NA	False	NA	-6	True	AATAAA	-25	NA	26330110	26306897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039
transcript_54543.known	chr8	-	2300	16	FSM	ENSMUSG00000031575.19	ENSMUST00000110609.8	2300	16	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_15	868.905733283728	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAGCTTGTATGGTACTTG	NA	False	NA	-22	True	AATAAA	-9	NA	26330485	26306913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_26307537_26307631_26307692_26308573_26308673_26309653_26309747_26312722_26312917_26313166_26313335_26317201_26317420_26318793_26318888_26321300_26321377_26322667_26322764_26323778_26323875_26324987_26325083_26326027_26326117_26329770_26329917_26330039_26330104_26330396
transcript_54548.known	chr8	+	1446	8	FSM	ENSMUSG00000031576.17	ENSMUST00000120653.8	1446	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	3.10365156891435	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTAAAGTTCATTGCTCTCT	NA	False	NA	NA	False	AATAAA	-20	NA	26401707	26427961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_26401778_26403611_26403837_26408316_26408504_26409611_26409690_26411447_26411588_26422267_26422463_26424432_26424546_26427523
transcript_54550.nnic	chr8	-	2962	6	NNC	ENSMUSG00000037251.6	novel	3613	5	NA	NA	8	-821	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	45.3431361950185	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCTGTGGTGCTGGCATCC	NA	False	NA	NA	False	AATAAA	-15	NA	26484153	26471452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_26473673_26476273_26476561_26477522_26477669_26479193_26479372_26479677_26479770_26484114
transcript_54553.known	chr8	-	3613	5	FSM	ENSMUSG00000037251.6	ENSMUST00000061850.5	3613	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	28.3681159050086	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTAATGGAATTATTCAGC	NA	False	NA	NA	False	NA	NA	NA	26484161	26470631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_26473673_26476273_26476561_26477522_26477669_26479677_26479770_26484114
transcript_54558.known	chr8	-	1930	9	FSM	ENSMUSG00000015994.11	ENSMUST00000016138.11	1930	9	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_5	99.1573875210516	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAATTGGTCCTGTTTTTCT	NA	False	NA	NA	False	ATTAAA	-5	NA	26505678	26488749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_26489593_26489796_26489969_26490997_26491061_26494443_26494593_26497214_26497342_26499692_26499798_26501117_26501233_26503497_26503584_26505408
transcript_54559.known	chr8	-	12836	22	FSM	ENSMUSG00000037234.18	ENSMUST00000037182.14	12836	22	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_6	10.5632744184703	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGAGCTCGTTTTTTCTGCT	NA	False	NA	NA	False	AATAAA	-22	NA	26609252	26511448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_26522059_26524958_26525031_26525160_26525266_26528049_26528151_26529696_26529780_26534267_26534303_26538279_26538368_26549267_26549409_26551404_26551475_26557877_26557966_26558586_26558698_26560101_26560304_26561085_26561227_26562284_26562449_26563627_26563712_26564895_26564959_26572541_26572610_26578087_26578221_26583684_26583736_26585785_26585859_26600763_26600850_26608985
transcript_54563.known	chr8	+	1000	8	FSM	ENSMUSG00000013878.19	ENSMUST00000209707.2	1000	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	23.7469654344916	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTTGTTTGGAATTCTG	NA	False	NA	NA	False	NA	NA	NA	26609415	26630995	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_26609629_26610472_26610592_26613874_26614016_26615931_26616008_26619074_26619184_26625656_26625731_26629007_26629119_26630838
transcript_54565.known	chr8	+	1026	7	FSM	ENSMUSG00000013878.19	ENSMUST00000153528.8	1026	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	26.5560204515327	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACAAAAGGATCCATGGCA	NA	False	NA	NA	False	TATAAA	-4	NA	26609410	26631152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_26609629_26610467_26610592_26615931_26616008_26619074_26619184_26625656_26625731_26629007_26629119_26630838
transcript_54566.known	chr8	+	2295	3	FSM	ENSMUSG00000037214.13	ENSMUST00000036807.13	2295	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	13	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTGTGGCCCTGCTTTTTT	NA	False	NA	7	True	ATTAAA	-18	NA	26648168	26654179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_26648550_26650802_26650999_26652461
transcript_54569.known	chr8	+	4838	12	FSM	ENSMUSG00000031483.9	ENSMUST00000033873.9	4838	12	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_9	30.3309568287708	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCATGTTTTTCATTGTTGT	NA	False	NA	NA	False	NA	NA	NA	27513826	27530356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_27513935_27515084_27515207_27517196_27517279_27518926_27518974_27519366_27519429_27519571_27519698_27521725_27521800_27521954_27522014_27522261_27522354_27523413_27523504_27526041_27526122_27526460
transcript_5457.nic	chr10	+	1449	8	NIC	ENSMUSG00000019943.11	novel	1249	4	NA	NA	232	181	combination_of_known_junctions	FALSE	canonical	3	223	junction_6	12.7022414862697	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAAAAATCCGTGTTACAGG	NA	False	NA	NA	False	AAGAAA	-18	NA	98750499	98830610	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_98750656_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923_98827065_98829728_98829768_98830507
transcript_54576.nnic	chr8	+	2577	9	NNC	ENSMUSG00000031485.16	novel	3603	8	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	86	junction_8	57.907253431673	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGCGTGTGGGTGTTT	NA	False	NA	25	True	AATAAA	-17	NA	27532577	27546160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313_27544055_27545085
transcript_54577.known	chr8	+	3603	8	FSM	ENSMUSG00000031485.16	ENSMUST00000033875.10	3603	8	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	11.5881713089561	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTATGCGTGTGGGTGTTT	NA	False	NA	25	True	AATAAA	-17	NA	27532582	27546160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201_27539337_27541286_27541430_27542263_27542363_27543313
transcript_5458.known	chr10	+	7130	21	FSM	ENSMUSG00000019943.11	ENSMUST00000020107.8	7130	21	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	42.6978922196401	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGGACTGAACTTTTTGAC	NA	False	NA	12	True	AATAAA	-24	NA	98751013	98862005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_98751234_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923_98827065_98829728_98829768_98830507_98830670_98832629_98832845_98835600_98835844_98837149_98837392_98839002_98839241_98845265_98845446_98846063_98846152_98846535_98846643_98850320_98850513_98850745_98850960_98851345_98851558_98852784_98852893_98854576_98854760_98858669
transcript_54583.known	chr8	+	5767	5	FSM	ENSMUSG00000031485.16	ENSMUST00000209525.2	5767	5	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_4	15.0416089564913	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGGTGTGATGAGTGAAT	NA	False	NA	13	True	ATTAAA	-15	NA	27532588	27544595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_27532742_27535055_27535164_27535425_27535462_27535951_27536028_27539201
transcript_54587.known	chr8	-	1899	4	FSM	ENSMUSG00000031487.6	ENSMUST00000033877.6	1899	4	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	8.9938250421547	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAAACCAGAGCTTTTAAA	NA	False	NA	-26	True	ATTAAA	-35	NA	27618708	27613391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_27614649_27615847_27616170_27617487_27617548_27618448
transcript_54589.known	chr8	-	620	4	FSM	ENSMUSG00000031487.6	ENSMUST00000210230.2	620	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	38.1255236758206	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGCATCCCTTGCCCATCAT	NA	False	NA	NA	False	NA	NA	NA	27618641	27614527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_27614649_27615847_27616170_27617487_27617548_27618524
transcript_5459.nic	chr10	+	1302	6	NIC	ENSMUSG00000019943.11	novel	1249	4	NA	NA	232	2733	combination_of_known_junctions	FALSE	canonical	3	240	junction_3	8.61626369141521	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAAGTAGGTGTGGCGGTT	NA	False	NA	NA	False	NA	NA	NA	98750499	98827059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_98750656_98804555_98804987_98815565_98815764_98822752_98823008_98823102_98823229_98826923
transcript_54591.nic	chr8	-	1247	3	ISM	ENSMUSG00000031487.6	ENSMUST00000033877.6	1899	4	-40	1891	-40	153	5prime_fragment	FALSE	canonical	3	93	junction_2	1	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCACTAGTATACTTTAAA	NA	False	NA	NA	False	NA	NA	NA	27618748	27615282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_27616170_27617487_27617548_27618448
transcript_54593.known	chr8	-	3217	5	FSM	ENSMUSG00000031488.15	ENSMUST00000033878.14	3217	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	8.6421930087218	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAACAGAGAGTCGGTCTCTC	NA	False	NA	NA	False	TTTAAA	-4	NA	27664674	27631985	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_27633423_27640722_27640832_27644173_27644964_27646254_27646698_27664236
transcript_54599.nnic	chr8	-	1413	10	NNC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_6	39.8580815728337	19	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27713879	27687486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689953_27690260_27690373_27690749_27690932_27692399_27692492_27713715
transcript_5460.known	chr10	+	2862	12	FSM	ENSMUSG00000019952.16	ENSMUST00000020113.15	2862	12	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_11	10.2158522093674	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ATAAAAAAAAATGAAATGTA	NA	False	NA	NA	False	NA	NA	NA	98942897	99033850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_98943086_98943653_98943739_98960692_98960865_98965344_98965525_98980096_98980205_98980340_98980457_98988662_98988797_98990930_98991000_98992063_98992214_99000730_99000812_99028643_99028860_99032487
transcript_54600.nic	chr8	-	1436	10	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	28.2016547977833	44	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27713879	27687486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692492_27713715
transcript_54601.nic	chr8	-	1658	10	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	-57	0	combination_of_known_junctions	FALSE	canonical	3	68	junction_6	20.0831604418561	81	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27713913	27687486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_27687710_27687955_27688099_27688420_27688587_27689294_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692680_27713715
transcript_54607.nic	chr8	-	2366	9	NIC	ENSMUSG00000039720.8	novel	1356	9	NA	NA	-57	0	intron_retention	FALSE	canonical	3	68	junction_5	19.8899314981224	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATTGCTATGTTCTCCTT	NA	False	NA	-7	True	AATAAA	-17	NA	27713913	27687486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_27687710_27687955_27688099_27688420_27689446_27689537_27689631_27689865_27689976_27690260_27690373_27690749_27690932_27692399_27692680_27713715
transcript_54618.nnic	chr8	-	1118	3	NNC	ENSMUSG00000031489.16	novel	2795	4	NA	NA	898	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_2	15.5	5	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27717624	27715803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_27716411_27716753_27716925_27717284
transcript_54619.nic	chr8	-	1205	3	NIC	ENSMUSG00000031489.16	novel	1864	3	NA	NA	898	0	combination_of_known_junctions	FALSE	canonical	3	20	junction_2	26.5	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGTCCCCTGCTCGCCTT	NA	False	NA	-12	True	AATAAA	-15	NA	27717624	27715803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_27716498_27716753_27716925_27717284
transcript_5462.known	chr10	+	1799	11	FSM	ENSMUSG00000019952.16	ENSMUST00000159228.8	1799	11	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_9	25.0896392959325	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACCTCTAGATTTTATTGTT	NA	False	NA	NA	False	NA	NA	NA	98942943	99032914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_98943086_98943653_98943739_98960692_98960865_98965344_98965525_98980096_98980205_98980340_98980457_98988662_98988797_98990930_98991000_98992063_98992214_99028643_99028860_99032487
transcript_54625.known	chr8	+	1997	3	FSM	ENSMUSG00000031490.7	ENSMUST00000033880.7	1997	3	0	0	0	0	multi-exon	FALSE	canonical	3	14377	junction_1	319.5	6516	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGATTGGTTCCCAGTGG	NA	False	NA	15	True	NA	NA	NA	27750356	27766702	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_27750579_27763350_27763531_27765107
transcript_54629.known	chr8	+	1524	3	FSM	ENSMUSG00000039661.15	ENSMUST00000161713.2	1524	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTCTTGGCGTTATTAACA	NA	False	NA	NA	False	AATAAA	-19	NA	31581677	31587074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_31582129_31584115_31584331_31586216
transcript_54630.known	chr8	+	1726	6	FSM	ENSMUSG00000039328.12	ENSMUST00000217278.2	1726	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	3.55527776692624	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAATTAAATTTAATAACA	NA	False	NA	-23	True	TTTAAA	-1	NA	31601857	31619661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_31602201_31608458_31608616_31614879_31614926_31615193_31615236_31618279_31618363_31618606
transcript_54631.known	chr8	-	104	1	FSM	ENSMUSG00000088252.3	ENSMUST00000157627.3	104	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAACTTAGGAGGATCCTCC	NA	False	NA	-12	True	NA	NA	NA	31639995	31639891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_31639900_31640000
transcript_54632.known	chr8	-	1902	10	FSM	ENSMUSG00000031578.6	ENSMUST00000033983.6	1902	10	0	0	0	0	multi-exon	FALSE	canonical	3	742	junction_2	38.8285245790727	446	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGGTCTTGAGAATTCTG	NA	False	NA	-2	True	TATAAA	-20	NA	31658792	31649490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_31650606_31650786_31650853_31651749_31651864_31653058_31653134_31654745_31654801_31656089_31656242_31656401_31656467_31656550_31656661_31656737_31656788_31658692
transcript_5464.nnic	chr10	+	1275	2	Genic_Genomic	ENSMUSG00000091101.3	novel	927	1	NA	NA	-997	270	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTATTCTAGAGTCATAA	NA	False	NA	NA	False	AATAAA	-18	NA	100175700	100177894	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr10_+_100175773_100176691
transcript_54642.known	chr8	+	3133	7	FSM	ENSMUSG00000031577.11	ENSMUST00000209851.2	3133	7	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	19.2476549798208	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAAAAAAAAAATTTGG	NA	False	NA	NA	False	NA	NA	NA	31640342	31651082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_31641528_31643536_31643724_31644241_31644335_31645541_31645730_31645805_31645950_31648620_31648784_31649909
transcript_54644.known	chr8	+	3183	5	FSM	ENSMUSG00000046152.17	ENSMUST00000066173.12	3183	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	11.5758369027902	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAAATGTATTCTTTGGAG	NA	False	NA	10	True	AATAAA	-23	NA	31677358	31751511	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_31677491_31684981_31685318_31691237_31691533_31725622_31726459_31749927
transcript_54645.known	chr8	+	2962	4	FSM	ENSMUSG00000046152.17	ENSMUST00000161788.8	2962	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	13.29995822884	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCACTGTCGCAGACTCTC	NA	False	NA	6	True	AATAAA	-16	NA	31677359	31727822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_31677491_31684981_31685318_31691237_31691533_31725622
transcript_54646.known	chr8	+	2327	4	FSM	ENSMUSG00000046152.17	ENSMUST00000110527.9	2327	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	19.3964487013015	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTTTTTCAAGAAATGTATT	NA	False	NA	2	True	AATAAA	-15	NA	31677370	31751503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_31677491_31684981_31685318_31691237_31691533_31749927
transcript_54647.known	chr8	+	1469	7	FSM	ENSMUSG00000009630.11	ENSMUST00000009774.11	1469	7	0	0	0	0	multi-exon	FALSE	canonical	3	909	junction_3	33.4398298772919	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTTCTTGACTGGTTAAG	8865	False	NA	NA	False	NA	NA	NA	34089652	34109469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_34090047_34100682_34100893_34101775_34101950_34105477_34105568_34105693_34105856_34107054_34107174_34109149
transcript_54649.known	chr8	-	2808	8	FSM	ENSMUSG00000052906.8	ENSMUST00000095349.6	2808	8	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_7	19.9335631229219	59	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGGAAGTCAGCTTGTGAAT	4670	False	NA	NA	False	AATAAA	-21	NA	34131995	34109613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_34111729_34113189_34113265_34116351_34116394_34119264_34119403_34123529_34123656_34125316_34125388_34128507_34128631_34131877
transcript_5465.nnic	chr10	+	1185	2	Genic_Genomic	ENSMUSG00000091552.3	novel	883	1	NA	NA	-6099	206	multi-exon	FALSE	canonical	2	11	junction_1	0	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATTTTGTGGATAAATAG	NA	False	NA	NA	False	AATACA	-16	NA	100185997	100193185	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr10_+_100186070_100192072
transcript_54653.known	chr8	+	2673	13	FSM	ENSMUSG00000031584.17	ENSMUST00000033992.9	2673	13	0	0	0	0	multi-exon	FALSE	canonical	3	1474	junction_4	147.314360580811	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCTGTCAGTGTATTTTC	402	False	NA	14	True	TATAAA	-17	NA	34143265	34188191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_34143808_34159180_34159208_34159920_34160010_34161550_34161621_34164114_34164263_34170290_34170346_34171492_34171593_34172620_34172708_34175571_34175731_34179368_34179481_34183826_34183959_34185026_34185161_34187173
transcript_54655.known	chr8	+	1634	8	FSM	ENSMUSG00000031585.14	ENSMUST00000170705.8	1634	8	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_1	317.681974204855	225	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTTAATGCTTTGTT	5025	False	NA	9	True	AATAAA	-13	NA	34221860	34267192	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_34222017_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
transcript_54659.known	chr8	+	1566	8	FSM	ENSMUSG00000031585.14	ENSMUST00000167264.8	1566	8	0	0	0	0	multi-exon	FALSE	canonical	3	804	junction_1	195.585463338633	626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGTTAATGCTTTGTT	5234	False	NA	9	True	AATAAA	-13	NA	34222069	34267192	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_34222158_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
transcript_5466.nnic	chr10	+	1270	2	Genic_Genomic	ENSMUSG00000091552.3	novel	883	1	NA	NA	-6099	291	multi-exon	FALSE	canonical	2	11	junction_1	0	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGTATTCTAGAGTCATAA	NA	False	NA	NA	False	AATAAA	-18	NA	100185997	100193270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr10_+_100186070_100192072
transcript_54661.known	chr8	+	1664	8	FSM	ENSMUSG00000031585.14	ENSMUST00000171010.8	1664	8	0	0	0	0	multi-exon	FALSE	canonical	2	96	junction_1	434.890697034723	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGCTTTGTTTTAAAAAGC	5531	False	NA	18	True	AATAAA	-22	NA	34222366	34267201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_34222544_34225761_34225935_34242468_34242561_34245879_34245988_34248583_34248767_34252037_34252132_34265971_34266088_34266480
transcript_54666.nnic	chr8	+	737	4	NNC	ENSMUSG00000031585.14	novel	471	3	NA	NA	-164	187	at_least_one_novel_splicesite	FALSE	non_canonical	1	30	junction_1	622.089132591857	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGTTTAAGAAGTTAGGAA	NA	False	NA	18	True	AATAAA	-15	NA	34254865	34266993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_34254945_34255029_34255059_34265971_34266088_34266480
transcript_54672.known	chr8	-	1385	9	FSM	ENSMUSG00000031586.18	ENSMUST00000182987.8	1385	9	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_1	473.977962963469	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTCCCTCTGCCTGGCCC	NA	False	NA	NA	False	NA	NA	NA	34419844	34273808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_34274215_34279419_34279524_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
transcript_54673.known	chr8	-	2466	8	FSM	ENSMUSG00000031586.18	ENSMUST00000053251.12	2466	8	0	0	0	0	multi-exon	FALSE	canonical	3	696	junction_1	308.820996959833	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGATTTGTCTGACAACTT	NA	False	NA	NA	False	AATAAA	-19	NA	34419891	34272670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_34274215_34285109_34285179_34296744_34296879_34324331_34324483_34353013_34353077_34354360_34354400_34356354_34356433_34419503
transcript_54678.known	chr8	-	1249	7	FSM	ENSMUSG00000031516.12	ENSMUST00000033913.11	1249	7	0	0	0	0	multi-exon	FALSE	canonical	3	293	junction_6	39.9485780584101	267	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATAGCTGCCTCAATTTCC	NA	False	NA	-3	True	AATAAA	-28	NA	34575950	34557576	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_34557997_34559664_34559808_34560782_34560831_34562037_34562127_34564342_34564449_34573495_34573561_34575572
transcript_5468.known	chr10	-	2564	7	FSM	ENSMUSG00000046567.11	ENSMUST00000054471.10	2564	7	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_5	5.07991688470939	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGTGAAATAAATCCATGAA	NA	False	NA	69	True	AATAAA	-25	NA	100425257	100408126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_100409623_100411578_100411749_100413022_100413221_100414176_100414294_100419775_100419872_100422052_100422171_100424888
transcript_54682.known	chr8	-	736	1	FSM	ENSMUSG00000063412.5	ENSMUST00000080152.5	736	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1182	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTGTATTTTCAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	34578891	34578155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_34578200_34578900
transcript_54683.known	chr8	-	2879	4	FSM	ENSMUSG00000031513.9	ENSMUST00000033910.9	2879	4	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_3	12.9614813968157	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTAGCTTGTGGGTGTTTT	8786	False	NA	-4	True	AATAAA	-16	NA	34614187	34602725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_34604993_34606007_34606195_34607914_34607991_34613838
transcript_54689.known	chr8	+	1860	6	FSM	ENSMUSG00000031532.8	ENSMUST00000033933.8	1860	6	0	0	0	0	multi-exon	FALSE	canonical	3	207	junction_1	37.2633868562695	114	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTCTTGTTCTTTGTACT	NA	False	NA	9	True	AATAAA	-16	NA	34621729	34637975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_34621991_34628348_34628528_34632294_34632695_34634872_34635012_34635610_34635766_34637249
transcript_54691.known	chr8	+	418	4	FSM	ENSMUSG00000100605.2	ENSMUST00000188318.2	418	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	5.71547606649408	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCACTTACTCTTTCTTTT	NA	False	NA	NA	False	ATTAAA	-41	NA	34684012	34693299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_34684111_34688020_34688119_34691015_34691123_34693184
transcript_54693.known	chr8	-	5079	7	FSM	ENSMUSG00000031527.8	ENSMUST00000033927.8	5079	7	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_2	28.274939827031	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTGCCTGCGTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	35962687	35932406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_35936525_35941550_35941666_35943612_35943723_35945713_35945798_35949669_35949881_35958354_35958534_35962425
transcript_54695.known	chr8	+	961	5	FSM	ENSMUSG00000109714.2	ENSMUST00000210289.2	961	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.06155281280883	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTACCCTTTGCTCT	2925	False	NA	NA	False	AATGAA	-8	NA	36191535	36201922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_36191623_36191732_36191845_36192585_36192672_36198015_36198167_36201397
transcript_54697.known	chr8	+	1405	3	FSM	ENSMUSG00000109704.2	ENSMUST00000211253.2	1405	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTGCCTTGGTCATGGTGT	NA	False	NA	NA	False	NA	NA	NA	36626632	36628742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_36626734_36626900_36627001_36627538
transcript_54699.known	chr8	-	616	3	FSM	ENSMUSG00000031523.17	ENSMUST00000145245.2	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	11.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGTAAAAAAAAAAAATGATT	NA	False	NA	NA	False	NA	NA	NA	37081028	37060384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_37060613_37066522_37066595_37080712
transcript_547.known	chr1	-	664	4	FSM	ENSMUSG00000079610.10	ENSMUST00000194894.4	664	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	19.6015872373189	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGTACACAGACTAGCTCT	7014	False	NA	NA	False	NA	NA	NA	36586312	36578440	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_36578616_36580904_36581144_36581842_36581947_36586166
transcript_54701.known	chr8	+	2811	11	FSM	ENSMUSG00000118664.1	ENSMUST00000239509.1	2811	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	62.7792959501777	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAACACGTCAAATCTCA	NA	False	NA	NA	False	ATTAAA	-9	NA	39472998	39619367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39564078_39564169_39593682_39593747_39597896_39597972_39610300_39610392_39614047_39614112_39617866
transcript_54703.known	chr8	+	2747	10	FSM	ENSMUSG00000118664.1	ENSMUST00000239508.1	2747	10	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_1	15.2153269054433	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAAACACGTCAAATCTCA	NA	False	NA	NA	False	ATTAAA	-9	NA	39472998	39619367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39564078_39564169_39593682_39593747_39597896_39597972_39610300_39610392_39617866
transcript_54707.nic	chr8	+	1469	9	NIC	ENSMUSG00000118664.1	novel	2747	10	NA	NA	-24	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_5	47.9785108147387	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCATGTTTTAGAATTGTGT	NA	False	NA	29	True	AATAAA	-19	NA	39472974	39618155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39593682_39593747_39597896_39597972_39610300_39610392_39617866
transcript_54708.nic	chr8	+	1647	9	NIC	ENSMUSG00000118664.1	novel	2747	10	NA	NA	-24	178	combination_of_known_junctions	FALSE	canonical	3	22	junction_5	47.9785108147387	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAAAGTGTTTTGTTATTCT	NA	False	NA	16	True	TATAAA	-16	NA	39472974	39618333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_39473355_39513668_39513839_39530344_39530463_39534775_39534917_39538529_39538671_39593682_39593747_39597896_39597972_39610300_39610392_39617866
transcript_54711.known	chr8	+	6002	12	FSM	ENSMUSG00000031600.12	ENSMUST00000098817.4	6002	12	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_7	12.6869491086687	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCCTTGGTTGTGGTGTC	NA	False	NA	12	True	NA	NA	NA	40964823	41003798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_40965275_40979967_40980043_40981358_40981474_40982149_40982251_40989910_40990137_40992350_40992422_40993719_40993848_40993929_40993989_40994065_40994135_40996850_40996995_40997984_40998066_40999316
transcript_54712.nnic	chr8	+	1731	11	NIC	ENSMUSG00000031600.12	novel	6002	12	NA	NA	-12	0	combination_of_known_splicesites	FALSE	canonical	2	13	junction_8	65.3988532009545	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAATTCTAGCTAATTTTTAA	NA	False	NA	13	True	ATTAAA	-13	NA	40964811	40999584	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_40965275_40979967_40980043_40981358_40981474_40982149_40982251_40989910_40990137_40992350_40992422_40993719_40993848_40993929_40993989_40996850_40996995_40997984_40998066_40999316
transcript_54715.nnic	chr8	-	2640	7	NNC	ENSMUSG00000031601.17	novel	2615	7	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	195.288177374418	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGTGACTGATGGCTT	NA	False	NA	-1	True	AATAAA	-23	NA	40964370	40945580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964130
transcript_54716.known	chr8	-	2615	7	FSM	ENSMUSG00000031601.17	ENSMUST00000034012.10	2615	7	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_2	67.4388612003495	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGTTGTGACTGATGGCTT	NA	False	NA	-1	True	AATAAA	-23	NA	40964795	40945580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_40947157_40948845_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
transcript_54719.nic	chr8	-	1238	6	ISM	ENSMUSG00000031601.17	ENSMUST00000034012.10	2615	7	9	3057	9	0	5prime_fragment	FALSE	canonical	3	422	junction_1	71.4915379607964	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACATTATTTATTCT	NA	False	NA	NA	False	AATAAA	-14	NA	40964786	40948637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_40948957_40952335_40952481_40953792_40953955_40960495_40960690_40963055_40963268_40964580
transcript_54721.nnic	chr8	-	783	3	NNC	ENSMUSG00000031601.17	novel	726	3	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	310	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACTTTAGTTATAGAGA	NA	False	NA	-4	True	AATAAA	-15	NA	40964370	40960358	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_40960690_40963055_40963268_40964130
transcript_54722.known	chr8	-	726	3	FSM	ENSMUSG00000031601.17	ENSMUST00000146280.2	726	3	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_2	66.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGACTTTAGTTATAGAGA	NA	False	NA	-4	True	AATAAA	-15	NA	40964763	40960358	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_40960690_40963055_40963268_40964580
transcript_54723.known	chr8	-	2488	14	FSM	ENSMUSG00000039431.17	ENSMUST00000048898.17	2488	14	0	0	0	0	multi-exon	TRUE	canonical	3	263	junction_13	15.5985130530912	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAAATGTAATCATTTTAT	NA	False	NA	38	True	AATAAA	-23	NA	41087819	41004141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_41004955_41007311_41007439_41008816_41008958_41011196_41011398_41013897_41013948_41015610_41015737_41017000_41017111_41034455_41034589_41040090_41040226_41043452_41043582_41050325_41050484_41059801_41059965_41061936_41062060_41087740
transcript_54728.known	chr8	-	6548	14	FSM	ENSMUSG00000045636.17	ENSMUST00000059115.13	6548	14	0	0	0	0	multi-exon	TRUE	canonical	3	90	junction_13	16.5128603280297	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCTTGAGTCCTTGCTTTT	NA	False	NA	-2	True	TATAAA	-45	NA	41586763	41443950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_41446671_41447584_41447683_41451383_41451501_41452472_41452569_41452679_41452754_41453797_41453904_41455341_41455557_41468424_41468492_41475416_41475632_41501084_41501124_41503021_41503154_41529268_41529465_41535650_41537878_41586517
transcript_54729.nnic	chr8	-	1002	6	NNC	ENSMUSG00000031594.10	novel	1120	8	NA	NA	5748	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_3	3.55527776692624	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATGGCCATGGTAATTGT	NA	False	NA	NA	False	AATAAA	-33	NA	41662442	41644470	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_41644718_41649994_41650183_41650350_41650440_41652688_41652787_41653481_41653642_41662222
transcript_54730.known	chr8	-	1120	8	FSM	ENSMUSG00000031594.10	ENSMUST00000034003.5	1120	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	5.86584719075652	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATGGCCATGGTAATTGT	NA	False	NA	NA	False	AATAAA	-33	NA	41668193	41644470	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_41644718_41649994_41650183_41650350_41650440_41652688_41652787_41653481_41653642_41662733_41662921_41663463_41663544_41668122
transcript_54731.nic	chr8	+	522	3	ISM	ENSMUSG00000031592.11	ENSMUST00000210862.2	691	4	-169	1437	-156	-1437	5prime_fragment	FALSE	canonical	3	147	junction_1	7.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAGAATAAGAAAAAGTT	NA	False	NA	NA	False	AATAGA	-7	NA	41692632	41710866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_41693001_41709032_41709148_41710827
transcript_54734.known	chr8	-	2773	14	FSM	ENSMUSG00000031591.15	ENSMUST00000034000.15	2773	14	0	0	0	0	multi-exon	FALSE	canonical	3	999	junction_6	169.669117600863	869	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAATTTTTTTAAATAACTT	7501	False	NA	NA	False	NA	NA	NA	41827810	41793233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_41794723_41795921_41795979_41796555_41796680_41796766_41796899_41799143_41799226_41799332_41799388_41799967_41800113_41801124_41801171_41802586_41802662_41804930_41805010_41807050_41807138_41807863_41807955_41813289_41813337_41827546
transcript_5474.known	chr10	+	3543	12	FSM	ENSMUSG00000019894.15	ENSMUST00000179636.3	3543	12	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	32.2574867983458	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGAGTTCGTGTCCCTCATT	NA	False	NA	NA	False	AATAAA	-15	NA	103203668	103255236	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_103204015_103224887_103225203_103229251_103229410_103229761_103229889_103230850_103231033_103236042_103236154_103240145_103240388_103240487_103240681_103244063_103244257_103245513_103245674_103252493_103252657_103253883
transcript_54755.known	chr8	-	1039	9	FSM	ENSMUSG00000031590.9	ENSMUST00000033999.8	1039	9	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_1	88.4737778949221	598	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGTTCTCGAGTCCTTT	NA	False	NA	-7	True	AATAAA	-23	NA	41870111	41850495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_41850682_41851992_41852104_41852601_41852694_41853798_41853904_41860681_41860797_41863300_41863359_41864259_41864386_41867839_41867911_41869936
transcript_54768.nnic	chr8	-	1448	6	NNC	ENSMUSG00000031651.6	novel	1850	6	NA	NA	-38828	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_5	84.5113010194495	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTCTGTTTATTGCTTTCTG	NA	False	NA	0	True	TATAAA	-19	NA	43633351	43582843	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_43583726_43589312_43589411_43589573_43589597_43591603_43591835_43593679_43593776_43633233
transcript_54778.known	chr8	+	1519	8	FSM	ENSMUSG00000091490.4	ENSMUST00000209200.2	1519	8	0	0	0	0	multi-exon	FALSE	canonical	3	424	junction_1	49.9477277781891	431	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATAAAGCCATTAGACTTAA	NA	False	NA	4	True	AATATA	-5	NA	43633577	43646901	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
transcript_54779.known	chr8	+	1552	9	FSM	ENSMUSG00000091490.4	ENSMUST00000210136.2	1552	9	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	178.11092049619	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43633577	43646918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_43633650_43635378_43635395_43636158_43636403_43636739_43636836_43638315_43638496_43640607_43640749_43643105_43643129_43643305_43643407_43646239
transcript_54780.known	chr8	+	1395	7	FSM	ENSMUSG00000091490.4	ENSMUST00000209872.2	1395	7	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_4	183.817542386163	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGTGGCTCTCTGCATGT	NA	False	NA	21	True	AATAAA	-12	NA	43633577	43646918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_43633650_43636158_43636403_43636739_43636836_43638315_43638496_43643105_43643129_43643305_43643407_43646239
transcript_54794.known	chr8	-	1837	5	FSM	ENSMUSG00000051176.7	ENSMUST00000211248.2	1837	5	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	1844.21519555067	344	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTTCAATTTCTGGGGAA	NA	False	NA	NA	False	AATAAA	-21	NA	43759973	43748099	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_43749574_43753664_43753743_43755911_43756017_43757512_43757597_43759877
transcript_548.known	chr1	-	2646	4	FSM	ENSMUSG00000079610.10	ENSMUST00000207843.2	2646	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	29.9369708257569	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	7026	False	NA	NA	False	NA	NA	NA	36586300	36576587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_36578616_36580939_36581144_36581842_36581947_36585990
transcript_54807.known	chr8	-	1772	4	FSM	ENSMUSG00000051176.7	ENSMUST00000082120.5	1772	4	0	0	0	0	multi-exon	FALSE	canonical	3	2952	junction_3	637.888356654639	3253	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATGAGTTCAATTTCTGG	NA	False	NA	NA	False	AATAAA	-17	NA	43760017	43748103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_43749574_43753664_43753743_43757512_43757597_43759877
transcript_54810.known	chr8	-	448	1	FSM	ENSMUSG00000110409.2	ENSMUST00000211534.2	448	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACGCTGCTGTGGTCTTTGT	NA	False	NA	NA	False	TTTAAA	-41	NA	45388196	45387748	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_45387700_45388200
transcript_54811.nnic	chr8	-	2042	3	NNC	ENSMUSG00000110231.2	novel	936	3	NA	NA	-48	2218	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	10	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCGGCTCCTTGGTGGTCTTT	NA	False	NA	NA	False	NA	NA	NA	45618304	45611312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_45612932_45614492_45614559_45617947
transcript_54812.known	chr8	-	936	3	FSM	ENSMUSG00000110231.2	ENSMUST00000209210.2	936	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACACAGAACTGACTCTT	NA	False	NA	NA	False	AGTAAA	-17	NA	45618256	45613530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_45614092_45614492_45614559_45617947
transcript_54814.known	chr8	-	1340	8	FSM	ENSMUSG00000071103.11	ENSMUST00000098786.3	1340	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	0.903507902905251	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAATCCGGGGTTGCTGA	1876	False	NA	NA	False	AATAAA	-16	NA	46428289	46406644	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_46406850_46409433_46409604_46415290_46415471_46420892_46420969_46421063_46421202_46423390_46423611_46426540_46426718_46428115
transcript_54817.known	chr8	+	1640	12	FSM	ENSMUSG00000031634.14	ENSMUST00000034051.7	1640	12	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_6	20.6765727613893	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTGTAGTCATGTAAATAC	8860	False	NA	104	True	AGTAAA	-19	NA	46428564	46449995	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_46428626_46432245_46432333_46433351_46433530_46433609_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
transcript_5482.nic	chr10	+	1465	5	ISM	ENSMUSG00000019894.15	ENSMUST00000179636.3	3543	12	-138	24005	-113	-1788	5prime_fragment	FALSE	canonical	3	31	junction_1	35.7596140918774	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTAGTATCATTTATAGT	NA	False	NA	2	True	ATTAAA	-15	NA	103203530	103231231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_103204015_103224887_103225203_103229251_103229410_103229761_103229889_103230850
transcript_54821.known	chr8	+	1613	11	FSM	ENSMUSG00000031634.14	ENSMUST00000130412.8	1613	11	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_5	20.5873747719324	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATCTTAGCTGTGATTTAA	8866	False	NA	3	True	AATAAA	-16	NA	46428570	46449894	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_46428626_46432245_46432333_46433351_46433677_46436559_46436718_46437077_46437271_46438358_46438506_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
transcript_54825.nnic	chr8	+	1076	9	NIC	ENSMUSG00000031634.14	novel	1640	12	NA	NA	-32	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_4	65.648210181238	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTTAGCTGTGATTTAAAAA	8828	False	NA	6	True	AATAAA	-19	NA	46428532	46449897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_46428626_46432245_46432333_46433351_46433530_46433609_46433677_46444784_46444950_46445144_46445270_46447051_46447129_46448574_46448700_46449738
transcript_54828.known	chr8	-	927	5	FSM	ENSMUSG00000050914.17	ENSMUST00000053558.10	927	5	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_4	16.393596310755	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGTGCATTCTTTACTA	NA	False	NA	NA	False	ATTAAA	-22	NA	46452904	46449938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452653
transcript_54829.known	chr8	-	884	5	FSM	ENSMUSG00000050914.17	ENSMUST00000153674.8	884	5	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_4	25.936219847927	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTAAAATTTCTGTGCAT	NA	False	NA	NA	False	ATTAAA	-13	NA	46452904	46449947	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452687
transcript_5483.nic	chr10	+	1563	5	NIC	ENSMUSG00000019894.15	novel	3543	12	NA	NA	-81	-1788	combination_of_known_junctions	FALSE	canonical	3	40	junction_1	32.0341614530488	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTAGTATCATTTATAGT	NA	False	NA	2	True	ATTAAA	-15	NA	103203562	103231231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_103204015_103224757_103225203_103229251_103229410_103229761_103229889_103230850
transcript_54830.nnic	chr8	-	724	5	NNC	ENSMUSG00000050914.17	novel	884	5	NA	NA	-48	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_4	13.6083614002568	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATTAAAATTTCTGTGCAT	NA	False	NA	NA	False	ATTAAA	-13	NA	46452952	46449947	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_46450163_46450650_46450858_46451433_46451526_46452287_46452441_46452895
transcript_54835.nic	chr8	+	4711	5	ISM	ENSMUSG00000031631.16	ENSMUST00000110376.8	2043	6	-64	-2	20	0	intron_retention	FALSE	canonical	2	6	junction_1	21.868927728629	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTTTTGATTCTGTTTTGT	NA	False	NA	16	True	AATAAA	-17	NA	46616707	46648625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_46616901_46622595_46623690_46634754_46635024_46644616_46644768_46645621
transcript_54836.known	chr8	+	1430	3	FSM	ENSMUSG00000031631.16	ENSMUST00000145080.8	1430	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAACACTTGGAGTATCA	NA	False	NA	NA	False	AATATA	-13	NA	46616728	46623832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_46616787_46617798_46617934_46622595
transcript_54838.nic	chr8	+	1129	2	ISM	ENSMUSG00000031631.16	ENSMUST00000034048.13	4619	5	-56	25058	-56	92	5prime_fragment	FALSE	canonical	3	40	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGAAAGAAAAGCATGGACAG	NA	False	NA	NA	False	TTTAAA	-33	NA	46616631	46623569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_46616787_46622595
transcript_5484.nnic	chr10	+	1242	5	NNC	ENSMUSG00000019894.15	novel	2395	3	NA	NA	347	-1788	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	44.144648599802	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATTTAGTATCATTTATAGT	NA	False	NA	2	True	ATTAAA	-15	NA	103204050	103231231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_103204182_103224757_103225203_103229251_103229410_103229761_103229889_103230850
transcript_54843.known	chr8	+	3897	21	FSM	ENSMUSG00000018796.14	ENSMUST00000034046.13	3897	21	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_9	34.1571368823559	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTCTTTCAAGTGCCTT	2206	False	NA	17	True	AATAAA	-26	NA	46924073	46989088	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_46924268_46945836_46946064_46958685_46958804_46961369_46961435_46964396_46964499_46966327_46966428_46966609_46966789_46971304_46971338_46971485_46971538_46971997_46972072_46974304_46974383_46977979_46978115_46979280_46979416_46980226_46980323_46981616_46981690_46983423_46983513_46984006_46984124_46984824_46984969_46986402_46986505_46986601_46986674_46987376
transcript_54848.known	chr8	-	3772	15	FSM	ENSMUSG00000038225.16	ENSMUST00000040468.16	3772	15	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	36.5959739059155	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAATAAAAATATAAAAAAAA	NA	False	NA	-35	True	NA	NA	NA	47070235	47028653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_47029757_47031053_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
transcript_54853.known	chr8	+	3010	14	FSM	ENSMUSG00000031629.15	ENSMUST00000135432.8	3010	14	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	96.1013395100261	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAGATACTATTTTAAAT	NA	False	NA	NA	False	ATTAAA	-15	NA	47005089	47033042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_47005163_47007049_47007099_47008489_47008596_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
transcript_54859.known	chr8	-	1833	14	FSM	ENSMUSG00000038225.16	ENSMUST00000209787.2	1833	14	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_6	19.6766764885012	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTTAAATTAGTGCCGG	NA	False	NA	NA	False	NA	NA	NA	47070243	47031897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_47032202_47034472_47034520_47034602_47034686_47039377_47039487_47039641_47039732_47043249_47043339_47045627_47045791_47046504_47046739_47052753_47052902_47058119_47058250_47060838_47060937_47063474_47063661_47065404_47065482_47070168
transcript_54869.known	chr8	+	2931	13	FSM	ENSMUSG00000031629.15	ENSMUST00000034045.15	2931	13	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_11	27.7942589995368	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCTAGATACTATTTTAAAT	NA	False	NA	NA	False	ATTAAA	-15	NA	47005062	47033042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452_47015681_47021644_47021715_47023005_47023115_47025786_47025866_47026467_47026516_47026883_47026946_47029260_47029418_47031289
transcript_5487.known	chr10	+	1246	2	FSM	ENSMUSG00000097427.6	ENSMUST00000181287.5	1246	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	103987357	103989826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_103987464_103988686
transcript_5488.known	chr10	+	1246	2	FSM	ENSMUSG00000091779.9	ENSMUST00000181634.8	1246	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	103978847	103981317	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_103978954_103980177
transcript_54888.nic	chr8	+	1122	7	ISM	ENSMUSG00000031629.15	ENSMUST00000135432.8	3010	14	-36	17008	-9	0	5prime_fragment	FALSE	canonical	3	36	junction_3	136.084532552381	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCCTTTTATTTTTGAG	NA	False	NA	21	True	NA	NA	NA	47005053	47016034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_47005163_47007049_47007099_47008489_47008596_47009116_47009229_47012903_47013007_47014812_47014874_47015452
transcript_5489.known	chr10	+	1246	2	FSM	ENSMUSG00000097878.6	ENSMUST00000181179.5	1246	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	103995866	103998334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_103995973_103997194
transcript_54892.known	chr8	+	997	6	FSM	ENSMUSG00000031629.15	ENSMUST00000211217.2	997	6	0	0	0	0	multi-exon	FALSE	canonical	3	283	junction_2	30.0865418418269	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTCCTTTTATTTTTGAG	NA	False	NA	21	True	NA	NA	NA	47005072	47016034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_47005163_47007049_47007099_47009116_47009229_47012903_47013007_47014812_47014874_47015452
transcript_54896.known	chr8	-	1748	2	FSM	ENSMUSG00000038225.16	ENSMUST00000132472.3	1748	2	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AAGAAA	-10	NA	47070247	47063812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_47065482_47070168
transcript_549.known	chr1	-	2109	4	FSM	ENSMUSG00000079610.10	ENSMUST00000001172.12	2109	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	11.5566238822398	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAAATGTGTGGCGCTAAT	6800	False	NA	77	True	NA	NA	NA	36586526	36577174	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_36578616_36580939_36581144_36581842_36581947_36586166
transcript_5490.known	chr10	+	1246	2	FSM	ENSMUSG00000097550.8	ENSMUST00000181059.8	1246	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104004375	104006844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_104004482_104005704
transcript_54900.nnic	chr8	+	1530	8	NNC	ENSMUSG00000031628.10	novel	2601	7	NA	NA	-18	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	90.2784807228869	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTATTTGAGGGTTTG	NA	False	NA	21	True	CATAAA	-17	NA	47070411	47092724	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953_47091181_47092165
transcript_54902.known	chr8	+	1520	7	FSM	ENSMUSG00000031628.10	ENSMUST00000093517.7	1520	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	80.3189821205977	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATGTTTTATTACTGGAAC	NA	False	NA	NA	False	TTTAAA	-9	NA	47070429	47091752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_47070532_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47089236_47089358_47090953
transcript_54905.nnic	chr8	+	2364	6	NIC	ENSMUSG00000031628.10	novel	2601	7	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	1	7	junction_5	100.096753194097	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGTGTATTTGAGGGTTTG	NA	False	NA	21	True	CATAAA	-17	NA	47070441	47092724	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_47070537_47082768_47082837_47085351_47085477_47087232_47087362_47088411_47088588_47090953
transcript_54906.known	chr8	-	10467	4	FSM	ENSMUSG00000038143.17	ENSMUST00000079195.6	10467	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGATTTTTTTTCTTTTTT	7739	False	NA	0	True	ATTAAA	-23	NA	47742437	47633082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_47639608_47644873_47647140_47656155_47656309_47740914
transcript_54907.known	chr8	-	4332	30	FSM	ENSMUSG00000038102.16	ENSMUST00000039061.15	4332	30	0	0	0	0	multi-exon	TRUE	canonical	3	87	junction_18	20.4181612288351	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTTTGGTTTTCTTTTAT	4054	False	NA	3	True	AATAAA	-29	NA	47986502	47943149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_47943954_47946273_47946442_47948037_47948172_47949953_47950046_47951688_47951801_47954587_47954745_47954842_47954909_47956346_47956467_47956916_47957039_47958368_47958518_47958620_47958809_47960615_47960772_47963905_47964037_47965370_47965504_47965595_47965658_47966317_47966464_47966788_47966844_47966915_47966995_47967085_47967166_47967818_47967913_47969493_47969642_47972606_47972741_47975385_47975483_47977559_47977634_47978005_47978106_47979974_47980090_47980994_47981066_47982363_47982534_47983686_47983913_47986353
transcript_54909.nic	chr8	-	1168	6	ISM	ENSMUSG00000038102.16	ENSMUST00000125065.8	4646	29	-20	34528	-20	0	5prime_fragment	FALSE	canonical	3	108	junction_5	19.61224107541	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAATATCATTTTACCTTTA	4031	False	NA	NA	False	AATAAA	-23	NA	47986525	47977691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_47978106_47979974_47980090_47980994_47981066_47982363_47982534_47983686_47983913_47986353
transcript_5491.known	chr10	+	1246	2	FSM	ENSMUSG00000094144.9	ENSMUST00000180889.8	1246	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104012884	104015352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_104012991_104014212
transcript_54911.known	chr8	+	1371	8	FSM	ENSMUSG00000031568.17	ENSMUST00000175692.8	1371	8	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_2	58.3067189043231	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTTTTCTCTCGGACTG	NA	False	NA	5	True	AATAAA	-13	NA	47986698	48004314	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_47986979_47990313_47990395_47995730_47995837_47995916_47996065_47997145_47997264_48000823_48000874_48001006_48001010_48003729
transcript_54919.known	chr8	-	2812	2	FSM	ENSMUSG00000063049.5	ENSMUST00000080353.3	2812	2	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAATGTCCTCCATCCTGA	NA	False	NA	NA	False	AATGAA	-21	NA	48128193	48120212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_48122372_48127540
transcript_5492.known	chr10	+	1185	2	FSM	ENSMUSG00000094144.9	ENSMUST00000181239.2	1185	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104013299	104015352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_104013345_104014212
transcript_54921.known	chr8	-	3393	3	FSM	ENSMUSG00000038069.7	ENSMUST00000212175.2	3393	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	31	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTATTAGATGATTGGGTA	NA	False	NA	NA	False	AATAAA	-18	NA	48166966	48162479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_48165330_48165922_48166054_48166554
transcript_54922.known	chr8	-	3464	3	FSM	ENSMUSG00000038069.7	ENSMUST00000038738.7	3464	3	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	33.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAGAATGTGTGCTCTCAT	NA	False	NA	NA	False	TATAAA	-45	NA	48166967	48162378	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_48165330_48165953_48166054_48166554
transcript_54927.known	chr8	+	2493	6	FSM	ENSMUSG00000031562.17	ENSMUST00000174818.9	2493	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	146.129531580718	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTGTTTGCTTTTATA	NA	False	NA	8	True	ATTAAA	-14	NA	48563196	48594698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591213_48591914_48593377
transcript_54928.known	chr8	+	2096	6	FSM	ENSMUSG00000031562.17	ENSMUST00000170263.10	2096	6	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	42.4480859403578	323	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	10	True	ATTAAA	-16	NA	48562992	48594700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
transcript_54929.known	chr8	+	2072	6	FSM	ENSMUSG00000031562.17	ENSMUST00000033966.14	2072	6	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	152.941034389074	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACGTGTTTGCTTTTATA	NA	False	NA	8	True	ATTAAA	-14	NA	48563047	48594698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_48563317_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
transcript_5493.known	chr10	+	1246	2	FSM	ENSMUSG00000095022.9	ENSMUST00000181703.8	1246	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104021393	104023861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_104021500_104022721
transcript_54930.nic	chr8	+	2149	6	NIC	ENSMUSG00000031562.17	novel	2096	6	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	56	junction_1	132.43775896624	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	10	True	ATTAAA	-16	NA	48563207	48594700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_48563552_48564693_48564826_48565002_48565139_48590292_48590410_48591816_48591914_48593377
transcript_54932.nic	chr8	+	1089	5	ISM	ENSMUSG00000031562.17	ENSMUST00000174818.9	2493	6	-204	3072	0	0	5prime_fragment	TRUE	canonical	3	18	junction_4	162.647625251646	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGACTGGAAGGTGGCT	NA	False	NA	NA	False	AATAAA	-20	NA	48562992	48591626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48591213
transcript_54933.nnic	chr8	+	1999	5	NIC	ENSMUSG00000031562.17	novel	2096	6	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_4	165.171123384204	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTGTTTGCTTTTATATT	NA	False	NA	10	True	ATTAAA	-16	NA	48562992	48594700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292_48590410_48593377
transcript_54934.known	chr8	+	1126	5	FSM	ENSMUSG00000031562.17	ENSMUST00000098773.6	1126	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	189.227871889952	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGACTGGAAGGTGGCT	NA	False	NA	NA	False	AATAAA	-20	NA	48563223	48591626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_48563552_48564693_48564826_48565002_48565139_48590292_48590410_48591213
transcript_54936.known	chr8	+	786	4	FSM	ENSMUSG00000031562.17	ENSMUST00000173991.8	786	4	0	0	0	0	multi-exon	FALSE	canonical	3	319	junction_1	45.0209827623619	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTCTGACATATTGTGCAT	NA	False	NA	NA	False	AATATA	-19	NA	48563199	48590726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_48563284_48564693_48564826_48565002_48565139_48590292
transcript_5494.known	chr10	+	1185	2	FSM	ENSMUSG00000095022.9	ENSMUST00000181707.2	1185	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104021808	104023861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_104021854_104022721
transcript_54946.known	chr8	-	2526	9	FSM	ENSMUSG00000031561.17	ENSMUST00000145344.2	2526	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	26.5774222790699	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAAAAAAAAGCCAAAATT	NA	False	NA	NA	False	NA	NA	NA	48753134	48728949	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_48729940_48730701_48730857_48731992_48732226_48740825_48741076_48745153_48745298_48746541_48746810_48751820_48752083_48752628_48752749_48753030
transcript_54949.known	chr8	+	1147	9	FSM	ENSMUSG00000031521.6	ENSMUST00000211424.2	1147	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_6	118.936892405174	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCTTACTGACATTATGGA	NA	False	NA	-65	True	NA	NA	NA	53964761	53976369	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950_53972005_53973279_53973380_53974084_53974219_53976210
transcript_5495.known	chr10	+	1258	2	FSM	ENSMUSG00000090854.10	ENSMUST00000181615.8	1258	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104029902	104032383	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_104030009_104031231
transcript_54950.known	chr8	+	1181	9	FSM	ENSMUSG00000031521.6	ENSMUST00000033920.6	1181	9	0	0	0	0	multi-exon	FALSE	canonical	3	314	junction_3	34.8440723079264	235	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTGACATTATGGAATGT	NA	False	NA	-61	True	NA	NA	NA	53964761	53976373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_53964967_53966576_53966731_53967271_53967385_53968978_53969092_53970788_53970904_53971950_53972027_53973271_53973380_53974084_53974219_53976210
transcript_54954.known	chr8	-	2253	10	FSM	ENSMUSG00000039396.12	ENSMUST00000047768.11	2253	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	6.19039478985961	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGTCTTTTGTAAGTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	54092100	54039901	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_54040363_54041959_54042135_54052133_54052555_54053985_54054156_54058667_54058835_54060362_54060438_54061749_54061964_54062438_54062574_54076652_54076778_54091790
transcript_54955.nic	chr8	-	1847	5	ISM	ENSMUSG00000039396.12	ENSMUST00000047768.11	2253	10	46	19427	46	21	5prime_fragment	FALSE	canonical	3	34	junction_3	2.95803989154981	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCCCTTTATCAGGCCAAC	NA	False	NA	NA	False	NA	NA	NA	54092054	54059328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_54060438_54061749_54061964_54062438_54062574_54076652_54076778_54091790
transcript_54957.known	chr8	+	2449	7	FSM	ENSMUSG00000031520.7	ENSMUST00000033919.6	2449	7	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_4	8.69386757049665	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATTAAAAAAAGAAATCACTA	1021	False	NA	NA	False	NA	NA	NA	54530640	54640131	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_54530961_54609992_54610195_54612327_54612519_54622059_54622212_54633736_54633844_54634121_54634456_54638988
transcript_5496.known	chr10	+	1197	2	FSM	ENSMUSG00000090854.10	ENSMUST00000181036.2	1197	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGACGCCGCTGATGACTGA	NA	False	NA	NA	False	AATAAA	-45	NA	104030317	104032383	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_104030363_104031231
transcript_54961.known	chr8	-	3466	5	FSM	ENSMUSG00000054408.10	ENSMUST00000067476.9	3466	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	423.496753234308	118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGGTTTATGTGTTTTT	NA	False	NA	-4	True	AATAAA	-38	NA	54983033	54973467	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_54976431_54977975_54978092_54979485_54979563_54981376_54981451_54982797
transcript_54964.known	chr8	+	1683	7	FSM	ENSMUSG00000031613.10	ENSMUST00000034026.10	1683	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	3.18416219575713	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATAAATTGCCTATTCCTT	NA	False	NA	NA	False	AATAAA	-18	NA	56747619	56774078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_56747748_56747973_56748098_56751390_56751498_56760628_56760726_56770784_56770862_56772027_56772192_56773092
transcript_54968.nic	chr8	-	1768	12	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_11	55.4532041566551	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003911	56984556	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097_57003157_57003579
transcript_54969.nic	chr8	-	1610	12	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_11	54.5031654247927	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003896	56984556	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097_57003157_57003722
transcript_54970.nic	chr8	-	2191	11	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	-4	0	intron_retention	FALSE	canonical	3	38	junction_10	43.2676553559353	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003911	56984556	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003097
transcript_54971.known	chr8	-	1690	11	FSM	ENSMUSG00000038215.16	ENSMUST00000040330.15	1690	11	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_10	43.9777216326631	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003892	56984556	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003579
transcript_54972.nic	chr8	-	1566	11	NIC	ENSMUSG00000038215.16	novel	1690	11	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	61	junction_10	38.0914688611505	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTATATGTGCCGATTTT	NA	False	NA	-5	True	AATAAA	-18	NA	57003911	56984556	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_56984768_56985511_56985550_56985810_56985936_56991645_56991719_56992730_56992938_56993900_56994069_56995940_56996064_56997152_56997300_56998439_56998588_57000422_57000560_57003722
transcript_54976.known	chr8	+	3571	6	FSM	ENSMUSG00000038206.14	ENSMUST00000040218.13	3571	6	0	0	0	0	multi-exon	TRUE	canonical	3	53	junction_4	8.56504524214554	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTCTTGCTGAATATGCA	NA	False	NA	NA	False	NA	NA	NA	57004124	57046974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_57004412_57017592_57017930_57022318_57022446_57041041_57041161_57043092_57043290_57044470
transcript_54980.known	chr8	-	1178	4	FSM	ENSMUSG00000031609.4	ENSMUST00000034022.4	1178	4	0	0	0	0	multi-exon	FALSE	canonical	3	1617	junction_3	52.2961651451508	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCTGCTTCAGCCTGTTT	NA	False	NA	97	True	AATAAA	-14	NA	57940894	57935740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_57936085_57938075_57938175_57938543_57938670_57940285
transcript_54981.known	chr8	+	298	2	FSM	ENSMUSG00000096917.3	ENSMUST00000210752.2	298	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACACTCCTGCTTCTTTCAA	NA	False	NA	9	True	NA	NA	NA	57958848	57959765	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_57958943_57959561
transcript_54991.known	chr8	+	2628	5	FSM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	0	0	0	0	multi-exon	FALSE	canonical	3	4513	junction_1	1044.37167114969	2612	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGGATGTTCTGTTTTGCTT	NA	False	NA	5	True	AAAACA	-17	NA	57964940	57969033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_57965040_57965608_57965783_57966095_57966242_57966323_57966499_57966999
transcript_55.known	ERCC-00162	+	507	1	FSM	ERCC-00162A	DQ516750	507	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00162_+_0_500
transcript_5500.known	chr10	-	2033	12	FSM	ENSMUSG00000036009.17	ENSMUST00000046638.10	2033	12	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_11	25.2121576340063	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATCAATGTTCTTGAGTG	NA	False	NA	NA	False	AATAAA	-22	NA	105677239	105599049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661858_105662453_105665708_105665816_105668711_105668877_105676936
transcript_55001.nic	chr8	+	475	3	ISM	ENSMUSG00000054717.8	ENSMUST00000067925.8	2628	5	-54	2790	-54	0	5prime_fragment	FALSE	canonical	3	4513	junction_1	1364.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTTGATCTGAGAACTAAC	NA	False	NA	NA	False	AAAAAG	-28	NA	57964886	57966243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_57965040_57965608_57965783_57966095
transcript_55003.known	chr8	-	4313	12	FSM	ENSMUSG00000031608.14	ENSMUST00000034021.12	4313	12	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_6	43.6895509190027	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGCTTTTCAGTGCTTGTA	NA	False	NA	-3	True	AATAAA	-18	NA	58106065	57976861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_57979286_57984635_57984765_57985661_57985761_57989616_57989836_57991119_57991243_57993053_57993172_57995545_57995729_57998362_57998443_57998702_57998834_58005477_58005645_58036800_58037262_58105886
transcript_55004.known	chr8	-	3413	12	FSM	ENSMUSG00000031608.14	ENSMUST00000110316.3	3413	12	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_6	28.2342620537355	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAAGAAAAGC	NA	False	NA	NA	False	GATAAA	-19	NA	58106037	57977733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_57979286_57984635_57984765_57985661_57985761_57989616_57989836_57991119_57991243_57993053_57993172_57995868_57996052_57998362_57998443_57998702_57998834_58005477_58005645_58036800_58037262_58105886
transcript_55016.nnic	chr8	+	642	4	NIC	ENSMUSG00000038005.16	novel	1000	7	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	3	57	junction_1	388.477655585091	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACGGCTCTTCTAGTGTT	NA	False	NA	15	True	AATAAA	-28	NA	61343426	61360607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_61343571_61357033_61357122_61358581_61358755_61360370
transcript_55017.known	chr8	+	531	3	FSM	ENSMUSG00000038005.16	ENSMUST00000146863.2	531	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	396.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGGCTCTTCTAGTGTTTC	NA	False	NA	17	True	AATAAA	-30	NA	61343451	61360609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_61343571_61358581_61358755_61360370
transcript_55018.known	chr8	+	1191	8	FSM	ENSMUSG00000038005.16	ENSMUST00000037190.15	1191	8	0	0	0	0	multi-exon	FALSE	canonical	3	724	junction_4	79.3373062516324	1072	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCTTCTAGTGTTTCTTTCA	NA	False	NA	22	True	AATAAA	-35	NA	61343484	61360614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_61343571_61346734_61346895_61348494_61348685_61349771_61349871_61353117_61353269_61357033_61357122_61358581_61358755_61360370
transcript_55019.known	chr8	+	1000	7	FSM	ENSMUSG00000038005.16	ENSMUST00000149267.8	1000	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	318.3514829032	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATACGGCTCTTCTAGTGTT	NA	False	NA	15	True	AATAAA	-28	NA	61343478	61360607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_61343571_61346734_61346895_61349771_61349871_61353117_61353269_61357033_61357122_61358581_61358755_61360370
transcript_55020.known	chr8	-	4099	13	FSM	ENSMUSG00000004319.16	ENSMUST00000110301.2	4099	13	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_11	50.7408995672021	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATCAGTTAATATTGCACA	NA	False	NA	NA	False	ATTAAA	-14	NA	61436273	61364956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_61366210_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61428765_61428942_61435809
transcript_55023.known	chr8	-	5518	12	FSM	ENSMUSG00000004319.16	ENSMUST00000093490.9	5518	12	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_11	42.8184713366008	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTGGCTTTTAATTGCA	NA	False	NA	-1	True	ATTAAA	-18	NA	61436334	61363422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_61366210_61372373_61372591_61375823_61376223_61380265_61380453_61382104_61382651_61383714_61383796_61386114_61386322_61387518_61387642_61390333_61390522_61391581_61391682_61394290_61394449_61435809
transcript_55026.known	chr8	+	2472	1	FSM	ENSMUSG00000045746.4	ENSMUST00000052189.4	2472	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	GAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	61436470	61438942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_61436500_61438900
transcript_5503.nnic	chr10	-	1892	12	NNC	ENSMUSG00000036009.17	novel	2145	13	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_8	39.2127066604228	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAAAATCATAGTGTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	105677248	105599115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661942_105662453_105665708_105665816_105668711_105668877_105676936
transcript_55030.known	chr8	+	4309	5	FSM	ENSMUSG00000031641.15	ENSMUST00000034058.14	4309	5	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	10.8483869768736	127	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTCTGGCCTCCTCCTCTCT	2566	False	NA	NA	False	ATTAAA	-29	NA	61940767	61959728	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_61941025_61942973_61943095_61944578_61944713_61948101_61948237_61956066
transcript_55034.nic	chr8	-	3279	8	ISM	ENSMUSG00000058056.17	ENSMUST00000121200.9	4193	12	57488	0	187	0	3prime_fragment	FALSE	canonical	3	101	junction_4	7.79848232226067	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTTGGCCCTCTGTGAT	NA	False	NA	-8	True	AATAAA	-17	NA	61986688	61964466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_61966559_61968236_61968371_61968902_61969069_61969568_61969777_61975917_61976051_61978101_61978197_61984945_61985096_61986387
transcript_55035.nic	chr8	-	1985	8	ISM	ENSMUSG00000058056.17	ENSMUST00000121200.9	4193	12	57488	1294	187	-1294	3prime_fragment	FALSE	canonical	3	101	junction_4	7.79848232226067	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGGGTTCTGGAGAAAGC	NA	False	NA	NA	False	AATAAA	-19	NA	61986688	61965760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_61966559_61968236_61968371_61968902_61969069_61969568_61969777_61975917_61976051_61978101_61978197_61984945_61985096_61986387
transcript_55036.nic	chr8	-	1480	8	ISM	ENSMUSG00000058056.17	ENSMUST00000121200.9	4193	12	57488	1799	187	1693	3prime_fragment	FALSE	canonical	3	101	junction_4	7.79848232226067	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAAAACACCAAAATCATATT	NA	False	NA	NA	False	NA	NA	NA	61986688	61966265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_61966559_61968236_61968371_61968902_61969069_61969568_61969777_61975917_61976051_61978101_61978197_61984945_61985096_61986387
transcript_55040.known	chr8	-	2117	9	FSM	ENSMUSG00000037852.9	ENSMUST00000048967.9	2117	9	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	3.34477204006491	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCCATGGTGTGCATTTCTC	NA	False	NA	NA	False	AATAAA	-20	NA	65146088	65045575	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_65046256_65047930_65048050_65050493_65050594_65059636_65059777_65062081_65062265_65064407_65064526_65070571_65070740_65072384_65072582_65145676
transcript_55049.known	chr8	-	2044	6	FSM	ENSMUSG00000031604.11	ENSMUST00000034015.11	2044	6	0	0	0	0	multi-exon	TRUE	canonical	3	690	junction_2	21.3822356174466	611	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGAATGGTTCTGTTTTTTCC	NA	False	NA	-17	True	AATAAA	-1	NA	65186826	65171172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_65172216_65173375_65173531_65175497_65175625_65176621_65176771_65180657_65180943_65186541
transcript_55062.known	chr8	-	2766	5	FSM	ENSMUSG00000031604.11	ENSMUST00000132013.2	2766	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	314.597361718117	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCTTCTGGTTTTCATGAA	NA	False	NA	-41	True	AATAAA	-16	NA	65186612	65171260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_65172216_65173375_65173558_65175497_65176771_65180657_65180943_65186541
transcript_55067.known	chr8	+	1122	6	FSM	ENSMUSG00000025521.16	ENSMUST00000026595.13	1122	6	0	0	0	0	multi-exon	FALSE	canonical	3	529	junction_4	36.201657420621	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTTTTGTATGTTGTGA	NA	False	NA	25	True	TATAAA	-17	NA	65399836	65421685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_65399986_65409037_65409185_65411996_65412262_65416849_65416985_65418190_65418294_65421362
transcript_55069.known	chr8	+	916	5	FSM	ENSMUSG00000025521.16	ENSMUST00000079896.9	916	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	253.637536654179	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGAATGTTTTGTATGTTGT	NA	False	NA	23	True	TATAAA	-15	NA	65399905	65421683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_65399986_65409037_65409185_65411996_65412262_65418190_65418294_65421362
transcript_55070.known	chr8	-	945	3	FSM	ENSMUSG00000079042.11	ENSMUST00000124790.8	945	3	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_2	5	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTATGAGTTTATTGTG	NA	False	NA	-24	True	ATTAAA	-18	NA	65489824	65481071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_65481644_65488316_65488407_65489541
transcript_55071.known	chr8	-	975	4	FSM	ENSMUSG00000079042.11	ENSMUST00000142822.4	975	4	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_3	201.802433638007	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATGAGTTTATTGTGTGT	NA	False	NA	-21	True	ATTAAA	-21	NA	65489988	65481068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_65481644_65488316_65488407_65489541_65489796_65489932
transcript_55077.known	chr8	-	4328	7	FSM	ENSMUSG00000025591.7	ENSMUST00000026681.7	4328	7	0	0	0	0	multi-exon	FALSE	canonical	3	650	junction_5	98.3165239870129	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCTGAGTCTGATAACAAA	NA	False	NA	0	True	AATAAA	-17	NA	66939171	66925769	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935196_66936709_66936823_66939063
transcript_55078.known	chr8	-	3150	7	FSM	ENSMUSG00000025591.7	ENSMUST00000143972.2	3150	7	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_5	270.629153804406	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAAAAAAAGATAATTAT	NA	False	NA	NA	False	NA	NA	NA	66939149	66926981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_66929562_66930666_66930710_66932991_66933141_66934114_66934200_66935157_66935252_66936709_66936823_66939063
transcript_55086.known	chr8	-	1895	2	FSM	ENSMUSG00000025591.7	ENSMUST00000145787.2	1895	2	0	0	0	0	multi-exon	FALSE	canonical	3	974	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGGA	NA	False	NA	NA	False	NA	NA	NA	66939182	66935046	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_66936823_66939063
transcript_55087.known	chr8	+	1396	2	FSM	ENSMUSG00000051147.11	ENSMUST00000093470.7	1396	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTCAAAGTGGTATATTGA	NA	False	NA	NA	False	AATAAA	-25	NA	67947509	67955236	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_67947555_67953885
transcript_55090.known	chr8	+	2718	9	FSM	ENSMUSG00000053886.5	ENSMUST00000066594.4	2718	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	6.37867541108654	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAAGAGTTGCCTTGGTCA	NA	False	NA	17	True	NA	NA	NA	68729218	68800346	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_68729525_68734684_68735064_68746954_68747112_68749305_68749478_68781903_68782013_68783686_68783889_68787716_68787848_68798604_68798826_68799305
transcript_55094.known	chr8	+	4250	18	FSM	ENSMUSG00000031864.17	ENSMUST00000110242.8	4250	18	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_16	214.082317705889	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGGCCTAATGCCAT	NA	False	NA	NA	False	AATAAA	-24	NA	69246607	69282060	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69276841_69276920_69279928
transcript_55095.known	chr8	+	4192	18	FSM	ENSMUSG00000031864.17	ENSMUST00000070713.8	4192	18	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_17	216.037065895717	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTCAGGCCTAATGCCAT	NA	False	NA	NA	False	AATAAA	-24	NA	69246665	69282060	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69277703_69277782_69279928
transcript_55096.nnic	chr8	+	3166	18	NNC	ENSMUSG00000031864.17	novel	4250	18	NA	NA	-10	-814	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_17	169.630210471184	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGAGTGTTATTGTCCATA	NA	False	NA	NA	False	AATAAA	-13	NA	69246597	69281246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928_69280809_69281010
transcript_55098.known	chr8	+	4201	17	FSM	ENSMUSG00000031864.17	ENSMUST00000034328.13	4201	17	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_4	79.6960779696843	146	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAGGCCTAATGCCATGT	NA	False	NA	NA	False	AATAAA	-26	NA	69246580	69282062	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027_69261162_69263230_69263385_69264562_69264646_69266217_69266371_69266908_69267018_69271939_69272020_69273306_69273470_69274808_69274903_69279928
transcript_55099.nic	chr8	+	1322	9	ISM	ENSMUSG00000031864.17	ENSMUST00000110241.8	2322	16	11	13894	-10	-5995	5prime_fragment	FALSE	canonical	3	438	junction_4	90.4087074069749	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTAGAATTAAGTGTAAGTTA	NA	False	NA	NA	False	ATTAAA	-6	NA	69246597	69261269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410_69250551_69254967_69255050_69255534_69255676_69257465_69257638_69260113_69260284_69261027
transcript_55100.known	chr8	+	1408	4	FSM	ENSMUSG00000031864.17	ENSMUST00000146322.8	1408	4	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_3	36.0030862874591	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAGCTTCAG	NA	False	NA	NA	False	NA	NA	NA	69246607	69251453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_69246801_69247262_69247331_69249368_69249473_69250410
transcript_55102.known	chr8	+	4115	10	FSM	ENSMUSG00000015568.17	ENSMUST00000015712.15	4115	10	0	0	0	0	multi-exon	TRUE	canonical	3	87	junction_5	14.4871164560059	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAAGTCATCATTTTGTATC	NA	False	NA	13	True	AATAAA	-24	NA	69333142	69359586	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_69333493_69340094_69340256_69345246_69345427_69347278_69347391_69348313_69348548_69349250_69349494_69352068_69352190_69353799_69353983_69354935_69355038_69357157
transcript_55107.known	chr8	+	2825	14	FSM	ENSMUSG00000006273.15	ENSMUST00000006435.8	2825	14	0	0	0	0	multi-exon	TRUE	canonical	3	1214	junction_12	88.1479391228044	536	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGAAATGACTCTGTGTTT	NA	False	NA	18	True	AATAAA	-22	NA	69541297	69566363	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_69541581_69548871_69548928_69554016_69554116_69554587_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460_69558612_69560233_69560317_69560934_69561040_69562531_69562662_69565081
transcript_55114.known	chr8	+	507	2	FSM	ENSMUSG00000006273.15	ENSMUST00000125211.2	507	2	0	0	0	0	multi-exon	FALSE	canonical	3	1413	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAAGTAATGTTCTTC	NA	False	NA	NA	False	NA	NA	NA	69541440	69549238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_69541581_69548871
transcript_55115.known	chr8	+	2507	10	FSM	ENSMUSG00000006273.15	ENSMUST00000153079.8	2507	10	0	0	0	0	multi-exon	FALSE	canonical	3	1265	junction_7	83.2199228283442	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	69541419	69560015	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_69541581_69548871_69548928_69554016_69554116_69554587_69554682_69554815_69554894_69555102_69555243_69555413_69555516_69556031_69556130_69556296_69556421_69558460
transcript_55116.known	chr8	+	3001	4	FSM	ENSMUSG00000059897.6	ENSMUST00000212681.2	3001	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	2.49443825784929	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATGACCCTTGTCCTGTA	7200	False	NA	27	True	AATAAA	-18	NA	69661689	69683188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_69661812_69678994_69679122_69679323_69679382_69680494
transcript_55117.known	chr8	-	928	1	FSM	ENSMUSG00000110444.3	ENSMUST00000211874.2	928	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	69848191	69847263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_69847300_69848200
transcript_55121.known	chr8	-	2259	5	FSM	ENSMUSG00000060427.16	ENSMUST00000121886.8	2259	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_4	33.7083075813663	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTTATTACTTAGTACTC	NA	False	NA	-6	True	AATAAA	-23	NA	70078199	70063507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70065107_70066044_70066106_70066398_70066526_70071964_70072323_70078085
transcript_55122.known	chr8	-	914	2	FSM	ENSMUSG00000060427.16	ENSMUST00000140522.2	914	2	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAGAAAAACAC	NA	False	NA	NA	False	NA	NA	NA	70078196	70071519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70072323_70078085
transcript_55123.known	chr8	-	3180	5	FSM	ENSMUSG00000054648.9	ENSMUST00000238418.2	3180	5	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_4	9.33742469849155	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCTTTGTCAATGTATTTT	NA	False	NA	0	True	NA	NA	NA	70169552	70157786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70160345_70160760_70160822_70160988_70161116_70163335_70163635_70169417
transcript_55126.known	chr8	-	2291	4	FSM	ENSMUSG00000092260.8	ENSMUST00000130458.8	2291	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	1.24721912892465	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAATTTGGAAAAGGTATCA	9672	False	NA	NA	False	AATAAA	-16	NA	70202612	70194288	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70196261_70196841_70196903_70197110_70197238_70202481
transcript_55127.known	chr8	+	5837	3	FSM	ENSMUSG00000031861.17	ENSMUST00000034325.6	5837	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGTGAAGTTGTTTCTT	334	False	NA	NA	False	NA	NA	NA	70275078	70283752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70275362_70276203_70276946_70278940
transcript_55128.known	chr8	+	1560	8	FSM	ENSMUSG00000031860.18	ENSMUST00000081503.13	1560	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	14.9543523116591	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2073	False	NA	5	True	ATTAAA	-18	NA	70285140	70324942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70285502_70311729_70311804_70316961_70317201_70317473_70317665_70319117_70319254_70322678_70322833_70323227_70323335_70324644
transcript_55130.known	chr8	+	1101	7	FSM	ENSMUSG00000031860.18	ENSMUST00000156319.8	1101	7	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_2	13.7446959466795	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2219	False	NA	5	True	ATTAAA	-18	NA	70285286	70324942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70285502_70311729_70311804_70317547_70317665_70319117_70319254_70322678_70322833_70323227_70323335_70324644
transcript_55131.known	chr8	+	931	6	FSM	ENSMUSG00000031860.18	ENSMUST00000134777.10	931	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_2	11.2178429299041	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCCAGTGTTTTCAATACAG	2272	False	NA	5	True	ATTAAA	-18	NA	70285339	70324942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70285502_70311729_70311804_70319117_70319254_70322678_70322833_70323227_70323335_70324644
transcript_55135.known	chr8	+	547	2	FSM	ENSMUSG00000031860.18	ENSMUST00000151975.2	547	2	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCCATCCCTAGGACCCACAT	2206	False	NA	NA	False	NA	NA	NA	70285273	70312048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70285502_70311729
transcript_55141.nnic	chr8	+	2183	15	NNC	ENSMUSG00000011306.8	novel	2681	14	NA	NA	-37	-392	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	133.476685268267	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCAGCATTCCAGTTCCT	2120	False	NA	11	True	ATTAAA	-16	NA	70495425	70524605	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_70495528_70495670_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
transcript_55144.known	chr8	+	2681	14	FSM	ENSMUSG00000011306.8	ENSMUST00000011450.8	2681	14	0	0	0	0	multi-exon	FALSE	canonical	3	384	junction_4	56.2515483021626	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCTTGCTCCTCTGGTCTTC	2157	False	NA	NA	False	GATAAA	-14	NA	70495462	70524997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70495731_70501158_70501331_70505240_70505342_70509035_70509255_70511931_70512056_70512402_70512504_70513185_70513310_70517486_70517849_70522101_70522209_70522645_70522824_70522980_70523088_70523763_70523910_70524171_70524302_70524455
transcript_55145.known	chr8	+	1446	10	FSM	ENSMUSG00000036151.16	ENSMUST00000110160.9	1446	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.28620410031003	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGTGTTTCGGGGAGCTGG	NA	False	NA	NA	False	AATAAA	-29	NA	70525573	70532716	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70525740_70526927_70527032_70527981_70528080_70528149_70528254_70528650_70528734_70530039_70530165_70530530_70530633_70530959_70531053_70531454_70531575_70532265
transcript_55146.known	chr8	+	3648	5	FSM	ENSMUSG00000007594.11	ENSMUST00000007738.11	3648	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1.08972473588517	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTGGCCAATTTTTATT	1089	False	NA	3	True	NA	NA	NA	70536106	70543512	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70536214_70537069_70537191_70537431_70537795_70539457_70539782_70540779
transcript_55148.known	chr8	-	1121	9	FSM	ENSMUSG00000036120.11	ENSMUST00000212320.2	1121	9	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_5	20.7590341779188	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTTCAGGGTGCCTCCCA	9603	False	NA	2	True	AATAAA	-18	NA	70591746	70585915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70586114_70586875_70586957_70587261_70587329_70587688_70587815_70587940_70588042_70588185_70588282_70588859_70588941_70590678_70590874_70591570
transcript_55149.known	chr8	-	3609	9	FSM	ENSMUSG00000036120.11	ENSMUST00000075724.9	3609	9	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_5	11.7626261948597	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTTTAATGTGTAATGAGTG	9545	False	NA	-12	True	ATTAAA	-22	NA	70591804	70583455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70586114_70586875_70586957_70587261_70587329_70587688_70587815_70587940_70588042_70588215_70588282_70588859_70588941_70590678_70590874_70591570
transcript_55151.known	chr8	+	1161	5	FSM	ENSMUSG00000071078.7	ENSMUST00000095273.7	1161	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	248.840310239318	780	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAACCAAACACCCCA	461	False	NA	9	True	NA	NA	NA	70583996	70586389	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70584250_70584567_70584659_70585061_70585168_70585236_70585305_70585746
transcript_55154.nic	chr8	+	1306	4	NIC	ENSMUSG00000071078.7	novel	1161	5	NA	NA	-53	0	intron_retention	FALSE	canonical	0	0	junction_3	279.964680312039	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACACCCCATTTGTGGTA	394	False	NA	18	True	NA	NA	NA	70583929	70586398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_70584250_70584567_70584659_70585061_70585305_70585746
transcript_55155.known	chr8	+	1078	4	FSM	ENSMUSG00000071078.7	ENSMUST00000211898.2	1078	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	271.261661295674	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAACACCCCATTTGTGGTA	447	False	NA	18	True	NA	NA	NA	70583982	70586398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70584250_70584567_70584659_70585236_70585305_70585746
transcript_55162.known	chr8	+	1312	9	FSM	ENSMUSG00000079033.11	ENSMUST00000110143.8	1312	9	0	0	0	0	multi-exon	TRUE	canonical	3	113	junction_6	45.467021015237	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	8589	False	NA	5	True	NA	NA	NA	70605427	70620138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619047_70619263_70619349_70619468_70619557_70619715
transcript_55163.known	chr8	+	1342	9	FSM	ENSMUSG00000079033.11	ENSMUST00000110146.9	1342	9	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_6	49.3303595669036	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	8589	False	NA	5	True	NA	NA	NA	70605427	70620138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70605495_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619077_70619263_70619349_70619468_70619557_70619715
transcript_55164.nnic	chr8	+	1630	9	NNC	ENSMUSG00000079033.11	novel	1337	9	NA	NA	5759	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_1	79.2668554630496	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCAATCTCCTCAAAGATCT	481	False	NA	5	True	NA	NA	NA	70611189	70620138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_70611545_70616878_70616955_70617697_70617902_70618179_70618315_70618695_70618826_70618942_70619077_70619263_70619349_70619468_70619557_70619715
transcript_55167.known	chr8	+	810	6	FSM	ENSMUSG00000002345.19	ENSMUST00000002418.15	810	6	0	0	0	0	multi-exon	TRUE	canonical	3	86	junction_5	44.6183818621877	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAAACCGTCTCTTTCCATG	8613	False	NA	17	True	AATACA	-11	NA	70592148	70599906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673_70597785_70598460_70598541_70599739
transcript_55171.known	chr8	+	756	4	FSM	ENSMUSG00000002345.19	ENSMUST00000123976.2	756	4	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	5.79271573232759	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCTCGAGCCTCAGCCAGC	8821	False	NA	11	True	AATAAA	-11	NA	70592356	70598185	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70592423_70594513_70594627_70595123_70595189_70597673
transcript_55172.known	chr8	+	3018	12	FSM	ENSMUSG00000002342.18	ENSMUST00000002413.15	3018	12	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	38.6768771547844	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGGATCCTTATCTTTT	5866	False	NA	NA	False	AATAAA	-44	NA	70625054	70636331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70625091_70626952_70627057_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
transcript_55178.known	chr8	+	2080	11	FSM	ENSMUSG00000002342.18	ENSMUST00000182980.8	2080	11	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	59.2504008425259	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGCTGCCTTACCATGGTG	5869	False	NA	7	True	AATAAA	-17	NA	70625057	70635500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70625091_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633500_70633585_70633700_70633798_70633974_70634079_70634177_70634532
transcript_55185.known	chr8	+	2109	11	FSM	ENSMUSG00000002342.18	ENSMUST00000147656.8	2109	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	71.0071123198233	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGTCTGGCCCAGTCATGT	5874	False	NA	32	True	AATAAA	-42	NA	70625062	70635525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70625091_70626952_70627057_70629494_70629576_70629890_70629989_70630101_70630259_70631516_70631669_70633188_70633250_70633355_70633519_70633798_70633974_70634079_70634177_70634532
transcript_55187.known	chr8	-	1804	6	FSM	ENSMUSG00000002346.17	ENSMUST00000150706.8	1804	6	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_1	6.11882341631134	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGTGTGTGGACAGTGTCT	NA	False	NA	NA	False	NA	NA	NA	70664955	70640365	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70641102_70641482_70642228_70642712_70642739_70644510_70644617_70646773_70646887_70664877
transcript_55189.nic	chr8	+	3611	12	NIC	ENSMUSG00000036054.16	novel	4609	11	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	90	junction_10	11.7353742277127	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGGCTCCTGTGCTGCC	1449	False	NA	26	True	AATAAA	-17	NA	70687232	70715755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_70687303_70689317_70689445_70695140_70696707_70701075_70701197_70704263_70704752_70706228_70706341_70709779_70710265_70711592_70711655_70712332_70712470_70713118_70713240_70713880_70713968_70715520
transcript_55192.known	chr8	-	2263	8	FSM	ENSMUSG00000002343.12	ENSMUST00000019679.12	2263	8	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	11.6741472616082	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTCTCATTTTTCTCACCT	4668	False	NA	0	True	TTTAAA	-1	NA	70687116	70672821	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70673528_70674755_70674894_70675167_70675300_70676193_70676340_70677549_70678124_70682177_70682261_70683929_70684057_70686759
transcript_55195.known	chr8	-	547	4	FSM	ENSMUSG00000002343.12	ENSMUST00000130319.2	547	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	44.5645599103144	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGCTGCCACTAGCAACCA	5008	False	NA	NA	False	NA	NA	NA	70686776	70677967	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70678124_70682177_70682261_70683929_70684057_70686595
transcript_55196.known	chr8	-	1414	4	FSM	ENSMUSG00000002343.12	ENSMUST00000135931.2	1414	4	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_3	12.0830459735946	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGAGCCTTGTCTGCCTTG	4685	False	NA	NA	False	AATAGA	-16	NA	70687099	70677259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70678124_70682177_70682261_70683929_70684057_70686759
transcript_55198.known	chr8	-	2137	13	FSM	ENSMUSG00000057788.14	ENSMUST00000008004.10	2137	13	0	0	0	0	multi-exon	TRUE	canonical	3	250	junction_9	19.6148682268211	210	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGGAATCCAATAGCTAC	9931	False	NA	-24	True	NA	NA	NA	70755139	70745515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70746338_70746477_70746550_70746648_70746738_70747336_70747412_70748016_70748115_70748224_70748302_70749032_70749109_70749552_70749694_70749780_70749969_70750525_70750648_70750730_70750817_70753628_70753753_70754972
transcript_55199.known	chr8	-	2163	13	FSM	ENSMUSG00000057788.14	ENSMUST00000144890.8	2163	13	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	78.7772439646543	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAGTACTGAGTTTGGAAT	9968	False	NA	-35	True	NA	NA	NA	70755102	70745526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70746338_70746477_70746550_70746648_70746738_70747336_70747486_70748016_70748115_70748224_70748302_70749032_70749109_70749552_70749694_70749780_70749969_70750525_70750648_70750730_70750817_70753628_70753753_70754972
transcript_55205.known	chr8	+	2445	10	FSM	ENSMUSG00000003573.16	ENSMUST00000110124.9	2445	10	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_9	38.9171326009065	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGGCTCCCTGAGAGGC	NA	False	NA	NA	False	AATAAA	-25	NA	70735648	70747011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70742043_70742152_70742701_70742824_70743656_70743814_70743967_70744079_70744166_70744254_70745624
transcript_55209.known	chr8	+	880	5	FSM	ENSMUSG00000003573.16	ENSMUST00000087467.12	880	5	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_4	81.1202810646018	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCCTTTTTTATTTGCTT	NA	False	NA	NA	False	ATTAAA	-9	NA	70735476	70739180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70735751_70737883_70737966_70738043_70738201_70738580_70738713_70738945
transcript_5521.known	chr10	+	1813	4	FSM	ENSMUSG00000019897.9	ENSMUST00000020049.9	1813	4	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_3	54.9201440477192	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGTGTAATAGAAGCGTT	NA	False	NA	NA	False	AATAAA	-18	NA	105676927	105683694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_105677517_105678402_105678710_105681210_105681311_105682877
transcript_55210.known	chr8	-	1441	7	FSM	ENSMUSG00000057788.14	ENSMUST00000138688.2	1441	7	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	14.1705876926667	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAACACAAAAGAAG	9957	False	NA	NA	False	NA	NA	NA	70755113	70748469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70749109_70749552_70749694_70749780_70749969_70750525_70750648_70750730_70750817_70753628_70753753_70754972
transcript_55215.known	chr8	+	1300	10	FSM	ENSMUSG00000055681.15	ENSMUST00000066469.14	1300	10	0	0	0	0	multi-exon	FALSE	canonical	3	1246	junction_3	49.1055803823899	1239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTCTGCCTGATACCCACCA	452	False	NA	26	True	AATAAA	-15	NA	70755167	70765640	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70755583_70757283_70757347_70758284_70758386_70759148_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
transcript_55231.known	chr8	+	2753	8	FSM	ENSMUSG00000055681.15	ENSMUST00000134822.8	2753	8	0	0	0	0	multi-exon	FALSE	canonical	3	1283	junction_7	34.9203174588744	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCCTGATACCCACCAGGC	703	False	NA	29	True	AATAAA	-18	NA	70755418	70765643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70755583_70757283_70759302_70760599_70760654_70761144_70761227_70762985_70763142_70764277_70764347_70765355_70765431_70765508
transcript_55233.known	chr8	+	1038	3	FSM	ENSMUSG00000055681.15	ENSMUST00000140363.2	1038	3	0	0	0	0	multi-exon	FALSE	canonical	3	1353	junction_1	23.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCGCTCCTGAAGAATGGGAT	675	False	NA	NA	False	NA	NA	NA	70755390	70759067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70755583_70757283_70757347_70758284
transcript_55234.known	chr8	+	2429	2	FSM	ENSMUSG00000055681.15	ENSMUST00000128822.2	2429	2	0	0	0	0	multi-exon	FALSE	canonical	3	1353	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGCAAG	727	False	NA	NA	False	TTTAAA	-8	NA	70755442	70759572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70755583_70757283
transcript_55235.known	chr8	+	1349	2	FSM	ENSMUSG00000109523.2	ENSMUST00000207684.2	1349	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGCGTTGGCGCAGGTGTG	5118	False	NA	NA	False	AAAAAG	-33	NA	70782466	70784237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70782927_70783348
transcript_55236.known	chr8	+	2416	19	FSM	ENSMUSG00000031849.10	ENSMUST00000003659.9	2416	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	1.24225998749988	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGCTGGCTTTGGTCGCTG	NA	False	NA	NA	False	AATAAA	-17	NA	70826207	70834716	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70826298_70826502_70826589_70827022_70827075_70827454_70827625_70828379_70828518_70828691_70828767_70828846_70829006_70829087_70829193_70829285_70829394_70829746_70829907_70831263_70831383_70831547_70831601_70831683_70831866_70832043_70832223_70832330_70832380_70832754_70832952_70833894_70834068_70834321_70834462_70834535
transcript_55237.known	chr8	-	5683	14	FSM	ENSMUSG00000003575.14	ENSMUST00000076615.6	5683	14	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_8	14.7616166270428	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGGCCTCTTCCTCTTTTTC	5213	False	NA	-4	True	AATAAA	-18	NA	70892229	70835004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70838986_70840190_70840372_70840724_70840812_70843851_70843954_70844510_70844814_70845571_70845706_70850395_70850605_70850945_70850987_70853268_70853355_70855080_70855176_70857908_70857971_70858727_70858866_70861544_70861662_70892082
transcript_55240.nnic	chr8	-	1001	5	NNC	ENSMUSG00000003575.14	novel	870	4	NA	NA	-81	536	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	29.1247317584214	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATATAGTAACTGCACACA	5132	False	NA	-15	True	NA	NA	NA	70892310	70856962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_70857419_70857908_70857971_70858727_70858866_70861544_70861662_70892082
transcript_55241.known	chr8	-	870	4	FSM	ENSMUSG00000003575.14	ENSMUST00000125613.8	870	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	6.48074069840786	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTTGTTCCCCAATGCG	5217	False	NA	NA	False	NA	NA	NA	70892225	70857498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70857971_70858727_70858866_70861544_70861662_70892082
transcript_55242.known	chr8	-	2991	3	FSM	ENSMUSG00000055707.14	ENSMUST00000066597.13	2991	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_2	2	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATGGAGCAGACCTGTGCT	NA	False	NA	-18	True	AATAAA	-16	NA	70929555	70902917	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70905670_70908115_70908299_70929499
transcript_55243.known	chr8	-	632	4	FSM	ENSMUSG00000058833.12	ENSMUST00000133683.8	632	4	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_3	338.518340222013	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70959076	70956944	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70958941
transcript_5525.known	chr10	-	2145	13	FSM	ENSMUSG00000036009.17	ENSMUST00000176924.8	2145	13	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_12	43.9515990102244	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACAAAATCATAGTGTTTT	NA	False	NA	NA	False	AATAAA	-9	NA	105677241	105599115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_105599323_105601080_105601153_105601824_105601900_105615448_105615543_105629200_105629275_105630222_105630253_105633085_105633181_105659020_105659172_105661858_105662453_105665708_105665816_105668711_105668877_105668965_105669142_105676936
transcript_55250.known	chr8	-	671	5	FSM	ENSMUSG00000058833.12	ENSMUST00000075175.12	671	5	0	0	0	0	multi-exon	FALSE	canonical	3	754	junction_4	53.0518614188041	597	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTTCCCATCAGCTCTGTA	NA	False	NA	-8	True	AATAAA	-17	NA	70959402	70956944	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70959146_70959230_70959311
transcript_55251.known	chr8	-	671	5	FSM	ENSMUSG00000058833.12	ENSMUST00000136913.2	671	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	340.250918441082	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGCTTTCCCATCAGCTC	NA	False	NA	-12	True	AATAAA	-13	NA	70959387	70956948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70957179_70957633_70957711_70958405_70958611_70959146_70959230_70959311
transcript_55252.known	chr8	-	725	4	FSM	ENSMUSG00000058833.12	ENSMUST00000135773.8	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	774	junction_3	46.3968389727864	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCATCAGCTCTGTATCT	NA	False	NA	-5	True	AATAAA	-20	NA	70959371	70956941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70957160_70957633_70957711_70958405_70958611_70959146
transcript_55256.known	chr8	+	1698	9	FSM	ENSMUSG00000019428.17	ENSMUST00000075491.14	1698	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	448.998590615828	737	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGCTTTCTAGGCCTCTT	NA	False	NA	25	True	AATAAA	-17	NA	70980396	70987976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70980487_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
transcript_5526.known	chr10	+	871	1	FSM	ENSMUSG00000112523.2	ENSMUST00000220086.2	871	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAATCTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	106018881	106019752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_106018900_106019800
transcript_55260.known	chr8	+	1799	9	FSM	ENSMUSG00000019428.17	ENSMUST00000119698.8	1799	9	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_1	286.852068800279	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGCTTTCTAGGCCTCTTT	NA	False	NA	26	True	AATAAA	-18	NA	70980495	70987977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70980686_70982040_70982326_70983589_70983760_70983834_70983924_70984171_70984393_70985226_70985400_70986766_70986845_70987132_70987265_70987516
transcript_5527.known	chr10	+	3355	25	FSM	ENSMUSG00000019907.11	ENSMUST00000219263.2	3355	25	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_12	28.3996466625125	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGTCACTGGACGCCGGAG	NA	False	NA	71	True	NA	NA	NA	107998053	108113212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_107998498_108034693_108034825_108050248_108050368_108066297_108066458_108069859_108070005_108075965_108076041_108076639_108076729_108076981_108077140_108078866_108078992_108085295_108085512_108086774_108086870_108087700_108087806_108088617_108088786_108089185_108089357_108095616_108095708_108096696_108096898_108097105_108097278_108098170_108098293_108100563_108100630_108103264_108103282_108104432_108104569_108105114_108105220_108107582_108107631_108109998_108110050_108113067
transcript_55272.known	chr8	-	884	7	FSM	ENSMUSG00000055553.17	ENSMUST00000121623.8	884	7	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_3	10409.9140993361	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGCAGTAATTGGTGTCTAG	NA	False	NA	-13	True	AATAAA	-19	NA	70975813	70960921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70968044_70968092_70971014_70971168_70972586_70972712_70975712
transcript_55273.known	chr8	-	917	7	FSM	ENSMUSG00000055553.17	ENSMUST00000138260.8	917	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_6	10452.4158770433	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTGACAAGATGATCTGCC	NA	False	NA	NA	False	NA	NA	NA	70980606	70961099	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70968044_70968092_70971014_70971168_70972586_70972712_70980294
transcript_55277.known	chr8	-	639	6	FSM	ENSMUSG00000055553.17	ENSMUST00000155677.8	639	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	323.170543212094	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATCCCACCCAGTATCACC	NA	False	NA	NA	False	NA	NA	NA	70975830	70966776	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70966819_70967244_70967399_70968044_70968092_70971014_70971168_70972586_70972712_70975712
transcript_55281.known	chr8	-	1216	5	FSM	ENSMUSG00000055553.17	ENSMUST00000093456.12	1216	5	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_4	146.224784150978	376	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTTATAGCAACAGTGGCT	NA	False	NA	-13	True	AATAAA	-20	NA	70975830	70966045	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70966819_70968044_70968092_70971014_70971168_70972586_70972712_70975712
transcript_55290.known	chr8	-	705	4	FSM	ENSMUSG00000090137.9	ENSMUST00000129909.8	705	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	10633.6606532694	347	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGTCTAGAGTGACTGT	NA	False	NA	-4	True	AATAAA	-28	NA	70963005	70960912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70962767
transcript_55291.known	chr8	-	541	4	FSM	ENSMUSG00000090137.9	ENSMUST00000081940.11	541	4	0	0	0	0	multi-exon	FALSE	canonical	3	1892	junction_3	9741.86690983247	5883	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTGGTGTCTAGAGTGAC	NA	False	NA	-7	True	AATAAA	-25	NA	70963067	70960915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70961179_70961945_70962033_70962170_70962282_70962987
transcript_55292.known	chr8	-	520	4	FSM	ENSMUSG00000090137.9	ENSMUST00000135446.8	520	4	0	0	0	0	multi-exon	FALSE	canonical	3	602	junction_3	10349.9061616787	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTCATACCTGGCATGTG	NA	False	NA	-69	True	AATAAA	-4	NA	70963451	70960977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_70961179_70961945_70962033_70962170_70962285_70963333
transcript_55295.known	chr8	+	3072	12	FSM	ENSMUSG00000070002.8	ENSMUST00000093454.8	3072	12	0	0	0	0	multi-exon	TRUE	canonical	3	95	junction_2	19.7818683154445	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCTCTGTGGTTTGAGTAT	NA	False	NA	8	True	AATAAA	-16	NA	70992337	71045508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_70992492_71025512_71025561_71031486_71031609_71031742_71031907_71034204_71034471_71036521_71036647_71037806_71037886_71038203_71038679_71043169_71043231_71043343_71043516_71044019_71044065_71044147
transcript_55296.known	chr8	+	1836	11	FSM	ENSMUSG00000019139.11	ENSMUST00000019283.10	1836	11	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	49.1426495012225	275	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTCCTTGTGTGCTTTT	NA	False	NA	18	True	AATAAA	-14	NA	71047130	71049938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71047922_71048010_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
transcript_55299.known	chr8	+	1916	10	FSM	ENSMUSG00000019139.11	ENSMUST00000210878.2	1916	10	0	0	0	0	multi-exon	FALSE	canonical	3	300	junction_1	45.5894183087303	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AAGCCTCCTTGTGTGCTTTT	NA	False	NA	18	True	AATAAA	-14	NA	71047139	71049938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71047194_71047269_71047399_71047472_71047635_71047788_71048205_71048354_71048505_71048599_71048816_71048897_71049063_71049145_71049260_71049343_71049562_71049646
transcript_5530.nic	chr10	+	2496	16	ISM	ENSMUSG00000019907.11	ENSMUST00000219263.2	3355	25	-108	16420	-108	7455	5prime_fragment	TRUE	canonical	3	168	junction_12	22.3352238005851	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAAAGGAAAAGCAGGA	NA	False	NA	NA	False	NA	NA	NA	107997945	108096792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_107998498_108034693_108034825_108050248_108050368_108066297_108066458_108069859_108070005_108075965_108076041_108076639_108076729_108076981_108077140_108078866_108078992_108085295_108085512_108086774_108086870_108087700_108087806_108088617_108088786_108089185_108089357_108095616_108095708_108096696
transcript_55306.known	chr8	-	1475	17	FSM	ENSMUSG00000070003.8	ENSMUST00000049908.11	1475	17	0	0	0	0	multi-exon	TRUE	canonical	3	428	junction_1	289.200298236361	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTACTGCTGATGTCT	NA	False	NA	-10	True	AATAAA	-17	NA	71060964	71050139	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71050419_71050662_71050771_71050855_71050885_71051188_71051268_71051351_71051423_71051503_71051559_71051642_71051679_71051767_71051814_71052023_71052095_71052174_71052246_71052337_71052408_71052489_71052550_71053045_71053136_71054881_71054967_71055050_71055113_71055223_71055297_71060774
transcript_55309.nnic	chr8	-	1386	4	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-168	0	at_least_one_novel_splicesite	FALSE	canonical	3	33	junction_3	120.610484158256	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCGTCTCAGTGACCTTG	486	False	NA	-6	True	AATAAA	-18	NA	71085274	71082042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_71082825_71083982_71084242_71084799_71085030_71085159
transcript_55310.nnic	chr8	-	1337	4	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-205	0	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_3	126.388290596875	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCGTCTCAGTGACCTTG	449	False	NA	-6	True	AATAAA	-18	NA	71085311	71082042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_71082825_71083982_71084242_71084799_71085030_71085245
transcript_55311.nnic	chr8	-	1434	4	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-165	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	128.073763468124	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCGTCTCAGTGACCTTG	489	False	NA	-6	True	AATAAA	-18	NA	71085271	71082042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_71082825_71083982_71084275_71084799_71085030_71085141
transcript_55313.nnic	chr8	-	1370	4	NNC	ENSMUSG00000038508.8	novel	1380	3	NA	NA	-205	0	at_least_one_novel_splicesite	FALSE	canonical	1	14	junction_3	127.146459731375	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCGTCTCAGTGACCTTG	449	False	NA	-6	True	AATAAA	-18	NA	71085311	71082042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_71082825_71083982_71084275_71084799_71085030_71085245
transcript_55315.known	chr8	-	1545	2	FSM	ENSMUSG00000038508.8	ENSMUST00000003808.8	1545	2	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_1	0	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGCGTCTCAGTGACCTTG	1015	False	NA	-6	True	AATAAA	-18	NA	71084745	71082042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71082825_71083982
transcript_55316.known	chr8	-	1380	3	FSM	ENSMUSG00000038508.8	ENSMUST00000110103.2	1380	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	118	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGGCGTCTCAGTGACCTT	654	False	NA	-7	True	AATAAA	-17	NA	71085106	71082043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71082825_71083982_71084275_71084799
transcript_55318.known	chr8	-	4883	5	FSM	ENSMUSG00000056204.9	ENSMUST00000070173.9	4883	5	0	0	0	0	multi-exon	TRUE	canonical	3	150	junction_1	24.3554408705735	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGCATCCAGTGTCACCT	NA	False	NA	-5	True	AATAAA	-18	NA	71112388	71099084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71103436_71103831_71104065_71105054_71105172_71110077_71110131_71112259
transcript_55321.nnic	chr8	-	1663	5	NNC	ENSMUSG00000056204.9	novel	4883	5	NA	NA	-52	296	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_4	80.0199193951106	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAGAGGGTATTTGTTGT	NA	False	NA	-13	True	NA	NA	NA	71113090	71102531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_71103436_71103831_71104065_71105054_71105172_71110077_71110131_71112734
transcript_55331.known	chr8	+	925	5	FSM	ENSMUSG00000031848.16	ENSMUST00000034311.15	925	5	0	0	0	0	multi-exon	FALSE	canonical	3	2963	junction_1	310.191070148707	3010	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGCTGTTCTTCTGCCTA	NA	False	NA	20	True	AATAAA	-20	NA	71125897	71131402	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71126108_71129204_71129247_71130427_71130527_71130603_71130785_71131009
transcript_55332.known	chr8	+	636	4	FSM	ENSMUSG00000031848.16	ENSMUST00000210987.2	636	4	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_2	1451.48498671763	462	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAAGAGCCAGCTGTTCTTC	NA	False	NA	14	True	AATAAA	-14	NA	71126081	71131396	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71126108_71129204_71129247_71130603_71130785_71131009
transcript_55333.nnic	chr8	+	1155	5	NNC	ENSMUSG00000095026.3	novel	1149	4	NA	NA	-37	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	14.4308696896618	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTAAAGTCTCACGATTCA	NA	False	NA	NA	False	CATAAA	-3	NA	71171154	71175283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_71171282_71173068_71173135_71173167_71173378_71174425_71174587_71174692
transcript_55334.known	chr8	+	1149	4	FSM	ENSMUSG00000095026.3	ENSMUST00000179347.3	1149	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	14.4299072146089	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGTAAAGTCTCACGATT	NA	False	NA	NA	False	CATAAA	-1	NA	71171191	71175281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71171282_71173068_71173378_71174425_71174587_71174692
transcript_55335.known	chr8	+	842	3	FSM	ENSMUSG00000095026.3	ENSMUST00000213065.2	842	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	4.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTAAAGTCTCACGATTCA	NA	False	NA	NA	False	CATAAA	-3	NA	71171191	71175283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71171282_71174425_71174587_71174692
transcript_55337.known	chr8	+	1363	5	FSM	ENSMUSG00000031840.15	ENSMUST00000034301.12	1363	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	7.43303437365925	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACACGCAGTCCTTGACAT	NA	False	NA	46	True	NA	NA	NA	71207359	71211281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71207513_71208502_71208731_71209093_71209213_71209783_71209909_71210543
transcript_55338.known	chr8	-	980	5	FSM	ENSMUSG00000035559.10	ENSMUST00000038626.10	980	5	0	0	0	0	multi-exon	FALSE	canonical	3	649	junction_3	27.2304976083802	243	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGCGTGTGGGTGGGTT	NA	False	NA	-2	True	ATTAAA	-17	NA	71213592	71211294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71211671_71211754_71211884_71212036_71212114_71213013_71213185_71213365
transcript_55340.nnic	chr8	-	1056	5	NNC	ENSMUSG00000035559.10	novel	980	5	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	3	72	junction_3	276.99311814556	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGCGTGTGGGTGGGTT	NA	False	NA	-2	True	ATTAAA	-17	NA	71213627	71211294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_71211671_71211754_71211884_71212036_71212155_71213013_71213185_71213365
transcript_55342.nic	chr8	-	1099	4	NIC	ENSMUSG00000035559.10	novel	980	5	NA	NA	-35	0	intron_retention	FALSE	canonical	3	649	junction_2	30.408332191468	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGACTGCGTGTGGGTGGGTT	NA	False	NA	-2	True	ATTAAA	-17	NA	71213627	71211294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_71211884_71212036_71212114_71213013_71213185_71213365
transcript_55346.known	chr8	-	3165	16	FSM	ENSMUSG00000031834.16	ENSMUST00000034296.15	3165	16	0	0	0	0	multi-exon	TRUE	canonical	3	127	junction_15	21.8259784049498	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGTGTCTTTGGGGACTGG	NA	False	NA	-8	True	NA	NA	NA	71229357	71220819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71221542_71221705_71221877_71221991_71222064_71222232_71222410_71222548_71222692_71223020_71223147_71223227_71223409_71223490_71223590_71223697_71223807_71223932_71224019_71224476_71224676_71224776_71224909_71224995_71225047_71225246_71225340_71227299_71227997_71229250
transcript_55348.known	chr8	-	980	7	FSM	ENSMUSG00000031838.11	ENSMUST00000222087.4	980	7	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_6	19.0065778087482	329	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTCCTTTTTCCTAGAGTTG	NA	False	NA	-15	True	AATAAA	-18	NA	71219307	71215418	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71215686_71215772_71215827_71216371_71216525_71217191_71217285_71217363_71217439_71217563_71217747_71219152
transcript_55355.known	chr8	-	746	3	FSM	ENSMUSG00000031834.16	ENSMUST00000146707.2	746	3	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	3.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGGTGAACACGCGCAGGA	NA	False	NA	NA	False	NA	NA	NA	71222308	71221283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71221542_71221705_71221877_71221991
transcript_55357.known	chr8	-	2355	8	FSM	ENSMUSG00000002910.12	ENSMUST00000002989.11	2355	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	35.6330504688314	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGCCGTCTTTTCATTTG	NA	False	NA	-1	True	AATAAA	-20	NA	71292364	71287772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71288639_71288863_71289022_71289501_71289665_71289753_71290011_71290087_71290191_71291337_71291486_71291622_71291690_71291771
transcript_55358.known	chr8	-	2528	11	FSM	ENSMUSG00000002908.18	ENSMUST00000212611.2	2528	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	10.4446158378372	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAACTGGAGTAAGATACAA	NA	False	NA	NA	False	NA	NA	NA	71315902	71296549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71297206_71299138_71299209_71299407_71299417_71300818_71300947_71301421_71301533_71303243_71303386_71305297_71305717_71307270_71307367_71307644_71308122_71314308_71314418_71315591
transcript_5536.known	chr10	+	438	3	FSM	ENSMUSG00000020185.17	ENSMUST00000173294.8	438	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	16.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGGAGGTAAGATTTGTGTT	NA	False	NA	NA	False	AATACA	-24	NA	110581299	110584007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_110581541_110582192_110582286_110583903
transcript_55360.known	chr8	-	1356	5	FSM	ENSMUSG00000007721.7	ENSMUST00000007865.7	1356	5	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_4	97.9030132324843	447	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCCATGTCTGTATGTGTG	NA	False	NA	-5	True	AATAAA	-18	NA	71326579	71320870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71321290_71321380_71321496_71321576_71321752_71322548_71322719_71326102
transcript_55365.known	chr8	-	700	5	FSM	ENSMUSG00000045128.10	ENSMUST00000212709.2	700	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	13791.0578727667	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCCTTGCTTGTTTGCTTC	NA	False	NA	-19	True	AATAAA	-11	NA	71349927	71348026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71349772
transcript_55366.known	chr8	-	576	5	FSM	ENSMUSG00000045128.10	ENSMUST00000213053.2	576	5	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_4	13769.0618144447	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACACAGAGACCCACTGAATA	NA	False	NA	-51	True	NA	NA	NA	71350039	71348058	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71349976
transcript_55367.known	chr8	-	1260	5	FSM	ENSMUSG00000045128.10	ENSMUST00000054220.10	1260	5	0	0	0	0	multi-exon	FALSE	canonical	3	16397	junction_4	7934.97659101777	360	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGGCATCTGGTCTATA	NA	False	NA	NA	False	NA	NA	NA	71350056	71347365	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348776_71348957_71350002
transcript_55368.known	chr8	-	578	5	FSM	ENSMUSG00000045128.10	ENSMUST00000212129.2	578	5	0	0	0	0	multi-exon	FALSE	canonical	1	58	junction_3	13957.9624766654	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350044	71348022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71348152_71348243_71348354_71348559_71348690_71348789_71348957_71350002
transcript_5537.known	chr10	+	3567	13	FSM	ENSMUSG00000020185.17	ENSMUST00000173471.8	3567	13	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	10.7480618407848	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAGTTGCAGGAAGGAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	110581373	110621371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_110581541_110582179_110582286_110589941_110590221_110595678_110595848_110599787_110600079_110601476_110601636_110602977_110603113_110610502_110610689_110611179_110611250_110614679_110615164_110616627_110616884_110618058_110618481_110620528
transcript_55371.known	chr8	-	795	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212019.2	795	4	0	0	0	0	multi-exon	FALSE	canonical	3	16397	junction_3	7846.8208565989	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350042	71348022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71348152_71348243_71348690_71348776_71348957_71350002
transcript_55372.known	chr8	-	679	4	FSM	ENSMUSG00000045128.10	ENSMUST00000212796.2	679	4	0	0	0	0	multi-exon	FALSE	canonical	3	16397	junction_3	7152.95244403782	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGCTTGTTTGCTTCTATG	NA	False	NA	-15	True	AATAAA	-15	NA	71350040	71348022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71348354_71348559_71348690_71348776_71348957_71350002
transcript_55375.known	chr8	+	3314	7	FSM	ENSMUSG00000019261.4	ENSMUST00000019405.4	3314	7	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_1	20.5236990384829	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTTGGTCTTACTGTCTT	NA	False	NA	13	True	AATAAA	-13	NA	71358575	71370171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71358772_71363588_71363694_71364489_71364573_71365156_71365298_71365549_71367639_71368994_71369219_71369695
transcript_55377.nnic	chr8	+	1053	5	NIC	ENSMUSG00000019261.4	novel	3323	8	NA	NA	-17	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	129.617466029853	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTCTTACTGTCTTAT	NA	False	NA	15	True	AATAAA	-15	NA	71358608	71370173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_71358772_71363588_71363694_71364489_71364573_71368994_71369219_71369695
transcript_55378.nnic	chr8	+	843	3	NIC	ENSMUSG00000019261.4	novel	4635	5	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_1	161.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGTCTTACTGTCTTAT	NA	False	NA	15	True	AATAAA	-15	NA	71358630	71370173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_71358772_71368994_71369219_71369695
transcript_5538.nnic	chr10	+	913	6	NNC	ENSMUSG00000020186.8	novel	736	3	NA	NA	32	0	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	81.7620939066509	22	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAACCTTTCAGAGGAGCTG	NA	False	NA	31	True	AATAAA	-32	NA	110767520	110775375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_110767624_110767815_110767929_110771008_110771178_110773597_110773728_110774497_110774592_110775071
transcript_55387.nnic	chr8	-	1505	11	NNC	ENSMUSG00000035439.14	novel	2013	11	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	3	63	junction_2	129.85010589137	23	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	566	False	NA	-9	True	NA	NA	NA	71725150	71703768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_71704189_71705714_71705819_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71721869_71721929_71724927
transcript_55388.known	chr8	-	1452	11	FSM	ENSMUSG00000035439.14	ENSMUST00000110071.3	1452	11	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_7	129.467524885587	545	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	696	False	NA	-9	True	NA	NA	NA	71725020	71703768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709196_71709999_71710070_71715695_71715749_71721869_71721929_71724927
transcript_55394.nic	chr8	-	1526	10	NIC	ENSMUSG00000035439.14	novel	2013	11	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_9	153.13787864713	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACAGTGTGATGCGTTTG	566	False	NA	-9	True	NA	NA	NA	71725150	71703768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71708651_71708765_71709102_71709199_71709999_71710070_71715695_71715749_71724927
transcript_55395.known	chr8	-	3987	10	FSM	ENSMUSG00000035439.14	ENSMUST00000123495.8	3987	10	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	195.273091456333	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACAAAAAAAAAAAAAGAATT	612	False	NA	NA	False	AAAAAG	-1	NA	71725104	71701204	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71704189_71705714_71705899_71707164_71707307_71708050_71708210_71708290_71708357_71709102_71709196_71709999_71710070_71715695_71715749_71721869_71721929_71724927
transcript_5540.nnic	chr10	+	2742	3	NNC	ENSMUSG00000035759.5	novel	2744	2	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCATGTAAGTTAATTGT	NA	False	NA	NA	False	AATAAA	-20	NA	111134517	111137588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_111134769_111135073_111137471_111137494
transcript_55403.known	chr8	-	471	4	FSM	ENSMUSG00000035439.14	ENSMUST00000128833.2	471	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	232.32496398125	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGCTTAACAAAATGTGTG	714	False	NA	NA	False	NA	NA	NA	71725002	71712870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71713155_71715695_71715749_71721869_71721929_71724927
transcript_55404.known	chr8	+	973	9	FSM	ENSMUSG00000002395.15	ENSMUST00000110054.8	973	9	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	224.605626599157	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819585	71822376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71819723_71819878_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
transcript_5541.known	chr10	+	2744	2	FSM	ENSMUSG00000035759.5	ENSMUST00000040454.5	2744	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCATGTAAGTTAATTGT	NA	False	NA	NA	False	AATAAA	-20	NA	111134539	111137588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_111134769_111135073
transcript_55412.known	chr8	+	854	8	FSM	ENSMUSG00000002395.15	ENSMUST00000019169.8	854	8	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	107.997165495683	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819860	71822376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71820014_71820287_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
transcript_55413.known	chr8	+	1000	8	FSM	ENSMUSG00000002395.15	ENSMUST00000154550.8	1000	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	297.542656862947	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACATGTCTTCAGTGCTAG	NA	False	NA	22	True	AATAAA	-23	NA	71819860	71822376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71820014_71820141_71820338_71820413_71820493_71820602_71820756_71821193_71821207_71821493_71821522_71821775_71821948_71822170
transcript_55414.known	chr8	+	1611	4	FSM	ENSMUSG00000002396.9	ENSMUST00000002469.9	1611	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	9.2736184954957	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCTGGCCTTGAACCGAGAT	NA	False	NA	NA	False	NA	NA	NA	71823982	71826333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71824630_71825111_71825278_71825392_71825447_71825589
transcript_55415.nic	chr8	+	749	3	NIC	ENSMUSG00000002396.9	novel	1611	4	NA	NA	435	199	intron_retention	FALSE	canonical	3	45	junction_1	9	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTACTGTGTGCAGCTACCT	NA	False	NA	9	True	AGTAAA	-14	NA	71824424	71825798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_71824630_71825111_71825447_71825589
transcript_55416.known	chr8	+	2179	3	FSM	ENSMUSG00000002396.9	ENSMUST00000110051.2	2179	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	15.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TTAAAAAAAGAAATCAGTCT	NA	False	NA	NA	False	AATAAA	-24	NA	71823941	71827026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71824630_71825392_71825447_71825589
transcript_55418.nnic	chr8	-	1566	8	NNC	ENSMUSG00000034911.9	novel	2438	13	NA	NA	-943	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	3.14934395500694	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTCCTTTGTCCCTGGCA	NA	False	NA	NA	False	NA	NA	NA	71843873	71838012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_71838438_71838559_71838683_71838830_71838917_71839993_71840222_71841399_71841650_71842664_71842830_71843284_71843426_71843725
transcript_5542.known	chr10	+	3047	1	FSM	ENSMUSG00000035759.5	ENSMUST00000219990.2	3047	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAAGCATGTAAGTTAATT	NA	False	NA	NA	False	AATAAA	-18	NA	111134539	111137586	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_111134500_111137600
transcript_55421.known	chr8	+	1433	9	FSM	ENSMUSG00000031820.10	ENSMUST00000002473.10	1433	9	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_4	29.4573314303927	185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGTATGGCTTCAGGC	NA	False	NA	89	True	ACTAAA	-7	NA	71849504	71857263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71849665_71850322_71850670_71851035_71851095_71852169_71852291_71852372_71852452_71854323_71854349_71855389_71855520_71855619_71855707_71856838
transcript_55428.known	chr8	+	1641	9	FSM	ENSMUSG00000046295.14	ENSMUST00000120725.2	1641	9	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	33.431833632034	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGGACAGTGTGTTTTCTTG	NA	False	NA	NA	False	NA	NA	NA	71858667	71862127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859916_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
transcript_55429.known	chr8	+	2136	9	FSM	ENSMUSG00000046295.14	ENSMUST00000119976.8	2136	9	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_4	30.5366071298041	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTACTTTGTCTCCATGTC	NA	False	NA	18	True	NA	NA	NA	71858653	71862548	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71858742_71858830_71858984_71859322_71859429_71859505_71859618_71859856_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
transcript_5543.nnic	chr10	+	1367	16	NNC	ENSMUSG00000058799.17	novel	1486	16	NA	NA	-50	0	at_least_one_novel_splicesite	TRUE	canonical	1	35	junction_5	641.6635532392	38	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	23	True	AATAAA	-25	NA	111309033	111332745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111325899_111326274_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
transcript_55430.known	chr8	+	2410	7	FSM	ENSMUSG00000046295.14	ENSMUST00000125290.8	2410	7	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_6	8.31998931623246	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAACAACAACAAAGCCA	NA	False	NA	-18	True	NA	NA	NA	71858659	71862512	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71858742_71858830_71858984_71859322_71860394_71860514_71860687_71861308_71861469_71861565_71861696_71861870
transcript_55431.known	chr8	-	1978	5	FSM	ENSMUSG00000007950.10	ENSMUST00000008094.10	1978	5	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	6.41774882649672	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCCTCCAATTTGTGATT	NA	False	NA	-6	True	NA	NA	NA	71916299	71909348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71910022_71910681_71910899_71911021_71911193_71913889_71914617_71916109
transcript_55433.nnic	chr8	-	1260	4	NIC	ENSMUSG00000007950.10	novel	1978	5	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	26.7124606795322	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCCTCCAATTTGTGATT	NA	False	NA	-6	True	NA	NA	NA	71916308	71909348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_71910022_71910681_71910899_71911021_71911193_71916109
transcript_55434.known	chr8	+	607	2	FSM	ENSMUSG00000034880.8	ENSMUST00000048914.8	607	2	0	0	0	0	multi-exon	FALSE	canonical	3	904	junction_1	0	599	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACTACGTATGTATTAACT	8920	False	NA	18	True	AATAAA	-18	NA	71917602	71918391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71917712_71917893
transcript_55435.known	chr8	+	1929	5	FSM	ENSMUSG00000074247.11	ENSMUST00000135052.8	1929	5	0	0	0	0	multi-exon	FALSE	canonical	2	81	junction_1	303.826739277503	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921842	71928742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71921970_71924684_71924762_71924838_71924891_71926418_71926481_71927131
transcript_55437.known	chr8	+	1865	4	FSM	ENSMUSG00000074247.11	ENSMUST00000147642.2	1865	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	377.602966090045	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921848	71928742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71921970_71924680_71924762_71924838_71924891_71927131
transcript_55438.known	chr8	+	1881	4	FSM	ENSMUSG00000074247.11	ENSMUST00000130098.8	1881	4	0	0	0	0	multi-exon	FALSE	canonical	2	31	junction_2	319.275568888208	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCCTGTGTATTTTTCTG	NA	False	NA	13	True	NA	NA	NA	71921842	71928742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71921970_71924680_71924762_71926418_71926481_71927131
transcript_5544.known	chr10	+	1486	16	FSM	ENSMUSG00000058799.17	ENSMUST00000065917.16	1486	16	0	0	0	0	multi-exon	FALSE	canonical	3	684	junction_15	463.449884621364	221	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGATGCTGTCTCGGTTTG	NA	False	NA	23	True	AATAAA	-25	NA	111309083	111332745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900_111331967_111332614
transcript_55440.known	chr8	+	874	4	FSM	ENSMUSG00000074247.11	ENSMUST00000098645.11	874	4	0	0	0	0	multi-exon	FALSE	canonical	2	515	junction_3	146.765875537273	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGAGCCCGTGCCAGGGCA	NA	False	NA	NA	False	NA	NA	NA	71921854	71927618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71921970_71924680_71924891_71926418_71926481_71927131
transcript_55442.known	chr8	+	2392	9	FSM	ENSMUSG00000007610.16	ENSMUST00000127741.2	2392	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	23.9892554073694	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCCTTTCCCTCGAACT	NA	False	NA	139	True	NA	NA	NA	71941394	71946044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943298_71943612_71943709_71943854_71944068_71944235_71944720_71945000_71945182
transcript_55444.known	chr8	+	2800	9	FSM	ENSMUSG00000007610.16	ENSMUST00000007754.13	2800	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	23.9892554073694	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCCTTTCCCTCGAACT	NA	False	NA	139	True	NA	NA	NA	71940746	71946044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943538_71943612_71943709_71943854_71944068_71944235_71944720_71945000_71945182
transcript_55446.nic	chr8	+	1411	8	ISM	ENSMUSG00000007610.16	ENSMUST00000007754.13	2800	9	603	969	-15	-969	5prime_fragment	FALSE	canonical	0	0	junction_4	25.2303671905787	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATCCCTCAGCCTCAGTT	NA	False	NA	NA	False	NA	NA	NA	71941349	71945075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943538_71943612_71943709_71943854_71944068_71944235_71944720
transcript_55448.known	chr8	+	2109	8	FSM	ENSMUSG00000007610.16	ENSMUST00000095259.10	2109	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_4	25.5774135055258	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTCCTTTCCCTCGAACT	NA	False	NA	139	True	NA	NA	NA	71941364	71946044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71941485_71941714_71941963_71942071_71942159_71942978_71943182_71943709_71943854_71944068_71944235_71944720_71945000_71945182
transcript_55451.known	chr8	-	1987	6	FSM	ENSMUSG00000034845.7	ENSMUST00000048452.6	1987	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	7.60526133673262	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGGTTTGTATTTGTTTG	NA	False	NA	NA	False	AATAAA	-18	NA	71964396	71950408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71951050_71959480_71959563_71959663_71959722_71960244_71960952_71961107_71961205_71963994
transcript_55453.known	chr8	-	792	5	FSM	ENSMUSG00000046718.9	ENSMUST00000051672.9	792	5	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_3	21.2176223927187	295	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGCTTGCTTCTAAGTTGCT	NA	False	NA	NA	False	AATAAA	-17	NA	71990100	71986898	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_71987125_71987315_71987437_71988429_71988470_71989002_71989079_71989771
transcript_55460.known	chr8	+	1062	9	FSM	ENSMUSG00000031813.9	ENSMUST00000034272.9	1062	9	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_1	32.3177582762171	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGGAGTGTATTGTTTT	NA	False	NA	11	True	AGTAAA	-18	NA	71995573	72000670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71995702_71995776_71995876_71996030_71996128_71997867_71997995_71998190_71998311_71998393_71998501_71999616_71999679_72000221_72000279_72000405
transcript_55469.known	chr8	+	387	3	FSM	ENSMUSG00000031813.9	ENSMUST00000212234.2	387	3	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_1	42.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTGAGCAGGAAGGCACAAC	NA	False	NA	NA	False	NA	NA	NA	71995582	71996199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71995702_71995776_71995876_71996030
transcript_55470.known	chr8	+	1519	2	FSM	ENSMUSG00000031813.9	ENSMUST00000212341.2	1519	2	0	0	0	0	multi-exon	FALSE	canonical	3	346	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGGGCTGGAGCATTAGC	NA	False	NA	NA	False	NA	NA	NA	71995571	71997165	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_71995702_71995776
transcript_55471.nic	chr8	+	2657	12	ISM	ENSMUSG00000031808.8	ENSMUST00000034267.5	2795	14	1728	0	0	0	3prime_fragment	FALSE	canonical	1	37	junction_10	35.20847005532	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTGTTTTGTATTTT	NA	False	NA	NA	False	NA	NA	NA	72023298	72039352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_72023533_72032047_72032443_72032550_72032713_72032788_72032859_72033253_72033346_72033410_72033521_72036761_72036972_72037063_72037191_72037276_72037415_72037485_72037651_72037989_72038137_72038545
transcript_55474.known	chr8	+	893	5	FSM	ENSMUSG00000031807.11	ENSMUST00000034264.11	893	5	0	0	0	0	multi-exon	FALSE	canonical	3	546	junction_2	58.7132864009502	188	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTTTCTGTGGTTCTT	NA	False	NA	15	True	ATTAAA	-15	NA	72044819	72048913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72045149_72046727_72046836_72047312_72047415_72047704_72047846_72048700
transcript_55475.known	chr8	+	1062	5	FSM	ENSMUSG00000031807.11	ENSMUST00000143441.2	1062	5	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	254.639941878724	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTATTGTTTCTGTGGTTCTT	NA	False	NA	15	True	ATTAAA	-15	NA	72044934	72048913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72045433_72046727_72046836_72047312_72047415_72047704_72047846_72048700
transcript_55477.known	chr8	+	2834	13	FSM	ENSMUSG00000043243.16	ENSMUST00000124485.8	2834	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.27770467785634	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTTTTTAAATATGTTTA	NA	False	NA	-7	True	CATAAA	-11	NA	72050425	72060568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72050468_72051721_72051853_72052713_72052840_72053058_72053174_72054742_72055133_72055204_72055310_72055407_72055571_72056280_72056472_72056564_72056724_72057381_72057499_72057571_72058363_72059304_72059389_72060148
transcript_5548.known	chr10	+	1350	15	FSM	ENSMUSG00000058799.17	ENSMUST00000217908.2	1350	15	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_10	363.653962004586	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTCATTTACTTACAGC	NA	False	NA	-11	True	NA	NA	NA	111309102	111331980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655_111330686_111331185_111331237_111331900
transcript_55480.known	chr8	-	944	8	FSM	ENSMUSG00000034799.17	ENSMUST00000176777.8	944	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	16.3682120998886	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTGTTATATATAACAAGTTG	NA	False	NA	3	True	NA	NA	NA	72124385	72112984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_72113294_72114462_72114496_72115124_72115180_72115483_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72124269
transcript_55481.nic	chr8	-	930	8	NIC	ENSMUSG00000034799.17	novel	10255	44	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_6	3.4166459266004	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACGTGTGTTATATATAACA	NA	False	NA	-2	True	NA	NA	NA	72124391	72112989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_72113294_72114462_72114496_72115124_72115180_72115498_72115573_72115806_72115931_72116802_72116921_72118622_72118723_72124269
transcript_55484.known	chr8	+	2860	4	FSM	ENSMUSG00000034807.10	ENSMUST00000212706.2	2860	4	0	0	0	0	multi-exon	FALSE	canonical	3	843	junction_1	70.0618774132314	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAAGTCTTTGGGTTTGGT	NA	False	NA	25	True	ATTAAA	-17	NA	72073326	72077550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72073499_72074407_72075475_72075733_72075941_72076136
transcript_55485.known	chr8	+	4009	24	FSM	ENSMUSG00000031805.18	ENSMUST00000110013.10	4009	24	0	0	0	0	multi-exon	TRUE	canonical	3	153	junction_6	28.4113052926296	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAGAAAAGATGGTTTGTG	NA	False	NA	-4	True	AATGAA	-4	NA	72128939	72141200	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72129228_72130972_72131166_72131320_72131445_72131621_72131734_72131845_72131992_72132202_72132489_72133078_72133202_72133283_72133442_72133526_72133639_72134144_72134332_72134706_72134832_72134925_72135058_72135543_72135629_72135975_72136104_72136596_72136730_72136860_72137013_72137127_72137279_72137809_72137950_72138028_72138219_72138392_72138518_72138596_72138770_72139498_72139617_72139882_72139994_72140683
transcript_55490.known	chr8	-	3055	3	FSM	ENSMUSG00000031803.9	ENSMUST00000034260.9	3055	3	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_2	27	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTACTGTCTATTGTGCAC	8521	False	NA	NA	False	NA	NA	NA	72154433	72143399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_72145800_72145960_72146544_72154361
transcript_55496.known	chr8	-	3188	28	FSM	ENSMUSG00000070000.14	ENSMUST00000146100.8	3188	28	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_17	36.1995308763152	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCATAGCTGTGATTTTT	NA	False	NA	-6	True	NA	NA	NA	72178360	72161037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_72161476_72161569_72161735_72161973_72162030_72162218_72162419_72162637_72162771_72162982_72163139_72163641_72163751_72163848_72163937_72164036_72164144_72164694_72164938_72165113_72165209_72165543_72165596_72165944_72165970_72166058_72166236_72166618_72166679_72166915_72166941_72167343_72167417_72167526_72167572_72168120_72168218_72168328_72168428_72169200_72169306_72169415_72169569_72169785_72169928_72170079_72170155_72170930_72171023_72173895_72173949_72174462_72174504_72178276
transcript_55501.known	chr8	+	7186	4	FSM	ENSMUSG00000056019.13	ENSMUST00000188685.7	7186	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	3.85861230093008	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCGCATGTTGGTCTGTC	NA	False	NA	NA	False	NA	NA	NA	72635862	72649571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72636053_72641107_72641235_72641444_72641506_72642763
transcript_55503.known	chr8	+	2920	4	FSM	ENSMUSG00000066880.16	ENSMUST00000119003.2	2920	4	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_3	7.78888096369861	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTAGTGTTCTATTGCTGT	NA	False	NA	29	True	AATAAA	-17	NA	72676695	72688473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72676817_72682045_72682173_72682981_72683043_72685862
transcript_55507.known	chr8	+	2713	4	FSM	ENSMUSG00000052446.18	ENSMUST00000109997.10	2713	4	0	0	0	0	multi-exon	FALSE	canonical	3	347	junction_3	51.1468474101777	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGTTTGTAGAGACTCTT	NA	False	NA	16	True	AATAAA	-18	NA	72704914	72724177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72705005_72719637_72719765_72719943_72720005_72721742
transcript_55508.known	chr8	+	504	4	FSM	ENSMUSG00000052446.18	ENSMUST00000145256.8	504	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	168.256418071413	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAATATGTAAAGAAATAC	NA	False	NA	NA	False	AATACA	-16	NA	72704913	72721897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72705005_72719637_72719835_72719943_72720005_72721742
transcript_55509.known	chr8	+	422	3	FSM	ENSMUSG00000052446.18	ENSMUST00000147033.2	422	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	200	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTTTTTGTTTGTTTGTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	72704924	72720088	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72705005_72719637_72719835_72719943
transcript_55510.known	chr8	+	416	3	FSM	ENSMUSG00000052446.18	ENSMUST00000139781.8	416	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	148.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTGTGAGAAAGCCTTCAG	NA	False	NA	NA	False	NA	NA	NA	72704920	72722013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72705005_72719943_72720005_72721742
transcript_55511.known	chr8	+	701	2	FSM	ENSMUSG00000052446.18	ENSMUST00000144807.2	701	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATTCCAGCCATGTTCAA	NA	False	NA	NA	False	NA	NA	NA	72704923	72722362	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72705005_72721742
transcript_55513.known	chr8	+	2158	8	FSM	ENSMUSG00000031799.11	ENSMUST00000003575.11	2158	8	0	0	0	0	multi-exon	FALSE	canonical	3	688	junction_1	35.3714978074559	285	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGATTTATTCTTTTA	NA	False	NA	NA	False	AATAAA	-18	NA	72889072	72906986	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72889298_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
transcript_55515.known	chr8	+	2044	8	FSM	ENSMUSG00000031799.11	ENSMUST00000238492.2	2044	8	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_1	228.433708510092	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTGGATTTATTCTTT	NA	False	NA	NA	False	AATAAA	-16	NA	72889651	72906984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72889765_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
transcript_55516.nnic	chr8	+	2216	8	NNC	ENSMUSG00000031799.11	novel	2044	8	NA	NA	52	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_1	253.461424831376	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCTGGATTTATTCTTT	NA	False	NA	NA	False	AATAAA	-16	NA	72889703	72906984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_72889989_72892431_72892566_72897293_72897412_72898521_72898593_72900295_72900372_72900900_72900964_72901041_72901112_72905585
transcript_55519.known	chr8	+	4550	8	FSM	ENSMUSG00000003037.17	ENSMUST00000003121.9	4550	8	0	0	0	0	multi-exon	FALSE	canonical	3	900	junction_6	72.9808473617062	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATACCCTGCAGTAGCAAGTT	NA	False	NA	NA	False	NA	NA	NA	72915043	72937748	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72915327_72922270_72922332_72925083_72925145_72928369_72928448_72929683_72929774_72930166_72930233_72931463_72931515_72933888
transcript_55523.known	chr8	+	1824	6	FSM	ENSMUSG00000062007.14	ENSMUST00000072097.14	1824	6	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	2.28035085019828	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTTTGCATCATTTGCG	NA	False	NA	NA	False	NA	NA	NA	72943481	72955371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72943532_72947282_72947430_72950639_72950730_72951582_72951749_72952211_72952332_72954120
transcript_55527.nic	chr8	-	617	3	ISM	ENSMUSG00000074240.6	ENSMUST00000098630.5	585	5	5368	-43	5368	0	3prime_fragment	FALSE	canonical	3	13	junction_2	0.5	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGGATCTCTGCCTTTTGC	NA	False	NA	NA	False	AATAAA	-18	NA	72961295	72958178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_72958275_72959406_72959603_72960970
transcript_55528.known	chr8	+	2564	4	FSM	ENSMUSG00000003039.10	ENSMUST00000003123.10	2564	4	0	0	0	0	multi-exon	FALSE	canonical	3	920	junction_3	34.4705993887867	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACTGCTGCAGTCCTAAAAA	NA	False	NA	NA	False	NA	NA	NA	72973573	72978262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72973705_72973784_72973927_72975771_72975826_72976025
transcript_55533.known	chr8	+	3387	3	FSM	ENSMUSG00000003039.10	ENSMUST00000212117.2	3387	3	0	0	0	0	multi-exon	FALSE	canonical	3	920	junction_2	33.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAACTTTGTGCGTGAAAC	NA	False	NA	18	True	AATATA	-14	NA	72973607	72977274	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72973705_72973784_72975826_72976025
transcript_55535.known	chr8	+	2084	12	FSM	ENSMUSG00000003033.16	ENSMUST00000003117.15	2084	12	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_9	40.3802177244139	199	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGTCTTCTCTCTGTGT	NA	False	NA	19	True	ATTAAA	-20	NA	72993861	73011229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_72994088_73000482_73000640_73002956_73003025_73003592_73003724_73004524_73004673_73005586_73005714_73006678_73006822_73007052_73007125_73007318_73007478_73009540_73009667_73009950_73010027_73010578
transcript_55540.known	chr8	-	1151	1	FSM	ENSMUSG00000070713.6	ENSMUST00000075602.8	1151	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAATAAAAAAAAT	NA	False	NA	NA	False	AATAAA	-22	NA	73059104	73057953	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_73058000_73059100
transcript_55542.nnic	chr8	+	795	2	NIC	ENSMUSG00000055148.8	novel	1847	3	NA	NA	-70	-305	combination_of_known_splicesites	FALSE	canonical	3	215	junction_1	0	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGGTAGTGGTGTGGCTG	NA	False	NA	34	True	ATTAAA	-21	NA	73072806	73075195	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_73072994_73074587
transcript_55543.known	chr8	+	1847	3	FSM	ENSMUSG00000055148.8	ENSMUST00000067912.8	1847	3	0	0	0	0	multi-exon	FALSE	canonical	3	2955	junction_2	16	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCTTGGGGTTTAGCCAA	NA	False	NA	21	True	ATTAAA	-16	NA	73072876	73075500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_73072994_73073269_73074087_73074587
transcript_55544.known	chr8	-	3129	24	FSM	ENSMUSG00000006276.11	ENSMUST00000163643.3	3129	24	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_2	82.9540606689901	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACATGAGACTATCTTCT	NA	False	NA	NA	False	TATAAA	-39	NA	73175304	73094842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_73095369_73099809_73100016_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_55547.nnic	chr8	-	2979	23	NIC	ENSMUSG00000006276.11	novel	3129	24	NA	NA	-52	4	combination_of_known_splicesites	FALSE	canonical	3	42	junction_1	80.7011756547953	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGAGACTATCTTCTTTTT	NA	False	NA	NA	False	TATAAA	-43	NA	73175356	73094838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_73095369_73112156_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_55551.nic	chr8	-	2840	22	NIC	ENSMUSG00000006276.11	novel	2686	22	NA	NA	-52	0	combination_of_known_junctions	FALSE	canonical	3	75	junction_1	69.7814859566126	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAACATGAGACTATCTT	NA	False	NA	NA	False	TATAAA	-37	NA	73175356	73094844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_73095369_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_55552.known	chr8	-	3376	16	FSM	ENSMUSG00000006276.11	ENSMUST00000212590.2	3376	16	0	0	0	0	multi-exon	FALSE	canonical	3	313	junction_2	26.4222128772995	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTCTTTGTTCAGTGTTCC	NA	False	NA	NA	False	AATAAA	-13	NA	73175299	73131261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_55554.known	chr8	-	2620	22	FSM	ENSMUSG00000006276.11	ENSMUST00000212950.2	2620	22	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	58.0603720511769	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTCTATCTAGTAGCCTC	NA	False	NA	NA	False	NA	NA	NA	73175282	73111911	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_73112290_73121747_73121831_73122555_73122617_73125529_73125667_73126869_73126921_73127666_73127791_73132834_73133000_73133952_73134151_73134737_73134900_73135260_73135334_73136170_73136257_73136523_73136681_73138610_73138769_73140704_73140933_73143251_73143312_73145733_73145860_73150077_73150141_73150745_73150842_73152849_73152898_73153520_73153611_73154035_73154078_73175248
transcript_55555.known	chr8	-	1769	9	FSM	ENSMUSG00000019732.15	ENSMUST00000019876.12	1769	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	4.64858849544676	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAAAATATTTTGTTT	9998	False	NA	NA	False	AATAAA	-15	NA	73197714	73178019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_73178600_73179610_73179704_73181005_73181138_73181913_73182010_73185216_73185406_73188633_73188729_73192275_73192480_73197238_73197341_73197436
transcript_55558.known	chr8	-	3646	18	FSM	ENSMUSG00000052488.8	ENSMUST00000212991.2	3646	18	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_13	64.9317448394025	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATAAGACACTTGATTTTT	NA	False	NA	-2	True	AATAAA	-31	NA	73229070	73214473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_73215200_73215279_73215466_73215592_73215688_73215823_73215947_73216020_73216165_73216247_73216335_73216644_73216779_73216921_73217161_73217927_73218364_73220226_73220403_73221606_73221887_73222043_73222134_73222218_73222331_73223707_73223860_73223933_73224072_73224714_73224900_73228455_73228630_73228901
transcript_55559.known	chr8	+	2887	8	FSM	ENSMUSG00000052794.14	ENSMUST00000064853.13	2887	8	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	11.7334338276463	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGTCAGGAGTCAGAAAATC	NA	False	NA	NA	False	ATTAAA	-15	NA	73197723	73214845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_73197834_73198593_73199315_73203293_73203586_73205202_73205277_73208957_73209412_73211816_73211913_73212446_73212614_73213872
transcript_5556.known	chr10	+	1365	13	FSM	ENSMUSG00000058799.17	ENSMUST00000219143.2	1365	13	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_10	384.309843167665	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTTTTTTTTATTTCA	NA	False	NA	4	True	AATAAA	-21	NA	111309141	111330870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111326031_111326237_111326319_111326869_111326999_111327947_111328020_111328702_111328843_111329157_111329304_111329410_111329431_111330031_111330155_111330655
transcript_55560.nic	chr8	+	1565	3	ISM	ENSMUSG00000052794.14	ENSMUST00000121902.2	2373	8	-79	10485	-27	-8495	5prime_fragment	FALSE	canonical	3	59	junction_1	1.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGTAGTCTGAAAGGTGA	NA	False	NA	NA	False	NA	NA	NA	73197696	73204000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_73197834_73198593_73199315_73203293
transcript_55561.known	chr8	-	2997	3	FSM	ENSMUSG00000045248.7	ENSMUST00000058534.7	2997	3	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	2.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACCAGTTTTGGAATCATT	3617	False	NA	-5	True	AATAAA	-15	NA	73302114	73248404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_73250951_73251366_73251442_73301738
transcript_55562.known	chr8	-	2892	5	FSM	ENSMUSG00000044600.15	ENSMUST00000167290.8	2892	5	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_4	37.7582772382427	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCAGTCTATCTACTCCTAT	NA	False	NA	1	True	AATAAA	-27	NA	73324932	73319031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_73321653_73322699_73322791_73323809_73323863_73324717_73324760_73324847
transcript_55566.known	chr8	+	2124	6	FSM	ENSMUSG00000031791.9	ENSMUST00000034244.9	2124	6	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	8.51821577561874	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCTCTTTTTCTTTATTCA	NA	False	NA	NA	False	AATAAA	-18	NA	73325916	73341126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_73326072_73333406_73333564_73333803_73333989_73335028_73335117_73338543_73338662_73339705
transcript_55568.known	chr8	+	820	5	FSM	ENSMUSG00000031791.9	ENSMUST00000211914.2	820	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_2	20.2484567313166	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCCCGCCCTGCTCTCTAC	NA	False	NA	NA	False	AAGAAA	-40	NA	73325934	73340025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_73326072_73333406_73333564_73335028_73335117_73338543_73338662_73339705
transcript_55573.known	chr8	+	1024	7	FSM	ENSMUSG00000031622.17	ENSMUST00000109950.5	1024	7	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_5	27.2197844713485	570	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAGTTATGTGCAGCAGT	NA	False	NA	24	True	AATAAA	-21	NA	73449912	73466534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996_73466117_73466357
transcript_55575.known	chr8	+	1257	6	FSM	ENSMUSG00000031622.17	ENSMUST00000212095.2	1257	6	0	0	0	0	multi-exon	FALSE	canonical	3	644	junction_5	28.5587114555261	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATTTAGTTATGTGCAGC	NA	False	NA	21	True	AATAAA	-18	NA	73449917	73466531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_73450037_73450671_73450779_73452164_73452319_73457708_73457907_73459972_73460117_73465996
transcript_55577.known	chr8	+	2267	15	FSM	ENSMUSG00000042870.16	ENSMUST00000165630.3	2267	15	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	29.4884965464743	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGCTCTGGCGGAAGCAA	NA	False	NA	12	True	AATAAA	-25	NA	75760332	75796749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_75760456_75774620_75774706_75776817_75776897_75778135_75778286_75778550_75778686_75778777_75778925_75781204_75781322_75783782_75783917_75785068_75785103_75785440_75785535_75787060_75787182_75791021_75791098_75794149_75794210_75795723_75795764_75795877
transcript_55582.known	chr8	+	3989	12	FSM	ENSMUSG00000034518.15	ENSMUST00000145919.2	3989	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_2	21.8858798209528	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCAGTCTTAGCTGTCTTT	NA	False	NA	32	True	ATTAAA	-23	NA	75720306	75758606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_75720378_75725462_75725567_75726187_75726337_75726440_75726520_75726626_75726742_75727277_75728213_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
transcript_55588.known	chr8	+	2656	7	FSM	ENSMUSG00000034518.15	ENSMUST00000109940.2	2656	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	40.0489284084689	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATTACAGTTGTATAAAGAAA	NA	False	NA	-33	True	AATAAA	-25	NA	75742849	75758541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_75743035_75746871_75746954_75748430_75748496_75749826_75749933_75750625_75750796_75756115_75756239_75756616
transcript_55590.nic	chr8	+	1289	6	ISM	ENSMUSG00000034518.15	ENSMUST00000145919.2	3989	12	-50	30608	-50	62	5prime_fragment	FALSE	canonical	3	57	junction_2	17.0926884953772	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAAGGACAAAGACAGAC	NA	False	NA	NA	False	NA	NA	NA	75720256	75727998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_75720378_75725462_75725567_75726187_75726337_75726440_75726520_75726626_75726742_75727277
transcript_55594.known	chr8	+	1569	5	FSM	ENSMUSG00000005413.9	ENSMUST00000005548.8	1569	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	104.358456772798	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGAAGTGCATTCATGTC	NA	False	NA	10	True	AATAAA	-19	NA	75820248	75827217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_75820401_75822483_75822605_75823477_75823970_75825393_75825494_75826513
transcript_55595.nnic	chr8	+	1607	5	NNC	ENSMUSG00000005413.9	novel	1569	5	NA	NA	119	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_1	92.3102784092866	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAGAAGTGCATTCATGTC	NA	False	NA	10	True	AATAAA	-19	NA	75820367	75827217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_75820558_75822483_75822605_75823477_75823970_75825393_75825494_75826513
transcript_55598.known	chr8	+	2604	17	FSM	ENSMUSG00000005410.7	ENSMUST00000212426.2	2604	17	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_1	269.284113147712	375	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTAGTGCTGTGTGAATACA	NA	False	NA	32	True	AATAAA	-45	NA	75836203	75854321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_75836226_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
transcript_55601.known	chr8	+	3381	17	FSM	ENSMUSG00000005410.7	ENSMUST00000164309.3	3381	17	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_1	234.54782794507	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGCCTGGCTGAAGTGTTTG	NA	False	NA	1	True	NA	NA	NA	75836196	75855067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_75836250_75836327_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
transcript_55607.known	chr8	+	2653	16	FSM	ENSMUSG00000005410.7	ENSMUST00000212811.2	2653	16	0	0	0	0	multi-exon	FALSE	canonical	3	1402	junction_7	114.72564374774	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGATAGTAGTGCTGTGTGA	NA	False	NA	27	True	AATAAA	-40	NA	75836251	75854316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_75836503_75836717_75836845_75836927_75837057_75839171_75839345_75840792_75840949_75842479_75842647_75844149_75844322_75845884_75845997_75847407_75847552_75847839_75847906_75848165_75848343_75849619_75849733_75850468_75850598_75851428_75851572_75852864_75852993_75853850
transcript_55608.known	chr8	+	2781	12	FSM	ENSMUSG00000037134.18	ENSMUST00000056237.15	2781	12	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	20.627751506924	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGTGTATGTAACATTAT	NA	False	NA	13	True	AATAAA	-18	NA	78276025	78307967	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_78276366_78282293_78282443_78285507_78285745_78287435_78287604_78289042_78289146_78290604_78290712_78291582_78291776_78294803_78294988_78298637_78299356_78303966_78304121_78307254_78307378_78307662
transcript_55610.nic	chr8	-	2467	11	NIC	ENSMUSG00000031617.17	novel	2678	10	NA	NA	-86	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_10	23.2381152419898	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTCTTACGTGTCTTCT	NA	False	NA	-4	True	TTTAAA	-6	NA	78337413	78322610	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_78323810_78324437_78324610_78325182_78325283_78326285_78326399_78328043_78328138_78329486_78329562_78331250_78331457_78332792_78332830_78332915_78333047_78336731_78336949_78337290
transcript_55612.known	chr8	-	2678	10	FSM	ENSMUSG00000031617.17	ENSMUST00000034030.15	2678	10	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_5	10.9927024053615	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAACTCTTACGTGTCTTCT	NA	False	NA	-4	True	TTTAAA	-6	NA	78337282	78322610	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_78323810_78324437_78324610_78325182_78325283_78326285_78326399_78328043_78328138_78329486_78329562_78331250_78331457_78332792_78332830_78332915_78333047_78336731
transcript_55614.known	chr8	+	673	3	FSM	ENSMUSG00000037101.17	ENSMUST00000124713.2	673	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	1	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAGTTGTAAAAAGAAGATT	NA	False	NA	NA	False	NA	NA	NA	79117610	79120403	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_79118107_79119699_79119767_79120293
transcript_55615.known	chr8	-	377	1	FSM	ENSMUSG00000110057.2	ENSMUST00000209570.2	377	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGGTTCAATCAGCTGTAC	NA	False	NA	NA	False	NA	NA	NA	79213039	79212662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_79212700_79213000
transcript_55616.known	chr8	-	1695	2	FSM	ENSMUSG00000037070.11	ENSMUST00000049245.10	1695	2	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_1	0	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTGTCTTGATTTCTCC	NA	False	NA	NA	False	AGTAAA	-18	NA	79235527	79231897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_79233493_79235427
transcript_55617.known	chr8	-	1622	2	FSM	ENSMUSG00000037070.11	ENSMUST00000211719.2	1622	2	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	0	380	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGGCAATTTTCTGTCTTG	NA	False	NA	NA	False	AGTAAA	-10	NA	79235508	79231905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_79233447_79235427
transcript_55618.known	chr8	+	3595	12	FSM	ENSMUSG00000031684.12	ENSMUST00000034111.10	3595	12	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_5	15.4524062690615	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCTGGAAATGTCGTGG	NA	False	NA	32	True	ATTAAA	-17	NA	79235996	79460632	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_79236304_79242214_79242298_79251790_79251928_79257711_79257788_79305347_79305387_79389615_79389652_79413213_79413298_79423794_79423961_79425148_79425201_79433503_79433578_79456246_79456393_79458237
transcript_55625.known	chr8	-	3792	5	FSM	ENSMUSG00000031683.17	ENSMUST00000130325.8	3792	5	0	0	0	0	multi-exon	FALSE	canonical	3	636	junction_4	242.43865203387	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGATCTTTCCCATCTATG	NA	False	NA	NA	False	GATAAA	-24	NA	79547769	79531493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79546615_79546715_79547676
transcript_55632.known	chr8	-	2107	4	FSM	ENSMUSG00000031683.17	ENSMUST00000051867.7	2107	4	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_3	374.138417641861	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACAGTTGCCACCATCT	NA	False	NA	NA	False	AGTAAA	-27	NA	79547769	79533079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_79534875_79536575_79536690_79539604_79539710_79547676
transcript_55637.nnic	chr8	-	1648	8	NIC	ENSMUSG00000037022.4	novel	1685	8	NA	NA	-70	0	combination_of_known_splicesites	FALSE	canonical	1	2	junction_7	26.4073273690374	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTAGAGTTTCCCTGA	NA	False	NA	-6	True	AATAAA	-17	NA	80021636	79994536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80004830_80004954_80007805_80008284_80010837_80011076_80021542
transcript_55638.known	chr8	-	5650	7	FSM	ENSMUSG00000037022.4	ENSMUST00000048718.4	5650	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_6	17.5214154679352	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTGTATCTTGTTCTGTA	NA	False	NA	NA	False	AATAAA	-17	NA	80021566	79990226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80004830_80004954_80007805_80008284_80021542
transcript_55640.nnic	chr8	-	762	5	NIC	ENSMUSG00000037022.4	novel	5650	7	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_4	28.7782469931718	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTAGAGTTTCCCTGA	NA	False	NA	-6	True	AATAAA	-17	NA	80021589	79994536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_79994845_79995761_79995912_79997518_79997605_80000732_80000904_80021542
transcript_55641.known	chr8	-	3099	7	FSM	ENSMUSG00000031681.17	ENSMUST00000066091.14	3099	7	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_2	13.1835335003767	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCATTTTTTTTCTTTG	NA	False	NA	15	True	AATAAA	-33	NA	80126147	80065023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_80066422_80070282_80070540_80076219_80076442_80079958_80080076_80082840_80083099_80098412_80098994_80125881
transcript_55643.known	chr8	-	3793	18	FSM	ENSMUSG00000058355.9	ENSMUST00000080536.8	3793	18	0	0	0	0	multi-exon	FALSE	canonical	3	1167	junction_10	93.0334984503433	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTTTTTTGACTTCTTT	NA	False	NA	NA	False	AATACA	-13	NA	80438369	80410090	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_80411907_80412573_80412686_80414069_80414193_80414292_80414436_80414523_80414635_80415753_80415813_80415936_80415997_80416865_80417088_80420052_80420175_80425975_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
transcript_55646.nnic	chr8	-	2809	12	NNC	ENSMUSG00000058355.9	novel	3793	18	NA	NA	-31	-183	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	385.382561889176	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGCTTACCGGTGTGTG	NA	False	NA	-10	True	AATAAA	-18	NA	80438330	80410273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_80411907_80412573_80412686_80414069_80414193_80426020_80426066_80427214_80427312_80427541_80427612_80427743_80427882_80428402_80428521_80429632_80429731_80433862_80433949_80435051_80435182_80438171
transcript_55655.nnic	chr8	+	856	5	NIC	ENSMUSG00000036977.9	novel	2801	5	NA	NA	-73	8	combination_of_known_splicesites	FALSE	canonical	3	195	junction_1	137.767920794356	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAGTCAATCTTTAAAT	NA	False	NA	10	True	AATAAA	-28	NA	80438375	80501979	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_80438474_80439781_80439909_80446286_80446378_80455758_80455880_80501560
transcript_55656.nnic	chr8	+	914	5	NIC	ENSMUSG00000036977.9	novel	2801	5	NA	NA	-73	66	combination_of_known_splicesites	FALSE	canonical	3	195	junction_1	137.767920794356	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCAAGATATATATACTAT	NA	False	NA	17	True	ATTAAA	-23	NA	80438375	80502037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_80438474_80439781_80439909_80446286_80446378_80455758_80455880_80501560
transcript_55657.known	chr8	+	2801	5	FSM	ENSMUSG00000036977.9	ENSMUST00000048147.9	2801	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	177.95698216142	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTGTGGATTTATGAC	NA	False	NA	NA	False	NA	NA	NA	80438448	80503949	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_80438474_80439733_80439909_80446286_80446378_80455758_80455880_80501560
transcript_55659.known	chr8	+	4591	5	FSM	ENSMUSG00000036977.9	ENSMUST00000210812.2	4591	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	166.717388115337	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	80438479	80505688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_80438604_80439781_80439909_80446286_80446378_80455758_80455880_80501560
transcript_55661.nnic	chr8	+	938	5	NIC	ENSMUSG00000036977.9	novel	4591	5	NA	NA	-8	8	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	204.767398528184	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGAAGTCAATCTTTAAAT	NA	False	NA	10	True	AATAAA	-28	NA	80438471	80501979	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_80438604_80439733_80439909_80446286_80446378_80455758_80455880_80501560
transcript_55662.nnic	chr8	+	996	5	NIC	ENSMUSG00000036977.9	novel	4591	5	NA	NA	-8	66	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	204.767398528184	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTCAAGATATATATACTAT	NA	False	NA	17	True	ATTAAA	-23	NA	80438471	80502037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_80438604_80439733_80439909_80446286_80446378_80455758_80455880_80501560
transcript_55666.known	chr8	-	9074	13	FSM	ENSMUSG00000064325.5	ENSMUST00000079038.4	9074	13	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	3.65433532488012	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTTCTTGTGCCCTTTTA	4306	False	NA	-2	True	ATTAAA	-17	NA	80784635	80692481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_80699156_80701623_80701773_80713564_80713647_80715876_80716008_80716874_80716999_80719102_80719225_80723351_80723496_80724083_80724258_80724787_80724940_80770574_80770777_80771679_80771837_80778056_80778250_80783865
transcript_55668.nnic	chr8	-	3985	10	NNC	ENSMUSG00000031714.10	novel	4870	10	NA	NA	21222	0	at_least_one_novel_splicesite	FALSE	canonical	3	380	junction_6	37.5443770345651	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGAGCTGTGTTACT	NA	False	NA	-9	True	AATAAA	-15	NA	81585903	81491068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_81493117_81496279_81496403_81501178_81501303_81501562_81501657_81511255_81511560_81511729_81511816_81515118_81515724_81518017_81518244_81526729_81527025_81585823
transcript_55669.known	chr8	-	4707	10	FSM	ENSMUSG00000038250.10	ENSMUST00000042724.8	4707	10	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_4	8.95392871906924	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCCTACTGTCCTGTTTT	NA	False	NA	-9	True	ATTAAA	-14	NA	81741557	81707361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_81708610_81711066_81712430_81714115_81714223_81716635_81716730_81719824_81720019_81722310_81722470_81727681_81727784_81731960_81732091_81738795_81738932_81740383
transcript_55675.known	chr8	-	1675	10	FSM	ENSMUSG00000031711.8	ENSMUST00000034147.4	1675	10	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	43.069567612422	609	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTACTTTTGGTACTGAGTT	NA	False	NA	-17	True	AATAAA	-17	NA	83500789	83490249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83497429_83497501_83497967_83497988_83499508_83499641_83500685
transcript_55680.known	chr8	-	761	8	FSM	ENSMUSG00000031711.8	ENSMUST00000211462.2	761	8	0	0	0	0	multi-exon	FALSE	canonical	2	30	junction_6	164.077259054311	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGATACTGGATACCATG	NA	False	NA	-47	True	NA	NA	NA	83500743	83491026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_83491121_83491483_83491602_83492640_83492688_83493297_83493403_83493841_83493969_83495948_83496029_83499508_83499641_83500685
transcript_55684.known	chr8	-	4319	9	FSM	ENSMUSG00000035151.13	ENSMUST00000053902.4	4319	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_4	7.29297607290741	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTCTGTGGATGCTTGA	8170	False	NA	3	True	AATAAA	-23	NA	84059115	84039650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84043091_84043429_84043564_84044359_84044429_84046042_84046177_84048061_84048192_84049295_84049394_84055740_84055770_84057739_84057888_84058978
transcript_55687.known	chr8	+	2293	15	FSM	ENSMUSG00000002190.14	ENSMUST00000109831.3	2293	15	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_5	6.81834260787527	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATGAGAGCCAAGAGATTCG	NA	False	NA	12	True	AATAAA	-18	NA	84116506	84153460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_84116730_84122071_84122222_84123630_84123708_84124277_84124337_84126577_84126720_84134782_84134865_84136114_84136308_84136978_84137169_84146832_84146947_84147047_84147199_84149649_84149866_84150701_84150828_84151199_84151363_84152153_84152255_84153154
transcript_55690.known	chr8	-	409	4	FSM	ENSMUSG00000063253.12	ENSMUST00000212031.2	409	4	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_1	12.1928941054479	262	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTGCTGCTTTTTTTCTTCC	7419	False	NA	NA	False	AGTAAA	-26	NA	84169134	84162500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84162670_84164181_84164266_84164613_84164686_84169050
transcript_55692.known	chr8	+	623	3	FSM	ENSMUSG00000033938.6	ENSMUST00000036996.6	623	3	0	0	0	0	multi-exon	FALSE	canonical	3	2087	junction_2	87.5	1027	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCATCTGTGCTACTTCAA	NA	False	NA	23	True	AATAAA	-23	NA	84293299	84298255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_84293560_84297458_84297628_84298061
transcript_55697.known	chr8	-	1272	13	FSM	ENSMUSG00000031708.18	ENSMUST00000163837.2	1272	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_10	1132.45025644985	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84321058	84298328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300337_84300552_84301106_84301158_84320968
transcript_55699.known	chr8	-	1158	13	FSM	ENSMUSG00000031708.18	ENSMUST00000019382.17	1158	13	0	0	0	0	multi-exon	FALSE	canonical	3	3555	junction_3	302.48290814891	1356	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84321106	84298328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300039_84300085_84300499_84300552_84301106_84301158_84320968
transcript_5570.nnic	chr10	+	719	8	NNC	ENSMUSG00000058799.17	novel	1365	13	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	741.875312698729	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTTTTTTTTTATTTCA	NA	False	NA	4	True	AATAAA	-21	NA	111309087	111330870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_111309213_111317140_111317178_111321359_111321446_111322504_111322608_111325888_111325899_111329410_111329431_111330031_111330155_111330655
transcript_55706.known	chr8	-	1120	12	FSM	ENSMUSG00000031708.18	ENSMUST00000165740.9	1120	12	0	0	0	0	multi-exon	FALSE	canonical	3	487	junction_9	1051.54616581631	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGACTGTGTGTTCTTTA	NA	False	NA	-5	True	AATAAA	-13	NA	84321113	84298328	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84298565_84298641_84298688_84298860_84298950_84299026_84299085_84299177_84299222_84299309_84299383_84299469_84299576_84299656_84299773_84299848_84299953_84300499_84300552_84301106_84301158_84320968
transcript_5574.known	chr10	+	5023	10	FSM	ENSMUSG00000063334.17	ENSMUST00000163048.8	5023	10	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_6	38.1443004172444	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGCTCTTGTAGTGTTT	NA	False	NA	NA	False	NA	NA	NA	111808568	111824337	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813143_111813219_111813304_111814995_111815053_111815791_111815963_111818705_111818784_111818868_111818963_111820443
transcript_55744.known	chr8	+	2996	3	FSM	ENSMUSG00000005483.11	ENSMUST00000005620.10	2996	3	0	0	0	0	multi-exon	FALSE	canonical	3	562	junction_2	45.5	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACATACGAGGTGCTCGGCT	NA	False	NA	NA	False	AATAAA	-23	NA	84334821	84339282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_84335172_84336442_84337024_84337217
transcript_55749.known	chr8	+	1522	7	FSM	ENSMUSG00000019433.10	ENSMUST00000019577.10	1522	7	0	0	0	0	multi-exon	FALSE	canonical	3	964	junction_1	101.245027312731	307	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGGAACTCATTCTGTAGAC	NA	False	NA	16	True	NA	NA	NA	84379305	84391323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_84379367_84387587_84387910_84388583_84388770_84388863_84389045_84389677_84389791_84390548_84390631_84390746
transcript_5575.known	chr10	+	3451	9	FSM	ENSMUSG00000063334.17	ENSMUST00000075924.8	3451	9	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_5	40.3978263647934	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTATGTTGGGCTCTTTCT	NA	False	NA	NA	False	AAGAAA	-16	NA	111808679	111822799	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_111808780_111811389_111811563_111812646_111812782_111813016_111813304_111814995_111815053_111815791_111815963_111818705_111818784_111818868_111818963_111820443
transcript_55757.known	chr8	+	1551	12	FSM	ENSMUSG00000005481.19	ENSMUST00000140521.8	1551	12	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	911.296107223839	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCATGGCTCCAGCCCCA	NA	False	NA	26	True	AATAAA	-12	NA	84441896	84449904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
transcript_55759.known	chr8	+	1927	11	FSM	ENSMUSG00000005481.19	ENSMUST00000127505.8	1927	11	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_5	947.235852362019	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGCATGGCTCCAGCCCC	NA	False	NA	25	True	AATAAA	-11	NA	84441896	84449903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448094_84448154_84448362_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
transcript_55761.known	chr8	+	1656	11	FSM	ENSMUSG00000005481.19	ENSMUST00000019576.15	1656	11	0	0	0	0	multi-exon	FALSE	canonical	3	2216	junction_5	95.6715736256073	1468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAACGTGCCATCTTTTT	NA	False	NA	99	True	NA	NA	NA	84441805	84449977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_84441967_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
transcript_55765.known	chr8	+	1794	11	FSM	ENSMUSG00000005481.19	ENSMUST00000109810.2	1794	11	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_1	682.0140834323	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAAACGTGCCATCTTTTT	NA	False	NA	99	True	NA	NA	NA	84442176	84449977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_84442476_84446015_84446228_84446440_84446569_84447177_84447271_84447585_84447770_84448362_84448482_84448858_84448991_84449077_84449188_84449277_84449423_84449515_84449664_84449753
transcript_55778.known	chr8	-	2867	19	FSM	ENSMUSG00000002885.15	ENSMUST00000109802.3	2867	19	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_15	26.9886235749276	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGGCACGTTTGCTGGTGA	NA	False	NA	-11	True	ATTAAA	-19	NA	84467802	84449992	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84460042_84460196_84460637_84460755_84460924_84460982_84467735
transcript_55779.known	chr8	-	3000	20	FSM	ENSMUSG00000002885.15	ENSMUST00000075843.13	3000	20	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_16	54.4176930653952	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCACGTTTGCTGGTGAGA	NA	False	NA	-9	True	ATTAAA	-21	NA	84467798	84449990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84450532_84450607_84450707_84450820_84450990_84451066_84451159_84451246_84451317_84451397_84451628_84451783_84451976_84452493_84452659_84454373_84454598_84454723_84454841_84454909_84455070_84455685_84455764_84455885_84455933_84456010_84456155_84456739_84456887_84458531_84458667_84460042_84460196_84460637_84460755_84460924_84460982_84467735
transcript_55780.known	chr8	+	1788	4	FSM	ENSMUSG00000005470.9	ENSMUST00000005607.9	1788	4	0	0	0	0	multi-exon	FALSE	canonical	3	543	junction_2	3.39934634239519	399	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTTTTGCTTTTTTCTCTC	5716	False	NA	23	True	AATAAA	-16	NA	84682135	84696826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_84682567_84691659_84691776_84694462_84694640_84695762
transcript_55783.known	chr8	+	1291	6	FSM	ENSMUSG00000046408.16	ENSMUST00000060357.15	1291	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	1.32664991614216	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTGTCTTGTGAGCAC	5069	False	NA	NA	False	AATAAA	-16	NA	84728130	84731399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_84728535_84729486_84729632_84729744_84729846_84729924_84730111_84730553_84730689_84731079
transcript_55784.known	chr8	-	1351	3	FSM	ENSMUSG00000074217.9	ENSMUST00000190457.2	1351	3	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_2	17	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCAGTGCAAGCTATTTTC	7533	False	NA	-9	True	AATAAA	-22	NA	84738787	84736850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84737122_84737339_84737402_84737769
transcript_55785.known	chr8	-	2664	14	FSM	ENSMUSG00000005465.10	ENSMUST00000005601.9	2664	14	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_12	6.10848667572056	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGCCAGAGTGCCTTAAC	5259	False	NA	NA	False	NA	NA	NA	84769218	84756922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84757822_84757941_84758051_84758147_84758239_84758645_84758772_84760579_84760739_84760820_84760923_84762713_84762903_84762991_84763176_84765924_84765999_84766106_84766264_84767302_84767461_84767560_84767719_84768715_84768834_84769078
transcript_55786.known	chr8	+	2452	7	FSM	ENSMUSG00000047986.13	ENSMUST00000055077.7	2452	7	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	39.9110121255887	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGATTTATTTATT	NA	False	NA	11	True	ATTAAA	-24	NA	84748099	84756924	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_84748158_84750980_84751030_84752822_84752904_84753377_84753521_84753628_84753714_84754754_84754801_84754934
transcript_55787.nic	chr8	+	2464	5	ISM	ENSMUSG00000047986.13	ENSMUST00000055077.7	2452	7	4604	0	0	0	3prime_fragment	FALSE	canonical	3	94	junction_2	4.49305018890286	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAGATTTATTTATT	NA	False	NA	11	True	ATTAAA	-24	NA	84752703	84756924	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_84752904_84753377_84753521_84753628_84753714_84754754_84754801_84754934
transcript_55789.known	chr8	-	634	2	FSM	ENSMUSG00000045232.5	ENSMUST00000061923.5	634	2	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCGGCCCCTCCTCTATCCA	2848	False	NA	NA	False	NA	NA	NA	84771629	84769557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84769961_84771398
transcript_5579.known	chr10	-	3566	1	FSM	ENSMUSG00000074748.4	ENSMUST00000099276.4	3566	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTTGACTCATCTTCTTA	NA	False	NA	NA	False	AATAAA	-44	NA	112764900	112761334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_112761300_112764900
transcript_55791.known	chr8	-	2199	13	FSM	ENSMUSG00000037103.9	ENSMUST00000210279.2	2199	13	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_7	21.0218140669797	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTGGTGTCCTGTTCTGT	9262	False	NA	-3	True	ACTAAA	-17	NA	84831392	84823700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84824138_84824365_84824482_84824564_84824670_84824827_84824914_84824990_84825120_84825207_84825300_84825386_84825822_84828304_84828476_84828560_84828701_84828792_84828900_84829374_84829511_84829584_84829683_84831245
transcript_55796.known	chr8	-	3471	29	FSM	ENSMUSG00000036686.17	ENSMUST00000040383.9	3471	29	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_17	12.7601500215095	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTTTGTCTTTTTGTCCTTG	NA	False	NA	-1	True	AATGAA	-24	NA	84874565	84859456	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84859887_84859960_84860009_84860092_84860170_84860392_84860520_84860605_84860670_84861104_84861167_84861250_84861389_84861525_84861617_84861690_84861791_84862233_84862286_84862386_84862446_84862515_84862590_84863367_84863485_84863558_84863618_84863698_84863822_84865089_84865263_84865346_84865459_84865918_84866053_84866869_84866943_84867012_84867144_84867234_84867307_84867391_84867465_84867709_84867829_84869915_84870139_84870236_84870372_84870586_84870653_84870737_84870851_84872942_84873079_84874275
transcript_55799.known	chr8	+	2366	9	FSM	ENSMUSG00000008129.15	ENSMUST00000118856.8	2366	9	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_1	4.49826355386165	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCTGATCTGTAGCTGTG	2017	False	NA	5	True	AATAAA	-15	NA	84874787	84899219	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_84875028_84875466_84875515_84886073_84886237_84887841_84887921_84888928_84889034_84893209_84894320_84896983_84897082_84898446_84898540_84898789
transcript_55800.known	chr8	+	2167	8	FSM	ENSMUSG00000008129.15	ENSMUST00000093375.5	2167	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	5.92125193601792	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCCTCTGATCTGTAGCTGT	2110	False	NA	4	True	AATAAA	-14	NA	84874880	84899218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_84875028_84875466_84875515_84886073_84886237_84887841_84887921_84893209_84894320_84896983_84897082_84898446_84898540_84898789
transcript_55805.known	chr8	-	730	2	FSM	ENSMUSG00000056155.7	ENSMUST00000070102.6	730	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGTCTTGGGACAAGGTG	NA	False	NA	-5	True	AATAAA	-15	NA	84903181	84900361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84900602_84902691
transcript_55806.known	chr8	-	692	2	FSM	ENSMUSG00000056155.7	ENSMUST00000210202.2	692	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATCCAATAAATGCTAAGG	NA	False	NA	-31	True	NA	NA	NA	84903181	84900387	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84900602_84902703
transcript_55810.nnic	chr8	-	627	4	NNC	ENSMUSG00000019362.9	novel	616	3	NA	NA	-28	3	at_least_one_novel_splicesite	TRUE	canonical	3	981	junction_1	392.595069873386	400	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTGCTGTTTGGTGCT	9806	False	NA	-4	True	AATAAA	-15	NA	84976376	84972863	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_84972948_84972967_84973323_84976102_84976159_84976244
transcript_55813.known	chr8	-	616	3	FSM	ENSMUSG00000019362.9	ENSMUST00000019506.9	616	3	0	0	0	0	multi-exon	FALSE	canonical	3	1764	junction_2	46	364	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGGCTGTGTGCTGTTTGGT	9834	False	NA	-7	True	AATAAA	-12	NA	84976348	84972866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84973323_84976102_84976159_84976244
transcript_55814.known	chr8	-	2819	5	FSM	ENSMUSG00000004996.10	ENSMUST00000126435.8	2819	5	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_2	18.1159460144923	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGTTTTACAATACACAAA	6966	False	NA	NA	False	NA	NA	NA	84983953	84976534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84978341_84980491_84980717_84980804_84980982_84982872_84983049_84983518
transcript_55815.known	chr8	-	2119	10	FSM	ENSMUSG00000004994.13	ENSMUST00000098578.10	2119	10	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_9	31.8437543540021	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAATGCTGGAATTAAAATCT	NA	False	NA	NA	False	NA	NA	NA	84997009	84984423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84985556_84985741_84985881_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
transcript_55817.known	chr8	-	1441	9	FSM	ENSMUSG00000004994.13	ENSMUST00000005120.12	1441	9	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	76.6823806359714	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGCCTTGTTTCTAAACT	NA	False	NA	-22	True	ATTAAA	-15	NA	84996976	84984929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_84985556_84986922_84987096_84987171_84987315_84988368_84988430_84989621_84989678_84990490_84990574_84990937_84990992_84993464_84993704_84996970
transcript_5582.known	chr10	-	3752	17	FSM	ENSMUSG00000020130.10	ENSMUST00000020339.10	3752	17	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_16	42.5718143259129	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACGCATTTCTTTGGAGCGC	NA	False	NA	NA	False	ACTAAA	-3	NA	115087372	115033776	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_115035670_115038408_115038496_115039022_115039140_115044801_115044900_115045461_115045562_115046100_115046202_115048595_115048713_115053466_115053562_115054455_115054560_115055056_115055186_115056115_115056314_115057487_115057591_115065029_115065241_115069024_115069164_115075176_115075252_115076753_115076853_115087286
transcript_55821.known	chr8	+	1153	5	FSM	ENSMUSG00000034656.19	ENSMUST00000141981.8	1153	5	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	8.95474734428616	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAGGCCAACATAATCTACAC	NA	False	NA	NA	False	NA	NA	NA	85328072	85339671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85328135_85328384_85328451_85328552_85328669_85338226_85338378_85338913
transcript_55823.known	chr8	-	1524	1	FSM	ENSMUSG00000053560.6	ENSMUST00000060427.6	1524	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1296	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGGCTTGTCTGGCTTGCTT	NA	False	NA	-1	True	AATAAA	-20	NA	85389483	85387959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85388000_85389500
transcript_55824.nic	chr8	+	2363	17	NIC	ENSMUSG00000001909.17	novel	2114	15	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	37	junction_1	133.003230693844	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85412923	85426415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_85413329_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_55826.known	chr8	+	2044	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109768.9	2044	17	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	132.785409001705	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415892	85426415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85415979_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_55830.known	chr8	+	2567	17	FSM	ENSMUSG00000001909.17	ENSMUST00000001974.11	2567	17	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_1	103.16006979447	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCATCTGCATGGGGGAC	NA	False	NA	36	True	AATAAA	-36	NA	85415494	85426437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85416006_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_55835.known	chr8	+	2138	17	FSM	ENSMUSG00000001909.17	ENSMUST00000109767.9	2138	17	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	116.091541869983	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTGTCATTTTGAATTGG	NA	False	NA	15	True	AATAAA	-15	NA	85415875	85426416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85415979_85416260_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_55841.nic	chr8	+	2068	17	NIC	ENSMUSG00000001909.17	novel	2044	17	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	129	junction_1	113.375964714749	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	NA	False	NA	14	True	AATAAA	-14	NA	85415895	85426415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_85416006_85416336_85416538_85417145_85417202_85417439_85417577_85417880_85418069_85421850_85421967_85422056_85422170_85423455_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_55867.known	chr8	+	3647	15	FSM	ENSMUSG00000001909.17	ENSMUST00000137953.8	3647	15	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	120.800814296485	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGCCATCTGCATGGGGGAC	NA	False	NA	36	True	AATAAA	-36	NA	85415911	85426437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85415979_85416260_85416538_85417145_85417577_85417880_85418069_85421850_85421967_85422056_85423605_85423743_85423831_85423897_85423968_85424053_85424189_85424274_85424361_85424813_85424923_85425021_85425099_85425767_85425888_85425969_85426100_85426231
transcript_55868.known	chr8	+	638	3	FSM	ENSMUSG00000001909.17	ENSMUST00000136423.3	638	3	0	0	0	0	multi-exon	FALSE	canonical	3	591	junction_2	4	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTGTCATTTTGAATTG	3448	False	NA	14	True	AATAAA	-14	NA	85425026	85426415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85425099_85425767_85425888_85425969
transcript_55869.known	chr8	+	721	2	FSM	ENSMUSG00000074203.5	ENSMUST00000098571.5	721	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGTGGTGGCTCACATCT	NA	False	NA	NA	False	ATTAAA	-15	NA	85449635	85453473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85449901_85453017
transcript_55879.known	chr8	-	2074	9	FSM	ENSMUSG00000003813.16	ENSMUST00000003911.13	2074	9	0	0	0	0	multi-exon	TRUE	canonical	3	805	junction_3	189.238440862315	242	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCCATCTGCTCCTTCA	NA	False	NA	NA	False	NA	NA	NA	85567270	85561280	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85562304_85562383_85562549_85564088_85564220_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
transcript_55882.known	chr8	-	1842	9	FSM	ENSMUSG00000003813.16	ENSMUST00000109761.9	1842	9	0	0	0	0	multi-exon	FALSE	canonical	3	614	junction_3	246.139156525328	190	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGAGCTTCTCACAGCTGT	NA	False	NA	-14	True	AATAAA	-37	NA	85567294	85561539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85562304_85562383_85562549_85564088_85564223_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
transcript_55885.known	chr8	-	1068	9	FSM	ENSMUSG00000003813.16	ENSMUST00000128035.2	1068	9	0	0	0	0	multi-exon	FALSE	canonical	2	32	junction_1	454.887279993627	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAATGAGAATTTGGCT	NA	False	NA	NA	False	NA	NA	NA	85567294	85562248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85562304_85562448_85562549_85564088_85564223_85564317_85564397_85564635_85564764_85564901_85564958_85565097_85565280_85565422_85565585_85567122
transcript_55897.known	chr8	+	2494	2	FSM	ENSMUSG00000033751.6	ENSMUST00000036734.6	2494	2	0	0	0	0	multi-exon	FALSE	canonical	3	736	junction_1	0	157	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATATATATACTTTCTC	2674	False	NA	NA	False	NA	NA	NA	85558150	85562111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85559270_85560736
transcript_55899.known	chr8	-	1369	2	FSM	ENSMUSG00000053226.8	ENSMUST00000238279.2	1369	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTGTGCGTGCTTCTTTCT	399	False	NA	0	True	CATAAA	-15	NA	85559038	85542033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85543163_85558798
transcript_559.nnic	chr1	-	2425	16	NNC	ENSMUSG00000046337.18	novel	2286	15	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_5	46.2106288879758	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTTCTGGAGTTCCTTC	NA	False	NA	-1	True	ATTAAA	-18	NA	36722284	36601776	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_36602102_36603410_36603564_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36695891_36696015_36698444_36698507_36699815_36700131_36721948
transcript_55907.known	chr8	-	2184	9	FSM	ENSMUSG00000003814.9	ENSMUST00000003912.7	2184	9	0	0	0	0	multi-exon	FALSE	canonical	3	1093	junction_6	113.438791314964	1340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATATTAGCCATCTTGGTT	NA	False	NA	NA	False	NA	NA	NA	85573563	85568478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85569474_85569572_85569666_85570693_85570838_85571006_85571121_85571202_85571413_85571499_85571595_85572490_85572695_85572878_85572981_85573336
transcript_55916.known	chr8	+	1708	13	FSM	ENSMUSG00000003808.19	ENSMUST00000156970.8	1708	13	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_2	180.621996322584	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTTGTCATTCATTTC	NA	False	NA	37	True	AATAAA	-37	NA	85583648	85595885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85583811_85587534_85587587_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594378_85594548_85594637_85594716_85594852_85594968_85595494
transcript_55917.known	chr8	+	1920	12	FSM	ENSMUSG00000003808.19	ENSMUST00000129595.8	1920	12	0	0	0	0	multi-exon	FALSE	canonical	3	583	junction_4	51.0548238790647	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCTGTTGTCATTCATTTC	NA	False	NA	37	True	AATAAA	-37	NA	85583623	85595885	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594548_85594637_85594716_85594852_85594968_85595494
transcript_55918.known	chr8	+	1795	13	FSM	ENSMUSG00000003808.19	ENSMUST00000109754.2	1795	13	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_9	182.281585435526	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTTGTCATTCATTTCA	NA	False	NA	38	True	AATAAA	-38	NA	85583645	85595886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85583811_85587534_85587673_85587755_85587855_85587940_85588060_85590686_85590780_85590859_85590989_85591065_85591182_85594005_85594091_85594177_85594278_85594381_85594548_85594637_85594716_85594852_85594968_85595494
transcript_55921.known	chr8	-	2114	12	FSM	ENSMUSG00000003809.15	ENSMUST00000109745.8	2114	12	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_11	27.3803935401452	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATACTTTGGCTTCTCAA	NA	False	NA	-5	True	AATAAA	-9	NA	85620550	85613021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183_85620314_85620370
transcript_55923.known	chr8	-	2167	11	FSM	ENSMUSG00000003809.15	ENSMUST00000003907.14	2167	11	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_6	21.1293634546808	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATACTTTGGCTTCTCAA	NA	False	NA	-5	True	AATAAA	-9	NA	85620546	85613021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85613683_85615155_85615317_85615890_85616017_85616210_85616315_85617339_85617557_85617641_85617772_85619030_85619202_85619459_85619523_85619649_85619794_85620076_85620104_85620183
transcript_55932.known	chr8	+	1686	5	FSM	ENSMUSG00000003824.13	ENSMUST00000136026.8	1686	5	0	0	0	0	multi-exon	FALSE	canonical	3	1047	junction_2	374.154045815357	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAATGTGTGCTGTTCTCTTC	NA	False	NA	NA	False	CATAAA	-14	NA	85598739	85614850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85598883_85599348_85599462_85610059_85610214_85612563_85612753_85613763
transcript_55934.known	chr8	+	929	5	FSM	ENSMUSG00000003824.13	ENSMUST00000170296.2	929	5	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	678.634428466461	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAACATGGCTGGTCCTTT	NA	False	NA	81	True	NA	NA	NA	85598739	85614075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85598883_85599330_85599462_85610059_85610214_85612563_85612753_85613763
transcript_55935.known	chr8	+	685	4	FSM	ENSMUSG00000003824.13	ENSMUST00000003922.6	685	4	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_2	470.355184940062	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGTCCTTTGCTCTTTCCC	NA	False	NA	91	True	AAAACA	-4	NA	85598821	85614085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85598883_85599348_85599462_85612563_85612753_85613763
transcript_55937.known	chr8	-	4872	26	FSM	ENSMUSG00000053693.17	ENSMUST00000109741.9	4872	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	4.15191522071441	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTGGGGTTCACACCTCC	NA	False	NA	1	True	AATAAA	-20	NA	85663982	85638531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85639871_85639948_85640137_85642083_85642221_85642308_85642432_85642784_85643015_85643181_85643389_85644355_85644604_85644681_85644861_85645298_85645409_85646988_85647112_85647243_85647346_85647425_85647592_85647728_85647862_85647968_85648108_85650359_85650569_85650656_85650743_85651903_85651972_85652037_85652171_85652273_85652376_85655208_85655419_85655578_85655655_85655850_85656012_85657448_85657528_85661872_85661949_85662334_85662424_85663823
transcript_55943.nnic	chr8	+	1494	7	NNC	ENSMUSG00000003812.14	novel	1715	6	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	34.0864912962436	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGACTTGAATTTGTTT	NA	False	NA	18	True	NA	NA	NA	85635265	85638098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314_85637821_85637964
transcript_55947.known	chr8	+	1958	6	FSM	ENSMUSG00000003812.14	ENSMUST00000109744.8	1958	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	35.6796860972739	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACTGGTAACCTTTTTCTTAA	NA	False	NA	9	True	AATACA	-19	NA	85635188	85638337	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85635504_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314
transcript_55958.known	chr8	+	1118	3	FSM	ENSMUSG00000003812.14	ENSMUST00000148573.2	1118	3	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	1.5	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATATAGAGTGGGGGTG	NA	False	NA	4	True	AATAAA	-16	NA	85640019	85649544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85640158_85647022_85647134_85648675
transcript_55959.nnic	chr8	+	1202	3	NNC	ENSMUSG00000003812.14	novel	1118	3	NA	NA	-61	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	44.5	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACATATAGAGTGGGGGTG	NA	False	NA	4	True	AATAAA	-16	NA	85639958	85649544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_85640158_85646999_85647134_85648675
transcript_5596.known	chr10	-	2799	7	FSM	ENSMUSG00000069520.7	ENSMUST00000217884.2	2799	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	78.0590944235342	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198406	115176646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197753_115198291
transcript_55962.known	chr8	+	4073	7	FSM	ENSMUSG00000003812.14	ENSMUST00000128400.2	4073	7	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_4	11.7567947256989	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTCTCTTTCATCTAG	NA	False	NA	NA	False	NA	NA	NA	85635349	85641150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85635500_85635613_85635792_85635885_85635965_85636154_85636320_85636400_85636599_85637314_85640158_85640690
transcript_55967.known	chr8	-	2981	10	FSM	ENSMUSG00000052926.17	ENSMUST00000109736.9	2981	10	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_9	446.653979919331	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACTATGTTATCTATTT	4554	False	NA	-7	True	NA	NA	NA	85696369	85683238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85684494_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488_85692917_85694291_85694498_85695914
transcript_5597.known	chr10	-	3012	7	FSM	ENSMUSG00000069520.7	ENSMUST00000092170.7	3012	7	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_6	17.9017379665278	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198172	115176646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197956
transcript_55973.known	chr8	+	1612	6	FSM	ENSMUSG00000005161.16	ENSMUST00000109734.8	1612	6	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_1	1434.62463383284	289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTCTAGGCTCTGACCC	NA	False	NA	NA	False	AATAAA	-37	NA	85696215	85701463	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85696392_85696780_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
transcript_55974.known	chr8	+	1590	6	FSM	ENSMUSG00000005161.16	ENSMUST00000109733.8	1590	6	0	0	0	0	multi-exon	FALSE	canonical	3	752	junction_1	1259.55458793972	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTCTAGGCTCTGACCC	NA	False	NA	NA	False	AATAAA	-37	NA	85696395	85701463	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85696638_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
transcript_55975.known	chr8	-	1809	1	FSM	ENSMUSG00000052837.8	ENSMUST00000064922.7	1809	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	89	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTGTGGTCTCTTTTTTC	NA	False	NA	-1	True	AGTAAA	-21	NA	85705347	85703538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85703500_85705300
transcript_55976.known	chr8	-	1006	8	FSM	ENSMUSG00000052926.17	ENSMUST00000065049.15	1006	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	398.770508397182	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	8253	False	NA	-8	True	AATAAA	-14	NA	85692670	85684295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85684483_85684594_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
transcript_55977.known	chr8	-	1141	7	FSM	ENSMUSG00000052926.17	ENSMUST00000128972.9	1141	7	0	0	0	0	multi-exon	FALSE	canonical	3	1021	junction_4	88.9793983646402	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGACCGAGTGCTTTGTGG	8230	False	NA	-8	True	AATAAA	-14	NA	85692693	85684295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85684719_85686404_85686493_85686595_85686734_85691759_85691848_85691945_85692073_85692199_85692272_85692488
transcript_55978.known	chr8	+	1500	6	FSM	ENSMUSG00000005161.16	ENSMUST00000005292.15	1500	6	0	0	0	0	multi-exon	FALSE	canonical	3	3496	junction_3	236.69169820676	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACCTCTAGGCTCTGACCC	NA	False	NA	NA	False	AATAAA	-37	NA	85696239	85701463	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85696392_85696868_85696974_85697064_85697219_85697915_85698039_85698190_85698322_85700628
transcript_55981.known	chr8	+	2580	22	FSM	ENSMUSG00000052566.9	ENSMUST00000064495.8	2580	22	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_11	39.7071479254288	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCGTTTTTGCCTATCTG	NA	False	NA	18	True	AATAAA	-14	NA	85717245	85729978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85717382_85717847_85717934_85718005_85718079_85719812_85719864_85719952_85720086_85720203_85720272_85720616_85720680_85721089_85721171_85721250_85721412_85721504_85721646_85722364_85722567_85723583_85723695_85723792_85723881_85724007_85724078_85724628_85724767_85724832_85724921_85725118_85725154_85727783_85727867_85727949_85728054_85729132_85729244_85729315_85729388_85729493
transcript_55990.known	chr8	+	3080	16	FSM	ENSMUSG00000052566.9	ENSMUST00000210326.2	3080	16	0	0	0	0	multi-exon	FALSE	canonical	3	335	junction_11	30.1194658356058	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAGAAAAAAAAAAAAAATAT	NA	False	NA	NA	False	NA	NA	NA	85717270	85726335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85717382_85717847_85717934_85718005_85718079_85719812_85719864_85719952_85720086_85720203_85720272_85720616_85720680_85721089_85721171_85721250_85721412_85721504_85721646_85722364_85722567_85723583_85723695_85723792_85723881_85724007_85724078_85724628_85724767_85724832
transcript_55998.known	chr8	-	1256	7	FSM	ENSMUSG00000052456.10	ENSMUST00000064314.10	1256	7	0	0	0	0	multi-exon	FALSE	canonical	1	664	junction_3	477.58303524681	943	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTTGTCAGTGGATG	8400	False	NA	-4	True	AATAAA	-14	NA	85751910	85744559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85744885_85745150_85745349_85745439_85745548_85746150_85746302_85746388_85746538_85750806_85750955_85751733
transcript_56.known	ERCC-00163	+	527	1	FSM	ERCC-00163A	DQ668359	527	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00163_+_0_500
transcript_560.known	chr1	-	2286	15	FSM	ENSMUSG00000046337.18	ENSMUST00000170295.8	2286	15	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_5	44.2795502622663	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGGAGTTCCTTCCATC	NA	False	NA	3	True	ATTAAA	-22	NA	36722264	36601772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_36602102_36603410_36603564_36603911_36603990_36617599_36617726_36624996_36625085_36639203_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
transcript_5600.known	chr10	-	2949	7	FSM	ENSMUSG00000069520.7	ENSMUST00000219890.2	2949	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	79.1568414955748	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198129	115176646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197753_115197864
transcript_56007.known	chr8	+	902	3	FSM	ENSMUSG00000041203.10	ENSMUST00000047281.10	902	3	0	0	0	0	multi-exon	FALSE	canonical	3	920	junction_1	163	362	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGCTTGGTTTATCTT	NA	False	NA	21	True	AGTAAA	-21	NA	85753451	85756915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85753864_85756167_85756246_85756503
transcript_56008.nnic	chr8	+	969	3	NNC	ENSMUSG00000041203.10	novel	902	3	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	617	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGTGCTTGGTTTATCTT	NA	False	NA	21	True	AGTAAA	-21	NA	85753500	85756915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_85753864_85756051_85756246_85756503
transcript_56009.known	chr8	+	1907	10	FSM	ENSMUSG00000008167.15	ENSMUST00000095220.4	1907	10	0	0	0	0	multi-exon	TRUE	canonical	3	54	junction_4	11.5864970366477	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTGTGAGCTTTCTGT	NA	False	NA	22	True	AATAAA	-22	NA	85786683	85793750	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012_85791126_85791209_85791302_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
transcript_56010.known	chr8	+	1969	10	FSM	ENSMUSG00000008167.15	ENSMUST00000142036.8	1969	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	27.0760246548697	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGCGTTTTGTTTTGTTT	NA	False	NA	NA	False	NA	NA	NA	85787195	85793510	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85787980_85788574_85788715_85788800_85788930_85791012_85791126_85791209_85791302_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
transcript_56013.known	chr8	+	1993	9	FSM	ENSMUSG00000008167.15	ENSMUST00000139721.8	1993	9	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	8.18535277187245	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTGAGCTTTCTGTGAC	NA	False	NA	25	True	AATAAA	-25	NA	85786684	85793753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85787166_85788574_85788715_85788800_85788930_85791012_85791302_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
transcript_56014.known	chr8	+	2327	9	FSM	ENSMUSG00000008167.15	ENSMUST00000152884.8	2327	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	28.0019530568852	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAACTGGAGTGTGAGCTTT	NA	False	NA	18	True	AATAAA	-18	NA	85787157	85793746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85787980_85788574_85788715_85788800_85788930_85791012_85791302_85792449_85792599_85792684_85792799_85792901_85792992_85793073_85793140_85793218
transcript_56019.known	chr8	+	1333	9	FSM	ENSMUSG00000060038.15	ENSMUST00000078665.13	1333	9	0	0	0	0	multi-exon	FALSE	canonical	3	191	junction_2	36.5391485259304	308	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTGCATCCTTGGTGTCAG	NA	False	NA	23	True	AATAAA	-29	NA	85798385	85801791	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85798683_85799080_85799246_85799923_85800046_85800131_85800229_85800309_85800397_85800840_85800947_85801021_85801126_85801362_85801489_85801562
transcript_56025.known	chr8	-	1238	9	FSM	ENSMUSG00000005150.17	ENSMUST00000093357.12	1238	9	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_6	13.3410784796432	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTAGTCTTCATTCTT	NA	False	NA	-2	True	AATAAA	-35	NA	85807375	85801663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85801973_85802451_85802567_85802652_85802762_85802845_85802914_85806209_85806337_85806417_85806467_85806748_85806855_85806941_85807063_85807141
transcript_5603.nic	chr10	-	1328	7	NIC	ENSMUSG00000069520.7	novel	3012	7	NA	NA	-1	1339	combination_of_known_junctions	FALSE	canonical	3	28	junction_6	68.9365650435239	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCAGCTCCTCCCGTGTTC	NA	False	NA	NA	False	AATAAA	-18	NA	115198163	115178308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115197969
transcript_56031.known	chr8	-	1406	8	FSM	ENSMUSG00000005150.17	ENSMUST00000131909.8	1406	8	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_4	7.90763000177031	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTAGTCTTCATTCTT	NA	False	NA	-2	True	AATAAA	-35	NA	85807261	85801663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85801973_85802451_85802567_85802652_85802762_85802845_85802914_85806209_85806337_85806417_85806855_85806941_85807063_85807141
transcript_56035.known	chr8	-	1561	7	FSM	ENSMUSG00000005150.17	ENSMUST00000136696.8	1561	7	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_3	8.39477350630869	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTTAGTCTTCATTCTT	NA	False	NA	-2	True	AATAAA	-35	NA	85807332	85801663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85801973_85802451_85802567_85802652_85802914_85806209_85806337_85806417_85806855_85806941_85807063_85807141
transcript_5604.nic	chr10	-	1273	7	NIC	ENSMUSG00000069520.7	novel	2799	7	NA	NA	-24	1339	combination_of_known_junctions	FALSE	canonical	3	22	junction_6	71.1213751273132	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCAGCTCCTCCCGTGTTC	NA	False	NA	NA	False	AATAAA	-18	NA	115198430	115178308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713_115197865_115198291
transcript_56040.known	chr8	+	922	4	FSM	ENSMUSG00000059355.14	ENSMUST00000079764.14	922	4	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_1	13.7679176187089	468	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGCTTCTCTTTTGTTC	NA	False	NA	36	True	TATAAA	-25	NA	85807368	85808968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85807693_85807801_85807908_85808405_85808504_85808574
transcript_56041.known	chr8	+	630	4	FSM	ENSMUSG00000059355.14	ENSMUST00000140621.2	630	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	280.064675070281	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCACTGTTGCTTCTCT	NA	False	NA	29	True	TATAAA	-18	NA	85807616	85808961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85807693_85807801_85807908_85808405_85808504_85808611
transcript_56044.known	chr8	+	659	2	FSM	ENSMUSG00000060038.15	ENSMUST00000129826.2	659	2	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_1	0	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTAGTCTTTTTTGTTTT	NA	False	NA	NA	False	NA	NA	NA	85798434	85799491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85798683_85799080
transcript_56045.known	chr8	+	798	3	FSM	ENSMUSG00000059355.14	ENSMUST00000148592.2	798	3	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_2	13.5	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTGCTTCTCTTTTGTTC	NA	False	NA	36	True	TATAAA	-25	NA	85807601	85808968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85807908_85808405_85808504_85808574
transcript_56048.known	chr8	+	3822	24	FSM	ENSMUSG00000005142.11	ENSMUST00000034121.11	3822	24	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_7	31.1019422681999	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAACACACCTAAAAGG	NA	False	NA	NA	False	NA	NA	NA	85809943	85824911	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_85810118_85811029_85811133_85811269_85811444_85811983_85812178_85813439_85813573_85813800_85813947_85815182_85815300_85817546_85817630_85817712_85817834_85817901_85817981_85818139_85818250_85818466_85818575_85818693_85818811_85819460_85819650_85820547_85820646_85820734_85820853_85821748_85821868_85821954_85822057_85822167_85822256_85822359_85822441_85822899_85823128_85823334_85823491_85823580_85823684_85824030
transcript_56055.nic	chr8	+	1247	4	ISM	ENSMUSG00000005142.11	ENSMUST00000034121.11	3822	24	-45	12177	0	16	5prime_fragment	FALSE	canonical	3	217	junction_2	6.48074069840786	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTAGGGCTGGAGCTCAGC	NA	False	NA	NA	False	NA	NA	NA	85809898	85812734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_85810118_85811029_85811133_85811269_85811444_85811983
transcript_56063.known	chr8	-	3474	17	FSM	ENSMUSG00000031696.10	ENSMUST00000034131.10	3474	17	0	0	0	0	multi-exon	FALSE	canonical	3	1260	junction_3	108.704875695619	302	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATTATCTTTGTTTT	NA	False	NA	-8	True	AATAAA	-15	NA	86026431	85987020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_85987939_85988623_85988768_85989939_85990180_85990772_85990953_85997321_85997445_86000100_86000257_86001448_86001657_86005332_86005482_86005588_86005686_86007864_86007975_86008469_86008554_86010621_86010836_86012969_86013153_86014324_86014449_86016334_86016432_86021487_86021587_86026083
transcript_5607.known	chr10	-	3084	6	FSM	ENSMUSG00000069520.7	ENSMUST00000217887.2	3084	6	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_4	16.3291151015602	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGACTTGTTTTGTTTTTA	NA	False	NA	-4	True	TATAAA	-19	NA	115198152	115176646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_115178575_115179602_115179813_115182936_115183192_115183550_115183689_115195558_115195673_115197713
transcript_56071.known	chr8	+	1287	7	FSM	ENSMUSG00000031697.13	ENSMUST00000034132.13	1287	7	0	0	0	0	multi-exon	FALSE	canonical	3	862	junction_2	81.7626986399598	557	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTAAATGTGTATGAGTAT	NA	False	NA	9	True	AATAAA	-17	NA	86026419	86034700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_86026622_86027737_86027868_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
transcript_56075.known	chr8	+	1466	6	FSM	ENSMUSG00000031697.13	ENSMUST00000170141.3	1466	6	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	361.716463545689	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGAGTTGTGATTGTCAG	NA	False	NA	NA	False	AATAAA	-17	NA	86026317	86034907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_86026622_86029424_86029589_86029990_86030081_86031837_86031951_86032845_86032948_86034214
transcript_56077.nnic	chr8	+	1329	6	NIC	ENSMUSG00000031697.13	novel	1287	7	NA	NA	-48	0	combination_of_known_splicesites	FALSE	canonical	3	109	junction_2	378.03089820807	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTAAATGTGTATGAGTA	NA	False	NA	8	True	AATAAA	-16	NA	86026212	86034699	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_86026622_86027737_86027868_86029990_86030081_86031837_86031951_86032845_86032948_86034214
transcript_5608.known	chr10	-	4970	3	FSM	ENSMUSG00000020137.6	ENSMUST00000218842.2	4970	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	6.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGAATTTTTGTCATCCCT	2368	False	NA	NA	False	ATTAAA	-13	NA	115220340	115204308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_115208852_115212256_115212453_115220109
transcript_56082.known	chr8	-	1587	4	FSM	ENSMUSG00000036934.10	ENSMUST00000047749.7	1587	4	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_1	19.3045763140937	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTGGCATACCAGTGTGG	NA	False	NA	94	True	ATTAAA	-21	NA	86159462	86135387	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_86136520_86138741_86138925_86153488_86153586_86159287
transcript_56083.known	chr8	-	419	3	FSM	ENSMUSG00000036934.10	ENSMUST00000209355.2	419	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	124.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGCAGAAATAAATAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	86159450	86136446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_86136520_86138741_86138925_86159287
transcript_56086.known	chr8	+	3639	12	FSM	ENSMUSG00000031700.12	ENSMUST00000034136.12	3639	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	271.645643020279	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAGCAGCTTGGTCAATAA	NA	False	NA	13	True	AATAAA	-19	NA	86219204	86254189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_86219319_86219533_86219799_86229893_86229984_86232207_86232317_86235807_86235939_86238741_86238986_86242786_86242867_86244605_86244743_86246076_86246252_86247967_86248124_86249884_86249998_86252164
transcript_56090.known	chr8	-	2919	9	FSM	ENSMUSG00000031701.7	ENSMUST00000034138.7	2919	9	0	0	0	0	multi-exon	FALSE	canonical	3	694	junction_1	52.4486355875918	778	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCAGCATTCTTCAGT	NA	False	NA	NA	False	AATAAA	-15	NA	86281973	86264261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_86266037_86266678_86266807_86266936_86267082_86273141_86273339_86275192_86275327_86275510_86275592_86279815_86280040_86280545_86280606_86281798
transcript_56092.known	chr8	-	3306	18	FSM	ENSMUSG00000031703.9	ENSMUST00000034140.9	3306	18	0	0	0	0	multi-exon	FALSE	canonical	1	110	junction_3	53.6212528231601	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAAACGCTGTGGCAAG	NA	False	NA	-21	True	AATAAA	-13	NA	86567550	86444206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_86445557_86449259_86449378_86452142_86452226_86452794_86452920_86459001_86459081_86462753_86462798_86464745_86464855_86466856_86467008_86490863_86491037_86493586_86493682_86502768_86502851_86507144_86507207_86537173_86537269_86557811_86557887_86561649_86561708_86562974_86563121_86565556_86565630_86567162
transcript_56096.known	chr8	+	5351	32	FSM	ENSMUSG00000036879.16	ENSMUST00000053771.14	5351	32	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	17.4946996581545	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGCCTCACGGAAGCTGAACA	NA	False	NA	NA	False	NA	NA	NA	86567630	86788005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_86567733_86569632_86569742_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755_86648872_86662036_86662101_86667469_86667566_86668820_86669019_86672680_86672739_86673763_86673842_86684124_86684284_86697531_86697627_86737645_86737702_86738198_86738293_86743487_86743572_86744020_86744126_86745097_86745181_86745664_86745756_86748013_86748076_86748171_86748335_86749366_86749449_86750909_86750968_86753085_86753177_86756110_86756314_86770338_86770474_86776318_86776449_86783076_86783185_86785173_86785315_86785933
transcript_56098.known	chr8	+	1013	8	FSM	ENSMUSG00000036879.16	ENSMUST00000159882.8	1013	8	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	24.1356709507919	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGTCTGAAAGGAGCAAGG	NA	False	NA	NA	False	AATAAA	-14	NA	86567636	86649045	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_86567733_86569632_86569742_86602262_86602353_86604738_86604878_86606339_86606440_86623058_86623167_86628505_86628587_86648755
transcript_56099.known	chr8	+	2859	15	FSM	ENSMUSG00000047866.21	ENSMUST00000034141.18	2859	15	0	0	0	0	multi-exon	TRUE	canonical	3	174	junction_5	34.038693468775	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAATTCTGGTCTCCAGTG	NA	False	NA	NA	False	AATAAA	-12	NA	87350671	87443259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_87351045_87358013_87358249_87360496_87360629_87361424_87361548_87363106_87363271_87364530_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
transcript_5610.known	chr10	-	3681	2	FSM	ENSMUSG00000020137.6	ENSMUST00000020346.6	3681	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAACAAAAACACAGCTG	2393	False	NA	NA	False	NA	NA	NA	115220315	115205376	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_115208852_115220109
transcript_56101.known	chr8	+	2371	13	FSM	ENSMUSG00000047866.21	ENSMUST00000122188.10	2371	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	73.1522385166715	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGAATTCTGGTCTCCAGTG	NA	False	NA	NA	False	AATAAA	-12	NA	87350733	87443259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_87351045_87358013_87358249_87360496_87360560_87364600_87364626_87368169_87368429_87378803_87378946_87392318_87392470_87394340_87394468_87399563_87399698_87435560_87435704_87439939_87440148_87440530_87440722_87442877
transcript_56104.known	chr8	-	1968	2	FSM	ENSMUSG00000036840.6	ENSMUST00000045296.6	1968	2	0	0	0	0	multi-exon	FALSE	canonical	3	375	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGGCAGTTTGCAAAAAA	-5	True	NA	NA	False	ATTAAA	-21	NA	87472562	87450634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_87452485_87472444
transcript_56106.known	chr8	+	538	1	FSM	ENSMUSG00000066362.6	ENSMUST00000183478.2	538	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	16869	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATCTCAGACACTAAAG	NA	False	NA	37	True	AATAAA	-26	NA	87774316	87774854	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_87774300_87774900
transcript_56111.nic	chr8	+	556	5	NIC	ENSMUSG00000097248.10	novel	447	4	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	1	4	junction_1	86.1434124004848	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	206	False	NA	7	True	AATAAA	-15	NA	88199740	88252182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_88199859_88240436_88240525_88248363_88248442_88250923_88251056_88252042
transcript_56113.known	chr8	+	682	4	FSM	ENSMUSG00000097248.10	ENSMUST00000181159.8	682	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	80.2509951478623	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	198	False	NA	7	True	AATAAA	-15	NA	88199439	88252182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_88199589_88248363_88248442_88250923_88251056_88251859
transcript_56114.known	chr8	+	498	4	FSM	ENSMUSG00000097248.10	ENSMUST00000182174.8	498	4	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	31.0590834807897	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGAGTGTGTCCATTCCTCC	198	False	NA	6	True	AATAAA	-14	NA	88199439	88252181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_88199589_88248363_88248442_88250923_88251056_88252042
transcript_56116.known	chr8	+	447	4	FSM	ENSMUSG00000097248.10	ENSMUST00000182758.2	447	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	69.6866000191014	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTGTGTCCATTCCTCCT	227	False	NA	7	True	AATAAA	-15	NA	88199761	88252182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_88199859_88248363_88248442_88250923_88251056_88252042
transcript_56117.known	chr8	+	1452	3	FSM	ENSMUSG00000097248.10	ENSMUST00000180806.9	1452	3	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_1	38	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCGAGTGTGTCCATTCCTC	14	False	NA	5	True	AATAAA	-13	NA	88199471	88252180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_88199589_88248363_88248442_88250923
transcript_56118.nic	chr8	+	1422	6	NIC	ENSMUSG00000036810.17	novel	728	6	NA	NA	-58	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_5	70.6070817977914	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTTGTGTGGTTTATT	NA	False	NA	17	True	NA	NA	NA	88845338	88858315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88856433_88856974_88857030_88857363
transcript_56120.known	chr8	+	1731	6	FSM	ENSMUSG00000036810.17	ENSMUST00000095214.10	1731	6	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_2	26.3256528883901	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAACTAGTGGTTAGAGATT	NA	False	NA	9	True	AATAAA	-11	NA	88845396	88861734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_88845498_88846407_88846480_88851709_88851784_88856322_88856433_88856974_88857030_88860415
transcript_56122.known	chr8	+	1643	5	FSM	ENSMUSG00000036810.17	ENSMUST00000127490.8	1643	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	72.261244799685	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAGTGGTTAGAGATTTTCT	NA	False	NA	13	True	AATAAA	-15	NA	88845414	88861738	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_88845498_88846407_88846480_88856322_88856433_88856974_88857030_88860415
transcript_56124.known	chr8	+	3251	15	FSM	ENSMUSG00000031657.17	ENSMUST00000034079.14	3251	15	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_7	19.6926641267291	35	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTGTGTCATACAGATT	NA	False	NA	NA	False	AATAAA	-16	NA	88864482	88898655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_88864786_88864902_88865076_88866519_88866608_88868299_88868410_88871156_88871267_88874174_88874316_88876719_88876998_88883089_88883181_88883297_88883456_88883680_88883764_88884756_88884894_88888505_88888595_88891515_88891660_88893623_88893801_88897486
transcript_56126.known	chr8	-	3625	17	FSM	ENSMUSG00000031660.14	ENSMUST00000034085.8	3625	17	0	0	0	0	multi-exon	TRUE	canonical	3	463	junction_12	36.2439650148821	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	89088822	89057686	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_89059172_89059508_89059653_89060365_89060510_89060732_89060845_89063708_89063766_89066036_89066149_89069362_89069499_89070209_89070318_89071776_89071853_89072457_89072582_89073501_89073687_89078427_89078539_89081256_89081402_89084164_89084223_89084527_89084658_89088129_89088339_89088533
transcript_56128.nic	chr8	-	249	2	ISM	ENSMUSG00000031660.14	ENSMUST00000135471.2	511	4	5	4034	5	-4034	5prime_fragment	FALSE	canonical	3	543	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAGGAAGAAAGGCGAGAAGC	NA	False	NA	6	True	NA	NA	NA	89088637	89088193	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_89088339_89088533
transcript_56129.known	chr8	+	4638	18	FSM	ENSMUSG00000036712.16	ENSMUST00000211554.2	4638	18	0	0	0	0	multi-exon	TRUE	canonical	3	5	junction_1	16.8699483019167	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCTATAAATATTGCTGT	NA	False	NA	8	True	TATAAA	-17	NA	89423674	89475083	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_89423728_89428932_89429067_89431853_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89456086_89456467_89457283_89457450_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913_89469023_89471455_89471575_89471836_89472054_89473456
transcript_56130.known	chr8	+	4476	17	FSM	ENSMUSG00000036712.16	ENSMUST00000209559.2	4476	17	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	10.7172466146861	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTCTATAAATATTGCTGT	NA	False	NA	8	True	TATAAA	-17	NA	89423702	89475083	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_89423728_89431853_89432508_89433716_89434020_89436518_89436625_89445925_89446025_89449726_89449841_89456086_89456467_89457283_89457450_89458302_89458445_89459613_89459737_89461510_89461603_89462458_89462526_89467918_89468052_89468913_89469023_89471455_89471575_89471836_89472054_89473456
transcript_56139.nnic	chr8	+	356	3	Antisense	novelGene_ENSMUSG00000031665.8_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	16	junction_1	4	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGCTGTAATG	NA	False	NA	NA	False	NA	NA	NA	89768320	89795958	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr8_+_89768425_89784011_89784080_89795774
transcript_56143.known	chr8	-	2200	11	FSM	ENSMUSG00000031667.17	ENSMUST00000120213.9	2200	11	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_9	146.200581394193	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTATTTTTTTAACTTCCAG	NA	False	NA	-3	True	AATAAA	-17	NA	91860625	91850126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857781_91858550_91858632_91860527
transcript_56146.known	chr8	-	1171	10	FSM	ENSMUSG00000031667.17	ENSMUST00000109609.9	1171	10	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_9	96.0081015100057	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGACTGGCTATCAGTGTTG	NA	False	NA	-9	True	AGTAAA	-12	NA	91860651	91851096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_91851307_91851450_91851512_91852444_91852553_91852652_91852752_91852825_91852915_91853301_91853403_91853492_91853558_91856227_91856434_91857668_91857777_91860527
transcript_5615.nic	chr10	-	2880	17	NIC	ENSMUSG00000020166.16	novel	2955	17	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	100	junction_15	145.637593339598	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTGGCTTTGATT	NA	False	NA	-5	True	AATAAA	-19	NA	116417426	116321069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116373125_116373184_116384937_116385081_116417357
transcript_56152.known	chr8	+	932	1	FSM	ENSMUSG00000031666.16	ENSMUST00000210533.2	932	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAAAAAAAGAAACATGGC	NA	False	NA	NA	False	TTTAAA	-44	NA	91796697	91797629	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_91796700_91797600
transcript_56153.nic	chr8	-	488	3	ISM	ENSMUSG00000033282.15	ENSMUST00000139113.8	5046	26	-37	88892	3	141	5prime_fragment	FALSE	canonical	3	21	junction_2	3	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAGTTGCCATTTGAAAGA	NA	False	NA	NA	False	AATAAA	-26	NA	92039887	92034475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_92034815_92036965_92037058_92039830
transcript_56154.known	chr8	-	7009	26	FSM	ENSMUSG00000033282.15	ENSMUST00000047783.14	7009	26	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_9	4.90126514279732	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGAGACTTTGGGTTGTG	NA	False	NA	NA	False	AATAAA	-31	NA	92039890	91943657	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_91946918_91947999_91948134_91951880_91951966_91959435_91959620_91975336_91975408_91977777_91977932_91979109_91979206_91979482_91979567_91979703_91979895_91987372_91987752_91990136_91990289_91996726_91997180_92000238_92000357_92000917_92001098_92001751_92001803_92002257_92002365_92007345_92007486_92012861_92012936_92014213_92014361_92016250_92016357_92025856_92026001_92027405_92027509_92031346_92031646_92034669_92034815_92036965_92037058_92039830
transcript_56156.known	chr8	+	3564	9	FSM	ENSMUSG00000055932.16	ENSMUST00000069718.15	3564	9	0	0	0	0	multi-exon	FALSE	canonical	3	202	junction_7	44.2492937796752	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCGTCCGTGCTTTTCTCC	NA	False	NA	16	True	AATAAA	-24	NA	92040152	92395067	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_92040249_92128434_92128513_92135850_92136470_92168290_92168435_92194944_92195025_92200936_92201081_92211786_92211907_92249399_92249525_92392909
transcript_56158.known	chr8	+	3751	7	FSM	ENSMUSG00000055932.16	ENSMUST00000136802.8	3751	7	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_6	36.3994047570378	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGAAAAGAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	92040195	92214419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_92040249_92128434_92128513_92135850_92136470_92168290_92168435_92194944_92195025_92200936_92201081_92211786
transcript_56164.known	chr8	+	3078	13	FSM	ENSMUSG00000031740.9	ENSMUST00000034187.9	3078	13	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_9	5.63964143856288	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTTTGGCTCTGTTTTAGC	NA	False	NA	4	True	AATAAA	-19	NA	93553918	93580048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_93554406_93557248_93557476_93558312_93558462_93559391_93559521_93559696_93559871_93562596_93562771_93563533_93563708_93565880_93566037_93567017_93567160_93570447_93570585_93572708_93572869_93576753_93576864_93579189
transcript_56165.known	chr8	+	2811	14	FSM	ENSMUSG00000033192.6	ENSMUST00000046290.3	2811	14	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_10	2.47591952914324	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTATTGGTTCTGTTGGTAC	NA	False	NA	NA	False	AATAAA	-30	NA	93581966	93645907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_93582254_93591528_93591669_93596275_93596494_93597765_93597879_93599675_93599737_93600860_93600920_93602182_93602218_93606027_93606083_93613193_93613277_93615900_93616027_93617300_93617455_93635814_93635914_93640870_93641007_93644662
transcript_56166.known	chr8	-	1110	4	FSM	ENSMUSG00000110670.2	ENSMUST00000212930.2	1110	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.471404520791032	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGCGGGCCACTCTGCAG	0	True	NA	NA	False	NA	NA	NA	94153971	94149768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_94150064_94150168_94150242_94152733_94152830_94153325
transcript_56170.known	chr8	-	1184	7	FSM	ENSMUSG00000031754.11	ENSMUST00000212981.2	1184	7	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_6	876.397677363929	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATTTTTTTTTAAGTTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	94763634	94746075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763253
transcript_56171.known	chr8	-	5010	7	FSM	ENSMUSG00000031754.11	ENSMUST00000034204.11	5010	7	0	0	0	0	multi-exon	FALSE	canonical	3	2190	junction_4	118.898649651242	1377	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACTAATTGTTTGGGATAT	NA	False	NA	NA	False	AATAAA	-17	NA	94763659	94742123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_94746333_94749402_94749518_94751169_94751246_94755462_94755553_94757771_94757836_94758929_94759131_94763404
transcript_56176.known	chr8	+	5310	13	FSM	ENSMUSG00000033009.16	ENSMUST00000109556.9	5310	13	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	14.2971928091574	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTATGGTGGTAATTTATA	NA	False	NA	7	True	AATAAA	-17	NA	94763825	94794549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_94764071_94765592_94765739_94773899_94773947_94778702_94778804_94781231_94781349_94781880_94781973_94782163_94782293_94782671_94782786_94784343_94784424_94784677_94784992_94789594_94789718_94790096_94790156_94790806
transcript_56177.known	chr8	+	5141	12	FSM	ENSMUSG00000033009.16	ENSMUST00000093301.9	5141	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	46.8020272217573	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTATGGTGGTAATTTATA	NA	False	NA	7	True	AATAAA	-17	NA	94763865	94794549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_94764071_94765592_94765739_94773899_94773947_94778702_94778804_94781231_94781349_94781880_94781973_94782671_94782786_94784343_94784424_94784677_94784992_94789594_94789718_94790096_94790156_94790806
transcript_56180.nnic	chr8	+	2405	3	NNC	ENSMUSG00000033009.16	novel	718	7	NA	NA	-11	4326	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_2	80	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTC	NA	False	NA	NA	False	NA	NA	NA	94763854	94770406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_94764071_94765592_94765739_94768363
transcript_56181.known	chr8	-	3064	17	FSM	ENSMUSG00000031755.7	ENSMUST00000034206.6	3064	17	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_15	7.54569413639329	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTTGTTGTTTATAAATT	NA	False	NA	-3	True	AATAAA	-15	NA	94825556	94794581	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_94795011_94796589_94796739_94800919_94801033_94801750_94801889_94803579_94803712_94806110_94806241_94807395_94807568_94807652_94807798_94808625_94808766_94808983_94809120_94813283_94813371_94813458_94813564_94814004_94814083_94815730_94815794_94816389_94816516_94819022_94819251_94824863
transcript_56182.known	chr8	-	491	2	FSM	ENSMUSG00000031755.7	ENSMUST00000170208.2	491	2	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGGCTGAAAGCCTCCTTC	5630	False	NA	NA	False	NA	NA	NA	94796841	94794771	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_94795011_94796589
transcript_56183.known	chr8	+	398	3	FSM	ENSMUSG00000031757.8	ENSMUST00000034207.8	398	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGGTGGCTCAGAGTAT	6281	False	NA	NA	False	AATAAA	-16	NA	94863824	94865659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_94863901_94864858_94864925_94865403
transcript_56184.known	chr8	+	536	3	FSM	ENSMUSG00000031760.10	ENSMUST00000034211.10	536	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	1	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCAAGACTGGTCTCTTT	NA	False	NA	7	True	AATAAA	-17	NA	94879234	94880774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_94879459_94879652_94879719_94880528
transcript_56185.known	chr8	+	511	3	FSM	ENSMUSG00000031762.8	ENSMUST00000034214.8	511	3	0	0	0	0	multi-exon	FALSE	canonical	3	13494	junction_2	132	8321	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGTCTCTGTGCATTGGT	NA	False	NA	37	True	AATAAA	-23	NA	94899291	94900196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_94899504_94899754_94899821_94899963
transcript_56187.known	chr8	+	388	3	FSM	ENSMUSG00000031762.8	ENSMUST00000212806.2	388	3	0	0	0	0	multi-exon	TRUE	canonical	3	461	junction_1	6516.5	1121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGCTTGTCTCTGTGCAT	NA	False	NA	33	True	AATAAA	-19	NA	94899487	94900192	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_94899581_94899754_94899821_94899963
transcript_56190.known	chr8	+	549	3	FSM	ENSMUSG00000031765.9	ENSMUST00000034215.8	549	3	0	0	0	0	multi-exon	FALSE	canonical	3	14682	junction_2	74.5	9583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	False	NA	29	True	AATAAA	-18	NA	94905709	94906955	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_94905967_94906450_94906517_94906729
transcript_56193.known	chr8	+	633	2	FSM	ENSMUSG00000031765.9	ENSMUST00000212291.2	633	2	0	0	0	0	multi-exon	FALSE	canonical	3	14831	junction_1	0	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCTGGTTTTCTTGGTGTGG	NA	False	NA	29	True	AATAAA	-18	NA	94905838	94906955	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_94905967_94906450
transcript_56194.known	chr8	+	1085	1	FSM	ENSMUSG00000031765.9	ENSMUST00000211807.2	1085	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTCTGGTTTTCTTGGTGT	NA	False	NA	27	True	AATAAA	-16	NA	94905868	94906953	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_94905900_94907000
transcript_56195.known	chr8	+	301	2	FSM	ENSMUSG00000110524.2	ENSMUST00000212456.2	301	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACTTCATTCTGATCTGGTT	NA	False	NA	-3	True	ATTAAA	-7	NA	94909916	94911597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_94910038_94911417
transcript_56197.known	chr8	+	2928	23	FSM	ENSMUSG00000032939.15	ENSMUST00000212824.2	2928	23	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	328.081966678305	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATGAGCAAGGAATCAAAGCC	NA	False	NA	NA	False	ATTAAA	-15	NA	94941228	95041694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_94941260_94947187_94947240_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
transcript_56199.known	chr8	+	2707	22	FSM	ENSMUSG00000032939.15	ENSMUST00000079961.14	2707	22	0	0	0	0	multi-exon	FALSE	canonical	3	950	junction_1	70.7360075664432	282	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTTTTCCTTTTTTTT	NA	False	NA	26	True	AATAAA	-27	NA	94941191	95041488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_94941260_94954290_94954484_94970281_94970400_95007898_95007962_95013116_95013246_95019295_95019371_95021648_95021739_95023077_95023218_95027387_95027521_95028695_95028854_95030227_95030394_95030787_95030882_95031867_95032060_95032652_95032780_95032901_95032975_95033229_95033275_95034468_95034586_95035531_95035651_95036215_95036334_95036926_95037011_95038160_95038290_95041212
transcript_56205.known	chr8	+	1873	8	FSM	ENSMUSG00000031770.17	ENSMUST00000034220.8	1873	8	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	160.784175279808	213	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCAGAGACTCCCATTGTCC	NA	False	NA	28	True	AATAAA	-21	NA	95113122	95121986	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_95113367_95115983_95116062_95116151_95116224_95117345_95117477_95118359_95118483_95118801_95119153_95120423_95120530_95121218
transcript_5621.known	chr10	-	2120	16	FSM	ENSMUSG00000020166.16	ENSMUST00000169921.8	2120	16	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_15	117.305110242005	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTGAAGATCCTTC	NA	False	NA	-12	True	AATAAA	-19	NA	116417416	116321691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385011_116417357
transcript_56210.known	chr8	+	3852	15	FSM	ENSMUSG00000050079.11	ENSMUST00000060389.10	3852	15	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	22.9280151245375	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTCACAGCTCTCATT	8111	False	NA	8	True	AATAAA	-25	NA	95328564	95386903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_95329059_95349461_95349964_95355683_95355737_95356377_95356491_95358683_95358811_95359733_95359793_95362052_95362120_95363251_95363384_95364890_95365007_95366150_95366295_95373211_95373324_95376380_95376484_95376822_95376976_95380854_95380960_95385331
transcript_56214.known	chr8	+	3397	15	FSM	ENSMUSG00000050079.11	ENSMUST00000211983.2	3397	15	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	38.5556184529014	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTTCACAGCTCTCATT	8240	False	NA	8	True	AATAAA	-25	NA	95328693	95386903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_95328733_95349461_95349964_95355683_95355737_95356377_95356491_95358683_95358811_95359733_95359793_95362052_95362120_95363251_95363384_95364890_95365007_95366150_95366295_95373211_95373324_95376380_95376484_95376822_95376976_95380854_95380960_95385331
transcript_5622.known	chr10	-	2800	16	FSM	ENSMUSG00000020166.16	ENSMUST00000105267.8	2800	16	0	0	0	0	multi-exon	FALSE	canonical	3	333	junction_15	67.9643697503005	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGCAGTGTTGGCTTTGAT	NA	False	NA	-6	True	AATAAA	-18	NA	116417405	116321070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116363731_116363855_116384937_116385081_116417357
transcript_56220.nic	chr8	-	1858	9	NIC	ENSMUSG00000031774.9	novel	828	9	NA	NA	0	717	intron_retention	FALSE	canonical	0	0	junction_3	229.797975132506	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3861	False	NA	-4	True	AATAAA	-23	NA	95328354	95301567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95323678_95323737_95328124
transcript_56221.known	chr8	-	828	9	FSM	ENSMUSG00000031774.9	ENSMUST00000212791.2	828	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	235.276399953331	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCGGACCTCCCTCCATCCAC	3874	False	NA	NA	False	NA	NA	NA	95328341	95302446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95323678_95323737_95328262
transcript_56222.nic	chr8	-	1805	9	NIC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	34	717	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	197.424036023986	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3759	False	NA	-4	True	AATAAA	-23	NA	95328456	95301567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124_95328213_95328309
transcript_56223.known	chr8	-	2873	8	FSM	ENSMUSG00000031774.9	ENSMUST00000034226.8	2873	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	171.915855070118	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTCTTGTTGTCACTGTT	3590	False	NA	NA	False	NA	NA	NA	95328625	95300765	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328124
transcript_56226.nic	chr8	-	1670	8	NIC	ENSMUSG00000031774.9	novel	828	9	NA	NA	-8	717	combination_of_known_junctions	FALSE	canonical	0	0	junction_3	220.053796762037	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3853	False	NA	-4	True	AATAAA	-23	NA	95328362	95301567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95315938_95316036_95328262
transcript_56229.nnic	chr8	-	1706	7	NIC	ENSMUSG00000031774.9	novel	2873	8	NA	NA	-3	717	intron_retention	FALSE	canonical	0	0	junction_3	218.907451271587	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CGTTAGAGAAGCAAACTTAC	3858	False	NA	-4	True	AATAAA	-23	NA	95328357	95301567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_95302486_95306027_95306093_95309511_95309643_95313951_95314074_95314630_95314730_95315403_95315542_95328124
transcript_56230.known	chr8	+	2063	6	FSM	ENSMUSG00000031776.18	ENSMUST00000034228.16	2063	6	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_5	11.4612390255155	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTTGATGTGCATTGTCC	NA	False	NA	12	True	AGTAAA	-25	NA	95393227	95401053	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_95393530_95394224_95394287_95396948_95397056_95397922_95398009_95398689_95398787_95399644
transcript_56233.known	chr8	-	1926	4	FSM	ENSMUSG00000031775.6	ENSMUST00000034227.6	1926	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	2.16024689946929	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCCTTCTGGGTCTTTT	417	False	NA	NA	False	ATTAAA	-16	NA	95422906	95401521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_95402908_95403853_95403977_95405972_95406147_95422663
transcript_56235.known	chr8	+	1789	9	FSM	ENSMUSG00000031782.16	ENSMUST00000034234.15	1789	9	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_5	12.7322179921646	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTGTTGTTTTGTCTAT	NA	False	NA	9	True	AATAAA	-15	NA	95564948	95581523	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_95565126_95569245_95569397_95571404_95571541_95576752_95576896_95577142_95577228_95578478_95578584_95579742_95579899_95580232_95580287_95580741
transcript_56241.known	chr8	-	4359	9	FSM	ENSMUSG00000031781.15	ENSMUST00000162538.9	4359	9	0	0	0	0	multi-exon	FALSE	canonical	3	1341	junction_8	171.134997881789	945	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTCTGGAGTGGTCTAGGG	NA	False	NA	NA	False	NA	NA	NA	95564986	95546431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_95549836_95550280_95550360_95551843_95551960_95553262_95553337_95554904_95555068_95555781_95555859_95558400_95558554_95559142_95559329_95564879
transcript_56244.known	chr8	+	831	8	FSM	ENSMUSG00000031782.16	ENSMUST00000159871.4	831	8	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	58.5585351662448	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACGGGTCTAAACCAGCGTC	NA	False	NA	NA	False	NA	NA	NA	95565030	95580752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_95565126_95569245_95569397_95571404_95571541_95576752_95576896_95577142_95577228_95579742_95579899_95580232_95580287_95580741
transcript_56253.known	chr8	+	1580	9	FSM	ENSMUSG00000031783.11	ENSMUST00000109521.4	1580	9	0	0	0	0	multi-exon	FALSE	canonical	3	1933	junction_5	86.4056566435323	1980	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAATTGCTTTAATTGCATT	NA	False	NA	NA	False	AATAAA	-17	NA	95584077	95590870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_95584270_95584374_95584425_95586871_95586941_95587071_95587125_95588338_95588468_95588809_95588862_95589148_95589318_95589437_95589513_95590079
transcript_56262.known	chr8	+	3616	14	FSM	ENSMUSG00000031785.17	ENSMUST00000179619.9	3616	14	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	9.58857801774418	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGTTTGGGTTTGTCT	679	False	NA	46	True	NA	NA	NA	95703734	95740845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_95704046_95729066_95729142_95729878_95730302_95731841_95731975_95732380_95732529_95732827_95732960_95733449_95733567_95733897_95733944_95734192_95734297_95734998_95735118_95736133_95736403_95737129_95737239_95738172_95738442_95739484
transcript_56265.known	chr8	-	536	3	FSM	ENSMUSG00000031789.18	ENSMUST00000184103.9	536	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATTAAAGAGTGTGACTTT	NA	False	NA	NA	False	NA	NA	NA	96020702	96017250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_96017716_96020183_96020221_96020668
transcript_56266.known	chr8	+	968	8	FSM	ENSMUSG00000090206.9	ENSMUST00000161029.9	968	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.59078981795143	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGAGGCCCTAGGCTCGTGG	NA	False	NA	NA	False	AATAAA	-16	NA	96038142	96047957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_96038319_96039582_96039808_96046303_96046366_96046613_96046789_96047109_96047172_96047277_96047343_96047533_96047567_96047787
transcript_56268.nic	chr8	+	1731	7	NIC	ENSMUSG00000031792.16	novel	1758	7	NA	NA	8	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	78.3212756677406	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGTGTCTTATTTTAA	NA	False	NA	12	True	AATAAA	-13	NA	96058919	96074135	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_96059075_96059995_96060163_96065261_96065446_96069749_96069804_96070584_96070691_96071916_96072001_96073154
transcript_56269.known	chr8	+	1758	7	FSM	ENSMUSG00000031792.16	ENSMUST00000034245.16	1758	7	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_6	19.6185852927495	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGTGGTGTCTTATTTTAA	NA	False	NA	12	True	AATAAA	-13	NA	96058911	96074135	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_96059094_96059995_96060163_96065261_96065446_96069749_96069804_96070584_96070691_96071916_96072001_96073154
transcript_56271.known	chr8	-	1295	6	FSM	ENSMUSG00000031796.8	ENSMUST00000034249.8	1295	6	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_1	23.7200337267888	457	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATCTTTACTTTTTTATA	NA	False	NA	-6	True	AATAAA	-24	NA	96161497	96146876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149523_96151244_96151325_96161115
transcript_56274.known	chr8	-	1023	5	FSM	ENSMUSG00000031796.8	ENSMUST00000212684.2	1023	5	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_4	193.603977231874	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CGGAAGAATTAGAGACGTCC	NA	False	NA	NA	False	NA	NA	NA	96161458	96147029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_96147298_96147763_96147875_96148685_96148875_96149410_96149523_96161115
transcript_56278.known	chr8	-	3773	12	FSM	ENSMUSG00000046707.10	ENSMUST00000056919.9	3773	12	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_1	43.8225195891393	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAATGACTTTCATGGGATG	NA	False	NA	NA	False	AATAAA	-20	NA	96215455	96172723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_96175047_96179977_96180072_96182485_96182635_96184015_96184117_96186699_96186802_96187305_96187417_96188173_96188258_96192278_96192339_96199998_96200050_96203839_96203942_96214192_96214305_96214971
transcript_56279.known	chr8	+	1288	9	FSM	ENSMUSG00000036598.5	ENSMUST00000041569.5	1288	9	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	2.77263412660235	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTCCTCTCACTTGTTG	NA	False	NA	NA	False	ATTAAA	-23	NA	96260712	96285518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_96260901_96263092_96263220_96264719_96264882_96267426_96267583_96269249_96269331_96272521_96272678_96277824_96277933_96283818_96283975_96285364
transcript_56280.known	chr8	+	2519	3	FSM	ENSMUSG00000031669.11	ENSMUST00000034094.11	2519	3	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_2	2	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGTGTTGTCACTAACTG	NA	False	NA	NA	False	AATAAA	-14	NA	96360080	96371688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_96360412_96364437_96364672_96369734
transcript_56284.known	chr8	+	654	2	FSM	ENSMUSG00000031669.11	ENSMUST00000212434.2	654	2	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGTTAAGAATACATACTGC	NA	False	NA	NA	False	NA	NA	NA	96360181	96364861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_96360412_96364437
transcript_56287.known	chr8	+	2738	14	FSM	ENSMUSG00000036564.18	ENSMUST00000080666.8	2738	14	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	6.1711295754251	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTGTGTCGTGTTTCCTATC	NA	False	NA	9	True	AATAAA	-14	NA	96429690	96441584	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_96429806_96432815_96432922_96433158_96433280_96433364_96433428_96433556_96433618_96435235_96435323_96435404_96435462_96435710_96435815_96436393_96436451_96436530_96436583_96437291_96437340_96437561_96437598_96437720_96437773_96439805
transcript_56289.nnic	chr8	+	1384	7	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	16	0	combination_of_known_splicesites	FALSE	canonical	3	22	junction_1	132.221720353856	37	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAAACTTTCTTTAGCAC	NA	False	NA	39	True	AATAAA	-26	NA	96442524	96445638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_96442592_96442980_96443123_96443234_96443430_96443548_96443670_96444548_96444730_96444820_96444964_96445103
transcript_5629.known	chr10	-	2693	15	FSM	ENSMUSG00000020166.16	ENSMUST00000168036.8	2693	15	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_13	136.561565692876	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGTTGGCTTTGATTTGAA	NA	False	NA	-1	True	AATAAA	-23	NA	116417416	116321065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116353221_116353289_116384937_116385081_116417357
transcript_56292.nic	chr8	+	1233	6	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	5	junction_1	150.720403396488	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAAACTTTCTTTAGCAC	NA	False	NA	39	True	AATAAA	-26	NA	96442533	96445638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_96442592_96443234_96443430_96443548_96443670_96444548_96444730_96444820_96444964_96445103
transcript_56294.nnic	chr8	+	1082	5	NIC	ENSMUSG00000031671.12	novel	1707	7	NA	NA	16	0	combination_of_known_splicesites	TRUE	canonical	3	22	junction_1	177.171350674989	27	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAAACTTTCTTTAGCAC	NA	False	NA	39	True	AATAAA	-26	NA	96442524	96445638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_96442592_96442980_96443123_96443234_96443430_96444820_96444964_96445103
transcript_56302.nic	chr8	-	1590	11	ISM	ENSMUSG00000036550.17	ENSMUST00000212228.2	2925	13	-26	2982	-24	0	5prime_fragment	FALSE	canonical	3	1066	junction_5	84.9173716032238	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGGGCAATTTACCTAT	NA	False	NA	NA	False	AATAGA	-36	NA	96534116	96491561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_96491779_96496128_96496240_96496371_96496499_96497169_96497339_96498598_96498803_96500059_96500115_96500198_96500268_96501257_96501357_96501906_96502015_96515257_96515533_96533960
transcript_56304.known	chr8	-	338	3	FSM	ENSMUSG00000110489.2	ENSMUST00000212289.2	338	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	187	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAAATAGTACTGGTATG	NA	False	NA	-4	True	TTTAAA	-1	NA	96544306	96535179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_96535388_96539051_96539129_96544253
transcript_56305.known	chr8	-	153	3	FSM	ENSMUSG00000110489.2	ENSMUST00000212957.2	153	3	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_1	80.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGACCCACCCAGTGGCTC	NA	False	NA	NA	False	NA	NA	NA	96544319	96535340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_96535388_96539088_96539129_96544253
transcript_56306.known	chr8	+	789	1	FSM	ENSMUSG00000061104.6	ENSMUST00000074053.6	789	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	554	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	TATAAA	-31	NA	96551973	96552762	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_96552000_96552800
transcript_56307.known	chr8	-	3333	12	FSM	ENSMUSG00000036534.7	ENSMUST00000040481.4	3333	12	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_11	95.4970468151409	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTCTCCTTTATCTTCT	NA	False	NA	0	True	AATAAA	-19	NA	96580167	96562547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_96564300_96567041_96567097_96568149_96568350_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429_96579536_96580099
transcript_56308.known	chr8	-	3315	12	FSM	ENSMUSG00000036534.7	ENSMUST00000212270.2	3315	12	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_11	48.4964001390441	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACTGTGTCTCCTTTATC	NA	False	NA	-4	True	AATAAA	-15	NA	96580167	96562551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_96564300_96567041_96567097_96568149_96568350_96568803_96568952_96570387_96570503_96570731_96570790_96571515_96571615_96572426_96572572_96572760_96572960_96575008_96575397_96579429_96579536_96580113
transcript_56314.known	chr8	-	2530	10	FSM	ENSMUSG00000031672.9	ENSMUST00000034097.8	2530	10	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_1	94.2456731822753	879	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACTGTCTGCTTTTCTACT	NA	False	NA	-4	True	AATAAA	-17	NA	96615175	96590761	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_96591880_96593448_96593600_96596099_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
transcript_56316.nic	chr8	-	1302	8	ISM	ENSMUSG00000031672.9	ENSMUST00000034097.8	2530	10	137	5160	-18	178	5prime_fragment	FALSE	canonical	3	549	junction_7	40.4772548879652	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTCAAGTTCAGTTGAAATAC	NA	False	NA	NA	False	AATAAA	-17	NA	96615038	96595921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_96596266_96597402_96597554_96598518_96598624_96598803_96598966_96601031_96601092_96602373_96602503_96604340_96604498_96614844
transcript_56320.known	chr8	-	2057	1	FSM	ENSMUSG00000031672.9	ENSMUST00000212861.2	2057	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	ACAAAAAAAAAAAAAAAAGT	NA	False	NA	NA	False	NA	NA	NA	96615020	96612963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_96613000_96615000
transcript_56321.known	chr8	+	1545	1	FSM	ENSMUSG00000071041.5	ENSMUST00000120826.2	1545	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	94	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGATCCAGTATATGCC	NA	False	NA	NA	False	NA	NA	NA	100757189	100758734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_100757200_100758700
transcript_56322.known	chr8	-	954	1	FSM	ENSMUSG00000063696.8	ENSMUST00000076373.8	954	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCGTCAAAGCAACCAAGTC	NA	False	NA	NA	False	NA	NA	NA	103592430	103591476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_103591500_103592400
transcript_56323.known	chr8	-	2406	10	FSM	ENSMUSG00000035824.8	ENSMUST00000050211.7	2406	10	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_4	11.1055541659718	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCATTCATTCATTCAT	NA	False	NA	6	True	AATAAA	-30	NA	104975190	104953316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_104954984_104955844_104955926_104957176_104957257_104957791_104957881_104963403_104963478_104965375_104965466_104967747_104967802_104970016_104970092_104974278_104974317_104975032
transcript_56324.known	chr8	-	2312	9	FSM	ENSMUSG00000035824.8	ENSMUST00000211995.2	2312	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	19.1012924955355	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGATGTAAATTCATTTTCA	NA	False	NA	-7	True	AATAAA	-17	NA	104975183	104953329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_104954984_104955844_104955926_104957176_104957257_104957791_104957881_104965375_104965466_104967747_104967802_104970016_104970092_104974278_104974317_104975032
transcript_56325.known	chr8	+	750	5	FSM	ENSMUSG00000054400.17	ENSMUST00000212410.2	750	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	127.002706664071	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTCTGCAGATCTCCTT	4823	False	NA	10	True	ATTAAA	-22	NA	104977523	104990079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_104977728_104983916_104984076_104988105_104988202_104988799_104988914_104989902
transcript_56327.known	chr8	+	667	4	FSM	ENSMUSG00000054400.17	ENSMUST00000034342.13	667	4	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_3	21.1397466609439	157	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTCTGCAGATCTCCTT	4792	False	NA	10	True	ATTAAA	-22	NA	104977492	104990079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_104977728_104983916_104984076_104988105_104988202_104989902
transcript_56329.known	chr8	+	1304	2	FSM	ENSMUSG00000054400.17	ENSMUST00000212433.2	1304	2	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGTAAAACACAGCTTAATT	4813	False	NA	NA	False	NA	NA	NA	104977513	104985006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_104977728_104983916
transcript_56330.known	chr8	+	525	3	FSM	ENSMUSG00000054400.17	ENSMUST00000211809.2	525	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	140	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATATATTTTCTGCAGATCT	4834	False	NA	6	True	ATTAAA	-18	NA	104977534	104990075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_104977728_104983916_104984076_104989902
transcript_56331.known	chr8	+	1616	5	FSM	ENSMUSG00000031875.8	ENSMUST00000034343.5	1616	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	6.68954408012983	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGAGTGCGCCTGACT	NA	False	NA	13	True	ATTAAA	-15	NA	105067225	105074304	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_105067528_105070389_105070546_105071408_105071505_105071903_105072025_105073363
transcript_56332.known	chr8	-	4627	13	FSM	ENSMUSG00000035770.9	ENSMUST00000041769.8	4627	13	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_6	10.797054639525	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTTTTGGTGACTTTGTT	1768	False	NA	-1	True	AATAAA	-20	NA	105169679	105144311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_105147315_105148918_105149036_105149744_105149863_105150217_105150260_105152070_105152131_105152590_105152703_105154677_105154814_105156046_105156141_105157032_105157203_105163994_105164226_105167105_105167223_105169105_105169180_105169326
transcript_56336.nic	chr8	-	1918	12	ISM	ENSMUSG00000035770.9	ENSMUST00000212654.2	1780	14	73	1274	73	-1274	5prime_fragment	FALSE	canonical	3	129	junction_5	11.139238960903	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAATCACATCCTTTCATTA	1980	False	NA	NA	False	AATAAA	-16	NA	105169467	105148412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_105149036_105149744_105149863_105150217_105150260_105152070_105152131_105152590_105152703_105154677_105154814_105156046_105156141_105157032_105157203_105163994_105164226_105167105_105167223_105169105_105169180_105169326
transcript_56339.known	chr8	-	1808	20	FSM	ENSMUSG00000031878.19	ENSMUST00000034349.10	1808	20	0	0	0	0	multi-exon	FALSE	canonical	3	645	junction_15	52.7352662859429	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3333	False	NA	NA	False	AATAAA	-19	NA	105261269	105237659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254009_105254082_105254818_105254850_105256687_105256749_105257024_105257129_105261143
transcript_56344.known	chr8	-	1735	19	FSM	ENSMUSG00000031878.19	ENSMUST00000162466.8	1735	19	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_15	163.229558869982	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTCTTGTTGTCTGGAA	3334	False	NA	NA	False	AATAAA	-19	NA	105261268	105237659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_105237900_105239831_105239882_105239972_105240088_105242760_105242854_105243279_105243367_105244538_105244579_105244819_105244896_105246176_105246311_105246395_105246456_105249278_105249371_105249793_105249858_105250207_105250271_105250966_105251077_105252911_105253022_105253714_105253795_105254818_105254850_105256687_105256749_105257024_105257129_105261143
transcript_56357.known	chr8	+	5692	2	FSM	ENSMUSG00000048371.9	ENSMUST00000059588.8	5692	2	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCTTCCTTTAGTTCGA	NA	False	NA	NA	False	AATAAA	-16	NA	105318082	105325658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_105318228_105320111
transcript_56359.known	chr8	-	639	5	FSM	ENSMUSG00000031879.15	ENSMUST00000093234.5	639	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	369.363641957353	423	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCCCAGTATGCCTTAGCG	NA	False	NA	-10	True	AATAAA	-18	NA	105368333	105366479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_105366719_105367151_105367198_105367599_105367721_105367942_105368023_105368180
transcript_56362.known	chr8	-	807	4	FSM	ENSMUSG00000031879.15	ENSMUST00000163140.2	807	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	52.8288641642889	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATGCCTTAGCGTCTCTCA	NA	False	NA	-3	True	AATAAA	-25	NA	105368331	105366472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_105366719_105367151_105367198_105367599_105367726_105367942
transcript_56363.nnic	chr8	+	2646	6	NNC	ENSMUSG00000031885.15	novel	395	2	NA	NA	-247	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_1	76.1876630433038	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATGACTCTTTATTGATA	3499	False	NA	82	True	ATTAAA	-22	NA	105897058	105944621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_105897202_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929180_105942535
transcript_56367.nnic	chr8	+	2612	6	NNC	ENSMUSG00000031885.15	novel	395	2	NA	NA	-232	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	74.3220021258846	13	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAGTCATGACTCTT	3514	False	NA	74	True	ATTAAA	-14	NA	105897073	105944613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_105897160_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929211_105942535
transcript_56368.known	chr8	+	2883	6	FSM	ENSMUSG00000031885.15	ENSMUST00000052209.9	2883	6	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_5	43.0748186299142	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATGACTCTTTATTGATA	3746	False	NA	82	True	ATTAAA	-22	NA	105897305	105944621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929180_105942535
transcript_5637.known	chr10	-	2268	14	FSM	ENSMUSG00000020166.16	ENSMUST00000105265.8	2268	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_12	150.969411847597	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGAATGTGTATATATTATA	NA	False	NA	-9	True	AATAAA	-12	NA	116417406	116321413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116339939_116340020_116342133_116342317_116342945_116343094_116384937_116385081_116417357
transcript_56370.known	chr8	+	2891	6	FSM	ENSMUSG00000031885.15	ENSMUST00000109392.9	2891	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_5	26.6578318698277	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAGTCATGACTCTT	3761	False	NA	74	True	ATTAAA	-14	NA	105897320	105944613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_105897686_105897937_105898025_105905224_105905342_105921106_105921224_105929083_105929211_105942535
transcript_56377.nic	chr8	+	2540	5	NIC	ENSMUSG00000031885.15	novel	371	3	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	81.6467237554576	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAACAAAGTCATGACTCTT	4636	False	NA	74	True	ATTAAA	-14	NA	105898195	105944613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_105898297_105905224_105905342_105921106_105921224_105929083_105929211_105942535
transcript_56380.known	chr8	+	2916	16	FSM	ENSMUSG00000031889.10	ENSMUST00000034361.10	2916	16	0	0	0	0	multi-exon	TRUE	canonical	3	239	junction_9	14.7126551724093	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGCTGTTGATTTCCTT	NA	False	NA	NA	False	ACTAAA	-2	NA	105951776	105979685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_105952119_105957759_105957843_105961113_105961198_105965054_105965099_105966302_105966383_105966609_105966705_105967472_105967571_105967658_105967772_105973052_105973187_105973469_105973554_105974727_105974811_105975374_105975419_105976050_105976095_105976228_105976288_105977350_105977424_105978229
transcript_56383.known	chr8	-	1689	5	FSM	ENSMUSG00000031887.14	ENSMUST00000034359.10	1689	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	9.66953980290686	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTGGTGCACGCCTTTAAT	505	False	NA	NA	False	AAAACA	-43	NA	105991241	105984917	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_105985928_105986068_105986262_105986341_105986620_105987153_105987313_105991192
transcript_56388.known	chr8	+	1901	3	FSM	ENSMUSG00000033313.12	ENSMUST00000036221.12	1901	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTGATCTCGAGTCAGCT	1530	False	NA	NA	False	AATAAA	-20	NA	105991279	105995958	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_105991393_105993326_105993798_105994641
transcript_56389.known	chr8	-	2497	14	FSM	ENSMUSG00000043251.7	ENSMUST00000057855.4	2497	14	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_13	7.19467258528611	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTCTGAATCTATGTGTTG	NA	False	NA	-1	True	AATAAA	-15	NA	106022730	106016555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106016783_106016863_106016989_106017080_106017237_106017313_106017437_106017554_106017685_106018966_106019078_106019280_106019382_106019483_106019610_106019693_106019812_106019883_106020494_106021596_106021817_106021891_106022068_106022257_106022339_106022537
transcript_56391.known	chr8	-	2161	13	FSM	ENSMUSG00000043251.7	ENSMUST00000212777.2	2161	13	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_11	8.1594355741613	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACGTCTGAATCTATGTGT	NA	False	NA	-3	True	AATAAA	-13	NA	106022572	106016557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106016783_106016863_106016989_106017080_106017237_106017313_106017437_106017554_106017685_106018966_106019078_106019280_106019382_106019483_106019610_106019693_106019812_106019883_106020494_106021596_106021817_106022257_106022339_106022537
transcript_56392.known	chr8	-	3552	8	FSM	ENSMUSG00000014837.16	ENSMUST00000171788.8	3552	8	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_6	10.3628063333269	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGTGTGGCTTCTGTCTA	NA	False	NA	-3	True	NA	NA	NA	106016160	106007041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106015400_106015798_106016035
transcript_56394.known	chr8	-	3492	7	FSM	ENSMUSG00000014837.16	ENSMUST00000014981.8	3492	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_6	11.0302614051829	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGGCTTCTGTCTAC	NA	False	NA	-2	True	NA	NA	NA	106016496	106007040	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106008777_106009618_106009717_106009806_106010113_106011297_106011431_106011661_106011806_106011887_106012502_106016035
transcript_56397.known	chr8	+	3176	4	FSM	ENSMUSG00000014776.8	ENSMUST00000014920.8	3176	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	2.05480466765633	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTGTCAAGAGCGTCTG	NA	False	NA	NA	False	CATAAA	-23	NA	106002771	106008571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106003246_106005605_106005903_106006047_106006408_106006526
transcript_564.nnic	chr1	-	1801	11	NNC	ENSMUSG00000046337.18	novel	1659	10	NA	NA	32	51	at_least_one_novel_splicesite	FALSE	canonical	3	62	junction_8	39.9335698379196	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTGTCTTATGCAATTAGC	NA	False	NA	NA	False	AGTAAA	-2	NA	36722232	36639005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36695891_36696015_36698444_36698507_36699815_36700131_36721948
transcript_56403.known	chr8	+	1993	10	FSM	ENSMUSG00000014859.10	ENSMUST00000015003.10	1993	10	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	369.398142461925	52	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGATCTGGTTCTTTGG	NA	False	NA	21	True	AATAAA	-17	NA	106024294	106032002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106024508_106024912_106025023_106025166_106025329_106025627_106025672_106026689_106026752_106026950_106027249_106027884_106028098_106030816_106030865_106031064_106031110_106031204
transcript_56405.known	chr8	+	3189	20	FSM	ENSMUSG00000014791.11	ENSMUST00000109375.4	3189	20	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_11	6.90778195396653	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAAATAAAACAAAAAC	NA	False	NA	NA	False	ATTAAA	-44	NA	106032240	106037392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106032462_106032598_106032640_106032746_106032820_106033009_106033061_106033227_106033398_106033485_106033586_106033670_106033823_106033919_106033999_106034094_106034146_106034226_106034350_106034433_106034566_106034665_106034768_106034863_106034973_106035080_106035218_106035303_106035468_106035553_106035667_106035745_106035851_106035956_106036040_106036124_106036212_106036296
transcript_56408.known	chr8	+	2303	18	FSM	ENSMUSG00000014791.11	ENSMUST00000212046.2	2303	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	9.55008650479853	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTATGTGTTAAATCAGCTC	NA	False	NA	6	True	AATAAA	-17	NA	106032232	106036609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106032462_106032598_106032640_106033227_106033398_106033472_106033586_106033670_106033823_106033919_106033999_106034094_106034146_106034226_106034350_106034433_106034566_106034665_106034768_106034863_106034973_106035080_106035218_106035303_106035468_106035553_106035667_106035745_106035851_106035956_106036040_106036124_106036212_106036296
transcript_56409.known	chr8	-	2304	7	FSM	ENSMUSG00000041679.10	ENSMUST00000210412.2	2304	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	2.73353657780945	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATCTTATGACTTTCTCTG	6346	False	NA	NA	False	ATTAAA	-7	NA	106052891	106038979	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106039578_106039676_106039895_106040052_106040197_106040312_106040529_106041707_106042701_106049896_106049999_106052858
transcript_56411.known	chr8	-	3928	22	FSM	ENSMUSG00000014778.11	ENSMUST00000014922.5	3928	22	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	2.64789309989673	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAGAGCCTTTCTCTTCTTT	NA	False	NA	-1	True	AATAAA	-19	NA	106074585	106055794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106056112_106056200_106056402_106056478_106056642_106056726_106056920_106057018_106057210_106057760_106057923_106058001_106058122_106058273_106058457_106058668_106058825_106059541_106060237_106061318_106061435_106063013_106063194_106063270_106063429_106063518_106063663_106063754_106063850_106063949_106064062_106064306_106064402_106064483_106064590_106064661_106064730_106065033_106065099_106065485_106065593_106074284
transcript_56413.known	chr8	+	785	6	FSM	ENSMUSG00000014856.13	ENSMUST00000015000.12	785	6	0	0	0	0	multi-exon	FALSE	canonical	3	269	junction_4	56.0556865982391	261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGCCGTGTGGGTGATGATG	251	False	NA	18	True	AATAAA	-20	NA	106052985	106055689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055091_106055239_106055325_106055403
transcript_56416.known	chr8	+	801	6	FSM	ENSMUSG00000014856.13	ENSMUST00000153146.9	801	6	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	152.856010676715	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACGGCCGTGTGGGTGATGA	259	False	NA	16	True	AATAAA	-18	NA	106052993	106055687	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055117_106055239_106055325_106055403
transcript_56419.known	chr8	+	895	5	FSM	ENSMUSG00000014856.13	ENSMUST00000126705.9	895	5	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_2	13.1909059582729	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAACGGCCGTGTGGGTGA	1	True	NA	13	True	AATAAA	-15	NA	106053019	106055684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953_106055325_106055403
transcript_56420.nic	chr8	+	998	4	ISM	ENSMUSG00000014856.13	ENSMUST00000153146.9	801	6	2	3	2	0	intron_retention	FALSE	canonical	3	392	junction_2	12.9614813968157	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAACGGCCGTGTGGGTGA	261	False	NA	13	True	AATAAA	-15	NA	106052995	106055684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_106053107_106053682_106053779_106054801_106054862_106054953
transcript_56422.known	chr8	-	1127	4	FSM	ENSMUSG00000014846.13	ENSMUST00000014990.13	1127	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	3.55902608401044	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGGACTGACTCAGTCTACA	NA	False	NA	0	True	AATAAA	-19	NA	106198158	106194124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106194657_106194787_106194942_106195071_106195266_106197911
transcript_56425.known	chr8	-	1629	8	FSM	ENSMUSG00000013160.8	ENSMUST00000013304.8	1629	8	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_1	38.5115938016444	293	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGCTGTCTGTCTGCTCC	NA	False	NA	-10	True	AATAAA	-18	NA	106292679	106251096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106251697_106251788_106251867_106251954_106252132_106252255_106252334_106255805_106255886_106257446_106257626_106265952_106266125_106292414
transcript_56428.known	chr8	+	3782	12	FSM	ENSMUSG00000005698.16	ENSMUST00000005841.16	3782	12	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_10	73.0190736997323	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGAAGACTCCGTCTTTT	NA	False	NA	38	True	AATAAA	-21	NA	106363210	106409554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106363353_106370147_106370265_106390385_106391176_106391487_106391659_106393290_106393425_106396862_106396984_106397922_106398073_106401500_106401662_106402627_106402811_106403846_106403983_106406702_106406892_106408066
transcript_56431.known	chr8	-	674	5	FSM	ENSMUSG00000005705.11	ENSMUST00000194654.2	674	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	1.58113883008419	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGCAAGCTGGGTACGGCCAC	NA	False	NA	NA	False	NA	NA	NA	106306477	106293429	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106293571_106293751_106293835_106293991_106294125_106294237_106294359_106306281
transcript_56433.nnic	chr8	+	1467	3	NNC	ENSMUSG00000104168.2	novel	766	2	NA	NA	-40	4159	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	2	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTCTATATTTTATCCC	NA	False	NA	NA	False	NA	NA	NA	106292915	106308900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_106293103_106304178_106304486_106307927
transcript_56434.known	chr8	-	332	2	FSM	ENSMUSG00000098120.2	ENSMUST00000182046.2	332	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTGACCACCTCAGCCTCT	NA	False	NA	NA	False	AATAAA	-15	NA	106364117	106350981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106351108_106363911
transcript_56435.known	chr8	-	880	1	FSM	ENSMUSG00000110686.2	ENSMUST00000212546.2	880	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGGGTTTTTATATGAGAAA	NA	False	NA	NA	False	NA	NA	NA	106312832	106311952	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106312000_106312800
transcript_56437.known	chr8	-	3154	11	FSM	ENSMUSG00000038000.11	ENSMUST00000042608.8	3154	11	0	0	0	0	multi-exon	TRUE	canonical	3	179	junction_7	13.7637204272682	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTAATGTTATCCGGGTGA	NA	False	NA	NA	False	AATAAA	-12	NA	106427716	106423050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426210_106426363_106426492_106426528_106426635_106426681_106426913_106426991_106427078_106427173_106427334_106427472_106427551
transcript_56458.known	chr8	-	1182	9	FSM	ENSMUSG00000038000.11	ENSMUST00000212642.2	1182	9	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	85.2304779700314	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGGAGGAGAGAGATTCAGGG	NA	False	NA	-13	True	AATAAA	-16	NA	106427685	106424789	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106424961_106425039_106425132_106425245_106425596_106426026_106426124_106426492_106426528_106426635_106426681_106426913_106427035_106427334_106427472_106427551
transcript_5646.nic	chr10	-	2411	13	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_9	144.203246804255	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCAGTGTTGGCTTTGATT	NA	False	NA	-5	True	AATAAA	-19	NA	116417426	116321069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116353221_116353289_116363731_116363855_116384937_116385081_116417357
transcript_56460.known	chr8	+	678	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212634.2	678	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	13	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGGCTGAGAGTACAGGGC	NA	False	NA	NA	False	NA	NA	NA	106427779	106429555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106427919_106428805_106429029_106429239
transcript_56461.nic	chr8	+	1270	3	NIC	ENSMUSG00000005699.17	novel	1273	3	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_1	16.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGTGGTCCTTCTGTGTC	NA	False	NA	11	True	ATTAAA	-17	NA	106427754	106430125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_106427919_106428805_106429029_106429242
transcript_56462.known	chr8	+	1273	3	FSM	ENSMUSG00000005699.17	ENSMUST00000098444.9	1273	3	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_1	3	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGTGGTCCTTCTGTGTC	NA	False	NA	11	True	ATTAAA	-17	NA	106427785	106430125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106427950_106428805_106429029_106429239
transcript_56463.known	chr8	+	1234	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212352.2	1234	3	0	0	0	0	multi-exon	FALSE	canonical	2	20	junction_1	6.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAGATGTGGTCCTTCTGT	NA	False	NA	8	True	ATTAAA	-14	NA	106427818	106430122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106427950_106428805_106429029_106429242
transcript_56465.known	chr8	+	1265	3	FSM	ENSMUSG00000005699.17	ENSMUST00000093195.7	1265	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	5.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGATGTGGTCCTTCTGTGT	NA	False	NA	10	True	ATTAAA	-16	NA	106428278	106430124	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106428436_106428805_106429029_106429239
transcript_56466.known	chr8	+	1261	3	FSM	ENSMUSG00000005699.17	ENSMUST00000212430.2	1261	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	9	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATGTGGTCCTTCTGTGTC	NA	False	NA	11	True	ATTAAA	-17	NA	106428280	106430125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106428436_106428805_106429029_106429242
transcript_56468.nnic	chr8	-	1387	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	canonical	3	34	junction_7	49.3529562003563	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTGTTCCATAGGAG	NA	False	NA	-15	True	ATTAAA	-14	NA	106434797	106430283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434675
transcript_56469.nnic	chr8	-	1353	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_7	59.2993099729272	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTGTTCCATAGGAG	NA	False	NA	-15	True	ATTAAA	-14	NA	106434800	106430283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434712
transcript_56470.nnic	chr8	-	1328	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_7	45.9436211734623	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTGTTCCATAGGAG	NA	False	NA	-15	True	ATTAAA	-14	NA	106434851	106430283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434788
transcript_56471.nnic	chr8	-	1342	8	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	-37	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_7	58.9551887938143	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTGTTCCATAGGAG	NA	False	NA	-15	True	ATTAAA	-14	NA	106434879	106430283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455_106434556_106434802
transcript_56472.nnic	chr8	-	1467	7	NNC	ENSMUSG00000013155.11	novel	1275	7	NA	NA	-20	0	intron_retention	FALSE	canonical	3	34	junction_6	50.8887675884047	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTGTTCCATAGGAG	NA	False	NA	-15	True	ATTAAA	-14	NA	106434797	106430283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434556_106434675
transcript_56479.known	chr8	-	1275	7	FSM	ENSMUSG00000013155.11	ENSMUST00000013299.11	1275	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	11.5854314646552	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCTGTGTTCCATAGGAG	NA	False	NA	-15	True	ATTAAA	-14	NA	106434565	106430283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180_106434376_106434455
transcript_56480.known	chr8	-	1568	6	FSM	ENSMUSG00000013155.11	ENSMUST00000212716.2	1568	6	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_2	9.8508882848198	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCTGTGTTCCATAGGAGC	NA	False	NA	-14	True	ATTAAA	-15	NA	106434777	106430282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106430654_106430744_106430882_106430982_106431147_106431266_106431393_106433197_106433371_106434180
transcript_56481.known	chr8	-	951	4	FSM	ENSMUSG00000013150.16	ENSMUST00000155038.3	951	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	11.1455023315337	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGACGAGCTTATGGGG	NA	False	NA	NA	False	NA	NA	NA	106485262	106444048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106444283_106449480_106449677_106454619_106454964_106485085
transcript_56483.known	chr8	-	4352	3	FSM	ENSMUSG00000013150.16	ENSMUST00000013294.16	4352	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	4	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCACTTGAAAAAAGGTCTT	NA	False	NA	NA	False	NA	NA	NA	106485296	106440485	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106444283_106454619_106454964_106485085
transcript_56486.known	chr8	-	5308	14	FSM	ENSMUSG00000037415.8	ENSMUST00000239468.2	5308	14	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	8.84180495107755	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTCTGTTGTTCAGAAT	NA	False	NA	-1	True	ATTAAA	-19	NA	106553982	106494939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106498350_106498726_106498839_106499080_106499227_106499669_106499792_106500540_106500746_106500918_106501068_106501166_106501276_106502591_106502705_106506458_106506644_106508911_106508935_106513258_106513427_106532163_106532217_106552709_106552822_106553581
transcript_56490.nic	chr8	-	1850	14	NIC	ENSMUSG00000036672.6	novel	1814	13	NA	NA	-21	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_4	76.1652672088405	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGTTAGCGATATTGTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	106578661	106571304	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_106571628_106571705_106571811_106571891_106572069_106572796_106572854_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
transcript_56493.known	chr8	-	1814	13	FSM	ENSMUSG00000036672.6	ENSMUST00000040776.6	1814	13	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	25.0593739391514	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAAGAAAGTTAGCGATATT	NA	False	NA	NA	False	ATTAAA	-12	NA	106578686	106571308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106571628_106571705_106571811_106571891_106572069_106572947_106573024_106573279_106573433_106573615_106573811_106575382_106575532_106575644_106575688_106575818_106575956_106576056_106576154_106576257_106576346_106576464_106576556_106578502
transcript_5650.nic	chr10	-	1789	13	NIC	ENSMUSG00000020166.16	novel	2800	16	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	67	junction_9	144.203246804255	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTGAAGATCCTTC	NA	False	NA	-12	True	AATAAA	-19	NA	116417426	116321691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_116322192_116328196_116328342_116329597_116329699_116330727_116330778_116330864_116330927_116333990_116334148_116334242_116334364_116335246_116335372_116337096_116337223_116353221_116353289_116363731_116363855_116384937_116385081_116417357
transcript_56513.known	chr8	+	1819	1	FSM	ENSMUSG00000036442.9	ENSMUST00000040445.9	1819	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGGGTTTCGACTTTTTT	NA	False	NA	12	True	ATTAAA	-19	NA	106581763	106583582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106581800_106583600
transcript_56516.known	chr8	+	948	5	FSM	ENSMUSG00000008450.9	ENSMUST00000008594.9	948	5	0	0	0	0	multi-exon	FALSE	canonical	3	2641	junction_1	453.90775494587	148	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAACAGTTTAAATTGTTT	NA	False	NA	-8	True	AATAAA	-15	NA	106587211	106605962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141_106603241_106605436
transcript_56518.known	chr8	+	518	4	FSM	ENSMUSG00000008450.9	ENSMUST00000212398.2	518	4	0	0	0	0	multi-exon	FALSE	canonical	3	2641	junction_1	479.48606746066	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCCTTTACCTTCCCCGCTC	NA	False	NA	NA	False	NA	NA	NA	106587296	106603421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106587338_106602165_106602291_106602985_106603058_106603141
transcript_56521.known	chr8	+	4780	29	FSM	ENSMUSG00000036270.17	ENSMUST00000040254.16	4780	29	0	0	0	0	multi-exon	TRUE	canonical	3	268	junction_16	54.5128121057194	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGTCTTTGATGTGACTA	3256	False	NA	31	True	AATAAA	-23	NA	106607512	106619857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106607791_106611132_106611290_106611664_106611777_106612065_106612166_106612414_106612605_106612719_106612868_106612950_106613056_106613381_106613492_106613585_106613670_106613749_106613846_106613932_106614036_106614137_106614319_106614413_106614487_106614585_106614678_106614752_106614941_106615019_106615151_106615230_106615388_106615735_106616173_106616256_106616362_106616450_106616604_106616692_106616730_106616871_106617050_106617153_106617310_106617396_106617513_106617599_106617766_106617850_106618038_106618127_106618348_106618898_106619063_106619301
transcript_56522.known	chr8	+	617	3	FSM	ENSMUSG00000044287.7	ENSMUST00000060167.6	617	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTTCCTTTCTCCTGGC	NA	False	NA	NA	False	ATTAAA	-21	NA	106620198	106621655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106620300_106620997_106621113_106621254
transcript_56524.known	chr8	+	3255	3	FSM	ENSMUSG00000048310.9	ENSMUST00000049699.9	3255	3	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	10	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGAAGGCTGCCATTTTTT	NA	False	NA	-13	True	AATAAA	-17	NA	106627072	106658410	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106627173_106639251_106640279_106656282
transcript_56525.known	chr8	-	1311	8	FSM	ENSMUSG00000031897.10	ENSMUST00000034369.10	1311	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_7	110.839468399582	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTAAACAGAAGGCTGTG	NA	False	NA	-11	True	AATAAA	-16	NA	106665076	106662370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497_106663614_106663872_106664014_106664125_106664224_106664310_106664399_106664586
transcript_56528.known	chr8	-	554	4	FSM	ENSMUSG00000031897.10	ENSMUST00000212686.2	554	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_3	46.7784375778224	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAACAGAAGGCTGTGTCT	NA	False	NA	-8	True	AATAAA	-19	NA	106663670	106662367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663497
transcript_56529.known	chr8	-	426	4	FSM	ENSMUSG00000031897.10	ENSMUST00000212332.2	426	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	117.139043685509	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAACAGAAGGCTGTGTCTT	NA	False	NA	-7	True	AATAAA	-20	NA	106663657	106662366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106662538_106662627_106662780_106663327_106663387_106663613
transcript_56530.known	chr8	-	646	3	FSM	ENSMUSG00000031897.10	ENSMUST00000212938.2	646	3	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_1	9	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ACAAACACTTAAACAGAAGG	NA	False	NA	-16	True	AATAAA	-11	NA	106663659	106662375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106662538_106662627_106662780_106663327
transcript_56536.known	chr8	+	1860	16	FSM	ENSMUSG00000031901.13	ENSMUST00000034375.11	1860	16	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_9	22.4047613987146	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCCACCTGCTTCAACCT	NA	False	NA	12	True	AATAAA	-12	NA	106738138	106780451	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106758329_106758374_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
transcript_56541.known	chr8	+	1837	15	FSM	ENSMUSG00000031901.13	ENSMUST00000119736.8	1837	15	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_4	52.5452186216786	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACATCCTGACATAATTTTTC	NA	False	NA	33	True	AATAAA	-33	NA	106738138	106780472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983_106757076_106760354_106760416_106762609_106762658_106768455_106768522_106768657_106768729_106771429_106771517_106772532_106772702_106775284_106775407_106776948_106777099_106778433_106778522_106779637_106779712_106779923
transcript_56544.known	chr8	-	1698	10	FSM	ENSMUSG00000031898.10	ENSMUST00000034371.9	1698	10	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	8.79955105476592	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTCTGAGCCCTCGTCCTC	NA	False	NA	1	True	AATAAA	-21	NA	106706061	106700144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106700484_106701326_106701463_106701813_106701890_106702751_106702837_106703892_106704070_106704191_106704262_106704531_106704674_106704773_106704904_106705343_106705471_106705645
transcript_56547.known	chr8	+	777	4	FSM	ENSMUSG00000031901.13	ENSMUST00000141374.2	777	4	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_1	8.05536398239638	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAATTTATTTA	NA	False	NA	NA	False	NA	NA	NA	106738153	106757515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106738211_106742455_106742598_106752537_106752584_106756983
transcript_56548.known	chr8	-	2262	1	FSM	ENSMUSG00000045538.7	ENSMUST00000058579.7	2262	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTATGTCATGATTTCTTT	NA	False	NA	-9	True	AATAAA	-17	NA	106738514	106736252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106736300_106738500
transcript_56549.known	chr8	-	3536	15	FSM	ENSMUSG00000084128.11	ENSMUST00000115979.9	3536	15	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_13	4.96929346597888	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATGCTCTACATGTTAA	NA	False	NA	NA	False	TATAAA	-19	NA	106863606	106856950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106858216_106858295_106858462_106858737_106858925_106859036_106859236_106859326_106859540_106859640_106859943_106860082_106860126_106860204_106860338_106860410_106860522_106860591_106860647_106860865_106860965_106861241_106861357_106861454_106861569_106862988_106863118_106863201
transcript_56552.known	chr8	+	984	2	FSM	ENSMUSG00000086390.8	ENSMUST00000145343.2	984	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCCTCCCGATTCTCGGGA	NA	False	NA	NA	False	NA	NA	NA	106863696	106865157	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106863983_106864459
transcript_56553.known	chr8	+	2706	6	FSM	ENSMUSG00000031903.8	ENSMUST00000034377.8	2706	6	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_2	8.49941174435031	66	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCCTTGTCCTGCTCTGA	6197	False	NA	14	True	AATAAA	-20	NA	106877030	106891347	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106877246_106881499_106881657_106886794_106886914_106887212_106887312_106887715_106887941_106889456
transcript_56554.known	chr8	+	2672	11	FSM	ENSMUSG00000031904.6	ENSMUST00000212377.2	2672	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	147.708801362681	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATACAGATAAGTCACAT	1850	False	NA	NA	False	NA	NA	NA	106895506	106924477	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106895587_106905733_106905920_106906118_106906293_106916248_106916375_106918970_106919116_106919782_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
transcript_56556.known	chr8	+	3750	10	FSM	ENSMUSG00000031904.6	ENSMUST00000034378.5	3750	10	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_7	138.200159010825	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACAGTTGCCATTGGTTCT	1832	False	NA	4	True	AATAAA	-18	NA	106895488	106925338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106895587_106905733_106906293_106916248_106916375_106918970_106919116_106919782_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
transcript_56563.known	chr8	+	3200	9	FSM	ENSMUSG00000031904.6	ENSMUST00000213020.2	3200	9	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_6	138.341911129636	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGAAAAACCTCACTACTC	1850	False	NA	NA	False	NA	NA	NA	106895506	106924139	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106895587_106905733_106906293_106916248_106916375_106918970_106919907_106920124_106920229_106921052_106921150_106921993_106922144_106922484_106922669_106923175
transcript_56569.known	chr8	-	1246	5	FSM	ENSMUSG00000033106.7	ENSMUST00000035925.7	1246	5	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	2.91547594742265	230	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCCTGGTGGTTTTTCTG	NA	False	NA	-6	True	NA	NA	NA	106937565	106927348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106927782_106928862_106928984_106930962_106931173_106936996_106937264_106937350
transcript_56571.known	chr8	-	1475	1	FSM	ENSMUSG00000033106.7	ENSMUST00000212587.2	1475	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAACAAAAAAAAAAATAAA	NA	False	NA	NA	False	NA	NA	NA	106937565	106936090	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_106936100_106937600
transcript_56579.known	chr8	+	3472	18	FSM	ENSMUSG00000060098.12	ENSMUST00000071592.12	3472	18	0	0	0	0	multi-exon	FALSE	canonical	3	978	junction_13	68.9507622326015	748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTCTTTGTCTTTTAAAAC	1819	False	NA	NA	False	ATTAAA	-7	NA	106937567	106979426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479_106961593_106963425_106963668_106963853_106964035_106967817_106967946_106968742_106968879_106969926_106970011_106970433_106970482_106971288_106971379_106973694_106973857_106974980_106975056_106976939_106977101_106977828_106977926_106978110
transcript_566.known	chr1	-	1659	10	FSM	ENSMUSG00000046337.18	ENSMUST00000114981.3	1659	10	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_7	27.7328525599353	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAAACGCC	NA	False	NA	NA	False	AATACA	-27	NA	36722264	36639056	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_36639302_36639488_36639666_36639947_36640033_36647497_36647613_36671500_36671586_36674247_36674354_36683290_36683444_36698444_36698507_36699815_36700131_36721948
transcript_5660.known	chr10	-	1844	11	FSM	ENSMUSG00000064181.7	ENSMUST00000219109.2	1844	11	0	0	0	0	multi-exon	TRUE	canonical	3	251	junction_7	35.031985384788	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGTGCGTGTGTCTTTCTTA	NA	False	NA	-7	True	AATAAA	-10	NA	116786336	116742681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_116743024_116746029_116746100_116746186_116746287_116750001_116750115_116751748_116751878_116754666_116754871_116755478_116755557_116764093_116764190_116773301_116773561_116775105_116775387_116786164
transcript_56602.known	chr8	+	1094	6	FSM	ENSMUSG00000060098.12	ENSMUST00000109297.8	1094	6	0	0	0	0	multi-exon	FALSE	canonical	3	1054	junction_4	40.5186376868719	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGCATAGAAACTCATGTGC	1906	False	NA	NA	False	NA	NA	NA	106937654	106962021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_106937715_106939007_106939204_106943875_106943913_106946551_106946702_106953842_106953952_106961479
transcript_56604.known	chr8	+	2632	4	FSM	ENSMUSG00000031907.10	ENSMUST00000034382.8	2632	4	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	5.09901951359278	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGTATGGCCAAGGCTCAT	NA	False	NA	NA	False	AAGAAA	-13	NA	107141970	107152521	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_107142403_107145702_107145830_107146146_107146243_107150544
transcript_56607.known	chr8	+	4384	16	FSM	ENSMUSG00000061048.9	ENSMUST00000080797.8	4384	16	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	6.02218122167265	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTATTATATGTAAGTACAC	NA	False	NA	NA	False	AATACA	-20	NA	107237522	107283929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_107237639_107237855_107237974_107262039_107262114_107263192_107263319_107263447_107263604_107263705_107263851_107265625_107265802_107266426_107266556_107267938_107268125_107270282_107270525_107270748_107270895_107271634_107271860_107274253_107274464_107279020_107279152_107279497_107279645_107281872
transcript_56608.known	chr8	-	342	1	FSM	ENSMUSG00000060019.7	ENSMUST00000073722.7	342	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	317	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTGCTTTTGTTAAGTT	NA	False	NA	NA	False	NA	NA	NA	107299982	107299640	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_107299600_107300000
transcript_56609.known	chr8	+	4430	16	FSM	ENSMUSG00000000303.13	ENSMUST00000000312.12	4430	16	0	0	0	0	multi-exon	FALSE	canonical	3	808	junction_8	93.5918799896658	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGGCTCACTTGATTTG	5049	False	NA	26	True	ATTAAA	-18	NA	107329982	107396878	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_107330175_107330918_107331040_107375632_107375857_107380138_107380283_107380395_107380552_107383455_107383601_107384371_107384548_107384822_107384952_107386221_107386405_107387427_107387673_107388516_107388663_107390378_107390604_107390827_107391056_107392025_107392157_107392818_107392963_107395037
transcript_5661.known	chr10	-	443	1	FSM	ENSMUSG00000111966.2	ENSMUST00000219792.2	443	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGGCCAATAAAGACTGGTT	NA	False	NA	NA	False	NA	NA	NA	116809113	116808670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_116808700_116809100
transcript_56611.known	chr8	+	4409	18	FSM	ENSMUSG00000041949.7	ENSMUST00000048359.5	4409	18	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_2	14.9330686662985	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	1113	False	NA	NA	False	NA	NA	NA	107409699	107578071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_107409888_107415283_107415925_107419198_107419316_107422080_107422229_107423235_107423373_107425587_107425751_107426796_107426880_107443240_107443354_107444601_107444779_107447285_107447416_107451725_107451918_107462317_107462453_107468644_107469104_107473925_107473984_107508325_107508467_107533672_107533825_107545087_107545202_107576810
transcript_56613.known	chr8	-	2890	4	FSM	ENSMUSG00000046691.15	ENSMUST00000175940.2	2890	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	147.606082379947	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGCTGTCGCTCCATTT	NA	False	NA	-31	True	AATAAA	-13	NA	107619847	107610525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_107613159_107613551_107613670_107613932_107613989_107619764
transcript_56614.known	chr8	-	2931	4	FSM	ENSMUSG00000046691.15	ENSMUST00000177068.8	2931	4	0	0	0	0	multi-exon	FALSE	canonical	3	308	junction_2	18.5472369909914	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTCTGCTTGTTTTTTTTA	NA	False	NA	0	True	AATAAA	-44	NA	107620225	107610494	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_107613159_107613551_107613670_107613932_107613989_107620132
transcript_56615.known	chr8	-	694	4	FSM	ENSMUSG00000046691.15	ENSMUST00000176515.2	694	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	154.848312874245	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCAGCTCCTTTTCAGAAT	NA	False	NA	NA	False	NA	NA	NA	107620233	107612753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_107613159_107613551_107613684_107613932_107613989_107620132
transcript_56620.known	chr8	+	2232	17	FSM	ENSMUSG00000041438.9	ENSMUST00000047629.7	2232	17	0	0	0	0	multi-exon	TRUE	canonical	3	1046	junction_1	100.936996902771	832	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGACTAGACATTTTAAATTA	NA	False	NA	12	True	AATAAA	-17	NA	107620282	107649720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_107620345_107621222_107621384_107624691_107624884_107625073_107625159_107627477_107627568_107630864_107631077_107632756_107632929_107633021_107633114_107634836_107634934_107637573_107637639_107638857_107638981_107639979_107640137_107642787_107642895_107644213_107644310_107645251_107645438_107648803_107648915_107649496
transcript_56632.known	chr8	+	2178	11	FSM	ENSMUSG00000031913.10	ENSMUST00000034388.10	2178	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_10	19.6532440070335	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTACTGGAGTCGTCTCAT	NA	False	NA	17	True	AATAAA	-17	NA	107757853	107772387	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_107758124_107763268_107763381_107763474_107763623_107765559_107765622_107765721_107765842_107767505_107767663_107768823_107768973_107769245_107769328_107769543_107769764_107771086_107771228_107771670
transcript_56636.known	chr8	-	2954	6	FSM	ENSMUSG00000031916.18	ENSMUST00000034391.4	2954	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	47.5116827738189	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AACAAAGCTTCTACTGGTAG	NA	False	NA	NA	False	NA	NA	NA	107783316	107772926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_107773904_107775414_107775763_107776773_107776943_107778844_107779673_107780653_107780862_107782892
transcript_56637.known	chr8	-	4476	5	FSM	ENSMUSG00000031916.18	ENSMUST00000095517.12	4476	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_4	10.356157588604	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTTCTACTGGTAGCCACTT	NA	False	NA	NA	False	NA	NA	NA	107783321	107772920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_107775763_107776773_107776943_107778844_107779673_107780653_107780862_107782892
transcript_56638.known	chr8	-	1306	2	FSM	ENSMUSG00000078931.5	ENSMUST00000055316.10	1306	2	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TAAAAGAAAAAAAAAGCTCA	NA	False	NA	NA	False	NA	NA	NA	107775246	107773151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_107773904_107774692
transcript_56641.nnic	chr8	+	2029	6	NNC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	-85	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	320.893377931051	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTCTCCGTATCAACTCT	NA	False	NA	19	True	ATTAAA	-20	NA	107783423	107787563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008_107785997_107787088
transcript_56642.known	chr8	+	3036	5	FSM	ENSMUSG00000031917.13	ENSMUST00000034392.13	3036	5	0	0	0	0	multi-exon	FALSE	canonical	3	714	junction_4	51.2688989544344	940	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGTCTCCGTATCAACTCT	NA	False	NA	19	True	ATTAAA	-20	NA	107783508	107787563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_107783623_107783724_107783812_107783904_107784044_107784678_107784820_107785008
transcript_56645.nic	chr8	+	1238	4	NIC	ENSMUSG00000031917.13	novel	3036	5	NA	NA	-10	364	intron_retention	FALSE	canonical	3	714	junction_3	58.9594964549581	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTGTTATTTCATATGTG	NA	False	NA	21	True	AATAAA	-15	NA	107783498	107785662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_107783623_107783724_107784044_107784678_107784820_107785008
transcript_56650.known	chr8	+	4316	5	FSM	ENSMUSG00000031924.5	ENSMUST00000034400.5	4316	5	0	0	0	0	multi-exon	FALSE	canonical	3	1441	junction_2	30.906107810593	471	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTACGGTTGCTTTTTTTTTT	NA	False	NA	17	True	AATAAA	-28	NA	107877271	107914103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_107877506_107896442_107896572_107897022_107897053_107906045_107906075_107910209
transcript_56651.known	chr8	-	456	1	FSM	ENSMUSG00000057657.5	ENSMUST00000080443.8	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4222	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTCTCTGGGCCTTTGCT	NA	False	NA	-69	True	AAGAAA	-1	NA	107989880	107989424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_107989400_107989900
transcript_56652.known	chr8	-	1553	6	FSM	ENSMUSG00000003849.9	ENSMUST00000003947.9	1553	6	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_5	9.8264947972306	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGGTGGCGCATGCCTTT	NA	False	NA	-2	True	AATAAA	-18	NA	108129838	108114856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_108115757_108117676_108117779_108118753_108118868_108119272_108119404_108119479_108119645_108129697
transcript_56656.known	chr8	-	1658	9	FSM	ENSMUSG00000003848.15	ENSMUST00000003946.9	1658	9	0	0	0	0	multi-exon	FALSE	canonical	3	419	junction_2	34.7902195307819	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTTTTTTGTTTTATTT	NA	False	NA	-3	True	AATAAA	-14	NA	108151681	108139120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_108139816_108142737_108142883_108143625_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151369_108151503_108151597
transcript_56657.nic	chr8	-	1659	9	NIC	ENSMUSG00000003848.15	novel	1658	9	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	2	3	junction_7	161.008540146167	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTGTTTTATTTGGG	NA	False	NA	0	True	AATAAA	-17	NA	108151693	108139117	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_108139816_108142737_108142883_108143625_108143724_108144687_108144859_108144945_108145075_108145331_108145404_108148113_108148245_108151383_108151503_108151597
transcript_56662.known	chr8	+	4314	24	FSM	ENSMUSG00000031930.12	ENSMUST00000166615.3	4314	24	0	0	0	0	multi-exon	FALSE	canonical	3	576	junction_9	55.7196601685668	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGGTGGTGTCAGTGTAGCT	NA	False	NA	11	True	AATAAA	-14	NA	108162996	108285227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108209963_108210102_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
transcript_56664.known	chr8	+	2758	23	FSM	ENSMUSG00000031930.12	ENSMUST00000212205.2	2758	23	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	144.720334461373	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTACCTGTTGCAAAGCCAG	NA	False	NA	10	True	AATAAA	-21	NA	108163031	108283844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_108163074_108179610_108179696_108184074_108184223_108184511_108184634_108212177_108212275_108232938_108233067_108244532_108244744_108259831_108259922_108267255_108267431_108272075_108272131_108275100_108275183_108275660_108275790_108276091_108276168_108276412_108276485_108276678_108276768_108278908_108279069_108280600_108280735_108281064_108281206_108281612_108281734_108282045_108282151_108283092_108283190_108283343_108283417_108283518
transcript_56666.known	chr8	-	351	1	FSM	ENSMUSG00000059775.6	ENSMUST00000212102.2	351	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGCCGTTTTGTAAGGACA	NA	False	NA	NA	False	NA	NA	NA	108166196	108165845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_108165800_108166200
transcript_56667.known	chr8	-	449	1	FSM	ENSMUSG00000059775.6	ENSMUST00000077208.6	449	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11162	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAACTTTTTATCGCT	NA	False	NA	NA	False	AATAAA	-37	NA	108166211	108165762	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_108165800_108166200
transcript_56669.known	chr8	-	860	1	FSM	ENSMUSG00000039067.6	ENSMUST00000213080.2	860	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	CAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	108315090	108314230	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_108314200_108315100
transcript_5667.nic	chr10	-	2077	16	NIC	ENSMUSG00000034024.9	novel	1959	16	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	239	junction_15	561.749291647677	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTTACTGATCTGT	NA	False	NA	-11	True	AATAAA	-19	NA	116899291	116886905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899064
transcript_56670.known	chr8	-	1581	7	FSM	ENSMUSG00000039067.6	ENSMUST00000044106.6	1581	7	0	0	0	0	multi-exon	FALSE	canonical	3	2367	junction_5	170.70409745782	2874	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTCTGTGTCCTAGTGGTT	NA	False	NA	-6	True	ATTAAA	-14	NA	108315096	108307012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_108307952_108309013_108309106_108310804_108310886_108311494_108311593_108312336_108312430_108313256_108313349_108314910
transcript_56673.known	chr8	-	174	1	FSM	ENSMUSG00000110528.2	ENSMUST00000211890.2	174	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCGGAACCAGTATTTGGAAG	NA	False	NA	NA	False	AAAACA	-4	NA	110067496	110067322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_110067300_110067500
transcript_56674.known	chr8	-	4463	27	FSM	ENSMUSG00000037993.9	ENSMUST00000042601.9	4463	27	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_24	17.2223966609053	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGCATTTTAAATCTCC	NA	False	NA	-2	True	AATAAA	-19	NA	110292493	110274642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_110275116_110276405_110276528_110278194_110278291_110278699_110278826_110278988_110279124_110279221_110279378_110279721_110279877_110279976_110280186_110280779_110280893_110281275_110281384_110281544_110281662_110281751_110281863_110282271_110282413_110282651_110282838_110282988_110283176_110283505_110283644_110284829_110284943_110285275_110285384_110285550_110285713_110286169_110286326_110286717_110286795_110286969_110287089_110287199_110287348_110287931_110288040_110288580_110288769_110289075_110289416_110292122
transcript_56678.known	chr8	-	2039	9	FSM	ENSMUSG00000031730.19	ENSMUST00000123605.9	2039	9	0	0	0	0	multi-exon	FALSE	canonical	1	150	junction_2	108.396191699709	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAGAATATATTGTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	110335255	110320108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_110320764_110321251_110321412_110321547_110321702_110322278_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110334983
transcript_56679.nic	chr8	-	1932	9	NIC	ENSMUSG00000031730.19	novel	2039	9	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	1	23	junction_8	169.433615318803	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGCTAGAATATATTGTTATT	NA	False	NA	NA	False	AATAAA	-19	NA	110335336	110320108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_110320764_110321251_110321412_110321547_110321702_110322278_110322393_110322661_110322850_110328054_110328138_110329934_110330135_110332839_110333053_110335171
transcript_56685.nic	chr8	-	2506	11	NIC	ENSMUSG00000031729.7	novel	2304	10	NA	NA	-42	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_3	245.924866575139	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGTGTTGGTCAAATGAG	NA	False	NA	-13	True	AATAAA	-20	NA	110419934	110397956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_110399274_110402007_110402057_110402274_110402435_110403389_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
transcript_56687.nnic	chr8	-	2304	10	NNC	ENSMUSG00000031729.7	novel	2304	10	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	200.646178356053	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGTGTTGGTCAAATGAG	NA	False	NA	-13	True	AATAAA	-20	NA	110419934	110397956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_110399274_110402007_110402015_110403389_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
transcript_5669.known	chr10	-	1959	16	FSM	ENSMUSG00000034024.9	ENSMUST00000047672.9	1959	16	0	0	0	0	multi-exon	FALSE	canonical	3	1936	junction_8	229.468312990414	2720	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAATGTCTTACTGATCTGT	NA	False	NA	-11	True	AATAAA	-19	NA	116899719	116886905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_116887182_116888920_116889063_116889944_116890045_116890781_116890886_116891011_116891141_116891944_116892065_116893078_116893183_116893695_116893824_116894002_116894104_116896552_116896756_116897202_116897316_116897409_116897487_116897929_116898042_116898721_116898788_116898880_116898956_116899610
transcript_56690.known	chr8	-	2304	10	FSM	ENSMUSG00000031729.7	ENSMUST00000034164.6	2304	10	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_2	71.0226880807973	187	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTAGTGTTGGTCAAATGAG	NA	False	NA	-13	True	AATAAA	-20	NA	110419892	110397956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_110399274_110402007_110402057_110403389_110403483_110404117_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
transcript_56700.nnic	chr8	-	2002	7	NIC	ENSMUSG00000031729.7	novel	3633	9	NA	NA	-42	-1	combination_of_known_splicesites	FALSE	canonical	1	3	junction_1	243.988160004174	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAGTGTTGGTCAAATGA	NA	False	NA	-14	True	AATAAA	-19	NA	110419934	110397957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_110399274_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
transcript_56702.known	chr8	-	6990	7	FSM	ENSMUSG00000031729.7	ENSMUST00000212562.2	6990	7	0	0	0	0	multi-exon	FALSE	canonical	3	544	junction_1	46.2508258184531	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTCTAGTGTTGGTCAAAT	NA	False	NA	-16	True	AATAAA	-17	NA	110419879	110397959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_110404319_110405486_110405598_110406055_110406140_110408738_110408827_110409229_110409411_110410307_110410411_110419815
transcript_56706.known	chr8	-	461	4	FSM	ENSMUSG00000069895.5	ENSMUST00000212726.2	461	4	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_3	4.32049379893857	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCCAGTGACGCTTCTGAAT	NA	False	NA	NA	False	NA	NA	NA	110464371	110460147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_110460375_110461936_110461996_110462091_110462158_110464262
transcript_56708.known	chr8	+	6899	24	FSM	ENSMUSG00000031731.17	ENSMUST00000093157.13	6899	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	59.7914143712471	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAAACTTTGCTGCCTTGC	NA	False	NA	16	True	AATAAA	-18	NA	110505185	110590836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_110505595_110529578_110529783_110545549_110545675_110553225_110553368_110554869_110554967_110556230_110556308_110557244_110557254_110559348_110559445_110559821_110559903_110560099_110560199_110564374_110564431_110565550_110565665_110569984_110570126_110570956_110571012_110576252_110576376_110577672_110577763_110578331_110578460_110580173_110580279_110581297_110581440_110581614_110581742_110581977_110582086_110582204_110582366_110585430_110585530_110586725
transcript_56710.known	chr8	+	3692	23	FSM	ENSMUSG00000031731.17	ENSMUST00000034171.9	3692	23	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_1	23.6531408988355	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCGTTCCCACATTGTACTTT	NA	False	NA	NA	False	AATAAA	-20	NA	110505537	110587990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_110505595_110529578_110529783_110545549_110545675_110553225_110553368_110554869_110554967_110556230_110556308_110559348_110559445_110559821_110559903_110560099_110560199_110564374_110564431_110565550_110565665_110569984_110570126_110570956_110571012_110576252_110576376_110577672_110577763_110578331_110578460_110580173_110580279_110581297_110581440_110581614_110581742_110581977_110582086_110582204_110582366_110585430_110585530_110586725
transcript_56712.known	chr8	-	2447	3	FSM	ENSMUSG00000001672.15	ENSMUST00000051430.7	2447	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCCTTGCCTTGGATTTT	NA	False	NA	NA	False	AATAAA	-17	NA	110688835	110679542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_110681374_110686344_110686473_110688347
transcript_56713.known	chr8	-	1330	3	FSM	ENSMUSG00000001672.15	ENSMUST00000001722.14	1330	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGACCAATCAGTCTGCTG	NA	False	NA	NA	False	AGTAAA	-10	NA	110688800	110674545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_110675295_110686344_110686473_110688347
transcript_56714.known	chr8	+	1649	10	FSM	ENSMUSG00000095941.4	ENSMUST00000213641.2	1649	10	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_3	3.97523195999963	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAACTTTATGAGATATGG	NA	False	NA	-42	True	GGGGCT	-45	NA	110827838	110838593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_110828167_110835615_110835726_110835834_110835858_110836017_110836077_110836409_110836623_110836712_110836955_110837152_110837295_110837438_110837593_110837930_110838005_110838289
transcript_56717.known	chr8	+	4863	5	FSM	ENSMUSG00000044676.11	ENSMUST00000212754.2	4863	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	6.21992765231236	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTGCTGAGACTTGCTTC	951	False	NA	NA	False	AATAAA	-16	NA	110806393	110819373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_110806637_110809309_110809375_110810288_110810416_110810975_110811084_110815053
transcript_56719.nnic	chr8	-	1194	9	NNC	ENSMUSG00000003657.10	novel	1431	11	NA	NA	15090	0	at_least_one_novel_splicesite	FALSE	canonical	3	87	junction_8	57.2319840648566	46	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCACCCGTTTCTTGTCG	NA	False	NA	-12	True	AATAAA	-22	NA	110879748	110869169	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_110869833_110872283_110872356_110873932_110873987_110874246_110874287_110874674_110874731_110875145_110875224_110875987_110876045_110879261_110879343_110879655
transcript_56722.known	chr8	-	1431	11	FSM	ENSMUSG00000003657.10	ENSMUST00000003754.8	1431	11	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_9	44.1960405466372	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCACCCGTTTCTTGTCG	7616	False	NA	-12	True	AATAAA	-22	NA	110894838	110869169	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_110869833_110872283_110872356_110873932_110873987_110874246_110874287_110874674_110874731_110875145_110875224_110875987_110876045_110879261_110879343_110881284_110881375_110883551_110883629_110894675
transcript_56723.known	chr8	+	3545	2	FSM	ENSMUSG00000046441.6	ENSMUST00000056972.6	3545	2	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTTGTGTTTGTTTCA	3640	False	NA	NA	False	AATAAA	-13	NA	110944620	110951118	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_110944719_110947671
transcript_56728.known	chr8	+	3069	19	FSM	ENSMUSG00000010936.12	ENSMUST00000034190.11	3069	19	0	0	0	0	multi-exon	FALSE	canonical	3	368	junction_15	41.1869046070606	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAAGTCTGCCTGCTCCTTC	7361	False	NA	16	True	AATAAA	-20	NA	111345230	111447030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_111345626_111358661_111358813_111359080_111359249_111360084_111360148_111360917_111361026_111361703_111361814_111362008_111362116_111362966_111363102_111363512_111363666_111372389_111372451_111379863_111380009_111380243_111380310_111397657_111397815_111409123_111409257_111436949_111437125_111438224_111438344_111439379_111439460_111442058_111442210_111446438
transcript_56730.nnic	chr8	-	1749	7	NNC	ENSMUSG00000031750.16	novel	1709	7	NA	NA	-13283	0	at_least_one_novel_splicesite	TRUE	canonical	3	22	junction_6	7.54247233265651	19	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCTTGCATCTCTGATG	NA	False	NA	-23	True	ATTAAA	-16	NA	111482613	111468471	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_111469081_111469275_111469412_111474874_111475037_111475294_111475373_111476056_111476191_111481862_111482283_111482403
transcript_56732.known	chr8	-	1709	7	FSM	ENSMUSG00000031750.16	ENSMUST00000076846.11	1709	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	15.61694236683	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGCTTGCATCTCTGATG	5030	False	NA	-23	True	ATTAAA	-16	NA	111532535	111468471	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_111469081_111469275_111469412_111474874_111475037_111475294_111475373_111476056_111476191_111481862_111482283_111532365
transcript_56737.known	chr8	+	2737	19	FSM	ENSMUSG00000031753.17	ENSMUST00000034203.17	2737	19	0	0	0	0	multi-exon	TRUE	canonical	3	332	junction_8	32.668367302671	248	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCATTGTGTTGGGTCCAG	9628	False	NA	13	True	AATAAA	-18	NA	111573665	111608859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_111573842_111576499_111576583_111577967_111578083_111578917_111579093_111580301_111580496_111584568_111584675_111585168_111585327_111586517_111586577_111589882_111590017_111592608_111592728_111593192_111593360_111594833_111595000_111600777_111600841_111605637_111605755_111606264_111606358_111607226_111607311_111607506_111607609_111608002_111608132_111608362
transcript_56746.known	chr8	-	1409	1	FSM	ENSMUSG00000033732.11	ENSMUST00000212843.2	1409	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAAAAGGCACGTTTGTT	NA	False	NA	NA	False	NA	NA	NA	111573359	111571950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_111572000_111573400
transcript_56749.known	chr8	+	4396	7	FSM	ENSMUSG00000031749.13	ENSMUST00000034197.5	4396	7	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_2	8.28653526310404	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAACCAAA	3037	False	NA	NA	False	ACTAAA	-30	NA	111646553	111699112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_111646738_111683389_111684683_111688800_111688995_111694048_111694229_111695819_111695866_111696175_111696296_111696733
transcript_56751.known	chr8	-	2547	12	FSM	ENSMUSG00000015023.8	ENSMUST00000040416.8	2547	12	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_8	46.4642402265948	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATGTTTGTGTACACTT	7686	False	NA	-28	True	ATTAAA	-10	NA	111724432	111701627	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_111702723_111703060_111703253_111703599_111703763_111705099_111705338_111705667_111705846_111707184_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111724298
transcript_56755.known	chr8	-	731	7	FSM	ENSMUSG00000015023.8	ENSMUST00000173183.2	731	7	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_3	37.1786228900426	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACAATGGAATGTTAAAGT	7716	False	NA	NA	False	NA	NA	NA	111724402	111707104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_111707300_111707622_111707726_111710212_111710306_111716105_111716242_111717108_111717160_111719688_111719738_111724298
transcript_56756.known	chr8	-	6612	12	FSM	ENSMUSG00000033658.17	ENSMUST00000040241.15	6612	12	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_11	90.8713558047041	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATGGGTATTTTGTCTGC	NA	False	NA	-5	True	AATAAA	-17	NA	111754396	111729819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111754229
transcript_56757.known	chr8	-	3104	12	FSM	ENSMUSG00000033658.17	ENSMUST00000065784.6	3104	12	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_11	90.7354705715175	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATACTGTGGATCAAACT	NA	False	NA	NA	False	AATAAA	-12	NA	111758383	111733290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_111734944_111735281_111735474_111735812_111735976_111737352_111737591_111737916_111738095_111739385_111739501_111742196_111742300_111747260_111747354_111747591_111747728_111749032_111749087_111750597_111750647_111758253
transcript_56759.known	chr8	+	5750	21	FSM	ENSMUSG00000031960.15	ENSMUST00000034441.8	5750	21	0	0	0	0	multi-exon	FALSE	canonical	2	1913	junction_1	386.82599124154	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTTGAGTCTGTGTTT	NA	False	NA	70	True	NA	NA	NA	111760533	111784296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_111760896_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
transcript_56760.nic	chr8	+	3327	21	NIC	ENSMUSG00000031960.15	novel	5750	21	NA	NA	-5	-2095	combination_of_known_junctions	FALSE	canonical	2	137	junction_1	723.09724622626	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGTGATGTCATGCGCTC	NA	False	NA	16	True	AATAAA	-18	NA	111760542	111782201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_111760577_111763540_111763706_111766763_111766953_111767228_111767375_111768109_111768302_111768872_111769018_111769294_111769441_111769864_111769974_111770274_111770426_111771509_111771635_111772158_111772304_111773562_111773742_111774543_111774658_111776330_111776538_111776976_111777162_111779044_111779154_111779822_111779937_111780520_111780641_111780756_111780844_111781140_111781255_111781650
transcript_56768.known	chr8	-	4443	13	FSM	ENSMUSG00000033596.6	ENSMUST00000038739.5	4443	13	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_9	43.0880074833925	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCAGTGTCTTCCGCCTG	5496	False	NA	-9	True	AATAAA	-17	NA	112026854	111997575	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_111999796_112000442_112000655_112002851_112003067_112004826_112005004_112006517_112006669_112009148_112009378_112009906_112010022_112014689_112014782_112014860_112015044_112017502_112017571_112020622_112020808_112023766_112024275_112026766
transcript_56770.known	chr8	-	4896	27	FSM	ENSMUSG00000031959.16	ENSMUST00000034437.8	4896	27	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_9	16.2917647181985	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTACTTTGTGTGTGTAAAT	NA	False	NA	NA	False	GATAAA	-25	NA	112248702	112175650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_112177712_112185242_112185386_112185554_112185682_112187214_112187288_112187393_112187545_112188787_112188901_112192420_112192503_112193420_112193555_112199261_112199319_112202675_112202830_112205939_112206010_112207074_112207232_112207387_112207484_112208491_112208657_112211721_112211847_112211969_112212103_112213547_112213628_112216923_112217081_112219326_112219405_112220879_112220997_112223438_112223528_112225203_112225242_112227668_112227750_112229113_112229200_112230966_112231103_112232523_112232574_112248559
transcript_56771.known	chr8	-	5083	26	FSM	ENSMUSG00000031959.16	ENSMUST00000038193.15	5083	26	0	0	0	0	multi-exon	TRUE	canonical	3	54	junction_4	5.67718239974725	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACAATCGTGTACTAACACA	NA	False	NA	-19	True	AGTAAA	-16	NA	112248724	112175428	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_112177712_112185242_112185386_112185554_112185682_112187214_112187288_112187393_112187545_112188787_112188901_112192420_112192503_112193420_112193555_112202675_112202830_112205939_112206010_112207074_112207232_112207387_112207484_112208491_112208657_112211721_112211847_112211969_112212103_112213547_112213628_112216923_112217081_112219326_112219405_112220879_112220997_112223438_112223528_112225203_112225242_112227668_112227750_112229113_112229200_112230966_112231103_112232523_112232574_112248559
transcript_56774.known	chr8	+	1811	4	FSM	ENSMUSG00000055835.11	ENSMUST00000077791.8	1811	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_2	17.3076733143296	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGAGTGTTTTTGGCTTTTT	NA	False	NA	13	True	AATAGA	-20	NA	112370137	112397643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_112370245_112385017_112385074_112392709_112392837_112396122
transcript_56776.known	chr8	+	1409	4	FSM	ENSMUSG00000055835.11	ENSMUST00000211926.2	1409	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	24.1430919496424	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAATTAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	112370168	112397314	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_112370245_112385017_112385074_112392751_112392837_112396122
transcript_56778.known	chr8	-	3116	7	FSM	ENSMUSG00000031955.11	ENSMUST00000212349.2	3116	7	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	13.2591687354659	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGGAGCCTACAGAAATGC	NA	False	NA	-5	True	AATAAA	-14	NA	112458768	112437108	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_112438027_112439232_112439323_112439970_112441069_112441914_112442032_112442246_112442409_112447330_112447964_112458670
transcript_56781.known	chr8	-	1178	7	FSM	ENSMUSG00000031954.7	ENSMUST00000034432.7	1178	7	0	0	0	0	multi-exon	FALSE	canonical	3	1827	junction_5	79.8013157786261	1136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGAGGTTGGTGAGAGTAA	NA	False	NA	-23	True	AATAAA	-15	NA	112580923	112495122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_112495420_112505882_112506042_112557501_112557622_112566989_112567118_112568414_112568623_112571725_112571844_112580775
transcript_56788.known	chr8	-	2984	7	FSM	ENSMUSG00000031951.9	ENSMUST00000034429.9	2984	7	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_1	6.79256129077161	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTTTCCCTTGGCTTCTGAA	NA	False	NA	-4	True	ATTAAA	-15	NA	112660513	112638642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_112640742_112641120_112641227_112641888_112641971_112644922_112645067_112645459_112645589_112659991_112660162_112660259
transcript_56792.known	chr8	+	1677	4	FSM	ENSMUSG00000031950.8	ENSMUST00000034428.8	1677	4	0	0	0	0	multi-exon	FALSE	canonical	3	2738	junction_1	80.3838015744189	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAATAAAACATGTACT	NA	False	NA	NA	False	NA	NA	NA	112667334	112680244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_112667485_112667791_112667848_112669133_112669307_112678946
transcript_56797.known	chr8	-	3159	10	FSM	ENSMUSG00000031949.18	ENSMUST00000034427.12	3159	10	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	12.5521135891752	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAGTAGTAACATTTTTTAAT	NA	False	NA	-10	True	ATTAAA	-5	NA	112718934	112693539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_112695177_112698736_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717045_112718812
transcript_56801.known	chr8	-	2762	9	FSM	ENSMUSG00000031949.18	ENSMUST00000139820.8	2762	9	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_8	9.81070843517429	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTAAGGGTGACTTTTTTG	NA	False	NA	NA	False	NA	NA	NA	112718934	112697496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717045_112718812
transcript_56802.nnic	chr8	-	2050	9	NNC	ENSMUSG00000031949.18	novel	2762	9	NA	NA	1	2	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_8	15.189943219117	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGCATAGTCTCTGTCCAC	NA	False	NA	NA	False	AATAAA	-24	NA	112718933	112698182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_112698824_112704670_112704771_112705930_112706077_112708793_112709398_112713753_112713885_112714454_112714510_112716482_112716552_112716836_112717020_112718812
transcript_56806.nnic	chr8	-	334	2	NNC	ENSMUSG00000031949.18	novel	3159	10	NA	NA	10	-20231	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAACAGGATTCTGGGATTC	NA	False	NA	-1	True	AATAAA	-23	NA	112718924	112718415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_112718638_112718812
transcript_56808.known	chr8	-	2189	16	FSM	ENSMUSG00000031948.15	ENSMUST00000164470.3	2189	16	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_15	556.875793053432	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737898	112720074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112735113_112735172_112737841
transcript_56812.known	chr8	-	2131	15	FSM	ENSMUSG00000031948.15	ENSMUST00000093120.13	2131	15	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_14	463.92143951408	113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737898	112720074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112734838_112735019_112737841
transcript_56814.known	chr8	-	2008	14	FSM	ENSMUSG00000031948.15	ENSMUST00000034426.14	2008	14	0	0	0	0	multi-exon	FALSE	canonical	3	1149	junction_10	189.523538373557	477	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCATGCAGTGTTACTTTTT	NA	False	NA	-4	True	AATAAA	-16	NA	112737955	112720074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_112720339_112721495_112721640_112723091_112723219_112724207_112724294_112724921_112725008_112725153_112725328_112725431_112725595_112726701_112726822_112728115_112728242_112728332_112728520_112729142_112729237_112729906_112730073_112732263_112732421_112737841
transcript_56820.known	chr8	+	3560	3	FSM	ENSMUSG00000033430.11	ENSMUST00000052138.11	3560	3	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_1	1.5	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTACTGTCTTAAATAAAT	NA	False	NA	NA	False	NA	NA	NA	112738029	112747160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_112738775_112741968_112742094_112744470
transcript_56821.known	chr8	+	2139	1	FSM	ENSMUSG00000033430.11	ENSMUST00000212732.2	2139	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCCTCGTGTCCTCATT	NA	False	NA	NA	False	NA	NA	NA	112738033	112740172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_112738000_112740200
transcript_56822.known	chr8	+	3543	4	FSM	ENSMUSG00000031767.14	ENSMUST00000073521.12	3543	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_3	2.05480466765633	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGGAGGTCTGTACCTG	NA	False	NA	NA	False	NA	NA	NA	114860296	114881479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_114860441_114863077_114863232_114874634_114874794_114878393
transcript_56823.known	chr8	+	707	3	FSM	ENSMUSG00000031767.14	ENSMUST00000134593.2	707	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTTTAATGTCATTCAT	NA	False	NA	NA	False	ACTAAA	-29	NA	114860381	114875128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_114860441_114863077_114863232_114874634
transcript_56825.known	chr8	+	935	3	FSM	ENSMUSG00000031767.14	ENSMUST00000066514.13	935	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATATGGCTTGCAATATTC	NA	False	NA	NA	False	NA	NA	NA	114860313	114879042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_114860441_114874634_114874794_114878393
transcript_56826.known	chr8	+	1715	9	FSM	ENSMUSG00000004637.16	ENSMUST00000160862.8	1715	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	40.6294228361664	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	115166434	115445419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115406526_115406616_115432940_115433127_115438726_115438992_115444837
transcript_56827.known	chr8	+	1771	9	FSM	ENSMUSG00000004637.16	ENSMUST00000109108.9	1771	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	40.6294228361664	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAAAGGAAAGTGGGTGA	NA	False	NA	NA	False	AATAAA	-19	NA	115166434	115601978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115406526_115406616_115432940_115433127_115438726_115438992_115601340
transcript_56828.nnic	chr8	+	1113	6	NNC	ENSMUSG00000004637.16	novel	2244	9	NA	NA	14	35526	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	49.0363130751079	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTGAGTCAGTTTCTCAAA	NA	False	NA	NA	False	AATGAA	-13	NA	115166408	115276554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115276060
transcript_56829.nic	chr8	+	683	4	ISM	ENSMUSG00000004637.16	ENSMUST00000160005.2	3781	5	-33	5309	14	-5309	5prime_fragment	FALSE	canonical	3	123	junction_1	3.39934634239519	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCAGTGTTACAGTGTGAG	NA	False	NA	NA	False	ATTAAA	-18	NA	115166408	115175249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899
transcript_56830.known	chr8	+	2244	9	FSM	ENSMUSG00000004637.16	ENSMUST00000004756.14	2244	9	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_8	27.9013328534678	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTGTCTGAAGTGTAT	NA	False	NA	12	True	AATAAA	-15	NA	115166394	116079447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_115166619_115171207_115171273_115172079_115172138_115174899_115175079_115215637_115215745_115406526_115406616_115432940_115433127_115438726_115438992_116078376
transcript_56831.known	chr8	-	437	1	FSM	ENSMUSG00000110620.2	ENSMUST00000212988.2	437	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCATCCAAATGTGAGG	9347	False	NA	NA	False	NA	NA	NA	116698810	116698373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_116698400_116698800
transcript_56834.nnic	chr8	-	2317	7	NNC	ENSMUSG00000031758.11	novel	2411	7	NA	NA	59771	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_6	23.3571307218065	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACTAGGAAATTTTTTTC	NA	False	NA	65	True	NA	NA	NA	117399959	117301138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117399859
transcript_56835.known	chr8	-	2411	7	FSM	ENSMUSG00000031758.11	ENSMUST00000109102.4	2411	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	26.9670580935745	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTACTAGGAAATTTTTTTC	1769	False	NA	65	True	NA	NA	NA	117459730	117301138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117459536
transcript_56836.nnic	chr8	-	2229	7	NNC	ENSMUSG00000031758.11	novel	2411	7	NA	NA	59771	-88	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_6	23.3571307218065	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGTGTAAGTGGAAATTCTGA	NA	False	NA	-23	True	AATATA	-15	NA	117399959	117301226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_117302027_117305906_117306051_117309745_117309957_117315988_117316162_117321700_117321919_117350522_117351106_117399859
transcript_56843.known	chr8	-	876	4	FSM	ENSMUSG00000014633.16	ENSMUST00000131616.8	876	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	157.584545209512	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TGAAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	117648161	117616017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_117616599_117620826_117620899_117637822_117637974_117648089
transcript_56844.known	chr8	-	1459	4	FSM	ENSMUSG00000014633.16	ENSMUST00000148235.8	1459	4	0	0	0	0	multi-exon	FALSE	canonical	3	303	junction_2	17.3076733143296	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAGTTTGCAGAGTGGCTT	NA	False	NA	NA	False	AATAAA	-32	NA	117648194	117615423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_117616599_117620826_117620899_117637866_117637974_117648089
transcript_56847.known	chr8	-	413	3	FSM	ENSMUSG00000014633.16	ENSMUST00000134356.2	413	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	154	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACGCGCTGTGCCAGGGAG	NA	False	NA	-102	True	NA	NA	NA	117648185	117616353	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_117616599_117620826_117620899_117648089
transcript_56848.known	chr8	-	394	3	FSM	ENSMUSG00000014633.16	ENSMUST00000128304.2	394	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	172.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGCTGAACTTGAGTGCCA	NA	False	NA	-119	True	NA	NA	NA	117648104	117616370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_117616599_117637822_117637974_117648089
transcript_56849.known	chr8	-	523	3	FSM	ENSMUSG00000014633.16	ENSMUST00000078589.7	523	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	157.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCACTGGACAGCGTGGGC	NA	False	NA	-20	True	NA	NA	NA	117648178	117616271	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_117616599_117637866_117637974_117648089
transcript_56851.known	chr8	+	1768	12	FSM	ENSMUSG00000031756.6	ENSMUST00000034205.5	1768	12	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	41.3065540194129	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTATCAGTTCCTTTGGATG	NA	False	NA	8	True	AATAAA	-16	NA	117648478	117668242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_117648523_117649066_117649181_117652820_117653002_117655274_117655321_117657816_117657877_117658332_117658410_117660025_117660203_117661433_117661536_117662932_117662991_117663900_117664014_117667182_117667310_117667573
transcript_56864.known	chr8	-	1482	3	FSM	ENSMUSG00000031847.9	ENSMUST00000213068.2	1482	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_2	1.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTGCCTGAAACTCATTT	8525	False	NA	NA	False	AATATA	-16	NA	117705698	117697846	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_117698896_117700190_117700439_117705513
transcript_56871.known	chr8	-	1443	5	FSM	ENSMUSG00000034424.6	ENSMUST00000040484.6	1443	5	0	0	0	0	multi-exon	FALSE	canonical	3	1952	junction_3	87.9982244139051	1573	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGTCTGGTGTGGTGGTGCA	NA	False	NA	NA	False	NA	NA	NA	117720276	117708548	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_117709466_117710546_117710679_117714051_117714116_117715862_117715943_117720026
transcript_56872.nnic	chr8	-	1185	4	NIC	ENSMUSG00000034424.6	novel	1443	5	NA	NA	16	-162	combination_of_known_splicesites	FALSE	canonical	3	83	junction_3	974.020647739165	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGATTGTGATTTTTATTT	NA	False	NA	-9	True	AATAAA	-16	NA	117720260	117708710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_117709466_117710546_117710679_117714051_117714116_117720026
transcript_56873.nic	chr8	-	1887	9	ISM	ENSMUSG00000034416.19	ENSMUST00000109093.9	7389	43	65306	-203	6952	203	3prime_fragment	FALSE	canonical	3	6	junction_4	8.3132048573339	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAGAACATTCTCTACG	4375	False	NA	NA	False	AATAAA	-3	NA	117743882	117722214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_117722580_117724274_117724407_117724814_117724917_117726511_117726723_117736308_117736470_117738236_117738365_117740602_117740737_117741601_117741930_117743556
transcript_56875.nic	chr8	-	1995	5	ISM	ENSMUSG00000034416.19	ENSMUST00000109093.9	7389	43	53606	22962	0	4909	internal_fragment	FALSE	canonical	3	6	junction_4	1.92028643696715	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACCATGAGCACAGGATCAT	NA	False	NA	NA	False	NA	NA	NA	117755582	117745379	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_117746282_117747778_117747873_117748556_117748762_117750601_117750831_117755017
transcript_56879.nic	chr8	+	1903	12	ISM	ENSMUSG00000034330.11	ENSMUST00000081232.9	4298	33	102740	0	102740	0	3prime_fragment	FALSE	canonical	3	117	junction_1	25.4749917882532	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTTCTGTACCTGATCTGT	NA	False	NA	11	True	AATAAA	-23	NA	118327769	118361881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
transcript_56880.known	chr8	+	4298	33	FSM	ENSMUSG00000034330.11	ENSMUST00000081232.9	4298	33	0	0	0	0	multi-exon	TRUE	canonical	3	77	junction_7	32.3080872228611	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGTTCTGTACCTGATCTGT	NA	False	NA	11	True	AATAAA	-23	NA	118225029	118361881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_118225169_118230873_118231113_118282713_118282858_118284041_118284136_118284807_118284856_118293540_118293626_118294902_118294987_118300079_118300124_118300655_118300729_118304561_118304664_118306514_118306634_118308395_118308482_118310221_118310343_118311902_118312072_118313199_118313305_118316002_118316093_118316581_118316758_118316857_118317059_118319364_118319485_118323000_118323182_118325160_118325233_118327866_118327977_118330560_118330658_118331929_118331997_118333809_118333968_118335876_118335980_118337471_118337682_118339642_118339789_118340906_118341022_118341953_118342122_118347913_118348003_118361012_118361198_118361523
transcript_56881.known	chr8	+	1320	5	FSM	ENSMUSG00000031844.9	ENSMUST00000034304.9	1320	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.69258240356725	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTCTTATTTTGAAATGT	NA	False	NA	NA	False	ATTAAA	-16	NA	118428642	118485766	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_118429003_118461232_118461446_118469070_118469257_118479924_118480063_118485343
transcript_56883.known	chr8	-	1068	5	FSM	ENSMUSG00000031843.3	ENSMUST00000034303.3	1068	5	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_1	47.4572175754121	676	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTTGAAGTAATTTTAG	NA	False	NA	-12	True	AATAAA	-22	NA	118528682	118518383	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_118519058_118519417_118519516_118521319_118521411_118525782_118525896_118528590
transcript_5689.known	chr10	-	6420	10	FSM	ENSMUSG00000020170.5	ENSMUST00000020381.5	6420	10	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_1	21.0226215606891	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACGTAAAGTTTTACTGTAT	NA	False	NA	-5	True	AATAAA	-28	NA	116984415	116905331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_116910785_116912715_116912880_116913416_116913576_116914664_116914852_116916926_116917019_116920936_116921029_116935847_116935873_116936530_116936574_116938017_116938104_116984296
transcript_56890.known	chr8	-	887	3	FSM	ENSMUSG00000031843.3	ENSMUST00000211818.2	887	3	0	0	0	0	multi-exon	FALSE	canonical	3	698	junction_1	49.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAACTTCAGCTTGTGCCAGA	NA	False	NA	NA	False	NA	NA	NA	118528666	118520712	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_118521411_118525782_118525896_118528590
transcript_56892.known	chr8	+	638	5	FSM	ENSMUSG00000031839.8	ENSMUST00000212468.2	638	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	859.671594273069	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTACTCGTGATCACGTGA	NA	False	NA	109	True	GATAAA	-7	NA	120071260	120075082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_120071360_120071674_120071742_120072351_120072473_120073563_120073607_120074774
transcript_56893.known	chr8	+	1208	4	FSM	ENSMUSG00000031839.8	ENSMUST00000034300.8	1208	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	885.438121308692	806	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGAAGAATGGTGTGGTC	NA	False	NA	NA	False	AATAAA	-18	NA	120071226	120075661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_120071360_120071674_120071742_120072351_120072473_120074774
transcript_56896.known	chr8	+	1976	13	FSM	ENSMUSG00000031837.15	ENSMUST00000098363.10	1976	13	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	4.71625439894367	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTGTCTCTGTCCCTTT	NA	False	NA	11	True	AATAAA	-19	NA	120173457	120199379	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_120174004_120176820_120176846_120178820_120178930_120180939_120180966_120181097_120181196_120189299_120189437_120191640_120191760_120191891_120191972_120194329_120194384_120195007_120195121_120197646_120197725_120198478_120198571_120198880
transcript_56897.nic	chr8	+	1307	9	ISM	ENSMUSG00000031837.15	ENSMUST00000098363.10	1976	13	7603	0	1890	0	3prime_fragment	FALSE	canonical	3	52	junction_2	2.75850956133924	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCGTGTCTCTGTCCCTTT	NA	False	NA	11	True	AATAAA	-19	NA	120181060	120199379	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_120181196_120189299_120189437_120191640_120191760_120191891_120191972_120194329_120194384_120195007_120195121_120197646_120197725_120198478_120198571_120198880
transcript_56899.known	chr8	-	4195	23	FSM	ENSMUSG00000031835.17	ENSMUST00000081381.6	4195	23	0	0	0	0	multi-exon	FALSE	canonical	3	394	junction_22	51.0282088571954	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAAGCTGGCATGTGTCGT	8141	False	NA	-7	True	AATAAA	-14	NA	120285474	120234894	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_120235715_120236992_120237124_120240612_120240740_120242316_120242449_120244877_120245019_120247010_120247089_120247736_120247862_120248493_120248651_120249217_120249334_120251165_120251339_120252106_120252296_120255662_120255808_120257787_120257950_120260059_120260212_120262013_120262117_120264865_120264934_120265582_120265700_120268323_120268434_120268813_120268925_120269463_120269668_120272722_120272981_120274138_120274625_120285384
transcript_5690.known	chr10	-	1327	7	FSM	ENSMUSG00000020171.9	ENSMUST00000020382.8	1327	7	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_4	39.2074256005444	328	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGTGTCTGCCTCTTGTG	3371	False	NA	-14	True	AATAAA	-14	NA	117060412	117051126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_117051742_117053116_117053205_117053333_117053427_117056237_117056333_117056436_117056504_117058078_117058199_117060163
transcript_56901.known	chr8	-	3141	5	FSM	ENSMUSG00000034189.6	ENSMUST00000036049.6	3141	5	0	0	0	0	multi-exon	TRUE	canonical	3	107	junction_4	18.9274932307477	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGTCCCGCCACCAGAGGGT	NA	False	NA	-10	True	AATAAA	-19	NA	120301922	120288727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_120290877_120292382_120292611_120292767_120293214_120294504_120294731_120301830
transcript_56902.known	chr8	-	3236	15	FSM	ENSMUSG00000031832.16	ENSMUST00000093099.13	3236	15	0	0	0	0	multi-exon	FALSE	canonical	1	17	junction_9	12.1866856085832	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGGTGTGTAAAGCCCAC	1064	False	NA	-2	True	NA	NA	NA	120331961	120324713	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_120326243_120326319_120326458_120326554_120326730_120327172_120327311_120327399_120327536_120327689_120327762_120327849_120327968_120328054_120328172_120328280_120328520_120329569_120329644_120329728_120329819_120329888_120329987_120330119_120330205_120330978_120331118_120331873
transcript_56903.known	chr8	+	2821	12	FSM	ENSMUSG00000031831.7	ENSMUST00000093100.3	2821	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.65144564768954	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCATTGCTTCAGCCTA	NA	False	NA	NA	False	AATACA	-14	NA	120301973	120325193	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_120302207_120304069_120304206_120305966_120306059_120309247_120309470_120309585_120309753_120314916_120315039_120317317_120317476_120318439_120318698_120321571_120321664_120322682_120322743_120323425_120323823_120324309
transcript_56907.nic	chr8	-	1462	4	NIC	ENSMUSG00000031832.16	novel	3309	15	NA	NA	-18	-2488	intron_retention	FALSE	canonical	3	55	junction_1	6.16441400296898	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAACCTTAGGC	1046	False	NA	NA	False	AATAAA	-29	NA	120331979	120328854	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_120329987_120330119_120330205_120330978_120331118_120331873
transcript_56910.known	chr8	-	456	1	FSM	ENSMUSG00000081378.2	ENSMUST00000117927.2	456	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGCTGTTGTGTGCACAAGC	3661	False	NA	NA	False	NA	NA	NA	120329364	120328908	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_120328900_120329400
transcript_56911.nnic	chr8	+	2005	10	NNC	ENSMUSG00000024266.9	novel	1926	10	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_8	9.71571210608852	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGTCTGCGTGTTGGGA	4239	False	NA	7	True	AATAAA	-12	NA	120339443	120343663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_120339872_120340833_120340975_120341482_120341531_120341641_120341768_120341850_120342002_120342078_120342247_120342349_120342580_120342671_120342916_120343110_120343269_120343352
transcript_56912.known	chr8	+	1926	10	FSM	ENSMUSG00000024266.9	ENSMUST00000098361.4	1926	10	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_8	9.71571210608852	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGGTCTGCGTGTTGGGA	4281	False	NA	7	True	AATAAA	-12	NA	120339485	120343663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_120339872_120340833_120340975_120341482_120341531_120341641_120341768_120341850_120342002_120342078_120342247_120342349_120342580_120342671_120342916_120343147_120343269_120343352
transcript_56915.known	chr8	-	3085	8	FSM	ENSMUSG00000034105.10	ENSMUST00000049156.7	3085	8	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_5	4.74664220738176	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCATTGGTAGCAGGCTTGG	NA	False	NA	NA	False	AATAAA	-20	NA	120505155	120486814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_120488570_120489030_120489211_120490674_120490794_120494804_120495234_120497979_120498125_120499112_120499344_120500010_120500180_120505098
transcript_56916.known	chr8	-	1596	4	FSM	ENSMUSG00000031827.14	ENSMUST00000034285.14	1596	4	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	12.9185482500507	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGAGTTGGGTTGTCT	NA	False	NA	NA	False	AGTAAA	-14	NA	120567283	120535960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_120537095_120549392_120549551_120566880_120566964_120567062
transcript_56917.known	chr8	+	2181	5	FSM	ENSMUSG00000031828.10	ENSMUST00000034287.10	2181	5	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	6.86931583201704	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCTTGTTTGAATACTTACA	NA	False	NA	NA	False	ATTAAA	-24	NA	120589010	120603734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_120589187_120591741_120591819_120596360_120597432_120601113_120601272_120603035
transcript_56918.known	chr8	+	1354	3	FSM	ENSMUSG00000031828.10	ENSMUST00000212636.2	1354	3	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTCTTGAGGCCTCTTTG	NA	False	NA	NA	False	ATTAAA	-14	NA	120589004	120597455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_120589187_120591741_120591819_120596360
transcript_56919.known	chr8	+	3726	14	FSM	ENSMUSG00000031826.21	ENSMUST00000144458.8	3726	14	0	0	0	0	multi-exon	FALSE	canonical	3	816	junction_3	215.032734538435	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAAGCTGTGTTTCTTGGT	8373	False	NA	34	True	AATAAA	-16	NA	120637098	120684294	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
transcript_56921.known	chr8	+	3274	14	FSM	ENSMUSG00000031826.21	ENSMUST00000108988.9	3274	14	0	0	0	0	multi-exon	FALSE	canonical	3	740	junction_3	231.479471146212	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTTTCTTGGTGTGCT	8827	False	NA	39	True	AATAAA	-21	NA	120637552	120684299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851_120668878_120673813_120673906_120674439_120674550_120675156_120675213_120675417_120675522_120677097_120677198_120678659_120678838_120679918_120680085_120681527_120681673_120682936_120683003_120683321
transcript_56923.nic	chr8	+	2588	4	ISM	ENSMUSG00000031826.21	ENSMUST00000143615.8	2129	11	-53	9217	-34	2006	5prime_fragment	FALSE	canonical	3	816	junction_3	406.879452527267	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTTTTGCCTGCATGT	8793	False	NA	NA	False	ATTAAA	-17	NA	120637518	120670149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667848
transcript_56925.nic	chr8	+	2585	4	ISM	ENSMUSG00000031826.21	ENSMUST00000108988.9	3274	14	-34	14150	-34	2006	5prime_fragment	FALSE	canonical	3	740	junction_3	442.529848334174	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTTTTGCCTGCATGT	8793	False	NA	NA	False	ATTAAA	-17	NA	120637518	120670149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_120637679_120658587_120658657_120663269_120663328_120667851
transcript_56938.known	chr8	+	476	5	FSM	ENSMUSG00000031818.13	ENSMUST00000181795.2	476	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4437.1422390994	1798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGGACATGAAGGCCAACCC	NA	False	NA	NA	False	NA	NA	NA	121395046	121400771	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_121395091_121396047_121396122_121399467_121399632_121399959_121400092_121400709
transcript_56941.known	chr8	+	765	5	FSM	ENSMUSG00000031818.13	ENSMUST00000181586.8	765	5	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_1	3735.25865904893	311	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTGTGGTTCATTCTT	NA	False	NA	28	True	AATAAA	-17	NA	121394960	121400946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_121395115_121396047_121396122_121399463_121399632_121399959_121400092_121400709
transcript_56946.known	chr8	-	450	5	FSM	ENSMUSG00000031819.14	ENSMUST00000181111.8	450	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	520.838266643303	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCGGAAGGGAAGCTGCAAGT	NA	False	NA	NA	False	NA	NA	NA	121394502	121384762	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_121384988_121385290_121385362_121385743_121385814_121387522_121387600_121394495
transcript_56949.known	chr8	-	4942	5	FSM	ENSMUSG00000031819.14	ENSMUST00000034277.14	4942	5	0	0	0	0	multi-exon	FALSE	canonical	3	1135	junction_3	55.4301362076623	515	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTCCTCTCTGTGTTCATC	NA	False	NA	0	True	AATAAA	-23	NA	121394860	121380652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_121384988_121385266_121385362_121385743_121385814_121387522_121387600_121394495
transcript_56950.known	chr8	-	470	5	FSM	ENSMUSG00000031819.14	ENSMUST00000181836.2	470	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_3	531.102332418151	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACATTTATAGAGGAATAGTA	NA	False	NA	NA	False	NA	NA	NA	121394575	121384788	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_121384988_121385266_121385362_121385743_121385814_121387573_121387600_121394495
transcript_56954.known	chr8	-	844	4	FSM	ENSMUSG00000043687.17	ENSMUST00000123927.9	844	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	5.09901951359278	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCGGGTCCTGGTTTTTG	NA	False	NA	-1	True	AATAAA	-13	NA	121361231	121335340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_121335770_121337932_121338077_121355210_121355257_121361006
transcript_56955.known	chr8	-	758	4	FSM	ENSMUSG00000097919.2	ENSMUST00000181333.2	758	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	27.6043474836845	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCCCGGCTTGGTGAAGA	NA	False	NA	NA	False	NA	NA	NA	121394818	121335524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_121335770_121337932_121338077_121355210_121355257_121394495
transcript_56958.known	chr8	+	2847	9	FSM	ENSMUSG00000041515.11	ENSMUST00000047737.10	2847	9	0	0	0	0	multi-exon	TRUE	canonical	3	23	junction_1	7.56637297521078	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTAATGTTTGTTTCTTTTTT	NA	False	NA	18	True	ATTAAA	-22	NA	121463096	121483433	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_121463149_121466555_121466731_121470444_121470629_121472358_121472448_121473941_121474048_121475037_121475086_121480091_121480473_121481126_121481243_121481737
transcript_56961.nnic	chr8	+	1188	7	NNC	ENSMUSG00000041515.11	novel	764	4	NA	NA	-679	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	15.0489940601431	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCACTAATGGCTGGCCTTTC	NA	False	NA	NA	False	ATTAAA	-29	NA	121471539	121482143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_121471582_121472358_121472448_121473941_121474048_121475037_121475086_121480091_121480473_121481126_121481243_121481737
transcript_56966.known	chr8	-	1366	10	FSM	ENSMUSG00000031816.16	ENSMUST00000139782.8	1366	10	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_9	24.8282992660481	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGCTTGTATGTTTGTG	NA	False	NA	-11	True	NA	NA	NA	121835049	121824295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_121824665_121825446_121825511_121825737_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121834932
transcript_56967.known	chr8	-	1060	10	FSM	ENSMUSG00000031816.16	ENSMUST00000133037.8	1060	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	18.6494629717802	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGACGCAGGCTCAGGCTGT	NA	False	NA	NA	False	NA	NA	NA	121835131	121824589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_121824665_121825446_121825511_121825737_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121835026
transcript_5697.known	chr10	-	2227	11	FSM	ENSMUSG00000055531.13	ENSMUST00000176670.8	2227	11	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_6	215.998518513438	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGATGTGTAAAGCTGTTCA	4515	False	NA	-12	True	AATAAA	-13	NA	117212834	117184946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197678_117197790_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
transcript_56972.nic	chr8	-	1526	9	NIC	ENSMUSG00000031816.16	novel	1366	10	NA	NA	6	0	intron_retention	FALSE	canonical	3	48	junction_6	14.260412862186	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTGCTTGTATGTTTGTG	NA	False	NA	-11	True	NA	NA	NA	121835076	121824295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_121824665_121825446_121825892_121827857_121827984_121828162_121828276_121829652_121829744_121831130_121831245_121832312_121832427_121833608_121833713_121835026
transcript_56986.known	chr8	-	959	7	FSM	ENSMUSG00000031809.11	ENSMUST00000183280.2	959	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	3.09569593683445	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTCTGTTGTGAATGCAGC	NA	False	NA	NA	False	GGGGCT	-18	NA	122268608	122257566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_122257781_122258436_122258654_122260433_122260471_122262161_122262309_122266605_122266747_122267267_122267320_122268457
transcript_56990.known	chr8	+	1402	1	FSM	ENSMUSG00000098211.3	ENSMUST00000182145.3	1402	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAAGGGTCTGGAGA	NA	False	NA	NA	False	NA	NA	NA	122268818	122270220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_122268800_122270200
transcript_56992.known	chr8	+	2532	4	FSM	ENSMUSG00000031812.17	ENSMUST00000034270.17	2532	4	0	0	0	0	multi-exon	FALSE	canonical	3	2350	junction_2	129.422649571944	332	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAAATGTACAATTTGTCC	9845	False	NA	NA	False	ATTAAA	-20	NA	122317099	122325499	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_122317304_122320228_122320285_122322724_122322832_122323334
transcript_56994.known	chr8	+	766	4	FSM	ENSMUSG00000031812.17	ENSMUST00000181948.2	766	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	1182.02096240107	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTTGCCAATAAAAAGATCAA	9968	False	NA	-7	True	AATAAA	-19	NA	122317222	122323751	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_122317304_122320228_122320390_122322724_122322832_122323334
transcript_56997.known	chr8	-	2078	12	FSM	ENSMUSG00000040263.17	ENSMUST00000045884.17	2078	12	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_5	29.2453287927892	93	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGCAAGATGACAATGTGC	436	False	NA	-5	True	AATAAA	-37	NA	122556308	122523051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_122523483_122523656_122523768_122524572_122524976_122526186_122526396_122527877_122527954_122531685_122531846_122533244_122533338_122540445_122540583_122546860_122546960_122548018_122548098_122548520_122548613_122556120
transcript_57.known	ERCC-00165	+	856	1	FSM	ERCC-00165A	DQ668363	856	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00165_+_0_900
transcript_570.known	chr1	+	625	4	FSM	ENSMUSG00000061518.12	ENSMUST00000081180.7	625	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	3394.14034280651	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730529	36732467	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_36730771_36731291_36731366_36731511_36731632_36732277
transcript_57013.nic	chr8	-	1528	4	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20923	-712	3493	712	3prime_fragment	FALSE	canonical	3	63	junction_3	15.6418242755334	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGCCTCCCCAACTGACT	NA	False	NA	NA	False	AATAAA	-18	NA	122650720	122642152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_122643247_122644726_122644883_122650293_122650357_122650505
transcript_57015.nic	chr8	-	816	4	ISM	ENSMUSG00000025317.8	ENSMUST00000057653.8	1249	7	20923	0	3493	0	3prime_fragment	FALSE	canonical	3	63	junction_3	15.6418242755334	23	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAGGAGAGACCTGCTTTG	NA	False	NA	NA	False	AAAAAG	-1	NA	122650720	122642864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_122643247_122644726_122644883_122650293_122650357_122650505
transcript_57022.known	chr8	+	5444	14	FSM	ENSMUSG00000025316.17	ENSMUST00000170857.8	5444	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_9	67.0446287820338	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAATTGTCTGTCTTGATGG	NA	False	NA	5	True	AATAAA	-19	NA	122677282	122755997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
transcript_57024.nic	chr8	+	2144	14	NIC	ENSMUSG00000025316.17	novel	5444	14	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	94	junction_9	50.3807984461442	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATCCAACCAACCAACCA	NA	False	NA	NA	False	NA	NA	NA	122677273	122752697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
transcript_57025.nic	chr8	+	2363	14	NIC	ENSMUSG00000025316.17	novel	5444	14	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	94	junction_9	50.3807984461442	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCAGTGTTGTTG	NA	False	NA	7	True	AATAAA	-15	NA	122677273	122752916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
transcript_57028.nic	chr8	+	2237	13	NIC	ENSMUSG00000025316.17	novel	5444	14	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_11	67.3046040195039	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCAGTGTTGTTG	NA	False	NA	7	True	AATAAA	-15	NA	122677273	122752916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122716693_122716811_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122750741_122750886_122752302
transcript_57029.known	chr8	+	1970	13	FSM	ENSMUSG00000025316.17	ENSMUST00000026354.15	1970	13	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	72.3410134171635	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GGAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	TTTAAA	-45	NA	122677318	122752676	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733829_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
transcript_5703.known	chr10	-	6526	10	FSM	ENSMUSG00000055531.13	ENSMUST00000069168.13	6526	10	0	0	0	0	multi-exon	FALSE	canonical	3	507	junction_5	44.0656076524286	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATACTTTGCAGTTTGTT	4474	False	NA	-12	True	AATAAA	-13	NA	117212875	117180577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_117185373_117191839_117192030_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
transcript_57031.known	chr8	+	2289	13	FSM	ENSMUSG00000025316.17	ENSMUST00000093078.13	2289	13	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_4	55.5245191084283	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGAGGCTCAGTGTTGTTG	NA	False	NA	7	True	AATAAA	-15	NA	122677230	122752916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_122677388_122701165_122701305_122702638_122702731_122705293_122705494_122718266_122718443_122723778_122724019_122727702_122727871_122732290_122732422_122733838_122733902_122734491_122734531_122747257_122747384_122750741_122750886_122752302
transcript_57038.known	chr8	+	3705	18	FSM	ENSMUSG00000017478.16	ENSMUST00000093073.12	3705	18	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_3	41.8252254144417	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTCTGGTCCTGGTAATGT	939	False	NA	15	True	AATAAA	-16	NA	123103381	123144099	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_123103540_123110138_123110744_123113600_123113686_123124556_123124706_123124974_123125068_123125743_123125902_123128329_123128448_123129889_123130159_123134070_123134263_123134981_123135108_123137619_123137725_123138022_123138167_123138376_123138443_123139728_123139890_123140001_123140202_123140595_123140690_123142774_123142872_123143214
transcript_57044.known	chr8	-	744	6	FSM	ENSMUSG00000006519.12	ENSMUST00000017604.10	744	6	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_1	96.6531944635044	740	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGGACAAGAAATTCTCCAT	NA	False	NA	NA	False	AATAAA	-18	NA	123159669	123151514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123151827_123152924_123153007_123153674_123153759_123153967_123154043_123154393_123154464_123159548
transcript_57047.known	chr8	-	638	5	FSM	ENSMUSG00000006519.12	ENSMUST00000212600.2	638	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	360.755110843908	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGGACAAGAAATTCTCCAT	NA	False	NA	NA	False	AATAAA	-18	NA	123159647	123151514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123151827_123152924_123153007_123153967_123154043_123154393_123154464_123159548
transcript_57050.known	chr8	-	1756	10	FSM	ENSMUSG00000006517.6	ENSMUST00000006692.6	1756	10	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_4	22.2211110833319	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCCGTGTGGGCTGTGCTT	NA	False	NA	-8	True	AATAAA	-17	NA	123170161	123160339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123160915_123161542_123161652_123163212_123163329_123163748_123163968_123164153_123164229_123164565_123164766_123166115_123166263_123166376_123166492_123166920_123166992_123170032
transcript_57053.known	chr8	-	1628	3	FSM	ENSMUSG00000006587.7	ENSMUST00000006762.7	1628	3	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGAGCCTTGACGTCTCGAG	NA	False	NA	NA	False	AATAAA	-27	NA	123187472	123180946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123181774_123182861_123183468_123187277
transcript_57055.known	chr8	+	3066	15	FSM	ENSMUSG00000049482.17	ENSMUST00000116412.8	3066	15	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_5	16.7624458787116	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGCCGTTGTACAGCTC	8862	False	NA	NA	False	NA	NA	NA	123202881	123209831	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207824_123207964_123208069_123208137_123208209_123208269_123208334
transcript_57058.known	chr8	+	3999	15	FSM	ENSMUSG00000049482.17	ENSMUST00000151855.8	3999	15	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_11	35.9174222974004	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACGCAGGGTGTGATCTG	8928	False	NA	NA	False	NA	NA	NA	123202947	123210877	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123203976_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207871_123207964_123208069_123208137_123208209_123208269_123208334
transcript_57059.nic	chr8	+	1739	15	NIC	ENSMUSG00000049482.17	novel	3066	15	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	1	1	junction_4	37.5312794716022	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAACCCTACAGTACTTG	8862	False	NA	11	True	AATAAA	-13	NA	123202881	123208480	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_123203035_123203253_123203329_123203644_123203724_123203915_123204000_123204923_123204985_123205415_123205526_123205631_123205934_123206015_123206152_123206328_123206461_123206881_123206974_123207640_123207745_123207824_123207964_123208069_123208137_123208209_123208269_123208334
transcript_57071.known	chr8	+	2189	10	FSM	ENSMUSG00000006585.4	ENSMUST00000006760.3	2189	10	0	0	0	0	multi-exon	FALSE	canonical	3	858	junction_2	66.8792905627208	204	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTGAACCTGTCACCGTA	2586	False	NA	27	True	AATAAA	-36	NA	123294753	123299867	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_123295011_123295825_123295985_123296062_123296215_123296642_123296841_123296932_123297079_123297179_123297278_123297979_123298169_123298434_123298588_123298675_123298878_123299232
transcript_57073.known	chr8	+	2696	9	FSM	ENSMUSG00000006585.4	ENSMUST00000212967.2	2696	9	0	0	0	0	multi-exon	FALSE	canonical	3	858	junction_2	70.7626976238187	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGACTGTCTCTGATCATG	2597	False	NA	NA	False	NA	NA	NA	123294764	123300293	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_123295011_123295825_123295985_123296062_123296215_123296642_123297079_123297179_123297278_123297979_123298169_123298434_123298588_123298675_123298878_123299232
transcript_57077.known	chr8	-	554	6	FSM	ENSMUSG00000006589.9	ENSMUST00000212834.2	554	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	691.248030738605	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGTGGAGTGTGTGAGCC	NA	False	NA	NA	False	NA	NA	NA	123303309	123301720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123302619_123302746_123302857_123302971_123303253
transcript_57081.known	chr8	-	660	6	FSM	ENSMUSG00000006589.9	ENSMUST00000213030.2	660	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	634.519030447472	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGGAGCTGGCTAGATGGT	NA	False	NA	NA	False	NA	NA	NA	123303557	123301626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123302857_123302992_123303253_123303361_123303491
transcript_57084.known	chr8	-	723	5	FSM	ENSMUSG00000006589.9	ENSMUST00000212093.2	723	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	642.508171154266	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACCAGGAACTGCTTGGTG	NA	False	NA	NA	False	NA	NA	NA	123303471	123301587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123302857_123302971_123303253
transcript_57085.known	chr8	-	929	5	FSM	ENSMUSG00000006589.9	ENSMUST00000213029.2	929	5	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_3	493.303152229945	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATTCTTCTCTCTCCTCC	NA	False	NA	NA	False	NA	NA	NA	123303592	123301654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123302857_123303361_123303491
transcript_57087.known	chr8	-	849	5	FSM	ENSMUSG00000006589.9	ENSMUST00000006764.9	849	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	617.095414016342	1935	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTGCTTCTCCTCAGTTT	NA	False	NA	-7	True	AATAAA	-15	NA	123303629	123301375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123301767_123301875_123301955_123302140_123302275_123303253_123303361_123303491
transcript_57091.known	chr8	-	560	3	FSM	ENSMUSG00000006589.9	ENSMUST00000213062.2	560	3	0	0	0	0	multi-exon	FALSE	canonical	3	1410	junction_2	2	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCTTCTCCTCAGTTTGT	NA	False	NA	-5	True	AATAAA	-17	NA	123302228	123301373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123301767_123301875_123301955_123302140
transcript_57092.known	chr8	-	2557	14	FSM	ENSMUSG00000015027.12	ENSMUST00000015171.11	2557	14	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_10	4.2966892442366	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTATCCTGGTCTTTTGTT	NA	False	NA	-4	True	NA	NA	NA	123338202	123304980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123305937_123307789_123307908_123311650_123311773_123318176_123318280_123318939_123319077_123322504_123322609_123325258_123325399_123325777_123325906_123326011_123326079_123327213_123327358_123330116_123330220_123330877_123330953_123331878_123332003_123337966
transcript_57093.known	chr8	-	2111	12	FSM	ENSMUSG00000015027.12	ENSMUST00000212319.2	2111	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	6.65191204724608	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTGGGTTGGTTTGAGA	NA	False	NA	NA	False	AATAAA	-38	NA	123338143	123305127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123305937_123307789_123307908_123311650_123311773_123322504_123322609_123325258_123325399_123325777_123325906_123326011_123326079_123327213_123327358_123330116_123330220_123330877_123330953_123331878_123332003_123337966
transcript_57094.known	chr8	+	1659	5	FSM	ENSMUSG00000015013.10	ENSMUST00000015157.10	1659	5	0	0	0	0	multi-exon	FALSE	canonical	3	528	junction_1	75.9884859699152	232	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGAGTGAGCCTCAGGT	5522	False	NA	NA	False	NA	NA	NA	123338384	123343399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_123338433_123339804_123339978_123340659_123340748_123341046_123341127_123342129
transcript_57098.known	chr8	+	2206	10	FSM	ENSMUSG00000015016.9	ENSMUST00000015160.6	2206	10	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	8.97458689169274	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGACCTGTGAGCTGTG	9534	False	NA	13	True	AATAAA	-25	NA	123502243	123544619	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_123502330_123506684_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298_123540411_123544130
transcript_57099.known	chr8	+	2171	10	FSM	ENSMUSG00000015016.9	ENSMUST00000212790.2	2171	10	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	7.64489662745314	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGACCTGTGAGCTGTG	9607	False	NA	13	True	AATAAA	-25	NA	123502316	123544619	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_123502368_123506684_123507375_123508171_123508328_123510685_123510841_123512557_123512704_123517328_123517439_123529253_123529381_123539733_123539869_123540298_123540411_123544130
transcript_57102.known	chr8	+	2137	1	FSM	ENSMUSG00000099881.2	ENSMUST00000186531.2	2137	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATGTTTTACCTGCTGCT	NA	False	NA	9	True	NA	NA	NA	123769204	123771341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_123769200_123771300
transcript_57104.known	chr8	+	780	6	FSM	ENSMUSG00000000740.13	ENSMUST00000000756.6	780	6	0	0	0	0	multi-exon	FALSE	canonical	3	17818	junction_5	2681.35350895774	3769	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGGGTTTCTTTGTCTTTT	NA	False	NA	17	True	AATAAA	-18	NA	123829088	123831983	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_123829185_123829391_123829502_123829583_123829726_123829921_123830096_123830636_123830694_123831782
transcript_57108.nnic	chr8	-	1545	8	NNC	ENSMUSG00000000739.15	novel	3805	7	NA	NA	-6	2	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	44.3805436318802	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGACTCTGTCCCAGGCT	9692	False	NA	-5	True	AATAAA	-18	NA	123885060	123869585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_123870022_123870193_123870402_123872080_123872262_123874789_123874885_123875048_123875176_123875957_123876173_123884177_123884327_123884926
transcript_57110.known	chr8	-	3805	7	FSM	ENSMUSG00000000739.15	ENSMUST00000000755.15	3805	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_6	18.7764628073435	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGACTTGCCTTGGTCAT	9743	False	NA	NA	False	NA	NA	NA	123885009	123866930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123869886_123872080_123872262_123874789_123874885_123875048_123875176_123875957_123876173_123884177_123884327_123884926
transcript_57111.nic	chr8	-	1209	7	NIC	ENSMUSG00000000739.15	novel	3805	7	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	43	junction_6	23.3380947522857	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACAGACTCTGTCCCAGG	9697	False	NA	-7	True	AATAAA	-16	NA	123885055	123869587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_123869886_123872080_123872262_123874789_123874885_123875048_123875176_123875957_123876173_123884177_123884342_123884926
transcript_57114.known	chr8	-	1053	6	FSM	ENSMUSG00000000739.15	ENSMUST00000122819.8	1053	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	38.0189426470542	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACAGACTCTGTCCCAGG	9743	False	NA	-7	True	AATAAA	-16	NA	123885009	123869587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123869886_123872080_123872262_123875048_123875176_123875957_123876173_123884177_123884327_123884926
transcript_57115.known	chr8	+	1115	2	FSM	ENSMUSG00000110537.2	ENSMUST00000212490.2	1115	2	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACAACATGGTGGTGTGTCT	3328	False	NA	1	True	NA	NA	NA	123899583	123905504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_123899783_123904588
transcript_57116.nnic	chr8	+	1527	11	NNC	ENSMUSG00000019278.6	novel	985	7	NA	NA	-61	-587	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	4	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGAGTGGGCACGCTGT	NA	False	NA	NA	False	AATAAA	-15	NA	123920171	123927964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_123920250_123920771_123920926_123925452_123925586_123925783_123925917_123926032_123926184_123926360_123926431_123926679_123926857_123926945_123927031_123927105_123927182_123927376_123927513_123927630
transcript_57119.known	chr8	-	2140	7	FSM	ENSMUSG00000000743.10	ENSMUST00000000759.9	2140	7	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_1	74.3544439380279	261	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTCTCAGACTTTTTTTTTT	9745	False	NA	-4	True	AATAAA	-16	NA	123939499	123931002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123932486_123932882_123933071_123934211_123934341_123934702_123934850_123935759_123935838_123936954_123936975_123939404
transcript_5712.nic	chr10	-	1503	2	ISM	ENSMUSG00000055531.13	ENSMUST00000177145.8	3819	9	-72	12843	-27	-470	5prime_fragment	FALSE	canonical	3	603	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAGAAGAAGAAGA	4444	False	NA	NA	False	NA	NA	NA	117212905	117202552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_117203894_117212743
transcript_57122.known	chr8	+	399	1	FSM	ENSMUSG00000069862.7	ENSMUST00000139165.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5119	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATTTTGGCTGAAAAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	123933361	123933760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_123933400_123933800
transcript_57123.known	chr8	+	491	3	FSM	ENSMUSG00000048478.8	ENSMUST00000060133.8	491	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGGGATCCTTTCCTGTG	NA	False	NA	NA	False	AATAAA	-15	NA	123939622	123948783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_123939737_123939826_123939977_123948556
transcript_57128.known	chr8	+	1580	13	FSM	ENSMUSG00000033862.8	ENSMUST00000213005.2	1580	13	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	49.2958754190788	96	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	2149	False	NA	10	True	GATAAA	-11	NA	123951604	123958989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_123951670_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
transcript_5713.known	chr10	-	2200	10	FSM	ENSMUSG00000055531.13	ENSMUST00000176686.8	2200	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	212.334001975806	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTGTAAAGCTGTTCACGT	4471	False	NA	-9	True	AATAAA	-16	NA	117212878	117184943	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_117185407_117191839_117192033_117194897_117195052_117196344_117196461_117196760_117197266_117197918_117198093_117198879_117199026_117201985_117202090_117203683_117203894_117212743
transcript_57135.known	chr8	+	1642	13	FSM	ENSMUSG00000033862.8	ENSMUST00000036880.8	1642	13	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_10	22.2279853638006	212	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	2125	False	NA	10	True	GATAAA	-11	NA	123951580	123958989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_123951708_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954481_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
transcript_57138.known	chr8	+	1638	13	FSM	ENSMUSG00000033862.8	ENSMUST00000212193.2	1638	13	0	0	0	0	multi-exon	FALSE	canonical	1	10	junction_5	68.2322422970907	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAGACAGTTTGGCAATCC	2153	False	NA	10	True	GATAAA	-11	NA	123951608	123958989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_123951708_123953085_123953159_123953684_123953757_123954161_123954265_123954398_123954505_123955067_123955136_123955586_123955640_123955850_123955921_123957006_123957067_123957332_123957457_123957530_123957671_123958098_123958152_123958372
transcript_5714.known	chr10	+	5195	9	FSM	ENSMUSG00000020183.12	ENSMUST00000020399.6	5195	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	2.14694550466471	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTCTCTTTCCACTACT	NA	False	NA	NA	False	AATAAA	-19	NA	117465404	117523257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_117465433_117465625_117465789_117495672_117495771_117503853_117504027_117506071_117506257_117507500_117507672_117511844_117511998_117515867_117516017_117519182
transcript_57147.known	chr8	+	4071	11	FSM	ENSMUSG00000001065.16	ENSMUST00000001092.15	4071	11	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	4.69148164229596	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCCAGAGTTGTTACTGTT	1634	False	NA	21	True	AGTAAA	-24	NA	123980933	123996484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_123981663_123982445_123982750_123983022_123983070_123983157_123983605_123985049_123985129_123986169_123986254_123991554_123991666_123991733_123991810_123992052_123992171_123994338_123994439_123994508
transcript_5715.known	chr10	+	2006	3	FSM	ENSMUSG00000020183.12	ENSMUST00000141991.2	2006	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	3.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATCTGAGTAATTTTGT	NA	False	NA	NA	False	NA	NA	NA	117511797	117520839	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_117511998_117515867_117516017_117519182
transcript_57150.known	chr8	-	895	6	FSM	ENSMUSG00000032815.17	ENSMUST00000150318.2	895	6	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_3	15.8795465930234	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTTGTGCATGTCTCA	NA	False	NA	NA	False	ATTAAA	-16	NA	124045299	124039021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_124039397_124039759_124039856_124039978_124040113_124043101_124043196_124044800_124044911_124045213
transcript_57151.known	chr8	-	2707	2	FSM	ENSMUSG00000033594.12	ENSMUST00000166768.3	2707	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGGAAAGGCTTTTTATC	NA	False	NA	NA	False	ATTAAA	-17	NA	123962972	123958993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123960985_123962256
transcript_57152.known	chr8	-	2380	3	FSM	ENSMUSG00000033594.12	ENSMUST00000098327.2	2380	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTCTGGAAAGGCTTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	123962948	123958996	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123960985_123962256_123962589_123962888
transcript_57153.known	chr8	-	4485	43	FSM	ENSMUSG00000032815.17	ENSMUST00000035495.15	4485	43	0	0	0	0	multi-exon	TRUE	canonical	3	94	junction_17	20.5305065860605	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCTGGCCTTATTGT	NA	False	NA	-4	True	AAGAAA	-17	NA	124045315	123995038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_123995289_123995483_123995577_123995681_123995818_123996028_123996102_123996598_123996705_123996970_123997034_123997943_123998080_123999058_123999172_124000886_124000992_124001075_124001136_124001206_124001313_124001870_124002044_124004998_124005084_124007930_124008060_124009356_124009431_124010747_124010925_124013208_124013291_124014799_124014991_124015124_124015222_124015462_124015534_124016099_124016237_124016537_124016652_124018135_124018213_124021744_124021795_124021870_124021932_124023032_124023122_124024505_124024566_124024648_124024745_124026748_124026860_124031030_124031165_124031476_124031619_124031991_124032069_124032488_124032602_124033163_124033228_124033868_124033903_124034452_124034536_124035243_124035357_124039322_124039397_124039759_124039856_124039978_124040113_124043101_124043196_124044800_124044911_124045213
transcript_5716.known	chr10	-	3145	12	FSM	ENSMUSG00000020184.16	ENSMUST00000105263.9	3145	12	0	0	0	0	multi-exon	TRUE	canonical	3	51	junction_9	142.979973168527	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTCAGTGATTTTG	NA	False	NA	1	True	AATAAA	-41	NA	117546663	117524779	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545558_117545690_117545850_117545934_117546456
transcript_57160.known	chr8	+	2738	18	FSM	ENSMUSG00000001472.18	ENSMUST00000057934.10	2738	18	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_17	92.4052680533628	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAGAAATTGTCC	NA	False	NA	NA	False	NA	NA	NA	124100562	124128631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124127814
transcript_57161.known	chr8	+	2582	18	FSM	ENSMUSG00000001472.18	ENSMUST00000108840.4	2582	18	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_17	99.4416940675849	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACATGGTGATAT	NA	False	NA	8	True	AAGAAA	-13	NA	124100561	124130545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129885
transcript_57163.known	chr8	+	2649	18	FSM	ENSMUSG00000001472.18	ENSMUST00000212571.2	2649	18	0	0	0	0	multi-exon	TRUE	canonical	3	129	junction_17	98.3685253625717	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAACAAAAACATGGTGATAT	NA	False	NA	8	True	AAGAAA	-13	NA	124100491	124130545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363_124127437_124129888
transcript_5717.known	chr10	-	3099	12	FSM	ENSMUSG00000020184.16	ENSMUST00000020408.16	3099	12	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_11	63.7658423031336	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTCAGTGATTTTG	NA	False	NA	1	True	AATAAA	-41	NA	117546663	117524779	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_117526691_117527049_117527128_117528486_117528643_117530809_117530974_117531857_117531955_117532285_117532345_117537469_117537520_117538106_117538241_117541059_117541135_117545604_117545690_117545850_117545934_117546456
transcript_57171.known	chr8	+	5002	17	FSM	ENSMUSG00000001472.18	ENSMUST00000211932.2	5002	17	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_12	41.7738984744062	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAACATGGTGATATGGCC	NA	False	NA	12	True	AAGAAA	-17	NA	124100594	124130549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_124100804_124108138_124108301_124109265_124109341_124110063_124110183_124111087_124111154_124115303_124115387_124116403_124116535_124117517_124117618_124118319_124118414_124119660_124119754_124119870_124119977_124122289_124122450_124123745_124123834_124124721_124124881_124125254_124125346_124126003_124126084_124127363
transcript_57172.nnic	chr8	+	1604	5	NNC	ENSMUSG00000062380.5	novel	1868	4	NA	NA	-37	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	43.4424907204916	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGCCTGGTATTGGAGA	NA	False	NA	22	True	AATAAA	-22	NA	124138291	124148749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_124138402_124144831_124144941_124145678_124145790_124147345_124148482_124148611
transcript_57173.known	chr8	+	1868	4	FSM	ENSMUSG00000062380.5	ENSMUST00000071134.4	1868	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	7.03957069398096	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGGTATTGGAGATTTCT	NA	False	NA	27	True	AATAAA	-27	NA	124138162	124148754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_124138402_124144831_124144941_124145678_124145790_124147345
transcript_57175.known	chr8	+	3214	13	FSM	ENSMUSG00000001482.16	ENSMUST00000001522.10	3214	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	97.6160278278567	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	31	True	TATAAA	-20	NA	124169724	124190009	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_124169791_124172836_124172924_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
transcript_57177.nnic	chr8	+	1507	12	NNC	ENSMUSG00000001482.16	novel	3127	12	NA	NA	-17	1	at_least_one_novel_splicesite	FALSE	canonical	3	4	junction_11	88.9284232560654	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTATCCCTCTCTCAGT	NA	False	NA	NA	False	NA	NA	NA	124169707	124187255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_124169791_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124187085
transcript_57178.known	chr8	+	3127	12	FSM	ENSMUSG00000001482.16	ENSMUST00000065534.10	3127	12	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	53.2429330273546	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTACTAGTCTGCCATTTG	NA	False	NA	31	True	TATAAA	-20	NA	124169724	124190009	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_124169791_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
transcript_57180.known	chr8	+	3191	12	FSM	ENSMUSG00000001482.16	ENSMUST00000108830.2	3191	12	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	79.5842502795747	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAGGAAATGTTACTAGTCT	NA	False	NA	23	True	TATAAA	-12	NA	124170046	124190001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_124170185_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555_124186666_124188202
transcript_57182.known	chr8	+	1909	11	FSM	ENSMUSG00000001482.16	ENSMUST00000093049.10	1909	11	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	55.0123622470441	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTTATCCCTCTCTCAG	NA	False	NA	NA	False	NA	NA	NA	124169724	124187254	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_124169791_124174526_124174652_124176039_124176138_124179483_124179634_124180967_124181110_124182152_124182318_124183144_124183273_124183409_124183524_124185089_124185171_124186255_124186397_124186555
transcript_57184.known	chr8	+	4227	17	FSM	ENSMUSG00000031967.16	ENSMUST00000001520.13	4227	17	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_4	44.0414843499853	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGGGAGTTTTGCCT	7495	False	NA	16	True	TTTAAA	-20	NA	124204641	124230655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_124204787_124207087_124207176_124207809_124207885_124211341_124211428_124212627_124212778_124214097_124214167_124214939_124215065_124216493_124216765_124219279_124219418_124219613_124219768_124220566_124220675_124221544_124221671_124225326_124225438_124226730_124226847_124227971_124228173_124228253_124228449_124228586
transcript_57187.known	chr8	+	4111	16	FSM	ENSMUSG00000031967.16	ENSMUST00000098320.6	4111	16	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_13	180.225291109643	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGGGAGTTTTGCCT	7495	False	NA	16	True	TTTAAA	-20	NA	124204641	124230655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_124204787_124207087_124207176_124207809_124207885_124211341_124211428_124212627_124212778_124214097_124214167_124214939_124215065_124216493_124216765_124219279_124219418_124219613_124219768_124220566_124220675_124221544_124221671_124225326_124225438_124227971_124228173_124228253_124228449_124228586
transcript_57188.nic	chr8	+	1348	8	ISM	ENSMUSG00000031967.16	ENSMUST00000001520.13	4227	17	-52	13604	-52	374	5prime_fragment	FALSE	canonical	3	631	junction_4	49.623891546763	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTGTTGTTTGTTTTTCT	7443	False	NA	NA	False	NA	NA	NA	124204589	124217051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_124204787_124207087_124207176_124207809_124207885_124211341_124211428_124212627_124212778_124214097_124214167_124214939_124215065_124216493
transcript_57189.known	chr8	+	419	3	FSM	ENSMUSG00000031967.16	ENSMUST00000133606.2	419	3	0	0	0	0	multi-exon	FALSE	canonical	3	684	junction_2	47.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAGAGAGAGAAAAAAAAAA	7532	False	NA	NA	False	NA	NA	NA	124204678	124208032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_124204787_124207087_124207176_124207809
transcript_57190.known	chr8	+	1681	11	FSM	ENSMUSG00000040220.11	ENSMUST00000093043.7	1681	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	6.18789140176199	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTCTGTCGTTGTGAGG	NA	False	NA	7	True	AATGAA	-21	NA	124245572	124263389	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_124245692_124247342_124247430_124249676_124249875_124250816_124251024_124252357_124252413_124253203_124253410_124254650_124254819_124255116_124255204_124257565_124257776_124259991_124260058_124263111
transcript_57191.known	chr8	-	119	1	FSM	ENSMUSG00000119299.1	ENSMUST00000239778.1	119	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGGACTCCCCTCTGTCT	NA	False	NA	NA	False	NA	NA	NA	124306307	124306188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_124306200_124306300
transcript_57193.known	chr8	+	1419	8	FSM	ENSMUSG00000019478.18	ENSMUST00000118535.9	1419	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	133.326360361884	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTACACTGTCCTGCTC	NA	False	NA	12	True	AATAAA	-21	NA	124532723	124562026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_124532906_124550552_124550634_124554062_124554178_124555734_124555798_124556971_124557127_124559541_124559638_124560753_124560887_124561432
transcript_57194.nnic	chr8	+	1360	8	NNC	ENSMUSG00000019478.18	novel	1419	8	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_4	134.59569086713	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTACACTGTCCTGCTC	NA	False	NA	12	True	AATAAA	-21	NA	124532727	124562026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_124532906_124550552_124550634_124554062_124554178_124555734_124555798_124557009_124557110_124559541_124559638_124560753_124560887_124561432
transcript_57195.nic	chr8	+	1377	8	NIC	ENSMUSG00000019478.18	novel	1419	8	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_5	159.435483721121	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGTACACTGTCCTGCTC	NA	False	NA	12	True	AATAAA	-21	NA	124532727	124562026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_124532906_124550552_124550634_124554062_124554178_124555734_124555798_124557009_124557127_124559541_124559638_124560753_124560887_124561432
transcript_57197.known	chr8	-	5808	26	FSM	ENSMUSG00000039509.9	ENSMUST00000044795.8	5808	26	0	0	0	0	multi-exon	TRUE	canonical	3	328	junction_14	43.1434815470425	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGCTTTTCACTTGTAA	NA	False	NA	NA	False	AATAAA	-17	NA	124676004	124623861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_124626250_124629337_124629427_124631290_124631356_124632952_124633034_124634494_124634614_124636622_124636759_124638487_124638647_124641236_124641371_124641913_124642166_124643022_124643123_124644168_124644292_124645510_124645736_124647586_124647682_124649087_124649252_124653868_124653961_124655982_124656141_124657594_124657743_124660105_124660254_124662825_124662897_124663569_124663726_124664873_124665045_124665778_124665914_124667773_124667882_124670993_124671098_124673231_124673351_124675736
transcript_57198.known	chr8	-	4306	13	FSM	ENSMUSG00000031974.9	ENSMUST00000075578.7	4306	13	0	0	0	0	multi-exon	TRUE	canonical	3	39	junction_3	9.48536885008813	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGTCTGTGTGTTATGA	6877	False	NA	0	True	ATTAAA	-18	NA	124709861	124679197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_124681315_124681461_124681497_124682511_124682556_124685237_124685419_124686948_124687029_124688734_124688945_124689731_124689828_124691729_124691866_124693204_124693352_124694739_124694875_124696458_124696662_124697709_124697911_124709140
transcript_572.known	chr1	+	865	4	FSM	ENSMUSG00000061518.12	ENSMUST00000193210.6	865	4	0	0	0	0	multi-exon	FALSE	canonical	3	7132	junction_3	70.6588045940962	2350	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGCTAAAAATTCTTTT	NA	False	NA	NA	False	NA	NA	NA	36730564	36732762	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_36730771_36731291_36731366_36731531_36731632_36732277
transcript_57200.known	chr8	-	2939	14	FSM	ENSMUSG00000039509.9	ENSMUST00000212133.2	2939	14	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_2	25.7454540136092	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAATAAAAAGAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	124675994	124646574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_124647682_124649087_124649252_124653868_124653961_124655982_124656141_124657594_124657743_124660105_124660254_124662825_124662897_124663569_124663726_124664873_124665045_124665778_124665914_124667773_124667882_124670993_124671098_124673231_124673351_124675736
transcript_57201.known	chr8	-	2912	5	FSM	ENSMUSG00000038697.16	ENSMUST00000093039.6	2912	5	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_4	121.207208944023	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATGTGTGGCATCT	4094	False	NA	36	True	ATTAAA	-15	NA	124747747	124723056	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_124724846_124729715_124730441_124734929_124735035_124736427_124736573_124747599
transcript_57202.known	chr8	-	2973	5	FSM	ENSMUSG00000038697.16	ENSMUST00000165628.9	2973	5	0	0	0	0	multi-exon	FALSE	canonical	3	200	junction_4	173.639713199487	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAATGTGTGGCATCT	3705	False	NA	36	True	ATTAAA	-15	NA	124748136	124723056	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_124724846_124729715_124730441_124734929_124735035_124736427_124736573_124747927
transcript_57204.known	chr8	+	6073	10	FSM	ENSMUSG00000031976.15	ENSMUST00000173168.8	6073	10	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_5	56.6139188050884	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATAGTATTCTGCTGGGTA	NA	False	NA	20	True	AATAAA	-24	NA	124748246	124775243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_124748547_124750198_124750338_124751794_124751972_124754597_124757929_124761766_124761915_124763374_124763486_124764899_124765143_124767904_124767993_124771817_124771958_124773847
transcript_57207.known	chr8	+	2825	18	FSM	ENSMUSG00000031979.18	ENSMUST00000034460.11	2825	18	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_7	26.4246660485719	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGTGAGTTATGTATCCAG	NA	False	NA	29	True	AATAAA	-19	NA	125247505	125278747	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_125247691_125252369_125252532_125253838_125253905_125255714_125255796_125256636_125256741_125259167_125259277_125259952_125260133_125262137_125262263_125264521_125264649_125267711_125267852_125269627_125269690_125270748_125270901_125271867_125272042_125272758_125272832_125273289_125273433_125275255_125275396_125276905_125277090_125278129
transcript_57210.known	chr8	-	3301	23	FSM	ENSMUSG00000037300.20	ENSMUST00000214828.2	3301	23	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_6	114.790718661872	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCGTGGTCAGTTTGGTCGT	NA	False	NA	-9	True	ATTAAA	-15	NA	125448717	125398071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403187_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125424732_125424826_125426394_125426461_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_57211.known	chr8	-	2970	20	FSM	ENSMUSG00000037300.20	ENSMUST00000117624.9	2970	20	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_15	118.173026812077	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGGTCAGTTTGGTCGTT	NA	False	NA	-8	True	ATTAAA	-16	NA	125448703	125398070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125426394_125426461_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_57212.known	chr8	-	2905	19	FSM	ENSMUSG00000037300.20	ENSMUST00000231984.2	2905	19	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_6	106.569342173807	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGGTCAGTTTGGTCGTT	NA	False	NA	-8	True	ATTAAA	-16	NA	125448707	125398070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403187_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_57215.known	chr8	-	3148	21	FSM	ENSMUSG00000037300.20	ENSMUST00000118134.3	3148	21	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_17	74.4114238541368	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACCGTGGTCAGTTTGGTC	NA	False	NA	-11	True	ATTAAA	-13	NA	125448722	125398073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406726_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125421568_125421680_125422374_125422492_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_57217.nic	chr8	-	1481	12	ISM	ENSMUSG00000037300.20	ENSMUST00000041614.15	3038	18	-11	8659	0	-453	5prime_fragment	FALSE	canonical	3	125	junction_8	104.246529165125	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACGGGTAAGCCTCCAGTT	NA	False	NA	-8	True	ATTAAA	-18	NA	125448722	125406732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_-_125406811_125408805_125408899_125409921_125410055_125410495_125410627_125411216_125411374_125415269_125415445_125415595_125415738_125417015_125417099_125436641_125436713_125439355_125439432_125440927_125441023_125448475
transcript_57219.nnic	chr8	-	1572	8	NNC	ENSMUSG00000037300.20	novel	2970	20	NA	NA	-562	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_7	120.59833822932	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCGTGGTCAGTTTGGTCGTT	NA	False	NA	-8	True	ATTAAA	-16	NA	125406249	125398070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_-_125398937_125400186_125400267_125400395_125400475_125401100_125401181_125401960_125402097_125403079_125403190_125405740_125405826_125406113
transcript_5722.known	chr10	-	3098	28	FSM	ENSMUSG00000052798.14	ENSMUST00000167943.8	3098	28	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_26	174.04731866881	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAGATGAGAGTTTTCTCTT	NA	False	NA	-7	True	AATAAA	-26	NA	117628603	117586528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_117586873_117587224_117587393_117593171_117593286_117593800_117593927_117595076_117595238_117597149_117597253_117597927_117598041_117599635_117599787_117600221_117600261_117601815_117601935_117602238_117602309_117606092_117606142_117606280_117606427_117607238_117607299_117608959_117609037_117609180_117609272_117610360_117610475_117612115_117612195_117613033_117613123_117613497_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625960_117626371_117626464_117628508
transcript_57223.nnic	chr8	+	1152	6	NNC	ENSMUSG00000031982.6	novel	1165	6	NA	NA	9	-7	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_5	37.0113496106262	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCAGTAACTAAGGTTGTC	NA	False	NA	14	True	AATAAA	-23	NA	125448906	125460855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535_125458681_125460522
transcript_57224.known	chr8	+	1165	6	FSM	ENSMUSG00000031982.6	ENSMUST00000034463.4	1165	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_5	35.5111250173801	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTAAGGTTGTCTTTTGAA	NA	False	NA	21	True	AATAAA	-30	NA	125448877	125460862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535_125458681_125460545
transcript_57230.nic	chr8	+	1089	5	ISM	ENSMUSG00000031982.6	ENSMUST00000034463.4	1165	6	22	1919	2	-224	5prime_fragment	FALSE	canonical	3	83	junction_2	14.0890028036054	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACAGTGGCCTCGTCATTCT	NA	False	NA	NA	False	NA	NA	NA	125448899	125458943	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535
transcript_57231.nic	chr8	+	3048	5	ISM	ENSMUSG00000031982.6	ENSMUST00000034463.4	1165	6	-31	13	-31	-13	intron_retention	FALSE	canonical	3	83	junction_2	14.0890028036054	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCCAGTTCAGTAACTAAG	NA	False	NA	8	True	AATAAA	-17	NA	125448846	125460849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_125449082_125451994_125452115_125455067_125455222_125457530_125457756_125458535
transcript_57234.nic	chr8	+	670	4	NIC	ENSMUSG00000031982.6	novel	1165	6	NA	NA	-31	-1429	combination_of_known_junctions	FALSE	canonical	3	31	junction_3	27.4752413799932	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCCAGGCAGTCAGAGGTG	NA	False	NA	NA	False	ATTAAA	-21	NA	125448846	125457738	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_+_125449082_125451994_125452115_125455067_125455222_125457577
transcript_57237.known	chr8	+	2984	16	FSM	ENSMUSG00000031985.10	ENSMUST00000034466.10	2984	16	0	0	0	0	multi-exon	FALSE	canonical	3	573	junction_6	36.0101220337961	178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCCAATGGTCTTATTAAC	5120	False	NA	34	True	AATAAA	-25	NA	125589771	125616796	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_125590052_125597514_125597698_125600071_125600249_125600957_125601088_125603658_125603787_125604173_125604250_125605251_125605404_125605522_125605654_125606867_125607092_125610094_125610338_125611703_125611784_125612533_125612675_125613421_125613519_125613591_125613686_125614496_125614559_125616010
transcript_5724.nic	chr10	-	1754	3	ISM	ENSMUSG00000052798.14	ENSMUST00000218810.2	1233	9	-4	11247	3	-8182	5prime_fragment	FALSE	canonical	3	907	junction_1	1	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAATAGCATGATAAGCT	NA	False	NA	NA	False	ATTAAA	-32	NA	117628607	117624402	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_117625966_117626371_117626464_117628508
transcript_57246.known	chr8	-	2340	7	FSM	ENSMUSG00000031984.9	ENSMUST00000034465.9	2340	7	0	0	0	0	multi-exon	FALSE	canonical	3	1367	junction_2	144.59416385948	903	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGATTCTGATGAGGCCTCC	NA	False	NA	NA	False	NA	NA	NA	125589859	125565226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_125566706_125567186_125567246_125568032_125568120_125568425_125568522_125569101_125569159_125587684_125588011_125589623
transcript_5725.known	chr10	-	1233	9	FSM	ENSMUSG00000052798.14	ENSMUST00000218810.2	1233	9	0	0	0	0	multi-exon	FALSE	canonical	3	814	junction_2	29.4522919311893	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGTGGTCTTTCTTATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	117628603	117613155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_117613570_117616582_117616632_117617225_117617354_117617861_117617966_117620899_117621045_117623697_117623817_117625878_117625966_117626371_117626464_117628508
transcript_57253.known	chr8	-	3663	2	FSM	ENSMUSG00000031984.9	ENSMUST00000212808.2	3663	2	0	0	0	0	multi-exon	FALSE	canonical	3	1845	junction_1	0	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAGAACCCACA	NA	False	NA	NA	False	NA	NA	NA	125589704	125584428	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_125588011_125589623
transcript_57254.known	chr8	-	3594	5	FSM	ENSMUSG00000031987.7	ENSMUST00000034469.7	3594	5	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_4	22.6605383872493	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTGTTGTCACCTCCAG	NA	False	NA	-17	True	ATTAAA	-30	NA	125676063	125635325	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_125637503_125638479_125638548_125640755_125640893_125642399_125642520_125674971
transcript_57257.known	chr8	+	2391	6	FSM	ENSMUSG00000056820.8	ENSMUST00000075896.7	2391	6	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_1	21.35790251874	191	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCCCTCTGGTTAAGCTT	5194	False	NA	9	True	AATAAA	-14	NA	125739735	125760931	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506_125755635_125759235
transcript_57259.nnic	chr8	+	2089	6	NNC	ENSMUSG00000056820.8	novel	2169	5	NA	NA	10	14	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_5	175.789647021661	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAATTTTCCTTATTAAT	5256	False	NA	NA	False	NA	NA	NA	125739797	125757174	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506_125756583_125756666
transcript_5726.known	chr10	-	2724	8	FSM	ENSMUSG00000052681.9	ENSMUST00000064667.9	2724	8	0	0	0	0	multi-exon	FALSE	canonical	3	789	junction_2	110.417205107146	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAAGACGGTCGTACTCGTTA	8605	False	NA	-10	True	ATTAAA	-12	NA	117681940	117649775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_117651686_117653248_117653366_117654370_117654515_117656366_117656508_117657494_117657552_117658705_117658775_117660498_117660580_117681735
transcript_57260.known	chr8	+	2169	5	FSM	ENSMUSG00000056820.8	ENSMUST00000212603.2	2169	5	0	0	0	0	multi-exon	FALSE	canonical	3	396	junction_1	23.7631542519086	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAGAAAAA	5246	False	NA	NA	False	NA	NA	NA	125739787	125757160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_125739952_125740248_125740354_125742393_125742509_125751245_125751377_125755506
transcript_57262.known	chr8	+	804	3	FSM	ENSMUSG00000043051.18	ENSMUST00000126111.2	804	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCAGCTCTCATCTTCCTT	NA	False	NA	NA	False	NA	NA	NA	125814725	125829617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_125815188_125817111_125817182_125829345
transcript_57263.known	chr8	+	1694	3	FSM	ENSMUSG00000043051.18	ENSMUST00000122389.8	1694	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAT	NA	False	NA	NA	False	NA	NA	NA	125780947	125817734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_125781024_125814192_125815188_125817111
transcript_57265.nnic	chr8	+	1138	5	NNC	ENSMUSG00000031851.15	novel	1155	5	NA	NA	12	0	at_least_one_novel_splicesite	FALSE	canonical	3	42	junction_2	25.0499500997507	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGAGTCCTTGTGTGGG	NA	False	NA	23	True	AATAAA	-31	NA	126460953	126474974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_126461089_126462806_126462965_126464061_126464159_126471974_126472185_126474436
transcript_57266.known	chr8	+	1155	5	FSM	ENSMUSG00000031851.15	ENSMUST00000034313.13	1155	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	22.4388056723169	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGAGTCCTTGTGTGGG	NA	False	NA	23	True	AATAAA	-31	NA	126460941	126474974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126471974_126472185_126474436
transcript_57269.nnic	chr8	+	1443	4	NNC	ENSMUSG00000031851.15	novel	1497	4	NA	NA	49	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	41.9602986961088	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATGTCTAATTAGTTTA	NA	False	NA	NA	False	ACTAAA	-15	NA	126461025	126465918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_126461089_126462806_126462965_126464061_126464159_126464793
transcript_57271.nnic	chr8	+	1041	4	NNC	ENSMUSG00000031851.15	novel	1155	5	NA	NA	12	0	at_least_one_novel_splicesite	TRUE	canonical	2	2	junction_2	46.2913478836908	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGAGTCCTTGTGTGGG	NA	False	NA	23	True	AATAAA	-31	NA	126460953	126474974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr8_+_126461089_126462806_126462965_126471974_126472185_126474436
transcript_57272.known	chr8	+	1497	4	FSM	ENSMUSG00000031851.15	ENSMUST00000065135.12	1497	4	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	41.4273125150814	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCCATGTCTAATTAGTTTA	NA	False	NA	NA	False	ACTAAA	-15	NA	126460976	126465918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_126461089_126462806_126462970_126464061_126464159_126464793
transcript_57274.known	chr8	+	1309	4	FSM	ENSMUSG00000033998.10	ENSMUST00000212831.2	1309	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	57.0438427878066	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTTTGTGGTTTATTACAA	NA	False	NA	19	True	AATAAA	-16	NA	126722174	126757422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_126722554_126751750_126752147_126756230_126756432_126757089
transcript_57275.known	chr8	+	2235	3	FSM	ENSMUSG00000033998.10	ENSMUST00000046765.10	2235	3	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_2	9	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTGTGGTTTATTACAACT	NA	False	NA	21	True	AATAAA	-18	NA	126721908	126757424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_126722554_126751750_126752147_126756230
transcript_57276.known	chr8	+	747	2	FSM	ENSMUSG00000051671.8	ENSMUST00000059093.7	747	2	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	0	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTCTGCGTGCTTCTGGCA	NA	False	NA	7	True	AATAAA	-18	NA	127149253	127152172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_127149570_127151741
transcript_57278.known	chr8	+	564	3	FSM	ENSMUSG00000051671.8	ENSMUST00000211868.2	564	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	118	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTTATTTTCCTTTCCCC	NA	False	NA	-81	True	TATAAA	-21	NA	127149266	127152084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_127149290_127149371_127149570_127151741
transcript_57280.known	chr8	-	4902	5	FSM	ENSMUSG00000093904.3	ENSMUST00000179857.3	4902	5	0	0	0	0	multi-exon	FALSE	canonical	3	5050	junction_1	881.47603484156	153	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTGTCTTTCTATTTCA	NA	False	NA	-3	True	NA	NA	NA	127672590	127657416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_127661810_127663789_127663933_127666621_127666704_127667928_127667976_127672353
transcript_57291.known	chr8	-	3424	11	FSM	ENSMUSG00000033931.10	ENSMUST00000045994.8	3424	11	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_8	10.5470374987482	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATGCTTAGTGTAATTTCTT	NA	False	NA	0	True	ATTAAA	-29	NA	127697821	127673921	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127688661_127688722_127692131_127692373_127696732_127696879_127697487_127697660_127697739
transcript_57293.nnic	chr8	-	1402	10	NIC	ENSMUSG00000033931.10	novel	3424	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	16	junction_8	50.1686046137312	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAGTGTTCAAATGGTCA	NA	False	NA	-11	True	AATAAA	-21	NA	127697799	127675775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr8_-_127676294_127677449_127677569_127678051_127678092_127679913_127679978_127680115_127680200_127686291_127686336_127688661_127688722_127692131_127692373_127697487_127697660_127697739
transcript_57298.nic	chr8	+	2057	5	ISM	ENSMUSG00000025812.19	ENSMUST00000160766.8	4949	23	395739	0	12607	0	3prime_fragment	FALSE	canonical	3	44	junction_1	14.8996644257513	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AACAAAAAAGAAAGAAAAAA	NA	False	NA	NA	False	AAAAAG	-19	NA	128186833	128338451	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr8_+_128186866_128200859_128201097_128319541_128319663_128329539_128329668_128336912
transcript_57299.known	chr8	+	746	4	FSM	ENSMUSG00000025812.19	ENSMUST00000159940.2	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	28.2410261066335	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTTTTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-35	NA	128306204	128337329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_128306285_128319541_128319663_128329539_128329668_128336912
transcript_57301.known	chr8	+	3815	16	FSM	ENSMUSG00000025809.16	ENSMUST00000090006.12	3815	16	0	0	0	0	multi-exon	TRUE	canonical	3	487	junction_6	37.7685348169905	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTTTGGCTCTGTATT	NA	False	NA	16	True	AATAAA	-22	NA	129412134	129459681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr8_+_129412441_129431893_129431961_129433554_129433641_129436733_129436957_129439688_129439860_129440407_129440647_129442602_129442759_129443687_129443784_129444065_129444156_129446472_129446614_129446755_129446956_129448864_129449104_129449290_129449514_129450676_129450910_129452500_129452668_129458503
transcript_57305.known	chr9	-	1128	4	FSM	ENSMUSG00000042360.13	ENSMUST00000188577.2	1128	4	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_3	6.12825877028341	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCAGTGTCAGTCTCAG	NA	False	NA	NA	False	NA	NA	NA	3199799	3190270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_3190806_3192311_3192413_3192819_3193049_3199536
transcript_57308.known	chr9	+	7674	12	FSM	ENSMUSG00000025899.15	ENSMUST00000211933.2	7674	12	0	0	0	0	multi-exon	FALSE	canonical	2	35	junction_1	12.2683493875181	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTGTCATAGTATTTTCT	-8	True	NA	NA	False	NA	NA	NA	3335477	3391154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_3335595_3338455_3338592_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369915_3382693_3382844_3385041
transcript_57313.known	chr9	+	3603	12	FSM	ENSMUSG00000025899.15	ENSMUST00000053407.13	3603	12	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_1	15.6162661540793	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAATAATTAAAAATA	-8	True	NA	NA	False	NA	NA	NA	3335477	3386929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_3335749_3338455_3338592_3343014_3343253_3344587_3344720_3345780_3345877_3347803_3347909_3349419_3349491_3359483_3359591_3367863_3368016_3369657_3369915_3382693_3382844_3385041
transcript_57319.known	chr9	+	4446	18	FSM	ENSMUSG00000025898.7	ENSMUST00000027027.7	4446	18	0	0	0	0	multi-exon	TRUE	canonical	3	200	junction_7	32.0504576240346	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCGATTATCTTGTATTTTA	NA	False	NA	-51	True	NA	NA	NA	3403591	3479236	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_3404191_3409965_3410077_3411328_3411452_3417868_3417983_3418655_3418776_3421285_3421377_3428667_3428784_3430437_3431088_3441054_3441146_3442960_3443048_3447236_3447354_3450013_3450152_3454539_3454753_3456732_3456850_3458733_3458890_3460050_3460132_3475482_3475585_3477816
transcript_5732.known	chr10	+	2461	15	FSM	ENSMUSG00000020212.15	ENSMUST00000163238.9	2461	15	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_7	33.0859270903593	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTTCACACACTCTTGAC	NA	False	NA	NA	False	NA	NA	NA	117977763	118004286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_117977868_117978754_117978870_117982499_117982877_117983885_117984021_117986693_117986862_117987906_117988002_117988079_117988180_117992738_117992769_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
transcript_57324.known	chr9	+	2085	3	FSM	ENSMUSG00000025898.7	ENSMUST00000212644.2	2085	3	0	0	0	0	multi-exon	FALSE	canonical	3	277	junction_2	20.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAAGGTTT	9	True	NA	NA	False	NA	NA	NA	3404087	3413199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_3404191_3409965_3410077_3411328
transcript_5733.known	chr10	+	3074	14	FSM	ENSMUSG00000020212.15	ENSMUST00000020437.13	3074	14	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_4	15.3152281412244	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACTTGATGCTTCTGTTTTC	NA	False	NA	11	True	ATTAAA	-14	NA	117977736	118004902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_117977868_117978754_117978870_117982499_117982877_117983885_117984021_117986693_117986862_117987906_117988002_117988079_117988180_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
transcript_57332.known	chr9	-	2843	6	FSM	ENSMUSG00000025894.12	ENSMUST00000051589.9	2843	6	0	0	0	0	multi-exon	FALSE	canonical	3	643	junction_4	99.1576522513517	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTAGGGCTTGACATGT	1	True	NA	NA	False	AATAAA	-45	NA	4309467	4294792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309253
transcript_57333.known	chr9	-	2810	6	FSM	ENSMUSG00000025894.12	ENSMUST00000212066.2	2810	6	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_5	303.486671865504	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATTTTAGGGCTTGACATG	-1	True	NA	NA	False	AATAAA	-44	NA	4309469	4294793	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4303093_4303216_4308693_4308920_4309287
transcript_57348.known	chr9	-	2519	5	FSM	ENSMUSG00000025894.12	ENSMUST00000212897.2	2519	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_3	415.72677325378	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TCAAAAATTCAGTAAAAGTT	-3	True	NA	-33	True	ATTAAA	-13	NA	4309471	4294964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_4296840_4299297_4299370_4302469_4302632_4308693_4308920_4309287
transcript_57358.nnic	chr9	-	1033	5	NNC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	-150	-1630	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_3	348.214732600446	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTATTTAACAAAACATTT	NA	False	NA	NA	False	AATAAA	-19	NA	4309621	4296594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_4296840_4299297_4299370_4302469_4302632_4308733_4308920_4309253
transcript_5736.known	chr10	+	2022	14	FSM	ENSMUSG00000020212.15	ENSMUST00000169817.3	2022	14	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_6	36.5594271833727	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTCTCATCTTATCTAGTG	NA	False	NA	NA	False	AAGAAA	-26	NA	117977849	118004068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_117977868_117978754_117978870_117982499_117982877_117986693_117986862_117987906_117988002_117988079_117988180_117992738_117992769_117993099_117993276_117994206_117994510_117995351_117995462_117995564_117995675_118000105_118000353_118002529_118002590_118003955
transcript_57364.nnic	chr9	-	727	4	NIC	ENSMUSG00000025894.12	novel	2843	6	NA	NA	-30	-1630	combination_of_known_splicesites	FALSE	canonical	3	71	junction_3	376.029549666276	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTATTTAACAAAACATTT	12	False	4309513	NA	False	AATAAA	-19	NA	4309501	4296594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_4296840_4299297_4299370_4302469_4302632_4309253
transcript_57366.known	chr9	+	2313	4	FSM	ENSMUSG00000025893.9	ENSMUST00000212221.2	2313	4	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	18.4571575998762	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAACGATGGAAAAAAGTCT	0	True	NA	NA	False	AATAAA	-27	NA	4309834	4331711	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_4309935_4313701_4313807_4316826_4317072_4329848
transcript_57367.known	chr9	+	2231	3	FSM	ENSMUSG00000025893.9	ENSMUST00000049648.9	2231	3	0	0	0	0	multi-exon	TRUE	canonical	3	30	junction_1	14.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGAAGGGAAAATTTTCT	-2	True	NA	NA	False	ATTAAA	-18	NA	4309832	4331732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_4309935_4316826_4317072_4329848
transcript_57369.known	chr9	+	2800	3	FSM	ENSMUSG00000041124.12	ENSMUST00000212075.2	2800	3	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	13	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCCTGTCTGAAAGTTTA	-5	True	NA	14	True	AATAAA	-1	NA	4376561	4386870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_4376624_4383536_4384143_4384738
transcript_57371.known	chr9	+	2731	2	FSM	ENSMUSG00000041124.12	ENSMUST00000047173.10	2731	2	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAATAAATTTTCCTGTCT	13	False	NA	5	True	ATTAAA	-13	NA	4383534	4386861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_4384143_4384738
transcript_57372.known	chr9	+	2421	8	FSM	ENSMUSG00000032002.11	ENSMUST00000215683.2	2421	8	0	0	0	0	multi-exon	FALSE	canonical	3	895	junction_7	57.310824564343	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCATTTGCCTTCTTAATA	-21	True	NA	NA	False	AGTAAA	-20	NA	7184519	7208205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_7184883_7186767_7186860_7188745_7188817_7189161_7189254_7203262_7203372_7203450_7203556_7205297_7205401_7206719
transcript_57373.nnic	chr9	+	1909	11	NNC	ENSMUSG00000049723.15	novel	3607	10	NA	NA	-38750	-205	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_7	1.84390889145858	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCTTTTAATTTTTTCT	NA	False	NA	NA	False	AATAAA	-14	NA	7305630	7358683	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_7305828_7347490_7347539_7348584_7348833_7349722_7349872_7350011_7350138_7352887_7353050_7353445_7353570_7354721_7354856_7355311_7355472_7357804_7357909_7358226
transcript_57374.known	chr9	+	2907	5	FSM	ENSMUSG00000050912.16	ENSMUST00000052865.16	2907	5	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	14.5086181285469	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTTTAGTGTTTTGTTGAA	NA	False	NA	16	True	AATAAA	-19	NA	7764041	7794334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_7764314_7768290_7768342_7790842_7791110_7791311_7791466_7792171
transcript_57375.known	chr9	-	3331	8	FSM	ENSMUSG00000057367.13	ENSMUST00000190341.7	3331	8	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_2	22.0352222681815	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGATGTGATTCATGAGA	-20	True	NA	-1	True	AATAAA	-21	NA	7837058	7818227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_7818945_7819021_7819064_7819307_7819563_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836990
transcript_57377.nnic	chr9	-	3124	7	NIC	ENSMUSG00000057367.13	novel	3331	8	NA	NA	-41	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	57.8234861933761	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTGATGTGATTCATGAGA	NA	False	NA	-1	True	AATAAA	-21	NA	7837106	7818227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_7818945_7819021_7819064_7820974_7821221_7825615_7825665_7826931_7827011_7833505_7835381_7836990
transcript_57378.known	chr9	-	1316	1	FSM	ENSMUSG00000057367.13	ENSMUST00000189935.2	1316	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TTAAAAAAAAAAAAAGTTCA	-26	True	NA	NA	False	NA	NA	NA	7837064	7835748	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_7835700_7837100
transcript_57379.known	chr9	-	2667	9	FSM	ENSMUSG00000032000.18	ENSMUST00000013949.15	2667	9	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	6.89202437604511	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGATGCTGGGCAGGTTTAT	6	True	NA	NA	False	AATAAA	-34	NA	7873025	7848699	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_7849458_7849672_7849715_7850920_7851173_7854367_7854608_7857390_7857440_7858701_7858781_7860263_7860364_7860463_7861409_7872823
transcript_57380.known	chr9	-	1592	7	FSM	ENSMUSG00000053070.6	ENSMUST00000065291.2	1592	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2.38047614284762	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TTAAAATCGTCAGTTAAAAA	9	True	NA	NA	False	GATAAA	-30	NA	8042824	8021672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_8022546_8023900_8023968_8025962_8026136_8027101_8027269_8037460_8037537_8042409_8042492_8042670
transcript_57382.known	chr9	+	2369	3	FSM	ENSMUSG00000079084.13	ENSMUST00000169961.3	2369	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCAGTTTTACTGTTTCATC	NA	False	NA	NA	False	NA	NA	NA	13246609	13254424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_13246677_13251695_13252424_13252850
transcript_57383.known	chr9	+	3106	16	FSM	ENSMUSG00000031918.17	ENSMUST00000134674.8	3106	16	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_3	100.823057327622	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGTCCACAGTTGTCTA	NA	False	NA	27	True	ATTAAA	-16	NA	13660492	13717777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_13660697_13693572_13693679_13694901_13695007_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
transcript_57384.known	chr9	+	3088	16	FSM	ENSMUSG00000031918.17	ENSMUST00000155679.8	3088	16	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_2	100.813138473559	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTTGTCCACAGTTGTCTA	NA	False	NA	27	True	ATTAAA	-16	NA	13660476	13717777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_13660697_13671713_13671785_13693572_13693679_13697147_13697224_13699876_13699972_13700335_13700447_13703274_13703377_13704444_13704529_13706532_13706683_13707253_13707443_13710445_13710632_13711171_13711379_13713210_13713304_13714720_13714835_13716101_13716279_13716670
transcript_57388.known	chr9	-	2523	11	FSM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_4	39.1587793476763	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAGCTAACAAAGGCTTTAT	NA	False	NA	NA	False	AATAAA	-26	NA	13738403	13719089	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
transcript_5739.known	chr10	+	1318	3	FSM	ENSMUSG00000020212.15	ENSMUST00000219087.2	1318	3	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTTTTGAGATGCATTAG	NA	False	NA	NA	False	NA	NA	NA	117977818	117983653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_117977868_117978754_117978870_117982499
transcript_57394.known	chr9	-	2262	10	FSM	ENSMUSG00000031922.13	ENSMUST00000147115.8	2262	10	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	63.5314639653475	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAAGCAGTTTTTAAACT	NA	False	NA	NA	False	TATAAA	-17	NA	13738251	13719120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_13720137_13721155_13721301_13721922_13722159_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
transcript_57395.known	chr9	-	2173	10	FSM	ENSMUSG00000031922.13	ENSMUST00000142494.8	2173	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	82.7754660378169	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTAACAAAGGCTTTATTT	NA	False	NA	NA	False	AATAAA	-28	NA	13738287	13719087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_13720137_13721155_13721301_13723928_13724007_13724705_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
transcript_5740.known	chr10	-	7766	15	FSM	ENSMUSG00000020114.13	ENSMUST00000020315.13	7766	15	0	0	0	0	multi-exon	FALSE	canonical	3	515	junction_9	90.891306470073	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAATCCATGTTTTCCTTC	226	False	NA	-27	True	AATAAA	-24	NA	119075960	119035159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_119039111_119042620_119042729_119043931_119044097_119044177_119044348_119045878_119045975_119046559_119048054_119048344_119048487_119049451_119049745_119051106_119051253_119052047_119052154_119052355_119052613_119053845_119053970_119055494_119055650_119063307_119063452_119075545
transcript_57402.nic	chr9	-	1003	7	ISM	ENSMUSG00000031922.13	ENSMUST00000034398.12	2523	11	-8	5638	-8	0	5prime_fragment	FALSE	canonical	3	207	junction_3	26.5	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGTCAAAACCACCAGAAA	NA	False	NA	NA	False	AATAAA	-7	NA	13738411	13724727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_-_13724817_13727350_13727429_13728182_13728300_13729618_13729741_13730154_13730335_13732822_13732980_13738151
transcript_57404.known	chr9	+	3760	11	FSM	ENSMUSG00000037808.14	ENSMUST00000156680.2	3760	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_8	54.6652540467892	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGACTGTGATTTGGAT	NA	False	NA	NA	False	AATAAA	-35	NA	13739011	13757837	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_13739358_13740055_13740121_13741020_13741076_13742277_13742434_13744267_13744468_13747180_13747229_13747398_13747480_13747954_13748013_13748132_13748269_13750935_13751038_13755324
transcript_57405.known	chr9	+	3702	10	FSM	ENSMUSG00000037808.14	ENSMUST00000059579.12	3702	10	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_7	15.6165470962654	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATGACTGTGATTTGGAT	NA	False	NA	NA	False	AATAAA	-35	NA	13739011	13757837	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_13739358_13740055_13740121_13741020_13741076_13742277_13742434_13744267_13744468_13747180_13747229_13747398_13747480_13748132_13748269_13750935_13751038_13755324
transcript_57409.known	chr9	+	1111	7	FSM	ENSMUSG00000004096.10	ENSMUST00000004200.9	1111	7	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_1	58.5484130157826	1003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTTATACAGCTTATAAAAAG	NA	False	NA	3	True	AATAAA	-27	NA	14411912	14421873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_14412078_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
transcript_5741.known	chr10	-	3097	12	FSM	ENSMUSG00000020227.11	ENSMUST00000020448.11	3097	12	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_2	3.60440501847255	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTTTTGTTAACTCAGAA	NA	False	NA	NA	False	ATTAAA	-17	NA	120037564	119977552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_119979097_119981550_119981716_119981802_119981866_119982335_119982535_120000997_120001117_120002309_120002425_120006222_120006288_120012135_120012288_120013972_120014028_120014600_120014705_120018430_120018614_120037231
transcript_57412.known	chr9	+	831	7	FSM	ENSMUSG00000004096.10	ENSMUST00000213913.2	831	7	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	320.421423891863	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGATCAATTTGACTTTTT	NA	False	NA	13	True	ATTAAA	-13	NA	14411942	14421661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_14412040_14413211_14413351_14414109_14414223_14414893_14414983_14416128_14416237_14419146_14419266_14421495
transcript_57414.known	chr9	+	518	2	FSM	ENSMUSG00000111085.2	ENSMUST00000214920.2	518	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCGTGTGTATTTGTATGGA	NA	False	NA	NA	False	NA	NA	NA	14574317	14576395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_14574497_14576056
transcript_57416.known	chr9	+	3286	20	FSM	ENSMUSG00000031928.16	ENSMUST00000034405.11	3286	20	0	0	0	0	multi-exon	TRUE	canonical	3	154	junction_1	46.9081733954962	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAATAATCTCATTCCCT	NA	False	NA	9	True	AATAAA	-27	NA	14695949	14745942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_14696054_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14714059_14714246_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
transcript_57418.nic	chr9	+	2632	20	NIC	ENSMUSG00000031928.16	novel	3286	20	NA	NA	0	-682	combination_of_known_junctions	FALSE	canonical	3	118	junction_1	53.5567113407824	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCCTCCGTTGTTCATTTCT	NA	False	NA	17	True	NA	NA	NA	14695971	14745260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_14696104_14696726_14696825_14698173_14698307_14701868_14702030_14707066_14707155_14708338_14708481_14710851_14710967_14714059_14714246_14716651_14716824_14721099_14721181_14723125_14723253_14726463_14726568_14728091_14728266_14730711_14730775_14736436_14736654_14737830_14737912_14740652_14740712_14742192_14742258_14743936_14744013_14744902
transcript_57427.known	chr9	-	1037	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216037.2	1037	3	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_2	53	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGAGGTATTTGGGTACATC	NA	False	NA	NA	False	NA	NA	NA	14695822	14692284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_14692908_14693910_14694259_14695756
transcript_57428.known	chr9	-	2679	3	FSM	ENSMUSG00000031931.5	ENSMUST00000216372.2	2679	3	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	58.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAACAGTTGTTCTTGTCA	NA	False	NA	NA	False	NA	NA	NA	14696152	14690913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_14692908_14693910_14694259_14695815
transcript_5743.known	chr10	+	904	7	FSM	ENSMUSG00000020225.11	ENSMUST00000020446.11	904	7	0	0	0	0	multi-exon	FALSE	canonical	3	514	junction_6	43.3628104870214	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTCTTCTATAATT	NA	False	NA	31	True	ATTAAA	-43	NA	120044654	120060822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_120044848_120051445_120051555_120053408_120053515_120056655_120056690_120057910_120058029_120059741_120059788_120060524
transcript_57431.known	chr9	-	1753	2	FSM	ENSMUSG00000031931.5	ENSMUST00000034406.4	1753	2	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAACAAATCAAAACAA	NA	False	NA	NA	False	NA	NA	NA	14694260	14691504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_14692908_14693910
transcript_57432.known	chr9	+	428	2	FSM	ENSMUSG00000090023.2	ENSMUST00000159268.2	428	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTCAGAATAAATGTTCCCC	NA	False	NA	NA	False	NA	NA	NA	14756908	14759131	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_14757143_14758937
transcript_57433.known	chr9	+	1991	4	FSM	ENSMUSG00000031937.8	ENSMUST00000034413.8	1991	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_3	3.68178700572909	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAAGCAAGTTTGTTTTTC	NA	False	NA	NA	False	ATTAAA	-1	NA	15150340	15170712	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_15150655_15168525_15168853_15168946_15169088_15169503
transcript_57436.known	chr9	-	3964	12	FSM	ENSMUSG00000031935.10	ENSMUST00000034411.10	3964	12	0	0	0	0	multi-exon	TRUE	canonical	3	139	junction_7	15.3563726777577	178	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGCTGGGCATAGTGGCATA	NA	False	NA	NA	False	NA	NA	NA	15191227	15171646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_15173735_15174899_15175060_15176647_15176766_15178709_15178848_15181638_15181824_15182906_15183038_15183802_15183956_15185580_15185666_15185744_15185882_15187141_15187362_15188852_15189020_15190845
transcript_5744.known	chr10	+	593	3	FSM	ENSMUSG00000020225.11	ENSMUST00000145015.8	593	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGACCCCTAGATAAGTCTCA	NA	False	NA	NA	False	AATAAA	-32	NA	120037516	120039113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_120037755_120038006_120038101_120038852
transcript_57444.nic	chr9	+	1422	13	NIC	ENSMUSG00000031939.17	novel	1216	12	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	69	junction_1	171.959055204042	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTATAGTTTGTATGTA	9038	False	NA	7	True	NA	NA	NA	15217475	15228274	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
transcript_5745.known	chr10	+	486	3	FSM	ENSMUSG00000020225.11	ENSMUST00000134797.8	486	3	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_1	20.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGTGCTTGTCTGTGCTTT	NA	False	NA	NA	False	AATAAA	-16	NA	120044684	120053622	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_120044848_120051445_120051555_120053408
transcript_57454.known	chr9	+	1216	12	FSM	ENSMUSG00000031939.17	ENSMUST00000213763.2	1216	12	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_9	145.029663537447	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGAACCTTTTATAGTT	9118	False	NA	-1	True	NA	NA	NA	15217555	15228266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15224069_15224133_15225285_15225329_15225526_15225561_15226397_15226428_15226678_15226737_15228184
transcript_5746.known	chr10	+	647	3	FSM	ENSMUSG00000020225.11	ENSMUST00000123802.7	647	3	0	0	0	0	multi-exon	FALSE	canonical	3	514	junction_2	3.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTGTGTTCTTCTATAATT	NA	False	NA	31	True	ATTAAA	-43	NA	120057725	120060822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_120058029_120059741_120059788_120060524
transcript_57472.known	chr9	-	2650	9	FSM	ENSMUSG00000031938.16	ENSMUST00000178977.9	2650	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	3.64005494464026	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTTTTTTTCTTTTCTTTC	NA	False	NA	-7	True	AATAAA	-15	NA	15217463	15194634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_15196288_15198651_15198769_15201962_15202113_15203295_15203473_15205727_15205830_15205981_15206056_15209138_15209238_15212662_15212810_15217332
transcript_5748.known	chr10	+	767	4	FSM	ENSMUSG00000020224.16	ENSMUST00000220107.2	767	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	586.90373997786	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGAAACTTTGTTTTCAGT	NA	False	NA	-91	True	NA	NA	NA	120063006	120067469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_120063029_120063878_120064109_120066314_120066468_120067107
transcript_57482.nic	chr9	+	1514	7	NIC	ENSMUSG00000031939.17	novel	1148	7	NA	NA	-34	1	intron_retention	FALSE	canonical	3	69	junction_1	217.881275010038	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTCTTAAGTGCTTAGCCC	9038	False	NA	6	True	AATAAA	-17	NA	15217475	15223401	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
transcript_57483.nic	chr9	+	1273	7	NIC	ENSMUSG00000031939.17	novel	1148	7	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_6	198.555407884046	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTCTTAAGTGCTTAGCC	9038	False	NA	5	True	AATAAA	-16	NA	15217475	15223400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223113
transcript_57484.known	chr9	+	1148	7	FSM	ENSMUSG00000031939.17	ENSMUST00000034415.6	1148	7	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_6	190.157317912184	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCTCTTAAGTGCTTAGCC	9072	False	NA	5	True	AATAAA	-16	NA	15217509	15223400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822_15222992_15223204
transcript_57490.known	chr9	+	1005	6	FSM	ENSMUSG00000031939.17	ENSMUST00000164079.9	1005	6	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_1	106.167791726116	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCGTTGCTTGATTTCAGA	9122	False	NA	NA	False	AATAAA	-17	NA	15217559	15223094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_15217580_15219023_15219118_15219820_15220212_15221154_15221331_15221653_15221706_15222822
transcript_57496.known	chr9	+	629	4	FSM	ENSMUSG00000031939.17	ENSMUST00000215124.2	629	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	198.269737703183	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGAGTTTTTTTTTTAAATG	9116	False	NA	NA	False	AAGAAA	-35	NA	15217553	15220211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_15217580_15218168_15218287_15219023_15219118_15219820
transcript_57499.nic	chr9	+	407	3	ISM	ENSMUSG00000031939.17	ENSMUST00000164079.9	1005	6	-84	3065	-34	0	5prime_fragment	FALSE	canonical	3	288	junction_1	109	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAATATGAGCCAAAATTA	9038	False	NA	25	True	TTTAAA	-29	NA	15217475	15220029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_15217580_15219023_15219118_15219820
transcript_575.known	chr1	+	344	3	FSM	ENSMUSG00000061518.12	ENSMUST00000195151.6	344	3	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_2	3647.5	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGCTGGCTAGTCTTATGTC	NA	False	NA	23	True	AATAAA	-28	NA	36730690	36732467	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_36730771_36731291_36731366_36732277
transcript_57501.known	chr9	+	612	3	FSM	ENSMUSG00000031939.17	ENSMUST00000216109.2	612	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	247	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAATATGAGCCAAAATTA	9187	False	NA	25	True	TTTAAA	-29	NA	15217624	15220029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_15217934_15219023_15219118_15219820
transcript_57502.known	chr9	+	994	3	FSM	ENSMUSG00000058173.13	ENSMUST00000215907.2	994	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	1	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACTGGGTGTTTCTCTTGT	NA	False	NA	8	True	AATAAA	-16	NA	15404727	15456553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_15404926_15436923_15437001_15455834
transcript_57503.known	chr9	+	6539	11	FSM	ENSMUSG00000043885.15	ENSMUST00000061568.9	6539	11	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	2.41039415863879	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAATGTGTGTTTGCCTC	NA	False	NA	NA	False	AATAAA	-17	NA	15621034	15654657	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_15621134_15630928_15631053_15631995_15632087_15633228_15633318_15634809_15634906_15635816_15635902_15638106_15638335_15639996_15640096_15645432_15645603_15648167_15648338_15649369
transcript_57507.known	chr9	+	5789	11	FSM	ENSMUSG00000001774.9	ENSMUST00000001825.9	5789	11	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_1	72.6983493622792	354	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCTCTTAAGAGTCTGTGG	8365	False	NA	NA	False	ATTAAA	-22	NA	18203420	18228738	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321_18213480_18215578_18215683_18216588_18216648_18220045_18220117_18221128_18221235_18223207_18223328_18223725_18223789_18224073
transcript_57513.known	chr9	+	519	4	FSM	ENSMUSG00000001774.9	ENSMUST00000213605.2	519	4	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_1	89.2785901919753	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCGTGTATTTTCCTTTG	8546	False	NA	NA	False	TATAAA	-16	NA	18203601	18213578	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_18203757_18206595_18206646_18212301_18212359_18213321
transcript_57515.known	chr9	+	3988	9	FSM	ENSMUSG00000057551.11	ENSMUST00000208694.2	3988	9	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_2	38.1313519298752	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGGACTGATATTTGTT	NA	False	NA	14	True	AATAAA	-17	NA	19533423	19561027	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_19533582_19540392_19540503_19543629_19543685_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
transcript_57517.nic	chr9	+	2571	8	NIC	ENSMUSG00000057551.11	novel	3988	9	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	124	junction_2	34.0665614972351	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTGGCCAGCTCTTTATT	NA	False	NA	9	True	ATTAAA	-12	NA	19533392	19559634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_19533582_19540392_19540503_19552361_19552551_19553259_19553400_19553893_19554021_19554904_19555001_19556520_19556604_19557997
transcript_57519.known	chr9	-	608	3	FSM	ENSMUSG00000045519.16	ENSMUST00000143992.3	608	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	0.5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTTCTTGTCATATATT	NA	False	NA	NA	False	NA	NA	NA	20296473	20263876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20264138_20265359_20265546_20296312
transcript_5752.known	chr10	+	1664	3	FSM	ENSMUSG00000020224.16	ENSMUST00000020444.16	1664	3	0	0	0	0	multi-exon	FALSE	canonical	3	990	junction_2	137	887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCATTCTCAGAATCGGTT	NA	False	NA	NA	False	NA	NA	NA	120062974	120068487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_120063029_120063878_120064109_120067107
transcript_57520.nnic	chr9	-	562	3	NNC	ENSMUSG00000045519.16	novel	620	3	NA	NA	-12311	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_2	14.5	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGCTTCTTGTCATATATT	NA	False	NA	NA	False	NA	NA	NA	20279253	20263876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_20264138_20265359_20265546_20279138
transcript_57525.known	chr9	-	2135	9	FSM	ENSMUSG00000059475.14	ENSMUST00000163348.8	2135	9	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_8	10.295630140987	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAAAGTGGATGCTGGCAAG	NA	False	NA	NA	False	NA	NA	NA	20404038	20381121	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20382542_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20397625_20397734_20403681_20403748_20403993
transcript_57528.known	chr9	-	3557	7	FSM	ENSMUSG00000059475.14	ENSMUST00000115562.9	3557	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_6	10.4309901522126	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCTTCTAGTTTTATTTG	NA	False	NA	NA	False	NA	NA	NA	20404042	20379844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20382545_20382994_20383078_20384323_20384405_20386202_20386330_20387691_20387775_20389428_20389551_20403681
transcript_57530.known	chr9	-	6283	9	FSM	ENSMUSG00000060510.15	ENSMUST00000174462.8	6283	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_8	12.7156399760295	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTGTTAATGTTGTTTCTT	NA	False	NA	NA	False	AATAAA	-1	NA	20432713	20406363	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20411774_20412169_20412250_20413336_20413418_20416347_20416475_20417272_20417362_20418023_20418179_20419314_20419482_20432315_20432416_20432639
transcript_57531.known	chr9	-	2266	9	FSM	ENSMUSG00000060510.15	ENSMUST00000068296.8	2266	9	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_8	12.1140414395857	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTATCTGTTGCCACCTTTA	NA	False	NA	NA	False	NA	NA	NA	20432704	20410360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20411774_20412169_20412250_20413336_20413418_20416347_20416475_20417272_20417362_20418023_20418179_20419314_20419482_20432315_20432416_20432650
transcript_57532.known	chr9	-	679	2	FSM	ENSMUSG00000060510.15	ENSMUST00000213275.2	679	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAGAAG	NA	False	NA	NA	False	AATACA	-6	NA	20432706	20431803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20432416_20432639
transcript_57533.known	chr9	+	2661	7	FSM	ENSMUSG00000058192.17	ENSMUST00000140668.8	2661	7	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_4	12.0369800568452	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAGCTGAGTTTCATGATAT	42	False	NA	25	True	ATTAAA	-25	NA	20492820	20506490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_20492975_20499130_20499220_20499804_20499932_20500752_20500855_20502108_20502181_20502634_20502718_20504456
transcript_57534.known	chr9	+	12974	6	FSM	ENSMUSG00000058192.17	ENSMUST00000115557.10	12974	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	3.8262252939418	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAATTGTTGATTAATGAT	NA	False	NA	NA	False	NA	NA	NA	20492620	20516705	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_20492975_20499130_20499220_20499804_20499932_20502108_20502181_20502634_20502718_20504456
transcript_5754.known	chr10	+	1463	3	FSM	ENSMUSG00000020224.16	ENSMUST00000130198.3	1463	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	477.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGGAGTTTGACATTT	NA	False	NA	8	True	AATAAA	-17	NA	120063090	120067976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_120063455_120063878_120064109_120067107
transcript_57540.known	chr9	+	794	5	FSM	ENSMUSG00000084786.10	ENSMUST00000161486.8	794	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	472.738828530088	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCCCTAGACAAATACTAGAG	NA	False	NA	NA	False	NA	NA	NA	20556129	20558436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556897_20556956_20557911
transcript_57541.known	chr9	+	412	5	FSM	ENSMUSG00000084786.10	ENSMUST00000160874.8	412	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	478.321740567999	724	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	NA	False	NA	16	True	AATAAA	-13	NA	20556130	20558071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_20556190_20556488_20556556_20556701_20556790_20556917_20556956_20557911
transcript_57542.known	chr9	+	489	5	FSM	ENSMUSG00000084786.10	ENSMUST00000161882.8	489	5	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_4	473.611127403063	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGCTGCTTTGCTGCTGTC	NA	False	NA	10	True	AATAAA	-7	NA	20556163	20558065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_20556190_20556488_20556556_20556701_20556786_20556917_20556990_20557825
transcript_57544.known	chr9	+	505	5	FSM	ENSMUSG00000084786.10	ENSMUST00000162303.8	505	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	467.366558495577	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	NA	False	NA	16	True	AATAAA	-13	NA	20556116	20558071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_20556273_20556488_20556556_20556701_20556786_20556917_20556956_20557911
transcript_57547.known	chr9	+	2511	4	FSM	ENSMUSG00000084786.10	ENSMUST00000154429.9	2511	4	0	0	0	0	multi-exon	FALSE	canonical	3	1046	junction_3	4.78423336480244	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	9544	False	NA	16	True	AATAAA	-13	NA	20554173	20558071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_20556190_20556488_20556786_20556917_20556956_20557911
transcript_57549.known	chr9	-	761	4	FSM	ENSMUSG00000066892.15	ENSMUST00000131343.8	761	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	34.3446583263767	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTACCGGGTCACTGAGACCG	NA	False	NA	NA	False	NA	NA	NA	20556054	20550096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20550495_20553319_20553393_20555490_20555595_20555868
transcript_57551.known	chr9	-	2086	3	FSM	ENSMUSG00000066892.15	ENSMUST00000086459.6	2086	3	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_2	12	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTGTTGCACTTATTT	NA	False	NA	-4	True	ATTAAA	-18	NA	20554102	20549084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20550495_20553319_20553393_20553499
transcript_57552.known	chr9	-	2056	3	FSM	ENSMUSG00000066892.15	ENSMUST00000086458.10	2056	3	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	23	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTGTGTTGCACTTATTT	NA	False	NA	-4	True	ATTAAA	-18	NA	20556063	20549084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20550495_20553319_20553393_20555490
transcript_57553.known	chr9	-	1668	3	FSM	ENSMUSG00000066892.15	ENSMUST00000151861.9	1668	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	46.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGTGTTGCACTTATTTAA	NA	False	NA	-2	True	ATTAAA	-20	NA	20556051	20549082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20550495_20553319_20553393_20555868
transcript_57554.known	chr9	+	501	4	FSM	ENSMUSG00000084786.10	ENSMUST00000160124.2	501	4	0	0	0	0	multi-exon	FALSE	canonical	3	1046	junction_3	68.2658203072535	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGCTGCTGTCATACTT	NA	False	NA	16	True	AATAAA	-13	NA	20556336	20558071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_20556556_20556701_20556786_20556917_20556956_20557911
transcript_57559.known	chr9	+	3843	4	FSM	ENSMUSG00000032171.8	ENSMUST00000034689.8	3843	4	0	0	0	0	multi-exon	FALSE	canonical	3	2626	junction_2	73.4892282356174	2169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGTTTGTCAGAGGGATC	NA	False	NA	NA	False	NA	NA	NA	20563390	20577880	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_20563494_20566657_20566877_20573593_20573705_20574470
transcript_5756.known	chr10	-	3710	5	FSM	ENSMUSG00000056758.15	ENSMUST00000072777.14	3710	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	7.32717544487642	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGGTGTGTGTGTTCAG	NA	False	NA	-13	True	AATAAA	-20	NA	120312374	120197179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_120200202_120210572_120210606_120298568_120298620_120309156_120309244_120311857
transcript_57563.known	chr9	-	1895	6	FSM	ENSMUSG00000032172.9	ENSMUST00000215999.2	1895	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	2.92574776766556	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGCCTGGGTTGTTTTGTA	NA	False	NA	-3	True	AATAAA	-18	NA	20657645	20578988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20580081_20582995_20583103_20583430_20583651_20583922_20584070_20586869_20587020_20657466
transcript_57564.known	chr9	+	1683	8	FSM	ENSMUSG00000038884.15	ENSMUST00000043911.8	1683	8	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_6	22.3469853694417	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTAATAGCCTTAATTCC	NA	False	NA	19	True	AATAAA	-28	NA	20779937	20785603	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_20780233_20780625_20780750_20780899_20780950_20782492_20782532_20782671_20782822_20784163_20784268_20784405_20784561_20784837
transcript_57567.nic	chr9	+	1722	7	NIC	ENSMUSG00000038884.15	novel	1683	8	NA	NA	-19	-118	intron_retention	TRUE	canonical	3	88	junction_5	14.0118997046558	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTGTGCAAAGCTTTT	NA	False	NA	-99	True	AATAAA	-15	NA	20779918	20785485	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_20780233_20780625_20780750_20780899_20780950_20782492_20782532_20782671_20782822_20784163_20784561_20784837
transcript_57568.nic	chr9	+	1840	7	NIC	ENSMUSG00000038884.15	novel	1683	8	NA	NA	-19	0	intron_retention	FALSE	canonical	3	88	junction_5	14.0118997046558	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTAATAGCCTTAATTCC	NA	False	NA	19	True	AATAAA	-28	NA	20779918	20785603	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_20780233_20780625_20780750_20780899_20780950_20782492_20782532_20782671_20782822_20784163_20784561_20784837
transcript_5757.nic	chr10	-	1287	4	ISM	ENSMUSG00000056758.15	ENSMUST00000072777.14	3710	5	-555	13349	-555	-13349	5prime_fragment	FALSE	canonical	1	6	junction_1	6.12825877028341	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTCAAGCAAAATACATATGG	NA	False	NA	NA	False	NA	NA	NA	120312929	120210528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_120210606_120298568_120298620_120309156_120309244_120311857
transcript_57571.nnic	chr9	-	1048	5	NNC	ENSMUSG00000038742.8	novel	1582	6	NA	NA	1866	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_4	50.2910280268757	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGTCTGTCTTCCTGT	NA	False	NA	-5	True	NA	NA	NA	20789157	20785103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687_20787866_20789011
transcript_57572.known	chr9	-	1582	6	FSM	ENSMUSG00000038742.8	ENSMUST00000043726.8	1582	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	47.4409106152064	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGTCTGTCTTCCTGT	NA	False	NA	-5	True	NA	NA	NA	20791023	20785103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20785369_20786461_20786733_20786809_20786998_20787687_20787866_20789344_20789900_20790898
transcript_57574.known	chr9	+	1670	11	FSM	ENSMUSG00000004100.13	ENSMUST00000004203.6	1670	11	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_9	65.2172523186925	1081	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	13	True	AATAAA	-14	NA	20799470	20803474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_20799614_20799702_20799874_20800633_20800736_20800929_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802503_20802582_20802662_20802746_20803044_20803127
transcript_5758.nnic	chr10	-	1318	4	NNC	ENSMUSG00000056758.15	novel	3389	2	NA	NA	-246	8574	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_1	7.40870359029762	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTTAAAGTGAATGCGTTTT	NA	False	NA	NA	False	ATTAAA	-24	NA	120312620	120297620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_120298038_120298568_120298620_120309156_120309244_120311857
transcript_57581.known	chr9	+	1834	9	FSM	ENSMUSG00000004100.13	ENSMUST00000147780.2	1834	9	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_7	71.605582010064	292	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTGAGTCTTCACTCTG	NA	False	NA	13	True	AATAAA	-14	NA	20799580	20803474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_20799614_20799702_20799874_20800633_20800981_20801066_20801238_20801934_20802012_20802200_20802309_20802378_20802662_20802746_20803044_20803127
transcript_57587.known	chr9	-	1101	11	FSM	ENSMUSG00000070319.7	ENSMUST00000004206.10	1101	11	0	0	0	0	multi-exon	FALSE	canonical	3	2112	junction_10	212.212370044727	1807	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTCCTGCTTATTTTCT	5139	False	NA	-1	True	AGTAAA	-16	NA	20809919	20805644	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20805739_20805928_20806036_20806128_20806266_20806384_20806493_20807123_20807314_20807411_20807517_20809002_20809063_20809183_20809273_20809379_20809464_20809673_20809721_20809839
transcript_5759.known	chr10	+	2294	10	FSM	ENSMUSG00000020218.12	ENSMUST00000020439.11	2294	10	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	5.2704627669473	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGGGTCTTTGTAAGACT	NA	False	NA	NA	False	AATAAA	-27	NA	120869864	120936555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_120870396_120870870_120871011_120911150_120911260_120918030_120918172_120919792_120919889_120920813_120920910_120926015_120926112_120931903_120932000_120932545_120932642_120935662
transcript_57595.known	chr9	-	5367	39	FSM	ENSMUSG00000004099.17	ENSMUST00000004202.17	5367	39	0	0	0	0	multi-exon	TRUE	canonical	3	422	junction_35	116.269340570878	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCAGCTAGTGATTGAGTTC	NA	False	NA	-7	True	AATAAA	-17	NA	20864275	20818504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20818858_20819166_20819258_20819767_20820049_20820385_20820582_20820988_20821167_20821435_20821603_20822712_20822855_20823028_20823312_20823475_20823605_20823867_20823953_20825192_20825386_20827017_20827237_20828592_20828767_20829201_20829339_20829411_20829617_20829730_20829847_20831135_20831284_20831404_20831503_20833318_20833497_20833589_20833778_20834061_20834214_20834997_20835091_20835318_20835438_20837740_20837851_20837926_20838008_20838101_20838145_20838402_20838468_20840343_20840426_20841420_20841462_20843410_20843496_20845814_20845856_20847838_20847918_20848457_20848490_20849366_20849443_20851771_20851851_20852668_20852880_20852994_20853103_20853878_20853916_20864003
transcript_57597.known	chr9	-	6394	2	FSM	ENSMUSG00000043895.7	ENSMUST00000054197.7	6394	2	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_1	0	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTTTTGTTTTGTTTTGT	8094	False	NA	NA	False	NA	NA	NA	20888077	20873656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20879867_20887893
transcript_5760.known	chr10	+	1493	6	FSM	ENSMUSG00000020218.12	ENSMUST00000145691.2	1493	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	6.01331855134916	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTCTGAGTACTGTATGGG	NA	False	NA	NA	False	AATAAA	-14	NA	120919659	120936542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_120919889_120920813_120920910_120926015_120926112_120931903_120932000_120932545_120932642_120935662
transcript_57602.known	chr9	+	1288	9	FSM	ENSMUSG00000003299.11	ENSMUST00000003386.7	1288	9	0	0	0	0	multi-exon	FALSE	canonical	3	832	junction_5	79.3851371479574	568	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAGCTGGTCACTGCTGTGG	NA	False	NA	26	True	AATAAA	-26	NA	20914033	20920135	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_20914294_20914379_20914447_20914549_20914701_20917429_20917482_20918122_20918241_20918729_20918837_20918926_20919037_20919118_20919196_20919789
transcript_5761.known	chr10	-	3024	21	FSM	ENSMUSG00000020115.4	ENSMUST00000020316.4	3024	21	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_12	17.7	80	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTTGTGTGCTTTTGTACC	3878	False	NA	0	True	AATAAA	-22	NA	121422692	121382359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_121383094_121387155_121387228_121387391_121387499_121388104_121388202_121388312_121388415_121388933_121388974_121389649_121389727_121389807_121389930_121391891_121391971_121393106_121393209_121395751_121395844_121396145_121396205_121397481_121397679_121399830_121400011_121403933_121404045_121406535_121406697_121407747_121407930_121412178_121412309_121414484_121414626_121420100_121420247_121422599
transcript_57611.known	chr9	+	2535	7	FSM	ENSMUSG00000037405.9	ENSMUST00000086399.6	2535	7	0	0	0	0	multi-exon	FALSE	canonical	3	355	junction_3	34.8456915876586	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGTGAGTTTGTGTACAG	NA	False	NA	16	True	AATAAA	-21	NA	20927280	20940113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_20927398_20930214_20930476_20936839_20937155_20937607_20937896_20938373_20938632_20938727_20938977_20939066
transcript_57613.known	chr9	+	2203	2	FSM	ENSMUSG00000037405.9	ENSMUST00000215003.2	2203	2	0	0	0	0	multi-exon	FALSE	canonical	3	431	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCAGCCTGCTGGCCCTGT	NA	False	NA	NA	False	NA	NA	NA	20927280	20932300	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_20927398_20930214
transcript_57614.known	chr9	+	1028	2	FSM	ENSMUSG00000001014.7	ENSMUST00000215077.2	1028	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTCTGCCTTACGGTTCTT	NA	False	NA	NA	False	AATAAA	-14	NA	20940749	20941890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_20941120_20941232
transcript_57615.known	chr9	-	3470	13	FSM	ENSMUSG00000010205.12	ENSMUST00000115487.3	3470	13	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_7	41.8140725912541	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGAGCTGGCTGGTTCTTG	NA	False	NA	-2	True	ATTAAA	-31	NA	21003304	20985453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20986793_20986880_20986965_20987259_20987404_20987862_20987938_20990504_20990811_20990896_20991109_20991379_20991468_20992000_20992114_20992270_20992401_20992479_20992672_20997540_20998011_21001545_21001613_21003054
transcript_57617.known	chr9	-	1010	5	FSM	ENSMUSG00000079681.4	ENSMUST00000115494.3	1010	5	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	4.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTATTTTTAATTATGTTTT	921	False	NA	NA	False	AATAAA	-21	NA	20978389	20973688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20974014_20974189_20974284_20974609_20974693_20977319_20977674_20978235
transcript_57618.known	chr9	-	812	5	FSM	ENSMUSG00000079677.3	ENSMUST00000010348.7	812	5	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_3	56.6171352154098	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984840	20978815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20979222_20979325_20979414_20984370_20984478_20984559_20984615_20984684
transcript_57620.known	chr9	-	1662	5	FSM	ENSMUSG00000032175.12	ENSMUST00000214864.2	1662	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	20.5106679559687	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGGGCCTTACTCTGTT	NA	False	NA	NA	False	NA	NA	NA	21042539	21034754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21035855_21036159_21036278_21038419_21038640_21039855_21040008_21042467
transcript_57621.nnic	chr9	-	744	4	NIC	ENSMUSG00000079677.3	novel	812	5	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	32	junction_3	142.14312036348	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCCGACATGTTTTGTGT	NA	False	NA	-7	True	AATAAA	-12	NA	20984827	20978815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_20979222_20979325_20979414_20984370_20984478_20984684
transcript_57622.known	chr9	-	681	4	FSM	ENSMUSG00000079677.3	ENSMUST00000215631.2	681	4	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_3	51.1881062574327	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCAGGAAAGAGAAGTTGGA	NA	False	NA	NA	False	AAGAAA	-32	NA	20984802	20978990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_20979222_20979325_20979414_20984370_20984615_20984684
transcript_57629.known	chr9	-	7851	8	FSM	ENSMUSG00000019471.11	ENSMUST00000019615.11	7851	8	0	0	0	0	multi-exon	FALSE	canonical	3	1564	junction_6	89.7352113903194	510	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCCTTGGTCATGGTGTTT	NA	False	NA	NA	False	NA	NA	NA	21061278	21044517	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21051260_21052053_21052126_21052248_21052432_21053306_21053430_21053508_21053625_21053717_21053827_21054242_21054522_21061051
transcript_57635.nic	chr9	+	1606	4	ISM	ENSMUSG00000032177.18	ENSMUST00000003395.10	2524	10	8054	0	8054	0	3prime_fragment	FALSE	canonical	3	21	junction_2	2.62466929133727	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGTGAAACACATCAGCT	NA	False	NA	NA	False	NA	NA	NA	21116054	21122923	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_21116421_21116586_21116710_21117440_21117624_21121989
transcript_57636.known	chr9	-	3172	6	FSM	ENSMUSG00000003308.16	ENSMUST00000049567.10	3172	6	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_5	30.9993548319961	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTGTGGCTCTGAATTAACC	NA	False	NA	0	True	AATAAA	-17	NA	21150367	21141026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150088
transcript_57637.known	chr9	-	3151	6	FSM	ENSMUSG00000003308.16	ENSMUST00000194542.6	3151	6	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_5	41.5143348736313	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGGCTCTGAATTAACCT	NA	False	NA	1	True	AATAAA	-18	NA	21150628	21141025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21142165_21142545_21142723_21142992_21143199_21144683_21145370_21148366_21149053_21150371
transcript_5764.known	chr10	-	6005	25	FSM	ENSMUSG00000034667.9	ENSMUST00000218004.2	6005	25	0	0	0	0	multi-exon	FALSE	canonical	3	537	junction_24	166.742560845221	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATTGGAGTGGGCCTTTT	NA	False	NA	-8	True	AATAAA	-16	NA	121462237	121423284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_121426126_121429571_121429629_121432088_121432161_121435491_121435540_121436696_121436813_121437147_121437265_121438135_121438326_121438933_121439220_121440250_121440490_121441486_121441557_121442145_121442241_121442625_121442746_121442903_121443049_121443415_121443541_121445028_121445092_121445601_121445641_121447380_121447618_121449127_121449297_121449391_121449577_121450909_121451129_121452519_121452590_121453036_121453094_121454997_121455081_121458762_121458897_121462009
transcript_57647.nic	chr9	-	1117	3	NIC	ENSMUSG00000003308.16	novel	317	2	NA	NA	20	0	combination_of_known_junctions	FALSE	canonical	2	10	junction_1	11.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CTCTGAAGAAGTTAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	21150608	21147418	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_21147613_21148366_21149053_21150371
transcript_57648.nnic	chr9	-	955	3	NNC	ENSMUSG00000003308.16	novel	3151	6	NA	NA	-37	-617	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	25.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGGCGTTTTGTCTGAAT	NA	False	NA	NA	False	NA	NA	NA	21150146	21148035	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_21148247_21148366_21149053_21150088
transcript_57650.known	chr9	-	2598	19	FSM	ENSMUSG00000035047.10	ENSMUST00000038671.10	2598	19	0	0	0	0	multi-exon	TRUE	canonical	3	91	junction_10	26.4070697604511	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTTCCCCATCCCTTCCCA	NA	False	NA	-9	True	AATAAA	-19	NA	21199265	21184752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21185545_21186564_21186664_21186732_21186798_21187139_21187271_21187350_21187478_21187680_21187770_21187855_21187932_21190656_21190828_21191459_21191556_21191658_21191786_21192337_21192466_21192957_21193036_21193110_21193208_21193344_21193395_21193469_21193525_21196536_21196664_21197874_21197981_21198994_21199069_21199155
transcript_57653.known	chr9	+	5951	10	FSM	ENSMUSG00000002820.7	ENSMUST00000065005.5	5951	10	0	0	0	0	multi-exon	FALSE	canonical	3	441	junction_8	36.048663953599	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAGGTCCTTGATGACATTT	8634	False	NA	NA	False	AATAAA	-25	NA	21176588	21189068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21177014_21178034_21178119_21178202_21178377_21179546_21179824_21179900_21179966_21182015_21182147_21183763_21183843_21183931_21184009_21184086_21184207_21184549
transcript_57654.nnic	chr9	+	1939	10	NNC	ENSMUSG00000002820.7	novel	5951	10	NA	NA	-42	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_8	152.03800694417	35	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGCCTGGCGTTGTTGA	8592	False	NA	21	True	GATAAA	-13	NA	21176546	21185041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_21177014_21178034_21178119_21178202_21178377_21179546_21179824_21179900_21179966_21182015_21182147_21183763_21183843_21183931_21184009_21184113_21184207_21184549
transcript_57663.known	chr9	+	2123	10	FSM	ENSMUSG00000002820.7	ENSMUST00000216826.2	2123	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	205.444234120438	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGCCTGGCGTTGTTGA	8637	False	NA	21	True	GATAAA	-13	NA	21176591	21185041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21177014_21178034_21178119_21178202_21178377_21179546_21179966_21180598_21180724_21182015_21182147_21183763_21183843_21183931_21184009_21184086_21184207_21184549
transcript_57664.known	chr9	-	691	3	FSM	ENSMUSG00000096472.3	ENSMUST00000213407.2	691	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	102.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCCAATGTGACCCAAGGC	NA	False	NA	NA	False	GGGGCT	-37	NA	21202703	21200280	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21200629_21202104_21202262_21202517
transcript_57665.known	chr9	-	1423	2	FSM	ENSMUSG00000096472.3	ENSMUST00000215619.2	1423	2	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_1	0	161	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGATGACTTCAGATTTAGG	NA	False	NA	NA	False	ATTAAA	-12	NA	21202604	21199705	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21200629_21202104
transcript_57667.known	chr9	-	1706	11	FSM	ENSMUSG00000003309.15	ENSMUST00000003397.9	1706	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	5.23545604508337	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTGTGAGTGTGCTTCTTG	1345	False	NA	-4	True	ATTAAA	-12	NA	21223607	21206756	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21207151_21207728_21207805_21209495_21209622_21210574_21210734_21213751_21213824_21213918_21214062_21216577_21216705_21216788_21217068_21220662_21220731_21220931_21221089_21223502
transcript_57670.known	chr9	+	3478	22	FSM	ENSMUSG00000057193.9	ENSMUST00000217461.2	3478	22	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	41.7821257447013	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGACCTGGTATGCTTAATA	6580	False	NA	19	True	AATAAA	-19	NA	21231993	21266324	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21232148_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
transcript_57672.known	chr9	+	3456	22	FSM	ENSMUSG00000057193.9	ENSMUST00000034697.8	3456	22	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_21	32.3776608971381	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTGACCTGGTATGCTTA	5736	False	NA	16	True	AATAAA	-16	NA	21249123	21266321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21249259_21249736_21249786_21253074_21253149_21253234_21253320_21253478_21253564_21253690_21253802_21253893_21253955_21254038_21254163_21254259_21254344_21254430_21254544_21256127_21256260_21256588_21256689_21256774_21256868_21257204_21257290_21257984_21258248_21258330_21258426_21259178_21259283_21259370_21259445_21259623_21259695_21259833_21259923_21263762_21263848_21264977
transcript_57677.nic	chr9	+	3545	21	NIC	ENSMUSG00000032178.15	novel	3513	21	NA	NA	4	0	combination_of_known_junctions	FALSE	canonical	3	965	junction_19	396.045376188133	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTCCGCTGAATGTAGAT	NA	False	NA	76	True	NA	NA	NA	21279170	21316617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
transcript_5768.nnic	chr10	-	1401	3	Antisense	novelGene_ENSMUSG00000047642.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_1	0.5	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGCCTTGGTCATGGTGTC	4716	False	NA	NA	False	NA	NA	NA	121493429	121490296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr10_-_121490799_121492206_121493021_121493344
transcript_57680.known	chr9	+	3549	20	FSM	ENSMUSG00000032178.15	ENSMUST00000067646.12	3549	20	0	0	0	0	multi-exon	FALSE	canonical	3	965	junction_18	395.630525194118	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATGCCTGTCTCAGGCCTG	NA	False	NA	115	True	AATAAA	-13	NA	21279166	21316656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315488_21315991
transcript_57682.known	chr9	+	3606	18	FSM	ENSMUSG00000032178.15	ENSMUST00000115414.3	3606	18	0	0	0	0	multi-exon	FALSE	canonical	3	922	junction_17	371.198684895057	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTACTTGAGTCTTCATTCA	NA	False	NA	32	True	AATACA	-21	NA	21279298	21313099	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21279396_21298995_21299094_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21311747
transcript_57686.known	chr9	+	3513	21	FSM	ENSMUSG00000032178.15	ENSMUST00000213518.2	3513	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_20	555.681284550776	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGCCTGTCTCAGGCCTGG	NA	False	NA	116	True	AATAAA	-14	NA	21279233	21316657	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21279396_21298995_21299094_21299407_21299447_21299819_21300050_21300601_21300780_21303590_21303739_21305006_21305099_21305490_21305587_21306126_21306239_21306666_21306765_21307315_21307428_21307512_21307624_21308764_21308965_21309264_21309433_21310420_21310547_21310711_21310889_21310980_21311138_21311255_21311310_21314431_21314798_21315355_21315479_21315991
transcript_57689.known	chr9	+	1316	10	FSM	ENSMUSG00000002825.9	ENSMUST00000002902.8	1316	10	0	0	0	0	multi-exon	FALSE	canonical	3	687	junction_5	65.5845510263914	578	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAAGCTCTTGTGTCTGTC	2369	False	NA	42	True	TATAAA	-28	NA	21323132	21331570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21323394_21323528_21323598_21323688_21323828_21328360_21328440_21328567_21328684_21329579_21329719_21330586_21330663_21330734_21330845_21330920_21331009_21331331
transcript_5771.known	chr10	+	3123	3	FSM	ENSMUSG00000053684.9	ENSMUST00000065600.8	3123	3	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_1	1	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACATGTATATATGGTTTTT	NA	False	NA	NA	False	AATAAA	-25	NA	121575841	121588770	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_121576116_121581235_121581522_121586207
transcript_57717.known	chr9	+	3502	21	FSM	ENSMUSG00000033335.18	ENSMUST00000072362.14	3502	21	0	0	0	0	multi-exon	FALSE	canonical	2	327	junction_20	112.703715555433	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACGTGTGTGGGCCTTTTGT	5879	False	NA	20	True	AATAAA	-30	NA	21336240	21418436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417628
transcript_57718.known	chr9	+	3510	21	FSM	ENSMUSG00000033335.18	ENSMUST00000173397.8	3510	21	0	0	0	0	multi-exon	TRUE	canonical	2	185	junction_20	132.122244531343	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTACGTGTGTGGGCCTTTT	5866	False	NA	18	True	AATAAA	-28	NA	21336227	21418434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21336553_21368798_21368873_21376877_21377028_21378827_21379032_21382638_21382738_21383908_21384070_21385827_21385971_21387768_21387905_21389576_21389645_21391702_21391842_21392628_21392716_21396946_21397018_21401038_21401091_21401953_21401966_21405799_21405914_21410553_21410664_21411553_21411666_21414837_21415003_21415725_21415959_21416759_21417012_21417631
transcript_57723.known	chr9	-	1378	4	FSM	ENSMUSG00000032180.12	ENSMUST00000034698.9	1378	4	0	0	0	0	multi-exon	FALSE	canonical	3	533	junction_2	14.8548533034381	709	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTGCCTGGTGACTGGGCT	NA	False	NA	-5	True	AATAAA	-19	NA	21421548	21418850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21419688_21420226_21420411_21420549_21420648_21421289
transcript_57725.known	chr9	-	1013	4	FSM	ENSMUSG00000032180.12	ENSMUST00000214576.2	1013	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	250.551835399827	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCCCCCCACCCTCCA	NA	False	NA	NA	False	NA	NA	NA	21421530	21419162	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21419688_21420226_21420411_21420584_21420648_21421289
transcript_57726.known	chr9	-	1213	3	FSM	ENSMUSG00000032180.12	ENSMUST00000214285.2	1213	3	0	0	0	0	multi-exon	FALSE	canonical	2	30	junction_2	267.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATAGTGCCTGGTGACTGGG	NA	False	NA	-7	True	AATAAA	-17	NA	21421483	21418852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21419688_21420226_21420411_21421289
transcript_57727.known	chr9	-	1454	3	FSM	ENSMUSG00000032180.12	ENSMUST00000213316.2	1454	3	0	0	0	0	multi-exon	FALSE	canonical	3	564	junction_2	0.5	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCCTGGTGACTGGGCTTA	NA	False	NA	-3	True	AATAAA	-21	NA	21421483	21418848	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21419688_21420226_21420648_21421289
transcript_57728.known	chr9	+	3220	16	FSM	ENSMUSG00000032185.16	ENSMUST00000034703.15	3220	16	0	0	0	0	multi-exon	FALSE	canonical	3	1025	junction_5	67.5234938537856	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTGCAAAACAGCAGGGTA	NA	False	NA	20	True	AATAAA	-22	NA	21458189	21500763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21458527_21480750_21480877_21485782_21485890_21486709_21486815_21490694_21490806_21491604_21491783_21494334_21494426_21494806_21494889_21497462_21497549_21497740_21497831_21498196_21498335_21498420_21498511_21498586_21498700_21498803_21498882_21499146_21499216_21499344
transcript_57730.nic	chr9	-	1968	10	NIC	ENSMUSG00000032182.16	novel	2014	9	NA	NA	-12	0	combination_of_known_junctions	FALSE	canonical	3	41	junction_9	17.7478915457862	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTCACGCCCATGGTG	6056	False	NA	-20	True	AATAAA	-13	NA	21504136	21499981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504022
transcript_57731.known	chr9	-	1894	10	FSM	ENSMUSG00000032182.16	ENSMUST00000078572.9	1894	10	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_9	21.338541031039	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACGCCCATGGTGACCA	6124	False	NA	-16	True	AATAAA	-17	NA	21504068	21499977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504032
transcript_57732.nic	chr9	-	1151	10	NIC	ENSMUSG00000032182.16	novel	1894	10	NA	NA	5	-744	combination_of_known_junctions	FALSE	canonical	3	41	junction_9	17.7478915457862	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGATCCAGAGAATTTATA	6129	False	NA	NA	False	NA	NA	NA	21504063	21500725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504022
transcript_57734.known	chr9	-	2014	9	FSM	ENSMUSG00000032182.16	ENSMUST00000180365.9	2014	9	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_8	18.6463803457937	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTCACGCCCATGGTG	6086	False	NA	-20	True	AATAAA	-13	NA	21504106	21499981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504022
transcript_57735.nic	chr9	-	2050	9	NIC	ENSMUSG00000032182.16	novel	1894	10	NA	NA	-24	0	intron_retention	FALSE	canonical	3	27	junction_8	22.544400635191	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCACGCCCATGGTGACCA	6044	False	NA	-16	True	AATAAA	-17	NA	21504148	21499977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504032
transcript_57736.known	chr9	-	1883	9	FSM	ENSMUSG00000032182.16	ENSMUST00000213809.2	1883	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	29.6690073982936	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATGTCACGCCCATGGTG	6080	False	NA	-20	True	AATAAA	-13	NA	21504112	21499981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21500855_21500930_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21504022
transcript_5774.known	chr10	+	2968	3	FSM	ENSMUSG00000053684.9	ENSMUST00000136432.2	2968	3	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	61	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTTTTCTGGTCAAGCA	NA	False	NA	NA	False	AATAAA	-38	NA	121575842	121588783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_121576116_121581402_121581522_121586207
transcript_57741.nic	chr9	-	1302	9	NIC	ENSMUSG00000032182.16	novel	1894	10	NA	NA	-24	-744	intron_retention	FALSE	canonical	3	27	junction_8	22.544400635191	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGTGATCCAGAGAATTTATA	6044	False	NA	NA	False	NA	NA	NA	21504148	21500725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_21501057_21501141_21501325_21501406_21501574_21501651_21501769_21502722_21502811_21503195_21503277_21503356_21503515_21503823_21503885_21504032
transcript_57745.known	chr9	+	6376	34	FSM	ENSMUSG00000032187.17	ENSMUST00000098948.10	6376	34	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_28	138.291543357457	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTGTGCCTATAAGCCCCA	1237	False	NA	NA	False	AATAAA	-20	NA	21527464	21615526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590444_21597308_21597572_21611095_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
transcript_57746.known	chr9	+	5405	34	FSM	ENSMUSG00000032187.17	ENSMUST00000174008.8	5405	34	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_29	114.960846930185	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCACTGGCTCCCTGGACTC	1332	False	NA	22	True	AATAAA	-19	NA	21527559	21614662	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720_21553889_21553996_21554048_21558646_21558778_21558913_21558972_21566922_21567045_21570121_21570273_21572003_21572168_21576144_21576212_21577059_21577171_21578461_21578705_21580230_21580345_21580844_21580953_21581779_21581867_21583338_21583386_21584465_21584633_21586362_21586527_21588745_21588974_21589611_21589690_21590224_21590444_21597317_21597572_21611098_21611205_21611331_21611434_21612149_21612283_21612383_21612527_21614231
transcript_57747.nic	chr9	+	1983	10	ISM	ENSMUSG00000032187.17	ENSMUST00000174008.8	5405	34	-61	60778	34	-43640	5prime_fragment	FALSE	canonical	3	544	junction_6	59.085625249388	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGGTTCGCTGGGCCTGAC	1271	False	NA	51	True	NA	NA	NA	21527498	21553884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_21527697_21544100_21544351_21546045_21546179_21546831_21547237_21547478_21547578_21548574_21548834_21550009_21550137_21550513_21550688_21552207_21552382_21553720
transcript_57749.known	chr9	+	4627	18	FSM	ENSMUSG00000032193.10	ENSMUST00000034713.9	4627	18	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_7	34.4140270749526	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGTCATCCTTATGTGTG	1773	False	NA	16	True	ATTAAA	-15	NA	21634778	21661215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650277_21650681_21650854_21650944_21651170_21653482_21653602_21653952_21654093_21655217_21655360_21655525_21655682_21657027_21657202_21657657_21657736_21658444_21658603_21659436
transcript_57750.known	chr9	+	2854	10	FSM	ENSMUSG00000032193.10	ENSMUST00000217111.2	2854	10	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_7	24.2807651352991	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	1929	False	NA	NA	False	NA	NA	NA	21634934	21652298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169_21649290_21650150_21650277_21650681_21650854_21650944
transcript_57752.known	chr9	+	1739	7	FSM	ENSMUSG00000032193.10	ENSMUST00000214359.2	1739	7	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_4	14.8295875420278	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATAAAAAAAAATAACAGAA	1931	False	NA	NA	False	NA	NA	NA	21634936	21649828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21635141_21643042_21643166_21643607_21643731_21644786_21645171_21646532_21646656_21648515_21648639_21649169
transcript_57753.known	chr9	-	1366	5	FSM	ENSMUSG00000074476.7	ENSMUST00000098942.6	1366	5	0	0	0	0	multi-exon	FALSE	canonical	3	1938	junction_4	159.647071692531	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAAGTGTGTGTGCAG	NA	False	NA	NA	False	NA	NA	NA	21671599	21666737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21667592_21668412_21668490_21668585_21668691_21668980_21669126_21671414
transcript_5776.known	chr10	-	1546	7	FSM	ENSMUSG00000034620.18	ENSMUST00000038772.13	1546	7	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	137.068920214937	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTATTCATAAGTGTAA	NA	False	NA	-10	True	AATAAA	-19	NA	121933061	121917164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_121917595_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932000_121932252_121932367_121932804
transcript_57766.known	chr9	-	627	4	FSM	ENSMUSG00000074476.7	ENSMUST00000216057.2	627	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	994.029174622154	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGCGTTCATTGATTTAT	NA	False	NA	-22	True	ATTAAA	-12	NA	21671599	21667399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21667592_21668585_21668691_21668980_21669126_21671414
transcript_5778.nnic	chr10	-	1365	6	NNC	ENSMUSG00000034620.18	novel	1546	7	NA	NA	-16	0	at_least_one_novel_splicesite	FALSE	canonical	2	10	junction_1	114.634026362158	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTATTCATAAGTGTAA	NA	False	NA	-10	True	AATAAA	-19	NA	121933077	121917164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_121917512_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932000_121932804
transcript_57782.known	chr9	-	1696	3	FSM	ENSMUSG00000074476.7	ENSMUST00000217382.2	1696	3	0	0	0	0	multi-exon	FALSE	canonical	3	1938	junction_2	208.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATGTTTTGTCTGCATGTGT	NA	False	NA	0	True	NA	NA	NA	21671578	21667303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21668691_21668980_21669126_21671414
transcript_57783.nic	chr9	-	3056	22	ISM	ENSMUSG00000032198.10	ENSMUST00000217515.2	3130	24	-17	5671	0	-5671	5prime_fragment	FALSE	canonical	3	152	junction_8	19.8113552266968	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTAGTTTATGTGTACAT	6256	False	NA	NA	False	NA	NA	NA	21763931	21741212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_-_21741674_21742328_21742491_21742707_21742940_21743149_21743233_21744135_21744242_21744330_21744470_21744659_21744731_21744819_21744938_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
transcript_57784.nnic	chr9	-	1906	15	NNC	ENSMUSG00000032198.10	novel	1868	15	NA	NA	0	3	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	52.93955929903	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGCCTCTGTTCTCTTTT	6256	False	NA	-3	True	NA	NA	NA	21763931	21748641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_21748864_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
transcript_57785.known	chr9	-	1868	15	FSM	ENSMUSG00000032198.10	ENSMUST00000213296.2	1868	15	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	50.5494807094989	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGATTGCCTCTGTTCTCT	6275	False	NA	-6	True	NA	NA	NA	21763912	21748644	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21748848_21750046_21750210_21750438_21750533_21750648_21750777_21750920_21751069_21751167_21751249_21752788_21752939_21753205_21753273_21754228_21754315_21755502_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
transcript_57788.known	chr9	-	1324	6	FSM	ENSMUSG00000032198.10	ENSMUST00000213775.2	1324	6	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_1	8.83176086632785	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAGAGAACTGGGTAAT	6275	False	NA	NA	False	NA	NA	NA	21763912	21754926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21755716_21756739_21756870_21757056_21757126_21757794_21757971_21758480_21758569_21763840
transcript_57789.known	chr9	-	3835	5	FSM	ENSMUSG00000019066.14	ENSMUST00000115351.10	3835	5	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_4	8.45576726264388	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTGTATATTGCTTAATTT	2233	False	NA	NA	False	AATAAA	-25	NA	21829488	21818786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21821968_21825940_21826066_21826158_21826278_21827000_21827240_21829317
transcript_57792.known	chr9	-	862	4	FSM	ENSMUSG00000040883.19	ENSMUST00000238930.2	862	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_3	87.3473271231327	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATGGCCATGGTCATTTTT	NA	False	NA	-7	True	AATAAA	-12	NA	21838831	21832305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21832646_21837286_21837451_21837544_21837654_21838582
transcript_57794.known	chr9	+	2626	10	FSM	ENSMUSG00000040563.14	ENSMUST00000046371.13	2626	10	0	0	0	0	multi-exon	TRUE	canonical	3	9	junction_8	8.89999306422257	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTTTGGCCTTCTGCCTG	97	False	NA	NA	False	AATAAA	-16	NA	21848328	21860200	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21848455_21849690_21849861_21850594_21850675_21851980_21852170_21852297_21852434_21854646_21854919_21855691_21855869_21858241_21858365_21858676_21858729_21858899
transcript_57796.known	chr9	+	1838	2	FSM	ENSMUSG00000051238.7	ENSMUST00000053583.7	1838	2	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGGACTCTGGTGGTCTG	NA	False	NA	8	True	NA	NA	NA	21867050	21869560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21867301_21867972
transcript_57799.known	chr9	-	2197	13	FSM	ENSMUSG00000039632.14	ENSMUST00000044926.6	2197	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	2.13924960883224	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGGTATTCACCTCTTT	4204	False	NA	NA	False	AATAAA	-16	NA	21913930	21901166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21901541_21901692_21901778_21902097_21902254_21902903_21903061_21903143_21903305_21904167_21904321_21904833_21904957_21906108_21906235_21906322_21906425_21906503_21906675_21909181_21909260_21909340_21909463_21913541
transcript_5780.known	chr10	-	4793	6	FSM	ENSMUSG00000034620.18	ENSMUST00000140299.3	4793	6	0	0	0	0	multi-exon	FALSE	canonical	3	258	junction_5	21.4513402844671	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATTGGTTGTGTATCTAA	NA	False	NA	NA	False	ATTAAA	-13	NA	121933276	121914018	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_121917595_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932000_121932804
transcript_57804.known	chr9	+	2012	18	FSM	ENSMUSG00000003402.15	ENSMUST00000003493.9	2012	18	0	0	0	0	multi-exon	TRUE	canonical	3	461	junction_11	125.012497645132	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTGGCTGTTTTTTAAT	NA	False	NA	20	True	AATAAA	-16	NA	21914313	21925518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922872_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
transcript_57805.known	chr9	+	1983	18	FSM	ENSMUSG00000003402.15	ENSMUST00000115331.10	1983	18	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_11	154.653737577573	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGTGGCTGTTTTTTA	NA	False	NA	18	True	AATAAA	-14	NA	21914361	21925516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_21914385_21914694_21914834_21914972_21915090_21915793_21915890_21915986_21916045_21917835_21917954_21919539_21919670_21921452_21921538_21921819_21921899_21922462_21922550_21922733_21922893_21922969_21923067_21923329_21923400_21923514_21923605_21923974_21924050_21924131_21924232_21924311_21924463_21925207
transcript_5781.nic	chr10	-	1579	6	NIC	ENSMUSG00000034620.18	novel	1546	7	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_5	112.932546238894	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCATGTATTCATAAGTGTAA	NA	False	NA	-10	True	AATAAA	-19	NA	121933075	121917164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_121917595_121924783_121924955_121926364_121926680_121930494_121930598_121931843_121932133_121932804
transcript_57813.known	chr9	-	1673	9	FSM	ENSMUSG00000066839.13	ENSMUST00000098937.10	1673	9	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_8	44.5222907654132	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5896	False	NA	-9	True	AATAAA	-15	NA	21996723	21983541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995505_21996644
transcript_57814.known	chr9	-	1676	9	FSM	ENSMUSG00000066839.13	ENSMUST00000180180.8	1676	9	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_8	49.2772767104677	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5885	False	NA	-9	True	AATAAA	-15	NA	21996734	21983541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21995318_21995505_21996652
transcript_57815.known	chr9	-	1462	8	FSM	ENSMUSG00000066839.13	ENSMUST00000179422.8	1462	8	0	0	0	0	multi-exon	TRUE	canonical	3	16	junction_7	78.0418516710419	64	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCCCTGGCCCTGTGGCTTC	5921	False	NA	-9	True	AATAAA	-15	NA	21996698	21983541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21983877_21984277_21984384_21984721_21984871_21984978_21985037_21985886_21986111_21987523_21987942_21989443_21989562_21996644
transcript_57821.known	chr9	-	893	1	FSM	ENSMUSG00000066839.13	ENSMUST00000217445.2	893	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGTT	5888	False	NA	NA	False	NA	NA	NA	21996731	21995838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_21995800_21996700
transcript_57823.known	chr9	-	567	3	FSM	ENSMUSG00000013822.8	ENSMUST00000214394.2	567	3	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	229.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTTCGTGGCTGCAGATGT	7993	False	NA	NA	False	NA	NA	NA	22028419	22024731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_22024976_22025103_22025240_22028232
transcript_57824.known	chr9	-	888	3	FSM	ENSMUSG00000013822.8	ENSMUST00000013966.8	888	3	0	0	0	0	multi-exon	FALSE	canonical	3	357	junction_2	52.5	223	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCCGCCGCTGTACTTCTT	7944	False	NA	-8	True	AATAAA	-15	NA	22028468	22024286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_22024976_22025103_22025240_22028405
transcript_57825.nnic	chr9	-	1508	6	NIC	ENSMUSG00000001348.16	novel	1447	6	NA	NA	4	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_5	116.864023548738	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	9078	False	NA	-23	True	AATAAA	-17	NA	22042945	22038026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22041818_22041905_22042796
transcript_57826.nnic	chr9	-	1807	6	NNC	ENSMUSG00000001348.16	novel	1447	6	NA	NA	-508	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_5	93.858617079094	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	8388	False	NA	-23	True	AATAAA	-17	NA	22043635	22038026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22043032_22043161_22043229
transcript_57827.nnic	chr9	-	1574	6	NNC	ENSMUSG00000001348.16	novel	1376	5	NA	NA	-65	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_5	119.877604246999	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	4951	False	NA	-23	True	AATAAA	-17	NA	22047072	22038026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22045889_22046027_22046908
transcript_57828.known	chr9	-	1349	5	FSM	ENSMUSG00000001348.16	ENSMUST00000115315.3	1349	5	0	0	0	0	multi-exon	TRUE	canonical	3	21	junction_4	98.7734149455206	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	4541	False	NA	-23	True	AATAAA	-17	NA	22041894	22038026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22041818
transcript_57829.known	chr9	-	1419	5	FSM	ENSMUSG00000001348.16	ENSMUST00000213815.2	1419	5	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	92.7425873048623	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCCAGAATGGGTGTGT	9074	False	NA	-30	True	AATAAA	-10	NA	22042949	22038033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22042796
transcript_57830.nnic	chr9	-	1476	5	NNC	ENSMUSG00000001348.16	novel	1349	5	NA	NA	23	0	at_least_one_novel_splicesite	FALSE	canonical	3	56	junction_4	83.7048385698222	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAATGGGTGTGTCATCAAG	8935	False	NA	-23	True	AATAAA	-17	NA	22043088	22038026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22042885
transcript_57831.known	chr9	-	1376	5	FSM	ENSMUSG00000001348.16	ENSMUST00000165735.9	1376	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_4	107.395006867172	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGTGTCATCAAGGTTA	5016	False	NA	-19	True	AATAAA	-21	NA	22047007	22038022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22046908
transcript_57832.known	chr9	+	1474	1	FSM	ENSMUSG00000111856.2	ENSMUST00000215411.2	1474	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAACAATCCGATGTC	NA	False	NA	NA	False	AATAAA	-16	NA	22028623	22030097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_22028600_22030100
transcript_57833.known	chr9	-	1356	5	FSM	ENSMUSG00000001348.16	ENSMUST00000069330.14	1356	5	0	0	0	0	multi-exon	FALSE	canonical	3	129	junction_4	52.4374627532645	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGGTGTGTCATCAAGGTTA	8912	False	NA	-19	True	AATAAA	-21	NA	22043111	22038022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22043032
transcript_57834.known	chr9	-	1447	6	FSM	ENSMUSG00000001348.16	ENSMUST00000217643.2	1447	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	116.082039954508	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTCCAGAATGGGTGTGT	8896	False	NA	-30	True	AATAAA	-10	NA	22043127	22038033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_22038559_22038970_22039317_22040826_22040955_22041158_22041426_22041818_22041905_22043032
transcript_57835.known	chr9	+	695	2	FSM	ENSMUSG00000010607.9	ENSMUST00000123680.2	695	2	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_1	0	342	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTCTTCTAAGATTTGTT	NA	False	NA	44	True	AATAAA	-44	NA	22068141	22069654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_22068210_22069027
transcript_57836.known	chr9	+	676	2	FSM	ENSMUSG00000010607.9	ENSMUST00000148088.2	676	2	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	0	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGAGGAACACGACCAGCC	NA	False	NA	11	True	AATAAA	-11	NA	22068241	22069621	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_22068324_22069027
transcript_57838.known	chr9	-	615	1	FSM	ENSMUSG00000061167.10	ENSMUST00000088480.4	615	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	126	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACGTGATATTTGTAAAA	NA	False	NA	NA	False	NA	NA	NA	22097517	22096902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_22096900_22097500
transcript_57840.known	chr9	+	1425	6	FSM	ENSMUSG00000057982.9	ENSMUST00000072465.9	1425	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_5	52.9694251431899	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGCCTTGGTTGTGTTTTG	797	False	NA	14	True	NA	NA	NA	22137066	22154650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837_22150550_22154329
transcript_57841.known	chr9	+	1766	5	FSM	ENSMUSG00000057982.9	ENSMUST00000213371.2	1766	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	49.3273504254992	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCCTGGCCGGCCATGC	749	False	NA	34	True	NA	NA	NA	22137018	22150989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_22137129_22146315_22146443_22147323_22147591_22148970_22149081_22149837
transcript_57843.known	chr9	+	1313	5	FSM	ENSMUSG00000057982.9	ENSMUST00000215618.2	1313	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_4	21.3717102731625	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGGACAGACTAAATAATGC	778	False	NA	NA	False	NA	NA	NA	22137047	22150739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_22137129_22146315_22146443_22147497_22147591_22148970_22149081_22149837
transcript_57850.known	chr9	+	597	2	FSM	ENSMUSG00000057982.9	ENSMUST00000213350.2	597	2	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTCTTACATGCTCAAGCTA	749	False	NA	NA	False	NA	NA	NA	22137018	22146802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_22137129_22146315
transcript_57851.known	chr9	-	3574	5	FSM	ENSMUSG00000062794.9	ENSMUST00000086281.5	3574	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	12.747548783982	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTAGTCTGAGATGTAG	NA	False	NA	NA	False	AATAAA	-16	NA	22171191	22158725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_22161837_22162823_22162928_22165150_22165244_22169340_22169468_22171052
transcript_57852.known	chr9	-	3238	8	FSM	ENSMUSG00000066829.8	ENSMUST00000086278.7	3238	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_6	8.19407451411428	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCAGTGTAAATTAAGCATT	NA	False	NA	-8	True	AATAAA	-17	NA	22218934	22188043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_22190577_22191748_22191856_22194463_22194557_22195312_22195440_22201834_22201939_22209712_22209806_22216807_22216899_22218844
transcript_57855.known	chr9	-	4605	24	FSM	ENSMUSG00000036777.9	ENSMUST00000040912.9	4605	24	0	0	0	0	multi-exon	FALSE	canonical	3	398	junction_4	55.8021416884086	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCATCAGTTATTTAAGAAAT	7183	False	NA	-3	True	AATAAA	-20	NA	22300484	22243307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_22244470_22245297_22245471_22249227_22249336_22250297_22250385_22262215_22262329_22263171_22263194_22263509_22263549_22264078_22264136_22264625_22264675_22267347_22267475_22269415_22269599_22269908_22270045_22271705_22271854_22272117_22272264_22273981_22274218_22275285_22275397_22279681_22279809_22283451_22283560_22284436_22284628_22286222_22286437_22287432_22287819_22291345_22291652_22293466_22293624_22300265
transcript_57856.known	chr9	-	1134	6	FSM	ENSMUSG00000032239.11	ENSMUST00000034763.10	1134	6	0	0	0	0	multi-exon	FALSE	canonical	3	365	junction_2	10.1311401135312	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTAGTCATTATTAATACAG	9510	False	NA	-1	True	AATAAA	-23	NA	22379644	22359606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_22360151_22361097_22361160_22365074_22365167_22368668_22368799_22370006_22370038_22379369
transcript_57859.known	chr9	+	3382	22	FSM	ENSMUSG00000035919.17	ENSMUST00000039798.16	3382	22	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	13.43515542748	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACTGGACTGAATTTATAA	NA	False	NA	3	True	AATAAA	-20	NA	22387010	22799576	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_22387352_22402113_22402237_22408004_22408156_22415340_22415406_22425275_22425390_22479000_22479176_22486406_22486492_22489932_22490117_22490759_22490890_22540237_22540417_22546906_22546984_22550025_22550080_22555040_22555144_22557259_22557365_22566520_22566662_22570345_22570442_22582080_22582254_22590207_22590361_22705046_22705230_22723616_22723840_22798876_22798985_22799157
transcript_57862.known	chr9	-	3489	23	FSM	ENSMUSG00000043067.16	ENSMUST00000142064.8	3489	23	0	0	0	0	multi-exon	TRUE	canonical	3	87	junction_1	49.1071732317176	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCATGTGTTTTCTGCC	NA	False	NA	-5	True	AATAAA	-19	NA	24414436	24323073	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_24324283_24325533_24325720_24332376_24332503_24333555_24333656_24334308_24334484_24336021_24336142_24337429_24337455_24341726_24341777_24343655_24343728_24345634_24345737_24349924_24350006_24350424_24350485_24352050_24352138_24359082_24359161_24361951_24362052_24365101_24365194_24373872_24373931_24385069_24385164_24386628_24386750_24393224_24393363_24396309_24396398_24397000_24397026_24414134
transcript_57863.nic	chr9	-	2496	16	ISM	ENSMUSG00000043067.16	ENSMUST00000115277.9	4747	23	25292	1466	25292	-1191	3prime_fragment	FALSE	canonical	3	255	junction_7	20.2084690717091	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGTGTGTAGAGTGAGTA	NA	False	NA	NA	False	NA	NA	NA	24373918	24324537	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_-_24325720_24332376_24332503_24333555_24333656_24334308_24334484_24336021_24336142_24337429_24337455_24341726_24341777_24343655_24343728_24345634_24345737_24349924_24350006_24350424_24350485_24352050_24352138_24359082_24359161_24361951_24362052_24365101_24365194_24373872
transcript_57868.known	chr9	+	2533	14	FSM	ENSMUSG00000001833.18	ENSMUST00000115272.9	2533	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	485.66204432895	802	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCAGTGTCTTGTATATTCT	NA	False	NA	22	True	AATAAA	-22	NA	25163734	25219867	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_25163996_25176597_25176603_25176689_25176793_25188839_25188947_25197963_25198065_25199479_25199615_25204980_25205099_25207690_25207784_25209107_25209205_25210787_25210840_25212707_25212834_25215012_25215149_25217421_25217562_25218808
transcript_5787.known	chr10	+	6369	10	FSM	ENSMUSG00000034613.13	ENSMUST00000067918.12	6369	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	11.6428327977153	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGTTTTGGGTTTTTTGTTG	NA	False	NA	NA	False	NA	NA	NA	122514686	122781700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_122515336_122618087_122618251_122638139_122638485_122647351_122647465_122692966_122693052_122714413_122714533_122739996_122740061_122743411_122743520_122756598_122756751_122777129
transcript_5788.known	chr10	-	11525	22	FSM	ENSMUSG00000020124.11	ENSMUST00000220377.2	11525	22	0	0	0	0	multi-exon	TRUE	canonical	3	236	junction_15	99.6636747895759	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCGCTATATCTGTACATTTA	NA	False	NA	NA	False	AATAAA	-29	NA	123032900	122940910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122988945_122989033_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
transcript_57881.known	chr9	+	1685	4	FSM	ENSMUSG00000001833.18	ENSMUST00000215721.2	1685	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	123.205338989654	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGATAGTGTGGATCTTAT	NA	False	NA	NA	False	ATTAAA	-18	NA	25163943	25188115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_25163996_25175498_25175504_25176689_25176793_25186590
transcript_57882.known	chr9	-	2859	11	FSM	ENSMUSG00000031969.17	ENSMUST00000060513.8	2859	11	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_10	23.6862829502647	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATTTATTTTCATGTT	9248	False	NA	NA	False	AGTAAA	-25	NA	26910845	26885439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903557_26910689
transcript_57883.nic	chr9	-	2068	11	NIC	ENSMUSG00000031969.17	novel	2859	11	NA	NA	-5	408	combination_of_known_junctions	FALSE	canonical	3	47	junction_10	61.1735236846791	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAATTTCTCCTAAGGCAGT	9243	False	NA	-1	True	ATTAAA	-27	NA	26910850	26886263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903585_26910689
transcript_57886.nic	chr9	-	1882	11	NIC	ENSMUSG00000031969.17	novel	2859	11	NA	NA	-5	222	combination_of_known_junctions	FALSE	canonical	3	47	junction_10	61.1735236846791	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGGATTTTTTATTTGG	9243	False	NA	-12	True	AATAAA	-27	NA	26910850	26886449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_26887057_26888851_26888955_26889606_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903585_26910689
transcript_5789.known	chr10	-	4666	21	FSM	ENSMUSG00000020124.11	ENSMUST00000020334.9	4666	21	0	0	0	0	multi-exon	FALSE	canonical	3	255	junction_15	80.7788802843912	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTAGTCTTTTATTTCTTA	NA	False	NA	-1	True	AATAAA	-16	NA	123032858	122947640	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_122949593_122955013_122955103_122957476_122957581_122959840_122959991_122960418_122960535_122960868_122960940_122961317_122961591_122961716_122961833_122963582_122963775_122963868_122963964_122964053_122964138_122966845_122967071_122967156_122967316_122968860_122969035_122982698_122982844_122999497_122999560_123004131_123004278_123007004_123007132_123011747_123011879_123017577_123017706_123032731
transcript_57894.nic	chr9	-	2530	10	NIC	ENSMUSG00000031969.17	novel	2859	11	NA	NA	-12	222	intron_retention	FALSE	canonical	3	181	junction_9	24.6986779273309	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTGGATTTTTTATTTGG	9219	False	NA	-12	True	AATAAA	-27	NA	26910874	26886449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_26887057_26888851_26889760_26890280_26890379_26890471_26890608_26896758_26896897_26901415_26901493_26901878_26901989_26902535_26902706_26903455_26903557_26910689
transcript_57902.known	chr9	+	918	8	FSM	ENSMUSG00000035443.11	ENSMUST00000039161.10	918	8	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_7	172.705955134082	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGAAGTGTTTTCTTCT	NA	False	NA	34	True	AATAAA	-15	NA	26911017	26918630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096_26918248_26918453
transcript_57904.nnic	chr9	+	985	8	NNC	ENSMUSG00000035443.11	novel	918	8	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	231.197945051245	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTTGGAAGTGTTTTCTTCT	NA	False	NA	34	True	AATAAA	-15	NA	26910969	26918630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_26911081_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096_26918248_26918453
transcript_57909.known	chr9	+	775	7	FSM	ENSMUSG00000035443.11	ENSMUST00000213770.2	775	7	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_6	112.305634567263	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGTTGGAAGTGTTTTC	NA	False	NA	30	True	AATAAA	-11	NA	26911005	26918626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_26911062_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
transcript_57911.nnic	chr9	+	830	7	NNC	ENSMUSG00000035443.11	novel	775	7	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_1	220.761560663687	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGGTTGGAAGTGTTTTC	NA	False	NA	30	True	AATAAA	-11	NA	26910969	26918626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_26911081_26911246_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918453
transcript_57916.known	chr9	+	774	5	FSM	ENSMUSG00000035443.11	ENSMUST00000214910.2	774	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	235.013829380315	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTTATCATTGAGTTTTA	NA	False	NA	3	True	AATAAA	-17	NA	26911005	26917227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_26911062_26911246_26911353_26914892_26915061_26916441_26916511_26916852
transcript_5792.known	chr10	-	903	6	FSM	ENSMUSG00000025436.13	ENSMUST00000026504.13	903	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	67.2767418949521	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATCTGTTTGACACATTACT	NA	False	NA	-26	True	AATAAA	-19	NA	126737224	126704295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_126704595_126727508_126727593_126730093_126730232_126734755_126734838_126735449_126735496_126736970
transcript_57921.known	chr9	+	853	1	FSM	ENSMUSG00000035443.11	ENSMUST00000214458.2	853	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	4	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAATGCCT	NA	False	NA	NA	False	NA	NA	NA	26911023	26911876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_26911000_26911900
transcript_57922.known	chr9	+	1107	7	FSM	ENSMUSG00000035443.11	ENSMUST00000213683.2	1107	7	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_6	186.06510210736	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAAGTGTTTTCTTCTAA	NA	False	NA	36	True	AATAAA	-17	NA	26911015	26918632	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_26911353_26914892_26915075_26916441_26916511_26916852_26916946_26917647_26917744_26918096_26918248_26918453
transcript_57923.known	chr9	-	3575	6	FSM	ENSMUSG00000031988.11	ENSMUST00000034470.11	3575	6	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_3	12.273548794053	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGATTCTGTGGTCTTTCCT	NA	False	NA	-3	True	ATTAAA	-42	NA	26941361	26919066	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_26921334_26921659_26921803_26924020_26924197_26926452_26926618_26930613_26930771_26940694
transcript_57926.known	chr9	+	5149	35	FSM	ENSMUSG00000035024.17	ENSMUST00000216677.2	5149	35	0	0	0	0	multi-exon	FALSE	canonical	3	212	junction_3	21.5907395566265	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAACCTAGCATTTATTATAA	NA	False	NA	NA	False	AATAAA	-16	NA	26941944	27006608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_26942127_26948280_26948436_26952688_26952852_26955791_26955977_26956346_26956518_26956823_26956886_26957200_26957289_26959450_26959585_26961592_26961666_26962657_26962784_26962914_26963168_26963619_26963677_26963889_26963962_26966767_26966842_26967339_26967475_26969156_26969378_26974559_26974752_26975065_26975164_26975272_26975389_26978238_26978347_26980963_26981079_26981170_26981279_26983020_26983260_26984018_26984099_26993701_26993840_26994125_26994260_26994479_26994677_26997235_26997347_26998677_26998861_26999274_26999493_26999728_26999863_27000595_27000674_27005696_27005769_27005856_27005918_27005992
transcript_57927.nic	chr9	+	531	4	ISM	ENSMUSG00000035024.17	ENSMUST00000216677.2	5149	35	75	50711	75	-7352	5prime_fragment	FALSE	canonical	3	212	junction_3	15.9373774505092	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGACCACTCCAAGAGTTCTA	NA	False	NA	NA	False	AAGAAA	-4	NA	26942019	26955897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_26942127_26948280_26948436_26952688_26952852_26955791
transcript_5793.known	chr10	-	1043	6	FSM	ENSMUSG00000025436.13	ENSMUST00000168520.3	1043	6	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	12.3515181253156	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACTTATTTTTTGGCTCTT	NA	False	NA	0	True	AATAAA	-25	NA	126737217	126723117	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_126723564_126727508_126727593_126730093_126730232_126734755_126734838_126735449_126735496_126736970
transcript_57931.nnic	chr9	-	2039	9	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	4298	0	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_8	53.8573056789884	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	-1	True	ATTAAA	-14	NA	27033548	27008679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27033348
transcript_57932.known	chr9	-	1942	9	FSM	ENSMUSG00000031990.16	ENSMUST00000034472.16	1942	9	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_8	42.8396355610082	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCATGTTTGTATTTTTTTT	NA	False	NA	-1	True	ATTAAA	-14	NA	27066689	27008679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
transcript_57935.nnic	chr9	-	1812	9	NNC	ENSMUSG00000031990.16	novel	1942	9	NA	NA	4298	-227	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_8	53.8573056789884	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TACAGTGTTTCAAAACGTAT	NA	False	NA	NA	False	TATAAA	-18	NA	27033548	27008906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_27009698_27010007_27010063_27010140_27010271_27011378_27011479_27012533_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27033348
transcript_57940.known	chr9	-	1234	5	FSM	ENSMUSG00000031990.16	ENSMUST00000167074.2	1234	5	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_4	57.1401785086466	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAGAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	27066714	27011963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_27012737_27013159_27013313_27016802_27016917_27017644_27017711_27066586
transcript_57941.known	chr9	+	2857	15	FSM	ENSMUSG00000034275.19	ENSMUST00000115247.8	2857	15	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_12	6.52311431818907	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTCTCCATTTATCTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	27210523	27241431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_27210814_27220699_27220898_27222862_27223010_27228650_27228803_27229104_27229223_27230501_27230644_27230819_27230966_27233468_27233612_27233912_27234054_27234139_27234257_27234504_27234656_27235472_27235585_27238141_27238318_27239775_27240003_27240834
transcript_57943.nnic	chr9	-	3139	19	NNC	ENSMUSG00000031995.10	novel	3259	19	NA	NA	14049	0	at_least_one_novel_splicesite	TRUE	canonical	2	15	junction_18	142.806190428466	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTTCTTGCTATACT	1323	False	NA	0	True	AGTAAA	-24	NA	31028974	31000697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011567_31011681_31011792_31014171_31014270_31014981_31015122_31017309_31017551_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31028786
transcript_57944.known	chr9	-	3259	19	FSM	ENSMUSG00000031995.10	ENSMUST00000034478.3	3259	19	0	0	0	0	multi-exon	FALSE	canonical	3	531	junction_11	45.3756610671839	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTTTTCTTGCTATACT	NA	False	NA	0	True	AGTAAA	-24	NA	31043149	31000697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_31001324_31001697_31001835_31002632_31002908_31006830_31007018_31007770_31007894_31008149_31008264_31008368_31008480_31008852_31008958_31011435_31011567_31011681_31011792_31014171_31014270_31014981_31015122_31017309_31017551_31017784_31017821_31018012_31018171_31019199_31019271_31019450_31019579_31019866_31020027_31042841
transcript_57948.known	chr9	-	3504	17	FSM	ENSMUSG00000031996.18	ENSMUST00000079758.9	3504	17	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_5	460.436596476648	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8737	False	NA	-9	True	AATAAA	-19	NA	31123089	31060852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31067485_31067522_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
transcript_57949.known	chr9	-	3634	17	FSM	ENSMUSG00000031996.18	ENSMUST00000072634.15	3634	17	0	0	0	0	multi-exon	FALSE	canonical	3	712	junction_10	199.562020434751	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8739	False	NA	-9	True	AATAAA	-19	NA	31123087	31060852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31078856_31079025_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
transcript_57951.known	chr9	-	3462	16	FSM	ENSMUSG00000031996.18	ENSMUST00000217641.2	3462	16	0	0	0	0	multi-exon	FALSE	canonical	3	473	junction_10	230.67090554872	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8743	False	NA	-9	True	AATAAA	-19	NA	31123083	31060852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_31062269_31063132_31063289_31063608_31063684_31064709_31064796_31068990_31069144_31069794_31069895_31072522_31072652_31073054_31073214_31074641_31074717_31075838_31075970_31080003_31080213_31081732_31081930_31083229_31083343_31088313_31088438_31089200_31089375_31122918
transcript_57955.nnic	chr9	-	1054	5	NNC	ENSMUSG00000031996.18	novel	3504	17	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	non_canonical	1	5	junction_1	611.364202010553	57	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACCTTGTGTTCCTGACCA	8674	False	NA	-9	True	AATAAA	-19	NA	31123152	31060852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_31061318_31083285_31083343_31088313_31088438_31089200_31089375_31122918
transcript_57957.known	chr9	+	1952	7	FSM	ENSMUSG00000042496.19	ENSMUST00000117389.8	1952	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	4.53688586293873	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCATGAGCATTCTTGTTT	NA	False	NA	NA	False	AATAAA	-21	NA	31191833	31241914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_31191959_31224722_31224918_31227465_31227631_31229807_31229868_31236922_31237131_31238611_31238854_31240957
transcript_57959.known	chr9	-	1799	6	FSM	ENSMUSG00000041737.9	ENSMUST00000048050.9	1799	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.489897948556636	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGAGCATGTGTTCTTATT	NA	False	NA	NA	False	NA	NA	NA	31375758	31337491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_31338253_31339246_31339393_31339816_31340002_31340265_31340476_31342616_31342817_31375461
transcript_57961.nnic	chr9	-	1646	6	Antisense	novelGene_ENSMUSG00000032036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	10	junction_5	6.40624695121879	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCTGTCTCATCAGAGAG	NA	False	NA	NA	False	AATAAA	-17	NA	34900007	34889330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr9_-_34890279_34894916_34895038_34895356_34895445_34895840_34895961_34896290_34896441_34899788
transcript_57963.nnic	chr9	-	1592	6	Antisense	novelGene_ENSMUSG00000032036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	11	junction_5	6.15142259969188	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCTGTCTCATCAGAGAG	NA	False	NA	NA	False	AATAAA	-17	NA	34901200	34889330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr9_-_34890279_34894916_34895038_34895356_34895445_34895840_34895961_34896290_34896441_34901035
transcript_57965.nnic	chr9	-	1557	6	Antisense	novelGene_ENSMUSG00000032036.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	6	junction_5	7.55248303539968	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCGCTGTCTCATCAGAGAG	NA	False	NA	NA	False	AATAAA	-17	NA	34901377	34889330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr9_-_34890279_34894916_34895038_34895356_34895445_34895840_34895961_34896290_34896441_34901247
transcript_57968.known	chr9	-	2095	11	FSM	ENSMUSG00000032038.8	ENSMUST00000034537.8	2095	11	0	0	0	0	multi-exon	FALSE	canonical	3	169	junction_1	8.15107354892593	88	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTTGTGGGGCTCTGTGT	NA	False	NA	-2	True	ATTAAA	-24	NA	35028169	34957871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_34958816_34959114_34959259_34963535_34963680_34964373_34964564_34964667_34964764_34965358_34965420_34965730_34965829_34965997_34966079_34966493_34966579_34966869_34966946_35027993
transcript_57972.nnic	chr9	-	1415	7	NNC	ENSMUSG00000032040.16	novel	1274	6	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	302.376375105963	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTGTAGCCCAGTAG	NA	False	NA	-3	True	AATAAA	-22	NA	35087357	35035703	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_35036141_35037206_35037348_35037602_35037714_35040756_35040871_35047639_35047786_35082372_35082548_35087066
transcript_57974.known	chr9	-	1274	6	FSM	ENSMUSG00000032040.16	ENSMUST00000034539.12	1274	6	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_4	33.1083071146804	589	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGATGGTGTAGCCCAGTAG	NA	False	NA	-3	True	AATAAA	-22	NA	35087357	35035703	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_35036141_35037602_35037714_35040756_35040871_35047639_35047786_35082372_35082548_35087066
transcript_57981.nnic	chr9	+	2829	15	NNC	ENSMUSG00000032042.12	novel	2993	14	NA	NA	3	-4	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_14	273.680396052902	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGCCTCTTAGGTTCATATT	5515	False	NA	-1	True	AATAAA	-14	NA	35122453	35128306	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233_35127457_35127613
transcript_57982.known	chr9	+	2993	14	FSM	ENSMUSG00000032042.12	ENSMUST00000034541.12	2993	14	0	0	0	0	multi-exon	TRUE	canonical	3	518	junction_4	138.528744373691	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTTAGGTTCATATTATTT	5512	False	NA	3	True	AATAAA	-18	NA	35122450	35128310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015_35124177_35124425_35124583_35124678_35124833_35125042_35125132_35125232_35125352_35125482_35125570_35125855_35126029_35126113_35126328_35126762_35126927_35127010_35127110_35127233
transcript_57990.known	chr9	-	2289	11	FSM	ENSMUSG00000039048.16	ENSMUST00000127996.8	2289	11	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_9	18.9747200242849	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	35122351	35115503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121240_35121462_35122102
transcript_57992.known	chr9	-	2232	11	FSM	ENSMUSG00000039048.16	ENSMUST00000043805.15	2232	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	62.4467773387867	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	35122276	35115503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_35116438_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120826_35121240_35121462_35122102
transcript_58.known	ERCC-00170	+	1007	1	FSM	ERCC-00170A	DQ516773	1007	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00170_+_0_1000
transcript_580.known	chr1	-	3248	11	FSM	ENSMUSG00000037351.10	ENSMUST00000043951.10	3248	11	0	0	0	0	multi-exon	FALSE	canonical	3	484	junction_1	31.3043128019128	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTATGAGTAAATATAGCCG	NA	False	NA	NA	False	AATAAA	-14	NA	36749089	36737194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_36739260_36739417_36739459_36739616_36739679_36740214_36740390_36740501_36740595_36740765_36740983_36741139_36741265_36741555_36741682_36745950_36746027_36747271_36747337_36748886
transcript_58009.known	chr9	-	1860	8	FSM	ENSMUSG00000050471.18	ENSMUST00000059057.14	1860	8	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_5	33.1724006256	135	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGGCAATTTCTTTATGA	6364	False	NA	NA	False	TATAAA	-14	NA	35179101	35128315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35155909_35156003_35179018
transcript_5801.known	chr10	-	1206	6	FSM	ENSMUSG00000040521.12	ENSMUST00000040560.11	1206	6	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_5	79.6728310027954	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAATGTGTGAGTGTGTGT	NA	False	NA	-3	True	AATAAA	-24	NA	126866709	126858200	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_126858796_126860804_126860893_126864233_126864357_126865422_126865552_126866331_126866506_126866612
transcript_58012.known	chr9	-	2366	7	FSM	ENSMUSG00000032041.16	ENSMUST00000177129.8	2366	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_6	26.9160216640985	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAACCAAAAAAAAAAAAA	7917	False	NA	NA	False	NA	NA	NA	35111284	35098080	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35110506_35110616_35111156
transcript_58013.known	chr9	-	1783	7	FSM	ENSMUSG00000032041.16	ENSMUST00000176685.8	1783	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	13.6065752079239	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAATGTCATTAAAAA	7935	False	NA	NA	False	NA	NA	NA	35111266	35098639	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_35099227_35099952_35100592_35102313_35102473_35102616_35102679_35102869_35102993_35110516_35110616_35111152
transcript_58018.nic	chr9	-	1551	7	NIC	ENSMUSG00000050471.18	novel	1860	8	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_6	64.4222183894829	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGGCTCTACTTTG	6365	False	NA	-20	True	ATTAAA	-21	NA	35179100	35128530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35138459_35138688_35146526_35146780_35179018
transcript_58019.known	chr9	-	1662	7	FSM	ENSMUSG00000050471.18	ENSMUST00000063782.12	1662	7	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	50.0954644209988	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCAGACAGCCTTCACCTTA	6389	False	NA	NA	False	TATAAA	-16	NA	35179076	35128260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35146526_35146780_35155909_35156003_35179018
transcript_58021.nic	chr9	-	1323	6	NIC	ENSMUSG00000050471.18	novel	1860	8	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	10	junction_5	77.9143119073768	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAACTCTGGCTCTACTTTG	6365	False	NA	-20	True	ATTAAA	-21	NA	35179100	35128530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_35129044_35129224_35129285_35132675_35132962_35134909_35135039_35146526_35146780_35179018
transcript_58022.nic	chr9	+	680	4	ISM	ENSMUSG00000032042.12	ENSMUST00000034541.12	2993	14	-49	4163	-49	0	5prime_fragment	FALSE	canonical	3	967	junction_3	36.5726066278513	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAACAAAAAAAGGGGGGCCA	5463	False	NA	NA	False	AAAAAG	-8	NA	35122401	35124147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_35122702_35123287_35123372_35123643_35123808_35124015
transcript_58023.known	chr9	-	2212	11	FSM	ENSMUSG00000039048.16	ENSMUST00000154691.8	2212	11	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_9	80.1217199016596	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGCCTCTTGAGAGTGTTTC	NA	False	NA	NA	False	NA	NA	NA	35122232	35115501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711_35120804_35121240_35121462_35122040
transcript_58024.known	chr9	-	3260	9	FSM	ENSMUSG00000039048.16	ENSMUST00000143039.8	3260	9	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_7	18.9917745353087	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCAGCCTCTTGAGAGTGTT	NA	False	NA	NA	False	NA	NA	NA	35122266	35115503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_35116420_35116600_35116706_35116884_35117015_35117155_35117317_35117518_35117596_35118774_35118877_35119187_35119283_35120333_35120453_35120711
transcript_58026.known	chr9	+	1821	7	FSM	ENSMUSG00000032044.5	ENSMUST00000034543.5	1821	7	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_6	10.6052921799554	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTTTAATTTTTTGAGAT	NA	False	NA	NA	False	NA	NA	NA	35179160	35187261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_35179375_35179697_35179864_35181260_35181463_35183829_35183924_35183997_35184143_35184763_35184862_35186359
transcript_58033.known	chr9	-	6934	12	FSM	ENSMUSG00000032101.7	ENSMUST00000034612.7	6934	12	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_11	3.32533475603125	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATTTTCCATATGCCTGC	NA	False	NA	NA	False	AATAAA	-24	NA	35469824	35447942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_35453356_35454893_35455083_35457109_35457273_35458076_35458315_35462580_35462759_35464132_35464248_35465602_35465706_35465812_35465906_35468061_35468198_35468677_35468726_35468980_35469048_35469633
transcript_58039.known	chr9	-	1973	4	FSM	ENSMUSG00000050555.10	ENSMUST00000115110.5	1973	4	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	23.2808934536456	109	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGTTTGAACCTTGTTTTA	NA	False	NA	51	True	ATTAAA	-17	NA	35481694	35472115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_35473401_35475358_35475474_35479750_35479802_35481172
transcript_5804.known	chr10	-	695	3	FSM	ENSMUSG00000040521.12	ENSMUST00000134917.2	695	3	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_2	50	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAATATAA	NA	False	NA	NA	False	NA	NA	NA	126866672	126865090	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_126865552_126866331_126866506_126866612
transcript_58042.known	chr9	+	2019	4	FSM	ENSMUSG00000032103.11	ENSMUST00000034615.10	2019	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_3	6.68331255192114	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTAGGACCCTTTAGAGTT	NA	False	NA	NA	False	AATAAA	-18	NA	35470755	35478697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_35470814_35476079_35476494_35476585_35477152_35477716
transcript_58048.known	chr9	-	3397	13	FSM	ENSMUSG00000032113.17	ENSMUST00000034625.12	3397	13	0	0	0	0	multi-exon	FALSE	canonical	3	297	junction_12	54.0685650098301	228	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGGACAGCTATATTTACA	648	False	NA	NA	False	NA	NA	NA	36637954	36619777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36635092_36635317_36637092_36637175_36637858
transcript_58052.known	chr9	-	2142	12	FSM	ENSMUSG00000032113.17	ENSMUST00000174105.8	2142	12	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_10	131.27033490643	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATTGGGGTCCTGTATTCC	721	False	NA	NA	False	ATTAAA	-12	NA	36637881	36620735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_36621727_36623337_36623440_36624616_36624749_36624978_36625157_36625720_36625830_36627721_36627818_36629626_36629732_36630799_36630989_36633899_36633970_36634056_36634122_36637092_36637175_36637858
transcript_58059.known	chr9	-	5867	18	FSM	ENSMUSG00000032116.19	ENSMUST00000120381.9	5867	18	0	0	0	0	multi-exon	FALSE	canonical	3	1637	junction_6	106.765013773661	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGCTGACTGCTTTTTTCA	NA	False	NA	-1	True	ATTAAA	-16	NA	36678975	36640639	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_36644259_36645610_36645727_36646648_36646838_36652784_36652888_36653009_36653127_36654711_36654901_36655291_36655448_36657849_36657942_36659220_36659377_36660848_36661030_36662477_36662643_36663625_36663733_36666101_36666193_36670017_36670164_36670498_36670621_36674632_36674694_36676349_36676477_36678845
transcript_5806.known	chr10	+	1044	6	FSM	ENSMUSG00000006732.15	ENSMUST00000120542.8	1044	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	158.453273869617	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAAGG	NA	False	NA	NA	False	NA	NA	NA	126877826	126881484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880865_126880997_126881147
transcript_58072.known	chr9	-	2220	11	FSM	ENSMUSG00000062762.18	ENSMUST00000238932.2	2220	11	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_2	34.4551882885582	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGTATAATGTTTGA	NA	False	NA	-8	True	ATTAAA	-17	NA	36708689	36690454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_36691566_36693636_36693712_36694028_36694141_36695763_36695876_36696828_36696949_36697231_36697357_36697778_36697846_36699488_36699550_36701075_36701222_36704535_36704646_36708508
transcript_58073.nnic	chr9	-	2136	11	NNC	ENSMUSG00000062762.18	novel	2220	11	NA	NA	8	0	at_least_one_novel_splicesite	TRUE	canonical	3	17	junction_10	160.762060200782	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGTATAATGTTTGA	NA	False	NA	-8	True	ATTAAA	-17	NA	36708649	36690454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_36691566_36693636_36693712_36694028_36694141_36695763_36695876_36696828_36696949_36697231_36697357_36697778_36697846_36699488_36699550_36701075_36701222_36704535_36704646_36708552
transcript_58074.nnic	chr9	-	2196	11	NNC	ENSMUSG00000062762.18	novel	2104	11	NA	NA	-1306	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_10	163.709010136889	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAATATGTATAATGTTTGA	NA	False	NA	-8	True	ATTAAA	-17	NA	36709995	36690454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_36691566_36693636_36693712_36694028_36694141_36695763_36695876_36696828_36696949_36697231_36697357_36697778_36697846_36699488_36699550_36701075_36701222_36704535_36704646_36709838
transcript_58077.known	chr9	+	1794	10	FSM	ENSMUSG00000032118.17	ENSMUST00000034630.15	1794	10	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_5	5.61743318211757	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTCATGGTTTTTGGAGA	NA	False	NA	18	True	AATAAA	-18	NA	36743979	36790220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_36744208_36754957_36755314_36761642_36761743_36772107_36772195_36774792_36774962_36778991_36779264_36780143_36780225_36781776_36781853_36787592_36787659_36789861
transcript_58079.known	chr9	-	3632	13	FSM	ENSMUSG00000035934.17	ENSMUST00000039674.13	3632	13	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_11	4.65698400254929	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGATGCACAGTTCTCTC	NA	False	NA	-5	True	AGTAAA	-19	NA	37058703	36802277	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_36804354_36805615_36805795_36806606_36806684_36820924_36821045_36821807_36821906_36822429_36822560_36834879_36835069_36847616_36847789_36865988_36866129_36879673_36879783_36898463_36898569_36994502_36994573_37058536
transcript_58080.nnic	chr9	+	1073	4	NNC	ENSMUSG00000032121.10	novel	2619	4	NA	NA	-41	-1522	at_least_one_novel_splicesite	FALSE	canonical	3	17	junction_1	19.2527054375915	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAAGGGCTTGCTCTTCAA	NA	False	NA	9	True	AATAAA	-15	NA	37119477	37134474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_37119637_37129561_37129673_37130497_37130601_37133774
transcript_58081.known	chr9	+	2619	4	FSM	ENSMUSG00000032121.10	ENSMUST00000034632.10	2619	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	7.40870359029762	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGAGGGAGGGAGGGAG	NA	False	NA	NA	False	NA	NA	NA	37119518	37135996	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_37119702_37129561_37129673_37130497_37130601_37133774
transcript_58082.known	chr9	-	5943	18	FSM	ENSMUSG00000032122.16	ENSMUST00000115068.10	5943	18	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	7.12469267230106	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTATGACATATGCTTATTC	NA	False	NA	NA	False	AATAAA	-17	NA	37167034	37138880	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_37142953_37144605_37144671_37144915_37145014_37145137_37145217_37145453_37145528_37145688_37145738_37146380_37146467_37146776_37146840_37148174_37148266_37148595_37148749_37149032_37149071_37149511_37149679_37150426_37150504_37150914_37151051_37152387_37152467_37152584_37152679_37153174_37153257_37166594
transcript_58088.known	chr9	+	444	1	FSM	ENSMUSG00000090136.5	ENSMUST00000160052.2	444	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1019	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAGAATGGGGCAAGCTCA	NA	False	NA	NA	False	AATAAA	-43	NA	37164217	37164661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_37164200_37164700
transcript_58089.known	chr9	-	1747	4	FSM	ENSMUSG00000034303.9	ENSMUST00000217238.3	1747	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	4.92160768674447	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATGTCAGGTAATAATCTA	NA	False	NA	NA	False	AATAAA	-13	NA	37259653	37252830	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_37253918_37255179_37255330_37259033_37259220_37259329
transcript_58092.known	chr9	+	423	4	FSM	ENSMUSG00000042138.10	ENSMUST00000214298.2	423	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	69.0909223817106	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATTTTGGAGTCGGTGCA	676	False	NA	NA	False	NA	NA	NA	37400895	37434013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_37401130_37428668_37428769_37430022_37430084_37433985
transcript_58093.known	chr9	+	1865	7	FSM	ENSMUSG00000001946.15	ENSMUST00000002011.14	1865	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.24721912892465	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAATTGAATCACTTTTTTT	5182	False	NA	NA	False	AATAAA	-28	NA	37439373	37449615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_37439587_37442783_37442972_37445448_37445651_37445833_37445990_37447893_37448017_37448301_37448429_37448759
transcript_58096.known	chr9	+	1166	7	FSM	ENSMUSG00000001943.9	ENSMUST00000002008.7	1166	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.13138237134266	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCGTTCTCCTTTCTAGTG	NA	False	NA	NA	False	ATTAAA	-16	NA	37450550	37455497	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_37450735_37451164_37451323_37451589_37451798_37452622_37452782_37453650_37453771_37453884_37454030_37455305
transcript_58097.known	chr9	+	891	6	FSM	ENSMUSG00000001943.9	ENSMUST00000215271.2	891	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.87054001888146	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTCCTTTCTAGTGGTGA	NA	False	NA	NA	False	ATTAAA	-20	NA	37450589	37455501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_37450735_37451671_37451798_37452622_37452782_37453650_37453771_37453884_37454030_37455305
transcript_58098.known	chr9	+	4947	10	FSM	ENSMUSG00000001942.9	ENSMUST00000215474.2	4947	10	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_7	7.87400787401181	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	37524965	37560951	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_37525223_37528095_37528258_37534194_37534371_37538995_37539135_37542644_37542901_37544253_37544364_37544916_37545051_37553935_37554094_37556047_37556244_37557592
transcript_581.nnic	chr1	+	1973	12	NNC	ENSMUSG00000026117.11	novel	1338	6	NA	NA	293	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	9.30653373968708	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGAGTATTCTCATCTTC	NA	False	NA	1	True	AATAAA	-14	NA	36810365	36821896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_36810653_36810869_36811031_36817233_36817373_36817460_36817546_36817627_36817672_36817831_36817884_36818197_36818394_36818765_36818973_36819917_36820111_36820199_36820341_36820426_36820540_36821541
transcript_58105.known	chr9	-	1984	9	FSM	ENSMUSG00000011114.19	ENSMUST00000117654.3	1984	9	0	0	0	0	multi-exon	FALSE	canonical	3	1493	junction_6	94.6836839165017	1045	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGATTCTGACCCTAGTT	NA	False	NA	NA	False	NA	NA	NA	37568608	37560058	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37564058_37564328_37564466_37565511_37565733_37566317_37566389_37568293
transcript_58106.known	chr9	-	1761	8	FSM	ENSMUSG00000011114.19	ENSMUST00000142736.9	1761	8	0	0	0	0	multi-exon	FALSE	canonical	3	1493	junction_5	98.6130346974724	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTATTTGTTTCTTCTTGT	NA	False	NA	-20	True	AATAAA	-18	NA	37568533	37560477	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_37560800_37561326_37561470_37562244_37562356_37562585_37562684_37563910_37564466_37565511_37565733_37566317_37566389_37568293
transcript_5811.known	chr10	+	1791	6	FSM	ENSMUSG00000006732.15	ENSMUST00000006915.14	1791	6	0	0	0	0	multi-exon	FALSE	canonical	3	356	junction_3	29.1245600825146	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTTGAGTGTTTGCCTG	NA	False	NA	13	True	TTTAAA	-18	NA	126877800	126882234	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_126877940_126878928_126879093_126880335_126880521_126880624_126880739_126880894_126880997_126881147
transcript_58110.known	chr9	-	696	5	FSM	ENSMUSG00000001948.11	ENSMUST00000002013.11	696	5	0	0	0	0	multi-exon	TRUE	canonical	2	6	junction_2	1.92028643696715	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTGTGGTTGTCTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	37525018	37514585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_37514783_37517088_37517167_37518912_37518984_37523131_37523315_37524851
transcript_58113.known	chr9	-	823	3	FSM	ENSMUSG00000011114.19	ENSMUST00000126062.2	823	3	0	0	0	0	multi-exon	FALSE	canonical	3	1703	junction_2	71.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCAGCATATTAAACTGGTT	NA	False	NA	NA	False	NA	NA	NA	37568464	37565151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_37565733_37566317_37566389_37568293
transcript_58121.nnic	chr9	-	2400	20	NNC	ENSMUSG00000040111.18	novel	2781	20	NA	NA	-306	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	8.32477861916891	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAGAGATAATGCCTA	NA	False	NA	NA	False	NA	NA	NA	40245130	40209171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_40209376_40210897_40211016_40211284_40211393_40211735_40211748_40214793_40214885_40215618_40215823_40216361_40216466_40217627_40217771_40218035_40218155_40219151_40219296_40219588_40219779_40221193_40221351_40223053_40223170_40226262_40226344_40226983_40227080_40228160_40228265_40228804_40228890_40238713_40238735_40244740_40244952_40245038
transcript_58123.nic	chr9	-	1081	3	ISM	ENSMUSG00000087135.8	ENSMUST00000149386.8	819	4	387	0	-333	0	3prime_fragment	FALSE	canonical	3	11	junction_2	1	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTGTGACTGCCGGTGAC	NA	False	NA	NA	False	AATAAA	-29	NA	40695090	40692037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_-_40692492_40694218_40694287_40694531
transcript_58126.known	chr9	+	2394	9	FSM	ENSMUSG00000015656.18	ENSMUST00000015800.16	2394	9	0	0	0	0	multi-exon	FALSE	canonical	3	3928	junction_3	6050.21958150074	25421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2167	False	NA	10	True	AATAAA	-20	NA	40712279	40716496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
transcript_58133.nic	chr9	+	2299	9	NIC	ENSMUSG00000015656.18	novel	514	3	NA	NA	49	0	combination_of_known_junctions	FALSE	canonical	3	58	junction_1	7902.13270955221	2927	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2534	False	NA	10	True	AATAAA	-20	NA	40712646	40716496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_40712917_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715660_40715758_40715992_40716227
transcript_58134.nic	chr9	+	2205	8	NIC	ENSMUSG00000015656.18	novel	2394	9	NA	NA	-4	0	intron_retention	FALSE	canonical	3	3928	junction_3	6242.18814002832	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGTTGTCCTGACTGAGT	2455	False	NA	10	True	AATAAA	-20	NA	40712567	40716496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_40712645_40713213_40713424_40713713_40713920_40714034_40714188_40714269_40714826_40715035_40715239_40715460_40715992_40716227
transcript_58145.known	chr9	-	1677	6	FSM	ENSMUSG00000032018.15	ENSMUST00000169609.2	1677	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	75.9910521048367	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCAGCTCTTCCATAATTC	NA	False	NA	-4	True	AATAAA	-29	NA	42175496	42166028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42173346_42173428_42175417
transcript_58146.known	chr9	-	4787	6	FSM	ENSMUSG00000032018.15	ENSMUST00000052725.15	4787	6	0	0	0	0	multi-exon	FALSE	canonical	3	174	junction_5	23.9198662203617	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCATTGTGTGGACCTGT	NA	False	NA	-1	True	NA	NA	NA	42175552	42162890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42173346_42173428_42175501
transcript_58151.known	chr9	-	703	5	FSM	ENSMUSG00000032018.15	ENSMUST00000217513.2	703	5	0	0	0	0	multi-exon	TRUE	canonical	2	2	junction_4	78.337411241373	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCCAGATCTTAAGGCCATT	NA	False	NA	NA	False	NA	NA	NA	42175551	42166892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_42167094_42167402_42167504_42169876_42170010_42170977_42171196_42175501
transcript_58152.known	chr9	-	2327	2	FSM	ENSMUSG00000037287.16	ENSMUST00000142775.2	2327	2	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	GAAATAGAAAAAAAAAAAGA	4354	False	NA	NA	False	NA	NA	NA	42339534	42325285	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_42327446_42339367
transcript_58157.known	chr9	-	3503	3	FSM	ENSMUSG00000048503.8	ENSMUST00000061833.6	3503	3	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	3	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTGCCTTCGTATCTTTGT	NA	False	NA	NA	False	AATAAA	-22	NA	43027865	43019944	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_43023154_43024755_43024956_43027771
transcript_58158.nnic	chr9	-	2790	13	NNC	ENSMUSG00000032015.17	novel	2522	13	NA	NA	5497	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_12	21.2895057611856	7	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAGATGTTCAGAGGAGTG	5118	False	NA	NA	False	CATAAA	-17	NA	43111555	43035233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_43036426_43038610_43038753_43040172_43040240_43045773_43045936_43048589_43048727_43050610_43050753_43051114_43051298_43054009_43054093_43056515_43056619_43058106_43058212_43087582_43087618_43110326_43110396_43111185
transcript_58159.known	chr9	+	296	2	FSM	ENSMUSG00000095385.4	ENSMUST00000210037.2	296	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAGCTCTAAAGGATGAAT	NA	False	NA	NA	False	AATAAA	-16	NA	43185569	43191363	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_43185653_43191150
transcript_58160.known	chr9	+	1735	4	FSM	ENSMUSG00000032011.6	ENSMUST00000114840.2	1735	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	3.74165738677394	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTGGTGTCTGTCTCTTCT	NA	False	NA	34	True	AATAAA	-20	NA	43954680	43959876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_43954774_43957253_43957316_43957910_43958250_43958635
transcript_58162.known	chr9	+	3867	13	FSM	ENSMUSG00000032010.16	ENSMUST00000034508.14	3867	13	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_2	11.1654228162962	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGGTGTGACGGTCTTGAT	NA	False	NA	NA	False	AATAAA	-20	NA	43978317	44006924	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_43978518_43986662_43987520_44000428_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
transcript_58163.known	chr9	+	2057	12	FSM	ENSMUSG00000032010.16	ENSMUST00000065461.9	2057	12	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	11.7473401244707	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGTTTGGGTTCTCAAAA	2248	False	NA	NA	False	NA	NA	NA	43996235	44005774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_43996633_44000428_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
transcript_58165.known	chr9	+	1486	12	FSM	ENSMUSG00000032010.16	ENSMUST00000176416.8	1486	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	17.2626765016321	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AATTCAGAAAAAAAAAAAAA	2259	False	NA	NA	False	NA	NA	NA	43996246	44005223	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_43996633_44000437_44000480_44001326_44001451_44002300_44002413_44002508_44002620_44003132_44003198_44003381_44003486_44003572_44003654_44003773_44003853_44003998_44004107_44004423_44004545_44005070
transcript_58166.known	chr9	+	2989	16	FSM	ENSMUSG00000032135.16	ENSMUST00000034650.15	2989	16	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_3	5.20085463062456	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATGCTGTGTTCCATTCAT	78	False	NA	19	True	AATAAA	-21	NA	44045858	44054024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_44046054_44047814_44047946_44048034_44048243_44048335_44048407_44048514_44048603_44050131_44050312_44050454_44050577_44050696_44050860_44050949_44051069_44051156_44051299_44051433_44051556_44051658_44051801_44051894_44051991_44052141_44052290_44052571_44052690_44053080
transcript_5817.known	chr10	+	1089	5	FSM	ENSMUSG00000006732.15	ENSMUST00000139486.2	1089	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	181.330327027775	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGCCCACTGTTTAGTTGT	NA	False	NA	-49	True	NA	NA	NA	126877851	126881768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_126877940_126878928_126879093_126880624_126880739_126880894_126880997_126881147
transcript_58170.known	chr9	-	2193	11	FSM	ENSMUSG00000032105.6	ENSMUST00000034618.6	2193	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.66332495807108	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACAGGATTTGTGTTTTATT	657	False	NA	NA	False	NA	NA	NA	44162768	44158603	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44159314_44159527_44159729_44159852_44160060_44160143_44160341_44160531_44160737_44160907_44161045_44161139_44161330_44161547_44161760_44162079_44162154_44162294_44162323_44162736
transcript_58172.known	chr9	-	5333	10	FSM	ENSMUSG00000032119.6	ENSMUST00000216508.2	5333	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_7	6.83852557930183	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTTGAGTGTGGTGGTGCC	NA	False	NA	-2	True	NA	NA	NA	44216968	44203736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859_44211090_44213706_44213885_44216912
transcript_58173.known	chr9	-	1439	10	FSM	ENSMUSG00000032119.6	ENSMUST00000034629.6	1439	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	17.1399468429099	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAGGATCAGATCCGG	NA	False	NA	NA	False	NA	NA	NA	44216943	44207790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44207878_44208989_44209115_44209195_44209335_44209420_44209542_44209630_44209709_44210169_44210323_44210509_44210622_44210859_44211090_44213706_44214070_44216912
transcript_58176.known	chr9	+	2205	9	FSM	ENSMUSG00000032123.6	ENSMUST00000054708.5	2205	9	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_1	28.7920887571569	175	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCACAGTGCTCCATTTTC	3774	False	NA	NA	False	AATAAA	-32	NA	44238141	44245197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_44238503_44238848_44238970_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
transcript_58180.known	chr9	+	2050	8	FSM	ENSMUSG00000032123.6	ENSMUST00000215050.2	2050	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	96.7247303919104	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAAAGATCACAGTGCTCC	3802	False	NA	NA	False	AATAAA	-26	NA	44238169	44245191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_44238503_44239249_44239464_44240287_44240435_44242414_44242500_44243200_44243390_44243859_44243948_44244112_44244269_44244353
transcript_58182.known	chr9	+	1384	1	FSM	ENSMUSG00000049932.4	ENSMUST00000052686.4	1384	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	925	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGTTTAATGTTGAATGCT	5253	False	NA	34	True	ATTAAA	-30	NA	44245990	44247374	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_44246000_44247400
transcript_58183.known	chr9	-	1534	14	FSM	ENSMUSG00000032126.17	ENSMUST00000097558.5	1534	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_13	247.72641905583	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTGAGTCTGAGACCTT	3255	False	NA	-4	True	AATAAA	-20	NA	44253678	44247648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44253517
transcript_58184.known	chr9	-	1605	14	FSM	ENSMUSG00000032126.17	ENSMUST00000077353.15	1605	14	0	0	0	0	multi-exon	FALSE	canonical	3	699	junction_4	86.0870620274656	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCTTTCTGTTGTAAAAC	1408	False	NA	9	True	AATAAA	-33	NA	44255525	44247635	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44248143_44248222_44248310_44248414_44248469_44248652_44248773_44248948_44248988_44249211_44249326_44250774_44250851_44250944_44251023_44251984_44252063_44252372_44252429_44252511_44252562_44252922_44252996_44253314_44253369_44255306
transcript_58192.known	chr9	-	3536	16	FSM	ENSMUSG00000032127.10	ENSMUST00000034644.10	3536	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	77.9168787875901	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGCCTTCTGGATAGCCTC	6378	False	NA	NA	False	AATATA	-16	NA	44272967	44259045	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44259882_44260199_44260423_44263893_44264066_44264205_44264409_44264511_44264652_44265133_44265296_44265399_44265589_44265705_44265853_44266260_44266448_44266995_44267148_44267524_44267727_44269365_44269614_44270434_44270599_44270908_44271045_44271135_44271285_44272741
transcript_58194.known	chr9	-	818	1	FSM	ENSMUSG00000111088.2	ENSMUST00000217460.2	818	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAATGAGTATTCATGTG	NA	False	NA	NA	False	NA	NA	NA	44290747	44289929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44289900_44290700
transcript_58195.known	chr9	+	4432	26	FSM	ENSMUSG00000032115.15	ENSMUST00000066601.13	4432	26	0	0	0	0	multi-exon	TRUE	canonical	3	476	junction_1	89.8853847964173	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTTTGCTTCTTCCCTCC	NA	False	NA	7	True	AATAAA	-23	NA	44290786	44303666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_44290893_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
transcript_58199.known	chr9	+	4489	26	FSM	ENSMUSG00000032115.15	ENSMUST00000161318.8	4489	26	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	153.155429547894	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGTATGTGTTTGCTTCTT	NA	False	NA	1	True	AATAAA	-17	NA	44290869	44303660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_44291039_44291809_44291908_44292112_44292207_44292350_44292430_44292550_44292706_44292810_44292888_44293138_44293321_44293749_44293866_44295405_44295599_44295733_44295869_44295958_44296042_44296126_44296260_44296414_44296603_44296863_44297003_44298328_44298390_44298546_44298627_44298984_44299171_44299302_44299476_44299574_44299663_44299778_44299902_44300088_44300223_44300334_44300420_44300527_44300769_44300873_44300925_44302132_44302184_44302285
transcript_582.nnic	chr1	+	1984	12	NNC	ENSMUSG00000026117.11	novel	1338	6	NA	NA	293	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	12.0288908414713	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTGAGTATTCTCATCTTC	NA	False	NA	1	True	AATAAA	-14	NA	36810365	36821896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_36810664_36810869_36811031_36817233_36817373_36817460_36817546_36817627_36817672_36817831_36817884_36818197_36818394_36818765_36818973_36819917_36820111_36820199_36820341_36820426_36820540_36821541
transcript_58201.known	chr9	+	2128	9	FSM	ENSMUSG00000032114.10	ENSMUST00000215420.2	2128	9	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	8.7740740252177	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTAAACAGTCAGTGGCTCA	NA	False	NA	NA	False	AATAAA	-13	NA	44308148	44314257	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_44308289_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
transcript_58202.known	chr9	+	2344	9	FSM	ENSMUSG00000032114.10	ENSMUST00000213388.2	2344	9	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	9.53939201416946	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCAGTGGCTCATCCTTTCA	NA	False	NA	NA	False	AATAAA	-21	NA	44308395	44314265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_44308744_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
transcript_58203.nic	chr9	+	2369	9	NIC	ENSMUSG00000032114.10	novel	2344	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_1	8.7740740252177	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTCAGTGGCTCATCCTTT	NA	False	NA	NA	False	AATAAA	-19	NA	44308395	44314263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_44308771_44309564_44309919_44310545_44310779_44311091_44311336_44311785_44311945_44312143_44312230_44312717_44312832_44313369_44313509_44313598
transcript_58208.known	chr9	-	1725	11	FSM	ENSMUSG00000043923.9	ENSMUST00000053286.9	1725	11	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	11.2853887837327	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTGATTGAACCTGTAAA	8410	False	NA	0	True	AATAAA	-21	NA	44329866	44321455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324320_44324433_44324499_44324767_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
transcript_58209.known	chr9	-	1080	11	FSM	ENSMUSG00000043923.9	ENSMUST00000214494.2	1080	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	17.9677488851553	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCTGAAGGTTCCCAGG	8950	False	NA	NA	False	NA	NA	NA	44329326	44321609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44321662_44321744_44321878_44321987_44322078_44323749_44323781_44324213_44324341_44324433_44324499_44324739_44324831_44324903_44324971_44328407_44328507_44328929_44329094_44329165
transcript_5821.known	chr10	+	1057	2	FSM	ENSMUSG00000006732.15	ENSMUST00000135655.2	1057	2	0	0	0	0	multi-exon	FALSE	canonical	3	433	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	GAAAAAAAAAAAAAAAAGAA	NA	False	NA	NA	False	NA	NA	NA	126877825	126879871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_126877940_126878928
transcript_58221.known	chr9	-	1220	5	FSM	ENSMUSG00000032112.11	ENSMUST00000034623.8	1220	5	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_4	135.857462069626	507	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTCTCTCCTAACTGAT	1473	False	NA	-8	True	AATAAA	-17	NA	44318897	44315055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44315396_44315630_44315758_44316539_44316644_44318100_44318276_44318423
transcript_58224.known	chr9	-	1185	4	FSM	ENSMUSG00000032112.11	ENSMUST00000217163.2	1185	4	0	0	0	0	multi-exon	FALSE	canonical	3	556	junction_3	146.917210246678	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGTTTTCTCTCCTAACTG	1741	False	NA	-10	True	AATAAA	-15	NA	44318629	44315057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44315758_44316539_44316644_44318100_44318276_44318423
transcript_58225.known	chr9	-	935	4	FSM	ENSMUSG00000032112.11	ENSMUST00000213747.2	935	4	0	0	0	0	multi-exon	FALSE	canonical	3	851	junction_3	13.0213499897497	227	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGGGCATTCAGTGAATATAA	1967	False	NA	53	True	NA	NA	NA	44318403	44314994	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44315396_44315630_44315758_44316539_44316644_44318100
transcript_58230.known	chr9	-	401	3	FSM	ENSMUSG00000032112.11	ENSMUST00000217084.2	401	3	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_2	420.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGGTGGCAGAGAAGGCT	2031	False	NA	NA	False	NA	NA	NA	44318339	44315360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44315396_44315630_44315758_44318100
transcript_58232.known	chr9	+	577	4	FSM	ENSMUSG00000009927.10	ENSMUST00000216867.2	577	4	0	0	0	0	multi-exon	FALSE	canonical	3	11233	junction_1	829.827692958002	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGAATGGGTGCATCTGT	NA	False	NA	89	True	AATAAA	-14	NA	44318993	44321486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_44319055_44319284_44319381_44319982_44320167_44321250
transcript_58233.nic	chr9	-	804	3	ISM	ENSMUSG00000074397.6	ENSMUST00000215980.2	676	4	-148	226	-27	-226	5prime_fragment	FALSE	canonical	3	31	junction_1	2.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCTGACCTGGACCCTGGG	9187	False	NA	-6	True	AATAAA	-16	NA	44352460	44347077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_-_44347400_44347500_44347576_44352053
transcript_58234.known	chr9	-	1083	5	FSM	ENSMUSG00000041523.4	ENSMUST00000047740.4	1083	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	1.4790199457749	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCGACCATGTCTATGTG	8953	False	NA	NA	False	AATAAA	-25	NA	44366273	44364011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44364407_44364779_44364851_44365091_44365231_44365358_44365491_44365927
transcript_58236.known	chr9	+	6029	14	FSM	ENSMUSG00000032097.11	ENSMUST00000217034.2	6029	14	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	7.66070431047592	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGTCTTGTATGTATGTTC	NA	False	NA	17	True	AATAAA	-18	NA	44516192	44552028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_44516250_44518419_44518890_44524124_44524189_44525508_44525614_44534915_44535046_44535771_44535919_44537684_44537780_44538934_44539058_44539937_44540067_44541320_44541438_44542679_44542744_44545389_44545492_44546979_44547163_44547785
transcript_58238.nnic	chr9	-	1624	3	NNC	ENSMUSG00000048537.17	novel	3485	16	NA	NA	3948	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	18	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGAGTGTGGAAGTCTGAG	1577	False	NA	0	True	AATAAA	-18	NA	44603780	44597604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_44598996_44599913_44600000_44603633
transcript_58239.known	chr9	-	4072	10	FSM	ENSMUSG00000032096.17	ENSMUST00000034607.10	4072	10	0	0	0	0	multi-exon	FALSE	canonical	3	910	junction_6	81.8426674920987	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCTTATCCCTCAAACGG	NA	False	NA	NA	False	NA	NA	NA	44679142	44652860	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44655314_44656714_44656920_44661621_44661731_44662512_44662661_44663406_44663573_44668416_44668582_44669857_44670064_44670177_44670358_44671258_44671523_44678966
transcript_58249.known	chr9	+	1059	12	FSM	ENSMUSG00000002031.14	ENSMUST00000238800.2	1059	12	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_2	11.1058022211458	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCCTCCTGGGACTGTGC	NA	False	NA	NA	False	NA	NA	NA	44684449	44701877	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_44684471_44684984_44685082_44689858_44689936_44693396_44693531_44695027_44695103_44695256_44695351_44695628_44695758_44697590_44697713_44698134_44698202_44700863_44700925_44701187_44701274_44701781
transcript_58257.known	chr9	-	2448	9	FSM	ENSMUSG00000002032.18	ENSMUST00000002100.8	2448	9	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_8	3.68908864084343	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAAGAAGTGTTTGTTCATT	8172	False	NA	NA	False	AGTAAA	-15	NA	44710604	44705072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44706346_44706487_44706575_44706706_44706808_44706978_44707010_44707292_44707425_44707620_44707912_44709417_44709730_44709960_44710055_44710477
transcript_58261.known	chr9	-	295	2	FSM	ENSMUSG00000038717.10	ENSMUST00000216380.2	295	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTGCTGTGTTTTCTCTGTC	NA	False	NA	-29	True	AATAAA	-19	NA	44832005	44824567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44824765_44831907
transcript_58262.known	chr9	-	544	3	FSM	ENSMUSG00000038717.10	ENSMUST00000043675.9	544	3	0	0	0	0	multi-exon	FALSE	canonical	3	4613	junction_2	56	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGAGTTGTCTTTGGCTTT	NA	False	NA	24	True	NA	NA	NA	44832040	44824514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44824765_44825948_44826110_44831907
transcript_58264.nic	chr9	-	855	4	ISM	ENSMUSG00000059890.17	ENSMUST00000138559.9	3374	9	6	6608	6	286	5prime_fragment	FALSE	canonical	3	48	junction_1	11.6714276000077	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAACAGAAAACTTCTATA	5328	False	NA	NA	False	NA	NA	NA	44876870	44863960	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_-_44864471_44871276_44871438_44874634_44874731_44876782
transcript_58265.known	chr9	-	1023	7	FSM	ENSMUSG00000002033.15	ENSMUST00000002101.12	1023	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_5	2.73353657780945	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCTCTCTATCCAAATAGACA	NA	False	NA	NA	False	ATTAAA	-18	NA	44891729	44880869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44881216_44881988_44882072_44882560_44882605_44884803_44884936_44885460_44885689_44886544_44886569_44891563
transcript_58266.known	chr9	-	1462	8	FSM	ENSMUSG00000032093.8	ENSMUST00000102832.3	1462	8	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	3.13635691430002	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTATGTCTCTTTTCTTCT	4751	False	NA	NA	False	AATAAA	-17	NA	44920911	44910037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_44910886_44911732_44911780_44912276_44912445_44913435_44913652_44916809_44916825_44918473_44918492_44920645_44920748_44920863
transcript_58267.known	chr9	+	3107	6	FSM	ENSMUSG00000032092.6	ENSMUST00000034600.5	3107	6	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_5	54.042205728486	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGATTTTTATTATTTGC	NA	False	NA	15	True	AATAAA	-18	NA	44953722	44965313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_44954093_44954997_44955165_44955450_44955662_44958461_44958610_44960949_44961023_44963175
transcript_58269.known	chr9	+	3424	6	FSM	ENSMUSG00000070305.11	ENSMUST00000114664.8	3424	6	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	3.70944739819828	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCCTTTTCGTGTCTAACT	NA	False	NA	27	True	AATAAA	-20	NA	44966483	44988734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_44966617_44973338_44973506_44977636_44977848_44979504_44979671_44981953_44982018_44986051
transcript_5827.known	chr10	-	1556	6	FSM	ENSMUSG00000006736.10	ENSMUST00000060991.6	1556	6	0	0	0	0	multi-exon	FALSE	canonical	3	545	junction_1	41.1698919114442	188	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGTCTTGTTTTCCTGTA	NA	False	NA	0	True	AATAAA	-15	NA	126906133	126903148	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_126904060_126904137_126904252_126904348_126904481_126904776_126904858_126905214_126905383_126905983
transcript_58278.known	chr9	+	1789	8	FSM	ENSMUSG00000066705.8	ENSMUST00000217381.2	1789	8	0	0	0	0	multi-exon	FALSE	canonical	3	728	junction_2	116.890320124361	1185	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGAGTGGCTTTTCTTCT	368	False	NA	22	True	AATAAA	-26	NA	45281482	45307457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_45281787_45301285_45301346_45301934_45301971_45302074_45302150_45302858_45302896_45303512_45303563_45303973_45304024_45306280
transcript_58285.known	chr9	+	632	6	FSM	ENSMUSG00000059412.8	ENSMUST00000041005.6	632	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	6.73498329619309	78	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCGTGAGTGCTTATCATTC	NA	False	NA	34	True	AATGAA	-20	NA	45314435	45321576	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_45314599_45319403_45319443_45319597_45319673_45320810_45320848_45321000_45321032_45321289
transcript_58288.known	chr9	-	5541	30	FSM	ENSMUSG00000043987.19	ENSMUST00000117194.8	5541	30	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_18	19.7537756592073	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCAGTCCTGTGAGTGTGCT	NA	False	NA	37	True	ATTAAA	-25	NA	45739989	45678243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_45679662_45679818_45679942_45680706_45680774_45681992_45682356_45682828_45682941_45683579_45683688_45685115_45685324_45685739_45685808_45686081_45686206_45686489_45686666_45686974_45687044_45687162_45687247_45688080_45688225_45689705_45689829_45690094_45690227_45690440_45690519_45690679_45690909_45690987_45691135_45697075_45697220_45698723_45698810_45702380_45702465_45704229_45704311_45705349_45705728_45712762_45712841_45713940_45714076_45714470_45714627_45721001_45721207_45729275_45729388_45734943_45735063_45739799
transcript_58291.known	chr9	-	3964	14	FSM	ENSMUSG00000042790.17	ENSMUST00000058720.13	3964	14	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_13	9.64395754655542	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTCTCTTGCCTTATTGTC	9120	False	NA	17	True	NA	NA	NA	45818175	45774806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811043_45811555_45816103_45816218_45817649
transcript_58293.known	chr9	-	2847	14	FSM	ENSMUSG00000042790.17	ENSMUST00000161187.8	2847	14	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_11	14.9741394434206	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAAAATGCATCTGGGGG	9590	False	NA	NA	False	ATTAAA	-14	NA	45817705	45774988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_45776297_45777863_45777960_45778797_45778931_45779036_45779414_45780476_45780576_45780751_45780843_45782843_45782933_45783168_45783266_45802101_45802242_45807382_45807524_45809729_45809790_45811508_45811555_45816103_45816218_45817649
transcript_58298.known	chr9	-	6873	6	FSM	ENSMUSG00000003131.8	ENSMUST00000172450.3	6873	6	0	0	0	0	multi-exon	FALSE	canonical	3	321	junction_5	34.2169548615887	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTATTTTTTGTTTGTTTATT	3912	False	NA	NA	False	CATAAA	-16	NA	45896349	45874156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890028_45896002
transcript_5830.known	chr10	+	574	4	FSM	ENSMUSG00000006728.13	ENSMUST00000135179.8	574	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	2458.18813130502	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGTTGTTAATGGTACA	NA	False	NA	-83	True	NA	NA	NA	126899484	126901149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_126899629_126900453_126900590_126900703_126900872_126901023
transcript_58300.known	chr9	-	794	6	FSM	ENSMUSG00000003131.8	ENSMUST00000214179.2	794	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	143.058869001541	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCATCAGTGTTACAGCATC	9711	False	NA	NA	False	NA	NA	NA	45896692	45879981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_45880265_45884239_45884363_45886378_45886496_45887338_45887429_45889939_45890028_45896599
transcript_58306.known	chr9	+	2984	14	FSM	ENSMUSG00000032078.18	ENSMUST00000156440.8	2984	14	0	0	0	0	multi-exon	FALSE	canonical	3	619	junction_8	51.2505159448701	168	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTTGGTACAGCGTCCATT	NA	False	NA	NA	False	AATAAA	-18	NA	46184361	46193941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_46184666_46184775_46184938_46185353_46185445_46185954_46186026_46186661_46186749_46187028_46187152_46187497_46187546_46187709_46187777_46188089_46188161_46188943_46189034_46189601_46189713_46190966_46191054_46191213_46191280_46192335
transcript_58315.known	chr9	+	2539	10	FSM	ENSMUSG00000032077.6	ENSMUST00000074957.5	2539	10	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_1	15.5737988261228	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTGTGGCTCAGATGGGCT	NA	False	NA	NA	False	NA	NA	NA	46194305	46210408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_46194472_46197640_46197732_46198314_46198400_46198959_46199734_46201423_46201642_46202605_46202709_46202992_46203132_46203363_46203549_46203745_46203828_46209712
transcript_58319.nnic	chr9	+	677	3	NNC	ENSMUSG00000044229.10	novel	4871	9	NA	NA	-3	-205469	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	2	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAAGTCATCTTCGTAAAAA	NA	False	NA	NA	False	AATAAA	-24	NA	48073317	48105359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_48073558_48102995_48103155_48105081
transcript_5832.known	chr10	+	2038	7	FSM	ENSMUSG00000006728.13	ENSMUST00000140254.8	2038	7	0	0	0	0	multi-exon	FALSE	canonical	3	4641	junction_3	424.742274797318	511	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTCTTTAATGTTTTTTC	NA	False	NA	29	True	AAAACA	-27	NA	126899482	126903166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_126899629_126900088_126900323_126900453_126900590_126900703_126900872_126901023_126901873_126901969_126902106_126902797
transcript_58323.known	chr9	-	1077	7	FSM	ENSMUSG00000032026.8	ENSMUST00000034524.5	1077	7	0	0	0	0	multi-exon	FALSE	canonical	3	1058	junction_4	53.1959167188193	591	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCTTCGGCACCCTCTGCTC	NA	False	NA	-1	True	AATAAA	-26	NA	48391911	48379811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_48380247_48383119_48383174_48384331_48384441_48385701_48385814_48386419_48386498_48390609_48390694_48391706
transcript_58327.known	chr9	-	1780	4	FSM	ENSMUSG00000032026.8	ENSMUST00000213508.2	1780	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	526.615820330364	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATATATGATTCAGTTAAAGT	NA	False	NA	-15	True	AATAAA	-10	NA	48391915	48384790	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_48386200_48386419_48386498_48390609_48390694_48391706
transcript_58328.known	chr9	-	553	3	FSM	ENSMUSG00000032026.8	ENSMUST00000214161.2	553	3	0	0	0	0	multi-exon	FALSE	canonical	3	1141	junction_1	21.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCTTCTACATTCAGTCTG	NA	False	NA	NA	False	NA	NA	NA	48391893	48386215	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_48386498_48390609_48390694_48391706
transcript_58329.known	chr9	-	1867	6	FSM	ENSMUSG00000042396.11	ENSMUST00000214923.2	1867	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	182.483314305719	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAAAGAGAATGTGTCTC	NA	False	NA	-12	True	ATTAAA	-4	NA	48406594	48400008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48405582_48405688_48406454
transcript_5833.known	chr10	+	329	2	FSM	ENSMUSG00000112639.2	ENSMUST00000217874.2	329	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTCTCTTTTTAAATTT	NA	False	NA	NA	False	AATAAA	-13	NA	126906349	126906970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_126906494_126906785
transcript_58331.known	chr9	-	1773	5	FSM	ENSMUSG00000042396.11	ENSMUST00000170000.4	1773	5	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_3	15.188400179084	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAATGTGTCTCTTTATTTT	NA	False	NA	-4	True	ATTAAA	-12	NA	48406597	48400000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_48401289_48402147_48402239_48404706_48404795_48405318_48405482_48406454
transcript_58335.known	chr9	-	2703	1	FSM	ENSMUSG00000042396.11	ENSMUST00000213525.2	2703	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAACAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	48406599	48403896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_48403900_48406600
transcript_58336.known	chr9	+	531	1	FSM	ENSMUSG00000042293.9	ENSMUST00000048824.9	531	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	46	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTTGGTGTGACGGCAGT	2783	False	NA	14	True	NA	NA	NA	48406741	48407272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_48406700_48407300
transcript_58337.known	chr9	-	1043	3	FSM	ENSMUSG00000032271.14	ENSMUST00000034808.12	1043	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	2.5	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGCAGTGCTCACTGTATG	NA	False	NA	10	True	ATTAAA	-33	NA	48516453	48503176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_48503663_48514653_48514862_48516104
transcript_58338.known	chr9	-	558	2	FSM	ENSMUSG00000032271.14	ENSMUST00000128076.2	558	2	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CCAGATGAAAAATGCAAAAG	NA	False	NA	NA	False	NA	NA	NA	48516377	48514576	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_48514862_48516104
transcript_5834.known	chr10	-	2627	15	FSM	ENSMUSG00000040462.14	ENSMUST00000164259.9	2627	15	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_3	48.7011398265807	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCATCAGGCTCTGTGGG	NA	False	NA	-4	True	AATAAA	-14	NA	126957000	126931520	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_126932242_126932498_126932612_126932783_126932949_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
transcript_58340.known	chr9	+	4133	24	FSM	ENSMUSG00000032267.9	ENSMUST00000047349.8	4133	24	0	0	0	0	multi-exon	FALSE	canonical	3	612	junction_8	78.9995812484415	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTAGCATGACCCTTT	NA	False	NA	13	True	AATAAA	-19	NA	48896764	48953810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935205_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
transcript_58342.known	chr9	+	4109	24	FSM	ENSMUSG00000032267.9	ENSMUST00000213874.2	4109	24	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_12	166.491369690667	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTATGTAGCATGACCCTTT	NA	False	NA	13	True	AATAAA	-19	NA	48896713	48953810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48935280_48935386_48937067_48937289_48938118_48938190_48939372_48939602_48942026_48942222_48943513_48943654_48946892_48947072_48947181_48947261_48948476_48948557_48949067_48949192_48950281_48950478_48952673
transcript_58347.nnic	chr9	+	1525	13	NNC	ENSMUSG00000032267.9	novel	4109	24	NA	NA	-39	-1008	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_12	223.298551396008	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATAAATAAATAAATATTTCT	NA	False	NA	NA	False	NA	NA	NA	48896635	48934377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_48896838_48911650_48911729_48912807_48912941_48914290_48914397_48915122_48915283_48919728_48919816_48920395_48920534_48921542_48921617_48922562_48922643_48926401_48926551_48927981_48928110_48929671_48929768_48934283
transcript_5835.known	chr10	-	2458	14	FSM	ENSMUSG00000040462.14	ENSMUST00000080975.6	2458	14	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_9	22.2351605990131	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCATCAGGCTCTGTGGGGA	NA	False	NA	-2	True	AATAAA	-16	NA	126956994	126931518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_126932242_126932498_126932612_126933800_126933991_126934209_126934507_126934699_126934786_126935271_126935327_126935481_126935577_126935758_126935861_126935953_126936165_126954967_126955067_126955271_126955349_126955472_126955537_126956237_126956415_126956825
transcript_58351.known	chr9	+	2863	16	FSM	ENSMUSG00000032264.10	ENSMUST00000034803.10	2863	16	0	0	0	0	multi-exon	FALSE	canonical	3	236	junction_12	29.9965923990635	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTGAGTGTCTTTAATAA	NA	False	NA	20	True	AGTAAA	-16	NA	48966912	48990072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_48967088_48968942_48969078_48971869_48971972_48972167_48972246_48972354_48972515_48973492_48973646_48975309_48975502_48977978_48978143_48979959_48980143_48980873_48981113_48982881_48982954_48984502_48984673_48985318_48985450_48986204_48986337_48988751_48988955_48989498
transcript_58354.known	chr9	+	1272	5	FSM	ENSMUSG00000032264.10	ENSMUST00000215706.2	1272	5	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_4	30.2189923723476	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ACATACCAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	48967081	48973305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_48967088_48968942_48969078_48971869_48971972_48972167_48972246_48972354
transcript_58355.nic	chr9	+	1695	8	ISM	ENSMUSG00000032268.14	ENSMUST00000170246.8	1491	12	3067	-486	145	0	3prime_fragment	TRUE	canonical	2	3	junction_4	3.6922422809486	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGGTTGCGCTCTCCCCT	3765	False	NA	9	True	ATTAAA	-17	NA	49020446	49028887	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_49020756_49022767_49022812_49023487_49023651_49024423_49024603_49025793_49025893_49026332_49026476_49026764_49026918_49028282
transcript_58356.known	chr9	-	3628	22	FSM	ENSMUSG00000040219.5	ENSMUST00000055096.5	3628	22	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	5.49706167646225	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGAGTCTCTTTCTTCT	NA	False	NA	NA	False	AAAACA	-45	NA	49397525	49348262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_49349757_49351456_49351683_49353136_49353237_49354401_49354504_49355967_49356037_49356484_49356584_49357041_49357180_49357824_49357886_49359226_49359320_49364623_49364793_49367160_49367250_49368132_49368203_49369295_49369485_49369949_49370011_49371689_49371762_49378071_49378132_49381528_49381651_49382425_49382504_49383161_49383184_49383682_49383844_49395969_49396043_49397445
transcript_58359.known	chr9	-	2525	14	FSM	ENSMUSG00000039542.17	ENSMUST00000192584.2	2525	14	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	45.8701537594672	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAACGGTGACGAAATAATTA	8684	False	NA	NA	False	AATAAA	-22	NA	49710058	49442575	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_49443274_49454310_49454443_49455950_49456122_49456452_49456550_49456898_49457084_49457457_49457609_49468395_49468539_49476168_49476342_49476768_49476887_49477974_49478113_49478636_49478781_49479630_49479850_49481125_49481201_49709977
transcript_58361.known	chr9	-	914	2	FSM	ENSMUSG00000039542.17	ENSMUST00000217121.2	914	2	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	8520	False	NA	NA	False	NA	NA	NA	49710222	49552889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_49553559_49709977
transcript_58362.known	chr9	-	768	1	FSM	ENSMUSG00000058443.6	ENSMUST00000076364.6	768	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	19871	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGAGACAGGGAATCCC	NA	False	NA	NA	False	NA	NA	NA	50256268	50255500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_50255500_50256300
transcript_58363.known	chr9	+	1689	4	FSM	ENSMUSG00000032068.15	ENSMUST00000114474.8	1689	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	3.39934634239519	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTTTTCTATACCGTCCA	NA	False	NA	NA	False	AATAAA	-17	NA	50405824	50416782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_50406047_50410394_50410600_50412372_50412429_50415576
transcript_58365.nic	chr9	-	1174	7	NIC	ENSMUSG00000032067.7	novel	589	7	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_6	39.4574313518872	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTTTTCAGGATTTATT	7918	False	NA	NA	False	AATAAA	-18	NA	50439992	50432916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439445_50439533_50439856
transcript_58366.nic	chr9	-	1106	7	NIC	ENSMUSG00000032067.7	novel	589	7	NA	NA	3	-67	combination_of_known_junctions	FALSE	canonical	3	38	junction_6	39.4574313518872	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTCATTTGAGCAAAATGTT	7918	False	NA	NA	False	NA	NA	NA	50439992	50432984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439445_50439533_50439856
transcript_58368.known	chr9	-	1046	6	FSM	ENSMUSG00000032067.7	ENSMUST00000034570.7	1046	6	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_5	16.1294761229248	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCGTTTTCAGGATTTATT	7959	False	NA	NA	False	AATAAA	-18	NA	50439951	50432916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_50433637_50433828_50433900_50436022_50436080_50436561_50436585_50438169_50438250_50439856
transcript_58372.known	chr9	-	1003	5	FSM	ENSMUSG00000032065.7	ENSMUST00000217236.2	1003	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	10.8483869768736	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACCTGGCTATTTTTTTA	6962	False	NA	NA	False	AATAAA	-15	NA	50472625	50468118	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_50468792_50469548_50469601_50469686_50469799_50470519_50470586_50472525
transcript_58374.known	chr9	-	895	5	FSM	ENSMUSG00000032065.7	ENSMUST00000034568.7	895	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	2.27760839478607	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAATATTTCCATTTGATT	6977	False	NA	NA	False	AATAAA	-21	NA	50472610	50468224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_50468792_50469548_50469601_50469686_50469799_50470519_50470599_50472525
transcript_5838.known	chr10	+	2395	11	FSM	ENSMUSG00000006731.11	ENSMUST00000006914.11	2395	11	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_6	12.214745187682	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTACTTGTGTCTCTGTG	354	False	NA	8	True	GGGGCT	-23	NA	127001093	127008199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569_127003751_127005612_127005712_127005846_127006038_127006459_127006601_127006787_127007029_127007484
transcript_58381.known	chr9	-	1231	4	FSM	ENSMUSG00000000171.6	ENSMUST00000000175.6	1231	4	0	0	0	0	multi-exon	FALSE	canonical	3	1351	junction_3	46.783187863448	1509	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTATATAATGAAAATACAT	NA	False	NA	NA	False	AATAAA	-3	NA	50515112	50507656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_50508551_50510060_50510206_50511847_50511965_50515037
transcript_58383.known	chr9	-	3316	6	FSM	ENSMUSG00000059820.15	ENSMUST00000131351.8	3316	6	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_5	32.2800247831379	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTCTGTTACTTTTTAA	NA	False	NA	-3	True	AATAAA	-17	NA	50528764	50516539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_50519237_50520671_50520726_50521599_50521750_50523676_50523778_50526782_50526860_50528527
transcript_5839.known	chr10	+	2212	10	FSM	ENSMUSG00000006731.11	ENSMUST00000217678.2	2212	10	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_5	17.4384278371675	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTACTTGTGTCTCTGTG	356	False	NA	8	True	GGGGCT	-23	NA	127001095	127008199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127005612_127005712_127005846_127006038_127006459_127006601_127006787_127007029_127007484
transcript_58391.known	chr9	+	518	2	FSM	ENSMUSG00000039016.6	ENSMUST00000044051.6	518	2	0	0	0	0	multi-exon	FALSE	canonical	3	1341	junction_1	0	1026	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGTTCTTCTAAATCCC	8813	False	NA	21	True	AATAAA	-15	NA	50515209	50516620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_50515340_50516232
transcript_58392.known	chr9	+	1256	6	FSM	ENSMUSG00000000167.15	ENSMUST00000000171.15	1256	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	2.03960780543711	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAATTTATTTGGTGTTTTCA	NA	False	NA	NA	False	AATAAA	-37	NA	50528620	50536297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_50528899_50529745_50529950_50531054_50531179_50532244_50532491_50532920_50533187_50536159
transcript_58395.known	chr9	-	4035	14	FSM	ENSMUSG00000000168.11	ENSMUST00000034567.4	4035	14	0	0	0	0	multi-exon	FALSE	canonical	3	1156	junction_6	75.3673449604703	141	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTGATCTGTTGGTAGTT	NA	False	NA	-1	True	ATTAAA	-26	NA	50571080	50545932	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_50547855_50548755_50548893_50549220_50549384_50551523_50551640_50555325_50555434_50555740_50555834_50556338_50556407_50560931_50561074_50562050_50562239_50564921_50565049_50569144_50569299_50569464_50569590_50569987_50570090_50570490
transcript_5841.known	chr10	+	1497	6	FSM	ENSMUSG00000006731.11	ENSMUST00000219523.2	1497	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	9.6	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCAATTTTTTTGTTTTG	507	False	NA	NA	False	ATTAAA	-24	NA	127001246	127004392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127001389_127001872_127002092_127002586_127002752_127002867_127002975_127003370_127003412_127003569
transcript_58417.nic	chr9	-	1926	7	ISM	ENSMUSG00000032064.18	ENSMUST00000117646.8	5719	20	129	29872	0	840	5prime_fragment	FALSE	canonical	3	46	junction_1	1.77169096878911	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTAAAAATCCCTTTCTG	NA	False	NA	NA	False	NA	NA	NA	50639238	50603927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_-_50604992_50606770_50606884_50613219_50613328_50614421_50614654_50617424_50617551_50622142_50622273_50639085
transcript_58419.known	chr9	-	989	2	FSM	ENSMUSG00000032064.18	ENSMUST00000118707.2	989	2	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGCCTCCATGACATTCAGA	NA	False	NA	NA	False	NA	NA	NA	50639238	50621436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_50622273_50639085
transcript_5842.known	chr10	-	2218	16	FSM	ENSMUSG00000019467.16	ENSMUST00000019611.15	2218	16	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_14	11.8291541916102	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCACTGAGGTTGTTGTCTT	4937	False	NA	-7	True	AATAAA	-12	NA	127025888	127018397	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_127018813_127019066_127019279_127019517_127019699_127019880_127020082_127020260_127020339_127020531_127020583_127020755_127020849_127020951_127021042_127021155_127021226_127021443_127021548_127021728_127021796_127021951_127022029_127022747_127022844_127022976_127023192_127025363_127025479_127025735
transcript_58420.known	chr9	-	1242	4	FSM	ENSMUSG00000032062.4	ENSMUST00000239417.2	1242	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	2.16024689946929	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGATTGATTGTTCCTG	2131	False	NA	NA	False	AATAAA	-17	NA	50657821	50650990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_50652050_50652595_50652661_50653560_50653599_50657741
transcript_58422.known	chr9	+	836	4	FSM	ENSMUSG00000032060.11	ENSMUST00000216755.2	836	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	6.0184900284226	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCCTCGTGTTTGCAAAC	NA	False	NA	NA	False	AATAAA	-20	NA	50664319	50667936	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_50664396_50664485_50664778_50665811_50665935_50667591
transcript_58423.known	chr9	-	552	2	FSM	ENSMUSG00000038086.5	ENSMUST00000217159.2	552	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTGCTGCTTCTGT	NA	False	NA	-7	True	AATAAA	-16	NA	50663654	50662377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_50662752_50663476
transcript_58424.known	chr9	-	773	2	FSM	ENSMUSG00000038086.5	ENSMUST00000042790.5	773	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGTTTGTGCTGCTTCTGT	NA	False	NA	-7	True	AATAAA	-16	NA	50663593	50662377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_50663034_50663476
transcript_58425.known	chr9	+	2873	15	FSM	ENSMUSG00000032059.14	ENSMUST00000034561.11	2873	15	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_3	29.092042533578	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTTAAGATTTTTTTAA	NA	False	NA	24	True	TTTAAA	-31	NA	50686318	50754828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_50686819_50687843_50687980_50690269_50690405_50694557_50694629_50699452_50699542_50700796_50700933_50703362_50703451_50703601_50703708_50711418_50711542_50713237_50713393_50716601_50716732_50717521_50717670_50719976_50720107_50733884_50734016_50754033
transcript_58429.known	chr9	+	2658	5	FSM	ENSMUSG00000037845.15	ENSMUST00000042391.13	2658	5	0	0	0	0	multi-exon	TRUE	canonical	3	72	junction_2	7.15454401062709	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGTGGAGCATGTGTCCTT	NA	False	NA	NA	False	NA	NA	NA	50679535	50684648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_50679756_50679987_50680145_50681409_50681614_50681931_50682091_50682730
transcript_5843.nnic	chr10	-	3057	11	NNC	ENSMUSG00000025417.9	novel	3307	10	NA	NA	-20	-4	at_least_one_novel_splicesite	FALSE	canonical	2	25	junction_1	114.041264461597	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTCACAGAAGTTTTTG	NA	False	NA	-8	True	AATAAA	-19	NA	127047474	127032939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_127034618_127034913_127035014_127035181_127035286_127035457_127035726_127036052_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482_127042580_127044738_127044837_127047206
transcript_58433.known	chr9	-	2082	4	FSM	ENSMUSG00000037971.11	ENSMUST00000042468.9	2082	4	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_2	3.74165738677394	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AGAAAAATAAAAATAAAAAA	NA	False	NA	NA	False	NA	NA	NA	50679752	50674127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_50675317_50675523_50675591_50675995_50676227_50679157
transcript_58434.known	chr9	+	3430	15	FSM	ENSMUSG00000032058.15	ENSMUST00000114437.9	3430	15	0	0	0	0	multi-exon	FALSE	canonical	3	496	junction_13	51.8120622627431	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTTAATTTCACAGTTTC	-13	True	NA	NA	False	NA	NA	NA	50768236	50792731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50791138
transcript_58436.known	chr9	+	2195	17	FSM	ENSMUSG00000032058.15	ENSMUST00000174628.8	2195	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	228.008189271789	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTGCACTTTTTGCCGAA	NA	False	NA	NA	False	AATAAA	-13	NA	50768223	50804097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_50768399_50769135_50769227_50770150_50770252_50772830_50773064_50773665_50773814_50777743_50777900_50778127_50778243_50778625_50778697_50778962_50779098_50781362_50781537_50784946_50785008_50789337_50789493_50789997_50790141_50790509_50790602_50794773_50794896_50802936_50803018_50803955
transcript_58438.nnic	chr9	-	776	4	NNC	ENSMUSG00000032051.10	novel	875	4	NA	NA	340	0	at_least_one_novel_splicesite	FALSE	canonical	2	31	junction_3	202.09073869593	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGTGTGTTTGGTGAT	1377	False	NA	-5	True	AATAAA	-17	NA	51874506	51854605	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_51854950_51859876_51860007_51868372_51868498_51874329
transcript_58439.known	chr9	-	875	4	FSM	ENSMUSG00000032051.10	ENSMUST00000034552.8	875	4	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_2	28.5929284186765	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGTGTGTTTGGTGAT	1037	False	NA	-5	True	AATAAA	-17	NA	51874846	51854605	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_51854950_51859876_51860007_51868372_51868498_51874570
transcript_58446.known	chr9	-	3128	18	FSM	ENSMUSG00000053289.9	ENSMUST00000065630.8	3128	18	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_8	33.3641956320396	351	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTATTGTTTTTATTGTAT	NA	False	NA	-3	True	AATAAA	-17	NA	53159353	53009934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_53010563_53028452_53028590_53060802_53060860_53068470_53068633_53071197_53071318_53115358_53115831_53118765_53118855_53120988_53121077_53124535_53124638_53134959_53135045_53136772_53136936_53140424_53140552_53145127_53145318_53146562_53146684_53147699_53147859_53149347_53149479_53151776_53151838_53159117
transcript_5845.known	chr10	-	3307	10	FSM	ENSMUSG00000025417.9	ENSMUST00000013970.9	3307	10	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_3	43.7148447820759	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACAGAAGTTTTTGTTTT	NA	False	NA	-4	True	AATAAA	-23	NA	127047424	127032935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_127035014_127035181_127035286_127035457_127035726_127036052_127036167_127036708_127036748_127036907_127037055_127041543_127041688_127042482_127042580_127044738_127044837_127047206
transcript_58452.nic	chr9	-	1485	9	ISM	ENSMUSG00000034218.17	ENSMUST00000232179.2	9787	64	-24	79114	-24	3365	5prime_fragment	FALSE	canonical	3	33	junction_1	29.3428015022424	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGTGTCATTTCAATCAT	NA	False	NA	NA	False	NA	NA	NA	53448064	53429781	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_-_53429970_53431291_53431456_53433347_53433587_53435646_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
transcript_58453.nic	chr9	-	1357	9	ISM	ENSMUSG00000034218.17	ENSMUST00000232179.2	9787	64	4	79214	4	3265	5prime_fragment	FALSE	canonical	3	33	junction_1	29.3428015022424	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGGAAAATAGACGTAGGC	NA	False	NA	NA	False	NA	NA	NA	53448036	53429881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_-_53429970_53431291_53431456_53433347_53433587_53435646_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
transcript_58454.known	chr9	-	1243	7	FSM	ENSMUSG00000034218.17	ENSMUST00000132403.2	1243	7	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	25.1837690233655	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGAAAACTAGTGGCATTTC	NA	False	NA	NA	False	AATAAA	-8	NA	53447973	53433146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_53433587_53435646_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
transcript_58458.nic	chr9	-	1333	6	ISM	ENSMUSG00000034218.17	ENSMUST00000132403.2	1243	7	-244	2214	-177	-2214	5prime_fragment	FALSE	canonical	3	46	junction_1	21.0770016843004	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CCCTTAAAACAGACCAAAGA	NA	False	NA	NA	False	ATTAAA	-18	NA	53448217	53435360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_-_53435813_53438472_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
transcript_5846.nic	chr10	-	1933	7	NIC	ENSMUSG00000040415.16	novel	1944	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	15	junction_6	51.2694407571953	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031597	127026246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_127026909_127027204_127027423_127028477_127029227_127029598_127029673_127030278_127030343_127030550_127030682_127031562
transcript_58460.nic	chr9	-	847	5	ISM	ENSMUSG00000034218.17	ENSMUST00000132403.2	1243	7	-135	5251	-68	96	5prime_fragment	FALSE	canonical	3	85	junction_4	8.07774721070176	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGACGACTCAGAGTTTAAT	NA	False	NA	-3	True	AATAAA	-17	NA	53448108	53438397	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_-_53438638_53442930_53443077_53444959_53445073_53445164_53445267_53447862
transcript_58462.known	chr9	-	3405	12	FSM	ENSMUSG00000032047.6	ENSMUST00000034547.6	3405	12	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_5	11.4912830779187	99	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAACATTAAAGTTACAGA	NA	False	NA	NA	False	NA	NA	NA	53521682	53491821	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_53493966_53494736_53494895_53496139_53496205_53498752_53498867_53500477_53500574_53502606_53502758_53503267_53503412_53505705_53505807_53505993_53506090_53506582_53506701_53509384_53509433_53521512
transcript_58465.known	chr9	-	3585	19	FSM	ENSMUSG00000032030.17	ENSMUST00000034529.14	3585	19	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_17	44.7831882587348	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAATGTGTGGGTATACG	NA	False	NA	57	True	AATGAA	-14	NA	53578811	53528323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_53529311_53532459_53532584_53533157_53533277_53534081_53534244_53534934_53535111_53535457_53535582_53537162_53537295_53540474_53540608_53543572_53543638_53545031_53545140_53545284_53545416_53546271_53546366_53553817_53553899_53553980_53554127_53555786_53555929_53557966_53558144_53566571_53566672_53569870_53569981_53578337
transcript_58471.known	chr9	-	2971	2	FSM	ENSMUSG00000055069.4	ENSMUST00000068449.4	2971	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAGAACATAAATTAT	NA	False	NA	NA	False	NA	NA	NA	53617532	53595409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_53598037_53617188
transcript_58473.known	chr9	+	2558	8	FSM	ENSMUSG00000042195.10	ENSMUST00000048670.10	2558	8	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	9.10931346681706	132	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGGAAGTAGAATCACAATGT	NA	False	NA	39	True	ATTAAA	-15	NA	53678821	53725438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_53679179_53705121_53705298_53708294_53708423_53713901_53714062_53715329_53715487_53716969_53717023_53718158_53718314_53724066
transcript_58479.known	chr9	+	1812	12	FSM	ENSMUSG00000032279.12	ENSMUST00000215273.2	1812	12	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	727.622881616047	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGAATGATGTAATTTT	NA	False	NA	55	True	AATAAA	-22	NA	54493764	54511229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_54493828_54497141_54497205_54499444_54499540_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
transcript_5848.nic	chr10	-	1802	6	NIC	ENSMUSG00000040415.16	novel	1944	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_5	47.7811678383859	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031597	127026246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_127026909_127027204_127027423_127028477_127029227_127029598_127029673_127030278_127030343_127031562
transcript_58482.known	chr9	+	2403	11	FSM	ENSMUSG00000032279.12	ENSMUST00000167866.2	2403	11	0	0	0	0	multi-exon	FALSE	canonical	3	1656	junction_1	98.4146330583008	1262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGAGGCGTTTGCATTCTC	NA	False	NA	35	True	AATAAA	-15	NA	54493794	54511945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_54493828_54497141_54497205_54499677_54499762_54502449_54502565_54503285_54503474_54504118_54504253_54505676_54505780_54505882_54505948_54506876_54506962_54508345_54508499_54510565
transcript_58487.known	chr9	-	2880	14	FSM	ENSMUSG00000032281.12	ENSMUST00000034822.12	2880	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	2.25320284859643	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCGGATGTCTTTTGTCAATG	NA	False	NA	NA	False	ATTAAA	-26	NA	54569154	54512160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_54512761_54516299_54516547_54516978_54517119_54522019_54522238_54523150_54523382_54525305_54525488_54529149_54529327_54529720_54529871_54529959_54530041_54534714_54534836_54535153_54535243_54535689_54535911_54549879_54549981_54568832
transcript_5849.nic	chr10	-	2229	6	NIC	ENSMUSG00000040415.16	novel	1944	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	15	junction_5	54.0244389142544	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031597	127026246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_127027423_127028477_127029227_127029598_127029673_127030278_127030343_127030550_127030682_127031562
transcript_58490.known	chr9	-	1290	11	FSM	ENSMUSG00000061559.16	ENSMUST00000121204.8	1290	11	0	0	0	0	multi-exon	FALSE	canonical	3	544	junction_10	185.351584832717	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCACCTGCATTTGTGAAC	5421	False	NA	-8	True	AATAAA	-14	NA	54641803	54624447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637946_54638670_54638722_54641652
transcript_58491.known	chr9	-	1162	11	FSM	ENSMUSG00000061559.16	ENSMUST00000130368.8	1162	11	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_9	343.30050975785	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGCATTTGTGAACGTGCT	5443	False	NA	-3	True	AATAAA	-19	NA	54641781	54624442	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_54624720_54626534_54626614_54627543_54627637_54630117_54630212_54631334_54631429_54631609_54631759_54634872_54635046_54635453_54635560_54637917_54637941_54638670_54638722_54641758
transcript_58499.known	chr9	+	802	4	FSM	ENSMUSG00000032291.9	ENSMUST00000034830.9	802	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	35.3679076125361	222	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCGGGCTCTTTCTTTGA	NA	False	NA	18	True	ATTAAA	-14	NA	54672031	54680394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_54672256_54672766_54672946_54675667_54675782_54680109
transcript_5850.nic	chr10	-	2098	5	NIC	ENSMUSG00000040415.16	novel	1944	6	NA	NA	0	0	intron_retention	FALSE	canonical	3	21	junction_4	47.5939859646153	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031597	127026246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_-_127027423_127028477_127029227_127029598_127029673_127030278_127030343_127031562
transcript_58500.known	chr9	+	5770	22	FSM	ENSMUSG00000032293.9	ENSMUST00000034843.9	5770	22	0	0	0	0	multi-exon	TRUE	canonical	3	193	junction_6	38.4690587449917	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGACTCGTTGTGTTTTAT	2626	False	NA	14	True	AATAAA	-19	NA	54771072	54819814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_54771181_54772590_54772681_54788636_54788803_54789602_54789741_54791180_54791400_54793158_54793229_54793773_54793958_54794551_54794692_54798286_54798459_54799758_54799857_54802662_54802780_54803723_54803884_54804770_54804907_54806671_54806757_54807233_54807391_54807731_54807857_54811174_54811280_54811378_54811522_54813852_54814001_54814084_54814208_54816025_54816212_54816914
transcript_58505.known	chr9	+	5110	5	FSM	ENSMUSG00000035878.14	ENSMUST00000039742.8	5110	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	1.29903810567666	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TACCTTTTGGTCTTTTTTTC	NA	False	NA	13	True	ATTAAA	-26	NA	54824566	54857208	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_54825143_54827757_54828109_54829478_54829619_54844422_54844607_54853349
transcript_58507.known	chr9	+	1165	9	FSM	ENSMUSG00000032301.14	ENSMUST00000034848.14	1165	9	0	0	0	0	multi-exon	FALSE	canonical	3	1650	junction_8	116.746252616519	1113	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTATGGTGAAAGGATACTT	NA	False	NA	2	True	AATAAA	-15	NA	54858073	54865314	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164_54862254_54863540_54863672_54864094_54864219_54864918
transcript_58513.known	chr9	+	562	6	FSM	ENSMUSG00000032301.14	ENSMUST00000169008.8	562	6	0	0	0	0	multi-exon	FALSE	canonical	3	1724	junction_4	75.8957179292745	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTTTTGTTCTGCTTTA	NA	False	NA	NA	False	AATAAA	-8	NA	54858088	54862316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_54858188_54859365_54859393_54859624_54859668_54859962_54860126_54861946_54862025_54862164
transcript_58514.known	chr9	+	2081	13	FSM	ENSMUSG00000032307.17	ENSMUST00000122441.2	2081	13	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_1	238.508371038745	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAATTATGAAAGATACCTA	NA	False	NA	NA	False	AATAAA	-39	NA	55057366	55114092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_55057686_55070251_55070354_55075486_55075592_55083474_55083532_55087756_55087898_55090385_55090471_55092187_55092249_55092953_55093045_55099125_55099185_55102270_55102320_55102707_55102804_55110984_55111052_55113243
transcript_58517.known	chr9	-	721	6	FSM	ENSMUSG00000032311.18	ENSMUST00000144939.8	721	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	7.93977329651168	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCACGGGGGAAGAGCAAA	247	False	NA	75	True	TTTAAA	-43	NA	55149745	55128505	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_55128693_55133899_55134039_55135136_55135223_55143723_55143804_55149344_55149492_55149663
transcript_5852.known	chr10	-	1944	6	FSM	ENSMUSG00000040415.16	ENSMUST00000038217.14	1944	6	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	37.9705148766777	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031578	127026246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_127026909_127027204_127027423_127028477_127029227_127029598_127029673_127030278_127030504_127031562
transcript_58528.known	chr9	+	2112	7	FSM	ENSMUSG00000032309.16	ENSMUST00000034859.15	2112	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	369.828526331987	1025	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTGTTGTAATTATTGCT	NA	False	NA	11	True	AATAAA	-18	NA	55116208	55131717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_55116473_55116636_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
transcript_5853.known	chr10	-	1925	6	FSM	ENSMUSG00000040415.16	ENSMUST00000130855.8	1925	6	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	50.9643012313521	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCCACACCCGTCTTCTGTT	NA	False	NA	0	True	AATAAA	-25	NA	127031578	127026246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_127026909_127027204_127027423_127028477_127029208_127029598_127029673_127030278_127030504_127031562
transcript_58537.known	chr9	+	2009	6	FSM	ENSMUSG00000032309.16	ENSMUST00000146201.8	2009	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	392.751626349274	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTGGTGTTGTAATTATTG	NA	False	NA	9	True	AATAAA	-16	NA	55116473	55131715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_55116776_55121192_55121281_55122186_55122283_55125598_55125764_55128305_55128472_55130523
transcript_58538.known	chr9	+	2408	11	FSM	ENSMUSG00000032313.12	ENSMUST00000034862.5	2408	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	1.98997487421324	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGGCTAGTAGAGGTTT	NA	False	NA	NA	False	AATAAA	-18	NA	55234232	55345629	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_55234285_55284763_55284898_55287962_55288152_55305024_55305180_55307857_55307932_55321147_55321205_55322223_55322363_55325291_55325408_55337558_55337749_55342474_55342538_55344390
transcript_58539.known	chr9	-	1392	12	FSM	ENSMUSG00000032314.15	ENSMUST00000034866.9	1392	12	0	0	0	0	multi-exon	FALSE	canonical	3	1517	junction_8	89.5680174619608	850	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATTACTATCAGAAACATGC	NA	False	NA	-13	True	AATAAA	-30	NA	55419527	55361791	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_55362047_55368903_55368985_55372077_55372144_55389556_55389640_55392553_55392623_55393985_55394088_55394683_55394795_55396113_55396214_55402845_55402929_55403025_55403108_55407301_55407449_55419314
transcript_58543.nnic	chr9	-	1271	8	NNC	ENSMUSG00000034007.11	novel	2911	22	NA	NA	-13	-148056	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_7	23.1640114956678	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCAGTTCTTCCTAGATTC	NA	False	NA	NA	False	AATAAA	-14	NA	55845416	55798968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_55799573_55802565_55802667_55819323_55819519_55822183_55822255_55823270_55823389_55826807_55826872_55828549_55828623_55845371
transcript_58544.known	chr9	+	2024	7	FSM	ENSMUSG00000032320.8	ENSMUST00000114276.3	2024	7	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_5	26.0666879795309	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGTGCACCTGAGACATTT	960	False	NA	18	True	ATTAAA	-19	NA	55949140	55966361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_55949489_55949858_55949965_55952415_55952613_55960190_55960305_55963442_55963540_55964710_55964854_55965342
transcript_58547.known	chr9	+	1863	15	FSM	ENSMUSG00000032322.15	ENSMUST00000059206.8	1863	15	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_9	2.96922995583236	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTCTTCCTTTGCTGGGGT	NA	False	NA	NA	False	AATAAA	-27	NA	55997245	56036172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_55997729_56021513_56021615_56022346_56022422_56027584_56027620_56027830_56027938_56030042_56030106_56030545_56030645_56031031_56031078_56031877_56031958_56032407_56032507_56033210_56033308_56033865_56033957_56034768_56034822_56035010_56035145_56035872
transcript_58548.known	chr9	-	1716	7	FSM	ENSMUSG00000032324.12	ENSMUST00000034876.10	1716	7	0	0	0	0	multi-exon	FALSE	canonical	3	718	junction_1	24.1522945769824	240	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCATGTACATTTTAATTATT	NA	False	NA	-3	True	AATAAA	-17	NA	56068341	56043167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_56044020_56052772_56052857_56053058_56053212_56053797_56053900_56054369_56054445_56054670_56054863_56068083
transcript_58551.known	chr9	+	3778	10	FSM	ENSMUSG00000032329.5	ENSMUST00000034879.5	3778	10	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_9	43.8482230730809	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATGTGACCAGTTTTGCT	NA	False	NA	11	True	ATTAAA	-17	NA	56325892	56404220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897_56396114_56397105_56397249_56401816
transcript_58553.known	chr9	+	1700	9	FSM	ENSMUSG00000032329.5	ENSMUST00000215269.2	1700	9	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_3	23.7276210354093	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTCTCTTCCCTGATGAG	NA	False	NA	NA	False	AATAAA	-18	NA	56325927	56397609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897_56396114_56397105
transcript_58556.known	chr9	+	2468	8	FSM	ENSMUSG00000032329.5	ENSMUST00000217518.2	2468	8	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_3	24.8160580006954	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAATAGTTCTCAGAACA	NA	False	NA	NA	False	NA	NA	NA	56326107	56397565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_56326216_56374641_56374735_56381814_56381960_56384465_56384679_56388881_56389015_56389891_56389924_56394899_56394976_56395897
transcript_58557.known	chr9	+	988	1	FSM	ENSMUSG00000118653.2	ENSMUST00000239472.2	988	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	389	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAAACATATGGT	NA	False	NA	NA	False	AATAAA	-33	NA	56344740	56345728	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_56344700_56345700
transcript_58558.known	chr9	+	1782	3	FSM	ENSMUSG00000032329.5	ENSMUST00000214869.2	1782	3	0	0	0	0	multi-exon	FALSE	canonical	3	221	junction_1	18.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAATCAAAGAGAAAAAAAA	NA	False	NA	NA	False	TATAAA	-13	NA	56326113	56383401	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_56326216_56374641_56374735_56381814
transcript_58560.known	chr9	+	924	1	FSM	ENSMUSG00000032288.10	ENSMUST00000034827.10	924	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	238	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTTGTCTGGTCGTTCT	NA	False	NA	18	True	AATAAA	-27	NA	56844758	56845682	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_56844800_56845700
transcript_58565.known	chr9	+	1391	9	FSM	ENSMUSG00000055334.5	ENSMUST00000068856.5	1391	9	0	0	0	0	multi-exon	TRUE	canonical	3	166	junction_1	20.9105236663265	171	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTTGCTTGTGGTTATTCGG	NA	False	NA	8	True	AATATA	-19	NA	56858161	56890490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_56858238_56864297_56864461_56870279_56870428_56877537_56877643_56877873_56877971_56882496_56882595_56885302_56885381_56888128_56888210_56889945
transcript_58572.known	chr9	-	1241	3	FSM	ENSMUSG00000074284.7	ENSMUST00000128125.2	1241	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTACAGACTGAAACAGGATC	NA	False	NA	NA	False	NA	NA	NA	56979091	56963913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_56964423_56964552_56965086_56978892
transcript_58573.known	chr9	-	957	2	FSM	ENSMUSG00000074284.7	ENSMUST00000135527.2	957	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACAATCCTTTATTCAG	NA	False	NA	NA	False	AATAAA	-40	NA	56979250	56964486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_56965086_56978892
transcript_58574.known	chr9	+	3820	26	FSM	ENSMUSG00000032295.16	ENSMUST00000160147.8	3820	26	0	0	0	0	multi-exon	FALSE	canonical	2	160	junction_17	33.744593641056	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCCATGCAGCCAGCCTTTC	NA	False	NA	NA	False	ATTAAA	-16	NA	57037973	57050006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046131_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
transcript_58579.nic	chr9	+	581	5	NIC	ENSMUSG00000032295.16	novel	545	5	NA	NA	-21	97	combination_of_known_junctions	FALSE	canonical	2	3	junction_4	94.8376902924149	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGATTATTGCAGTGTATA	NA	False	NA	NA	False	NA	NA	NA	57038030	57041536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57040877_57041416
transcript_5858.known	chr10	+	1784	14	FSM	ENSMUSG00000025410.11	ENSMUST00000026479.11	1784	14	0	0	0	0	multi-exon	FALSE	canonical	3	604	junction_8	36.9826442582377	340	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAACCAGAGTTTCAAAATA	9216	False	NA	16	True	AATAAA	-18	NA	127102255	127117819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127102404_127103282_127103352_127110582_127110680_127110862_127110925_127111692_127111792_127112252_127112414_127112570_127112719_127113123_127113190_127113355_127113395_127113563_127113642_127113735_127113808_127113988_127114092_127114185_127114278_127117269
transcript_58580.known	chr9	+	5086	21	FSM	ENSMUSG00000042557.15	ENSMUST00000168177.8	5086	21	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_18	80.3800970390059	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACATAAGTCCCTTGTCCTC	NA	False	NA	NA	False	AATAAA	-24	NA	56983682	57035650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_56983915_56993864_56994086_56996661_56996839_57001720_57001828_57002582_57002866_57004005_57004258_57005109_57005263_57005389_57005549_57008401_57008492_57011154_57011274_57011878_57012090_57012862_57012980_57014637_57014877_57015991_57016176_57017862_57018437_57020829_57021000_57024665_57024840_57025353_57025456_57026376_57026472_57032452_57032661_57034431
transcript_58581.known	chr9	+	3215	26	FSM	ENSMUSG00000032295.16	ENSMUST00000034836.16	3215	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	55.7568148301174	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACTATAATGGTGCCTTG	NA	False	NA	13	True	AATAAA	-14	NA	57038053	57049487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_57038174_57038442_57038566_57038815_57038940_57040805_57040877_57042373_57042552_57042728_57042919_57043976_57044084_57044241_57044353_57044565_57044659_57044752_57044870_57045028_57045125_57045203_57045350_57045680_57045805_57046137_57046254_57046352_57046439_57046529_57046686_57046894_57046993_57047153_57047249_57047482_57047588_57047665_57047823_57047918_57048063_57048384_57048495_57048589_57048670_57048847_57048997_57049089_57049200_57049278
transcript_58583.known	chr9	-	1601	10	FSM	ENSMUSG00000032298.14	ENSMUST00000186410.7	1601	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_9	6.09391520035648	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTGGTCTTTCTGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	57055589	57050353	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_57050611_57050734_57050898_57051041_57051104_57051262_57051291_57051470_57051599_57051921_57052022_57052228_57052293_57052381_57052502_57053884_57054342_57055367
transcript_58587.known	chr9	-	858	8	FSM	ENSMUSG00000032299.11	ENSMUST00000065358.9	858	8	0	0	0	0	multi-exon	FALSE	canonical	3	701	junction_7	157.218553197095	385	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTATGGGTCTTGCTTGC	6277	False	NA	-4	True	AATAAA	-15	NA	57065615	57062322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350_57064423_57065555
transcript_58588.known	chr9	-	1941	7	FSM	ENSMUSG00000032299.11	ENSMUST00000214072.2	1941	7	0	0	0	0	multi-exon	FALSE	canonical	3	898	junction_5	106.241470245851	44	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATGGGTCTTGCTTGCTTTT	6331	False	NA	0	True	AATAAA	-19	NA	57065561	57062318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_57062565_57062695_57062873_57063185_57063267_57063455_57063576_57063799_57063840_57064058_57064125_57064350
transcript_58589.known	chr9	-	4152	3	FSM	ENSMUSG00000032300.8	ENSMUST00000034846.7	4152	3	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	39.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGGGATCTAGCTTTGTAC	NA	False	NA	-7	True	ATTAAA	-21	NA	57169895	57160399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_57161613_57163668_57166424_57169711
transcript_58590.known	chr9	-	625	2	FSM	ENSMUSG00000032300.8	ENSMUST00000214583.2	625	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGATATGAGGCTGAGCCCAC	NA	False	NA	NA	False	NA	NA	NA	57169882	57161158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_57161613_57169711
transcript_58595.known	chr9	-	2744	7	FSM	ENSMUSG00000063849.7	ENSMUST00000085709.6	2744	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_2	42.49607825043	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGTGAAACCTGTGAGT	NA	False	NA	NA	False	AATAAA	-20	NA	57347379	57319935	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_57322010_57322368_57322538_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57347352
transcript_58597.known	chr9	-	1665	7	FSM	ENSMUSG00000063849.7	ENSMUST00000216365.2	1665	7	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_2	15.2059929706094	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGTGTCCTTCTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	57347390	57321243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_57322010_57322368_57322756_57327445_57327575_57328408_57328505_57342185_57342369_57344699_57344766_57347352
transcript_58598.nic	chr9	-	1259	5	NIC	ENSMUSG00000063849.7	novel	1665	7	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_2	55.6169938058504	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGACTGTGTCCTTCTTTA	NA	False	NA	-4	True	AATAAA	-17	NA	57347427	57321243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_57322010_57322368_57322538_57342185_57342369_57344699_57344766_57347352
transcript_586.nic	chr1	+	1492	9	ISM	ENSMUSG00000050122.20	ENSMUST00000238425.2	4095	29	71239	46269	41	0	internal_fragment	TRUE	canonical	3	35	junction_7	9.96164519544839	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCAGATTTCTCCCTCA	NA	False	NA	5	True	AATAAA	-22	NA	37139652	37180417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_37139908_37148076_37148232_37153541_37153681_37154738_37154871_37163031_37163131_37167964_37168142_37174515_37174647_37176810_37176969_37180171
transcript_58600.known	chr9	-	3225	7	FSM	ENSMUSG00000040722.8	ENSMUST00000046587.8	3225	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_3	41.0680329859288	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCCTCTGTGTTACTTGT	NA	False	NA	0	True	AATAAA	-20	NA	57375341	57348609	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638_57358768_57359262_57359318_57375215
transcript_58602.known	chr9	-	1025	7	FSM	ENSMUSG00000040722.8	ENSMUST00000214256.2	1025	7	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_6	45.7262385167301	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTGGGGGCCAGTGGGAC	NA	False	NA	NA	False	NA	NA	NA	57375343	57350928	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57354359_57354517_57358638_57358768_57359262_57359318_57375098
transcript_58605.known	chr9	-	675	6	FSM	ENSMUSG00000040722.8	ENSMUST00000215734.2	675	6	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	25.4715527598927	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CCAACTACACGTACTCCAAT	NA	False	NA	NA	False	NA	NA	NA	57375320	57350981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_57351148_57352654_57352773_57353354_57353457_57358638_57358768_57359262_57359318_57375215
transcript_58608.known	chr9	+	1423	1	FSM	ENSMUSG00000062309.9	ENSMUST00000080514.9	1423	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	302	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGTCTTCAGTTTTGTTC	NA	False	NA	12	True	AATAAA	-17	NA	57411308	57412731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_57411300_57412700
transcript_58611.known	chr9	+	645	5	FSM	ENSMUSG00000000088.8	ENSMUST00000000090.8	645	5	0	0	0	0	multi-exon	FALSE	canonical	3	7868	junction_4	746.021908190369	2848	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTAGGTCTTGTGATGTTGT	377	False	NA	22	True	AATAAA	-22	NA	57428561	57439709	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_57428699_57436238_57436356_57437523_57437646_57438951_57439076_57439564
transcript_58612.known	chr9	+	3001	4	FSM	ENSMUSG00000032305.16	ENSMUST00000093833.6	3001	4	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_3	8.73053390247253	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGTGAGCTGTACTGTGCTG	NA	False	NA	12	True	AATAAA	-12	NA	57444810	57450465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_57445118_57445306_57445395_57446093_57446172_57447937
transcript_58618.known	chr9	-	1780	8	FSM	ENSMUSG00000032306.15	ENSMUST00000034856.15	1780	8	0	0	0	0	multi-exon	FALSE	canonical	3	201	junction_3	33.2393914333151	177	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCAGTCAGCCTTTGGTAT	8951	False	NA	-8	True	ATTAAA	-30	NA	57460046	57451538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_57452222_57452477_57452687_57453676_57453851_57455810_57455994_57456319_57456462_57457855_57458057_57459429_57459558_57459986
transcript_58629.known	chr9	+	2340	9	FSM	ENSMUSG00000040188.11	ENSMUST00000045791.11	2340	9	0	0	0	0	multi-exon	TRUE	canonical	3	243	junction_4	15.3927742788621	112	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACTGGCCCTGATGTCAAT	NA	False	NA	13	True	AATAAA	-15	NA	57468225	57496078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_57468394_57484475_57484545_57484921_57485021_57486715_57486834_57488066_57488196_57488772_57488933_57490134_57490237_57494362_57494484_57494704
transcript_58638.known	chr9	-	2496	13	FSM	ENSMUSG00000032316.9	ENSMUST00000065330.8	2496	13	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_10	47.1024297556813	177	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGGTACCAGTGTGTC	9068	False	NA	-9	True	AATAAA	-21	NA	57673143	57657991	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
transcript_58640.nnic	chr9	-	1756	13	NNC	ENSMUSG00000032316.9	novel	2496	13	NA	NA	20	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_12	94.4161885836675	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGGTACCAGTGTGTC	9845	False	NA	-9	True	AATAAA	-21	NA	57672366	57657991	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672319
transcript_58643.nic	chr9	-	1715	12	NIC	ENSMUSG00000032316.9	novel	2496	13	NA	NA	13	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_9	91.1213884772205	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCCCTGGTACCAGTGTGTC	9752	False	NA	-9	True	AATAAA	-21	NA	57672459	57657991	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_57658405_57659019_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57668106_57668324_57668998_57669151_57672356
transcript_58645.known	chr9	-	2363	12	FSM	ENSMUSG00000032316.9	ENSMUST00000215233.2	2363	12	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_9	49.1934955049954	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCCCTGGTACCAGTGTG	9814	False	NA	-11	True	AATAAA	-19	NA	57672397	57657993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_57659111_57659397_57659478_57659927_57660011_57660553_57660684_57660783_57660879_57661784_57661952_57662534_57662652_57665566_57665634_57665909_57666007_57668106_57668324_57668998_57669151_57672356
transcript_58651.known	chr9	+	5708	7	FSM	ENSMUSG00000038957.14	ENSMUST00000043990.14	5708	7	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_3	27.6189347288333	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGACTCCAACTGATTCT	NA	False	NA	NA	False	GATAAA	-16	NA	57615822	57659782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_57615983_57620663_57620845_57623230_57623551_57634468_57634805_57647172_57647327_57651867_57652086_57655443
transcript_58656.known	chr9	+	4277	6	FSM	ENSMUSG00000038957.14	ENSMUST00000137245.8	4277	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	95.7613700820952	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATTACAGTTGACAGGCCT	NA	False	NA	NA	False	NA	NA	NA	57615837	57658686	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_57615983_57620663_57620845_57634468_57634805_57647172_57647327_57651867_57652086_57655443
transcript_58660.nic	chr9	-	4064	9	NIC	ENSMUSG00000004661.16	novel	4171	9	NA	NA	-14	0	intron_retention	FALSE	canonical	3	208	junction_3	16.1303285769385	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGCCAGTATGGGATCCTT	NA	False	NA	-6	True	AATAAA	-17	NA	57744090	57697638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_57699969_57702218_57702318_57703389_57703636_57703754_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741516_57743964
transcript_58661.nic	chr9	-	3907	9	NIC	ENSMUSG00000004661.16	novel	4171	9	NA	NA	-14	0	intron_retention	FALSE	canonical	3	208	junction_3	16.1303285769385	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGAAAAAAAAAAAAAAATGT	NA	False	NA	NA	False	NA	NA	NA	57744090	57697795	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_57699969_57702218_57702318_57703389_57703636_57703754_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741516_57743964
transcript_58663.known	chr9	-	1969	8	FSM	ENSMUSG00000004661.16	ENSMUST00000098686.4	1969	8	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_2	15.8603600340019	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTCTTTTTCTTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-15	NA	57744076	57701969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_57702318_57703389_57703636_57703754_57704072_57705324_57705509_57717447_57717521_57717691_57717764_57740898_57741516_57743964
transcript_58670.nnic	chr9	+	1431	12	NIC	ENSMUSG00000055720.11	novel	1319	11	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_1	95.5400482857649	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818258	57837251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_57818291_57818999_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
transcript_58671.nic	chr9	+	1479	12	NIC	ENSMUSG00000055720.11	novel	1364	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	57	junction_1	84.997131696865	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818262	57837251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_57818343_57818999_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
transcript_58672.nic	chr9	+	1566	12	NIC	ENSMUSG00000055720.11	novel	1426	11	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_1	95.7810002035894	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818287	57837251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_57818455_57818999_57819109_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
transcript_58676.known	chr9	+	1364	11	FSM	ENSMUSG00000055720.11	ENSMUST00000163329.2	1364	11	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_1	59.3140792729686	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818268	57837251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_57818343_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
transcript_58678.known	chr9	+	1319	11	FSM	ENSMUSG00000055720.11	ENSMUST00000216925.2	1319	11	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	82.3315856764583	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCCGTGTCCAGTGCTTG	NA	False	NA	16	True	AATATA	-17	NA	57818261	57837251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_57818291_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
transcript_58680.known	chr9	+	1426	11	FSM	ENSMUSG00000055720.11	ENSMUST00000216841.2	1426	11	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	88.2161549830869	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCTGCCGTGTCCAGTGCT	NA	False	NA	14	True	AATATA	-15	NA	57818316	57837249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_57818455_57819920_57820134_57821836_57821957_57826591_57826675_57827321_57827407_57827786_57827845_57828909_57829044_57829258_57829309_57829733_57829902_57830437_57830561_57836995
transcript_58681.known	chr9	+	2169	2	FSM	ENSMUSG00000097604.2	ENSMUST00000181289.2	2169	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAAAAATGCCA	NA	False	NA	NA	False	NA	NA	NA	57905323	57914734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_57905602_57912843
transcript_58688.known	chr9	-	4413	9	FSM	ENSMUSG00000036986.17	ENSMUST00000135310.8	4413	9	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	114.3314807916	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACCCTAACATTCTGATT	2204	False	NA	-11	True	AGTAAA	-13	NA	58157016	58125368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_58127848_58128997_58129149_58136637_58136691_58137110_58137370_58137773_58137912_58140435_58140531_58141635_58142217_58154257_58154722_58156823
transcript_58689.known	chr9	-	4206	8	FSM	ENSMUSG00000036986.17	ENSMUST00000126690.8	4206	8	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	129.417848814747	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAACCCTAACATTCTGAT	2272	False	NA	-12	True	AGTAAA	-12	NA	58156948	58125369	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_58127848_58128997_58129149_58136637_58136691_58137110_58137370_58140435_58140531_58141635_58142217_58154257_58154722_58156823
transcript_58692.known	chr9	+	2236	8	FSM	ENSMUSG00000032333.7	ENSMUST00000216877.2	2236	8	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	134.059079269902	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAGTGCAGCTGGCTG	NA	False	NA	11	True	AATAAA	-22	NA	58160474	58169803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_58160683_58162216_58162324_58162816_58163097_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
transcript_58694.nic	chr9	+	1862	7	NIC	ENSMUSG00000032333.7	novel	1984	7	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_1	122.45498038962	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAGTGCAGCTGGCTG	NA	False	NA	11	True	AATAAA	-22	NA	58160446	58169803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_58160561_58162216_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
transcript_58695.known	chr9	+	1984	7	FSM	ENSMUSG00000032333.7	ENSMUST00000034883.7	1984	7	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	85.7729561108861	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGAAGTGCAGCTGGCTG	NA	False	NA	11	True	AATAAA	-22	NA	58160446	58169803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_58160683_58162216_58162324_58163922_58164073_58164303_58164508_58167509_58167706_58168080_58168297_58168928
transcript_58696.known	chr9	-	3297	7	FSM	ENSMUSG00000032334.11	ENSMUST00000061799.10	3297	7	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_6	4.22952584681651	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGCAAAGCTACTGTCA	9357	False	NA	NA	False	NA	NA	NA	58220469	58195020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_58196201_58198037_58198154_58199851_58199948_58200855_58201013_58201641_58201780_58204903_58205013_58218968
transcript_58697.known	chr9	+	843	3	FSM	ENSMUSG00000097651.3	ENSMUST00000181967.3	843	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	1.5	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGGCTGATACTTGCT	NA	False	NA	16	True	NA	NA	NA	58362404	58376918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_58362640_58374083_58374201_58376427
transcript_58700.known	chr9	+	841	8	FSM	ENSMUSG00000032336.18	ENSMUST00000176896.8	841	8	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	128.573492046933	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTAAAGCATGCCTTATTTAG	51	False	NA	NA	False	NA	NA	NA	58489723	58559245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58550968_58557779_58557802_58558540_58558616_58559141
transcript_58702.known	chr9	+	2024	8	FSM	ENSMUSG00000032336.18	ENSMUST00000085651.12	2024	8	0	0	0	0	multi-exon	FALSE	canonical	3	310	junction_5	36.1815151813233	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTTGGAATAATACTCTTTA	537	False	NA	NA	False	AATAAA	-16	NA	58489574	58560161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_58489810_58530969_58531139_58535116_58535212_58547951_58548086_58550811_58551086_58557779_58557802_58558540_58558616_58559141
transcript_58710.known	chr9	-	883	6	FSM	ENSMUSG00000074269.11	ENSMUST00000098674.6	883	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	244.73054570282	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAACAGGTGAATCCACT	9050	False	NA	17	True	AATAAA	-40	NA	58648842	58560138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_58560390_58565039_58565127_58567456_58567655_58573115_58573200_58619298_58619389_58648669
transcript_58712.nnic	chr9	-	865	6	NNC	ENSMUSG00000074269.11	novel	883	6	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	297.891658157794	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTATCAATGTTTTATT	9011	False	NA	-5	True	AATAAA	-18	NA	58648881	58560160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_58560390_58565039_58565127_58567491_58567655_58573115_58573200_58619298_58619389_58648669
transcript_58716.nnic	chr9	-	816	5	NIC	ENSMUSG00000074269.11	novel	883	6	NA	NA	-39	0	combination_of_known_splicesites	FALSE	canonical	3	25	junction_3	258.205828749081	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTTTATCAATGTTTTATT	9011	False	NA	-5	True	AATAAA	-18	NA	58648881	58560160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_58560390_58565039_58565127_58567456_58567655_58619298_58619389_58648669
transcript_58719.known	chr9	-	2518	16	FSM	ENSMUSG00000025235.9	ENSMUST00000026265.8	2518	16	0	0	0	0	multi-exon	TRUE	canonical	3	108	junction_2	13.5581054068119	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTATGATCACTGTCTGTCTT	NA	False	NA	-18	True	AATAAA	-2	NA	59260791	59229272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_59230266_59230670_59230873_59231319_59231462_59232072_59232143_59234469_59234642_59234738_59234892_59235862_59235932_59237700_59237756_59240762_59240891_59243646_59243701_59247093_59247167_59248369_59248482_59249770_59249835_59251342_59251423_59253082_59253135_59260692
transcript_58729.known	chr9	-	6971	14	FSM	ENSMUSG00000025234.12	ENSMUST00000171975.8	6971	14	0	0	0	0	multi-exon	TRUE	canonical	3	295	junction_6	43.7741649239926	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACATTGTTAAACTGTGAC	NA	False	NA	NA	False	AATAAA	-17	NA	59393897	59295540	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_59300662_59302160_59302274_59303633_59303895_59310650_59310709_59313007_59313139_59315158_59315231_59315657_59315701_59319707_59319815_59322052_59322120_59333405_59333462_59333896_59333990_59344053_59344199_59361684_59361753_59393261
transcript_58734.known	chr9	-	475	1	FSM	ENSMUSG00000090516.2	ENSMUST00000171632.2	475	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGGACTCTGGCCAATGCCC	NA	False	NA	NA	False	NA	NA	NA	59379516	59379041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_59379000_59379500
transcript_58738.known	chr9	+	1996	14	FSM	ENSMUSG00000025232.9	ENSMUST00000026262.8	1996	14	0	0	0	0	multi-exon	FALSE	canonical	3	1100	junction_8	84.5408762866438	849	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGTTTGGGTTGCTTGTGT	NA	False	NA	32	True	AATAAA	-24	NA	59446822	59472392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_59447260_59461415_59461509_59462621_59462688_59464154_59464202_59464570_59464682_59465316_59465419_59466606_59466740_59468179_59468361_59469225_59469310_59469578_59469652_59470149_59470334_59470506_59470598_59471165_59471271_59472103
transcript_58751.known	chr9	-	1126	4	FSM	ENSMUSG00000049526.9	ENSMUST00000214580.2	1126	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAATTCAGAGGAAATATAT	NA	False	NA	NA	False	AATAAA	-14	NA	59447130	59425968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_59426558_59426901_59427034_59427371_59427522_59446875
transcript_5876.known	chr10	-	2962	22	FSM	ENSMUSG00000040354.15	ENSMUST00000171564.8	2962	22	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_3	467.860135698655	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTCTCCTGGTCTACCC	NA	False	NA	-7	True	AATAAA	-26	NA	127147655	127132090	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_127132310_127132409_127132503_127132585_127132610_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
transcript_58771.known	chr9	+	2041	11	FSM	ENSMUSG00000032294.18	ENSMUST00000163694.4	2041	11	0	0	0	0	multi-exon	FALSE	canonical	3	941	junction_8	6644.99062151332	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTAGATGACGACTTCTGGC	1869	False	NA	NA	False	GGGGCT	-26	NA	59563855	59586472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582311_59582479_59585326_59585509_59586010
transcript_58775.known	chr9	+	2432	11	FSM	ENSMUSG00000032294.18	ENSMUST00000034834.16	2432	11	0	0	0	0	multi-exon	FALSE	canonical	3	15664	junction_5	1339.70741581884	8710	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTTTGTTTTGTTTT	1664	False	NA	20	True	AATAAA	-20	NA	59563650	59586658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_59563933_59572482_59572650_59573145_59573238_59575831_59575964_59576195_59576383_59577749_59578021_59578857_59579009_59579203_59579357_59582850_59583018_59585326_59585509_59586010
transcript_5878.known	chr10	-	2939	21	FSM	ENSMUSG00000040354.15	ENSMUST00000037290.12	2939	21	0	0	0	0	multi-exon	FALSE	canonical	3	1393	junction_15	206.401332360041	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCTCCTGGTCTACCCT	NA	False	NA	-6	True	AATAAA	-27	NA	127147655	127132089	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_127132310_127132409_127132503_127132741_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
transcript_588.nic	chr1	+	1296	8	NIC	ENSMUSG00000050122.20	novel	4717	27	NA	NA	-55	0	combination_of_known_junctions	FALSE	canonical	2	12	junction_1	16.9440857179231	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCAGATTTCTCCCTCA	NA	False	NA	5	True	AATAAA	-22	NA	37139693	37180417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_37139908_37153541_37153681_37154738_37154871_37163031_37163131_37167964_37168142_37174515_37174647_37176810_37176969_37180171
transcript_5881.known	chr10	-	3065	20	FSM	ENSMUSG00000040354.15	ENSMUST00000145275.8	3065	20	0	0	0	0	multi-exon	FALSE	canonical	3	1393	junction_14	176.876657025606	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCGAGCCCTCTCCTGGTCT	NA	False	NA	-11	True	AATAAA	-22	NA	127147547	127132094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_127132310_127132409_127132814_127133334_127133522_127133603_127133709_127133790_127133923_127135116_127135331_127135817_127135936_127136046_127136143_127136278_127136450_127138680_127138756_127140053_127140256_127141290_127141495_127141609_127141727_127144126_127144234_127144369_127144549_127144776_127144853_127145872_127146008_127146088_127146168_127146312_127146404_127147389
transcript_58822.known	chr9	-	1663	4	FSM	ENSMUSG00000051705.14	ENSMUST00000217093.2	1663	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	6.59966329107444	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCGGGTGTGTGGTGCA	6429	False	NA	-22	True	AATAAA	-15	NA	59657921	59643752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_59645152_59647222_59647316_59657544_59657655_59657860
transcript_58823.known	chr9	-	3570	3	FSM	ENSMUSG00000051705.14	ENSMUST00000163586.9	3570	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	2.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGAATTGAGACAGTCTCTC	6429	False	NA	NA	False	NA	NA	NA	59657921	59641735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_59645152_59647222_59647316_59657860
transcript_58824.known	chr9	-	1559	3	FSM	ENSMUSG00000051705.14	ENSMUST00000216329.2	1559	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	2	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCTGCGGGTGTGTGGTGCA	6440	False	NA	-22	True	AATAAA	-15	NA	59657910	59643752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_59645152_59657544_59657655_59657860
transcript_58825.known	chr9	-	3682	2	FSM	ENSMUSG00000051705.14	ENSMUST00000051039.5	3682	2	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGTCTCTGTCTCCTCA	6418	False	NA	-4	True	AATAAA	-18	NA	59657932	59641541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_59645152_59657860
transcript_58828.known	chr9	-	2037	8	FSM	ENSMUSG00000032292.9	ENSMUST00000034831.3	2037	8	0	0	0	0	multi-exon	TRUE	canonical	1	3	junction_6	3.8438925848782	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCAGGCTCTCTGTTGAGA	NA	False	NA	55	True	NA	NA	NA	59857400	59850053	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_59850803_59854244_59854351_59854595_59854837_59855645_59855804_59855885_59856108_59856207_59856312_59856464_59856592_59857070
transcript_58829.nic	chr9	-	1770	7	ISM	ENSMUSG00000032292.9	ENSMUST00000034831.3	2037	8	692	54	-31	-54	3prime_fragment	FALSE	canonical	1	3	junction_6	3.89087250997625	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCACTTTGCTGTATTTTAT	NA	False	NA	1	True	NA	NA	NA	59856708	59850107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_-_59850803_59854244_59854351_59854595_59854837_59855645_59855804_59855885_59856108_59856207_59856312_59856464
transcript_58831.known	chr9	+	4428	19	FSM	ENSMUSG00000034485.11	ENSMUST00000050183.7	4428	19	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_8	35.7857134056402	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGAGATGAGTGTGT	NA	False	NA	28	True	AATAAA	-29	NA	60701829	60787652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_60701975_60748121_60748256_60753274_60753364_60755903_60755969_60756726_60756785_60757411_60757483_60757582_60757690_60761597_60761786_60763479_60763518_60766421_60766500_60768333_60768442_60770672_60770706_60770881_60770981_60773646_60773684_60774713_60774767_60776856_60779566_60781314_60781468_60783643_60783710_60787455
transcript_58833.nnic	chr9	+	1025	3	NNC	ENSMUSG00000111147.2	novel	3468	7	NA	NA	20146	208	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_2	2	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTCATTTTTATCTTATG	NA	False	NA	NA	False	NA	NA	NA	60959639	60966606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_60959709_60960349_60960452_60965752
transcript_58837.known	chr9	-	499	3	FSM	ENSMUSG00000007892.9	ENSMUST00000008036.9	499	3	0	0	0	0	multi-exon	FALSE	canonical	3	11557	junction_2	345.5	19350	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGTGGACTGGTCTCACTTG	NA	False	NA	-28	True	AATAAA	-14	NA	61821824	61820565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_61820804_61821169_61821245_61821638
transcript_58838.nic	chr9	-	3466	24	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_17	70.6780554601603	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGTGTGGTGGCCATT	NA	False	NA	-3	True	AATAAA	-18	NA	61854082	61824561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61840510_61840553_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
transcript_58839.known	chr9	-	3398	23	FSM	ENSMUSG00000032254.11	ENSMUST00000034815.9	3398	23	0	0	0	0	multi-exon	FALSE	canonical	3	138	junction_5	42.1913194628531	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGTGTGGTGGCCATT	NA	False	NA	-3	True	AATAAA	-18	NA	61854056	61824561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831186_61831499_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
transcript_58840.nic	chr9	-	3154	23	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_16	70.2958329649162	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGTGTGGTGGCCATT	NA	False	NA	-3	True	AATAAA	-18	NA	61854082	61824561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61840510_61840553_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
transcript_58841.nic	chr9	-	3112	22	NIC	ENSMUSG00000032254.11	novel	3398	23	NA	NA	-26	0	combination_of_known_junctions	FALSE	canonical	3	131	junction_5	37.7146464629211	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTTGTGTGGTGGCCATT	NA	False	NA	-3	True	AATAAA	-18	NA	61854082	61824561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_61824962_61826181_61826253_61826893_61826976_61827156_61827240_61828300_61828529_61831913_61832094_61832251_61832426_61832811_61832970_61833641_61833801_61834318_61834446_61834629_61834750_61834835_61834916_61836945_61837049_61839082_61839205_61839356_61839470_61842661_61842833_61843944_61844055_61844363_61844501_61844711_61844818_61851484_61851614_61852631_61852702_61853893
transcript_58851.known	chr9	-	3566	8	FSM	ENSMUSG00000032278.12	ENSMUST00000034817.11	3566	8	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	2.96922995583236	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGGGAGTTCAGGAATGC	NA	False	NA	NA	False	ATTAAA	-21	NA	61934138	61861019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_61863570_61868810_61868953_61871009_61871107_61876062_61876190_61879907_61880114_61883353_61883482_61896274_61896421_61933968
transcript_58853.known	chr9	-	4850	5	FSM	ENSMUSG00000032252.15	ENSMUST00000185675.7	4850	5	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_3	11.5974135047432	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTACTTGGATATTTCTCTT	NA	False	NA	NA	False	AATAAA	-21	NA	62029892	61964529	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_61968318_61975666_61975913_61977296_61977896_61995710_61995802_62029766
transcript_58854.known	chr9	-	1922	3	FSM	ENSMUSG00000032252.15	ENSMUST00000185510.2	1922	3	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	70	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGGACATATGGTGTCTGTT	NA	False	NA	NA	False	AATAAA	-14	NA	62029891	61987601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_61989308_61995710_61995802_62029766
transcript_58857.known	chr9	-	3042	2	FSM	ENSMUSG00000046846.5	ENSMUST00000056949.5	3042	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACTGGACTCAGAGTTCTC	NA	False	NA	NA	False	NA	NA	NA	62189490	62178010	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_62180846_62189283
transcript_58864.known	chr9	+	2113	7	FSM	ENSMUSG00000032249.15	ENSMUST00000085519.13	2113	7	0	0	0	0	multi-exon	FALSE	canonical	3	492	junction_5	26.6546848081575	531	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGGCTTCCTTTGAGTCTT	NA	False	NA	25	True	AATAAA	-25	NA	62248610	62286094	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_62248837_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
transcript_58867.known	chr9	+	924	7	FSM	ENSMUSG00000032249.15	ENSMUST00000135395.8	924	7	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	197.739517210563	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCCCTCCTATTCCTGC	NA	False	NA	NA	False	NA	NA	NA	62249356	62284954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_62249534_62279001_62279152_62279343_62279467_62280766_62280960_62281935_62282034_62284581_62284646_62284835
transcript_5888.known	chr10	+	890	4	FSM	ENSMUSG00000025408.16	ENSMUST00000026475.15	890	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	321.555593949165	1133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTCACTTTTTCTTCTT	NA	False	NA	29	True	AGTAAA	-18	NA	127126642	127132157	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127126761_127129580_127129629_127131189_127131348_127131591
transcript_58884.known	chr9	+	864	5	FSM	ENSMUSG00000032246.15	ENSMUST00000034777.14	864	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	39.344631145812	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGAATTGGTGTTTCCCT	NA	False	NA	9	True	AATAAA	-21	NA	62765385	62783203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_62765444_62765523_62765555_62775958_62776100_62778547_62778737_62782758
transcript_58885.known	chr9	+	2142	7	FSM	ENSMUSG00000032245.13	ENSMUST00000034776.13	2142	7	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_1	5.87130498460285	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGCCGTGGCTGTTTCTAG	NA	False	NA	13	True	AATAAA	-21	NA	62746066	62759288	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_62746237_62751851_62751967_62753235_62753335_62754247_62754437_62754866_62754923_62756390_62756514_62757898
transcript_58886.known	chr9	+	699	4	FSM	ENSMUSG00000032246.15	ENSMUST00000163820.3	699	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	45.4923681023043	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGCATGTGGAATTGGTG	NA	False	NA	2	True	AATAAA	-14	NA	62765402	62783196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_62765444_62765523_62765555_62778547_62778737_62782758
transcript_58887.nic	chr9	+	618	3	ISM	ENSMUSG00000032246.15	ENSMUST00000215968.2	526	4	10493	-70	10493	70	3prime_fragment	FALSE	canonical	3	41	junction_1	28	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTAATAAGGTCTGTC	2974	False	NA	NA	False	AATAAA	-22	NA	62775908	62782996	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_62776100_62778547_62778737_62782758
transcript_58888.nic	chr9	+	819	3	ISM	ENSMUSG00000032246.15	ENSMUST00000034777.14	864	5	10523	6	10493	0	3prime_fragment	FALSE	canonical	3	41	junction_1	28	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATGTGGAATTGGTGT	2974	False	NA	3	True	AATAAA	-15	NA	62775908	62783197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_62776100_62778547_62778737_62782758
transcript_58889.nic	chr9	+	785	2	ISM	ENSMUSG00000032246.15	ENSMUST00000215968.2	526	4	12774	-70	12774	70	3prime_fragment	FALSE	canonical	3	97	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACTGTAATAAGGTCTGTC	5255	False	NA	NA	False	AATAAA	-22	NA	62778189	62782996	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_62778737_62782758
transcript_58890.nic	chr9	+	986	2	ISM	ENSMUSG00000032246.15	ENSMUST00000163820.3	699	4	12787	-1	12774	0	3prime_fragment	FALSE	canonical	3	97	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGCATGTGGAATTGGTGT	5255	False	NA	3	True	AATAAA	-15	NA	62778189	62783197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_62778737_62782758
transcript_58892.nic	chr9	-	2106	14	NIC	ENSMUSG00000032405.11	novel	5564	14	NA	NA	0	2048	combination_of_known_junctions	FALSE	canonical	3	43	junction_1	23.8180976391468	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTAGTTATTTTGGTTTTC	NA	False	NA	NA	False	GATAAA	-21	NA	62888165	62788113	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_62788546_62792053_62792092_62794589_62794733_62799407_62799589_62800410_62800542_62803112_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
transcript_58893.known	chr9	-	5564	14	FSM	ENSMUSG00000032405.11	ENSMUST00000098651.6	5564	14	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	15.6049605221996	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCTGTGTTCTGTAAAATG	NA	False	NA	0	True	AATAAA	-17	NA	62888161	62785649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_62789544_62792053_62792092_62794589_62794733_62799407_62799589_62800410_62800542_62803112_62803274_62810040_62810115_62820031_62820138_62826632_62826768_62827739_62827831_62830562_62830611_62830852_62830938_62859037_62859483_62888129
transcript_58897.known	chr9	-	2310	22	FSM	ENSMUSG00000058444.9	ENSMUST00000034920.11	2310	22	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_19	9.60607328677695	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCGTTTGTCTCAGCAAGT	NA	False	NA	-1	True	AATAAA	-18	NA	63285184	63071049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_63071473_63101483_63101530_63104592_63104655_63124274_63124308_63124620_63124648_63142570_63142601_63164258_63164331_63169425_63169477_63170395_63170470_63188300_63188350_63193680_63193743_63200805_63200888_63200977_63201047_63210402_63210443_63229484_63229550_63237189_63237239_63245366_63245435_63246362_63246404_63250668_63250739_63265274_63265343_63279018_63279068_63284404
transcript_5890.known	chr10	+	600	3	FSM	ENSMUSG00000025408.16	ENSMUST00000139091.2	600	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	357	49	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCATGGTCAGCCTGCACCAA	NA	False	NA	NA	False	NA	NA	NA	127126661	127131934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127126761_127131189_127131348_127131591
transcript_58906.known	chr9	+	5294	10	FSM	ENSMUSG00000037257.9	ENSMUST00000041551.9	5294	10	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_6	53.7134601610168	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTAAGTGGAGACATGAAAAT	9214	False	NA	NA	False	AATAAA	-17	NA	63509941	63551870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_63510054_63523967_63524159_63524269_63524367_63524789_63524880_63526429_63526514_63542586_63542670_63543665_63543766_63546321_63546427_63546874_63546925_63547488
transcript_58917.known	chr9	-	2957	19	FSM	ENSMUSG00000032400.19	ENSMUST00000122091.8	2957	19	0	0	0	0	multi-exon	FALSE	canonical	3	273	junction_16	368.954800838434	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTGCCTGGTTTAATCTT	NA	False	NA	0	True	ACTAAA	-20	NA	64080386	64044425	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_64045342_64047172_64047299_64051361_64051475_64054106_64054203_64054551_64054689_64056680_64056710_64057437_64057595_64060166_64060247_64060832_64060933_64062445_64062502_64063294_64063389_64065976_64066049_64068102_64068259_64068652_64068724_64069845_64070046_64071628_64071748_64072644_64072741_64075894_64075947_64080099
transcript_5892.nic	chr10	+	2154	16	NIC	ENSMUSG00000040345.11	novel	2217	16	NA	NA	250	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_15	22.38352568793	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	7339	False	NA	10	True	ATTAAA	-16	NA	127158082	127165812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_127158301_127158562_127158760_127160987_127161069_127161391_127161500_127161712_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164885_127165367
transcript_5893.known	chr10	+	1782	15	FSM	ENSMUSG00000040345.11	ENSMUST00000069548.7	1782	15	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	20.6447107422859	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	8881	False	NA	10	True	ATTAAA	-16	NA	127159624	127165812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127159700_127160987_127161069_127161391_127161500_127161712_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
transcript_58942.known	chr9	+	1538	10	FSM	ENSMUSG00000032399.9	ENSMUST00000034966.9	1538	10	0	0	0	0	multi-exon	FALSE	canonical	3	16882	junction_3	1427.06559842995	1212	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTGCTTTGTTCCACATG	NA	False	NA	16	True	AATAAA	-13	NA	64080656	64085948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_64080716_64082105_64082278_64082475_64082583_64082865_64083005_64083373_64083499_64084222_64084353_64084602_64084760_64085002_64085087_64085178_64085300_64085504
transcript_58945.known	chr9	+	1228	3	FSM	ENSMUSG00000032398.8	ENSMUST00000034965.8	1228	3	0	0	0	0	multi-exon	FALSE	canonical	3	413	junction_2	26	260	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACTGCCAGCAACCTCT	1628	False	NA	NA	False	NA	NA	NA	64086555	64090414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_64086703_64087780_64087871_64089423
transcript_58947.known	chr9	-	2436	11	FSM	ENSMUSG00000004936.9	ENSMUST00000005066.9	2436	11	0	0	0	0	multi-exon	TRUE	canonical	3	469	junction_6	51.6454257412987	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTTTTGTGGCACACCTT	NA	False	NA	-13	True	AATAAA	-38	NA	64160913	64093051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_64094081_64094572_64094619_64094958_64095021_64098548_64098614_64098734_64098937_64100983_64101109_64111712_64111765_64112392_64112471_64119865_64120013_64121680_64121892_64160494
transcript_5895.nic	chr10	+	1736	12	NIC	ENSMUSG00000040345.11	novel	1782	15	NA	NA	1303	0	intron_retention	FALSE	canonical	3	51	junction_1	7.05117070169648	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	NA	False	NA	10	True	ATTAAA	-16	NA	127161494	127165812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
transcript_58951.known	chr9	+	1211	8	FSM	ENSMUSG00000032397.8	ENSMUST00000034964.7	1211	8	0	0	0	0	multi-exon	FALSE	canonical	3	540	junction_1	675.401679425976	386	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTCAGGATTTGAGTTT	9569	False	NA	14	True	AATAAA	-14	NA	64188888	64212074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_64188935_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
transcript_58953.known	chr9	+	1841	8	FSM	ENSMUSG00000032397.8	ENSMUST00000216594.2	1841	8	0	0	0	0	multi-exon	FALSE	canonical	3	410	junction_1	719.77354715471	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAATAAAGTTGAGGCTG	9565	False	NA	NA	False	NA	NA	NA	64188884	64212706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_64188935_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
transcript_58955.nic	chr9	+	1092	8	NIC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	-39	-173	combination_of_known_junctions	FALSE	canonical	3	479	junction_1	696.204344855674	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTTTAGTAAGTCTGTT	9504	False	NA	21	True	AATACA	-24	NA	64188823	64211901	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_64188930_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
transcript_58956.nic	chr9	+	1265	8	NIC	ENSMUSG00000032397.8	novel	1841	8	NA	NA	-39	0	combination_of_known_junctions	FALSE	canonical	3	479	junction_1	696.204344855674	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTCAGGATTTGAGTTT	9504	False	NA	14	True	AATAAA	-14	NA	64188823	64212074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_64188930_64195395_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
transcript_58957.nic	chr9	+	1081	8	NIC	ENSMUSG00000032397.8	novel	1211	8	NA	NA	-22	-173	combination_of_known_junctions	FALSE	canonical	3	673	junction_1	630.170951862611	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTATTTTAGTAAGTCTGTT	9521	False	NA	21	True	AATACA	-24	NA	64188840	64211901	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_64188930_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
transcript_58958.nic	chr9	+	1254	8	NIC	ENSMUSG00000032397.8	novel	1211	8	NA	NA	-22	0	combination_of_known_junctions	FALSE	canonical	3	673	junction_1	630.170951862611	514	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTCAGGATTTGAGTTT	9521	False	NA	14	True	AATAAA	-14	NA	64188840	64212074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_64188930_64195389_64195526_64196991_64197065_64197655_64197732_64201291_64201415_64201604_64201669_64208323_64208531_64211588
transcript_5896.nnic	chr10	+	1484	11	NNC	ENSMUSG00000040345.11	novel	1782	15	NA	NA	1800	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_1	20.5951450589696	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	NA	False	NA	10	True	ATTAAA	-16	NA	127161991	127165812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_127162111_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
transcript_58988.known	chr9	-	3605	17	FSM	ENSMUSG00000032396.18	ENSMUST00000068367.14	3605	17	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_16	6.60699203495812	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTGGCTCAAATTGATTC	5056	False	NA	NA	False	NA	NA	NA	64248570	64214038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_64214631_64214711_64214887_64215561_64215708_64217448_64217628_64217723_64217879_64218727_64219262_64221215_64221309_64221834_64222083_64224969_64225132_64226364_64226535_64229683_64229864_64231903_64231983_64232989_64233167_64236714_64236851_64238068_64238198_64246760_64246915_64248274
transcript_58991.known	chr9	-	2336	5	FSM	ENSMUSG00000004771.13	ENSMUST00000172298.8	2336	5	0	0	0	0	multi-exon	TRUE	canonical	3	899	junction_3	39.0160223497988	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGTGGTGAGATTACATTCT	NA	False	NA	-2	True	AATAAA	-21	NA	64645040	64622580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_64624271_64632783_64632865_64633905_64634100_64635515_64635712_64644865
transcript_58995.known	chr9	-	508	4	FSM	ENSMUSG00000004771.13	ENSMUST00000171100.2	508	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	456.48244459368	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTCCGCCCACCACTGAGAA	NA	False	NA	NA	False	NA	NA	NA	64645012	64624184	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_64624271_64632783_64632865_64633905_64634100_64644865
transcript_58998.known	chr9	+	2820	13	FSM	ENSMUSG00000034263.14	ENSMUST00000170517.9	2820	13	0	0	0	0	multi-exon	TRUE	canonical	3	115	junction_1	33.6860505254029	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTATTAGGATTTTGACTGT	NA	False	NA	NA	False	ATTAAA	-17	NA	64868186	64894260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_64868221_64868975_64869281_64871607_64871886_64873971_64874080_64879254_64879411_64879973_64880093_64880499_64880643_64882898_64882992_64885418_64885564_64887056_64887191_64889270_64889390_64891259_64891326_64893140
transcript_58999.known	chr9	+	2837	13	FSM	ENSMUSG00000034263.14	ENSMUST00000037504.7	2837	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	58.8451357377991	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGACTCCTAAGAAGCAAT	NA	False	NA	NA	False	AATATA	-18	NA	64868218	64893990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_64868540_64868975_64869281_64871607_64871886_64873971_64874080_64879254_64879411_64879973_64880093_64880499_64880643_64882898_64882992_64885418_64885564_64887056_64887191_64889270_64889390_64891259_64891326_64893140
transcript_59.known	ERCC-00171	+	489	1	FSM	ERCC-00171A	DQ854994	489	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1805	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00171_+_0_500
transcript_5900.known	chr10	-	5319	2	FSM	ENSMUSG00000047492.6	ENSMUST00000059718.6	5319	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTGGCTGTGTGTTCTTT	5446	False	NA	NA	False	NA	NA	NA	127190280	127184725	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_127186881_127187116
transcript_59002.known	chr9	-	2709	11	FSM	ENSMUSG00000033629.7	ENSMUST00000036615.7	2709	11	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_1	24.7620677650313	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACTTGTGCTTAAACATCA	NA	False	NA	-1	True	ATTAAA	-23	NA	64928975	64894264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_64895812_64897598_64897731_64898255_64898363_64899538_64899652_64905476_64905605_64908262_64908374_64911538_64911591_64912889_64913055_64913842_64913917_64917755_64917799_64928738
transcript_59005.known	chr9	+	4808	21	FSM	ENSMUSG00000032393.16	ENSMUST00000034960.14	4808	21	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_17	12.9379287368574	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGTATTTCCCCCATGAC	NA	False	NA	31	True	ATTAAA	-28	NA	64939695	64989933	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_64939906_64942156_64942294_64944250_64944524_64949545_64949659_64950967_64951142_64952901_64953071_64958671_64958783_64960326_64960456_64961050_64961113_64961700_64961802_64962109_64962288_64963073_64963234_64967484_64967565_64970708_64970862_64971100_64971237_64973632_64973779_64981720_64981868_64983017_64983171_64985244_64985388_64985955_64986068_64988012
transcript_59007.known	chr9	+	2482	7	FSM	ENSMUSG00000032392.12	ENSMUST00000069000.9	2482	7	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	17.0269394392142	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCAAGTTGTCTGTGACTG	NA	False	NA	NA	False	AATAAA	-15	NA	65121971	65146500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_65122146_65122630_65122915_65133334_65133473_65137087_65137295_65140950_65141123_65143922_65144065_65145135
transcript_59009.known	chr9	+	2518	6	FSM	ENSMUSG00000032392.12	ENSMUST00000213396.2	2518	6	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	11.7915223783869	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCTGTGACTGTCTGCA	NA	False	NA	NA	False	AATAAA	-21	NA	65122426	65146506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_65122915_65133334_65133473_65137087_65137295_65140950_65141123_65143922_65144065_65145135
transcript_5901.known	chr10	+	1946	16	FSM	ENSMUSG00000040345.11	ENSMUST00000219026.2	1946	16	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	22.9759294335035	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAACATACATAGACTAAATA	8832	False	NA	10	True	ATTAAA	-16	NA	127159575	127165812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127159700_127160213_127160329_127160987_127161069_127161391_127161500_127161712_127161772_127161916_127162011_127162200_127162297_127162421_127162521_127162741_127162884_127162963_127163075_127163506_127163606_127163767_127163846_127163962_127164017_127164258_127164394_127164746_127164853_127165367
transcript_59011.known	chr9	+	2885	14	FSM	ENSMUSG00000015357.11	ENSMUST00000015501.11	2885	14	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_12	30.6779414999533	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTCAATTTGTTTTTTTTGT	6151	False	NA	NA	False	AATAAA	-31	NA	65201541	65237939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749_65215905_65217433_65217594_65219379_65219422_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231582_65234063_65234171_65237095
transcript_59014.nic	chr9	+	2205	13	ISM	ENSMUSG00000015357.11	ENSMUST00000015501.11	2885	14	-17	3622	-17	-3622	5prime_fragment	FALSE	canonical	3	317	junction_12	30.2833837827501	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATTTTGTGACTCATTTTG	6134	False	NA	NA	False	GATAAA	-21	NA	65201524	65234317	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749_65215905_65217433_65217594_65219379_65219422_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231582_65234063
transcript_59015.known	chr9	+	2809	13	FSM	ENSMUSG00000015357.11	ENSMUST00000113824.8	2809	13	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_5	89.4905333292609	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAATTTGTTTTTTTTGTC	6186	False	NA	NA	False	AATAAA	-32	NA	65201576	65237940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_65201848_65207182_65207347_65209129_65209248_65215749_65215905_65217433_65217594_65223925_65224103_65224610_65224776_65225944_65226034_65228100_65228266_65229825_65230126_65231488_65231582_65234063_65234171_65237095
transcript_59019.known	chr9	+	2419	5	FSM	ENSMUSG00000041837.5	ENSMUST00000048184.4	2419	5	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_1	28.3846349280733	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTGCCCCTGATTTATT	NA	False	NA	42	True	AATAAA	-25	NA	65253385	65266925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_65254291_65261891_65262031_65263526_65263764_65263999_65264088_65265875
transcript_59022.known	chr9	+	2042	9	FSM	ENSMUSG00000059183.13	ENSMUST00000074792.7	2042	9	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_5	22.1472345903501	99	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGGCCTGCCCAGGG	NA	False	NA	NA	False	NA	NA	NA	65343063	65360336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627_65347731_65348894_65348971_65351160_65351253_65354505_65354585_65355977_65356061_65359286
transcript_59024.nic	chr9	+	973	4	ISM	ENSMUSG00000059183.13	ENSMUST00000132966.8	2563	8	-40	11692	-34	-6552	5prime_fragment	FALSE	canonical	3	143	junction_2	18.6607133363712	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAGAGAGATCAAGACTGGA	NA	False	NA	NA	False	NA	NA	NA	65343029	65348007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_65343290_65344269_65344480_65346811_65346935_65347627
transcript_59025.nic	chr9	+	555	2	ISM	ENSMUSG00000059183.13	ENSMUST00000132966.8	2563	8	-40	15135	-34	-9995	5prime_fragment	FALSE	canonical	3	184	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTTTGTTTGTTTTCTTTC	NA	False	NA	NA	False	ACTAAA	-16	NA	65343029	65344564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_65343290_65344269
transcript_59026.known	chr9	+	2680	9	FSM	ENSMUSG00000032388.8	ENSMUST00000034955.8	2680	9	0	0	0	0	multi-exon	FALSE	canonical	3	680	junction_7	65.1440711039769	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTAAGGGGTTTTATTC	7176	False	NA	NA	False	AATAAA	-16	NA	65368228	65395752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_65368437_65372545_65372633_65376056_65376219_65380919_65381001_65383121_65383268_65387660_65387770_65389142_65389251_65391723_65391865_65394114
transcript_59031.known	chr9	+	1302	8	FSM	ENSMUSG00000032388.8	ENSMUST00000213957.2	1302	8	0	0	0	0	multi-exon	FALSE	canonical	3	680	junction_7	64.9018096662888	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATTACTAGACTGGGGTGA	7182	False	NA	NA	False	AATAAA	-22	NA	65368234	65392130	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_65368437_65372545_65372633_65376056_65376219_65380919_65381001_65383121_65383268_65387660_65387770_65389142_65389251_65391723
transcript_59032.known	chr9	-	3273	6	FSM	ENSMUSG00000050721.10	ENSMUST00000068944.9	3273	6	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	5.23832034148352	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCTCTGGCCCAAGCCTGT	NA	False	NA	NA	False	AATAAA	-16	NA	65487322	65461665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_65464362_65465900_65466000_65466701_65466807_65471165_65471286_65480261_65480412_65487219
transcript_59033.nic	chr9	+	2713	11	ISM	ENSMUSG00000041064.15	ENSMUST00000131483.3	3309	13	1563	3	1558	0	3prime_fragment	FALSE	canonical	3	64	junction_5	27.7805687486776	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAACTGTGCCTCCTGCCTGG	NA	False	NA	24	True	AATAAA	-14	NA	65496065	65503246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_65496420_65496496_65496623_65496732_65496887_65496994_65497110_65497229_65497337_65499001_65499142_65499405_65499513_65500543_65500632_65500738_65500885_65501668_65501861_65502062
transcript_59035.nic	chr9	+	1976	9	NIC	ENSMUSG00000032387.16	novel	1987	8	NA	NA	-61	0	combination_of_known_junctions	FALSE	canonical	3	108	junction_1	514.959813359256	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTCTGATTTTTGCTTC	NA	False	NA	14	True	AATAAA	-14	NA	65536868	65567808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_65537005_65537987_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
transcript_59041.known	chr9	+	1987	8	FSM	ENSMUSG00000032387.16	ENSMUST00000055844.10	1987	8	0	0	0	0	multi-exon	FALSE	canonical	3	1453	junction_4	112.168059042616	563	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTCTGATTTTTGCTTC	NA	False	NA	14	True	AATAAA	-14	NA	65537840	65567808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_65538180_65556630_65556709_65557248_65557288_65557843_65557907_65558214_65558366_65558828_65558987_65566416_65566487_65566719
transcript_59054.nnic	chr9	+	1509	3	NIC	ENSMUSG00000032387.16	novel	1987	8	NA	NA	-11	0	combination_of_known_splicesites	FALSE	canonical	3	70	junction_1	814.5	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTCTGATTTTTGCTTC	NA	False	NA	14	True	AATAAA	-14	NA	65537829	65567808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_65538180_65566416_65566487_65566719
transcript_59055.nnic	chr9	+	2031	7	Fusion	ENSMUSG00000032387.16_ENSMUSG00000040652.17	novel	1987	8	NA	NA	0	0	multi-exon	TRUE	non_canonical	0	0	junction_3	181.689065897391	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTCTGTCTTTTTATTC	NA	False	NA	23	True	AATAAA	-17	NA	65537840	65597582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr9_+_65538180_65582445_65582516_65593477_65593551_65593554_65593636_65595079_65595256_65596102_65596189_65596376
transcript_59057.known	chr9	+	1843	6	FSM	ENSMUSG00000040652.17	ENSMUST00000153700.9	1843	6	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_2	155.7934530075	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTCTGTCTTTTTATTC	4604	False	NA	23	True	AATAAA	-17	NA	65583829	65597582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_65584048_65593477_65593554_65593554_65593636_65595079_65595256_65596102_65596189_65596376
transcript_59058.nic	chr9	+	2009	5	ISM	ENSMUSG00000040652.17	ENSMUST00000046490.14	1840	6	0	19	0	-19	intron_retention	FALSE	non_canonical	0	0	junction_2	171.34614089614	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGATTTAAAGTTGTGG	4604	False	NA	4	True	NA	NA	NA	65583829	65597563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_65584048_65593477_65593551_65593554_65593636_65595079_65595256_65596102
transcript_59059.nnic	chr9	+	1751	5	NIC	ENSMUSG00000040652.17	novel	1840	6	NA	NA	0	-3	combination_of_known_splicesites	FALSE	non_canonical	0	0	junction_2	197.594755750248	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTTGGTCTGTCTTTTTA	4604	False	NA	20	True	AATAAA	-14	NA	65583829	65597579	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_65584048_65593477_65593551_65593554_65593636_65595079_65595256_65596376
transcript_59061.known	chr9	-	1999	13	FSM	ENSMUSG00000032386.16	ENSMUST00000117083.2	1999	13	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_4	28.3474229673332	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTCTAGGTCATTTTT	NA	False	NA	-8	True	TATAAA	-12	NA	65792338	65740437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_65740731_65746216_65746320_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
transcript_59066.known	chr9	-	3915	12	FSM	ENSMUSG00000032386.16	ENSMUST00000122410.8	3915	12	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_1	56.3782972135042	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACAAGACTCAGTTTCCTT	NA	False	NA	NA	False	AGTAAA	-30	NA	65792337	65738417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_65740731_65758648_65758741_65760107_65760233_65764605_65764794_65765527_65765655_65771485_65771702_65773753_65773884_65780380_65780460_65782112_65782326_65786356_65786491_65788172_65788343_65792209
transcript_59070.known	chr9	-	576	2	FSM	ENSMUSG00000032386.16	ENSMUST00000139346.2	576	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTCCATGTGATGGAAAGTT	NA	False	NA	NA	False	ATTAAA	-26	NA	65816068	65805582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_65805811_65815720
transcript_59071.known	chr9	+	7208	14	FSM	ENSMUSG00000032384.17	ENSMUST00000034949.10	7208	14	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	6.58040843321514	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCCTTGTTTCATTAGCTG	NA	False	NA	27	True	AATAAA	-28	NA	65816267	65952297	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_65816451_65857297_65857347_65865610_65866004_65880760_65880802_65888184_65888255_65906676_65906829_65909328_65909564_65915021_65915108_65917344_65917430_65917703_65917853_65920028_65920137_65927083_65927195_65939520_65939628_65946858
transcript_59072.known	chr9	+	892	5	FSM	ENSMUSG00000032383.8	ENSMUST00000034947.7	892	5	0	0	0	0	multi-exon	FALSE	canonical	3	2090	junction_4	160.535626886994	1705	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGCTTGGGTGTGGGCTGTGT	1574	False	NA	16	True	AATAAA	-16	NA	65967512	65973905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_65967683_65968748_65968863_65970270_65970365_65972768_65972954_65973576
transcript_59080.known	chr9	-	2073	15	FSM	ENSMUSG00000032382.15	ENSMUST00000034946.15	2073	15	0	0	0	0	multi-exon	FALSE	canonical	2	266	junction_13	37.3054135153468	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGACTGGGCATGGTAGCA	NA	False	NA	-4	True	AATAAA	-20	NA	66032168	65995414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016798_66016911_66031888
transcript_59081.nic	chr9	-	1948	15	NIC	ENSMUSG00000032382.15	novel	2073	15	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_14	103.740477802514	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGGACTGGGCATGGTAGCA	NA	False	NA	-4	True	AATAAA	-20	NA	66033879	65995414	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_65995852_65996399_65996472_65996809_65996891_65997868_65998013_66000440_66000647_66001640_66001735_66001903_66002018_66003839_66003916_66004680_66004760_66005612_66005755_66008622_66008667_66012154_66012219_66012802_66012931_66016798_66016911_66033724
transcript_59087.known	chr9	+	1240	5	FSM	ENSMUSG00000032381.6	ENSMUST00000034945.6	1240	5	0	0	0	0	multi-exon	FALSE	canonical	3	677	junction_3	21.6376408140999	413	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGCTCACCTTAGGTTTT	1383	False	NA	17	True	AATAAA	-18	NA	66033892	66046237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_66034253_66039808_66039974_66040713_66040764_66043583_66043630_66045618
transcript_59089.nnic	chr9	+	1140	4	NIC	ENSMUSG00000032381.6	novel	1240	5	NA	NA	50	0	combination_of_known_splicesites	FALSE	canonical	3	27	junction_2	323.837750870538	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATGGCTCACCTTAGGTTTT	1433	False	NA	17	True	AATAAA	-18	NA	66033942	66046237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_66034253_66039808_66039974_66043583_66043630_66045618
transcript_59090.known	chr9	-	5607	15	FSM	ENSMUSG00000032376.13	ENSMUST00000127569.8	5607	15	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_11	15.624418356521	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTCCACCAGTCCTGATC	NA	False	NA	NA	False	AATAAA	-19	NA	66500424	66421918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66449794_66449909_66451227_66451311_66453025_66453108_66455153_66455238_66469835_66469968_66474124_66474186_66500065
transcript_59092.known	chr9	-	2797	14	FSM	ENSMUSG00000032376.13	ENSMUST00000098613.9	2797	14	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_8	36.8152271043594	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATACACTAACTTGAATCCC	NA	False	NA	NA	False	NA	NA	NA	66500318	66424508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_66425861_66427378_66427447_66427554_66427669_66427890_66428010_66434220_66434302_66434396_66434504_66437525_66437673_66447343_66447458_66451227_66451311_66453025_66453108_66455153_66455238_66469835_66469968_66474124_66474186_66500065
transcript_59093.known	chr9	-	4910	6	FSM	ENSMUSG00000032375.16	ENSMUST00000034934.15	4910	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	4.70744091837593	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTCTTGGGGGTTTGCCTT	NA	False	NA	NA	False	AATAAA	-18	NA	66702772	66682483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_66686663_66691799_66691928_66696927_66697051_66697879_66697951_66701351_66701523_66702534
transcript_59094.known	chr9	-	5205	6	FSM	ENSMUSG00000053040.14	ENSMUST00000169282.8	5205	6	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	3.03315017762062	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATGTGTGTGTGTGGAGGT	NA	False	NA	NA	False	ATTAAA	-14	NA	66742008	66722275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_66726744_66729515_66729644_66735018_66735142_66735954_66736029_66740440_66740612_66741767
transcript_59095.known	chr9	-	715	6	FSM	ENSMUSG00000053040.14	ENSMUST00000057261.9	715	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	5.41848687365763	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGCACCTCTAAGCAGCAG	NA	False	NA	NA	False	NA	NA	NA	66741930	66726565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_66726744_66729515_66729644_66735018_66735142_66735954_66736029_66740440_66740612_66741889
transcript_59097.known	chr9	-	4733	8	FSM	ENSMUSG00000036943.10	ENSMUST00000041139.9	4733	8	0	0	0	0	multi-exon	FALSE	canonical	2	19	junction_5	12.9992150469455	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGACTCTTAAGTGGATT	7751	False	NA	-1	True	AATAAA	-21	NA	66826969	66750945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_66755094_66755879_66755931_66758615_66758682_66760208_66760299_66761949_66762028_66768118_66768180_66770704_66770766_66826791
transcript_59098.known	chr9	+	452	5	FSM	ENSMUSG00000036781.14	ENSMUST00000147394.8	452	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	5638.10178051975	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCTATTTTGGTGTCAGT	NA	False	NA	-14	True	TATAAA	-15	NA	66853447	66856750	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_66853463_66854112_66854222_66854868_66854980_66855922_66856000_66856610
transcript_59101.known	chr9	+	499	4	FSM	ENSMUSG00000036781.14	ENSMUST00000040917.14	499	4	0	0	0	0	multi-exon	FALSE	canonical	3	10808	junction_3	618.277355956765	4500	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACAAGTTCCTCCCTCTGCTT	NA	False	NA	30	True	AATAAA	-14	NA	66853367	66856794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_66853463_66854112_66854222_66854868_66854980_66856610
transcript_59104.known	chr9	+	566	4	FSM	ENSMUSG00000036781.14	ENSMUST00000143044.2	566	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	5436.29598164044	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTCCTCCCTCTGCTTCTCT	NA	False	NA	34	True	AATAAA	-18	NA	66853636	66856798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_66853795_66854112_66854222_66854868_66854980_66856610
transcript_59105.nnic	chr9	-	1601	6	NNC	ENSMUSG00000032370.9	novel	2031	6	NA	NA	593	2	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	24.30308622377	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCACTTTTCAGTTCCTAAG	352	False	NA	NA	False	AATAAA	-18	NA	66882109	66862667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_66862842_66862877_66863483_66874960_66875127_66877863_66878219_66878457_66878649_66881999
transcript_59108.known	chr9	-	1259	10	FSM	ENSMUSG00000032366.16	ENSMUST00000050905.16	1259	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_8	231.62890712794	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGGTACTTTTTTATT	NA	False	NA	1	True	AATAAA	-22	NA	66956546	66935173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
transcript_59110.known	chr9	-	1208	10	FSM	ENSMUSG00000032366.16	ENSMUST00000113685.10	1208	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_8	231.53598765688	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGGTACTTTTTTATT	NA	False	NA	1	True	AATAAA	-22	NA	66956495	66935173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
transcript_59111.known	chr9	-	1898	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113707.9	1898	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	239.532846129711	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGGTCCTGTCGTCTG	NA	False	NA	0	True	AATAAA	-26	NA	66956688	66929871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
transcript_59112.known	chr9	-	1742	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113697.8	1742	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	230.863460729497	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACGCACATTTAGGACATTTT	NA	False	NA	-25	True	AATAAA	-1	NA	66956557	66929896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
transcript_59113.nic	chr9	-	1195	9	NIC	ENSMUSG00000032366.16	novel	1208	10	NA	NA	22	0	combination_of_known_junctions	FALSE	canonical	3	173	junction_1	203.579683416592	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCAGGGTACTTTTTTATT	NA	False	NA	1	True	AATAAA	-22	NA	66951167	66935173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_59115.known	chr9	-	887	9	FSM	ENSMUSG00000032366.16	ENSMUST00000113684.8	887	9	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_1	167.222110903433	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGGGCCAGGCACAGACT	NA	False	NA	-90	True	NA	NA	NA	66951015	66935329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_59117.nic	chr9	-	1195	9	NIC	ENSMUSG00000032366.16	novel	1208	10	NA	NA	-5	-8	combination_of_known_junctions	FALSE	canonical	3	173	junction_1	203.579683416592	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCTGTTTGCTATTCTTTT	NA	False	NA	-16	True	AATAAA	-13	NA	66951249	66935255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_66935450_66936945_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_59119.known	chr9	-	1797	9	FSM	ENSMUSG00000032366.16	ENSMUST00000030185.5	1797	9	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_7	240.497628626563	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAATTTGGAAGTTAGTGGT	NA	False	NA	-9	True	AATAAA	-15	NA	66956544	66936129	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_66937025_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66955067_66955194_66956300
transcript_5912.nnic	chr10	-	2105	13	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	-22	-178	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	578.432940509673	516	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCAGGGTTCCTATTACTGTG	NA	False	NA	-6	True	AATAAA	-13	NA	127358335	127353185	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_127353627_127353654_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
transcript_59121.known	chr9	-	1607	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113695.8	1607	8	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_4	182.146722648058	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATCTGGTGGTCCTGTCGTC	NA	False	NA	-2	True	AATAAA	-24	NA	66951084	66929873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_59123.known	chr9	-	1714	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113696.8	1714	8	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_1	100.853500541273	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTGGTGGTCCTGTCGTCTG	NA	False	NA	0	True	AATAAA	-26	NA	66951189	66929871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_66930724_66938310_66938381_66938733_66938797_66939747_66939824_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_59124.known	chr9	-	998	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113686.8	998	8	0	0	0	0	multi-exon	FALSE	canonical	2	15	junction_1	241.339544025019	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTATTCTTTTACTCCTTA	NA	False	NA	-8	True	AATAAA	-21	NA	66951123	66935247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_66935450_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_59131.known	chr9	-	2890	8	FSM	ENSMUSG00000032366.16	ENSMUST00000113690.8	2890	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	240.867395138521	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATCTGGTGGTCCTGTCGT	NA	False	NA	-3	True	AATAAA	-23	NA	66951244	66929874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_66931848_66938310_66938381_66938733_66938797_66939232_66939309_66940075_66940147_66941157_66941276_66943276_66943411_66950859
transcript_59135.known	chr9	+	4169	16	FSM	ENSMUSG00000032235.16	ENSMUST00000034761.15	4169	16	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	13.7737270030865	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTTGTTGTTCTTTAGA	4652	False	NA	69	True	AATACA	-21	NA	69305187	69340404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_69305336_69306227_69306370_69307758_69307864_69314398_69314649_69315541_69315662_69317393_69317532_69318054_69318172_69318588_69318749_69319483_69319666_69322619_69323644_69324215_69324392_69328942_69329073_69332938_69333024_69334132_69334184_69335597_69335857_69339322
transcript_59137.known	chr9	+	800	4	FSM	ENSMUSG00000032235.16	ENSMUST00000117610.8	800	4	0	0	0	0	multi-exon	TRUE	canonical	3	18	junction_3	51.0707570163418	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAACCATTGTTTTCTATT	4679	False	NA	NA	False	AATAAA	-34	NA	69305214	69314978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_69305336_69306227_69306370_69307758_69307864_69314546
transcript_59138.known	chr9	+	1447	13	FSM	ENSMUSG00000032231.15	ENSMUST00000034756.15	1447	13	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_7	12.0908022893437	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCGTTGCCTTTGCTTTCA	NA	False	NA	NA	False	AATAAA	-25	NA	69360901	69399077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_69361022_69371741_69371807_69374572_69374673_69383334_69383430_69386959_69387074_69390255_69390347_69391061_69391142_69392479_69392540_69393751_69393846_69394834_69394931_69395336_69395396_69396933_69397057_69398727
transcript_59139.known	chr9	+	2464	11	FSM	ENSMUSG00000011958.18	ENSMUST00000034754.12	2464	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_9	104.017354321286	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGGACTTCTCTGGTGTATA	NA	False	NA	79	True	AATGAA	-19	NA	69896747	69915599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69911587_69911624_69914345
transcript_59141.known	chr9	+	2328	10	FSM	ENSMUSG00000011958.18	ENSMUST00000085393.13	2328	10	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_9	27.3933397330153	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGGGTCTTAATTACCT	NA	False	NA	17	True	AATAAA	-17	NA	69896785	69915537	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850_69910950_69914345
transcript_59143.known	chr9	+	1465	9	FSM	ENSMUSG00000011958.18	ENSMUST00000117450.8	1465	9	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_7	18.7345769901538	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACTAGAATTTTCTGTT	NA	False	NA	NA	False	ATTAAA	-24	NA	69896796	69911289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_69896972_69902702_69902810_69903399_69903468_69904362_69904540_69906375_69906553_69908124_69908228_69909261_69909394_69910660_69910748_69910850
transcript_59145.known	chr9	+	833	7	FSM	ENSMUSG00000033543.18	ENSMUST00000133881.8	833	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	372.51159564353	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGAGAAACATGGAAGAGA	NA	False	NA	NA	False	NA	NA	NA	69919849	69929797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_69919944_69922573_69922693_69923049_69923220_69924100_69924206_69925961_69926101_69926670_69926798_69929718
transcript_59149.known	chr9	+	791	6	FSM	ENSMUSG00000033543.18	ENSMUST00000140265.8	791	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	407.297728940391	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919924	69930020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69924354_69924474_69926670_69926798_69929718
transcript_59151.known	chr9	+	888	6	FSM	ENSMUSG00000033543.18	ENSMUST00000116552.8	888	6	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	405.059798054559	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919847	69930020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69925961_69926101_69926670_69926798_69929718
transcript_59153.known	chr9	+	893	5	FSM	ENSMUSG00000033543.18	ENSMUST00000118198.8	893	5	0	0	0	0	multi-exon	FALSE	canonical	3	697	junction_3	95.7131129992124	432	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AATATTGAATATACCAGAAG	NA	False	NA	NA	False	AATAAA	-34	NA	69919831	69930148	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69926670_69926798_69929718
transcript_59155.nic	chr9	+	1079	5	NIC	ENSMUSG00000033543.18	novel	1199	6	NA	NA	-46	0	intron_retention	FALSE	canonical	3	38	junction_3	356.599477705731	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGTGAGTAATACTTGATG	NA	False	NA	18	True	AATAAA	-16	NA	69919785	69930020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_69919944_69922573_69922693_69924100_69924474_69926670_69926798_69929718
transcript_59157.known	chr9	+	622	4	FSM	ENSMUSG00000033543.18	ENSMUST00000119905.8	622	4	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	423.805248774586	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGTGAGTAATACTTGAT	NA	False	NA	17	True	AATAAA	-15	NA	69919846	69930019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_69919944_69922573_69922693_69924100_69924206_69929718
transcript_59158.known	chr9	+	1613	3	FSM	ENSMUSG00000033543.18	ENSMUST00000126120.8	1613	3	0	0	0	0	multi-exon	FALSE	canonical	3	899	junction_2	4	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAGAAAAAAAAAATC	NA	False	NA	NA	False	NA	NA	NA	69919852	69925503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_69919944_69922573_69922693_69924100
transcript_59159.known	chr9	-	3703	9	FSM	ENSMUSG00000032224.16	ENSMUST00000034749.16	3703	9	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_1	14.7118149798045	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGTGGCATGGGACTTT	NA	False	NA	-20	True	AATAAA	-19	NA	70048860	69995792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_69998174_70000772_70000966_70003332_70003469_70006369_70006477_70010101_70010232_70017539_70017659_70032205_70032480_70033468_70033566_70048594
transcript_5916.nnic	chr10	-	1801	13	NNC	ENSMUSG00000025403.6	novel	2289	12	NA	NA	-22	112	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	578.432940509673	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTAGCTGAGATTTCTGA	NA	False	NA	-10	True	CATAAA	-14	NA	127358335	127353489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_-_127353627_127353654_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
transcript_59162.known	chr9	+	4625	28	FSM	ENSMUSG00000032220.11	ENSMUST00000034745.9	4625	28	0	0	0	0	multi-exon	FALSE	canonical	3	179	junction_9	20.3906969292862	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCTTGTTTCTTCATGACA	NA	False	NA	20	True	AATAAA	-20	NA	70114649	70307048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_70114986_70194193_70194338_70204548_70204639_70208974_70209070_70223873_70223962_70227350_70227441_70229673_70229806_70232114_70232250_70234425_70234559_70242396_70242594_70245010_70245092_70245998_70246086_70248562_70248650_70249263_70249432_70250325_70250412_70253968_70254051_70260541_70260649_70266566_70266666_70269504_70269650_70274897_70275013_70275950_70276121_70277638_70277785_70283785_70283933_70285492_70285651_70286002_70286093_70291085_70291288_70303057_70303228_70306003
transcript_59165.known	chr9	-	1531	9	FSM	ENSMUSG00000032218.8	ENSMUST00000034742.8	1531	9	0	0	0	0	multi-exon	FALSE	canonical	3	1324	junction_2	68.4557338723353	445	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAAGGTATCCTGTGTATAT	NA	False	NA	-8	True	AATAAA	-14	NA	70328829	70314973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_70315312_70316561_70316673_70317402_70317544_70317936_70318174_70320123_70320283_70320383_70320555_70326075_70326190_70326282_70326412_70328698
transcript_59169.known	chr9	+	3691	21	FSM	ENSMUSG00000032212.11	ENSMUST00000049263.9	3691	21	0	0	0	0	multi-exon	FALSE	canonical	3	132	junction_6	54.986612006924	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGTTGCTAATGTATTGAGA	NA	False	NA	15	True	AATAAA	-16	NA	70450151	70499514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480738_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213_70491395_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
transcript_59170.known	chr9	+	3755	21	FSM	ENSMUSG00000032212.11	ENSMUST00000216816.2	3755	21	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_6	63.2220491600834	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTGCTAATGTATTGAGAAC	NA	False	NA	17	True	AATAAA	-18	NA	70450035	70499516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_70450364_70451251_70451340_70466318_70466384_70469057_70469256_70470095_70470144_70479430_70479459_70480792_70481208_70481857_70481908_70484003_70484123_70486563_70486714_70487233_70487338_70487448_70487613_70488064_70488151_70488582_70488747_70491213_70491395_70492034_70492160_70493205_70493371_70493916_70494232_70494332_70494478_70496238_70496400_70498860
transcript_59181.known	chr9	+	1066	2	FSM	ENSMUSG00000032212.11	ENSMUST00000215714.2	1066	2	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACATCTGGTGAGTATA	NA	False	NA	NA	False	AATAAA	-16	NA	70450075	70452029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_70450364_70451251
transcript_59182.known	chr9	+	4593	16	FSM	ENSMUSG00000054693.15	ENSMUST00000067880.13	4593	16	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_13	22.3632635264971	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGAGGTCTATGCTCTTTG	4950	False	NA	14	True	AATAAA	-19	NA	70586278	70687511	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_70586542_70610568_70610720_70625939_70626059_70629894_70630054_70647356_70647458_70651132_70651286_70653515_70653609_70655364_70655549_70661443_70661608_70668864_70669049_70673233_70673385_70674153_70674338_70675090_70675200_70676073_70676295_70683654_70683782_70685281
transcript_59185.known	chr9	+	2264	14	FSM	ENSMUSG00000013584.6	ENSMUST00000034723.6	2264	14	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	2.4973358585766	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGACTGTTTGTGTTTGTGAG	NA	False	NA	NA	False	AATAAA	-24	NA	71123070	71203525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_71123246_71159879_71159985_71160197_71160339_71162315_71162446_71169012_71169075_71171068_71171198_71171314_71171429_71188885_71188989_71190659_71190845_71192135_71192301_71192397_71192556_71193201_71193277_71200887_71200977_71202892
transcript_59186.known	chr9	-	2138	4	FSM	ENSMUSG00000032199.14	ENSMUST00000163972.2	2138	4	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	1098.58130736368	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTCCCCGAGCTCATGGCG	3447	False	NA	-33	True	AATAAA	-15	NA	71392240	71385752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_71386823_71388623_71388829_71390448_71391088_71392016
transcript_59187.known	chr9	-	2200	4	FSM	ENSMUSG00000032199.14	ENSMUST00000034720.12	2200	4	0	0	0	0	multi-exon	FALSE	canonical	3	2231	junction_1	103.721850264167	119	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTGAGTTTCCGTTCT	2470	False	NA	1	True	NA	NA	NA	71393217	71385718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_71386823_71388623_71388829_71390448_71391088_71392965
transcript_59188.known	chr9	+	4387	22	FSM	ENSMUSG00000038535.18	ENSMUST00000098576.10	4387	22	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_20	11.1161666503221	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCCTGTTTGGCTAGCCT	NA	False	NA	20	True	AATAAA	-29	NA	72182160	72271059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_72182312_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72258806_72258853_72267567_72267624_72269215
transcript_59192.known	chr9	+	3919	20	FSM	ENSMUSG00000038535.18	ENSMUST00000184517.8	3919	20	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_19	16.0630682207609	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAATAACTAGAAAAAA	NA	False	NA	NA	False	NA	NA	NA	72182160	72248375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_72182312_72202560_72202605_72203256_72203318_72205983_72206131_72208982_72209049_72209148_72209289_72215232_72215351_72219359_72219531_72219932_72220043_72226373_72226598_72229734_72229893_72230281_72230383_72231289_72231437_72236309_72236445_72238147_72238456_72238574_72238716_72242328_72242392_72246027_72246147_72246293_72246331_72246897
transcript_59196.known	chr9	-	2794	12	FSM	ENSMUSG00000090626.10	ENSMUST00000184125.8	2794	12	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_11	31.4406169897191	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTAAGTTTGCTATTTGTA	7736	False	NA	NA	False	NA	NA	NA	72399383	72367001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_72368561_72369137_72369273_72380939_72381075_72385018_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
transcript_592.nnic	chr1	+	1042	5	NNC	ENSMUSG00000050122.20	novel	1636	8	NA	NA	7229	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11.0989864402116	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATCTTCTGCATTATTTCCT	NA	False	NA	NA	False	AATAAA	-22	NA	37082017	37102730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_37082066_37083844_37084290_37090797_37090961_37099410_37099581_37102514
transcript_59202.known	chr9	-	1264	11	FSM	ENSMUSG00000090626.10	ENSMUST00000183574.8	1264	11	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	63.9844512362183	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAGGATGTTGGAAGACAAA	7736	False	NA	-5	True	AATAAA	-41	NA	72399383	72368357	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_72368561_72369137_72369273_72380939_72381075_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
transcript_59203.nnic	chr9	-	1168	11	NIC	ENSMUSG00000090626.10	novel	2054	13	NA	NA	-32	0	combination_of_known_splicesites	FALSE	canonical	3	37	junction_2	56.7235400869868	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACCTGGTGAAATAAACAGA	7844	False	NA	-32	True	AATAAA	-14	NA	72399275	72368384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_72368561_72369137_72369273_72385018_72385193_72385621_72385705_72387878_72388058_72389728_72389812_72391350_72391397_72394061_72394142_72395293_72395358_72399020_72399101_72399207
transcript_59209.nic	chr9	+	930	3	ISM	ENSMUSG00000032221.15	ENSMUST00000034746.10	5250	10	13764	3449	13764	-3449	3prime_fragment	FALSE	canonical	3	85	junction_1	11.5	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGCAGAATTAGTCATTTTT	1804	False	NA	5	True	ATTAAA	-17	NA	72359580	72365858	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_72360121_72364059_72364186_72365594
transcript_59210.known	chr9	-	793	9	FSM	ENSMUSG00000090626.10	ENSMUST00000183428.8	793	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	68.7622716320513	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACCATCAAAAAATTGAAGTG	8329	False	NA	NA	False	ACTAAA	-40	NA	72395318	72369256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_72369273_72380939_72381075_72385018_72385193_72385621_72385705_72387878_72388030_72389728_72389812_72391350_72391397_72394061_72394142_72395293
transcript_59211.known	chr9	+	1554	7	FSM	ENSMUSG00000037674.16	ENSMUST00000184015.2	1554	7	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_3	16.2933183305987	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GAGCTTTGTTTTTGGTTGGT	1172	False	NA	72	True	AATAAA	-30	NA	72440016	72519768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_72440263_72484320_72484355_72499032_72499116_72500519_72500643_72514904_72515022_72517585_72517671_72518902
transcript_59213.known	chr9	+	5499	29	FSM	ENSMUSG00000032216.16	ENSMUST00000034740.15	5499	29	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	553.560943449088	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTGGCTCCGTTACCTAAA	NA	False	NA	NA	False	AATAAA	-27	NA	72569627	72657134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499_72625667_72628582_72628701_72628778_72628944_72632298_72632365_72633692_72633813_72638183_72638256_72638503_72638559_72638659_72638719_72639873_72639940_72642291_72642522_72643948_72644071_72644155_72644227_72646321_72646418_72646736_72646811_72647449_72647511_72648909_72648970_72649934_72650043_72650821_72650919_72653688_72653762_72654407
transcript_59214.known	chr9	+	3329	10	FSM	ENSMUSG00000032216.16	ENSMUST00000184450.8	3329	10	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	906.918361033807	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCATTTGTGCCGTTAGTT	NA	False	NA	NA	False	AATAAA	-17	NA	72569763	72628072	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_72569896_72577233_72577399_72578511_72578586_72584596_72584676_72584774_72584814_72593342_72593397_72616393_72616445_72617759_72617822_72619448_72619549_72625499
transcript_59215.known	chr9	-	2193	12	FSM	ENSMUSG00000079469.11	ENSMUST00000098566.5	2193	12	0	0	0	0	multi-exon	FALSE	non_canonical	3	35	junction_5	10.1158577744251	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCCCCCCCAGCAGGAAAA	NA	False	NA	NA	False	AATAAA	-16	NA	72946981	72922977	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_72923578_72924672_72924854_72925151_72925366_72928567_72928633_72929556_72929769_72930510_72930563_72936847_72936989_72939334_72939466_72941768_72941874_72943985_72944104_72945904_72946041_72946743
transcript_59217.known	chr9	+	1975	9	FSM	ENSMUSG00000092192.8	ENSMUST00000034734.9	1975	9	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	4.44233891097922	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTACTCTGAAAACCTTATT	9178	False	NA	NA	False	AATAAA	-15	NA	72866066	72880346	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_72866280_72867863_72868012_72868539_72868674_72869196_72869423_72871372_72871519_72872450_72872561_72876313_72876468_72879254_72879361_72879608
transcript_59219.known	chr9	+	2969	9	FSM	ENSMUSG00000034563.17	ENSMUST00000085350.11	2969	9	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_8	47.1963981676568	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCTCTCAAGTCTGGCG	NA	False	NA	NA	False	AATAAA	-23	NA	72892886	72923282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211_72920609_72922613
transcript_59221.known	chr9	+	2939	8	FSM	ENSMUSG00000034563.17	ENSMUST00000150826.9	2939	8	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_6	12.4638252063927	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGACTGCTTTCTGATGTC	NA	False	NA	NA	False	NA	NA	NA	72892859	72921220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211
transcript_59223.known	chr9	+	1612	7	FSM	ENSMUSG00000092192.8	ENSMUST00000098567.9	1612	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	7.58104361036277	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCAGTTACTCTGAAAACCTT	9178	False	NA	NA	False	AATAAA	-12	NA	72866066	72880343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_72866280_72867863_72868012_72871372_72871519_72872450_72872561_72876313_72876468_72879254_72879361_72879608
transcript_59224.known	chr9	+	3151	9	FSM	ENSMUSG00000034563.17	ENSMUST00000037977.15	3151	9	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_8	60.1040764008565	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCTAGAGTTGCCAATTACG	NA	False	NA	7	True	AATAAA	-31	NA	72892710	72923622	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_72892956_72904683_72904753_72906305_72906427_72906744_72906822_72908958_72909158_72912922_72913175_72917578_72917695_72919211_72920275_72922613
transcript_59225.known	chr9	+	496	2	FSM	ENSMUSG00000098332.3	ENSMUST00000184126.3	496	2	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_1	0	167	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAAGTTATTTATAAAGGT	NA	False	NA	NA	False	AATAAA	-19	NA	72946999	72950061	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_72947148_72949713
transcript_59226.known	chr9	-	711	2	FSM	ENSMUSG00000086158.3	ENSMUST00000124565.3	711	2	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_1	0	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTTGTTTTTTTTTTT	NA	False	NA	1	True	AATAAA	-29	NA	72892658	72887003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_72887479_72892422
transcript_59227.known	chr9	+	2979	6	FSM	ENSMUSG00000032202.12	ENSMUST00000034722.5	2979	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	3.86781592116274	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AATAAAAAAAAATAATAAAA	NA	False	NA	NA	False	ATTAAA	-11	NA	72952138	73004874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_72952294_72982674_72982850_72989683_72989770_72992212_72992317_72994358_72994483_73002539
transcript_59228.known	chr9	+	1543	6	FSM	ENSMUSG00000032215.16	ENSMUST00000034738.14	1543	6	0	0	0	0	multi-exon	FALSE	canonical	3	633	junction_5	127.855230632149	349	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTACATATCTCTTATTT	8580	False	NA	13	True	AATAAA	-18	NA	73020729	73030615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_73020866_73022169_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545
transcript_59230.known	chr9	+	841	6	FSM	ENSMUSG00000032215.16	ENSMUST00000169399.8	841	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	360.437178992401	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACCTGACTTTTTTTTTGTT	8558	False	NA	133	True	NA	NA	NA	73020707	73029994	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_73020763_73022169_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545
transcript_59231.known	chr9	+	1228	4	FSM	ENSMUSG00000092622.9	ENSMUST00000173734.9	1228	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	87.8116671569837	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCAGGTGTGTATTTGA	NA	False	NA	26	True	AATAAA	-13	NA	73009679	73011720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_73009958_73010111_73010292_73010497_73011172_73011624
transcript_59232.known	chr9	+	1681	3	FSM	ENSMUSG00000092622.9	ENSMUST00000034737.13	1681	3	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_2	18.5	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCCCAGGTGTGTATTTGA	NA	False	NA	26	True	AATAAA	-13	NA	73009679	73011720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_73009958_73010111_73010292_73010497
transcript_59233.known	chr9	+	734	6	FSM	ENSMUSG00000032215.16	ENSMUST00000113505.4	734	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	360.815188150388	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATGAACTGTGGGCATAAAAT	8635	False	NA	-10	True	NA	NA	NA	73020784	73029851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_73020866_73022159_73022284_73023688_73023762_73025163_73025228_73028483_73028570_73029545
transcript_59238.known	chr9	+	429	4	FSM	ENSMUSG00000007656.14	ENSMUST00000170308.8	429	4	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_1	2500.61556865949	1236	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTATTTCTCTGACTACG	NA	False	NA	42	True	ATTAAA	-29	NA	74944958	74964120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_74945006_74945188_74945244_74959514_74959638_74963916
transcript_59239.known	chr9	+	610	2	FSM	ENSMUSG00000007656.14	ENSMUST00000169448.2	610	2	0	0	0	0	multi-exon	FALSE	canonical	3	3551	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	74944958	74945755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_74945002_74945188
transcript_59240.nic	chr9	+	1586	10	ISM	ENSMUSG00000033590.9	ENSMUST00000036555.8	6727	41	-2	47085	-2	0	5prime_fragment	FALSE	canonical	3	35	junction_4	9.15302014516399	14	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTGGGTCATGGTGTCC	5126	False	NA	NA	False	AATATA	-1	NA	75139299	75165648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_75139458_75150043_75150155_75152251_75152418_75153419_75153565_75157014_75157172_75157654_75157799_75158722_75158805_75159805_75159914_75163112_75163220_75165240
transcript_59242.nic	chr9	+	1912	10	ISM	ENSMUSG00000033590.9	ENSMUST00000036555.8	6727	41	-2	46759	-2	326	5prime_fragment	FALSE	canonical	3	35	junction_4	9.15302014516399	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAATGGCTGCCAAACT	5126	False	NA	NA	False	AATAAA	-7	NA	75139299	75165974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_75139458_75150043_75150155_75152251_75152418_75153419_75153565_75157014_75157172_75157654_75157799_75158722_75158805_75159805_75159914_75163112_75163220_75165240
transcript_59247.known	chr9	+	2105	11	FSM	ENSMUSG00000032192.10	ENSMUST00000215875.2	2105	11	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_6	3.38230690505755	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCCAAGGGGTATCTTGTC	375	False	NA	1	True	NA	NA	NA	75221417	75253153	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_75221666_75234414_75234552_75239154_75239197_75240090_75240168_75241450_75241584_75242932_75243077_75244552_75244645_75247469_75247519_75250789_75250887_75251762_75251930_75252234
transcript_59249.known	chr9	-	4072	6	FSM	ENSMUSG00000042688.17	ENSMUST00000049355.11	4072	6	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_5	19.2727787306346	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCATGTCACTGCTCAGTCTT	NA	False	NA	-48	True	AATAAA	-16	NA	75317287	75294185	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_75296430_75297448_75297651_75300646_75300812_75302791_75302937_75304860_75306034_75317144
transcript_59252.known	chr9	+	2180	12	FSM	ENSMUSG00000042487.7	ENSMUST00000048937.6	2180	12	0	0	0	0	multi-exon	FALSE	canonical	3	353	junction_2	48.4889013457617	249	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCCCTATGCTTAAGAAAAC	926	False	NA	5	True	AATAAA	-14	NA	75348817	75373714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_75348918_75352516_75353276_75354383_75354489_75355583_75355679_75356638_75356785_75357769_75357855_75361905_75362001_75362922_75363058_75364339_75364476_75365356_75365544_75368287_75368386_75373475
transcript_59259.nnic	chr9	+	2580	4	NIC	ENSMUSG00000109032.2	novel	505	4	NA	NA	-164	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_1	3.2659863237109	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGCTTTATGTGTGTGCATT	NA	False	NA	16	True	AATAAA	-21	NA	75375733	75393963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_75375966_75388729_75388947_75390380_75390480_75391931
transcript_59264.known	chr9	-	3667	10	FSM	ENSMUSG00000058587.10	ENSMUST00000072232.9	3667	10	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_2	36.4461381720248	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTAGCTGTATGCCACATTA	NA	False	NA	71	True	AATAAA	-30	NA	75466939	75404988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_75407433_75412121_75412267_75414662_75414807_75416595_75416704_75418407_75418539_75422448_75422539_75423754_75423878_75436650_75436808_75439707_75439875_75466781
transcript_59269.known	chr9	-	898	4	FSM	ENSMUSG00000058587.10	ENSMUST00000215821.2	898	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	245.142588892442	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTGGATTAATTTTGGTA	NA	False	NA	NA	False	NA	NA	NA	75466876	75428181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_75428661_75436650_75436808_75439707_75439875_75466781
transcript_59270.known	chr9	-	9871	10	FSM	ENSMUSG00000032186.16	ENSMUST00000098552.10	9871	10	0	0	0	0	multi-exon	TRUE	canonical	3	14	junction_9	3.42467444609388	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTGGTTCCTGGCTACTC	NA	False	NA	2	True	AATAAA	-19	NA	75518585	75472902	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_75481406_75483927_75484073_75484390_75484535_75489111_75489220_75493329_75493461_75495171_75495259_75499844_75499968_75502202_75502360_75504491_75504685_75518305
transcript_59275.known	chr9	-	1564	7	FSM	ENSMUSG00000032186.16	ENSMUST00000215462.2	1564	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_6	3.4960294939005	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTCCTTTTATGCATT	NA	False	NA	NA	False	AATAAA	-14	NA	75518403	75488444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_75489220_75493329_75493461_75495171_75495259_75499844_75499968_75502202_75502360_75504491_75504685_75518305
transcript_59276.known	chr9	-	2384	12	FSM	ENSMUSG00000032181.8	ENSMUST00000034699.8	2384	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	2.00412797136805	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GCAAAATGCTTGCATAATAC	7794	False	NA	NA	False	TATAAA	-35	NA	75591338	75550470	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_75551227_75558912_75558994_75568534_75568673_75570474_75570559_75572935_75573053_75576496_75576675_75582626_75582777_75583950_75584094_75589245_75589462_75589555_75589602_75590219_75590273_75590916
transcript_59277.known	chr9	-	2152	12	FSM	ENSMUSG00000032181.8	ENSMUST00000213324.2	2152	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1.99171839092788	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTGAGAAACAGCTGCTT	7835	False	NA	-8	True	AATAAA	-25	NA	75591297	75550646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_75551227_75558912_75558994_75568534_75568673_75570489_75570559_75572935_75573053_75576496_75576675_75582626_75582777_75583950_75584094_75589245_75589462_75589555_75589602_75590219_75590273_75590916
transcript_59279.nnic	chr9	+	641	3	NNC	ENSMUSG00000098894.2	novel	581	2	NA	NA	-7127	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_1	3	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGCAGACTTGACAGTGA	NA	False	NA	NA	False	AATAAA	-22	NA	76219731	76228128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_76219851_76226917_76227020_76227708
transcript_59284.known	chr9	+	2782	8	FSM	ENSMUSG00000032349.14	ENSMUST00000034904.14	2782	8	0	0	0	0	multi-exon	FALSE	canonical	3	515	junction_6	44.3764048354804	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTGTCTTCTGTTGTTTG	NA	False	NA	11	True	ATTAAA	-19	NA	77824645	77891801	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_77824809_77864422_77864489_77868147_77868336_77883066_77883145_77884029_77884202_77887106_77887232_77888755_77888891_77889946
transcript_59285.known	chr9	-	2155	13	FSM	ENSMUSG00000001366.15	ENSMUST00000085311.13	2155	13	0	0	0	0	multi-exon	FALSE	non_canonical	2	34	junction_11	11.6437274482396	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTGGATGGCCTTTAA	NA	False	NA	3	True	AATAAA	-31	NA	78015938	77988780	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78015572
transcript_59286.known	chr9	-	1850	13	FSM	ENSMUSG00000001366.15	ENSMUST00000001402.14	1850	13	0	0	0	0	multi-exon	FALSE	non_canonical	2	18	junction_12	15.7920514464996	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATGTGTGGATGGCCTT	NA	False	NA	0	True	AATAAA	-28	NA	78016347	77988783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_78002426_78002542_78003149_78003281_78005627_78005728_78007069_78007128_78008809_78008969_78011552_78011637_78016283
transcript_59287.nnic	chr9	-	1260	7	NNC	ENSMUSG00000001366.15	novel	2155	13	NA	NA	-3155	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_6	19.2563120964414	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGTGTGGATGGCCTTTAA	NA	False	NA	3	True	AATAAA	-31	NA	77998073	77988780	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_77989371_77991784_77991937_77993188_77993283_77993556_77993653_77994455_77994547_77994751_77994871_77997955
transcript_59288.known	chr9	+	2540	14	FSM	ENSMUSG00000009828.16	ENSMUST00000118869.8	2540	14	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	29.6118879054586	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACCGGGTCTCATTATTT	NA	False	NA	3	True	TATAAA	-14	NA	78016473	78075220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_78016764_78038576_78038854_78042877_78042933_78047257_78047380_78048475_78048556_78057810_78057944_78060846_78061019_78062630_78062799_78064922_78065235_78067650_78067842_78067944_78068094_78071812_78071942_78074191_78074315_78074881
transcript_59289.known	chr9	+	6560	14	FSM	ENSMUSG00000009828.16	ENSMUST00000044551.8	6560	14	0	0	0	0	multi-exon	FALSE	canonical	2	83	junction_12	10.9192842819834	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACATTGACTAGAATTTTT	NA	False	NA	NA	False	AATAAA	-13	NA	78020596	78079389	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_78020738_78038576_78038854_78042877_78042933_78047257_78047380_78048475_78048556_78057810_78057944_78060846_78061019_78062630_78062799_78064922_78065235_78067650_78067842_78067944_78068094_78071812_78071942_78074191_78074315_78074881
transcript_59290.known	chr9	+	1444	4	FSM	ENSMUSG00000097574.3	ENSMUST00000180974.2	1444	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAGCCTTGGGATTTCTTTT	NA	False	NA	3	True	AATAAA	-14	NA	78083195	78086161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_78083318_78083852_78084025_78084280_78084376_78085106
transcript_59293.known	chr9	+	977	7	FSM	ENSMUSG00000032348.7	ENSMUST00000034903.7	977	7	0	0	0	0	multi-exon	FALSE	canonical	3	2717	junction_1	326.320735201155	3759	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCGTTGGAGAGGTGTTT	NA	False	NA	17	True	ATTAAA	-16	NA	78099228	78116631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_78099347_78105551_78105659_78106771_78106824_78111513_78111647_78113193_78113336_78115082_78115215_78116338
transcript_59294.known	chr9	+	993	8	FSM	ENSMUSG00000074179.12	ENSMUST00000119823.8	993	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	10.1398385850374	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTCATAAGTTCTA	5190	False	NA	NA	False	AATAAA	-17	NA	78197204	78212807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_78197285_78201283_78201398_78202065_78202175_78205380_78205433_78206218_78206352_78209967_78210110_78211653_78211786_78212576
transcript_59295.nic	chr9	-	992	7	NIC	ENSMUSG00000057933.11	novel	870	7	NA	NA	-3926	0	combination_of_known_junctions	FALSE	canonical	3	13	junction_6	12.0369800568452	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTCATAAGTTCTA	NA	False	NA	1	True	AATAAA	-17	NA	78249960	78238299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_78238532_78239368_78239501_78241042_78241185_78244840_78244974_78245926_78245979_78249111_78249221_78249768
transcript_59296.known	chr9	-	870	7	FSM	ENSMUSG00000057933.11	ENSMUST00000034902.12	870	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_6	11.4260910006684	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGCTCCTCATAAGTTCTA	NA	False	NA	1	True	AATAAA	-17	NA	78254440	78238299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_78238532_78239368_78239501_78241042_78241185_78244840_78244974_78245926_78245979_78249111_78249221_78254370
transcript_593.known	chr1	+	462	3	FSM	ENSMUSG00000050122.20	ENSMUST00000195450.2	462	3	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	16	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCAGATTTCTCCCTCA	NA	False	NA	5	True	AATAAA	-22	NA	37174588	37180417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_37174647_37176810_37176969_37180171
transcript_5930.known	chr10	-	2289	12	FSM	ENSMUSG00000025403.6	ENSMUST00000026470.6	2289	12	0	0	0	0	multi-exon	FALSE	canonical	3	1501	junction_11	177.272820512796	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTGTATTTTGCCCACGG	NA	False	NA	-21	True	NA	NA	NA	127358313	127353007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_127353786_127353893_127354002_127354093_127354250_127354339_127354440_127354660_127354827_127354989_127355130_127355257_127355381_127355498_127355581_127355839_127356041_127356206_127356287_127356786_127356985_127358156
transcript_59328.known	chr9	-	619	3	FSM	ENSMUSG00000060461.6	ENSMUST00000071991.6	619	3	0	0	0	0	multi-exon	FALSE	canonical	3	178157	junction_1	1580.5	87276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGCGTCGTCATTAAAATA	NA	False	NA	NA	False	AATAAA	-24	NA	78275459	78274333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_78274577_78275002_78275186_78275266
transcript_59331.known	chr9	-	2138	3	FSM	ENSMUSG00000032346.8	ENSMUST00000034900.8	2138	3	0	0	0	0	multi-exon	FALSE	canonical	3	1945	junction_2	79.5	2250	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTCAGATAAAGCTTTGCT	NA	False	NA	NA	False	NA	NA	NA	78286007	78283390	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_78284974_78285256_78285440_78285635
transcript_59334.known	chr9	+	2366	12	FSM	ENSMUSG00000032342.14	ENSMUST00000034896.13	2366	12	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_9	10.2457409010559	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTAGGTGATTTTACG	NA	False	NA	19	True	AATAAA	-18	NA	78355489	78381434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_78355793_78356700_78356901_78356999_78357118_78360045_78360336_78364491_78364605_78364697_78364889_78365198_78365330_78368114_78368320_78368801_78368974_78372165_78372285_78377912_78378074_78381071
transcript_59336.known	chr9	+	2076	11	FSM	ENSMUSG00000032342.14	ENSMUST00000148238.2	2076	11	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	25.1477633200251	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGTTAGGTGATTTTACG	NA	False	NA	19	True	AATAAA	-18	NA	78355489	78381434	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_78355793_78356700_78356901_78356999_78357118_78364491_78364605_78364697_78364889_78365198_78365330_78368114_78368320_78368801_78368974_78372165_78372285_78377912_78378074_78381071
transcript_59348.known	chr9	-	1794	8	FSM	ENSMUSG00000037742.15	ENSMUST00000042235.15	1794	8	0	0	0	0	multi-exon	FALSE	canonical	3	9075	junction_7	2138.51814038008	47414	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGGTCAATGCTGAAAGT	7100	False	NA	NA	False	ATTAAA	-22	NA	78389006	78385730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_78386141_78386239_78386475_78386559_78386817_78386905_78387057_78387133_78387431_78387522_78387703_78387792_78387971_78388920
transcript_59349.known	chr9	-	3236	11	FSM	ENSMUSG00000049624.15	ENSMUST00000052441.12	3236	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	5.61782876207526	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTATGTGTATGGTGTTT	NA	False	NA	-1	True	ATTAAA	-19	NA	78495323	78443769	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_78445582_78448180_78448272_78460215_78460364_78464738_78464872_78466292_78466452_78467969_78468089_78478303_78478391_78481931_78482020_78484311_78484546_78485792_78485990_78495155
transcript_59353.known	chr9	-	659	4	FSM	ENSMUSG00000032330.8	ENSMUST00000034881.8	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	5621	junction_3	439.918426781855	3943	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGTCAGCAGTTGGCA	NA	False	NA	0	True	AATAAA	-16	NA	79667160	79662642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_79662888_79663558_79663644_79665771_79665862_79666921
transcript_59357.known	chr9	-	3658	7	FSM	ENSMUSG00000032328.13	ENSMUST00000034878.12	3658	7	0	0	0	0	multi-exon	FALSE	canonical	3	408	junction_2	27.5282682992511	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATCGTGCTGTTTATGTGTC	NA	False	NA	-9	True	AATAAA	-14	NA	79700712	79676224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_79678762_79681374_79681585_79682383_79682534_79683434_79683523_79684505_79684614_79687822_79687931_79700255
transcript_59361.known	chr9	+	638	2	FSM	ENSMUSG00000079225.4	ENSMUST00000055820.7	638	2	0	0	0	0	multi-exon	FALSE	canonical	3	2455	junction_1	0	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAGAAACT	NA	False	NA	NA	False	NA	NA	NA	81559650	81560730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_81559913_81560354
transcript_59362.nnic	chr9	+	861	2	NNC	ENSMUSG00000079225.4	novel	638	2	NA	NA	-60	14	at_least_one_novel_splicesite	FALSE	canonical	3	2674	junction_1	0	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAACTTCAAGGACTGAGTC	NA	False	NA	NA	False	NA	NA	NA	81559590	81560744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_81560062_81560354
transcript_59366.known	chr9	+	2670	5	FSM	ENSMUSG00000043289.13	ENSMUST00000057067.10	2670	5	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_2	8.4372685153431	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACAAAAATAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	81745722	81909079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_81745971_81772174_81772421_81809150_81809687_81861178_81861311_81907571
transcript_59368.known	chr9	+	2158	4	FSM	ENSMUSG00000032251.13	ENSMUST00000113245.9	2158	4	0	0	0	0	multi-exon	TRUE	canonical	3	114	junction_3	13.589211407093	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAGCGATGTTGATCTCTG	NA	False	NA	4	True	NA	NA	NA	82711592	82729740	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_82712393_82719470_82719537_82728351_82728483_82728579
transcript_59369.known	chr9	-	10756	40	FSM	ENSMUSG00000032253.14	ENSMUST00000034787.12	10756	40	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_28	10.5485322148115	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGTGTCTACTTAGAACAG	NA	False	NA	NA	False	AATAAA	-17	NA	82857569	82748211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_82753915_82757342_82757541_82758061_82758322_82758778_82758943_82759242_82759396_82762164_82762315_82763373_82763425_82763722_82763793_82766885_82767012_82768674_82768796_82769566_82769723_82772166_82772229_82772413_82772526_82775375_82775459_82775577_82775703_82776286_82776395_82778074_82778195_82782674_82782907_82785176_82785254_82787701_82787843_82788993_82789112_82790743_82790928_82791839_82791978_82795740_82795967_82797348_82797478_82808449_82808585_82809087_82809242_82810152_82810252_82810881_82810923_82811027_82811129_82812356_82812428_82814538_82814640_82814898_82815121_82827810_82827972_82841564_82841664_82841753_82841905_82856726_82856787_82856979_82857010_82857140_82857200_82857304
transcript_59371.known	chr9	-	983	6	FSM	ENSMUSG00000066456.15	ENSMUST00000162246.9	983	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	12.1556571192182	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATCCACCTGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	83028738	82992000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_82992483_82993045_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
transcript_59372.known	chr9	-	862	6	FSM	ENSMUSG00000066456.15	ENSMUST00000161796.9	862	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	6.24179461373089	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATCCACCTGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	83028658	82992000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_82992483_82993086_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
transcript_59373.known	chr9	-	1391	5	FSM	ENSMUSG00000066456.15	ENSMUST00000185315.7	1391	5	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	4.7169905660283	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATATCCACCTGTTTGTG	NA	False	NA	-6	True	AATAAA	-18	NA	83028583	82992000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_82993160_82994272_82994324_82996825_82996856_83002425_83002477_83028483
transcript_59374.known	chr9	+	467	1	FSM	ENSMUSG00000058838.10	ENSMUST00000078766.10	467	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	288	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGTTGTGTATGCGTTAAT	NA	False	NA	NA	False	NA	NA	NA	83291712	83292179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_83291700_83292200
transcript_59375.known	chr9	-	1728	3	FSM	ENSMUSG00000032258.16	ENSMUST00000190373.2	1728	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	9	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAAATCCCTT	NA	False	NA	NA	False	AGTAAA	-12	NA	83323146	83304299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_83305606_83308645_83309015_83323093
transcript_59376.known	chr9	+	4565	4	FSM	ENSMUSG00000032261.17	ENSMUST00000113215.10	4565	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_2	12.4988888395018	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGTTTTATTTTTCCTTC	NA	False	NA	9	True	AATAAA	-16	NA	83430380	83483399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_83430557_83459488_83459675_83476710_83476792_83479277
transcript_59377.nnic	chr9	+	2968	23	NNC	ENSMUSG00000038379.16	novel	2871	22	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	74.5741768391691	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTACAGTGGTCAGTTTCT	NA	False	NA	10	True	AATAAA	-21	NA	83716751	83754439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83726402_83726481_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235_83751334_83754037
transcript_59379.known	chr9	+	2871	22	FSM	ENSMUSG00000038379.16	ENSMUST00000070326.14	2871	22	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_10	27.5493373131652	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTACAGTGGTCAGTTTCT	NA	False	NA	10	True	AATAAA	-21	NA	83716770	83754439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235_83751334_83754037
transcript_59382.known	chr9	+	2711	21	FSM	ENSMUSG00000038379.16	ENSMUST00000188445.7	2711	21	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_10	27.9819584732735	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAAATGTCTCGACAACATT	NA	False	NA	0	True	AATAAA	-15	NA	83716741	83751546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_83716813_83717823_83717978_83721252_83721467_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235
transcript_59383.nnic	chr9	+	2525	20	NIC	ENSMUSG00000038379.16	novel	2871	22	NA	NA	6	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_1	61.9110254256225	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTACAGTGGTCAGTTTCT	NA	False	NA	10	True	AATAAA	-21	NA	83716748	83754439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_83716813_83721778_83721886_83725133_83725278_83725680_83725796_83725936_83726010_83726099_83726195_83727965_83728051_83729187_83729306_83732624_83732762_83735139_83735229_83736855_83736983_83739370_83739464_83744214_83744373_83744500_83744653_83745497_83745623_83747130_83747212_83750095_83750273_83750628_83750714_83751235_83751334_83754037
transcript_59385.known	chr9	+	1791	2	FSM	ENSMUSG00000038379.16	ENSMUST00000189727.2	1791	2	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATTTAATGATGAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	83716786	83719588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_83716813_83717823
transcript_59386.known	chr9	+	1472	11	FSM	ENSMUSG00000032263.15	ENSMUST00000034801.11	1472	11	0	0	0	0	multi-exon	FALSE	canonical	3	595	junction_3	45.3898667105335	89	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTGTGTGTGTGTCCTCT	NA	False	NA	NA	False	AATAAA	-19	NA	83807202	84006292	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_83807413_83834576_83834655_83835765_83835835_83870828_83870963_83871193_83871350_83873766_83873876_83892306_83892405_83894561_83894673_83951157_83951245_84004286_84004436_84006021
transcript_59388.known	chr9	+	540	4	FSM	ENSMUSG00000032263.15	ENSMUST00000188200.7	540	4	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	313.434026373795	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGACTGTGTGTGTGTCCTCT	2751	False	NA	NA	False	AATAAA	-19	NA	83927939	84006292	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_83927973_83951157_83951245_84004286_84004436_84006021
transcript_59389.known	chr9	+	798	1	FSM	ENSMUSG00000099927.2	ENSMUST00000190511.2	798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1979	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTACACTGAATTTTC	NA	False	NA	NA	False	AAAAAG	-33	NA	84306036	84306834	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_84306000_84306800
transcript_59391.known	chr9	-	5650	29	FSM	ENSMUSG00000035941.16	ENSMUST00000039213.15	5650	29	0	0	0	0	multi-exon	FALSE	canonical	3	145	junction_19	26.8952047922362	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTCTAGCGTGTGTTTG	NA	False	NA	-7	True	AATAAA	-16	NA	85631387	85569412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_85570568_85572261_85572395_85572746_85572819_85579171_85579319_85585067_85585212_85585703_85585797_85588496_85588658_85590076_85590226_85592428_85592542_85595649_85595772_85596240_85596302_85597351_85597470_85599603_85599706_85600413_85600511_85600947_85600986_85601065_85601149_85601915_85602003_85602796_85603400_85604327_85604506_85606099_85606278_85608662_85608787_85610458_85610640_85610728_85610847_85613136_85613308_85614683_85614795_85617027_85617153_85619520_85619618_85625427_85626113_85631183
transcript_59392.known	chr9	-	760	1	FSM	ENSMUSG00000099980.2	ENSMUST00000071172.7	760	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	6	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTAAATGAATACTCCTAAG	NA	False	NA	NA	False	AAAAAG	-31	NA	85664680	85663920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_85663900_85664700
transcript_59394.known	chr9	-	1790	10	FSM	ENSMUSG00000032415.15	ENSMUST00000034986.14	1790	10	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_5	4.12160822022031	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTCTTTTGTTCTTTAT	NA	False	NA	0	True	ATTAAA	-26	NA	86347003	86189358	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_86189930_86254393_86254533_86304893_86305058_86307314_86307424_86309420_86309491_86317336_86317407_86322638_86322808_86330815_86330907_86333866_86334064_86346793
transcript_59399.known	chr9	-	2666	13	FSM	ENSMUSG00000056131.14	ENSMUST00000070064.11	2666	13	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_7	43.7311070317483	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGTGTGTTTTAAGT	NA	False	NA	NA	False	AAAAAG	-12	NA	86453880	86436429	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_86437457_86438244_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
transcript_594.known	chr1	-	3863	3	FSM	ENSMUSG00000026112.8	ENSMUST00000027286.7	3863	3	0	0	0	0	multi-exon	FALSE	canonical	3	395	junction_2	27.5	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTCTGTTTCAAGATTA	6272	False	NA	-3	True	NA	NA	NA	37469184	37456164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_37459709_37467422_37467507_37468949
transcript_59401.known	chr9	-	2116	12	FSM	ENSMUSG00000056131.14	ENSMUST00000186193.7	2116	12	0	0	0	0	multi-exon	FALSE	canonical	3	372	junction_6	45.4649079097238	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATGGCAATGACTATGTG	NA	False	NA	NA	False	GATAAA	-12	NA	86453846	86437733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_86438419_86439555_86439679_86440447_86440562_86441467_86441567_86443873_86443958_86444588_86444747_86446729_86446926_86447650_86447785_86449561_86449630_86451263_86451449_86452254_86452461_86453782
transcript_59403.known	chr9	+	1130	3	FSM	ENSMUSG00000032417.11	ENSMUST00000179212.3	1130	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	25.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAGTCACACTTGATTACC	NA	False	NA	-53	True	NA	NA	NA	86454105	86456893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_86454142_86454889_86455117_86456026
transcript_59404.known	chr9	+	1054	3	FSM	ENSMUSG00000032417.11	ENSMUST00000185566.7	1054	3	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	7	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATTCTGGGTGAAAAACC	NA	False	NA	NA	False	AATAAA	-18	NA	86454043	86456786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_86454111_86454889_86455117_86456026
transcript_59405.known	chr9	-	3288	14	FSM	ENSMUSG00000032418.16	ENSMUST00000034989.15	3288	14	0	0	0	0	multi-exon	TRUE	canonical	3	250	junction_5	30.9913139195733	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCGTAAATGTCATTTTTT	9610	False	NA	NA	False	ATTAAA	-20	NA	86578006	86463423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_86464961_86469015_86469115_86476496_86476671_86478108_86478252_86480771_86480878_86493905_86494020_86495593_86495692_86501777_86501888_86528363_86528468_86532920_86533083_86536695_86536772_86559916_86560067_86561871_86562006_86577725
transcript_59408.nnic	chr9	-	1762	3	NNC	ENSMUSG00000032418.16	novel	3288	14	NA	NA	31085	0	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_2	172.5	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCGTAAATGTCATTTTTT	NA	False	NA	NA	False	ATTAAA	-20	NA	86469672	86463423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_86464961_86469015_86469115_86469546
transcript_59409.known	chr9	+	3444	2	FSM	ENSMUSG00000033491.14	ENSMUST00000036426.13	3444	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTTACTGTGTTTGTATA	NA	False	NA	4	True	AATAAA	-19	NA	86625701	86640496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_86625860_86637210
transcript_59412.nnic	chr9	-	1981	7	NIC	ENSMUSG00000033419.17	novel	4336	30	NA	NA	-8	4	combination_of_known_splicesites	FALSE	canonical	3	5	junction_6	8.01387685344754	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCAAACGTAATCTTTCTGT	NA	False	NA	NA	False	AATAAA	-19	NA	86680934	86647981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_86649390_86655571_86655677_86657644_86657745_86659086_86659118_86663622_86663773_86665352_86665488_86680882
transcript_59415.known	chr9	+	2644	16	FSM	ENSMUSG00000032872.17	ENSMUST00000168529.9	2644	16	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_12	173.734612428139	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGGGACTAGGTGTGTTT	NA	False	NA	NA	False	AATAAA	-27	NA	86904066	86959827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948701_86948867_86958880
transcript_5943.known	chr10	+	934	4	FSM	ENSMUSG00000040280.11	ENSMUST00000035735.11	934	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	3.29983164553722	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGCTGCGCCTGCTAATCA	NA	False	NA	NA	False	AATACA	-21	NA	127350835	127353023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127350908_127351267_127351357_127352133_127352195_127352311
transcript_59434.known	chr9	+	2733	16	FSM	ENSMUSG00000032872.17	ENSMUST00000174724.8	2733	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_15	223.065750147549	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAAAGAACTCTGGAGTTAA	NA	False	NA	NA	False	AATAAA	-20	NA	86904139	86950301	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_86904307_86908999_86909154_86911556_86911658_86914432_86914515_86920778_86920809_86922434_86922520_86923305_86923364_86924832_86924927_86929526_86929560_86931154_86931278_86937817_86937959_86939194_86939348_86940977_86941129_86941417_86941505_86948701_86948867_86949192
transcript_59435.known	chr9	-	7685	27	FSM	ENSMUSG00000056919.10	ENSMUST00000093802.6	7685	27	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_14	9.30228705097291	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTAGGAGTTTTGTGTTTAT	NA	False	NA	NA	False	AATACA	-18	NA	87137589	87071629	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_87074976_87075625_87075761_87082033_87082133_87083750_87083893_87085693_87086338_87088895_87089109_87092849_87092955_87093709_87093874_87094904_87095032_87099120_87099227_87100557_87100671_87102503_87102645_87103150_87103379_87104096_87104228_87107731_87107994_87109206_87109481_87113430_87113513_87114031_87114224_87119885_87120003_87120406_87120438_87121867_87121987_87126330_87126399_87128201_87128386_87128668_87128816_87130427_87130552_87135984_87136102_87137315
transcript_59436.known	chr9	-	3082	29	FSM	ENSMUSG00000032422.19	ENSMUST00000174806.9	3082	29	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_14	53.7773542165344	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGTTTAGGTATTACGGCC	NA	False	NA	-19	True	AATAAA	-23	NA	88320967	88258819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88282775_88282803_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
transcript_59437.known	chr9	-	3109	28	FSM	ENSMUSG00000032422.19	ENSMUST00000165315.9	3109	28	0	0	0	0	multi-exon	TRUE	canonical	3	141	junction_13	28.9754164757839	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTTTGTATTTACTGTCT	NA	False	NA	-2	True	AATAAA	-40	NA	88321004	88258802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88258993_88261562_88261620_88262222_88262315_88263534_88263631_88263772_88263938_88264130_88264255_88265811_88265932_88266022_88266064_88267772_88267885_88269263_88269365_88273814_88273899_88276419_88276622_88280291_88280425_88283972_88284032_88284196_88284322_88285317_88285474_88286356_88286472_88286563_88286645_88286751_88286797_88287292_88287369_88289378_88289536_88292610_88292696_88295533_88295622_88297724_88297769_88302303_88302383_88302801_88302879_88304950_88305072_88320720
transcript_59441.known	chr9	-	6257	11	FSM	ENSMUSG00000032423.13	ENSMUST00000174391.8	6257	11	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_10	258.93213396564	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTCCAGGAGTCCAAGAATT	NA	False	NA	-16	True	AATAAA	-28	NA	88364301	88331783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88364108
transcript_59445.known	chr9	+	481	1	FSM	ENSMUSG00000066443.6	ENSMUST00000155008.2	481	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3567	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AATGTACACAAAGAAATAAA	NA	False	NA	NA	False	NA	NA	NA	88272889	88273370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_88272900_88273400
transcript_59446.known	chr9	-	3404	12	FSM	ENSMUSG00000032423.13	ENSMUST00000174282.8	3404	12	0	0	0	0	multi-exon	FALSE	canonical	3	172	junction_1	221.053263840518	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGGAGGCGAGTGTAACTT	NA	False	NA	-15	True	AATAAA	-18	NA	88364249	88334741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88336346_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359126_88359241_88361623_88361732_88361846_88361966_88362658_88362819_88364108
transcript_59447.known	chr9	-	1925	11	FSM	ENSMUSG00000032423.13	ENSMUST00000172828.8	1925	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	353.000906514417	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTCTAAGTAGATTTTTCC	NA	False	NA	-1	True	AATAAA	-28	NA	88364202	88335990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88336349_88338415_88338783_88343722_88343845_88344288_88344439_88345007_88345214_88346700_88346837_88358841_88359019_88359152_88359241_88361623_88361732_88361846_88361966_88364108
transcript_59449.known	chr9	-	826	6	FSM	ENSMUSG00000097195.11	ENSMUST00000182232.9	826	6	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	292.278634183205	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88405027	88403102	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404640_88404903
transcript_59451.known	chr9	-	809	6	FSM	ENSMUSG00000097195.11	ENSMUST00000239365.2	809	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_5	430.698688180032	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404970	88403104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536_88404682_88404903
transcript_59452.known	chr9	-	1678	5	FSM	ENSMUSG00000097195.11	ENSMUST00000239369.2	1678	5	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	300.420122495148	265	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTATTCAATTCTTTTTGTG	NA	False	NA	-7	True	AATAAA	-40	NA	88405615	88403102	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359_88404435_88404536
transcript_59455.known	chr9	-	1012	5	FSM	ENSMUSG00000097195.11	ENSMUST00000239192.2	1012	5	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	476.290090176145	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTCAATTGCAAATATTTA	NA	False	NA	-23	True	AATAAA	-24	NA	88404986	88403118	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88403770_88403970_88404029_88404359_88404435_88404536_88404682_88404903
transcript_59457.nic	chr9	-	673	5	NIC	ENSMUSG00000097195.11	novel	826	6	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	461	junction_1	309.579553588411	259	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404946	88403107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536_88404640_88404903
transcript_5946.known	chr10	+	3775	22	FSM	ENSMUSG00000002147.19	ENSMUST00000092074.12	3775	22	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_1	71.0521510108266	175	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAATAATCTACTGTACACA	2271	False	NA	-6	True	AATAAA	-22	NA	127478854	127496826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127479119_127482759_127482897_127483553_127483693_127483974_127484059_127486564_127486704_127486821_127486875_127487025_127487175_127487818_127487951_127488059_127488249_127488853_127488942_127489075_127489199_127490794_127490888_127491165_127491373_127492792_127492888_127492976_127493114_127493424_127493572_127494065_127494130_127494225_127494331_127494497_127494570_127495301_127495368_127495457_127495587_127495663
transcript_59460.known	chr9	-	1408	4	FSM	ENSMUSG00000097195.11	ENSMUST00000190033.4	1408	4	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	320.936476926856	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88405016	88403104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88403502_88403702_88403770_88403970_88404435_88404536
transcript_59462.known	chr9	-	1519	4	FSM	ENSMUSG00000097195.11	ENSMUST00000239203.2	1519	4	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_1	345.790238278771	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACTCTAGACCATGCTGGCC	NA	False	NA	NA	False	NA	NA	NA	88405010	88402857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88403770_88403970_88404029_88404359_88404435_88404536
transcript_59463.nic	chr9	-	970	4	NIC	ENSMUSG00000097195.11	novel	1678	5	NA	NA	7	0	intron_retention	FALSE	canonical	3	461	junction_1	319.66545011934	206	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404979	88403107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_88403502_88403970_88404029_88404359_88404435_88404536
transcript_59465.known	chr9	-	1534	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239278.2	1534	3	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	178	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88403502_88403702_88404435_88404536
transcript_59467.known	chr9	-	1533	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239284.2	1533	3	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_1	392.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404943	88403107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88403770_88403970_88404435_88404536
transcript_59468.nic	chr9	-	1301	3	NIC	ENSMUSG00000097195.11	novel	1533	3	NA	NA	7	0	intron_retention	FALSE	canonical	3	461	junction_1	364.5	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATATTTATTCAATTCTTT	NA	False	NA	-12	True	AATAAA	-35	NA	88404979	88403107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_88403502_88403970_88404435_88404536
transcript_59470.known	chr9	-	1781	2	FSM	ENSMUSG00000097195.11	ENSMUST00000239253.2	1781	2	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAAATATTTATTCAATTCT	NA	False	NA	-14	True	AATAAA	-33	NA	88404992	88403109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88404435_88404536
transcript_59471.known	chr9	-	1636	2	FSM	ENSMUSG00000097195.11	ENSMUST00000239219.2	1636	2	0	0	0	0	multi-exon	FALSE	canonical	3	834	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88403502_88403702
transcript_59472.known	chr9	-	1437	3	FSM	ENSMUSG00000097195.11	ENSMUST00000239344.2	1437	3	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	214.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404943	88403104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88403502_88403702_88403770_88403970
transcript_59473.known	chr9	-	1104	4	FSM	ENSMUSG00000097195.11	ENSMUST00000239184.2	1104	4	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_2	276.362483384091	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATTCAATTCTTTTTG	NA	False	NA	-9	True	AATAAA	-38	NA	88404941	88403104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404359
transcript_59474.known	chr9	-	913	4	FSM	ENSMUSG00000097195.11	ENSMUST00000239377.2	913	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_3	338.103534438787	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTCAATTGCAAATATTTA	NA	False	NA	-23	True	AATAAA	-24	NA	88404941	88403118	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88403502_88403702_88403770_88403970_88404029_88404536
transcript_59475.known	chr9	-	1623	2	FSM	ENSMUSG00000097195.11	ENSMUST00000239379.2	1623	2	0	0	0	0	multi-exon	FALSE	canonical	3	405	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTCAATTGCAAATATTTA	NA	False	NA	-23	True	AATAAA	-24	NA	88404942	88403118	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88403770_88403970
transcript_5948.known	chr10	+	6002	9	FSM	ENSMUSG00000040195.12	ENSMUST00000048099.5	6002	9	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_7	22.4499443206436	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAGTAGTCTTTTTAAATTAA	NA	False	NA	16	True	AATAAA	-16	NA	127512934	127536918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127513097_127524101_127524218_127525093_127525314_127526729_127526803_127528836_127528931_127529352_127529468_127530297_127530524_127531237_127531412_127532096
transcript_59481.known	chr9	+	3472	6	FSM	ENSMUSG00000032425.16	ENSMUST00000162827.8	3472	6	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	5.88557558782486	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCAGTTTGAGTAGTGTT	NA	False	NA	NA	False	NA	NA	NA	88430072	88453114	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_88430562_88434768_88434915_88436428_88436598_88449211_88449339_88449560_88449654_88450666
transcript_59491.known	chr9	-	725	4	FSM	ENSMUSG00000079427.11	ENSMUST00000186863.7	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_3	219.136182924378	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTCTTGTCAAAATGAATCA	NA	False	NA	NA	False	NA	NA	NA	88601640	88570744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88571039_88597540_88597803_88598546_88598617_88601541
transcript_59492.nnic	chr9	-	852	4	NIC	ENSMUSG00000079427.11	novel	725	4	NA	NA	15	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_3	226.851395313222	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAGAAATCAATAGAAAT	NA	False	NA	NA	False	AATAAA	-16	NA	88601851	88570658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_88571039_88597540_88597803_88598546_88598617_88601711
transcript_59494.nnic	chr9	-	809	3	NIC	ENSMUSG00000079427.11	novel	725	4	NA	NA	-68	0	combination_of_known_splicesites	FALSE	canonical	3	156	junction_2	185.5	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATTTAGAAATCAATAGAAAT	NA	False	NA	NA	False	AATAAA	-16	NA	88601708	88570658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_88571039_88597540_88597803_88601541
transcript_59495.known	chr9	-	801	3	FSM	ENSMUSG00000079427.11	ENSMUST00000113110.5	801	3	0	0	0	0	multi-exon	TRUE	canonical	3	319	junction_2	104	147	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAATCAATAGAAATTATT	NA	False	NA	NA	False	AATAAA	-20	NA	88601866	88570654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88571039_88597540_88597803_88601711
transcript_59498.known	chr9	-	602	5	FSM	ENSMUSG00000097177.9	ENSMUST00000181448.3	602	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	50.4746223363781	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATTGGTTATGAGCCATT	NA	False	NA	NA	False	TATAAA	-28	NA	88740923	88739284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88739637_88739866_88739925_88740278_88740354_88740442_88740498_88740861
transcript_59501.known	chr9	-	1044	5	FSM	ENSMUSG00000097177.9	ENSMUST00000180783.8	1044	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	55.97097462078	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAGAAAAAATGGGG	NA	False	NA	NA	False	NA	NA	NA	88740854	88725562	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_88726320_88739866_88739925_88740278_88740354_88740442_88740498_88740755
transcript_59504.nnic	chr9	+	1487	5	NIC	ENSMUSG00000066442.18	novel	1406	4	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_2	164.63975826027	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGTATAAAAATAAAATAAT	NA	False	NA	NA	False	ATTAAA	-22	NA	89093452	89122244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_89093535_89094586_89095310_89096464_89096535_89097261_89097524_89121894
transcript_59506.known	chr9	+	705	4	FSM	ENSMUSG00000066442.18	ENSMUST00000117314.8	705	4	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	167.420296127905	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAACATATGTATATTTT	NA	False	NA	NA	False	NA	NA	NA	89093435	89122168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_89093535_89096464_89096535_89097261_89097524_89121894
transcript_59509.known	chr9	+	816	3	FSM	ENSMUSG00000066442.18	ENSMUST00000085256.8	816	3	0	0	0	0	multi-exon	TRUE	canonical	3	175	junction_1	109	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTATTAGAATATTAATGCAA	NA	False	NA	NA	False	AATAAA	-35	NA	89093209	89122293	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_89093365_89097261_89097524_89121894
transcript_5951.known	chr10	-	2582	7	FSM	ENSMUSG00000025402.13	ENSMUST00000026469.9	2582	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_1	9.00771274458111	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCATGGCCCCCTTCCCCTC	NA	False	NA	-1	True	AATAAA	-21	NA	127502579	127496786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_127497649_127498599_127498792_127499000_127499134_127499218_127499271_127499608_127499743_127500133_127501008_127502244
transcript_59512.nic	chr9	+	805	3	NIC	ENSMUSG00000066442.18	novel	1406	4	NA	NA	-94	0	combination_of_known_junctions	FALSE	canonical	3	83	junction_1	155	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGTATAAAAATAAAATAAT	NA	False	NA	NA	False	ATTAAA	-22	NA	89093341	89122244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_89093535_89097261_89097524_89121894
transcript_59514.known	chr9	+	481	2	FSM	ENSMUSG00000066442.18	ENSMUST00000144930.2	481	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAATCAATAGAAATTATTA	NA	False	NA	NA	False	AATAAA	-21	NA	89093438	89122279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_89093535_89121894
transcript_59517.known	chr9	-	1346	3	FSM	ENSMUSG00000032353.10	ENSMUST00000058488.9	1346	3	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	7.5	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCTGGAGTGATGTGTGC	NA	False	NA	-12	True	AATAAA	-14	NA	89587121	89581258	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_89582033_89584824_89585074_89586798
transcript_59518.known	chr9	+	1617	12	FSM	ENSMUSG00000032359.15	ENSMUST00000034915.15	1617	12	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	3.46648653907957	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGCGTAGGTCTCTAAC	NA	False	NA	6	True	AATAAA	-18	NA	89936319	89958142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_89936688_89942531_89942564_89943571_89943678_89944769_89944841_89946205_89946311_89946559_89946647_89947444_89947501_89949079_89949162_89950457_89950527_89953871_89953979_89956920_89957047_89957734
transcript_59519.known	chr9	-	1882	13	FSM	ENSMUSG00000062270.15	ENSMUST00000085248.12	1882	13	0	0	0	0	multi-exon	FALSE	canonical	3	323	junction_10	2408.59367105002	502	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGCCGTGTTATCAA	NA	False	NA	NA	False	AATAAA	-24	NA	89996768	89973717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89985707_89985825_89989287_89989356_89992178_89992226_89996588
transcript_5952.known	chr10	-	2311	6	FSM	ENSMUSG00000025402.13	ENSMUST00000099157.4	2311	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	16.4851448279959	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCATGGCCCCCTTCCCCT	NA	False	NA	-2	True	AATAAA	-20	NA	127502501	127496787	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_127497649_127499000_127499134_127499218_127499271_127499608_127499743_127500133_127501008_127502244
transcript_59525.known	chr9	-	1824	12	FSM	ENSMUSG00000062270.15	ENSMUST00000169860.8	1824	12	0	0	0	0	multi-exon	FALSE	canonical	3	3415	junction_7	1167.30044572017	1899	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGGCCGTGTTATCAA	NA	False	NA	NA	False	AATAAA	-24	NA	89996827	89973717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89982495_89982577_89984352_89984440_89989287_89989356_89992178_89992226_89996588
transcript_59528.known	chr9	-	1223	11	FSM	ENSMUSG00000062270.15	ENSMUST00000191189.7	1223	11	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	2089.62901970661	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTTTTCTTCCTTTTTTCA	NA	False	NA	NA	False	AATAAA	-15	NA	89996797	89974207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_89974456_89975786_89975872_89976407_89976581_89977173_89977263_89978555_89978658_89979424_89979514_89979916_89979943_89984352_89984440_89989287_89989356_89992178_89992226_89996588
transcript_5954.known	chr10	+	1522	7	FSM	ENSMUSG00000040195.12	ENSMUST00000118612.8	1522	7	0	0	0	0	multi-exon	TRUE	canonical	3	127	junction_4	19.2411595862157	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAGTGAGTTTGACTACTCT	NA	False	NA	NA	False	AATAAA	-23	NA	127512932	127531037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127513097_127524101_127524218_127525093_127525314_127526729_127526803_127528836_127528931_127529352_127529468_127530297
transcript_59542.known	chr9	+	2302	9	FSM	ENSMUSG00000032369.14	ENSMUST00000093801.10	2302	9	0	0	0	0	multi-exon	FALSE	canonical	1	104	junction_4	78.1135991681346	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACGTTTGGCTCCTGTATT	NA	False	NA	NA	False	TATAAA	-23	NA	92131802	92154331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_92132414_92140100_92140128_92141326_92141408_92145085_92145331_92146698_92146742_92148443_92148665_92148764_92148927_92151867_92152030_92153581
transcript_59543.known	chr9	+	1471	9	FSM	ENSMUSG00000032369.14	ENSMUST00000186364.2	1471	9	0	0	0	0	multi-exon	FALSE	canonical	1	9	junction_1	116.228223766863	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAGAGTTGATGTTACT	NA	False	NA	NA	False	NA	NA	NA	92132394	92154028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_92132478_92140100_92140128_92141326_92141408_92145085_92145331_92146698_92146742_92148443_92148665_92148764_92148927_92151867_92152030_92153581
transcript_59545.known	chr9	+	700	5	FSM	ENSMUSG00000074139.9	ENSMUST00000135182.3	700	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.866025403784439	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTGTTTGGCTTTCCCA	NA	False	NA	NA	False	ATTAAA	-22	NA	92233137	92239929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_92233200_92234587_92234750_92235519_92235659_92236597_92236760_92239754
transcript_59546.known	chr9	+	3649	19	FSM	ENSMUSG00000032374.15	ENSMUST00000070522.14	3649	19	0	0	0	0	multi-exon	TRUE	canonical	3	58	junction_10	9.44264688775947	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATTGTGCCTCTCTGTCTTA	NA	False	NA	NA	False	NA	NA	NA	92424275	92490481	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_92424622_92453307_92453400_92455523_92455661_92463254_92463419_92466543_92466657_92468891_92468956_92470653_92470752_92473352_92473455_92475797_92475924_92477314_92477437_92478388_92478494_92480640_92480767_92482793_92482936_92485000_92485115_92486831_92486898_92487425_92487531_92488560_92488708_92488816_92488943_92489127
transcript_59548.known	chr9	-	3111	28	FSM	ENSMUSG00000032407.15	ENSMUST00000217176.2	3111	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	167.860448931548	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGTATATTTCTAAGATGCTG	8302	False	NA	NA	False	CATAAA	-25	NA	95393938	95343457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
transcript_59553.known	chr9	-	3520	27	FSM	ENSMUSG00000032407.15	ENSMUST00000078374.13	3520	27	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_13	216.387107234962	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATAATGTTGTTTTTTTGCCC	8191	False	NA	-1	True	AATAAA	-17	NA	95394049	95343030	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_95343597_95344755_95344933_95346415_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373317_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95384592_95384638_95393869
transcript_59556.nic	chr9	-	2735	26	ISM	ENSMUSG00000032407.15	ENSMUST00000217176.2	3111	28	-14	3032	-5	-3032	5prime_fragment	FALSE	canonical	0	0	junction_11	173.075641267048	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATAAAGAAAAATTGGAATC	8288	False	NA	NA	False	NA	NA	NA	95393952	95346489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_-_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
transcript_59557.nic	chr9	-	2598	25	NIC	ENSMUSG00000032407.15	novel	7630	28	NA	NA	0	-3032	combination_of_known_junctions	FALSE	canonical	0	0	junction_11	209.706673448627	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GATAAAGAAAAATTGGAATC	8293	False	NA	NA	False	NA	NA	NA	95393947	95346489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_95346535_95348598_95348710_95354095_95354256_95356473_95356541_95357254_95357351_95358159_95358317_95359452_95359576_95361319_95361408_95363705_95363786_95364144_95364308_95366222_95366387_95366460_95366528_95367613_95367719_95370798_95370843_95371752_95371965_95372142_95372309_95373143_95373227_95373320_95373354_95373434_95373530_95374376_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95384592_95384638_95393869
transcript_5956.nnic	chr10	+	712	6	NNC	ENSMUSG00000025400.12	novel	514	3	NA	NA	-47	0	at_least_one_novel_splicesite	TRUE	canonical	3	36	junction_5	3.96988664825584	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGACTGATGCAATAGGCTG	NA	False	NA	7	True	AATAAA	-17	NA	127563668	127567637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_127563897_127564039_127564146_127564315_127564346_127564982_127565037_127565344_127565419_127567417
transcript_59561.nic	chr9	-	703	7	ISM	ENSMUSG00000032407.15	ENSMUST00000217176.2	3111	28	-75	30953	35	750	5prime_fragment	FALSE	canonical	3	575	junction_1	112.375363057132	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATTTGGAACTTTTCAAA	8227	False	NA	NA	False	AAAAAG	-22	NA	95394013	95374410	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_-_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95382740_95382873_95384592_95384638_95393869
transcript_59562.nic	chr9	-	496	6	ISM	ENSMUSG00000032407.15	ENSMUST00000078374.13	3520	27	111	31380	0	750	5prime_fragment	FALSE	canonical	3	149	junction_4	273.991678705759	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCAATTTGGAACTTTTCAAA	8302	False	NA	NA	False	AAAAAG	-22	NA	95393938	95374410	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_-_95374445_95375150_95375285_95375755_95375871_95377887_95377987_95384592_95384638_95393869
transcript_59564.known	chr9	+	1319	1	FSM	ENSMUSG00000101037.2	ENSMUST00000187393.2	1319	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATGTACTTGCTTCTGTGA	1399	False	NA	NA	False	AATAAA	-19	NA	95394203	95395522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_95394200_95395500
transcript_59565.known	chr9	-	3704	16	FSM	ENSMUSG00000049493.14	ENSMUST00000093800.9	3704	16	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_4	11.5231168623	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGTTTATTTCATTTAA	NA	False	NA	2	True	AATAAA	-19	NA	95727339	95634694	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_95636491_95636713_95636839_95643365_95643490_95643986_95644121_95647743_95647859_95651146_95651226_95655570_95655767_95657360_95657457_95658518_95658662_95658741_95658908_95664422_95664505_95666152_95666286_95667542_95667673_95668985_95669150_95677814_95677920_95727223
transcript_59570.nnic	chr9	+	1735	12	NNC	ENSMUSG00000041440.19	novel	2815	16	NA	NA	0	-17017	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_11	20.9840553400051	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGAAAGAAAAGAAAGAGAGA	NA	False	NA	NA	False	AAAAAG	-26	NA	96001414	96038501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_96001666_96011053_96011148_96015441_96015518_96019797_96019892_96022591_96022724_96027724_96027801_96032268_96032331_96032487_96032562_96032788_96032850_96035133_96035261_96037445_96037551_96037918
transcript_59573.known	chr9	+	2815	16	FSM	ENSMUSG00000041440.19	ENSMUST00000085217.12	2815	16	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	8.15843122174846	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGTGCCTACTTCACAG	NA	False	NA	NA	False	CATAAA	-13	NA	96001414	96062243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_96001666_96011053_96011148_96015441_96015518_96019797_96019892_96022591_96022724_96027724_96027801_96032268_96032331_96032487_96032562_96032788_96032850_96035133_96035261_96037445_96037551_96053512_96053608_96056742_96056847_96058282_96058343_96059471_96059606_96060973
transcript_59578.known	chr9	+	1713	14	FSM	ENSMUSG00000032411.16	ENSMUST00000188750.7	1713	14	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_3	94.2279120445955	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGACAGGAGAGAACTCATGT	NA	False	NA	-6	True	NA	NA	NA	96078389	96200024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_96078614_96084183_96084242_96105146_96105252_96114734_96114802_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
transcript_59579.known	chr9	+	7354	13	FSM	ENSMUSG00000032411.16	ENSMUST00000034982.16	7354	13	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_3	115.436009209528	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGGTGTCATAATTGGTG	NA	False	NA	NA	False	AATAAA	-14	NA	96078356	96205699	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_96078614_96084183_96084242_96105146_96105252_96155891_96155996_96169653_96169776_96172632_96172681_96177017_96177181_96179679_96179824_96182424_96182494_96188852_96189005_96192574_96192742_96199529_96199636_96199840
transcript_5958.known	chr10	+	2868	4	FSM	ENSMUSG00000040127.14	ENSMUST00000047134.8	2868	4	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTTTTAGTTTATGTTTCA	5808	False	NA	NA	False	AATAAA	-30	NA	127734386	127747630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127734815_127738024_127738284_127739446_127739611_127745613
transcript_59583.known	chr9	-	1994	7	FSM	ENSMUSG00000032412.9	ENSMUST00000034983.7	1994	7	0	0	0	0	multi-exon	FALSE	canonical	3	621	junction_2	81.5754592727222	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAACACATGATGGAGT	NA	False	NA	-10	True	AATAAA	-41	NA	96246495	96214707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_96215748_96217431_96217516_96220711_96220763_96222254_96222440_96225320_96225429_96227817_96227947_96246098
transcript_59587.known	chr9	-	1232	3	FSM	ENSMUSG00000051234.7	ENSMUST00000057500.6	1232	3	0	0	0	0	multi-exon	FALSE	canonical	3	1085	junction_1	10	538	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCTCTTTATTTGGCGGT	3713	False	NA	0	True	ATTAAA	-35	NA	96360728	96352989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_96353906_96356010_96356059_96360460
transcript_59590.known	chr9	-	325	2	FSM	ENSMUSG00000051234.7	ENSMUST00000128955.2	325	2	0	0	0	0	multi-exon	FALSE	canonical	3	1105	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCGCTGTGGTAACCCAGG	3800	False	NA	NA	False	ATTAAA	-15	NA	96360641	96355914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_96356059_96360460
transcript_59591.known	chr9	-	334	3	FSM	ENSMUSG00000051234.7	ENSMUST00000071301.5	334	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	541.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTGGGTAGTCCAAAGAATC	3778	False	NA	NA	False	NA	NA	NA	96360663	96353815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_96353906_96356010_96356059_96360467
transcript_59592.known	chr9	-	5813	24	FSM	ENSMUSG00000032413.13	ENSMUST00000034984.8	5813	24	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	16.7988207345585	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTTCTTTGTGAGACCTT	NA	False	NA	NA	False	AATAAA	-15	NA	96513670	96421352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_96424529_96426331_96426519_96426840_96426945_96427641_96427851_96428299_96428383_96434355_96434463_96435165_96435240_96439452_96439531_96442750_96442835_96448068_96448176_96450416_96450541_96451072_96451148_96451743_96451859_96452718_96452868_96453917_96454075_96458338_96458441_96459525_96459603_96462539_96462613_96464795_96464880_96474002_96474080_96484765_96484861_96488145_96488250_96493434_96493553_96513416
transcript_59593.nnic	chr9	-	854	8	NNC	ENSMUSG00000032413.13	novel	5813	24	NA	NA	-9	-7967	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_1	17.5324771524745	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATTTAGTCTTTTTTCATA	NA	False	NA	-4	True	AATAAA	-21	NA	96513598	96461907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_96462029_96462539_96462613_96464795_96464880_96474002_96474080_96484765_96484861_96488145_96488250_96493434_96493553_96513416
transcript_59594.known	chr9	-	2908	6	FSM	ENSMUSG00000043587.16	ENSMUST00000078478.8	2908	6	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	3.9293765408777	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTTGTACAGCTTACGGTG	NA	False	NA	-2	True	AATAAA	-16	NA	96771482	96705396	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_96707676_96710982_96711123_96721138_96721266_96722011_96722171_96738420_96738553_96771411
transcript_59595.known	chr9	-	2720	3	FSM	ENSMUSG00000046997.6	ENSMUST00000055433.5	2720	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTGTGTAAAGTGCTCTA	NA	False	NA	NA	False	AATAAA	-22	NA	96900896	96825534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_96826758_96877627_96878475_96900246
transcript_59599.nnic	chr9	-	4736	8	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	212	junction_4	351.164593073635	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTTAAGATTTTATAATGGT	NA	False	NA	-4	True	ATTAAA	-37	NA	96993220	96957617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543_96971647_96975129_96975231_96979155_96979234_96982127_96982293_96992963
transcript_59602.known	chr9	-	1203	8	FSM	ENSMUSG00000032449.14	ENSMUST00000153070.8	1203	8	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_3	473.47189214679	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTTTGGTTTTAGGAAGTA	NA	False	NA	NA	False	NA	NA	NA	96993060	96960969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_96961293_96962245_96962536_96967109_96967177_96972145_96972228_96975129_96975231_96979155_96979234_96982127_96982293_96992963
transcript_59604.nnic	chr9	-	2544	8	NNC	ENSMUSG00000032449.14	novel	1203	8	NA	NA	-10	1160	at_least_one_novel_splicesite	FALSE	canonical	3	212	junction_4	351.164593073635	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGTGCAATGGCTTTC	NA	False	NA	-14	True	ATTAAA	-37	NA	96993220	96959809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_96961293_96962245_96962536_96967109_96967177_96971543_96971647_96975129_96975231_96979155_96979234_96982127_96982293_96992963
transcript_59608.known	chr9	-	5227	7	FSM	ENSMUSG00000032449.14	ENSMUST00000085206.11	5227	7	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_3	363.380272197353	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGCTCTTGTTTCCACCT	NA	False	NA	0	True	NA	NA	NA	96993210	96957013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_96961293_96962245_96962536_96967109_96967177_96975129_96975231_96979155_96979234_96982127_96982293_96992963
transcript_59613.known	chr9	-	685	4	FSM	ENSMUSG00000032449.14	ENSMUST00000148337.2	685	4	0	0	0	0	multi-exon	FALSE	canonical	3	669	junction_1	32.124756808418	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCATACCTCTACTGGAGTTA	NA	False	NA	NA	False	NA	NA	NA	96993040	96974865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_96975231_96979155_96979234_96982127_96982293_96992963
transcript_59617.known	chr9	+	798	1	FSM	ENSMUSG00000101502.2	ENSMUST00000190579.2	798	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	10	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTACACTGAATTTTC	NA	False	NA	NA	False	AAAAAG	-33	NA	97061231	97062029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_97061200_97062000
transcript_59618.known	chr9	+	2166	5	FSM	ENSMUSG00000032456.14	ENSMUST00000112935.8	2166	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	3.53553390593274	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTCTCTTTTTTTTTTCTT	NA	False	NA	NA	False	AATAAA	-26	NA	98178635	98293487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_98179034_98236071_98236218_98281508_98281693_98285586_98285667_98292129
transcript_59619.known	chr9	+	2652	4	FSM	ENSMUSG00000046402.11	ENSMUST00000052068.11	2652	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	8.01387685344754	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATCTACCTTCACTTGTTTT	2885	False	NA	41	True	AATAAA	-42	NA	98305013	98328628	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_98307105_98307505_98307685_98326642_98326745_98328348
transcript_5962.known	chr10	+	1583	13	FSM	ENSMUSG00000025395.15	ENSMUST00000026461.8	1583	13	0	0	0	0	multi-exon	FALSE	canonical	2	393	junction_7	89.7794751970998	748	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGTGCTCGGTTCTACCC	984	False	NA	18	True	TATAAA	-20	NA	127851040	127865906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127857601_127858731_127858842_127859451_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
transcript_59620.known	chr9	-	652	1	FSM	ENSMUSG00000051074.5	ENSMUST00000058992.3	652	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAAGTGCAAATACATTGT	NA	False	NA	NA	False	AATAAA	-31	NA	98445664	98445012	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_98445000_98445700
transcript_59622.known	chr9	+	3050	22	FSM	ENSMUSG00000032458.7	ENSMUST00000035033.7	3050	22	0	0	0	0	multi-exon	TRUE	canonical	3	669	junction_10	53.4673910412871	316	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTTGAGTTTCCTTCCT	NA	False	NA	19	True	CATAAA	-20	NA	98445783	98470435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_98445877_98450045_98450184_98452358_98452446_98452635_98452763_98453546_98453696_98455487_98455635_98456118_98456219_98459010_98459154_98459380_98459581_98461033_98461145_98462134_98462224_98462310_98462418_98463187_98463332_98464324_98464456_98464742_98464951_98467035_98467147_98467984_98468200_98469092_98469186_98469277_98469459_98469604_98469674_98469813_98469883_98470097
transcript_59634.known	chr9	-	1197	8	FSM	ENSMUSG00000032459.10	ENSMUST00000035034.10	1197	8	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_2	42.1929484387994	226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTCTGTAATTCGTTTTT	NA	False	NA	-9	True	ATTAAA	-20	NA	98483713	98470782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_98470980_98472087_98472197_98474607_98474754_98476125_98476210_98476722_98476867_98478872_98479038_98480187_98480352_98483525
transcript_59639.known	chr9	+	803	6	FSM	ENSMUSG00000032463.11	ENSMUST00000112911.9	803	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	126.927695953247	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCGATGGCTGTGGTAATTA	3545	False	NA	NA	False	NA	NA	NA	98868426	98883802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_98868566_98872967_98873025_98874153_98874287_98874565_98874795_98881019_98881070_98883607
transcript_59640.nnic	chr9	+	1000	5	NNC	ENSMUSG00000032463.11	novel	1019	5	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	128.230992743564	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTGGGTTTGGTTTCATG	3534	False	NA	9	True	AATAAA	-23	NA	98868415	98884074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_98868566_98874153_98874258_98874565_98874795_98881019_98881070_98883607
transcript_59641.known	chr9	+	1019	5	FSM	ENSMUSG00000032463.11	ENSMUST00000035038.8	1019	5	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_2	16.8430252627015	251	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGGTGGGTTTGGTTTCATG	3544	False	NA	9	True	AATAAA	-23	NA	98868425	98884074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_98868566_98874153_98874287_98874565_98874795_98881019_98881070_98883607
transcript_59642.known	chr9	-	785	5	FSM	ENSMUSG00000096316.8	ENSMUST00000178051.8	785	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	2.6809513236909	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTAGTCTGCAATGTTTT	NA	False	NA	NA	False	ATTAAA	-26	NA	99119292	99111428	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_99111671_99114500_99114551_99116351_99116581_99118292_99118411_99119146
transcript_59643.known	chr9	+	2606	18	FSM	ENSMUSG00000056267.15	ENSMUST00000093795.10	2606	18	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_10	72.0150887688172	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	18	True	AATAAA	-23	NA	99125494	99182457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
transcript_59646.nic	chr9	+	2682	18	NIC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	66	junction_1	83.1088001619555	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	18	True	AATAAA	-23	NA	99125462	99182457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
transcript_59648.nnic	chr9	+	2700	17	NNC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	35	0	intron_retention	TRUE	canonical	2	29	junction_9	88.6342334752775	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	18	True	AATAAA	-23	NA	99125454	99182457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160215_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
transcript_59652.nnic	chr9	+	2523	17	NIC	ENSMUSG00000056267.15	novel	2606	18	NA	NA	35	0	combination_of_known_splicesites	FALSE	canonical	3	26	junction_2	75.3706466404528	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CGTAAGTGTCCCTAGTGACT	NA	False	NA	18	True	AATAAA	-23	NA	99125454	99182457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_99125544_99128319_99128420_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631_99179747_99180555_99180636_99181780
transcript_59654.known	chr9	+	2120	16	FSM	ENSMUSG00000056267.15	ENSMUST00000191335.7	2120	16	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_10	76.0584570504089	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTCTTGAGTTGGATTATA	NA	False	NA	NA	False	ATTAAA	-13	NA	99125515	99180038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681_99145863_99157630_99157801_99159441_99159499_99159989_99160072_99160162_99160252_99163080_99163156_99171248_99171355_99173577_99173749_99178079_99178227_99178328_99178498_99179631
transcript_59656.known	chr9	+	1768	6	FSM	ENSMUSG00000056267.15	ENSMUST00000190715.7	1768	6	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_1	56.4361586219332	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGGTGTTCTTGGTCATCAT	NA	False	NA	7	True	NA	NA	NA	99125513	99146981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_99125544_99128319_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681
transcript_59658.known	chr9	+	740	6	FSM	ENSMUSG00000056267.15	ENSMUST00000185799.7	740	6	0	0	0	0	multi-exon	TRUE	canonical	3	66	junction_1	121.109867475776	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AACAAAATAGAATAAAAGAC	NA	False	NA	NA	False	NA	NA	NA	99125419	99145815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_99125544_99128275_99128420_99136307_99136431_99144598_99144690_99144878_99145003_99145681
transcript_59662.nic	chr9	-	1412	6	NIC	ENSMUSG00000032470.18	novel	1190	6	NA	NA	-269	0	combination_of_known_junctions	FALSE	canonical	3	96	junction_5	168.084978507896	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTGGCGAAGCCCCAAG	2281	False	NA	28	True	ATTAAA	-15	NA	99302474	99270031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99302132
transcript_59665.known	chr9	-	1190	6	FSM	ENSMUSG00000032470.18	ENSMUST00000119472.8	1190	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	193.993195756965	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCCTGGCGAAGCCCCAAG	NA	False	NA	28	True	ATTAAA	-15	NA	99307949	99270031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99307829
transcript_59666.known	chr9	-	4701	6	FSM	ENSMUSG00000032470.18	ENSMUST00000035045.15	4701	6	0	0	0	0	multi-exon	FALSE	canonical	3	447	junction_5	30.9644957976067	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCCTTATTTCCTCTTC	3239	False	NA	-4	True	NA	NA	NA	99319434	99267472	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99318362
transcript_59667.known	chr9	-	1167	6	FSM	ENSMUSG00000032470.18	ENSMUST00000122384.9	1167	6	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_5	190.404411713594	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGGGCTGTTGTCTTCTTAA	3694	False	NA	21	True	GATAAA	-10	NA	99318979	99269980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_99270558_99271785_99271866_99274998_99275099_99276521_99276676_99293445_99293656_99318933
transcript_59670.known	chr9	-	4647	22	FSM	ENSMUSG00000032468.12	ENSMUST00000035043.12	4647	22	0	0	0	0	multi-exon	TRUE	canonical	3	93	junction_7	54.8151294142266	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTTTTCCAAGTGACTG	NA	False	NA	6	True	AATAAA	-35	NA	99450952	99360424	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_99362831_99365152_99365247_99366018_99366092_99369916_99370013_99378203_99378300_99379295_99379446_99381345_99381439_99384564_99384652_99387317_99387400_99387702_99387786_99402539_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
transcript_59676.known	chr9	-	2820	12	FSM	ENSMUSG00000032468.12	ENSMUST00000185524.7	2820	12	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_11	21.8011297000487	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTTTATGTGTGTGATA	NA	False	NA	-1	True	AATAAA	-28	NA	99450702	99400856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_99402636_99405191_99405393_99407405_99407467_99408943_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
transcript_59680.nic	chr9	-	1249	9	ISM	ENSMUSG00000032468.12	ENSMUST00000185524.7	2820	12	-254	7871	-4	-7871	5prime_fragment	FALSE	canonical	3	193	junction_8	23.7276210354093	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCTTGTCTTTAGGGTAA	NA	False	NA	NA	False	ATTAAA	-13	NA	99450956	99408727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_-_99409035_99409131_99409208_99411383_99411465_99415150_99415244_99417847_99417946_99418215_99418359_99419740_99419813_99433595_99433673_99450654
transcript_59681.known	chr9	+	2261	8	FSM	ENSMUSG00000032469.13	ENSMUST00000066650.12	2261	8	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_3	17.2933867270063	120	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCCATCCTGCTGCAT	6406	False	NA	49	True	TATAAA	-1	NA	99457851	99466554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_99458179_99458628_99458754_99460493_99460575_99461409_99461496_99462191_99462417_99464074_99464156_99464369_99464516_99465364
transcript_59693.known	chr9	-	4476	4	FSM	ENSMUSG00000032475.16	ENSMUST00000116522.8	4476	4	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_2	6.34209919681348	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTTATAGCCATATTGA	NA	False	NA	NA	False	AATAAA	-23	NA	100428187	100374345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_100377725_100379310_100380024_100390481_100390726_100428047
transcript_59696.known	chr9	-	1513	3	FSM	ENSMUSG00000032475.16	ENSMUST00000112874.4	1513	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	62	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGATATTGCATCTGT	NA	False	NA	-40	True	AATAAA	-18	NA	100388909	100377055	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_100377725_100379310_100380024_100388778
transcript_59697.known	chr9	-	1590	2	FSM	ENSMUSG00000070287.4	ENSMUST00000093792.4	1590	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCATGATCTTTGTGTCTT	NA	False	NA	NA	False	AATAAA	-19	NA	100453143	100434240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_100435688_100453000
transcript_59699.known	chr9	+	6186	34	FSM	ENSMUSG00000037286.16	ENSMUST00000129269.8	6186	34	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_9	35.0771941586826	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTGTGGTTATCCTGTTGC	NA	False	NA	15	True	AATAAA	-15	NA	100525500	100840598	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_100525850_100587205_100587308_100594490_100594594_100620030_100620196_100639742_100639840_100658808_100658886_100668544_100668750_100678756_100678909_100685333_100685408_100716470_100716595_100727068_100727168_100730711_100730792_100737849_100737958_100748152_100748268_100762828_100762947_100769432_100769537_100769882_100769976_100770074_100770165_100770298_100770503_100771613_100771685_100773101_100773190_100790689_100790771_100810075_100810169_100811893_100812069_100813639_100813780_100824690_100824793_100826821_100826971_100827908_100828038_100829134_100829341_100833659_100833835_100835538_100835650_100836273_100836389_100838421_100838503_100838587
transcript_59702.known	chr9	+	1793	9	FSM	ENSMUSG00000037286.16	ENSMUST00000155108.8	1793	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	140.94009143959	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAAAATGGTTCTCAAGTT	NA	False	NA	0	True	AATAAA	-15	NA	100525688	100839452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_100525850_100587205_100587308_100594490_100594594_100620030_100620196_100639742_100639840_100835545_100835650_100836273_100836389_100838421_100838503_100838587
transcript_59703.known	chr9	+	536	4	FSM	ENSMUSG00000037286.16	ENSMUST00000124487.8	536	4	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	152.993100788529	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAATCTCCAGGAGAAAAG	NA	False	NA	NA	False	AAGAAA	-5	NA	100479850	100620049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_100480163_100587205_100587308_100594490_100594594_100620030
transcript_59704.known	chr9	+	558	3	FSM	ENSMUSG00000037286.16	ENSMUST00000144005.8	558	3	0	0	0	0	multi-exon	FALSE	canonical	3	414	junction_1	2	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTAGCATTGTCTACTG	NA	False	NA	NA	False	NA	NA	NA	100525665	100594762	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_100525850_100587205_100587308_100594490
transcript_59705.known	chr9	-	2320	15	FSM	ENSMUSG00000032527.14	ENSMUST00000035116.12	2320	15	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_12	14.4016722385043	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGGGTGTTGTTTTTTTAT	NA	False	NA	0	True	NA	NA	NA	100916951	100864084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_100864860_100866425_100866526_100867180_100867280_100867583_100867685_100867831_100867940_100869833_100869958_100876620_100876703_100877612_100877734_100881217_100881327_100894757_100894869_100905188_100905303_100909132_100909190_100912227_100912297_100913908_100914029_100916721
transcript_59711.known	chr9	-	4180	13	FSM	ENSMUSG00000032534.19	ENSMUST00000162655.9	4180	13	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_12	13.3260396717604	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAATGGTCTGTTGTCTAAAT	NA	False	NA	NA	False	AATATA	-21	NA	102503733	102461786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_102464212_102471706_102471794_102473320_102473519_102475367_102475483_102478515_102478654_102479616_102479748_102480040_102480275_102484524_102484639_102490493_102490617_102492473_102492570_102496009_102496188_102496890_102496960_102503461
transcript_59717.known	chr9	+	589	3	FSM	ENSMUSG00000035048.14	ENSMUST00000190279.7	589	3	0	0	0	0	multi-exon	TRUE	canonical	3	1105	junction_1	209.5	829	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTTTGCTTCTGTCAAAGT	NA	False	NA	NA	False	ATTAAA	-18	NA	102503494	102511624	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_102503546_102506961_102507088_102511212
transcript_59718.known	chr9	+	727	3	FSM	ENSMUSG00000035048.14	ENSMUST00000188398.7	727	3	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	699	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGTTTTCGTTTTGTTTT	NA	False	NA	25	True	AATAAA	-25	NA	102503522	102511449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_102503887_102506961_102507088_102511212
transcript_59719.known	chr9	+	595	3	FSM	ENSMUSG00000035048.14	ENSMUST00000186693.2	595	3	0	0	0	0	multi-exon	FALSE	canonical	2	118	junction_1	703	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGCCCACTTGGTTTTCGT	NA	False	NA	17	True	AATAAA	-17	NA	102503877	102511441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_102504118_102506961_102507088_102511212
transcript_59720.known	chr9	+	4328	10	FSM	ENSMUSG00000032531.16	ENSMUST00000035121.14	4328	10	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_1	19.0852538254079	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGTCTGTCTGTCTATT	NA	False	NA	17	True	AATAAA	-20	NA	102594866	102610617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_102595102_102597279_102598076_102600767_102601063_102601885_102602031_102602301_102602395_102605515_102605812_102606466_102606778_102607166_102607376_102607991_102608169_102608846
transcript_59721.known	chr9	+	5007	8	FSM	ENSMUSG00000032549.8	ENSMUST00000035155.8	5007	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	2.35606035749581	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCCTTGTTGACTCTTTCT	233	False	NA	10	True	AATAAA	-23	NA	102989005	103062475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_102989426_103017580_103017640_103038018_103038073_103038262_103038369_103039740_103039853_103041008_103041103_103044304_103044372_103058380
transcript_59725.known	chr9	-	2571	17	FSM	ENSMUSG00000032554.16	ENSMUST00000035158.16	2571	17	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_12	9.88982273602515	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGTCTCCTGAGCTCAAG	NA	False	NA	73	True	TATAAA	-6	NA	103107643	103085993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_103086278_103087693_103087878_103089010_103089196_103092391_103092457_103093012_103093143_103094561_103094733_103096421_103096455_103097000_103097092_103098091_103098244_103099249_103099428_103100133_103100313_103100782_103100839_103102241_103102375_103103159_103103337_103104036_103104146_103105094_103105268_103107372
transcript_59726.known	chr9	-	2284	17	FSM	ENSMUSG00000033688.11	ENSMUST00000035163.10	2284	17	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0.927024810886958	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAGTGTTCTCAGATTTGA	NA	False	NA	NA	False	AATAAA	-23	NA	103165496	103127719	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_103127862_103128989_103129177_103131838_103132024_103133763_103133829_103136568_103136711_103140228_103140385_103143401_103143459_103144830_103144922_103145510_103145654_103146810_103146983_103149685_103149865_103152139_103152196_103154654_103154803_103156571_103156734_103158233_103158343_103159693_103159867_103165379
transcript_59729.known	chr9	+	5224	28	FSM	ENSMUSG00000032555.11	ENSMUST00000035164.10	5224	28	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_13	76.5309229485215	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTGATTTGTTCATTT	953	False	NA	14	True	AATAAA	-19	NA	103182413	103227627	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_103182571_103183295_103183387_103185943_103186079_103187015_103187160_103188692_103188875_103189970_103190168_103192252_103192430_103195185_103195353_103197367_103197532_103197672_103197921_103200466_103200826_103201525_103201699_103202840_103203053_103205605_103205893_103209883_103210055_103210143_103210254_103211254_103211379_103213010_103213158_103213262_103213366_103215378_103215572_103219126_103219348_103220746_103220896_103221123_103221236_103221989_103222154_103222940_103223079_103223882_103223973_103224125_103224288_103226980
transcript_59731.nic	chr9	+	2106	11	NIC	ENSMUSG00000032555.11	novel	5224	28	NA	NA	1324	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	192.403638219239	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGTATTGATTTGTTCATTT	2362	False	NA	14	True	AATAAA	-19	NA	103211251	103227627	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_103211379_103213262_103213366_103215378_103215572_103219126_103219348_103220746_103220896_103221123_103221236_103221989_103222154_103222940_103223079_103223882_103223973_103224125_103224288_103226980
transcript_59732.known	chr9	-	554	5	FSM	ENSMUSG00000032803.16	ENSMUST00000189875.8	554	5	0	0	0	0	multi-exon	TRUE	canonical	3	42	junction_2	179.509052696514	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGGCATCAGATGGAAAATTT	NA	False	NA	NA	False	AATAAA	-18	NA	103242326	103233122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_103233229_103233478_103233633_103237074_103237218_103241173_103241251_103242252
transcript_59733.known	chr9	-	2145	6	FSM	ENSMUSG00000042757.17	ENSMUST00000189066.2	2145	6	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	9.53729521405309	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCGGTTGCACTGATTGCTTC	NA	False	NA	NA	False	AATAAA	-17	NA	103638993	103361634	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_103361983_103366387_103366543_103376000_103377408_103486909_103486992_103630053_103630167_103638953
transcript_59734.known	chr9	-	2850	6	FSM	ENSMUSG00000042757.17	ENSMUST00000189588.7	2850	6	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_4	14.324803663576	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAGAAAAAAATAAAAGATT	NA	False	NA	NA	False	ATTAAA	-6	NA	103639036	103360976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_103361983_103366387_103366543_103376000_103377408_103486909_103486996_103630053_103630167_103638953
transcript_59735.known	chr9	-	1591	2	FSM	ENSMUSG00000042757.17	ENSMUST00000186455.3	1591	2	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	103638989	103628611	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_103630167_103638953
transcript_59736.known	chr9	+	3444	20	FSM	ENSMUSG00000090150.11	ENSMUST00000047799.13	3444	20	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	6.62112793865633	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATTATTTTCAGTCCTAAA	NA	False	NA	92	True	NA	NA	NA	103940884	104004924	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_103941103_103950820_103950921_103953015_103953142_103953528_103953691_103955761_103955927_103958429_103958572_103958896_103959019_103959989_103960097_103961359_103961487_103967456_103967535_103968790_103968930_103972719_103972828_103974552_103974652_103990660_103990728_103991651_103991738_103992476_103992549_103993363_103993519_104000245_104000363_104001216_104001327_104003780
transcript_59737.nnic	chr9	-	2276	14	NNC	ENSMUSG00000032557.14	novel	2404	12	NA	NA	-7	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_2	152.222586945339	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAATGCACCTGCTTTGAG	NA	False	NA	-20	True	AATAAA	-11	NA	103940340	103923804	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_103924188_103924254_103924354_103924414_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
transcript_59740.known	chr9	-	2404	12	FSM	ENSMUSG00000032557.14	ENSMUST00000035166.12	2404	12	0	0	0	0	multi-exon	FALSE	canonical	3	388	junction_1	40.2171790110061	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTGCTTTGAGATTCTAG	NA	False	NA	-13	True	AATAAA	-18	NA	103940333	103923797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_103924886_103926432_103926540_103926721_103926801_103927033_103927170_103931261_103931390_103931552_103931658_103932388_103932474_103933001_103933089_103934072_103934183_103937416_103937507_103937592_103937639_103939990
transcript_59745.known	chr9	+	3972	10	FSM	ENSMUSG00000032563.17	ENSMUST00000035177.15	3972	10	0	0	0	0	multi-exon	FALSE	canonical	3	494	junction_1	31.6489229040682	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGCCTCATCAAAGATGGTG	NA	False	NA	NA	False	AATAAA	-27	NA	104930437	104957087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_104930712_104931619_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360_104952439_104954191
transcript_59747.known	chr9	+	2309	9	FSM	ENSMUSG00000032563.17	ENSMUST00000149243.8	2309	9	0	0	0	0	multi-exon	FALSE	canonical	3	494	junction_1	31.1879383736726	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTTATGTCCTTTTTTGTG	NA	False	NA	NA	False	AATAAA	-2	NA	104930437	104953671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_104930712_104931619_104931805_104932793_104932886_104934223_104934323_104939097_104939198_104941262_104941324_104948574_104948684_104950973_104951052_104952360
transcript_59748.known	chr9	-	1631	3	FSM	ENSMUSG00000032565.10	ENSMUST00000035179.9	1631	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	2	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGCTGTCTGGCTTCAATG	NA	False	NA	NA	False	ATTAAA	-6	NA	105009023	105006530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_105007710_105008491_105008762_105008841
transcript_5975.known	chr10	+	3128	11	FSM	ENSMUSG00000025395.15	ENSMUST00000133285.8	3128	11	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_1	41.6424062705315	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGGCCTCAATCCTTGAA	1008	False	NA	23	True	AATAAA	-16	NA	127851064	127865734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127851221_127851832_127851991_127853844_127853952_127854016_127854091_127855998_127856136_127857541_127859544_127859649_127859789_127862386_127862457_127862921_127863008_127865054_127865154_127865634
transcript_59750.known	chr9	-	2147	1	FSM	ENSMUSG00000032565.10	ENSMUST00000186933.3	2147	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	105009018	105006871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_105006900_105009000
transcript_59751.known	chr9	-	1326	2	FSM	ENSMUSG00000032565.10	ENSMUST00000190375.2	1326	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAACAAAAACAAAA	NA	False	NA	NA	False	NA	NA	NA	105008979	105006871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_105007710_105008491
transcript_59753.known	chr9	-	1449	4	FSM	ENSMUSG00000032570.18	ENSMUST00000176787.2	1449	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	180.31638860625	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AGAAAAAGAAAAACTAATTT	NA	False	NA	NA	False	ATTAAA	-41	NA	105372304	105346305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_105347347_105370741_105370754_105371613_105371797_105372091
transcript_59755.nic	chr9	+	2423	6	NIC	ENSMUSG00000032567.17	novel	841	5	NA	NA	-39	0	intron_retention	FALSE	canonical	3	20	junction_4	18.4932420089069	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAGATTTACAGTTCTAGC	NA	False	NA	NA	False	AATAAA	-14	NA	105272551	105282527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_105272865_105273743_105275058_105278674_105278886_105279916_105279976_105280594_105280791_105282197
transcript_59756.nic	chr9	+	2562	6	NIC	ENSMUSG00000032567.17	novel	2349	6	NA	NA	-39	0	intron_retention	FALSE	canonical	3	20	junction_4	18.4932420089069	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTCTGTATTTATTTATATG	NA	False	NA	NA	False	AATACA	-16	NA	105272551	105282666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_105272865_105273743_105275058_105278674_105278886_105279916_105279976_105280594_105280791_105282197
transcript_59760.known	chr9	+	2755	5	FSM	ENSMUSG00000032567.17	ENSMUST00000035181.10	2755	5	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	8.45576726264388	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTTGGGTTTTTTTAAAT	NA	False	NA	NA	False	CATAAA	-29	NA	105272590	105282957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_105272865_105273743_105275058_105278674_105278886_105280594_105280791_105282197
transcript_59766.known	chr9	+	3747	9	FSM	ENSMUSG00000020257.14	ENSMUST00000020490.13	3747	9	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_3	24.1958157539687	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCATTGAGTTTCTGTA	NA	False	NA	54	True	NA	NA	NA	106048126	106068338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_106048579_106053811_106053910_106057764_106057832_106060814_106060915_106061378_106061496_106061881_106062038_106062447_106062518_106063568_106063712_106065794
transcript_59769.known	chr9	+	1596	9	FSM	ENSMUSG00000023277.14	ENSMUST00000024047.12	1596	9	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_8	33.0111250186963	279	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGAGCCTGGGTGCCTTT	NA	False	NA	19	True	AATAAA	-16	NA	106080306	106092588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_106080484_106084087_106084166_106088917_106089097_106089454_106089551_106089930_106090036_106090136_106090263_106091299_106091451_106091554_106091677_106092026
transcript_59774.known	chr9	-	3399	11	FSM	ENSMUSG00000032786.17	ENSMUST00000141118.9	3399	11	0	0	0	0	multi-exon	TRUE	canonical	3	139	junction_7	18.0612845611822	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCCCTTGTCTTGTTATGA	7778	False	NA	NA	False	NA	NA	NA	106125853	106110656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_106111397_106112586_106112750_106113638_106113908_106115273_106115439_106115841_106116022_106116730_106116916_106118314_106118538_106118834_106118985_106120360_106120595_106123957_106124178_106124983
transcript_59775.known	chr9	-	2129	11	FSM	ENSMUSG00000032786.17	ENSMUST00000074082.13	2129	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	54.5879107495423	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATAGTCCTGGTTAGTGTG	8576	False	NA	-14	True	AATAAA	-31	NA	106125055	106111125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_106111397_106112586_106112750_106113638_106113908_106115273_106115436_106115841_106116022_106116730_106116916_106118314_106118538_106118834_106118985_106120360_106120595_106123957_106124178_106124983
transcript_59777.known	chr9	+	2337	11	FSM	ENSMUSG00000023345.18	ENSMUST00000072206.14	2337	11	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_9	19.0265603827912	194	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTGCTTTGCCTGATCTT	9557	False	NA	22	True	AGTAAA	-16	NA	106158259	106227720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_106158656_106160050_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106207071_106207216_106226880
transcript_59778.nic	chr9	+	1428	11	NIC	ENSMUSG00000023345.18	novel	2337	11	NA	NA	-82	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_9	88.6248272212702	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAGCCACATCTTACCCAG	9794	False	NA	7	True	AATAAA	-19	NA	106158496	106227076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_106158656_106160050_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106207099_106207216_106226880
transcript_59779.known	chr9	+	1242	10	FSM	ENSMUSG00000023345.18	ENSMUST00000191434.2	1242	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	133.805644938037	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGTCTGGGATTGGGTGC	9876	False	NA	22	True	AATAAA	-34	NA	106158578	106227091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_106158656_106160053_106160136_106162079_106162252_106162591_106162772_106163978_106164087_106165189_106165306_106172339_106172474_106182463_106182533_106185139_106185233_106226880
transcript_59783.known	chr9	+	583	4	FSM	ENSMUSG00000048758.15	ENSMUST00000098994.7	583	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	2179.51131117862	270	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTGCAGATGACCAGTGTC	NA	False	NA	-57	True	NA	NA	NA	106306736	106308707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_106306776_106307174_106307214_106307506_106307572_106308267
transcript_59787.known	chr9	+	466	4	FSM	ENSMUSG00000048758.15	ENSMUST00000217081.2	466	4	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	2158.78427721613	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGGCCATCAAGGCCCTGG	NA	False	NA	NA	False	NA	NA	NA	106306760	106308371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_106307013_106307168_106307214_106307506_106307572_106308267
transcript_59790.known	chr9	+	710	4	FSM	ENSMUSG00000048758.15	ENSMUST00000059802.7	710	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2185.50085792708	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTTGTGTCTGTTGTCATA	NA	False	NA	2	True	AATAAA	-18	NA	106306737	106308766	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_106306839_106307168_106307214_106307506_106307572_106308267
transcript_59792.nic	chr9	-	1599	15	NIC	ENSMUSG00000023262.14	novel	1529	15	NA	NA	-83	0	combination_of_known_junctions	FALSE	canonical	3	284	junction_14	59.3909565025326	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCTTAATACTGTGGACA	NA	False	NA	-16	True	AATAAA	-18	NA	106315601	106310188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314933_106315331
transcript_59793.known	chr9	-	1529	15	FSM	ENSMUSG00000023262.14	ENSMUST00000024031.13	1529	15	0	0	0	0	multi-exon	FALSE	canonical	3	198	junction_14	78.143510052117	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTGTGGACAGTCATGGAA	NA	False	NA	-7	True	AATAAA	-27	NA	106315518	106310179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106313894_106314000_106314087_106314153_106314827_106314937_106315331
transcript_59798.known	chr9	-	1284	14	FSM	ENSMUSG00000023262.14	ENSMUST00000214275.2	1284	14	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_11	137.635441630778	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTCTTAATACTGTGGACA	NA	False	NA	-16	True	AATAAA	-18	NA	106315387	106310188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106313420_106314087_106314153_106314827_106314937_106315331
transcript_59799.known	chr9	-	1832	14	FSM	ENSMUSG00000023262.14	ENSMUST00000187324.8	1832	14	0	0	0	0	multi-exon	FALSE	canonical	3	284	junction_13	61.5898823628318	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTTCTTAATACTGTGGAC	NA	False	NA	-17	True	AATAAA	-17	NA	106315360	106310189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_106310445_106310560_106310622_106310765_106310846_106311728_106311798_106311883_106312029_106312163_106312214_106312294_106312369_106312666_106312724_106312813_106312904_106312982_106313060_106313324_106314000_106314087_106314153_106314827_106314933_106315331
transcript_598.known	chr1	+	1094	6	FSM	ENSMUSG00000026111.16	ENSMUST00000114925.10	1094	6	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_1	76.7739539166767	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGTGACTGTTTATTT	NA	False	NA	NA	False	AATAAA	-13	NA	37469219	37478065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_37469364_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
transcript_59815.known	chr9	-	1256	7	FSM	ENSMUSG00000042210.18	ENSMUST00000048685.13	1256	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	104.56165113888	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGACGTTGTGTTTCCTGAC	NA	False	NA	1	True	AATAAA	-28	NA	106324877	106317249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322851_106322969_106323029_106324729
transcript_59817.nic	chr9	-	1299	7	NIC	ENSMUSG00000042210.18	novel	1262	6	NA	NA	-36	0	combination_of_known_junctions	TRUE	canonical	0	0	junction_2	104.893067242576	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGACGTTGTGTTTCCT	NA	False	NA	-2	True	AATAAA	-25	NA	106324913	106317252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_106317604_106317819_106318056_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323034_106324729
transcript_59820.nic	chr9	-	1353	7	NIC	ENSMUSG00000042210.18	novel	1262	6	NA	NA	-36	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_2	104.893067242576	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTGACGTTGTGTTTCCT	NA	False	NA	-2	True	AATAAA	-25	NA	106324913	106317252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_106317604_106317819_106318110_106321025_106321142_106321288_106321506_106322724_106322856_106322969_106323034_106324729
transcript_59823.known	chr9	+	1745	4	FSM	ENSMUSG00000042073.16	ENSMUST00000048527.15	1745	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.4142135623731	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTTTTGCTGTCTCCGG	NA	False	NA	13	True	AATAAA	-20	NA	106325573	106330122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_106325909_106327202_106327431_106328591_106328834_106329182
transcript_59825.nnic	chr9	+	2024	13	NNC	ENSMUSG00000023495.14	novel	2035	13	NA	NA	-23	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_7	107.29813087323	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGCAGTAATACTAGTG	1577	False	NA	27	True	AATAAA	-20	NA	106331017	106341211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_106331207_106337203_106337349_106337474_106337499_106337595_106337629_106337849_106337967_106338191_106338324_106338463_106338559_106339047_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706_106339877_106340329
transcript_59826.known	chr9	+	2035	13	FSM	ENSMUSG00000023495.14	ENSMUST00000024260.14	2035	13	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_11	32.902212016148	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTGCAGTAATACTAGTG	1600	False	NA	27	True	AATAAA	-20	NA	106331040	106341211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_106331207_106337203_106337349_106337474_106337499_106337595_106337629_106337849_106337967_106338191_106338324_106338463_106338593_106339047_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706_106339877_106340329
transcript_59827.nic	chr9	+	1857	13	NIC	ENSMUSG00000023495.14	novel	2035	13	NA	NA	-23	-4	combination_of_known_junctions	FALSE	canonical	3	30	junction_12	99.8749217771909	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAGCTGTGCAGTAATACT	1577	False	NA	23	True	AATAAA	-16	NA	106331017	106341207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_106331207_106337203_106337349_106337474_106337499_106337595_106337629_106337849_106337967_106338191_106338324_106338463_106338593_106339047_106339123_106339267_106339313_106339387_106339452_106339560_106339614_106339706_106339877_106340526
transcript_5983.known	chr10	+	885	8	FSM	ENSMUSG00000061315.15	ENSMUST00000073868.9	885	8	0	0	0	0	multi-exon	FALSE	canonical	3	9741	junction_1	845.476607528293	9605	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGCAGGTGCTAGATCTT	4912	False	NA	0	True	AATAAA	-24	NA	127871443	127884502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127871553_127872357_127872430_127882036_127882123_127882597_127882676_127883526_127883674_127883867_127883997_127884113_127884237_127884361
transcript_59837.known	chr9	-	2030	11	FSM	ENSMUSG00000023249.16	ENSMUST00000112479.9	2030	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	3.2	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACGTTTTGAAGCAGG	NA	False	NA	NA	False	NA	NA	NA	106353868	106348187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_106348602_106348958_106349115_106350227_106350406_106350631_106350719_106350879_106351033_106351256_106351484_106351595_106351735_106351878_106352068_106352221_106352348_106352997_106353182_106353691
transcript_59838.known	chr9	-	2962	11	FSM	ENSMUSG00000023249.16	ENSMUST00000067218.14	2962	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	2.71293199325011	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACCCACTGGTTTCATTTCC	NA	False	NA	NA	False	NA	NA	NA	106354148	106347520	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_106348602_106348958_106349115_106350227_106350406_106350631_106350719_106350879_106351033_106351256_106351484_106351595_106351720_106351878_106352068_106352221_106352348_106352997_106353182_106353691
transcript_59839.known	chr9	+	1586	15	FSM	ENSMUSG00000041506.16	ENSMUST00000047721.10	1586	15	0	0	0	0	multi-exon	FALSE	canonical	3	1203	junction_11	74.9465115388084	1476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTCCCTTGTTCCTCTGGTTT	NA	False	NA	23	True	ATTAAA	-23	NA	106354467	106362623	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360236_106360317_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
transcript_59840.known	chr9	+	1611	14	FSM	ENSMUSG00000041506.16	ENSMUST00000125630.8	1611	14	0	0	0	0	multi-exon	FALSE	canonical	3	1203	junction_10	77.2574272104087	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACCTTGTTCTCCCTTGTTCC	NA	False	NA	15	True	ATTAAA	-15	NA	106354516	106362615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_106354634_106354869_106354953_106357894_106358005_106358354_106358423_106358511_106358554_106358958_106359086_106360110_106360411_106360755_106360857_106360945_106361081_106361164_106361228_106361409_106361556_106361638_106361719_106362275_106362350_106362450
transcript_59841.known	chr9	-	667	2	FSM	ENSMUSG00000023249.16	ENSMUST00000139362.2	667	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGCCAAATAACGTTTTGA	NA	False	NA	NA	False	NA	NA	NA	106349217	106348193	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_106348602_106348958
transcript_59843.known	chr9	-	1896	6	FSM	ENSMUSG00000040813.17	ENSMUST00000163441.8	1896	6	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_5	161.744242555956	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTGGTTTTTGTCTG	7972	False	NA	0	True	AATAAA	-28	NA	106563022	106535944	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106562442
transcript_59844.known	chr9	-	1364	6	FSM	ENSMUSG00000040813.17	ENSMUST00000169068.8	1364	6	0	0	0	0	multi-exon	TRUE	canonical	3	151	junction_5	120.179865202121	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGTTGGTTTTTGTCTG	8113	False	NA	0	True	AATAAA	-28	NA	106562881	106535944	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106562833
transcript_59845.known	chr9	-	1391	6	FSM	ENSMUSG00000040813.17	ENSMUST00000046735.11	1391	6	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_5	67.9187750183997	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGATTTGAGTTGGTTTT	7880	False	NA	-6	True	AATAAA	-22	NA	106563114	106535950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562127_106562195_106563033
transcript_59847.nic	chr9	-	1428	6	NIC	ENSMUSG00000040813.17	novel	1391	6	NA	NA	-43	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_4	172.206387802543	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGATTTGAGTTGGTTTT	7825	False	NA	-6	True	AATAAA	-22	NA	106563169	106535950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_106536507_106539558_106539728_106550715_106550938_106559066_106559363_106562145_106562195_106563033
transcript_59848.known	chr9	-	822	5	FSM	ENSMUSG00000040813.17	ENSMUST00000188892.7	822	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	202.069758994264	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTTTCTCCTGGGGCAGG	7868	False	NA	NA	False	NA	NA	NA	106563126	106536435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_106536507_106539558_106539728_106550715_106550938_106562127_106562195_106562833
transcript_59850.known	chr9	-	2418	1	FSM	ENSMUSG00000040661.7	ENSMUST00000191300.2	2418	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAAGATTTT	7313	False	NA	NA	False	NA	NA	NA	106666375	106663957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_106664000_106666400
transcript_59853.known	chr9	-	2247	4	FSM	ENSMUSG00000032575.17	ENSMUST00000159283.8	2247	4	0	0	0	0	multi-exon	FALSE	canonical	3	771	junction_3	24.1660919471891	611	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAAAAGATAGGCGGACCCG	NA	False	NA	NA	False	NA	NA	NA	106769178	106764613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_106766425_106767359_106767502_106768269_106768398_106769012
transcript_59854.nnic	chr9	-	2705	12	NNC	ENSMUSG00000032577.17	novel	2816	11	NA	NA	-31	3	at_least_one_novel_splicesite	TRUE	canonical	3	142	junction_1	26.8365114556165	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGATTCCTGGGTTTCTT	NA	False	NA	-7	True	AATAAA	-19	NA	107167009	107132130	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_107132548_107132586_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166723
transcript_59855.nnic	chr9	-	2812	12	NNC	ENSMUSG00000032577.17	novel	2816	11	NA	NA	-42	1	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	60.0594746552762	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCAATGATTCCTGGGTTTC	NA	False	NA	-9	True	AATAAA	-17	NA	107167118	107132132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_107132522_107132560_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166723
transcript_59856.known	chr9	-	2816	11	FSM	ENSMUSG00000032577.17	ENSMUST00000035194.8	2816	11	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_10	23.3752005338992	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCCTGGGTTTCTTTATGT	NA	False	NA	-2	True	AATAAA	-24	NA	107167076	107132125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107133535_107134260_107134342_107134613_107134700_107135528_107135654_107136012_107136089_107137243_107137368_107139076_107139157_107139621_107139687_107140823_107140964_107166318_107166596_107166723
transcript_59861.known	chr9	-	1000	3	FSM	ENSMUSG00000032577.17	ENSMUST00000141596.2	1000	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	78.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTTGGCTGGGTTTTTTT	NA	False	NA	NA	False	NA	NA	NA	107166978	107161872	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107162341_107166318_107166596_107166723
transcript_59862.known	chr9	+	2850	3	FSM	ENSMUSG00000032578.8	ENSMUST00000085102.6	2850	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	1	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCGCGTGGTTTGACCTC	NA	False	NA	NA	False	AATAAA	-43	NA	107173224	107179186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107174234_107177122_107177344_107177566
transcript_59868.known	chr9	-	2192	11	FSM	ENSMUSG00000032579.15	ENSMUST00000035196.14	2192	11	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_9	21.6296093353532	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGACTGCCTCTTTTCACG	NA	False	NA	NA	False	NA	NA	NA	107215549	107204282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107214199_107214578_107215479
transcript_59869.nnic	chr9	-	1551	11	NNC	ENSMUSG00000032579.15	novel	2192	11	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_9	53.3310416174295	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAATAAATGGTGAGCCAG	NA	False	NA	-32	True	AGTAAA	-11	NA	107215574	107204910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107214237_107214578_107215479
transcript_59873.nnic	chr9	-	1186	10	NIC	ENSMUSG00000032579.15	novel	2192	11	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	10	junction_9	55.2618905142583	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAATAAATGGTGAGCCAG	NA	False	NA	-32	True	AGTAAA	-11	NA	107215549	107204910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107213863_107215479
transcript_59876.known	chr9	-	1888	10	FSM	ENSMUSG00000032579.15	ENSMUST00000148165.7	1888	10	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_9	18.5818177425483	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTGTTATTAACATTCA	NA	False	NA	-12	True	AATAAA	-12	NA	107215516	107204890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107205272_107205374_107205489_107205633_107205730_107206522_107206632_107207971_107208022_107208289_107208355_107208643_107208779_107213377_107213472_107213770_107214578_107215479
transcript_59884.known	chr9	+	2599	6	FSM	ENSMUSG00000037977.7	ENSMUST00000042581.4	2599	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.32664991614216	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTGGAGTCTGTGACACTT	NA	False	NA	NA	False	ATTAAA	-28	NA	107217800	107226891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107217988_107218509_107218617_107219405_107219789_107223344_107223371_107224016_107224165_107225143
transcript_59886.known	chr9	+	2194	2	FSM	ENSMUSG00000010045.3	ENSMUST00000010189.3	2194	2	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	0	62	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTTGTGCAGCCCTCTC	NA	False	NA	33	True	AATAAA	-38	NA	107411143	107415872	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107412529_107415063
transcript_59887.known	chr9	-	1162	4	FSM	ENSMUSG00000037190.13	ENSMUST00000195235.6	1162	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_2	4.08248290463863	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGTCGGGAGGAGCAGCGC	NA	False	NA	-20	True	AATAAA	-19	NA	107419392	107416773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107417585_107418201_107418240_107418695_107418850_107419233
transcript_59888.known	chr9	-	658	4	FSM	ENSMUSG00000037190.13	ENSMUST00000194967.2	658	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	45.536310297998	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTGCCAGCCTCCTGTTGG	NA	False	NA	NA	False	NA	NA	NA	107419326	107417240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107417585_107418201_107418269_107418695_107418850_107419233
transcript_59889.known	chr9	-	637	3	FSM	ENSMUSG00000037190.13	ENSMUST00000194906.2	637	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	54	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCAGTTATTACGAAGGCT	NA	False	NA	NA	False	NA	NA	NA	107419323	107417075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107417585_107418201_107418240_107419233
transcript_59891.known	chr9	+	1441	11	FSM	ENSMUSG00000010057.9	ENSMUST00000010201.9	1441	11	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_4	11.6721891691319	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTGAGTACTGCTTCAGCC	NA	False	NA	13	True	AATAAA	-24	NA	107419424	107422905	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107421834_107421945_107422040_107422112_107422231_107422443_107422587_107422689
transcript_59894.known	chr9	+	1736	9	FSM	ENSMUSG00000010057.9	ENSMUST00000193628.6	1736	9	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_4	11.1235954169504	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCCTGTGGAATATTGAGTA	NA	False	NA	2	True	AATAAA	-13	NA	107419443	107422894	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107419653_107420180_107420273_107420366_107420536_107420705_107420815_107421349_107421487_107421578_107421677_107421796_107422040_107422112_107422587_107422689
transcript_59896.known	chr9	+	1727	5	FSM	ENSMUSG00000010067.14	ENSMUST00000010211.7	1727	5	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_4	9.63068014212911	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGTTTTGGACTCTATAGA	NA	False	NA	9	True	AATAAA	-16	NA	107431781	107439462	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107432125_107434651_107434757_107434968_107435267_107435385_107435502_107438597
transcript_59897.known	chr9	+	1893	4	FSM	ENSMUSG00000010047.13	ENSMUST00000010191.13	1893	4	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_3	7.31816613336672	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTCTTGTCTTTTTCTGC	NA	False	NA	15	True	ATTAAA	-17	NA	107446315	107449975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107446433_107447302_107448270_107448690_107448781_107449256
transcript_599.nic	chr1	+	1157	6	NIC	ENSMUSG00000026111.16	novel	1179	6	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	188.928134485047	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	37469214	37478068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_+_37469419_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
transcript_59901.known	chr9	+	3014	4	FSM	ENSMUSG00000010051.16	ENSMUST00000010195.14	3014	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	10.4029910228848	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCGCCTGTGGTCCCCAA	NA	False	NA	31	True	NA	NA	NA	107454156	107458177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107454278_107454751_107455676_107456079_107456170_107456298
transcript_59905.known	chr9	+	2053	2	FSM	ENSMUSG00000079334.9	ENSMUST00000093785.6	2053	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACAGTTTATTGGTT	NA	False	NA	12	True	AATAAA	-18	NA	107457315	107461249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107458135_107460015
transcript_59910.known	chr9	+	2056	12	FSM	ENSMUSG00000010048.11	ENSMUST00000010192.11	2056	12	0	0	0	0	multi-exon	TRUE	canonical	3	631	junction_11	35.5716016363504	422	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCCTTTATCCTGAGTC	NA	False	NA	21	True	ATTAAA	-33	NA	107464840	107470237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467622_107467703_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
transcript_59918.known	chr9	+	2054	11	FSM	ENSMUSG00000010048.11	ENSMUST00000194932.6	2054	11	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_10	36.8511872264653	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCCTTTATCCTGAGTC	NA	False	NA	21	True	ATTAAA	-33	NA	107464924	107470237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107465146_107467101_107467222_107467307_107467393_107467496_107467862_107467994_107468046_107468130_107468310_107468400_107468507_107468766_107468905_107469273_107469403_107469474_107469571_107469673
transcript_59927.known	chr9	-	1777	9	FSM	ENSMUSG00000032562.14	ENSMUST00000192615.6	1777	9	0	0	0	0	multi-exon	FALSE	canonical	3	246	junction_1	364.681860496241	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCGTGTTCTTTTCTCCT	4825	False	NA	0	True	AATAAA	-24	NA	107512511	107491323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107491915_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618_107497662_107512298
transcript_59928.known	chr9	-	2215	9	FSM	ENSMUSG00000032562.14	ENSMUST00000055704.12	2215	9	0	0	0	0	multi-exon	FALSE	canonical	3	1026	junction_1	123.439193026364	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCCGTGTTCTTTTCTCCT	4770	False	NA	0	True	AATAAA	-24	NA	107512566	107491323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107492298_107492810_107493025_107493353_107493508_107493612_107493743_107494133_107494263_107496895_107497057_107497245_107497388_107497618_107497662_107512298
transcript_59930.known	chr9	-	2463	16	FSM	ENSMUSG00000010064.16	ENSMUST00000193932.6	2463	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	1.9731531449265	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAGACCGATTGTGTTCTA	9779	False	NA	NA	False	TATAAA	-9	NA	107544625	107528359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107529238_107529327_107529432_107532221_107532367_107532454_107532580_107532783_107532885_107533133_107533214_107533298_107533470_107533654_107533714_107533793_107533877_107534828_107534911_107535008_107535102_107535192_107535267_107535835_107535952_107536130_107536210_107536293_107536444_107544502
transcript_59932.nic	chr9	-	3409	25	NIC	ENSMUSG00000032580.13	novel	3205	25	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	17	junction_24	145.293470976274	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGTTTCCTGTGTCTTTA	9705	False	NA	-6	True	AAGAAA	-12	NA	107648195	107617698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107647750
transcript_59933.known	chr9	-	3205	25	FSM	ENSMUSG00000032580.13	ENSMUST00000182659.8	3205	25	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_19	112.690456068333	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGACTCTTTATGTAGCCTA	9705	False	NA	NA	False	NA	NA	NA	107648195	107617569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626999_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
transcript_59936.known	chr9	-	1939	6	FSM	ENSMUSG00000032580.13	ENSMUST00000182007.8	1939	6	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_1	28.8027776438315	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAATTAAAACCAATAAG	9742	False	NA	NA	False	NA	NA	NA	107648158	107635642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
transcript_59938.known	chr9	-	897	4	FSM	ENSMUSG00000032580.13	ENSMUST00000182073.8	897	4	0	0	0	0	multi-exon	FALSE	canonical	3	324	junction_3	29.4278779391243	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCTACACAGAGAAACCCTGT	9712	False	NA	NA	False	NA	NA	NA	107648188	107642289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107642850_107644741_107644908_107646759_107646826_107648083
transcript_59940.known	chr9	-	3064	25	FSM	ENSMUSG00000032580.13	ENSMUST00000035199.13	3064	25	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_9	145.554250815823	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGGTTTCCTGTGTCTTTA	9714	False	NA	-6	True	AAGAAA	-12	NA	107648186	107617698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107618292_107619590_107619721_107619799_107619898_107621035_107621111_107621381_107621562_107622133_107622206_107622285_107622436_107623217_107623380_107626906_107626996_107627206_107627292_107627661_107627748_107628917_107628991_107629074_107629153_107629309_107629398_107630175_107630274_107631220_107631382_107631621_107631688_107633051_107633113_107634107_107634192_107636974_107637049_107637520_107637591_107642693_107642850_107644741_107644908_107646759_107646826_107648083
transcript_59946.known	chr9	-	3716	21	FSM	ENSMUSG00000032582.15	ENSMUST00000183032.8	3716	21	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_19	71.8828734817968	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTTGTTAAAGTTTTT	7513	False	NA	NA	False	AATAAA	-18	NA	107750020	107650761	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730603_107737547_107737659_107749847
transcript_59948.known	chr9	-	3999	21	FSM	ENSMUSG00000032582.15	ENSMUST00000035201.13	3999	21	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_19	75.7708882091269	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTAAAGTTTTTTTTT	7505	False	NA	NA	False	AATAAA	-22	NA	107750028	107650757	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107710632_107710707_107724466_107724537_107728113_107728204_107729323_107730874_107737547_107737659_107749847
transcript_59952.nnic	chr9	-	2215	17	NIC	ENSMUSG00000032582.15	novel	3716	21	NA	NA	-4	0	combination_of_known_splicesites	FALSE	canonical	3	80	junction_15	79.7133291473264	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAATTTTGTTAAAGTTTTT	7501	False	NA	NA	False	AATAAA	-18	NA	107750032	107650761	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107677897_107677973_107737547_107737659_107749847
transcript_59953.known	chr9	-	2066	16	FSM	ENSMUSG00000032582.15	ENSMUST00000181986.8	2066	16	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_14	99.8488635666704	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAATAAATTTTGTTAAAGT	7571	False	NA	NA	False	AATAAA	-14	NA	107749962	107650765	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107651007_107651790_107651921_107655128_107655227_107656772_107656848_107659808_107660064_107660888_107660985_107664450_107664598_107664977_107665064_107665306_107665389_107665528_107665572_107666806_107666905_107668203_107668365_107668950_107669218_107673675_107673737_107737547_107737659_107749847
transcript_59955.known	chr9	+	2042	6	FSM	ENSMUSG00000032583.8	ENSMUST00000035202.4	2042	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	6.62117814289874	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTTTGTCATTGGTTCTT	NA	False	NA	NA	False	ATTAAA	-22	NA	107765380	107780338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107765602_107775870_107776011_107777225_107777715_107778393_107779160_107779814_107779963_107780060
transcript_59957.known	chr9	+	3277	11	FSM	ENSMUSG00000032936.14	ENSMUST00000035700.14	3277	11	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_4	7.3729234364667	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTCTTGCCTTTGCTTCCT	NA	False	NA	18	True	AATAAA	-26	NA	107812872	107826890	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107813251_107822477_107822582_107822687_107822820_107822988_107823064_107823277_107823417_107823538_107823660_107823816_107823893_107823981_107824119_107824280_107824360_107824578_107824667_107824942
transcript_59958.known	chr9	+	3253	10	FSM	ENSMUSG00000032936.14	ENSMUST00000192318.2	3253	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_5	6.48264539813992	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCCTCTGGCCACCCTCT	NA	False	NA	4	True	AATAAA	-12	NA	107813096	107826876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107813251_107822477_107822582_107822687_107822820_107822988_107823417_107823538_107823660_107823816_107823893_107823981_107824119_107824280_107824360_107824578_107824667_107824942
transcript_59960.known	chr9	+	2706	15	FSM	ENSMUSG00000032586.10	ENSMUST00000049348.9	2706	15	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_7	39.1366001255571	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTTTGGCAGAGTATTT	NA	False	NA	4	True	NA	NA	NA	107828154	107849469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107838855_107839452_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
transcript_59964.nic	chr9	+	2576	14	NIC	ENSMUSG00000032586.10	novel	2706	15	NA	NA	-17	0	intron_retention	TRUE	canonical	3	271	junction_2	36.9687217865663	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTAGGCTCTGGCTGTATA	NA	False	NA	13	True	AATAAA	-14	NA	107828137	107848724	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_107828372_107833063_107833122_107833544_107833629_107836014_107836055_107836637_107836766_107838176_107838272_107838740_107839541_107840029_107840120_107840527_107840617_107845792_107845949_107847202_107847252_107847667_107847818_107847906_107847958_107848172
transcript_59971.known	chr9	+	4559	6	FSM	ENSMUSG00000032594.12	ENSMUST00000035214.11	4559	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	50.8700304698159	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTGTCCAAGTCTGTGTGA	6720	False	NA	17	True	AATAAA	-17	NA	107879699	107925981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107880022_107901301_107901650_107909197_107909409_107918103_107918286_107921923_107922100_107922661
transcript_59974.known	chr9	-	1025	2	FSM	ENSMUSG00000042106.6	ENSMUST00000048568.6	1025	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGCTGGTCCCATACTCCTG	9756	False	NA	NA	False	AATAAA	-17	NA	107863078	107861421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107862264_107862895
transcript_59975.known	chr9	+	1244	5	FSM	ENSMUSG00000032594.12	ENSMUST00000177158.2	1244	5	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	111.108899283541	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGGGCAGAACATTTGTCC	2379	False	NA	36	True	TATAAA	-6	NA	107909271	107923342	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107909409_107918103_107918286_107921923_107922100_107922444_107922513_107922661
transcript_59976.known	chr9	+	2262	18	FSM	ENSMUSG00000032591.16	ENSMUST00000035211.14	2262	18	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_13	9.09998288906715	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAGAGTGCTTCTTAGTTTC	6663	False	NA	18	True	CATAAA	-23	NA	107957634	107962202	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107957730_107958343_107958492_107958583_107958697_107958782_107958898_107958981_107959119_107959199_107959321_107959401_107959521_107959663_107959860_107960018_107960150_107960227_107960331_107960452_107960590_107960677_107960714_107960792_107960902_107961062_107961141_107961259_107961407_107961486_107961594_107961691_107961832_107961972
transcript_5998.known	chr10	+	2000	8	FSM	ENSMUSG00000071072.13	ENSMUST00000052798.14	2000	8	0	0	0	0	multi-exon	FALSE	canonical	3	2953	junction_7	394.34461257812	1226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGCAGTGTCACCTTGTTT	846	False	NA	39	True	AATAAA	-40	NA	127894822	127913141	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127907936_127908027_127910090_127910154_127911206_127911232_127911935
transcript_59984.nic	chr9	+	1652	10	NIC	ENSMUSG00000070284.11	novel	1429	10	NA	NA	-199	0	combination_of_known_junctions	FALSE	canonical	3	16	junction_1	34.1655374700484	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGACTGGAAGTCAAGC	NA	False	NA	29	True	NA	NA	NA	107926241	107928901	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_107926561_107926710_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
transcript_59986.known	chr9	+	1429	10	FSM	ENSMUSG00000070284.11	ENSMUST00000047947.9	1429	10	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	31.8309578326385	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGGACTGGAAGTCAAGC	NA	False	NA	29	True	NA	NA	NA	107926523	107928901	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107926620_107926710_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
transcript_59991.known	chr9	+	2702	9	FSM	ENSMUSG00000070284.11	ENSMUST00000112295.9	2702	9	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_7	12.9807549857472	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTATGGTAACTTGGGTCT	NA	False	NA	NA	False	NA	NA	NA	107926440	107930000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928176_107928258_107928442_107928524
transcript_59993.known	chr9	+	1853	8	FSM	ENSMUSG00000070284.11	ENSMUST00000137284.8	1853	8	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_6	10.1196918562428	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAAGCAGTCCTTGTTGTTC	NA	False	NA	10	True	NA	NA	NA	107926487	107929115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_107926845_107926959_107927041_107927127_107927177_107927313_107927457_107927649_107927809_107927892_107927972_107928047_107928442_107928524
transcript_59998.known	chr9	-	2518	22	FSM	ENSMUSG00000032590.15	ENSMUST00000193254.6	2518	22	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_21	23.0064567492301	111	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTCTGTGCTGGTACTT	NA	False	NA	-32	True	AATAAA	-14	NA	107971805	107962611	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_107962877_107962959_107963067_107963148_107963252_107963337_107963529_107963621_107963711_107964221_107964303_107964379_107964464_107964921_107965061_107965459_107965549_107966716_107966769_107967287_107967386_107968441_107968503_107968966_107969089_107969169_107969211_107969286_107969379_107969474_107969613_107969752_107969917_107970005_107970082_107970179_107970274_107970820_107970948_107971425_107971559_107971633
transcript_6.known	ERCC-00019	+	627	1	FSM	ERCC-00019A	DQ883651	627	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	20	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	627	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00019_+_0_600
transcript_600.known	chr1	+	1414	6	FSM	ENSMUSG00000026111.16	ENSMUST00000027285.13	1414	6	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_1	129.498416978741	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACTTCAGCAAGCGGTAT	NA	False	NA	NA	False	AATGAA	-44	NA	37469250	37478205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_37469575_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
transcript_6000.known	chr10	+	1559	7	FSM	ENSMUSG00000071072.13	ENSMUST00000084771.3	1559	7	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_4	1337.80347543609	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGTTGGAAGATTTCTTGG	903	False	NA	-1	True	TTTAAA	-22	NA	127894879	127912847	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127895156_127904540_127904655_127905084_127905155_127906002_127906102_127910090_127910154_127911206_127911232_127911935
transcript_60006.known	chr9	+	2133	6	FSM	ENSMUSG00000032606.8	ENSMUST00000035227.8	2133	6	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_5	4.63033476111609	85	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTGTCAGCTGCTTGT	NA	False	NA	14	True	NA	NA	NA	108167627	108173697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108167862_108170534_108170712_108171129_108171244_108171644_108171717_108172087_108172193_108172266
transcript_60011.known	chr9	+	2082	9	FSM	ENSMUSG00000032607.13	ENSMUST00000035230.7	2082	9	0	0	0	0	multi-exon	TRUE	canonical	3	166	junction_5	15.4029218007494	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATGGTCTCTAGCTTCCTTG	NA	False	NA	21	True	AATAAA	-22	NA	108174068	108179501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108174225_108174326_108174495_108174910_108174992_108175966_108176099_108176578_108176658_108176943_108177090_108177732_108177914_108178271_108178428_108178518
transcript_60018.known	chr9	+	2197	6	FSM	ENSMUSG00000007815.14	ENSMUST00000007959.14	2197	6	0	0	0	0	multi-exon	FALSE	canonical	3	1457	junction_4	47.4535562418666	907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCCTGTATTCTCTTGTGT	NA	False	NA	15	True	AATAAA	-15	NA	108183327	108215133	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108183753_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
transcript_60023.known	chr9	+	852	6	FSM	ENSMUSG00000007815.14	ENSMUST00000194701.6	852	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	597.472543302201	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAGTGAGAGAGGTTTTTGA	NA	False	NA	NA	False	NA	NA	NA	108183995	108213933	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108184276_108192506_108192582_108204782_108204941_108208069_108208191_108212249_108212381_108213846
transcript_60029.known	chr9	-	1094	3	FSM	ENSMUSG00000039461.13	ENSMUST00000192886.6	1094	3	0	0	0	0	multi-exon	TRUE	canonical	3	19	junction_2	5	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTCTGTTCTTTTTGAGGA	7115	False	NA	NA	False	NA	NA	NA	108183359	108180852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_108181453_108182524_108182580_108182920
transcript_60030.known	chr9	-	1668	3	FSM	ENSMUSG00000039461.13	ENSMUST00000044725.9	1668	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	14.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGTGGTGTGGTTATTCAA	7285	False	NA	-2	True	ATTAAA	-13	NA	108183189	108180156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_108181453_108182524_108182628_108182920
transcript_60031.known	chr9	+	787	2	FSM	ENSMUSG00000063856.9	ENSMUST00000191997.2	787	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAGATGGGCGCTGGTCCC	NA	False	NA	-75	True	NA	NA	NA	108216441	108217449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108216758_108216978
transcript_60034.known	chr9	+	3662	22	FSM	ENSMUSG00000032612.15	ENSMUST00000035237.12	3662	22	0	0	0	0	multi-exon	FALSE	canonical	3	580	junction_19	65.884562002066	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTTTCTCCACGTTAGCTT	NA	False	NA	64	True	CATAAA	-21	NA	108225051	108269744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108225218_108228108_108228237_108233609_108233741_108237293_108237421_108239759_108239906_108240035_108240098_108243028_108243170_108243959_108244078_108245017_108245192_108248099_108248259_108249760_108249986_108250805_108250890_108251422_108251518_108255634_108255827_108256463_108256553_108258526_108258752_108261283_108261355_108261595_108261715_108262005_108262156_108265475_108265580_108268178_108268268_108268877
transcript_60039.known	chr9	+	1101	4	FSM	ENSMUSG00000032611.10	ENSMUST00000035234.6	1101	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	2.62466929133727	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGGGTTTATTACCTGGG	5955	False	NA	NA	False	AATAAA	-20	NA	108270032	108274969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108270059_108270433_108270839_108272492_108272585_108274391
transcript_6004.known	chr10	+	1916	10	FSM	ENSMUSG00000025393.13	ENSMUST00000026459.6	1916	10	0	0	0	0	multi-exon	FALSE	canonical	3	8904	junction_3	854.417771581948	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTATGGGCCTTGTGTTTC	NA	False	NA	11	True	ATTAAA	-22	NA	127919141	127926260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127919323_127919760_127919944_127920165_127920341_127920959_127921082_127921310_127921496_127921906_127922066_127922166_127922290_127924189_127924403_127924825_127925028_127925887
transcript_60041.known	chr9	-	1897	6	FSM	ENSMUSG00000032609.13	ENSMUST00000035232.13	1897	6	0	0	0	0	multi-exon	TRUE	canonical	3	5	junction_5	2.71293199325011	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAAATAAAAATACTGCTCA	NA	False	NA	-28	True	NA	NA	NA	108329576	108324856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_108325685_108326024_108326127_108326265_108326491_108326819_108326985_108328074_108328591_108329515
transcript_60042.known	chr9	+	3092	2	FSM	ENSMUSG00000049305.7	ENSMUST00000061209.7	3092	2	0	0	0	0	multi-exon	FALSE	canonical	3	208	junction_1	0	110	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGCTGGAGAGATGGCTCAG	187	False	NA	NA	False	AATAAA	-13	NA	108337725	108343137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108337817_108340136
transcript_60045.known	chr9	+	4512	27	FSM	ENSMUSG00000006676.17	ENSMUST00000178075.8	4512	27	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_10	41.4654094097091	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTAGTGACTGATCCACAA	NA	False	NA	11	True	AATAAA	-15	NA	108368054	108379516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108368095_108369669_108369930_108370166_108370200_108370334_108370464_108370548_108370683_108370759_108371063_108371214_108371438_108371565_108371723_108371825_108371898_108372010_108372127_108372232_108372454_108372735_108372932_108373009_108373144_108373268_108373428_108373503_108373615_108374050_108374162_108374264_108374367_108375094_108375236_108375321_108375441_108375640_108375779_108375878_108376193_108376293_108376405_108376492_108376710_108376790_108376944_108377048_108377210_108377289_108377469_108379038
transcript_60048.known	chr9	+	2800	24	FSM	ENSMUSG00000032604.17	ENSMUST00000006838.16	2800	24	0	0	0	0	multi-exon	FALSE	canonical	3	468	junction_2	39.8133167299073	489	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTCTCTCTGTTGTCTGCCT	NA	False	NA	18	True	AATAAA	-21	NA	108384904	108393140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108385399_108385581_108385730_108386075_108386186_108386347_108386424_108386639_108386705_108387293_108387348_108387486_108387548_108388337_108388410_108388529_108388616_108388730_108388818_108389681_108389782_108389898_108389978_108390058_108390168_108390264_108390396_108390484_108390578_108390867_108391006_108391091_108391180_108391263_108391408_108391488_108391594_108391741_108391835_108391944_108392073_108392165_108392233_108392305_108392432_108392994
transcript_6005.known	chr10	+	478	3	FSM	ENSMUSG00000025393.13	ENSMUST00000126751.2	478	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5636	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTATGTCTGTTTATGTTGC	NA	False	NA	22	True	AATAAA	-15	NA	127924420	127926142	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_127924442_127924825_127925028_127925887
transcript_6006.nnic	chr10	+	2494	13	NNC	ENSMUSG00000040054.18	novel	3721	11	NA	NA	480	0	at_least_one_novel_splicesite	FALSE	canonical	3	275	junction_3	39.5561310039291	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AGAAAAGAAAGAAAAGGTAA	NA	False	NA	29	True	NA	NA	NA	127932728	127955194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_127932930_127944762_127944901_127946623_127947218_127948450_127948637_127949331_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423_127954525_127954823_127954890_127955138
transcript_60067.known	chr9	+	3040	10	FSM	ENSMUSG00000006673.15	ENSMUST00000112155.9	3040	10	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_1	89.886485340754	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCATGCGCTTTTTTTTTTTT	1170	False	NA	4	True	AGTAAA	-8	NA	108394308	108437191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108394440_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
transcript_60068.nic	chr9	+	3230	10	NIC	ENSMUSG00000006673.15	novel	3331	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	113	junction_1	173.205152034684	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCTACTGGAGAACGTGTC	1163	False	NA	64	True	NA	NA	NA	108394301	108437362	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_108394452_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061_108422177_108433160_108433270_108433606_108433759_108434156_108434248_108436444
transcript_60071.known	chr9	+	2291	6	FSM	ENSMUSG00000006673.15	ENSMUST00000193258.6	2291	6	0	0	0	0	multi-exon	FALSE	canonical	3	392	junction_1	95.7195904713346	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAATAAAAACTATCAAAA	1163	False	NA	NA	False	NA	NA	NA	108394301	108422519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108394440_108405787_108406118_108410785_108411818_108418886_108419065_108419630_108419786_108422061
transcript_60073.known	chr9	+	975	5	FSM	ENSMUSG00000006673.15	ENSMUST00000194385.2	975	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_2	249.488977712443	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGTTAGAGAACTGTGAG	1216	False	NA	NA	False	NA	NA	NA	108394354	108422288	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108394440_108405787_108406118_108418886_108419065_108419630_108419786_108422061
transcript_60074.nic	chr9	+	1765	15	NIC	ENSMUSG00000062867.14	novel	1858	14	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_9	848.284297862456	79	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAGTGACAACTGA	1140	False	NA	16	True	AATAAA	-9	NA	108437629	108442763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441111_108441184_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
transcript_60078.known	chr9	+	1858	14	FSM	ENSMUSG00000062867.14	ENSMUST00000081111.14	1858	14	0	0	0	0	multi-exon	TRUE	canonical	3	1280	junction_13	396.993628196225	3526	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTTGAGTTCAATGGGCAC	995	False	NA	36	True	AATAAA	-29	NA	108437484	108442783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108437831_108438232_108438282_108438795_108438898_108438981_108439057_108439372_108439580_108439990_108440079_108440334_108440535_108440619_108440711_108440794_108440891_108441833_108441978_108442064_108442210_108442300_108442445_108442525_108442610_108442696
transcript_6008.nnic	chr10	+	2317	11	NNC	ENSMUSG00000040054.18	novel	3721	11	NA	NA	480	-725	at_least_one_novel_splicesite	FALSE	canonical	3	275	junction_3	37.4364795353409	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGATGAGGCAGAAGGTCC	NA	False	NA	NA	False	GATAAA	-24	NA	127932728	127954469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_127932930_127944762_127944901_127946623_127947218_127948450_127948637_127949331_127949551_127950202_127950653_127950893_127950955_127951929_127952039_127952174_127952277_127952415_127952627_127954423
transcript_601.known	chr1	+	1179	6	FSM	ENSMUSG00000026111.16	ENSMUST00000118059.3	1179	6	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_1	196.480635178126	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGTGACTGTTTATTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	37469282	37478068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_37469509_37470373_37470658_37471631_37471753_37476242_37476383_37476457_37476560_37477762
transcript_60102.known	chr9	-	1487	5	FSM	ENSMUSG00000070283.5	ENSMUST00000074208.6	1487	5	0	0	0	0	multi-exon	FALSE	canonical	3	428	junction_3	47.1301389770919	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATACTGGATCTGTTTTCA	8143	False	NA	NA	False	NA	NA	NA	108444633	108442735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_108443275_108443357_108443459_108443539_108443607_108443754_108443951_108444049
transcript_60105.known	chr9	+	1746	12	FSM	ENSMUSG00000019039.15	ENSMUST00000019183.14	1746	12	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_8	26.2473926292634	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGAGTGAGGCGTGTTC	NA	False	NA	15	True	AATAAA	-17	NA	108447084	108449973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448373_108448644_108448719_108448811_108448874_108448980_108449064_108449139_108449317_108449385_108449497_108449591_108449661_108449749
transcript_60114.nic	chr9	+	1916	10	NIC	ENSMUSG00000019039.15	novel	1746	12	NA	NA	-26	0	intron_retention	FALSE	canonical	3	128	junction_6	18.4357409183867	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGAGAGTGAGGCGTGTT	NA	False	NA	14	True	AATAAA	-16	NA	108447058	108449972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_108447275_108447348_108447645_108447762_108448014_108448090_108448171_108448243_108448373_108448644_108448719_108448811_108448874_108448980_108449497_108449591_108449661_108449749
transcript_60118.known	chr9	-	4163	6	FSM	ENSMUSG00000066357.7	ENSMUST00000068700.7	4163	6	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_5	13.1969693490589	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTGTGCCTTACCATCTCC	5751	False	NA	-1	True	AATAAA	-20	NA	108455938	108449509	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_108450613_108450687_108450807_108450892_108451010_108451103_108451200_108451299_108453782_108455692
transcript_60119.known	chr9	-	1841	9	FSM	ENSMUSG00000006675.11	ENSMUST00000006853.11	1841	9	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_3	12.7273082385868	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCGCCCGCTTGGGGGAGGGG	NA	False	NA	2	True	AATAAA	-36	NA	108474866	108456060	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_108456508_108456914_108457039_108457214_108457306_108457917_108458104_108459040_108459204_108460045_108460143_108460840_108461032_108474097_108474180_108474406
transcript_60123.nic	chr9	-	4004	17	NIC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	155	junction_13	228.429112363114	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGAGTCTTTTTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	108526613	108480140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108506487_108506534_108521224_108521568_108522131_108522194_108526427
transcript_60124.nic	chr9	-	2260	17	NIC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	-28	0	combination_of_known_junctions	FALSE	canonical	3	155	junction_13	228.429112363114	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTCACCCTTTAGCTA	NA	False	NA	-24	True	AATAAA	-11	NA	108526613	108481884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108506487_108506534_108521224_108521568_108522131_108522194_108526427
transcript_60125.nnic	chr9	-	2330	17	NNC	ENSMUSG00000064145.13	novel	3924	16	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_16	264.803228832278	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTCACCCTTTAGCTA	NA	False	NA	-24	True	AATAAA	-11	NA	108526564	108481884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108523130_108523296_108526427
transcript_60127.known	chr9	-	3924	16	FSM	ENSMUSG00000064145.13	ENSMUST00000013338.14	3924	16	0	0	0	0	multi-exon	TRUE	canonical	3	517	junction_5	114.47891605978	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGGAGTCTTTTTTTC	NA	False	NA	NA	False	AATAAA	-20	NA	108526579	108480140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108526427
transcript_60130.nnic	chr9	-	2843	16	Fusion	ENSMUSG00000064145.13_ENSMUSG00002076266.1	novel	3924	16	NA	NA	-659	0	multi-exon	FALSE	canonical	3	34	junction_15	215.945013577274	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGCTTCACCCTTTAGCTA	NA	False	NA	-24	True	AATAAA	-11	NA	108531586	108481884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chr9_-_108482353_108482532_108482617_108484486_108484556_108485107_108485252_108485800_108485953_108486976_108486999_108487095_108487147_108488831_108488950_108490924_108491035_108492223_108492346_108493876_108494028_108494570_108494635_108497257_108497326_108521224_108521568_108522131_108522194_108530771
transcript_60133.known	chr9	+	1783	9	FSM	ENSMUSG00000032602.7	ENSMUST00000035222.6	1783	9	0	0	0	0	multi-exon	FALSE	canonical	3	619	junction_8	102.171118717571	281	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCATCGTGTGATATTTTCT	5077	False	NA	3	True	NA	NA	NA	108539296	108561840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108539532_108546964_108547058_108549617_108549746_108554782_108554874_108557285_108557404_108559170_108559244_108559545_108559656_108560247_108560373_108561030
transcript_60140.nic	chr9	+	1802	6	NIC	ENSMUSG00000032599.13	novel	1708	6	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	35.9243649909083	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACAGTGCTGCTGTCGTTC	NA	False	NA	14	True	AATACA	-18	NA	108660969	108683531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_108661070_108673262_108673596_108675469_108675693_108676440_108676617_108681740_108681917_108682737
transcript_60142.nnic	chr9	+	947	4	NIC	ENSMUSG00000032599.13	novel	730	4	NA	NA	-25	-4	combination_of_known_splicesites	FALSE	canonical	1	1	junction_3	53.6304225437598	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAAGGCTTGGCTCACCCA	NA	False	NA	4	True	AATAAA	-18	NA	108660969	108674887	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_108661070_108673262_108673596_108673739_108673772_108674405
transcript_60143.known	chr9	+	607	4	FSM	ENSMUSG00000032599.13	ENSMUST00000192226.6	607	4	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	30.6847772609735	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAAGTGTCGTCTCTCTCT	NA	False	NA	NA	False	NA	NA	NA	108661063	108674544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108661070_108673262_108673596_108673853_108673983_108674405
transcript_60147.known	chr9	+	776	3	FSM	ENSMUSG00000032599.13	ENSMUST00000195580.6	776	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	54.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCTGGGGAGGGGAGGAGT	NA	False	NA	NA	False	NA	NA	NA	108661063	108674176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108661070_108673262_108673596_108673739
transcript_60149.known	chr9	+	1191	3	FSM	ENSMUSG00000032599.13	ENSMUST00000192307.6	1191	3	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_2	47	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATGTGTCTTGTAGTTC	NA	False	NA	NA	False	AATAAA	-16	NA	108660994	108675188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108661070_108673262_108673596_108674405
transcript_60151.known	chr9	+	748	3	FSM	ENSMUSG00000032599.13	ENSMUST00000194875.6	748	3	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_2	53	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGCTTGGCTCACCCACCAT	NA	False	NA	8	True	AATAAA	-22	NA	108661063	108674891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108661070_108673262_108673596_108674482
transcript_60154.known	chr9	+	2820	2	FSM	ENSMUSG00000032599.13	ENSMUST00000193634.2	2820	2	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGCAAAAGTGTAAATTATGT	NA	False	NA	NA	False	NA	NA	NA	108661020	108676033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108661070_108673262
transcript_60157.known	chr9	+	2552	21	FSM	ENSMUSG00000023259.18	ENSMUST00000188557.8	2552	21	0	0	0	0	multi-exon	TRUE	canonical	3	10	junction_1	9.81121806912883	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTTGTCTGTCCAACTTC	NA	False	NA	-2	True	AATACA	-12	NA	108731333	108742096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108731386_108732975_108733142_108733221_108733362_108733530_108733642_108733874_108734024_108734139_108734305_108734390_108734544_108734864_108734948_108735023_108735172_108735395_108735510_108735629_108735708_108736022_108736119_108736199_108736307_108736485_108736556_108737801_108737895_108737996_108738102_108738496_108738590_108739280_108739458_108739626_108739682_108741477_108741615_108741836
transcript_60162.known	chr9	+	1653	13	FSM	ENSMUSG00000025651.15	ENSMUST00000026743.14	1653	13	0	0	0	0	multi-exon	FALSE	canonical	3	5755	junction_3	194.83802033142	4373	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGTCCTTCCTTAGA	NA	False	NA	18	True	AATAAA	-14	NA	108765700	108778691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108765856_108766083_108766225_108771151_108771239_108773111_108773242_108773757_108773957_108774427_108774508_108776005_108776122_108776403_108776548_108776665_108776827_108776923_108777010_108777612_108777702_108778006_108778083_108778502
transcript_60163.known	chr9	+	1834	6	FSM	ENSMUSG00000025647.17	ENSMUST00000026737.12	1834	6	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	42.9678949914934	174	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCCTTTCTTCAGCGCCT	NA	False	NA	18	True	AATAAA	-18	NA	108867652	108886792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108867833_108869937_108870095_108880434_108880522_108885045_108885162_108885354_108885574_108885717
transcript_60165.known	chr9	+	515	4	FSM	ENSMUSG00000025647.17	ENSMUST00000198591.5	515	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	122.37192851667	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGAACCTGCCCCCAGCC	NA	False	NA	NA	False	NA	NA	NA	108881921	108885770	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108882049_108885045_108885162_108885354_108885574_108885717
transcript_60166.known	chr9	+	1038	4	FSM	ENSMUSG00000025647.17	ENSMUST00000154184.5	1038	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_1	98.8005847935909	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTGTATAGAGGGCCACATG	NA	False	NA	NA	False	NA	NA	NA	108883930	108886275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108884076_108885045_108885162_108885354_108885574_108885717
transcript_60171.known	chr9	-	2572	13	FSM	ENSMUSG00000025646.10	ENSMUST00000045011.9	2572	13	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_2	14.834971819619	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTTTCCTGAGTCCGA	NA	False	NA	1	True	ATTAAA	-26	NA	108903192	108888814	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_108888977_108889330_108889581_108889696_108889778_108890177_108890270_108890599_108890737_108894195_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
transcript_60172.known	chr9	-	4248	13	FSM	ENSMUSG00000025646.10	ENSMUST00000160217.8	4248	13	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_5	38.4544282957835	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGCCGCCTCTGCTTC	NA	False	NA	1	True	AATAAA	-18	NA	108903139	108887000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_108888977_108889330_108889581_108889696_108889778_108890177_108890270_108890599_108890737_108894280_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
transcript_60175.nic	chr9	-	2751	8	ISM	ENSMUSG00000025646.10	ENSMUST00000045011.9	2572	13	-11	4491	-11	3227	5prime_fragment	FALSE	canonical	3	126	junction_6	12.2407816210354	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATAAGTTCCTAATTTGGG	NA	False	NA	NA	False	AAGAAA	-3	NA	108903203	108893305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_-_108894868_108895033_108895161_108896084_108896187_108896820_108896979_108898346_108898466_108900785_108900957_108901674_108901806_108902822
transcript_60177.known	chr9	-	1054	2	FSM	ENSMUSG00000049734.10	ENSMUST00000112053.2	1054	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTGACTGCTTGCCGCCTCT	NA	False	NA	-4	True	AATAAA	-13	NA	108888319	108887005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_108887997_108888256
transcript_60178.known	chr9	+	1526	4	FSM	ENSMUSG00000025645.9	ENSMUST00000026735.9	1526	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_1	5.71547606649408	119	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAGTTATATCAGACTCAG	NA	False	NA	14	True	ATTAAA	-28	NA	108911560	108921557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_108911636_108918404_108918716_108919908_108920074_108920582
transcript_6018.known	chr10	-	3302	14	FSM	ENSMUSG00000040043.18	ENSMUST00000099139.9	3302	14	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_13	100.648665396784	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACGTCATAAGTACACCTCCA	NA	False	NA	NA	False	NA	NA	NA	128016166	127967426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128015661_128015715_128015817
transcript_60180.known	chr9	-	944	4	FSM	ENSMUSG00000091537.3	ENSMUST00000167504.3	944	4	0	0	0	0	multi-exon	FALSE	canonical	3	4656	junction_3	487.196743284134	698	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATCGGGGTTGCCATGCTTG	NA	False	NA	NA	False	AATAAA	-21	NA	108911655	108906954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_108907494_108911069_108911158_108911238_108911295_108911394
transcript_60183.known	chr9	-	380	3	FSM	ENSMUSG00000091537.3	ENSMUST00000193868.2	380	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	2893	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAACTTTTGTAAAAAAA	NA	False	NA	NA	False	AATGAA	-30	NA	108911446	108907253	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_108907494_108911069_108911158_108911394
transcript_60191.known	chr9	+	1074	7	FSM	ENSMUSG00000032478.15	ENSMUST00000035053.12	1074	7	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	146.935359937627	189	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGTGCAAGCTTTCTCT	NA	False	NA	25	True	AATAAA	-32	NA	109661825	109672042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_109661876_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
transcript_60195.known	chr9	+	719	7	FSM	ENSMUSG00000032478.15	ENSMUST00000200005.5	719	7	0	0	0	0	multi-exon	FALSE	canonical	3	252	junction_1	126.972000413039	181	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCCCAGCTGCGGTGTGGT	NA	False	NA	NA	False	NA	NA	NA	109661816	109671597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_109661957_109662263_109662364_109664385_109664483_109668675_109668779_109670543_109670584_109670994_109671156_109671519
transcript_60204.known	chr9	+	930	6	FSM	ENSMUSG00000032478.15	ENSMUST00000198201.5	930	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	211.367547177896	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCCAGGCTGGCAGTACT	NA	False	NA	7	True	AATAAA	-14	NA	109661854	109672024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_109661876_109662263_109662364_109668675_109668779_109670543_109670584_109670994_109671156_109671519
transcript_60205.known	chr9	+	599	6	FSM	ENSMUSG00000032478.15	ENSMUST00000199758.5	599	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_4	239.071872038515	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAGCTGAAACAGGAGGCCAC	NA	False	NA	NA	False	NA	NA	NA	109661953	109671654	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_109661957_109662263_109662364_109664385_109664483_109668675_109668779_109670994_109671156_109671519
transcript_60206.known	chr9	+	715	6	FSM	ENSMUSG00000032478.15	ENSMUST00000200091.5	715	6	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_2	202.945707025303	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCAGTGTTCAGCCCTTCC	NA	False	NA	NA	False	AGTAAA	-15	NA	109661853	109671727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_109661957_109662263_109662364_109668675_109668779_109670543_109670584_109670994_109671156_109671519
transcript_6021.known	chr10	-	1481	13	FSM	ENSMUSG00000040043.18	ENSMUST00000092033.4	1481	13	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_9	21.4048281157936	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGCAGTGCTGTGAAGTC	NA	False	NA	NA	False	TTTAAA	-14	NA	128012348	127968975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_127969237_127969509_127969595_127969996_127970078_127970865_127970977_127973342_127973437_127973529_127973577_127973788_127973899_127973986_127974067_127979263_127979422_127981541_127981634_127982470_127982530_127987051_127987225_128012218
transcript_60215.known	chr9	+	3632	15	FSM	ENSMUSG00000032477.15	ENSMUST00000094324.8	3632	15	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_8	39.8577188898467	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTCTGCCTAGTTCCTAA	NA	False	NA	28	True	AATAAA	-18	NA	109704646	109722963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_109705228_109706228_109706303_109707335_109707379_109708298_109708336_109708901_109709004_109710540_109710646_109712556_109712683_109713186_109713262_109713410_109713579_109716315_109716415_109717941_109718005_109718099_109718199_109718778_109718910_109720812_109720925_109721146
transcript_60216.known	chr9	+	6091	19	FSM	ENSMUSG00000032479.16	ENSMUST00000035055.15	6091	19	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	32.471877671397	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGCTTCTGTCCTCTTAG	NA	False	NA	25	True	AATAAA	-25	NA	109760527	109913023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109861166_109861302_109863440_109864575_109865809_109865924_109892084_109892192_109893295_109893518_109896552_109896737_109897591_109897652_109897760_109898054_109900093_109900208_109901680_109901774_109907070_109907153_109908848_109908962_109910488_109910679_109910802
transcript_60222.nic	chr9	+	932	6	NIC	ENSMUSG00000032479.16	novel	6091	19	NA	NA	-20	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	120.044325147006	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAATCTGCTTTGGCTGGCT	NA	False	NA	NA	False	NA	NA	NA	109760847	109857189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_109761009_109807917_109808160_109828839_109828909_109855168_109855292_109856746_109856861_109856966
transcript_60224.known	chr9	+	3538	27	FSM	ENSMUSG00000032481.18	ENSMUST00000197984.5	3538	27	0	0	0	0	multi-exon	FALSE	canonical	3	1122	junction_24	83.6874645091864	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCATAGTTCCTGGCTGT	2502	False	NA	16	True	ATTAAA	-26	NA	109961104	110064359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279_110033395_110035066_110035222_110042576_110042712_110050959_110051225_110063944
transcript_60225.known	chr9	+	5717	28	FSM	ENSMUSG00000032481.18	ENSMUST00000088716.12	5717	28	0	0	0	0	multi-exon	FALSE	canonical	3	994	junction_27	99.253261289205	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCCATTCTCTGCATTCAT	2445	False	NA	24	True	AATAAA	-24	NA	109961047	110069246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869_109993946_109996672_109996799_110000013_110000136_110002948_110003074_110004109_110004170_110006535_110006574_110011989_110012112_110012884_110012957_110014890_110015005_110015825_110015980_110016947_110017062_110019970_110020031_110025220_110025480_110026696_110026859_110031570_110031627_110033279_110033395_110035066_110035222_110042576_110042712_110050959_110051225_110063944_110064122_110066886
transcript_60228.nic	chr9	+	1143	8	ISM	ENSMUSG00000032481.18	ENSMUST00000197480.5	1949	15	14	19138	14	18107	5prime_fragment	FALSE	canonical	3	1285	junction_2	51.7063924520766	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTGTCACTCTGGCTTA	2516	False	NA	NA	False	AATAAA	-19	NA	109961118	109994233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_109961377_109964636_109964757_109968616_109968703_109976112_109976195_109978998_109979092_109982840_109982911_109986343_109986414_109993869
transcript_60229.known	chr9	-	3968	23	FSM	ENSMUSG00000032480.18	ENSMUST00000198425.5	3968	23	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_20	140.114150629448	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGTCCTCCCAAGG	NA	False	NA	-1	True	AATAAA	-21	NA	109946490	109913387	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109938093_109938190_109942038_109942094_109944103_109944230_109944558_109944651_109946425
transcript_60230.known	chr9	-	3806	19	FSM	ENSMUSG00000032480.18	ENSMUST00000062368.13	3806	19	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_18	79.7176537599273	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCTGCTGTCCTCCCAAGG	NA	False	NA	-1	True	AATAAA	-21	NA	109930155	109913387	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_109913715_109913796_109913937_109914017_109914122_109914212_109914371_109914479_109914640_109914752_109914947_109915017_109915100_109915187_109915395_109915598_109915775_109915999_109916105_109916187_109916264_109916497_109917335_109917620_109917774_109920486_109920637_109921383_109921505_109921925_109922228_109926156_109926268_109927796_109927928_109929883
transcript_60231.known	chr9	-	1424	2	FSM	ENSMUSG00000032480.18	ENSMUST00000196788.2	1424	2	0	0	0	0	multi-exon	FALSE	canonical	3	279	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	109946442	109943243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_109944651_109946425
transcript_60232.known	chr9	+	2107	4	FSM	ENSMUSG00000032482.10	ENSMUST00000199736.2	2107	4	0	0	0	0	multi-exon	TRUE	canonical	3	35	junction_3	9.53356643071673	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCCTTAGTGCCGTGGCC	NA	False	NA	19	True	AATAAA	-20	NA	110075132	110091643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_110076459_110080026_110080216_110085212_110085289_110091127
transcript_60233.nnic	chr9	+	1365	8	NNC	ENSMUSG00000054836.13	novel	1304	7	NA	NA	-14	0	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_1	63.5539301760035	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTGGAGGTTGTCTTT	2199	False	NA	7	True	AATAAA	-17	NA	110134257	110150391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_110134418_110137258_110137337_110139162_110139242_110141636_110141708_110143043_110143163_110144818_110145021_110148637_110148785_110149882
transcript_60236.known	chr9	+	1304	7	FSM	ENSMUSG00000054836.13	ENSMUST00000199592.5	1304	7	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_6	18.4157239577729	98	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTGGAGGTTGTCTTT	2182	False	NA	7	True	AATAAA	-17	NA	110134240	110150391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_110134418_110139162_110139242_110141636_110141708_110143043_110143163_110144818_110145021_110148637_110148785_110149882
transcript_60239.nic	chr9	+	1332	7	NIC	ENSMUSG00000054836.13	novel	567	5	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	1	2	junction_1	57.0129127673918	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTCCTGGAGGTTGTCTTT	2474	False	NA	7	True	AATAAA	-17	NA	110134532	110150391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_110134738_110139162_110139242_110141636_110141708_110143043_110143163_110144818_110145021_110148637_110148785_110149882
transcript_60241.nic	chr9	+	794	5	ISM	ENSMUSG00000054836.13	ENSMUST00000199592.5	1304	7	23	5202	-8	247	5prime_fragment	FALSE	canonical	3	134	junction_1	15.6923548264752	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGACTGGCACCGTGGGA	2205	False	NA	NA	False	AATAAA	-16	NA	110134263	110145189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_110134418_110139162_110139242_110141636_110141708_110143043_110143163_110144818
transcript_60245.known	chr9	+	2713	21	FSM	ENSMUSG00000032489.18	ENSMUST00000084952.8	2713	21	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_7	1.113552872566	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATCTTCCTTATGTACA	854	False	NA	NA	False	GATAAA	-26	NA	110306061	110354247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_110306152_110312128_110312227_110314102_110314269_110317603_110317711_110318903_110319129_110323469_110323554_110323659_110323753_110324878_110325027_110325984_110326050_110330656_110330735_110335260_110335330_110335728_110335834_110338525_110338582_110339448_110339540_110340388_110340523_110343496_110343692_110346572_110346788_110348102_110348280_110348567_110348684_110350327_110350433_110353951
transcript_60246.nic	chr9	+	1001	2	ISM	ENSMUSG00000044791.17	ENSMUST00000197399.2	767	6	15151	-459	-276	0	3prime_fragment	FALSE	canonical	3	155	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGGAATGTGTGCTCCCTC	NA	False	NA	13	True	AATAAA	-14	NA	110446392	110447675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_110446604_110446885
transcript_60248.nic	chr9	-	1084	5	NIC	ENSMUSG00000032491.15	novel	1223	5	NA	NA	-8	0	combination_of_known_junctions	FALSE	canonical	2	9	junction_3	51.265851207212	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGGCTCCTTGGACC	8916	False	NA	-5	True	ATTAAA	-25	NA	110453528	110450202	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_110450806_110450907_110451051_110451139_110451183_110452154_110452304_110453382
transcript_6025.known	chr10	-	1583	2	FSM	ENSMUSG00000051346.10	ENSMUST00000061995.10	1583	2	0	0	0	0	multi-exon	FALSE	canonical	3	299	junction_1	0	86	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTCTGTCTATAAAATTGC	NA	False	NA	0	True	AATAAA	-41	NA	128047676	128045776	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128047261_128047577
transcript_60250.known	chr9	-	1223	5	FSM	ENSMUSG00000032491.15	ENSMUST00000035069.14	1223	5	0	0	0	0	multi-exon	TRUE	canonical	3	119	junction_3	3.96074487943871	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGGCTCCTTGGACC	8924	False	NA	-5	True	ATTAAA	-25	NA	110453520	110450202	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_110450806_110450907_110451051_110451139_110451330_110452154_110452304_110453382
transcript_60252.nic	chr9	-	2056	4	NIC	ENSMUSG00000032491.15	novel	1223	5	NA	NA	-8	0	intron_retention	FALSE	canonical	3	126	junction_2	1.88561808316413	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTACTTGGCTCCTTGGACC	8916	False	NA	-5	True	ATTAAA	-25	NA	110453528	110450202	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_110450806_110450907_110451051_110451139_110452304_110453382
transcript_60255.known	chr9	+	834	7	FSM	ENSMUSG00000019659.9	ENSMUST00000019803.9	834	7	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_3	22.4258035902098	598	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCCTAGTTGCTCTGGAT	8482	False	NA	29	True	AATAAA	-29	NA	110485570	110540674	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_110485727_110521383_110521452_110537513_110537594_110538961_110539024_110539194_110539230_110540153_110540231_110540318
transcript_60258.known	chr9	+	1150	1	FSM	ENSMUSG00000019659.9	ENSMUST00000198077.2	1150	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAACAAAAAAAAAAAAAAAA	8504	False	NA	NA	False	NA	NA	NA	110485592	110486742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_110485600_110486700
transcript_60259.known	chr9	+	937	7	FSM	ENSMUSG00000059741.14	ENSMUST00000079784.12	937	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	1.10554159678513	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCCTATCTCTCTTTCTCT	NA	False	NA	NA	False	AATAAA	-20	NA	110592713	110598866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_110592969_110595546_110595575_110595688_110595839_110596975_110597150_110598169_110598248_110598482_110598521_110598652
transcript_60262.known	chr9	+	1232	6	FSM	ENSMUSG00000047257.14	ENSMUST00000011391.12	1232	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	1.35646599662505	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGAGCTGTCTCTCTTCTCTT	1964	False	NA	NA	False	ATTAAA	-13	NA	110663655	110670378	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_110663808_110665133_110665161_110667488_110667637_110668089_110668365_110669454_110669619_110669912
transcript_60263.known	chr9	+	1208	5	FSM	ENSMUSG00000047257.14	ENSMUST00000146794.4	1208	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.6393596310755	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTCTCTCTTCTCTTTTT	1964	False	NA	NA	False	ATTAAA	-16	NA	110663655	110670381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_110663808_110667488_110667637_110668089_110668365_110669454_110669619_110669912
transcript_60265.known	chr9	+	1456	5	FSM	ENSMUSG00000048752.8	ENSMUST00000051097.6	1456	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_3	2.54950975679639	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTCCTCCTTTCTGAGCC	NA	False	NA	NA	False	ATTAAA	-16	NA	110687034	110693697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_110687528_110690327_110690491_110691329_110691614_110692797_110692965_110693348
transcript_60266.known	chr9	-	1290	7	FSM	ENSMUSG00000032494.13	ENSMUST00000197460.5	1290	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_4	2178.41216383759	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAGAGAGAAGAAAAACTAT	NA	False	NA	NA	False	NA	NA	NA	110775162	110769310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110771835_110771898_110772219_110772322_110773258_110773312_110774891
transcript_6027.known	chr10	+	1529	11	FSM	ENSMUSG00000044005.14	ENSMUST00000135441.2	1529	11	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_6	5.46351535185909	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTTTATTTTATATTTT	33	False	NA	13	True	AATAAA	-19	NA	128039632	128045811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128039725_128039943_128040003_128040529_128040597_128040729_128040781_128040956_128041134_128042740_128042873_128043166_128043260_128043429_128043492_128044459_128044537_128044974_128045039_128045156
transcript_60273.known	chr9	-	1932	6	FSM	ENSMUSG00000032494.13	ENSMUST00000035075.13	1932	6	0	0	0	0	multi-exon	FALSE	canonical	3	3873	junction_3	373.6995584691	1887	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGTAGTGCCTTATTTC	NA	False	NA	-15	True	AGTAAA	-21	NA	110775226	110768670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_110769888_110771396_110771507_110771597_110771713_110772219_110772322_110773258_110773312_110774891
transcript_6028.known	chr10	+	2144	4	FSM	ENSMUSG00000025389.8	ENSMUST00000026455.8	2144	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	1.24721912892465	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCATTTAAGACTTTGGAAT	364	False	NA	NA	False	AATAAA	-19	NA	128061706	128067681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128062111_128062916_128063082_128063501_128063583_128066187
transcript_60283.known	chr9	+	3657	9	FSM	ENSMUSG00000032495.9	ENSMUST00000035076.9	3657	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	105.561593394568	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTGTTCCACGTGTGTTC	NA	False	NA	8	True	AATAAA	-19	NA	110780612	110813134	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_110780745_110786867_110787015_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
transcript_60285.nnic	chr9	+	1851	9	NNC	ENSMUSG00000032495.9	novel	520	4	NA	NA	-679	-1831	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_1	94.0634759085587	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAGAAAATATTTCA	NA	False	NA	NA	False	NA	NA	NA	110782187	110811303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_110782345_110786867_110787015_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
transcript_60290.nic	chr9	+	1949	9	NIC	ENSMUSG00000032495.9	novel	666	5	NA	NA	-165	-1831	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	99.4054198723591	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAGAAAATATTTCA	NA	False	NA	NA	False	NA	NA	NA	110782701	110811303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_110782957_110786867_110787015_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
transcript_60295.nnic	chr9	+	1676	8	NNC	ENSMUSG00000032495.9	novel	520	4	NA	NA	-385	-1831	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	92.9191002091253	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAGAAAAAGAAAATATTTCA	NA	False	NA	NA	False	NA	NA	NA	110789516	110811303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_110789646_110789869_110790078_110791582_110791740_110795508_110795646_110799081_110799228_110808537_110808694_110809894_110810032_110810697
transcript_603.known	chr1	+	808	5	FSM	ENSMUSG00000026111.16	ENSMUST00000144617.8	808	5	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	199.60774033088	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTAAGTTTTGGTGGTTTGAG	NA	False	NA	NA	False	NA	NA	NA	37469257	37476559	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_37469419_37470373_37470658_37471631_37471753_37476242_37476383_37476457
transcript_6030.nnic	chr10	-	625	3	Antisense	novelGene_ENSMUSG00000039994.16_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	1	junction_2	8.5	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCCACATCCGGCTCTGCAG	NA	False	NA	NA	False	NA	NA	NA	128068166	128064989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr10_-_128065342_128066773_128066877_128067996
transcript_60306.known	chr9	+	1839	15	FSM	ENSMUSG00000032497.20	ENSMUST00000196981.5	1839	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	57.6262146270679	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGATTTGGATTTTGTTTGT	NA	False	NA	46	True	AATGAA	-18	NA	110947180	111053290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_110947458_110948707_110948780_110970257_110970401_110990370_110990458_111017829_111017875_111019235_111019353_111022114_111022187_111028732_111028904_111034822_111034916_111043208_111043342_111044996_111045047_111048749_111048871_111051225_111051306_111052333_111052439_111053017
transcript_60307.known	chr9	+	3191	14	FSM	ENSMUSG00000032497.20	ENSMUST00000098340.7	3191	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	68.9842619904487	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTGCATCCTGTGGTCTG	NA	False	NA	16	True	GATAAA	-21	NA	110947202	111054736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_110947458_110948707_110948780_110970257_110970401_110990370_110990458_111017829_111017875_111019235_111019353_111028732_111028904_111034822_111034916_111043208_111043342_111044996_111045047_111048749_111048871_111051225_111051306_111052333_111052439_111053017
transcript_60311.known	chr9	-	2754	19	FSM	ENSMUSG00000032498.10	ENSMUST00000035079.10	2754	19	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	91.190277259512	133	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGATTTTTTTTTTTTATA	NA	False	NA	-27	True	AATAAA	-15	NA	111100859	111057322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_111057695_111058907_111059022_111059310_111059404_111059968_111060134_111062390_111062455_111064974_111065084_111068790_111068940_111070292_111070676_111076317_111076472_111078287_111078382_111081931_111082045_111084695_111084785_111085160_111085204_111086467_111086560_111087556_111087630_111090546_111090621_111093934_111094034_111097285_111097377_111100476
transcript_6032.known	chr10	+	4341	29	FSM	ENSMUSG00000039994.16	ENSMUST00000105244.8	4341	29	0	0	0	0	multi-exon	FALSE	canonical	3	180	junction_28	54.1443059549842	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGAGGAAAGAGTCATATAGC	6615	False	NA	-69	True	NA	NA	NA	128067957	128088721	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528_128080699_128081954_128082081_128082177_128082330_128083021_128083120_128083208_128083327_128083444_128083647_128084230_128084377_128085215_128085302_128085389_128085511_128085596_128085680_128085836_128085980_128086153_128086332_128086414_128086484_128086562_128086682_128087538_128087753_128087861_128087958_128088063
transcript_60322.known	chr9	+	3005	5	FSM	ENSMUSG00000032500.11	ENSMUST00000111879.5	3005	5	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	10.8483869768736	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGCCTTGTTCAATGGT	NA	False	NA	NA	False	AATAAA	-20	NA	111268148	111318186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_111268421_111296545_111298384_111311685_111311819_111313984_111314153_111317592
transcript_60324.nnic	chr9	+	1043	3	NNC	ENSMUSG00000032500.11	novel	3005	5	NA	NA	44464	0	at_least_one_novel_splicesite	FALSE	canonical	3	3	junction_1	15	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGCCTTGTTCAATGGT	498	False	NA	NA	False	AATAAA	-20	NA	111312612	111318186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_111312894_111313984_111314153_111317592
transcript_60326.nnic	chr9	+	808	2	NNC	ENSMUSG00000032500.11	novel	3005	5	NA	NA	47906	0	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATCTGCCTTGTTCAATGGT	3940	False	NA	NA	False	AATAAA	-20	NA	111316054	111318186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_111316269_111317592
transcript_60327.nnic	chr9	+	1202	2	NNC	ENSMUSG00000032500.11	novel	3005	5	NA	NA	48003	491	at_least_one_novel_splicesite	FALSE	canonical	2	22	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGGATGGGGTGTGTCATT	4037	False	NA	NA	False	NA	NA	NA	111316151	111318677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_111316269_111317592
transcript_60329.known	chr9	-	5951	18	FSM	ENSMUSG00000032504.16	ENSMUST00000035086.13	5951	18	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_2	35.4147936949624	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGTGGAGTATGAATTC	NA	False	NA	-9	True	AATAAA	-17	NA	113537327	113480811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_113484176_113485084_113485276_113486153_113486278_113488898_113488994_113490013_113490149_113491336_113491586_113500824_113500995_113501770_113501883_113503392_113503571_113507373_113507498_113509020_113509244_113514374_113514492_113516692_113516794_113518642_113518797_113520520_113520649_113526573_113526644_113529036_113529092_113536966
transcript_6033.nic	chr10	+	1771	13	ISM	ENSMUSG00000039994.16	ENSMUST00000105244.8	4341	29	-39	8023	-15	899	5prime_fragment	FALSE	canonical	3	289	junction_8	43.2845879679541	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTACAGGGCAGCCCCAAGGT	6576	False	NA	18	True	NA	NA	NA	128067918	128080698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_128068045_128075702_128075867_128076006_128076161_128076248_128076364_128076458_128076522_128077143_128077246_128077452_128077609_128078178_128078313_128078499_128078588_128079063_128079241_128079938_128080157_128080306_128080411_128080528
transcript_60330.known	chr9	-	3223	18	FSM	ENSMUSG00000032504.16	ENSMUST00000111861.4	3223	18	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_12	92.4204698786755	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCATTGTTATGTTTTGTCA	NA	False	NA	-8	True	AATAAA	-17	NA	113537312	113483539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_113484176_113485084_113485276_113486153_113486278_113488898_113488994_113490013_113490149_113491336_113491586_113500824_113500995_113501770_113501883_113503392_113503571_113507373_113507498_113509020_113509244_113514374_113514507_113516692_113516794_113518642_113518797_113520520_113520649_113526573_113526644_113529036_113529092_113536966
transcript_60331.known	chr9	-	3464	15	FSM	ENSMUSG00000032507.16	ENSMUST00000035090.14	3464	15	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_13	8.10139821643304	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTACCCATTGAAGTAGTCT	NA	False	NA	NA	False	AATAAA	-17	NA	113855829	113805774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_113808009_113808525_113808739_113813052_113813110_113813608_113813654_113814340_113814402_113815473_113815605_113818187_113818263_113818377_113818505_113819685_113819782_113819876_113819946_113829565_113829661_113832217_113832293_113832509_113832565_113847056_113847119_113855760
transcript_60332.nic	chr9	-	2197	15	NIC	ENSMUSG00000032507.16	novel	2257	16	NA	NA	-13	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_14	11.0628999408853	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATGCATGTAGAATGGATG	NA	False	NA	-12	True	AGTAAA	-11	NA	113875272	113807104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_113808009_113808525_113808739_113813052_113813110_113813608_113813654_113814340_113814402_113815473_113815605_113818187_113818263_113818377_113818505_113819685_113819782_113819876_113819946_113829565_113829661_113832217_113832293_113832509_113832565_113847056_113847119_113875140
transcript_60335.known	chr9	-	1674	7	FSM	ENSMUSG00000032431.7	ENSMUST00000084881.5	1674	7	0	0	0	0	multi-exon	FALSE	canonical	3	526	junction_5	47.5280618862864	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTCTCTCCGTCCTTCCAG	NA	False	NA	NA	False	GATAAA	-20	NA	114219743	114204201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_114204651_114207107_114207192_114208977_114209124_114210653_114210783_114213763_114213936_114215269_114215420_114219199
transcript_60339.known	chr9	+	2396	16	FSM	ENSMUSG00000045594.11	ENSMUST00000063042.11	2396	16	0	0	0	0	multi-exon	FALSE	canonical	3	295	junction_2	39.3725228497687	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGGGTCCTGTCATTAA	NA	False	NA	24	True	AATAAA	-15	NA	114230143	114303445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_114230338_114246028_114246199_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
transcript_60344.nic	chr9	+	2224	15	NIC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	112	junction_1	76.8975265651421	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGGGTCCTGTCATTAA	NA	False	NA	24	True	AATAAA	-15	NA	114230145	114303445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_114230338_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
transcript_60345.known	chr9	+	2806	15	FSM	ENSMUSG00000045594.11	ENSMUST00000217583.2	2806	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	120.91639884732	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAGTGTTAACG	NA	False	NA	NA	False	NA	NA	NA	114230175	114303966	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_114230338_114249420_114249572_114250756_114250818_114253012_114253108_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272281_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
transcript_60348.nnic	chr9	+	1927	12	NIC	ENSMUSG00000045594.11	novel	2396	16	NA	NA	-8	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	110.549342036909	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGGGTCCTGTCATTAA	NA	False	NA	24	True	AATAAA	-15	NA	114230135	114303445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_114230338_114259380_114259562_114263468_114263528_114266806_114266929_114267008_114267050_114272076_114272190_114279664_114279740_114283255_114283346_114285498_114285616_114288661_114288794_114293111_114293367_114302905
transcript_60354.known	chr9	+	2921	2	FSM	ENSMUSG00000079260.4	ENSMUST00000111820.4	2921	2	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAGGAAAACAAAAGGAGC	NA	False	NA	NA	False	NA	NA	NA	114230172	114236344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_114230338_114233588
transcript_60357.known	chr9	-	2853	20	FSM	ENSMUSG00000056167.9	ENSMUST00000070117.8	2853	20	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_5	120.736887991548	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGATATGTTGCATGGTG	NA	False	NA	NA	False	NA	NA	NA	114469142	114414945	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114426862_114426899_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
transcript_6036.nnic	chr10	+	1617	4	NNC	ENSMUSG00000047631.5	novel	1258	2	NA	NA	-5380	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	4.18993502999218	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCCACAGTATTTATCATTCA	1565	False	NA	NA	False	ATTAAA	-16	NA	128098485	128106022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_128098581_128104009_128104295_128104560_128104639_128104863
transcript_60361.nnic	chr9	-	2738	19	NIC	ENSMUSG00000056167.9	novel	2853	20	NA	NA	-34	-135	combination_of_known_splicesites	FALSE	canonical	3	267	junction_4	76.1876338755546	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGTTGTTGTTGGTTTGTG	NA	False	NA	-12	True	TATAAA	-18	NA	114469286	114415168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_114415408_114420583_114420761_114422504_114422581_114426546_114426675_114427772_114427904_114430409_114430524_114439712_114439794_114442691_114442869_114444056_114444179_114446859_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
transcript_60365.known	chr9	-	1723	10	FSM	ENSMUSG00000056167.9	ENSMUST00000216785.2	1723	10	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_3	40.9103204703612	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGGAATCTAAGACCTCA	NA	False	NA	NA	False	NA	NA	NA	114469252	114446595	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_114447063_114448290_114448441_114451912_114452031_114454887_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
transcript_60366.known	chr9	-	1441	7	FSM	ENSMUSG00000056167.9	ENSMUST00000213539.2	1441	7	0	0	0	0	multi-exon	FALSE	canonical	3	475	junction_4	26.6817665582072	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTGTGCAGTTTACTGCT	NA	False	NA	NA	False	AATAAA	-18	NA	114469153	114454335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_114454972_114455464_114455552_114456460_114456604_114458074_114458226_114460889_114461052_114461744_114461840_114468986
transcript_60369.known	chr9	+	2601	13	FSM	ENSMUSG00000032435.10	ENSMUST00000047404.7	2601	13	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_8	45.3210767744986	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTCAGGGTCAAATAACGTG	2126	False	NA	3	True	AATAAA	-16	NA	114517857	114553370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_114518096_114518276_114518351_114534121_114534239_114535074_114535306_114538212_114538383_114542577_114542672_114544161_114544298_114544667_114544780_114546930_114546991_114548925_114548971_114549616_114549738_114550772_114550926_114552320
transcript_6037.known	chr10	-	1360	4	FSM	ENSMUSG00000025383.3	ENSMUST00000026449.3	1360	4	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_1	5.73488351136175	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTGGGTCTAAATTTCTAA	NA	False	NA	NA	False	NA	NA	NA	128133953	128132007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128132845_128132946_128133094_128133358_128133461_128133679
transcript_60370.known	chr9	+	3383	4	FSM	ENSMUSG00000032434.10	ENSMUST00000035007.10	3383	4	0	0	0	0	multi-exon	FALSE	canonical	3	606	junction_3	12.8322510366134	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTTTGTGCCTTCACAGTT	NA	False	NA	19	True	AATAAA	-15	NA	114560240	114578412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_114560442_114566250_114566428_114569126_114569226_114575506
transcript_60376.known	chr9	-	993	5	FSM	ENSMUSG00000032436.18	ENSMUST00000035009.16	993	5	0	0	0	0	multi-exon	FALSE	canonical	3	1122	junction_1	123.353911571543	747	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTTTCCTTATTGCATGAGA	NA	False	NA	-14	True	AATAAA	-16	NA	114610917	114585903	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_114586360_114587872_114587955_114590974_114591074_114592286_114592461_114610735
transcript_6038.known	chr10	+	4379	26	FSM	ENSMUSG00000005682.10	ENSMUST00000218315.2	4379	26	0	0	0	0	multi-exon	FALSE	canonical	2	164	junction_12	40.3480061465248	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGCTAGTGTGGGATTCTTT	NA	False	NA	15	True	AATAAA	-24	NA	128139242	128157222	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128139341_128139963_128140363_128143933_128144104_128144204_128144326_128144472_128144551_128144905_128145174_128146039_128146383_128146572_128146670_128148746_128148864_128149009_128149130_128149483_128149613_128149710_128149911_128150051_128150186_128150316_128150424_128150594_128150694_128150791_128150863_128150966_128151106_128151382_128151527_128151644_128151705_128152299_128152391_128153502_128153661_128153758_128153903_128154031_128154212_128154813_128154908_128156116_128156315_128156602
transcript_60384.known	chr9	-	874	4	FSM	ENSMUSG00000032436.18	ENSMUST00000084867.9	874	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	609.72343457232	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGTTTCCTTATTGCATG	NA	False	NA	-17	True	AATAAA	-13	NA	114610900	114585906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_114586360_114587872_114587955_114592286_114592461_114610735
transcript_60385.known	chr9	-	665	2	FSM	ENSMUSG00000032436.18	ENSMUST00000216760.2	665	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGCTGCAGGCCTGGGG	NA	False	NA	NA	False	NA	NA	NA	114610910	114599788	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_114600279_114610735
transcript_60386.known	chr9	-	1064	4	FSM	ENSMUSG00000041012.5	ENSMUST00000047013.4	1064	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	0.816496580927726	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAACGTGTGGAGTTTGTA	NA	False	NA	NA	False	AATAAA	-13	NA	114673220	114618412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_114618814_114619705_114619823_114625108_114625283_114672848
transcript_60387.known	chr9	+	2158	12	FSM	ENSMUSG00000040875.13	ENSMUST00000182384.8	2158	12	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	20.7380354832004	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCCGTTGGTATTTGTTGAA	NA	False	NA	8	True	ATTAAA	-18	NA	114819815	115061293	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_114819891_114890900_114891077_114896313_114896394_114938467_114938660_114996149_114996361_115004995_115005151_115036581_115036732_115045616_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
transcript_60394.nic	chr9	+	1156	5	ISM	ENSMUSG00000040875.13	ENSMUST00000046627.6	1872	10	149231	0	95971	0	3prime_fragment	FALSE	canonical	3	73	junction_2	2.54950975679639	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCCGTTGGTATTTGTTG	6046	False	NA	6	True	ATTAAA	-16	NA	115045577	115061291	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
transcript_60395.nic	chr9	+	2206	5	ISM	ENSMUSG00000040875.13	ENSMUST00000046627.6	1872	10	149231	-1050	95971	1048	3prime_fragment	FALSE	canonical	3	73	junction_2	2.54950975679639	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTGTGTCTTGTGTTATT	6046	False	NA	NA	False	ATTAAA	-3	NA	115045577	115062341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_115046098_115052660_115052848_115055748_115055932_115058927_115059082_115061179
transcript_60396.known	chr9	-	374	1	FSM	ENSMUSG00000050621.8	ENSMUST00000053150.8	374	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7675	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAACTTATCCCTTGGCCAGG	7274	False	NA	NA	False	NA	NA	NA	114811807	114811433	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_114811400_114811800
transcript_60397.known	chr9	-	472	1	FSM	ENSMUSG00000080848.4	ENSMUST00000117563.2	472	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3084	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGTGTGGTAGAGCAGAGTT	NA	False	NA	-63	True	NA	NA	NA	115870132	115869660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_115869700_115870100
transcript_60398.known	chr9	+	3396	8	FSM	ENSMUSG00000039285.13	ENSMUST00000044454.12	3396	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	57.0105611411838	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGCTGTATTTTGTGATTCA	9585	False	NA	4	True	AATATA	-18	NA	117869566	117892907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_117870027_117876480_117876702_117878377_117878504_117878964_117879065_117880421_117880571_117884883_117884979_117888124_117888244_117890781
transcript_60402.nic	chr9	+	1290	5	ISM	ENSMUSG00000039285.13	ENSMUST00000134433.8	2499	7	-86	8754	-6	71	5prime_fragment	FALSE	canonical	3	140	junction_4	16.3783393541592	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTGGGTTGTGTCTTAATT	9579	False	NA	NA	False	AATATA	-26	NA	117869560	117880798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_117870027_117876480_117876702_117878377_117878504_117878964_117879065_117880421
transcript_60404.known	chr9	-	1169	4	FSM	ENSMUSG00000039163.11	ENSMUST00000044220.11	1169	4	0	0	0	0	multi-exon	TRUE	canonical	3	173	junction_1	9.03081145609604	149	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGGAAGGCAAGATTTAAC	NA	False	NA	NA	False	ATTAAA	-17	NA	117979245	117893589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_117894417_117904189_117904281_117944407_117944498_117979084
transcript_60406.known	chr9	+	4461	11	FSM	ENSMUSG00000038708.11	ENSMUST00000211840.2	4461	11	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_10	60.3685348505329	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATAGTGTTCATTGTGCTT	NA	False	NA	7	True	AATAAA	-15	NA	118385847	118411587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_118388852_118389369_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118408609_118408675_118410916
transcript_60407.known	chr9	+	7583	24	FSM	ENSMUSG00000038708.11	ENSMUST00000084820.6	7583	24	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_12	49.6666772391441	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAATAGTGTTCATTGTGCTT	NA	False	NA	7	True	AATAAA	-15	NA	118335334	118411587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_118335626_118343247_118343338_118351585_118351652_118356077_118356390_118359341_118359390_118361611_118361669_118363674_118363774_118364409_118364543_118365826_118366012_118366309_118366394_118367944_118368093_118377690_118377870_118380899_118381032_118382502_118382659_118384640_118388852_118389369_118389492_118389809_118389941_118394624_118394736_118396026_118396048_118396248_118396318_118398031_118398108_118401985_118402090_118406209_118406297_118410916
transcript_60408.known	chr9	+	2909	20	FSM	ENSMUSG00000038775.15	ENSMUST00000051386.13	2909	20	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_1	8.09945109456443	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGGATTTATCTTGTGAT	4707	False	NA	NA	False	NA	NA	NA	118881845	118900587	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_118881897_118886850_118886923_118887072_118887148_118887378_118887585_118889412_118889522_118890544_118890656_118890962_118891163_118891509_118891589_118891673_118891773_118892315_118892452_118892669_118892771_118894526_118894665_118894927_118895087_118895768_118895949_118896478_118896625_118897379_118897525_118898950_118899137_118899345_118899418_118899624_118899883_118900201
transcript_6041.known	chr10	+	3410	2	FSM	ENSMUSG00000005682.10	ENSMUST00000219801.2	3410	2	0	0	0	0	multi-exon	FALSE	canonical	3	271	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	128139244	128143277	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128139341_128139963
transcript_60410.nic	chr9	+	1459	9	NIC	ENSMUSG00000038775.15	novel	1645	11	NA	NA	-14	0	combination_of_known_junctions	FALSE	canonical	3	4	junction_6	9.33993442161132	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCGGGTGTGGCACGTGTGCC	NA	False	NA	3	True	AATAAA	-16	NA	118892501	118900394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_118892670_118894526_118894665_118894927_118895087_118895768_118895949_118896478_118896625_118897379_118897525_118899345_118899418_118899624_118899883_118900201
transcript_60411.known	chr9	-	2706	15	FSM	ENSMUSG00000010660.4	ENSMUST00000214470.2	2706	15	0	0	0	0	multi-exon	TRUE	canonical	3	27	junction_4	6.31163486696415	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTCTAGTCTCTTTACAA	8079	False	NA	NA	False	TATAAA	-25	NA	118917329	118900594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_118900956_118901090_118901241_118901317_118901451_118901542_118901722_118902523_118902641_118902830_118902991_118903232_118903392_118903477_118903628_118903703_118903849_118903940_118904143_118904831_118905064_118905151_118905282_118909989_118910219_118913657_118913823_118917135
transcript_60412.known	chr9	-	2657	15	FSM	ENSMUSG00000010660.4	ENSMUST00000010804.4	2657	15	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_14	9.15540433686184	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTCTAGTCTCTTTACAA	2838	False	NA	NA	False	TATAAA	-25	NA	118922570	118900594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_118900956_118901090_118901241_118901317_118901451_118901542_118901722_118902523_118902641_118902830_118902991_118903232_118903392_118903477_118903628_118903703_118903849_118903940_118904143_118904831_118905064_118905151_118905282_118909989_118910219_118913657_118913823_118922425
transcript_60413.known	chr9	-	1689	12	FSM	ENSMUSG00000010651.5	ENSMUST00000010795.5	1689	12	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_6	59.9400526973023	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGGGTCCAGCTCTTGCT	NA	False	NA	NA	False	AGTAAA	-35	NA	118986161	118977090	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_118977482_118977801_118977948_118978029_118978086_118978338_118978519_118978667_118978859_118979891_118979973_118980883_118980983_118982737_118982781_118982993_118983074_118984812_118984871_118985658_118985753_118985891
transcript_60417.nnic	chr9	-	1359	7	NNC	ENSMUSG00000092212.4	novel	1458	6	NA	NA	7894	0	at_least_one_novel_splicesite	TRUE	canonical	3	7	junction_2	1.89296944860009	10	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGTTGTACTGTCTACT	NA	False	NA	NA	False	NA	NA	NA	119052864	119049553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_-_119049990_119050186_119050403_119051512_119051622_119051804_119052020_119052238_119052334_119052418_119052540_119052697
transcript_60419.known	chr9	-	1960	6	FSM	ENSMUSG00000032508.9	ENSMUST00000035092.7	1960	6	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_3	6.61513416341649	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTGACTGACGGTATGTG	NA	False	NA	1	True	AATAAA	-26	NA	119169107	119164999	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_119165966_119166400_119166577_119166819_119166912_119167071_119167253_119167641_119167777_119168697
transcript_6042.known	chr10	+	1383	6	FSM	ENSMUSG00000025381.4	ENSMUST00000219037.2	1383	6	0	0	0	0	multi-exon	FALSE	canonical	3	1395	junction_2	667.271938567778	1141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTATTTATTCAGTGTGTAC	NA	False	NA	NA	False	NA	NA	NA	128158327	128163422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128158645_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
transcript_60420.known	chr9	+	1762	12	FSM	ENSMUSG00000036138.17	ENSMUST00000039784.12	1762	12	0	0	0	0	multi-exon	TRUE	canonical	3	245	junction_2	23.8777880116768	195	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTGCTTGTCATTTCCTTCA	7728	False	NA	28	True	AGTAAA	-19	NA	119170359	119179365	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_119170752_119170890_119170985_119171788_119171847_119173238_119173319_119173531_119173575_119175535_119175635_119176795_119176877_119177646_119177838_119177986_119178167_119178419_119178476_119178557_119178704_119179023
transcript_60421.known	chr9	+	3383	19	FSM	ENSMUSG00000035769.10	ENSMUST00000039610.10	3383	19	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	12.9909750249458	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAACACCTAAAATCCACCT	NA	False	NA	11	True	AATAAA	-11	NA	119186446	119222386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_119186774_119188297_119188381_119190179_119190250_119193562_119193644_119196554_119196642_119197137_119197267_119198685_119198752_119200981_119201055_119203365_119203485_119207309_119207392_119209051_119209093_119209649_119209766_119210567_119210684_119211319_119211394_119212402_119212500_119215384_119215444_119217746_119217835_119219495_119219591_119220806
transcript_60422.known	chr9	+	3134	18	FSM	ENSMUSG00000035769.10	ENSMUST00000215822.2	3134	18	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_2	17.3265002945415	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAATCCACCTCTCCTTGCT	NA	False	NA	20	True	AATAAA	-20	NA	119186634	119222395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_119186774_119188297_119188381_119193562_119193644_119196554_119196642_119197137_119197267_119198685_119198752_119200981_119201055_119203365_119203485_119207309_119207392_119209051_119209093_119209649_119209766_119210567_119210684_119211319_119211394_119212402_119212500_119215384_119215444_119217746_119217835_119219495_119219591_119220806
transcript_60423.known	chr9	+	3175	11	FSM	ENSMUSG00000061393.15	ENSMUST00000215746.2	3175	11	0	0	0	0	multi-exon	TRUE	canonical	3	128	junction_3	23.1622537763491	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AGAAAAAGAAAAAAAAAGTT	NA	False	NA	NA	False	AAGAAA	-4	NA	119231509	119264061	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_119231664_119256520_119256729_119257032_119257143_119257266_119257419_119257490_119257635_119258930_119259075_119259285_119259435_119260289_119260405_119261554_119261694_119261778_119261910_119262332
transcript_60426.nnic	chr9	+	2689	8	NIC	ENSMUSG00000042787.16	novel	2624	7	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	31	junction_2	21.0092302358283	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGCCTGACTGCATATTT	NA	False	NA	NA	False	AAAAAG	-4	NA	119274022	119293305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_119274217_119274352_119274388_119274753_119274868_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
transcript_60427.known	chr9	+	2571	7	FSM	ENSMUSG00000042787.16	ENSMUST00000164213.5	2571	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	23.8706002345051	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCACGCCTGACTGCATATT	NA	False	NA	NA	False	AAAAAG	-3	NA	119274025	119293304	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_119274217_119274352_119274388_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
transcript_60429.known	chr9	+	2624	7	FSM	ENSMUSG00000042787.16	ENSMUST00000214462.2	2624	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	29.590257405662	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCACGCCTGACTGCATATTT	NA	False	NA	NA	False	AAAAAG	-4	NA	119274052	119293305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_119274217_119274753_119274868_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
transcript_6043.known	chr10	+	763	6	FSM	ENSMUSG00000025381.4	ENSMUST00000026446.4	763	6	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	1015.96602305392	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAACTGTGTTGTCTTTTTT	NA	False	NA	33	True	AATGAA	-29	NA	128158336	128163056	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128158400_128159198_128159312_128159452_128159569_128161932_128162137_128162445_128162543_128162886
transcript_60431.known	chr9	+	3832	6	FSM	ENSMUSG00000042787.16	ENSMUST00000035094.14	3832	6	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	23.8109218637162	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCGGTGATTGGCCACAGTG	NA	False	NA	NA	False	NA	NA	NA	119274008	119294583	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_119274217_119276014_119276165_119277454_119277595_119278843_119278921_119281293_119281409_119291441
transcript_60433.known	chr9	+	3845	19	FSM	ENSMUSG00000032512.8	ENSMUST00000036561.8	3845	19	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_17	23.7904950415284	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCAGTGTGCTGGACATGT	NA	False	NA	29	True	AATAAA	-17	NA	119723943	119755652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_119724024_119731351_119731493_119733343_119733423_119734268_119734352_119734433_119734564_119736193_119736283_119736751_119736854_119738416_119738642_119740089_119740165_119741432_119741536_119742693_119742792_119745791_119745900_119746176_119746274_119747527_119747624_119748714_119748821_119749622_119749711_119751683_119751761_119753143_119753334_119753774
transcript_60438.known	chr9	-	3906	9	FSM	ENSMUSG00000032513.9	ENSMUST00000035099.9	3906	9	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_5	11.0898320546346	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACAACTTGTTTTTTTTT	NA	False	NA	NA	False	ATTAAA	-19	NA	119766631	119754322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_119757103_119757292_119757446_119757878_119758030_119758616_119758828_119759038_119759170_119759285_119759373_119761686_119761891_119762327_119762409_119766523
transcript_60442.nnic	chr9	-	2645	7	NIC	ENSMUSG00000032513.9	novel	3906	9	NA	NA	-10	-1331	intron_retention	FALSE	canonical	0	0	junction_2	45.4520504365742	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTTTGTAACTAAAGCTTT	NA	False	NA	0	True	AATAAA	-19	NA	119766641	119755653	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_-_119757103_119757292_119757446_119758616_119759170_119759285_119759373_119761686_119761891_119762327_119762409_119766523
transcript_60445.known	chr9	+	961	8	FSM	ENSMUSG00000032519.12	ENSMUST00000144768.8	961	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_4	67.8187861517887	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCGTGGCTTCTTTCATGGC	1810	False	NA	NA	False	NA	NA	NA	119939489	119952717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_119939639_119945567_119945690_119946518_119946604_119948948_119949022_119949322_119949503_119949738_119949914_119951159_119951327_119952707
transcript_60446.nic	chr9	+	1755	8	NIC	ENSMUSG00000032519.12	novel	961	8	NA	NA	-20	-179	combination_of_known_junctions	FALSE	canonical	3	13	junction_3	64.126469430592	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATCACCAGGGTGGAGAC	1740	False	NA	5	True	AATAAA	-30	NA	119939419	119953391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_119939639_119945567_119945690_119946518_119946604_119948948_119949072_119949322_119949503_119949738_119949914_119951159_119951327_119952707
transcript_60450.nic	chr9	+	2006	7	NIC	ENSMUSG00000032519.12	novel	961	8	NA	NA	-20	-179	intron_retention	FALSE	canonical	3	13	junction_3	53.5184288093571	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATCACCAGGGTGGAGAC	1740	False	NA	5	True	AATAAA	-30	NA	119939419	119953391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr9_+_119939639_119945567_119945690_119946518_119946604_119948948_119949503_119949738_119949914_119951159_119951327_119952707
transcript_60451.known	chr9	+	1791	7	FSM	ENSMUSG00000032519.12	ENSMUST00000035106.12	1791	7	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_3	17.3173002771474	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGAGCACTCTGATTGACA	1760	False	NA	NA	False	ATTAAA	-16	NA	119939439	119953570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_119939639_119945567_119945690_119946518_119946604_119949322_119949503_119949738_119949914_119951159_119951327_119952707
transcript_60453.known	chr9	+	1599	6	FSM	ENSMUSG00000032518.7	ENSMUST00000217317.2	1599	6	0	0	0	0	multi-exon	FALSE	canonical	3	2998	junction_2	1090.74407630755	768	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956909	119960625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
transcript_60454.known	chr9	+	1938	7	FSM	ENSMUSG00000032518.7	ENSMUST00000035105.7	1938	7	0	0	0	0	multi-exon	FALSE	canonical	3	2998	junction_3	1065.2190176464	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCCCATACTCACCAGGGG	NA	False	NA	NA	False	ATTAAA	-26	NA	119956754	119961435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959183_119959430_119959833_119959963_119960065_119960232_119960465
transcript_60455.known	chr9	+	1101	7	FSM	ENSMUSG00000032518.7	ENSMUST00000217356.2	1101	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	1986.85748524313	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTATGGTCCTCACTGCAG	NA	False	NA	5	True	AATAAA	-15	NA	119956854	119960625	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_119956897_119957522_119957689_119958223_119958343_119959110_119959430_119959833_119959963_119960065_119960232_119960465
transcript_60457.known	chr9	+	2609	6	FSM	ENSMUSG00000032517.17	ENSMUST00000174193.8	2609	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_4	5.38144961882948	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAGCTGTTCTTCATACAT	NA	False	NA	NA	False	AGTAAA	-26	NA	119978807	120010550	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_119978864_119983752_119983832_119996866_119997077_120002216_120002442_120008392_120008472_120008590
transcript_60460.known	chr9	+	1536	4	FSM	ENSMUSG00000032517.17	ENSMUST00000068698.15	1536	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	2.44948974278318	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTTGGTGGTGACTTCCTC	NA	False	NA	NA	False	NA	NA	NA	119978772	119998444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_119978864_119983752_119983832_119996866_119997077_119997288
transcript_60461.known	chr9	+	1035	4	FSM	ENSMUSG00000006941.6	ENSMUST00000007139.6	1035	4	0	0	0	0	multi-exon	FALSE	canonical	3	407	junction_2	26.9608770051883	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCAGCAATGCACTTTGTTT	NA	False	NA	34	True	AATAAA	-36	NA	120321556	120324396	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_120321908_120323172_120323337_120323600_120323703_120323978
transcript_60462.known	chr9	+	3453	11	FSM	ENSMUSG00000041608.9	ENSMUST00000047687.9	3453	11	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_7	3.21869538788622	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTCAAGTATCTTAATTTTAC	NA	False	NA	NA	False	AATAAA	-15	NA	120368883	120397393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_120368950_120369717_120369770_120373024_120373153_120383134_120383253_120384710_120384862_120386457_120386618_120387401_120387636_120389546_120389820_120389986_120390098_120390964_120391103_120395371
transcript_60467.known	chr9	+	1009	6	FSM	ENSMUSG00000025794.10	ENSMUST00000165532.3	1009	6	0	0	0	0	multi-exon	FALSE	canonical	3	10044	junction_1	2651.61525112525	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGAACCATAGTCGAGTATAA	NA	False	NA	26	True	AATAAA	-35	NA	120400509	120403720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_120400608_120401161_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
transcript_60478.known	chr9	+	1271	5	FSM	ENSMUSG00000025794.10	ENSMUST00000213310.2	1271	5	0	0	0	0	multi-exon	FALSE	canonical	3	14823	junction_3	1143.83114466253	217	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATCTCATGTGTGGACTCT	NA	False	NA	16	True	AATAAA	-20	NA	120400579	120403498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_120401264_120401833_120401929_120402641_120402742_120402829_120402884_120403160
transcript_60479.known	chr9	+	736	1	FSM	ENSMUSG00000111533.2	ENSMUST00000214671.2	736	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTTGTCAACCATCATTC	NA	False	NA	NA	False	NA	NA	NA	120504601	120505337	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_120504600_120505300
transcript_60480.known	chr9	-	790	2	FSM	ENSMUSG00000111831.2	ENSMUST00000215385.2	790	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTATCTCATCGGCTTCTGT	NA	False	NA	NA	False	NA	NA	NA	120580209	120572655	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_120572855_120579618
transcript_60483.known	chr9	+	3623	15	FSM	ENSMUSG00000006932.18	ENSMUST00000007130.15	3623	15	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	74.0160283248135	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTCATTTTGTTTGTT	NA	False	NA	27	True	ATTAAA	-16	NA	120762465	120789573	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_120762705_120779238_120779300_120779587_120779816_120779959_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879_120785039_120786172_120786293_120786582_120786734_120786824_120786947_120787657_120787719_120788374
transcript_60484.known	chr9	+	1292	1	FSM	ENSMUSG00000006932.18	ENSMUST00000215573.2	1292	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	852	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTCATTTTGTTTGTT	NA	False	NA	27	True	ATTAAA	-16	NA	120788281	120789573	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_120788300_120789600
transcript_60485.known	chr9	+	2359	10	FSM	ENSMUSG00000006932.18	ENSMUST00000154687.8	2359	10	0	0	0	0	multi-exon	FALSE	canonical	3	499	junction_2	40.2559711083529	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAGAAATCAA	NA	False	NA	NA	False	NA	NA	NA	120762551	120785513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_120762705_120779238_120779300_120779587_120779816_120779959_120780214_120780332_120780572_120780651_120780854_120781924_120782070_120784213_120784318_120784394_120784734_120784879
transcript_60486.known	chr9	+	577	3	FSM	ENSMUSG00000032526.12	ENSMUST00000035113.11	577	3	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_1	21	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCAGTGTCCCATGTCAACT	NA	False	NA	11	True	AATAAA	-16	NA	121539394	121541987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_121539538_121539704_121539782_121541630
transcript_60488.known	chr9	+	479	3	FSM	ENSMUSG00000032526.12	ENSMUST00000215833.2	479	3	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_2	185.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGATACACGTCCGTCCTC	NA	False	NA	-6	True	NA	NA	NA	121539437	121541970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_121539538_121539704_121539782_121541668
transcript_60490.known	chr9	+	7022	17	FSM	ENSMUSG00000032525.16	ENSMUST00000035112.13	7022	17	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	11.4065496535981	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTTGGTCTTTCTTTGCT	NA	False	NA	9	True	AATACA	-19	NA	121548241	121585909	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_121548362_121548524_121548612_121556381_121556457_121557643_121557752_121558701_121558747_121560543_121560632_121570187_121570218_121570663_121570810_121571630_121571854_121573054_121573211_121574966_121575055_121575510_121575657_121577096_121579953_121580732_121580829_121581472_121581530_121582056_121582159_121583310
transcript_60491.known	chr9	-	605	5	FSM	ENSMUSG00000038412.9	ENSMUST00000215300.2	605	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	1102.00691921603	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACACGGTATTGAATATTG	NA	False	NA	-25	True	AATAAA	-20	NA	121686628	121678603	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_121678756_121679253_121679389_121681556_121681676_121685503_121685652_121686577
transcript_60494.known	chr9	-	2232	4	FSM	ENSMUSG00000038412.9	ENSMUST00000060251.8	2232	4	0	0	0	0	multi-exon	FALSE	canonical	3	2040	junction_3	82.3825763671475	985	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCAGATGTCTTGTTTTT	NA	False	NA	-3	True	ATTAAA	-13	NA	121687428	121677628	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_121678756_121679253_121679389_121681556_121681676_121686577
transcript_60495.known	chr9	-	1980	3	FSM	ENSMUSG00000038412.9	ENSMUST00000215007.2	1980	3	0	0	0	0	multi-exon	FALSE	canonical	3	2040	junction_2	90	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATCAGATGTCTTGTTTTT	NA	False	NA	-3	True	ATTAAA	-13	NA	121686678	121677628	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_121679389_121681556_121681676_121686577
transcript_60497.known	chr9	+	1530	1	FSM	ENSMUSG00000111079.2	ENSMUST00000217491.2	1530	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTGGCAGCTTTGTGTC	NA	False	NA	NA	False	AATAAA	-17	NA	121686745	121688275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_121686700_121688300
transcript_60499.known	chr9	+	1900	5	FSM	ENSMUSG00000043773.6	ENSMUST00000214777.2	1900	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	4.81534007106456	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGCTTCTTGTCATGATGT	6258	False	NA	NA	False	NA	NA	NA	121766288	121776082	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_121766386_121767041_121767229_121768484_121768568_121769749_121769877_121774676
transcript_60500.known	chr9	+	456	4	FSM	ENSMUSG00000043773.6	ENSMUST00000215356.2	456	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	3.2659863237109	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCAGGTGCTTGTGTCCTTTT	7151	False	NA	NA	False	ATTAAA	-23	NA	121767181	121771063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_121767229_121768484_121768568_121769749_121769877_121770864
transcript_60501.known	chr9	-	2365	2	FSM	ENSMUSG00000066235.8	ENSMUST00000084743.7	2365	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCAAGTCTTTTTCTGATGC	NA	False	NA	-3	True	ATTAAA	-18	NA	121825091	121810674	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_121812890_121824941
transcript_60502.known	chr9	-	2653	13	FSM	ENSMUSG00000037949.9	ENSMUST00000042546.4	2653	13	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	6.44797556515911	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGCAAATGTTTCAAGCTG	NA	False	NA	3	True	ATTAAA	-37	NA	122123489	122004939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_122005545_122030836_122030954_122080212_122080342_122082001_122082194_122086121_122086305_122087982_122088058_122088600_122088657_122090149_122090720_122092735_122092856_122100264_122100400_122101432_122101631_122104576_122104730_122123369
transcript_60504.known	chr9	+	3157	7	FSM	ENSMUSG00000032540.17	ENSMUST00000156520.8	3157	7	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_5	12.9925192151313	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGGGTGAGCTGTGTGT	NA	False	NA	4	True	AATAAA	-17	NA	122180672	122210589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_122180905_122194200_122194287_122196953_122197327_122204970_122205126_122206923_122207036_122207886_122208074_122208577
transcript_60508.known	chr9	+	2576	5	FSM	ENSMUSG00000032540.17	ENSMUST00000111497.5	2576	5	0	0	0	0	multi-exon	FALSE	canonical	2	13	junction_1	33.7073804974519	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCCGTGGGTGAGCTGTGTGT	NA	False	NA	4	True	AATAAA	-17	NA	122180794	122210589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_122180905_122204970_122205126_122206923_122207036_122207886_122208074_122208577
transcript_60511.known	chr9	+	3049	11	FSM	ENSMUSG00000046603.17	ENSMUST00000052740.14	3049	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	5.03984126734166	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCGTTCCAGGATTTCCA	NA	False	NA	22	True	AATAAA	-22	NA	122634603	122665399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_122634754_122637831_122637902_122640822_122640959_122643496_122643654_122647838_122648092_122653527_122653651_122655257_122655356_122655911_122656004_122660684_122660924_122662590_122662723_122663800
transcript_60512.known	chr9	+	2909	11	FSM	ENSMUSG00000046603.17	ENSMUST00000136274.3	2909	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	5.03984126734166	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACACAGCTGCGTTCCAGG	NA	False	NA	15	True	AATAAA	-15	NA	122634660	122665392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_122634754_122637831_122637902_122640822_122640959_122643496_122643654_122647914_122648092_122653527_122653651_122655257_122655356_122655911_122656004_122660684_122660924_122662590_122662723_122663800
transcript_60516.known	chr9	+	2010	4	FSM	ENSMUSG00000057895.12	ENSMUST00000051667.14	2010	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	7.71722460186015	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTTTGTTTTAACTGTAT	4874	False	NA	11	True	AATAAA	-22	NA	122752136	122760093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_122752284_122754072_122754362_122755374_122755520_122758664
transcript_60517.known	chr9	-	3361	3	FSM	ENSMUSG00000032551.8	ENSMUST00000035154.4	3361	3	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_2	10	76	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAGGAAAAG	NA	False	NA	NA	False	NA	NA	NA	122780065	122774153	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_122777174_122777989_122778135_122779869
transcript_60519.known	chr9	+	4858	35	FSM	ENSMUSG00000036768.7	ENSMUST00000040717.7	4858	35	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_12	27.7337969778696	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGTGTATAAATACTATGCCT	NA	False	NA	8	True	AATAAA	-18	NA	122780110	122847798	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_122780218_122788181_122788225_122788871_122789056_122792544_122792622_122795013_122795052_122800753_122800852_122804713_122804894_122806904_122807115_122808534_122808661_122808804_122808928_122813864_122813989_122815209_122815287_122815506_122815717_122816910_122817089_122820150_122820293_122820925_122821068_122822907_122823106_122824780_122824889_122825355_122825462_122826846_122827013_122828239_122828391_122828579_122828666_122830109_122830180_122831099_122831187_122832634_122832740_122833635_122833759_122836378_122836526_122838381_122838484_122838824_122838990_122840592_122840703_122843004_122843078_122843533_122843572_122846309_122846476_122846651_122846784_122847132
transcript_60522.known	chr9	+	882	1	FSM	ENSMUSG00000036768.7	ENSMUST00000216730.2	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	11	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	AAAAAG	-39	NA	122780146	122781028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_122780100_122781000
transcript_60523.known	chr9	+	1057	6	FSM	ENSMUSG00000036768.7	ENSMUST00000215176.2	1057	6	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_5	25.0391693152948	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AATTTAAAAAAAAAAAATCT	NA	False	NA	NA	False	NA	NA	NA	122780159	122801410	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_122780218_122788181_122788225_122788871_122789056_122792544_122792622_122795013_122795052_122800753
transcript_60524.known	chr9	-	2492	8	FSM	ENSMUSG00000025786.18	ENSMUST00000026892.15	2492	8	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	109.785505158273	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGCTCTGCTCTCTCCC	8738	False	NA	-1	True	AATAAA	-16	NA	122942245	122905896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_122907387_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122927987_122928040_122929327_122929658_122942060
transcript_60525.known	chr9	-	6987	7	FSM	ENSMUSG00000025786.18	ENSMUST00000147563.9	6987	7	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_1	22.8454955443445	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAATACAAATCATTTAAGTG	8713	False	NA	NA	False	NA	NA	NA	122942270	122901374	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_122907387_122909415_122909547_122912609_122912692_122913278_122913376_122918096_122918222_122929327_122929658_122942060
transcript_60526.known	chr9	+	1041	3	FSM	ENSMUSG00000066233.7	ENSMUST00000084733.7	1041	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	1.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTACTGGATATGGAATTTG	NA	False	NA	NA	False	AATAAA	-16	NA	122850390	122852552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_122850636_122851230_122851378_122851903
transcript_60532.known	chr9	+	1053	8	FSM	ENSMUSG00000025785.6	ENSMUST00000026891.5	1053	8	0	0	0	0	multi-exon	FALSE	canonical	3	1140	junction_3	103.377058995362	847	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGTGTTGTTAGCATCTCC	NA	False	NA	15	True	AATAAA	-20	NA	122942279	122965194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_122942388_122947955_122948058_122948305_122948401_122956870_122957037_122959588_122959660_122959891_122960016_122960949_122961106_122964963
transcript_60538.nic	chr9	+	2079	14	ISM	ENSMUSG00000035202.9	ENSMUST00000038863.9	3894	21	-7	20947	-7	-19876	5prime_fragment	FALSE	canonical	3	28	junction_9	7.36776924642996	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTAGAGGCCATTGTAG	NA	False	NA	NA	False	AATAAA	-17	NA	123195984	123270782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_123196173_123200919_123201169_123206765_123206895_123221847_123221940_123224015_123224077_123238678_123238769_123240937_123241082_123247243_123247352_123247699_123247860_123256511_123256617_123260950_123261067_123265181_123265466_123267199_123267299_123270528
transcript_60540.nic	chr9	+	1026	5	ISM	ENSMUSG00000035202.9	ENSMUST00000038863.9	3894	21	-7	67346	-7	0	5prime_fragment	FALSE	canonical	3	41	junction_4	7.58287544405155	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGCTGGTCCTTTAGGTGA	NA	False	NA	NA	False	AATAAA	-23	NA	123195984	123224383	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr9_+_123196173_123200919_123201169_123206765_123206895_123221847_123221940_123224015
transcript_60541.known	chr9	+	3433	20	FSM	ENSMUSG00000025240.11	ENSMUST00000238984.2	3433	20	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_14	24.7475900502736	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCGCTGTTGGTACTGTTT	NA	False	NA	17	True	AATAAA	-18	NA	123358946	123421663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_+_123358987_123371408_123371507_123376048_123376124_123377926_123378055_123381732_123381883_123388289_123388350_123389630_123389665_123395455_123395558_123397988_123398075_123399013_123399101_123399561_123399631_123406041_123406122_123408013_123408113_123411312_123411452_123414151_123414222_123414349_123414423_123415408_123415503_123415626_123415720_123416609_123416668_123419865
transcript_60547.known	chr9	-	4070	10	FSM	ENSMUSG00000025245.15	ENSMUST00000026274.14	4070	10	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_9	8.45905169363301	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGGAAGGAAGGAAAGGGAA	NA	False	NA	NA	False	NA	NA	NA	123546690	123526076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_123529169_123529934_123530039_123531189_123531367_123536973_123537052_123537137_123537204_123538618_123538691_123540100_123540162_123541494_123541690_123544364_123544490_123546590
transcript_60548.known	chr9	-	2732	11	FSM	ENSMUSG00000036814.14	ENSMUST00000040960.13	2732	11	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	0.830662386291808	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACTGAGAGTTCTTCCTGT	NA	False	NA	NA	False	AATAAA	-19	NA	123507950	123465186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_123466211_123466857_123467024_123469632_123469793_123470774_123470980_123484067_123484231_123485285_123485528_123486466_123486578_123489459_123489688_123492013_123492106_123493617_123493759_123507750
transcript_60549.known	chr9	-	1179	4	FSM	ENSMUSG00000025241.17	ENSMUST00000183700.2	1179	4	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	6.48074069840786	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TCAAAAAAAAAAAAAAAAAT	9323	False	NA	NA	False	NA	NA	NA	123680951	123667246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_123668063_123669606_123669714_123672523_123672674_123680845
transcript_60550.known	chr9	-	461	4	FSM	ENSMUSG00000110834.2	ENSMUST00000214845.2	461	4	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	43.70608907489	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAAAATCCCTATGAGTACT	NA	False	NA	NA	False	NA	NA	NA	124044769	124032987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_124033196_124033755_124033817_124033999_124034127_124044704
transcript_60551.known	chr9	-	2623	4	FSM	ENSMUSG00000074829.11	ENSMUST00000177714.8	2623	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	8.73053390247253	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATACTATTATCATGTTTTG	NA	False	NA	NA	False	AATAAA	-23	NA	124075326	124054433	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_124056732_124057727_124057789_124057987_124058115_124075189
transcript_60552.known	chr9	-	1179	3	FSM	ENSMUSG00000074829.11	ENSMUST00000186041.2	1179	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGGCTTTGGGAGCTCTGTC	NA	False	NA	NA	False	NA	NA	NA	124075301	124063349	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr9_-_124064354_124067285_124067349_124075189
transcript_60555.nnic	chr9	+	1246	10	NNC	ENSMUSG00000093803.6	novel	385	3	NA	NA	-302	1097	at_least_one_novel_splicesite	TRUE	canonical	1	4	junction_1	57.5924377751879	17	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGGGTGCACAGTCAGG	NA	False	NA	20	True	AATAAA	-21	NA	124197626	124202493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_124197753_124198703_124198779_124199151_124199239_124199674_124199832_124200091_124200141_124200416_124200507_124200880_124201057_124201276_124201396_124201794_124201908_124202239
transcript_60556.nnic	chr9	+	1175	8	NNC	ENSMUSG00000093803.6	novel	385	3	NA	NA	-1059	1097	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_1	58.6118327539372	22	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGGGGTGCACAGTCAGG	NA	False	NA	20	True	AATAAA	-21	NA	124199357	124202493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr9_+_124199575_124199674_124199832_124200091_124200141_124200416_124200507_124200880_124201057_124201276_124201396_124201794_124201908_124202239
transcript_60557.nnic	chr9	-	962	2	Antisense	novelGene_ENSMUSG00000093803.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	TRUE	canonical	3	70	junction_1	0	15	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTGGCCCGGGCGCAGGC	NA	False	NA	NA	False	NA	NA	NA	124198186	124195473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr9_-_124196190_124197940
transcript_60559.nnic	chr9	-	739	2	Antisense	novelGene_ENSMUSG00000093803.6_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	3	70	junction_1	0	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCGCGGGGAGTGATGGCGT	NA	False	NA	-3	True	AATAAA	-13	NA	124198186	124195696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr9_-_124196190_124197940
transcript_60561.known	chrM	+	955	1	FSM	ENSMUSG00000064337.1	ENSMUST00000082388.1	955	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATAGTGTAGCTTAATATTA	-3	True	NA	-47	True	NA	NA	NA	69	1024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrM_+_100_1000
transcript_60562.known	chrM	+	1582	1	FSM	ENSMUSG00000064339.1	ENSMUST00000082390.1	1582	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTAGGGTGGCAGAGCCAGG	-3	True	NA	34	True	AATAAA	-35	NA	1093	2675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrM_+_1100_2700
transcript_60563.known	chrM	+	957	1	FSM	ENSMUSG00000064341.1	ENSMUST00000082392.1	957	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	227	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAATATGTCTGATAAAAGAA	-2	True	NA	-17	True	NA	NA	NA	2750	3707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrM_+_2800_3700
transcript_60564.known	chrM	+	1038	1	FSM	ENSMUSG00000064345.1	ENSMUST00000082396.1	1038	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	56	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTTTAGGATATACTAGTC	-3	True	NA	-27	True	NA	NA	NA	3913	4951	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrM_+_3900_5000
transcript_60565.known	chrM	+	1545	1	FSM	ENSMUSG00000064351.1	ENSMUST00000082402.1	1545	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGGAAGGAATCGAACCC	1	True	NA	NA	False	AGTAAA	-5	NA	5327	6872	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrM_+_5300_6900
transcript_60566.known	chrM	+	684	1	FSM	ENSMUSG00000064354.1	ENSMUST00000082405.1	684	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	143	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCACTATGAAGCTAAGAG	-1	True	NA	NA	False	ACTAAA	-35	NA	7012	7696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrM_+_7000_7700
transcript_60567.known	chrM	+	681	1	FSM	ENSMUSG00000064357.1	ENSMUST00000082408.1	681	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	80	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGACCCACCAAACTCATGCA	150	False	NA	NA	False	AATACA	-4	NA	7926	8607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrM_+_7900_8600
transcript_60568.known	chrM	+	784	1	FSM	ENSMUSG00000064358.1	ENSMUST00000082409.1	784	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	86	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTCCCTTAGTATAATTAAT	-2	True	NA	NA	False	NA	NA	NA	8606	9390	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrM_+_8600_9400
transcript_60569.known	chrM	+	348	1	FSM	ENSMUSG00000064360.1	ENSMUST00000082411.1	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGGTAATTAGTTTAAAAAA	-2	True	NA	NA	False	AAAAAG	-21	NA	9458	9806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrM_+_9500_9800
transcript_60570.known	chrM	+	1378	1	FSM	ENSMUSG00000064363.1	ENSMUST00000082414.1	1378	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	74	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGAATATAGTTTACAAAAA	69	False	NA	13	True	NA	NA	NA	10166	11544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrM_+_10200_11500
transcript_60571.known	chrM	+	1144	1	FSM	ENSMUSG00000064370.1	ENSMUST00000082421.1	1144	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	234	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTGATAGTATAAACATT	-2	True	NA	12	True	ACTAAA	-12	NA	14144	15288	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrM_+_14100_15300
transcript_60572.known	chrX	+	3036	2	FSM	ENSMUSG00000073295.5	ENSMUST00000103007.4	3036	2	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGCAATAAGATCCTGAA	NA	False	NA	NA	False	AATAAA	-14	NA	5959506	5967164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_5960459_5965080
transcript_60574.known	chrX	-	1838	2	FSM	ENSMUSG00000073294.5	ENSMUST00000101698.4	1838	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTTTGTTGTGGTACAA	NA	False	NA	1	True	AATAAA	-24	NA	5995473	5993272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_5994830_5995192
transcript_60575.known	chrX	-	2201	1	FSM	ENSMUSG00000073294.5	ENSMUST00000117544.2	2201	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTCTTTGTTGTGGTACAA	NA	False	NA	1	True	AATAAA	-24	NA	5995473	5993272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_5993300_5995500
transcript_60576.known	chrX	-	1775	2	FSM	ENSMUSG00000073293.5	ENSMUST00000103006.4	1775	2	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGGAGTCCTTATAATTA	NA	False	NA	8	True	NA	NA	NA	6085069	6080749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_6081851_6084395
transcript_60577.known	chrX	-	8390	12	FSM	ENSMUSG00000004317.15	ENSMUST00000004428.14	8390	12	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_11	7.74596669241483	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAGTCTGTTTCTGAAGA	NA	False	NA	0	True	AATAAA	-22	NA	7054953	7020048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7026059_7027474_7027692_7027836_7028236_7029568_7029756_7031818_7032362_7032594_7032676_7036547_7036755_7037382_7037506_7044539_7044728_7050029_7050130_7052422_7052575_7054770
transcript_60578.nnic	chrX	-	722	3	NNC	ENSMUSG00000063018.7	novel	885	4	NA	NA	-6670	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	25.5	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTTTGTGGCTTATTAT	NA	False	NA	-28	True	NA	NA	NA	7295897	7278341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_7278772_7290383_7290524_7295745
transcript_60579.known	chrX	-	885	4	FSM	ENSMUSG00000063018.7	ENSMUST00000150671.2	885	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	23.5372045918796	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGTTACTTTGTGGCTTAT	7929	False	NA	-31	True	NA	NA	NA	7311382	7278344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7278772_7290368_7290524_7295745_7295914_7311247
transcript_6058.known	chr10	+	2926	11	FSM	ENSMUSG00000005683.9	ENSMUST00000005826.9	2926	11	0	0	0	0	multi-exon	TRUE	canonical	3	1246	junction_9	132.722869167299	908	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAGCTTGCTCTTACGTA	NA	False	NA	18	True	AATAAA	-18	NA	128173602	128198348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128173829_128185621_128185673_128186301_128186410_128187067_128187134_128188542_128188675_128188891_128189081_128194202_128194403_128195038_128195169_128195302_128195405_128195812_128196023_128196836
transcript_60580.known	chrX	-	540	2	FSM	ENSMUSG00000063018.7	ENSMUST00000128571.2	540	2	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_1	0	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTACTTTGTGGCTTATTAT	NA	False	NA	-28	True	NA	NA	NA	7289227	7278341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7278772_7289117
transcript_60581.known	chrX	-	2353	17	FSM	ENSMUSG00000031143.5	ENSMUST00000033483.5	2353	17	0	0	0	0	multi-exon	FALSE	canonical	3	186	junction_12	25.3807721267498	64	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCACGCTTAGGCATGGATT	NA	False	NA	-9	True	AATAAA	-19	NA	7471756	7460047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7460407_7460768_7460844_7460922_7460983_7461198_7461295_7461534_7461643_7461724_7461827_7461943_7462061_7462141_7462262_7462732_7462853_7462969_7463033_7463776_7463972_7465396_7465576_7465672_7465740_7465867_7465975_7466859_7466993_7470398_7470577_7471482
transcript_60585.known	chrX	+	2301	9	FSM	ENSMUSG00000031145.16	ENSMUST00000033485.14	2301	9	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	5.54526825320471	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTATTGTTTATTTAGCC	NA	False	NA	97	True	AAAAAG	-31	NA	7523498	7534197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7523740_7524859_7524946_7525774_7525959_7529703_7529818_7530091_7530230_7531168_7531373_7531465_7531653_7532510_7532811_7533350
transcript_60588.known	chrX	-	1157	5	FSM	ENSMUSG00000031146.7	ENSMUST00000033486.6	1157	5	0	0	0	0	multi-exon	FALSE	canonical	3	2052	junction_4	105.587641322268	2159	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAATAAGTTAACTTTTTTT	NA	False	NA	NA	False	AATAAA	-28	NA	7537629	7534179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7534746_7535165_7535257_7535653_7535750_7535841_7535998_7537381
transcript_60590.known	chrX	-	1212	4	FSM	ENSMUSG00000031146.7	ENSMUST00000136155.2	1212	4	0	0	0	0	multi-exon	FALSE	canonical	3	2052	junction_3	118.4229707447	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATGTTTAAGTCTATAAT	NA	False	NA	NA	False	AATAAA	-9	NA	7537611	7534198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7534746_7535165_7535257_7535653_7535998_7537381
transcript_60594.known	chrX	+	3579	11	FSM	ENSMUSG00000031148.15	ENSMUST00000049896.13	3579	11	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_9	32.218007387174	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTCGCATTTGTGTTATC	NA	False	NA	NA	False	NA	NA	NA	7563369	7576501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7563635_7564731_7564893_7564994_7565120_7568301_7568412_7569608_7569823_7571538_7571672_7572249_7572389_7572566_7572691_7572930_7573001_7574174_7574261_7574349
transcript_606.known	chr1	+	818	4	FSM	ENSMUSG00000026111.16	ENSMUST00000193979.6	818	4	0	0	0	0	multi-exon	FALSE	canonical	2	16	junction_1	217.192694781999	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCATTTTATCCAGCTCTT	NA	False	NA	NA	False	NA	NA	NA	37469266	37476351	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_37469575_37470377_37470658_37471631_37471753_37476242
transcript_60600.nnic	chrX	+	1634	12	NNC	ENSMUSG00000039382.13	novel	955	8	NA	NA	128	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	82.9009166624295	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCATTTATGACTTGACC	4844	False	NA	-2	True	AATAAA	-11	NA	7589293	7594421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_7589480_7589528_7589554_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
transcript_60605.known	chrX	+	1568	11	FSM	ENSMUSG00000039382.13	ENSMUST00000115689.10	1568	11	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	58.911883351324	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCAAGGGTGGGGCGTGCTT	4038	False	NA	17	True	AATAAA	-30	NA	7588487	7594440	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7588618_7590091_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
transcript_60607.nnic	chrX	+	1360	11	NNC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	-11	2	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_10	63.2250741399328	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTTTTTGTGACTGGAGT	3995	False	NA	15	True	AATAAA	-17	NA	7588444	7594246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7594049
transcript_60608.nnic	chrX	+	1541	11	NNC	ENSMUSG00000039382.13	novel	1609	11	NA	NA	-11	6	at_least_one_novel_splicesite	FALSE	canonical	3	37	junction_10	63.2250741399328	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGACTTGACCTCAAGG	3995	False	NA	4	True	AATAAA	-17	NA	7588444	7594427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7594049
transcript_60609.known	chrX	+	1510	11	FSM	ENSMUSG00000039382.13	ENSMUST00000115688.8	1510	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	67.1240642392875	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGCATTTATGACTTGACC	4039	False	NA	-2	True	AATAAA	-11	NA	7588488	7594421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7588618_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593450_7593511_7593585_7593732_7593988
transcript_60616.nnic	chrX	+	1336	11	NNC	ENSMUSG00000039382.13	novel	955	8	NA	NA	-100	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	65.4110082478477	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGCACTTTTTGTGACTGGA	5234	False	NA	13	True	AATAAA	-15	NA	7589683	7594244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_7589774_7590087_7590160_7590262_7590338_7590425_7590531_7592169_7592276_7592436_7592532_7592924_7593005_7593116_7593326_7593408_7593511_7593585_7593732_7593988
transcript_60624.known	chrX	+	1339	3	FSM	ENSMUSG00000031149.8	ENSMUST00000033489.8	1339	3	0	0	0	0	multi-exon	FALSE	canonical	3	755	junction_2	75.5	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCCTCCTGTGTGAAG	1170	False	NA	7	True	AATAAA	-20	NA	7594677	7597303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7595002_7595954_7596173_7596506
transcript_60625.nic	chrX	+	1551	2	ISM	ENSMUSG00000031149.8	ENSMUST00000033489.8	1339	3	122	0	122	0	intron_retention	FALSE	canonical	3	906	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGGCCTCCTGTGTGAAG	1292	False	NA	7	True	AATAAA	-20	NA	7594799	7597303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_7595002_7595954
transcript_60626.nic	chrX	+	2948	10	NIC	ENSMUSG00000000134.18	novel	6328	7	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	90.0647229551485	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	22	True	AATAAA	-33	NA	7628792	7641438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_7628870_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_60628.known	chrX	+	3277	10	FSM	ENSMUSG00000000134.18	ENSMUST00000077680.10	3277	10	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_1	30.4046780026437	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGAGTCTCCCGTTCTTGTT	NA	False	NA	25	True	AATAAA	-36	NA	7628896	7641441	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_60629.known	chrX	+	3239	10	FSM	ENSMUSG00000000134.18	ENSMUST00000115679.8	3239	10	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	88.3978101510788	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTCTCCCGTTCTTGT	NA	False	NA	24	True	AATAAA	-35	NA	7628914	7641440	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7629300_7631745_7631860_7632812_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_60630.nic	chrX	+	2911	10	NIC	ENSMUSG00000000134.18	novel	2943	10	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_1	87.2919042249043	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	22	True	AATAAA	-33	NA	7630197	7641438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_7630238_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_60633.known	chrX	+	3163	9	FSM	ENSMUSG00000000134.18	ENSMUST00000079542.13	3163	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_4	94.1407689314252	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCATTGAGTCTCCCGTTCTT	NA	False	NA	22	True	AATAAA	-33	NA	7628902	7641438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7629300_7631745_7631860_7632793_7633095_7633677_7633924_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_60636.known	chrX	+	2943	10	FSM	ENSMUSG00000000134.18	ENSMUST00000115677.8	2943	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	93.7669820010234	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTGAGTCTCCCGTTCTTGT	NA	False	NA	24	True	AATAAA	-35	NA	7630197	7641440	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7630268_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_60637.known	chrX	+	2989	10	FSM	ENSMUSG00000000134.18	ENSMUST00000101695.9	2989	10	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	96.5471803041982	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCATTGAGTCTCCCGTTC	NA	False	NA	20	True	AATAAA	-31	NA	7630279	7641436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7630400_7631745_7631860_7632793_7633095_7633677_7633924_7634131_7634237_7635668_7635787_7637012_7637070_7637233_7637310_7638687_7638836_7639732
transcript_60638.known	chrX	+	3015	26	FSM	ENSMUSG00000031153.17	ENSMUST00000115675.9	3015	26	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_12	17.6906755099968	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTCTGGTCTCATTCT	3260	False	NA	7	True	NA	NA	NA	7656233	7686802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7656308_7658308_7658376_7658514_7658577_7660498_7660526_7661230_7661339_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7669832_7669926_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7684629_7685405_7685561_7686240
transcript_60639.known	chrX	+	3156	25	FSM	ENSMUSG00000031153.17	ENSMUST00000065932.14	3156	25	0	0	0	0	multi-exon	FALSE	canonical	2	42	junction_24	10.7256669049321	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCTGGTCTCATTCTTTTC	3030	False	NA	11	True	NA	NA	NA	7656003	7686806	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7656308_7658308_7658376_7658514_7658577_7660498_7660526_7661230_7661339_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7684629_7685405_7685561_7686240
transcript_60641.known	chrX	+	2867	24	FSM	ENSMUSG00000031153.17	ENSMUST00000101694.10	2867	24	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_3	21.1150418078725	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGTCTGGTCTCATTCT	3273	False	NA	7	True	NA	NA	NA	7656246	7686802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7656308_7658308_7658376_7658514_7658577_7665528_7665668_7666395_7666581_7666774_7666823_7667415_7667448_7667542_7667591_7667728_7667829_7669561_7669640_7669832_7669926_7670598_7670734_7676131_7676228_7676491_7676705_7676846_7676961_7678520_7678599_7678703_7678800_7678920_7678978_7679070_7679171_7680806_7680938_7684265_7684389_7684534_7684629_7685405_7685561_7686240
transcript_60648.known	chrX	+	2471	9	FSM	ENSMUSG00000031154.16	ENSMUST00000115666.8	2471	9	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_8	127.394073645519	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TCAACAAATCAAAAAGAATA	NA	False	NA	NA	False	ATTAAA	-21	NA	7708094	7741099	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7708950_7722542_7722637_7733753_7733819_7733905_7734063_7734161_7734311_7738234_7738439_7739792_7739995_7740078_7740193_7740468
transcript_60651.known	chrX	+	1527	5	FSM	ENSMUSG00000031156.19	ENSMUST00000115663.10	1527	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_4	39.7586468582622	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTGGGTTGGAAAGCCTGGA	NA	False	NA	NA	False	AATAAA	-20	NA	7750482	7760703	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7758378_7759107_7760429
transcript_60652.known	chrX	+	3094	4	FSM	ENSMUSG00000031156.19	ENSMUST00000115660.12	3094	4	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	9.0921211313239	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAGGAAGCACTCAAGCC	NA	False	NA	NA	False	NA	NA	NA	7750266	7760731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7750673_7751987_7752171_7755850_7756003_7758378
transcript_60654.known	chrX	-	1148	7	FSM	ENSMUSG00000031157.11	ENSMUST00000115655.8	1148	7	0	0	0	0	multi-exon	FALSE	canonical	3	349	junction_6	78.4950458450864	256	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGTGTTGTTTGTAAACA	586	False	NA	-65	True	NA	NA	NA	7765218	7760821	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765009
transcript_60655.known	chrX	-	763	7	FSM	ENSMUSG00000031157.11	ENSMUST00000156741.8	763	7	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_6	182.287014226345	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTCCAGCAGCGCCCTTAC	565	False	NA	NA	False	NA	NA	NA	7765239	7761032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765204
transcript_60657.known	chrX	-	1104	7	FSM	ENSMUSG00000031157.11	ENSMUST00000033497.9	1104	7	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_6	154.654902569847	158	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGGCTTGAGTGCTTC	296	False	NA	-1	True	AATAAA	-22	NA	7765508	7760757	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7761107_7761403_7761468_7761842_7762122_7762231_7762345_7762539_7762652_7764789_7764876_7765407
transcript_60660.known	chrX	+	2381	6	FSM	ENSMUSG00000031158.12	ENSMUST00000033498.10	2381	6	0	0	0	0	multi-exon	FALSE	canonical	3	843	junction_3	44.2511016812011	861	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACCTTGCTTGCTGTTTGTC	1189	False	NA	2	True	NA	NA	NA	7765595	7774590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7765709_7767199_7767300_7769911_7769976_7772309_7772439_7772519_7772631_7772726
transcript_60662.nic	chrX	+	1034	5	NIC	ENSMUSG00000031158.12	novel	2381	6	NA	NA	-56	-103	intron_retention	FALSE	canonical	3	843	junction_3	49.2290564605904	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTATGTCTGCCTTCAGT	1133	False	NA	31	True	TTTAAA	-18	NA	7765539	7773106	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_7765709_7767199_7767300_7769911_7769976_7772309_7772631_7772726
transcript_60666.nnic	chrX	-	1101	3	NNC	ENSMUSG00000031160.5	novel	1077	2	NA	NA	92	-13	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	2	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTTCCTTTATACTAAATCT	NA	False	NA	NA	False	AATAAA	-18	NA	7794754	7790527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_7791453_7793757_7793887_7794707
transcript_60667.known	chrX	+	2193	3	FSM	ENSMUSG00000039278.11	ENSMUST00000041096.4	2193	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_1	26.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTGGTCGGAGAGGGAAATC	NA	False	NA	NA	False	AATAAA	-17	NA	7786060	7790649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7786284_7788286_7788754_7789146
transcript_60668.known	chrX	-	1077	2	FSM	ENSMUSG00000031160.5	ENSMUST00000033500.5	1077	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATCTTTGTTTTTCTTTT	NA	False	NA	NA	False	AATAAA	-31	NA	7794846	7790514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7791453_7794707
transcript_60669.known	chrX	-	4142	29	FSM	ENSMUSG00000031161.16	ENSMUST00000033501.15	4142	29	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_28	71.4613049995933	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAAGTGCTTTTTTTTTT	NA	False	NA	NA	False	AATAAA	-23	NA	7814128	7796360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813813
transcript_6067.known	chr10	-	1307	5	FSM	ENSMUSG00000039914.7	ENSMUST00000220027.2	1307	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	35.9400542570542	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTCATTTTTTGAG	7245	False	NA	-3	True	AATAAA	-12	NA	128204560	128198968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128199661_128200273_128200376_128200891_128201085_128203875_128204023_128204387
transcript_60670.known	chrX	-	4069	29	FSM	ENSMUSG00000031161.16	ENSMUST00000115642.8	4069	29	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_28	46.7627942767691	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAAAGTGCTTTTTTTTTTTA	NA	False	NA	NA	False	AATAAA	-25	NA	7814128	7796358	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7796777_7797022_7797152_7797247_7797395_7797518_7797621_7797704_7798199_7798301_7798477_7800410_7800561_7802308_7802502_7802620_7802690_7803180_7803315_7803542_7803712_7803865_7803995_7804081_7804251_7804464_7804533_7804624_7804732_7805681_7805772_7805844_7805905_7805998_7806065_7806156_7806284_7808082_7808152_7808271_7808377_7809625_7809724_7809879_7809977_7810812_7810854_7810952_7811038_7812901_7812991_7813141_7813271_7813363_7813484_7813888
transcript_60671.known	chrX	-	1902	6	FSM	ENSMUSG00000031162.15	ENSMUST00000033502.14	1902	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.489897948556636	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAGCGGTGTCTATGGTTCTT	NA	False	NA	NA	False	AATAAA	-23	NA	7834149	7825498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7826368_7826821_7826948_7828162_7828309_7828409_7828788_7829241_7829481_7834005
transcript_60673.nnic	chrX	-	998	4	NNC	ENSMUSG00000031163.3	novel	673	4	NA	NA	2619	0	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_3	9.28559218478941	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCACTCTTGGCAGAG	NA	False	NA	-9	True	AATAAA	-21	NA	7882112	7870438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_7870742_7871941_7872098_7881456_7881595_7881711
transcript_60674.known	chrX	-	673	4	FSM	ENSMUSG00000031163.3	ENSMUST00000033503.3	673	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	18.5472369909914	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCCTCACTCTTGGCAGAG	NA	False	NA	-9	True	AATAAA	-21	NA	7884731	7870438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7870742_7871941_7872098_7881456_7881595_7884655
transcript_60675.known	chrX	-	386	1	FSM	ENSMUSG00000080877.2	ENSMUST00000118652.2	386	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	7	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACATCGGTCTGCAATGT	NA	False	NA	NA	False	NA	NA	NA	7905235	7904849	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7904800_7905200
transcript_60677.known	chrX	-	2778	6	FSM	ENSMUSG00000039231.19	ENSMUST00000115637.8	2778	6	0	0	0	0	multi-exon	TRUE	canonical	3	73	junction_5	15.551205741035	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAGCTTGAGATTTGGGAG	7355	False	NA	NA	False	NA	NA	NA	7940497	7927673	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7929223_7929934_7930065_7930149_7930297_7936826_7937490_7938561_7938708_7940354
transcript_60678.known	chrX	-	3116	6	FSM	ENSMUSG00000039231.19	ENSMUST00000115638.10	3116	6	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_5	11.3947356265953	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAATTCAAGCTGGGCCCTT	9880	False	NA	NA	False	NA	NA	NA	7940999	7927409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7929223_7929934_7930065_7930149_7930297_7936826_7937490_7938561_7938708_7940782
transcript_6068.known	chr10	-	1434	5	FSM	ENSMUSG00000039914.7	ENSMUST00000220227.2	1434	5	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_4	16.3248277173145	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTCATTTTTTGAG	6939	False	NA	-3	True	AATAAA	-12	NA	128204866	128198968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128199661_128200273_128200376_128200891_128201085_128203875_128204023_128204566
transcript_60680.known	chrX	-	2807	5	FSM	ENSMUSG00000039231.19	ENSMUST00000150095.8	2807	5	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_4	11.6054943884352	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATTTGGGAGATTGAGGTC	6992	False	NA	NA	False	NA	NA	NA	7940860	7927664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7929223_7929934_7930297_7936826_7937490_7938561_7938708_7940782
transcript_60681.known	chrX	+	1449	4	FSM	ENSMUSG00000087193.8	ENSMUST00000126286.8	1449	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	38.6091526281874	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGGGCCACTGGATTTT	7727	False	NA	29	True	TATAAA	-19	NA	7915486	7939198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7915823_7926454_7926526_7936874_7937304_7938585
transcript_60682.known	chrX	+	1177	4	FSM	ENSMUSG00000087193.8	ENSMUST00000188632.2	1177	4	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_1	23.6971634495683	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACTCCTGGGCCACTGGAT	NA	False	NA	26	True	TATAAA	-16	NA	7917829	7939195	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_7917897_7926454_7926526_7936874_7937304_7938585
transcript_60687.nnic	chrX	+	1642	3	NIC	ENSMUSG00000087193.8	novel	1449	4	NA	NA	-188	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_1	48	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGGGCCACTGGATTTT	7463	False	NA	29	True	TATAAA	-19	NA	7915222	7939198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_7915823_7936874_7937304_7938585
transcript_60689.nic	chrX	+	683	3	ISM	ENSMUSG00000087193.8	ENSMUST00000188632.2	1177	4	-3	1779	-3	-1064	5prime_fragment	FALSE	canonical	3	56	junction_1	9.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTCTGCCGTGGCTCCCAG	NA	False	NA	3	True	NA	NA	NA	7917826	7937416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_7917897_7926454_7926526_7936874
transcript_6069.known	chr10	-	1421	5	FSM	ENSMUSG00000039914.7	ENSMUST00000043211.7	1421	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_3	37.9629753839185	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAATTTGTCATTTTTTGAG	6982	False	NA	-3	True	AATAAA	-12	NA	128204823	128198968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128199661_128200273_128200376_128200891_128201115_128203875_128204023_128204566
transcript_60690.nnic	chrX	+	1409	3	NIC	ENSMUSG00000087193.8	novel	1177	4	NA	NA	-300	0	combination_of_known_splicesites	FALSE	canonical	3	67	junction_1	23	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTGGGCCACTGGATTTT	9770	False	NA	29	True	TATAAA	-19	NA	7917529	7939198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_7917897_7936874_7937304_7938585
transcript_60691.nnic	chrX	+	1279	3	NIC	ENSMUSG00000087193.8	novel	1177	4	NA	NA	-3	167	combination_of_known_splicesites	FALSE	canonical	3	67	junction_1	23	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATTTCACTTTTAAAAATC	NA	False	NA	NA	False	ATTAAA	-14	NA	7917826	7939365	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_7917897_7936874_7937304_7938585
transcript_60693.nnic	chrX	+	925	3	NIC	ENSMUSG00000087193.8	novel	1177	4	NA	NA	-3	381	combination_of_known_splicesites	TRUE	canonical	3	17	junction_2	25	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAGATGTCCGTTTCCATCA	NA	False	NA	NA	False	AATAAA	-21	NA	7917826	7941239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_7917897_7936874_7937304_7940813
transcript_60695.known	chrX	-	1166	3	FSM	ENSMUSG00000039231.19	ENSMUST00000127617.2	1166	3	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	20	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTCTGACCTCTGGTTTCA	7300	False	NA	NA	False	NA	NA	NA	7940552	7936667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7937490_7938561_7938708_7940354
transcript_60697.known	chrX	-	2114	12	FSM	ENSMUSG00000031165.7	ENSMUST00000033505.7	2114	12	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_8	4.36552989219744	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCTCAGCCACGTCGCCTG	7441	False	NA	NA	False	NA	NA	NA	7956737	7947691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_7948229_7951744_7951860_7952080_7952536_7952802_7952957_7953168_7953212_7953999_7954175_7954962_7955017_7955112_7955155_7955274_7955378_7955494_7955582_7956082_7956224_7956529
transcript_60706.known	chrX	-	1319	8	FSM	ENSMUSG00000031167.17	ENSMUST00000129947.9	1319	8	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_4	511.677353696364	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGTGAATGTCATTTT	6562	False	NA	NA	False	ATTAAA	-38	NA	8011935	8008710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_8009195_8009485_8009572_8009896_8009991_8010086_8010187_8010413_8010685_8010811_8010919_8011193_8011312_8011876
transcript_60709.known	chrX	-	969	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115619.8	969	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	431.400593673933	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTGCAAAGCTTTATGGTCA	6579	False	NA	NA	False	NA	NA	NA	8011918	8007022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_8007448_8009485_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
transcript_60710.known	chrX	-	1183	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115615.9	1183	7	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_1	305.254766092558	625	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTGATAATGCTTTTTC	6535	False	NA	-9	True	ATTAAA	-23	NA	8011962	8008599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_8009195_8009485_8009569_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
transcript_60712.known	chrX	-	1152	7	FSM	ENSMUSG00000031167.17	ENSMUST00000115617.10	1152	7	0	0	0	0	multi-exon	FALSE	canonical	3	391	junction_1	339.486213105759	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACAAATCAATACTGATAATG	6562	False	NA	-16	True	ATTAAA	-16	NA	8011935	8008606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_8009195_8009485_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
transcript_60718.known	chrX	-	1274	6	FSM	ENSMUSG00000031167.17	ENSMUST00000141925.8	1274	6	0	0	0	0	multi-exon	FALSE	canonical	3	764	junction_2	204.799804687407	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGAGCTGCGCTGAAACGTC	6536	False	NA	NA	False	TATAAA	-7	NA	8011961	8009128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_8009195_8009489_8009569_8009896_8009991_8010086_8010919_8011193_8011312_8011876
transcript_60727.known	chrX	-	2792	7	FSM	ENSMUSG00000031167.17	ENSMUST00000040010.10	2792	7	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	443.550604653955	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATGTGTGTTACACGTA	6561	False	NA	-3	True	ATTAAA	-16	NA	8011936	8005216	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_8007448_8009489_8009572_8009896_8009991_8010086_8010187_8010811_8010919_8011193_8011312_8011876
transcript_60728.known	chrX	-	2648	6	FSM	ENSMUSG00000039201.11	ENSMUST00000239441.2	2648	6	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_4	11.0018180315801	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTGTATTTCTCTATTTC	NA	False	NA	-7	True	NA	NA	NA	8042420	8020710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_8022306_8022554_8022744_8022889_8023018_8038976_8039132_8040439_8040550_8041949
transcript_60729.nnic	chrX	-	2229	5	NNC	ENSMUSG00000039201.11	novel	2184	5	NA	NA	8295	0	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	65.4064217030713	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCACTGTGGTATGTGTAT	5177	False	NA	-18	True	NA	NA	NA	8033835	8020721	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_8022306_8022554_8022744_8022889_8023018_8033429_8033624_8033701
transcript_6073.known	chr10	-	1130	7	FSM	ENSMUSG00000025374.14	ENSMUST00000026439.14	1130	7	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	32.5444140965679	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTCTGTGTTTCTC	NA	False	NA	-7	True	AATAAA	-13	NA	128245743	128237263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115_128245218_128245604
transcript_60730.known	chrX	-	2184	5	FSM	ENSMUSG00000039201.11	ENSMUST00000143984.2	2184	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_3	59.3738157776641	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATACAAAGGTCACTGTGGT	NA	False	NA	-26	True	NA	NA	NA	8042130	8020729	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_8022306_8022554_8022744_8022889_8023018_8040439_8040550_8041949
transcript_60731.nnic	chrX	-	2336	4	NNC	ENSMUSG00000039201.11	novel	2184	5	NA	NA	8266	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_3	57.1858568373529	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCACTGTGGTATGTGTAT	5148	False	NA	-18	True	NA	NA	NA	8033864	8020721	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_8022306_8022554_8022744_8022889_8023018_8033429
transcript_60733.known	chrX	-	1743	5	FSM	ENSMUSG00000031168.15	ENSMUST00000033509.15	1743	5	0	0	0	0	multi-exon	FALSE	canonical	3	751	junction_2	18.0190871022924	1134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTGAGAGATATTTAATTACT	NA	False	NA	-3	True	AATAAA	-19	NA	8059751	8051567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_8052073_8052882_8053014_8053121_8053159_8056317_8056676_8059039
transcript_60737.known	chrX	-	1883	14	FSM	ENSMUSG00000031169.14	ENSMUST00000082320.12	1883	14	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	23.6039812106789	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCTCGGTTTTTTGGTTTTT	1964	False	NA	0	True	AATAAA	-19	NA	8072764	8060086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8069264_8069283_8069397_8069529_8069607_8069790_8070030_8070075_8070434_8070628_8071803_8071973_8072613
transcript_60739.known	chrX	-	1839	13	FSM	ENSMUSG00000031169.14	ENSMUST00000089402.10	1839	13	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_2	6.61857655055493	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGCTCGGTTTTTTGGTTT	1988	False	NA	-2	True	AATAAA	-17	NA	8072740	8060088	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_8060517_8064213_8064325_8065305_8065392_8065469_8065534_8065624_8065702_8067414_8067516_8067682_8067809_8069397_8069529_8069607_8069790_8070030_8070075_8070434_8070628_8071803_8071973_8072613
transcript_60743.known	chrX	-	1529	13	FSM	ENSMUSG00000031171.12	ENSMUST00000115594.8	1529	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	84.1872912024137	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGCACGTTGCTTACTT	NA	False	NA	-14	True	AATAAA	-21	NA	8118549	8106658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_8107070_8111298_8111341_8111522_8111670_8111790_8111889_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
transcript_60744.known	chrX	-	1656	13	FSM	ENSMUSG00000031171.12	ENSMUST00000115595.8	1656	13	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_4	23.6231995198694	172	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGCACGTTGCTTACTT	NA	False	NA	-14	True	AATAAA	-21	NA	8118634	8106658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_8107070_8111298_8111341_8111522_8111712_8111790_8111889_8112574_8112659_8112770_8112874_8112965_8113020_8113107_8113161_8115217_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
transcript_60749.known	chrX	-	1047	5	FSM	ENSMUSG00000031171.12	ENSMUST00000147467.2	1047	5	0	0	0	0	multi-exon	FALSE	canonical	3	296	junction_2	13.7386316640341	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTGTGAAGTCAATGTTT	NA	False	NA	NA	False	AATAAA	-16	NA	8118602	8114760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_8115297_8116634_8116726_8116807_8116878_8117118_8117277_8118410
transcript_60751.known	chrX	+	1868	16	FSM	ENSMUSG00000031170.15	ENSMUST00000033512.11	1868	16	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	2.63818119165458	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTCTGAGCCGTGTGTT	5413	False	NA	NA	False	AATAAA	-17	NA	8137619	8146418	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_8137745_8138125_8138183_8138269_8138349_8138890_8139007_8139113_8139188_8139825_8139919_8140036_8140116_8142358_8142442_8142817_8142877_8142978_8143108_8143259_8143340_8143931_8144033_8144267_8144384_8145096_8145242_8145331_8145436_8145990
transcript_60752.known	chrX	-	842	1	FSM	ENSMUSG00000078208.2	ENSMUST00000105006.2	842	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATCAAGTTGATGTTTAAA	NA	False	NA	NA	False	AATAAA	-31	NA	8829214	8828372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_8828400_8829200
transcript_60754.known	chrX	-	850	1	FSM	ENSMUSG00000060685.5	ENSMUST00000075792.5	850	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	713	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGATGTTTAAATTCTTAAC	NA	False	NA	NA	False	AATAAA	-39	NA	8842798	8841948	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_8841900_8842800
transcript_60755.known	chrX	-	856	1	FSM	ENSMUSG00000078206.2	ENSMUST00000105004.2	856	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	337	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATCAAGTTGATGTTTAAA	NA	False	NA	NA	False	AATAAA	-31	NA	8852994	8852138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_8852100_8853000
transcript_60756.known	chrX	+	841	1	FSM	ENSMUSG00000071815.7	ENSMUST00000096509.7	841	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTATCAAGTTGATGTTTAAA	6682	False	NA	31	True	AATAAA	-31	NA	8899731	8900572	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_8899700_8900600
transcript_60757.known	chrX	+	847	1	FSM	ENSMUSG00000072249.4	ENSMUST00000097029.4	847	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	161	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTATCAAATTGATGCTTAAA	NA	False	NA	30	True	AATAAA	-30	NA	8929253	8930100	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_8929300_8930100
transcript_60758.known	chrX	-	2176	5	FSM	ENSMUSG00000031176.9	ENSMUST00000033519.3	2176	5	0	0	0	0	multi-exon	FALSE	canonical	3	232	junction_4	27.1523479647709	174	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCTGGCTCTGGTTGATCC	NA	False	NA	-1	True	AATAAA	-21	NA	9529242	9520505	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_9522303_9522618_9522697_9523279_9523404_9527218_9527261_9529107
transcript_60761.known	chrX	-	2926	17	FSM	ENSMUSG00000031174.18	ENSMUST00000073392.11	2926	17	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_1	17.609368067878	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGCTTGGAAGTATTT	NA	False	NA	0	True	AATAAA	-32	NA	10083159	10024454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
transcript_60763.known	chrX	-	2739	17	FSM	ENSMUSG00000031174.18	ENSMUST00000115533.8	2739	17	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	23.3939595569027	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACAGTTATTGTACTTTG	NA	False	NA	NA	False	AATGAA	-20	NA	10083159	10024610	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_10025089_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
transcript_60764.nnic	chrX	-	2569	16	NIC	ENSMUSG00000031174.18	novel	2926	17	NA	NA	14	0	combination_of_known_splicesites	FALSE	canonical	1	3	junction_9	31.060085139756	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGTGCTTGGAAGTATTT	NA	False	NA	0	True	AATAAA	-32	NA	10082958	10024454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_10025120_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
transcript_60769.nnic	chrX	-	2048	13	NIC	ENSMUSG00000031174.18	novel	2739	17	NA	NA	27	-3	combination_of_known_splicesites	FALSE	canonical	3	13	junction_6	36.1650345253841	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATATGTGCTTGGAAGTA	NA	False	NA	-3	True	AATAAA	-29	NA	10082945	10024457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_10025089_10028840_10028930_10030960_10031019_10032314_10032516_10044509_10044576_10048193_10048292_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
transcript_6077.known	chr10	-	1371	6	FSM	ENSMUSG00000025374.14	ENSMUST00000164199.8	1371	6	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_1	33.0732520324204	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGGAGTCTGTGTTTCTC	NA	False	NA	-7	True	AATAAA	-13	NA	128245597	128237263	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128237793_128244022_128244090_128244184_128244267_128244403_128244476_128244566_128244706_128245115
transcript_60772.known	chrX	-	2672	12	FSM	ENSMUSG00000031174.18	ENSMUST00000155734.8	2672	12	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_2	11.9343936614357	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATTACTGTGTTGATTGTT	NA	False	NA	NA	False	NA	NA	NA	10082997	10047206	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_10048292_10061056_10061223_10062210_10062394_10065149_10065275_10068248_10068405_10072361_10072521_10074911_10075062_10076837_10076997_10078036_10078100_10078963_10079057_10079767_10079894_10082790
transcript_60773.known	chrX	+	1733	8	FSM	ENSMUSG00000058254.13	ENSMUST00000076354.13	1733	8	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_5	9.20736173961258	84	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTTGTGGTTTTCTTCTTT	NA	False	NA	NA	False	AATAAA	-21	NA	10351396	10462844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_10351478_10445553_10445743_10448403_10448479_10450280_10450377_10451735_10451892_10456374_10456459_10461517_10461594_10461868
transcript_60774.known	chrX	+	447	2	FSM	ENSMUSG00000008035.13	ENSMUST00000144356.8	447	2	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGAGGTAGGCGGCAGTG	NA	False	NA	NA	False	NA	NA	NA	10581257	10584623	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_10581307_10584225
transcript_60775.known	chrX	+	2022	2	FSM	ENSMUSG00000008035.13	ENSMUST00000115524.8	2022	2	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	0	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAACTGGACAAGTGTG	1479	False	NA	NA	False	AATAAA	-15	NA	10583628	10585929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_10583944_10584222
transcript_60776.known	chrX	+	2019	2	FSM	ENSMUSG00000008035.13	ENSMUST00000008179.7	2019	2	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_1	0	309	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AACAAAACTGGACAAGTGTG	1479	False	NA	NA	False	AATAAA	-15	NA	10583628	10585929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_10583944_10584225
transcript_60778.known	chrX	+	2324	9	FSM	ENSMUSG00000031007.3	ENSMUST00000033313.3	2324	9	0	0	0	0	multi-exon	FALSE	canonical	3	980	junction_3	62.8369666279333	627	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATTATGGTTACAGTTTTAT	NA	False	NA	84	True	AATAAA	-19	NA	12454039	12483288	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_12454175_12460999_12461131_12462394_12462527_12471105_12471202_12471356_12471495_12472519_12472574_12473169_12473320_12475073_12475194_12481920
transcript_60784.nnic	chrX	-	1312	7	NNC	ENSMUSG00000044148.7	novel	2699	7	NA	NA	110	7935	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	92.7932289196433	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCTTATCGTGGAAGCTGT	NA	False	NA	NA	False	NA	NA	NA	12539797	12513182	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_12513514_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
transcript_60785.nnic	chrX	-	1269	7	NNC	ENSMUSG00000044148.7	novel	2699	7	NA	NA	42	4147	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	92.7932289196433	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTGTCTAGACTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	12539865	12516970	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_12517191_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
transcript_60786.known	chrX	-	2699	7	FSM	ENSMUSG00000044148.7	ENSMUST00000060108.7	2699	7	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_4	24.9377001523575	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTTACAGTTTTTAATTTC	NA	False	NA	-3	True	AATAAA	-25	NA	12539907	12521117	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_12522726_12524100_12524264_12528888_12529069_12530738_12530889_12535765_12535886_12539264_12539400_12539564
transcript_60791.known	chrX	+	1749	2	FSM	ENSMUSG00000087424.2	ENSMUST00000127521.2	1749	2	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATAGGGCTCGGGTATGGC	NA	False	NA	NA	False	AATAAA	-18	NA	12908253	12911449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_12908349_12909795
transcript_60794.known	chrX	+	11887	45	FSM	ENSMUSG00000031010.18	ENSMUST00000089302.11	11887	45	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_1	219.011541405002	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGGTTTTTCTTTCATTT	823	False	NA	NA	False	AATAAA	-16	NA	12937752	13039567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_12937973_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982862_12982997_12987671_12987760_12989406_12989750_12990806_12990903_12991634_12991847_12994446_12994688_12995215_12995366_12996464_12996586_12997965_12998097_12998308_12998588_13001182_13001309_13002683_13002810_13003846_13004014_13006347_13006457_13006648_13006796_13007945_13008093_13010524_13010748_13011365_13011587_13014183_13014375_13017508_13017683_13020330_13020473_13022232_13022987_13023907_13024032_13024957_13025184_13026012_13026143_13026985_13027172_13027552_13027774_13027861_13027951_13030950_13031108_13031510_13031724_13032870_13032967_13035585
transcript_60795.known	chrX	+	2772	17	FSM	ENSMUSG00000031010.18	ENSMUST00000169594.9	2772	17	0	0	0	0	multi-exon	TRUE	canonical	3	336	junction_14	127.465421168841	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAGAAGAGCCTACATGA	807	False	NA	NA	False	NA	NA	NA	12937736	12989688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_12937973_12938453_12938565_12960162_12960417_12964688_12964835_12966671_12966752_12969566_12969680_12970821_12971041_12973303_12973420_12973902_12974155_12974228_12974368_12976314_12976468_12977330_12977436_12979798_12980006_12980746_12980884_12982862_12982997_12987671_12987760_12989406
transcript_60796.known	chrX	+	1210	1	FSM	ENSMUSG00000084349.4	ENSMUST00000120557.2	1210	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	296	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATTCCAGGACCACTTTGT	NA	False	NA	NA	False	AAGAAA	-28	NA	13068809	13070019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_13068800_13070000
transcript_60797.known	chrX	+	4692	17	FSM	ENSMUSG00000000787.13	ENSMUST00000000804.7	4692	17	0	0	0	0	multi-exon	TRUE	canonical	3	179	junction_1	98.1322449554681	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTCGTTTGATTGTCCAT	NA	False	NA	18	True	AATAAA	-18	NA	13147208	13160291	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_13147397_13150416_13150475_13151153_13151202_13152272_13152406_13153463_13153623_13153702_13153803_13154023_13154160_13154517_13154604_13154811_13154911_13155018_13155180_13155633_13155779_13156075_13156221_13156417_13156600_13156684_13156803_13157139_13157294_13157401_13157542_13157651
transcript_60804.known	chrX	+	4167	15	FSM	ENSMUSG00000025037.7	ENSMUST00000026013.6	4167	15	0	0	0	0	multi-exon	FALSE	canonical	3	197	junction_7	23.3440330181188	101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGATAGGCTTCTCTGATTTG	NA	False	NA	21	True	AATAAA	-22	NA	16485936	16554057	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_16486153_16500420_16500516_16505302_16505441_16524806_16524912_16525683_16525776_16528555_16528698_16530889_16531040_16531890_16532051_16539085_16539183_16543793_16543848_16547052_16547111_16548439_16548538_16550202_16550315_16551220_16551284_16551470
transcript_6081.known	chr10	+	3144	7	FSM	ENSMUSG00000025373.15	ENSMUST00000096386.13	3144	7	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_5	11.6535640709422	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATTCTTAGTCACCCCCCT	315	False	NA	NA	False	AATAAA	-17	NA	128247614	128276207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128247695_128250987_128251171_128264459_128264573_128271181_128271454_128272336_128272473_128273176_128273281_128273951
transcript_60812.nnic	chrX	-	2323	14	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68020	0	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_13	14.945265027612	91	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACCATTTTATTGTA	NA	False	NA	-9	True	ATTAAA	-17	NA	17117587	16998287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
transcript_60813.nnic	chrX	-	2303	14	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68062	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_13	30.5403022115302	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACCATTTTATTGTA	NA	False	NA	-9	True	ATTAAA	-17	NA	17117545	16998287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109839_17117502
transcript_60815.nnic	chrX	-	2195	14	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68020	-128	at_least_one_novel_splicesite	FALSE	canonical	3	77	junction_13	14.945265027612	19	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAAACAAGGTTTGTATT	NA	False	NA	NA	False	AATAAA	-29	NA	17117587	16998415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
transcript_60816.nnic	chrX	-	2140	13	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68052	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_12	30.7679486912382	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACCATTTTATTGTA	NA	False	NA	-9	True	ATTAAA	-17	NA	17117555	16998287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17117502
transcript_60817.nnic	chrX	-	2184	13	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68020	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_8	31.8576477823179	10	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACCATTTTATTGTA	NA	False	NA	-9	True	ATTAAA	-17	NA	17117587	16998287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
transcript_60821.nnic	chrX	-	2217	13	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68020	0	at_least_one_novel_splicesite	TRUE	canonical	1	2	junction_1	31.5471428535489	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTTGACCATTTTATTGTA	NA	False	NA	-9	True	ATTAAA	-17	NA	17117587	16998287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_16998612_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17109665_17109817_17117502
transcript_60822.nnic	chrX	-	2012	13	NNC	ENSMUSG00000025038.8	novel	2554	15	NA	NA	68052	-128	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_12	30.7679486912382	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAAGAAACAAGGTTTGTATT	NA	False	NA	NA	False	AATAAA	-29	NA	17117555	16998415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_16998612_17014510_17014617_17027489_17027583_17028929_17029128_17067284_17067416_17070991_17071189_17073918_17074062_17081896_17082063_17089326_17089466_17090177_17090292_17092576_17092829_17096739_17096964_17117502
transcript_60828.known	chrX	-	1983	5	FSM	ENSMUSG00000025040.14	ENSMUST00000026016.13	1983	5	0	0	0	0	multi-exon	TRUE	canonical	3	209	junction_3	21.435951110226	144	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGATTGTGCTTATATATCC	NA	False	NA	-9	True	AATAAA	-21	NA	17438564	17422802	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_17424251_17424919_17425049_17434271_17434348_17437541_17437699_17438391
transcript_6083.known	chr10	+	4533	28	FSM	ENSMUSG00000025369.16	ENSMUST00000026433.9	4533	28	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_11	16.862633913377	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTTGTGGGTGCCTCTGT	2667	False	NA	46	True	TATAAA	-19	NA	128295162	128326041	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305_128301376_128304663_128304740_128304874_128305007_128305110_128305227_128305533_128305659_128310069_128310130_128310240_128310279_128310551_128310683_128310861_128310934_128316218_128316333_128316719_128316874_128317951_128318072_128318159_128318223_128318552_128318812_128319043_128319206_128319459_128319525_128319947_128320084_128320165_128320333_128321428_128321564_128323123_128323506_128323802_128323887_128324764
transcript_60832.known	chrX	+	4417	5	FSM	ENSMUSG00000060090.17	ENSMUST00000033372.13	4417	5	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_2	17.8395627749113	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTTGATGTCTATACTT	NA	False	NA	3	True	AATAAA	-18	NA	20230719	20267092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_20231068_20243119_20243786_20247943_20248059_20263459_20263546_20263890
transcript_60839.known	chrX	+	4866	13	FSM	ENSMUSG00000037315.16	ENSMUST00000115384.9	4866	13	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_1	19.6800801714717	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTCAGTGTGATGATT	NA	False	NA	9	True	ATTAAA	-17	NA	20291926	20386178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_20292070_20295261_20295371_20301449_20301538_20326754_20326812_20328350_20328431_20345752_20345911_20355940_20356132_20360395_20360608_20365664_20365833_20368634_20368752_20377258_20377730_20378974_20379093_20383224
transcript_60843.known	chrX	+	3564	24	FSM	ENSMUSG00000031060.17	ENSMUST00000115374.8	3564	24	0	0	0	0	multi-exon	TRUE	canonical	3	108	junction_4	93.2983708932913	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTCATGTCCTAGTAT	394	False	NA	41	True	AATAAA	-29	NA	20483860	20517140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_20484291_20486212_20486354_20501969_20502154_20503664_20503896_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
transcript_60845.known	chrX	+	3172	23	FSM	ENSMUSG00000031060.17	ENSMUST00000084383.10	3172	23	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_9	72.7799809002085	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTCTCATGTCCTAGTAT	555	False	NA	41	True	AATAAA	-29	NA	20484021	20517140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511837_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382_20515533_20515626_20515693_20515770_20515960_20516039_20516115_20516401_20516509_20516585_20516716_20516797
transcript_6085.nic	chr10	+	1486	11	ISM	ENSMUSG00000025369.16	ENSMUST00000105235.10	4032	28	-77	19245	-4	1243	5prime_fragment	FALSE	canonical	3	89	junction_2	8.72696969170857	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTCTGTCTTGTGTTTTTA	2617	False	NA	NA	False	NA	NA	NA	128295112	128305980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_128295307_128297220_128297341_128298849_128298936_128299560_128299643_128299735_128299829_128301025_128301096_128301305_128301376_128304663_128304740_128304874_128305007_128305110_128305227_128305533
transcript_60850.known	chrX	+	2160	17	FSM	ENSMUSG00000031060.17	ENSMUST00000141128.2	2160	17	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_9	66.2334885084577	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTCAAAAACAGCTTCCAGC	557	False	NA	NA	False	AAAAAG	-5	NA	20484023	20515435	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_20484291_20486212_20486354_20501969_20502154_20505671_20505742_20507421_20507496_20508982_20509070_20510910_20510972_20511103_20511281_20511675_20511834_20512007_20512106_20512197_20512286_20513560_20513745_20513849_20513990_20514104_20514226_20514320_20514413_20514495_20514661_20515382
transcript_60853.nnic	chrX	-	818	4	NNC	ENSMUSG00000031059.10	novel	908	3	NA	NA	2	0	at_least_one_novel_splicesite	FALSE	canonical	3	226	junction_3	964.303317887525	825	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGTTACTGCTGCTTT	NA	False	NA	-4	True	ATTAAA	-14	NA	20483856	20481564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_20481782_20481952_20482084_20483298_20483521_20483608
transcript_60854.known	chrX	-	908	3	FSM	ENSMUSG00000031059.10	ENSMUST00000116621.2	908	3	0	0	0	0	multi-exon	FALSE	canonical	3	2198	junction_1	70	1395	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTGGTTACTGCTGCTTT	NA	False	NA	-4	True	ATTAAA	-14	NA	20483858	20481564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_20481782_20481952_20482084_20483298
transcript_60856.known	chrX	+	4044	26	FSM	ENSMUSG00000001924.16	ENSMUST00000089217.11	4044	26	0	0	0	0	multi-exon	TRUE	canonical	3	1167	junction_1	494.469940036804	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGCTAAGTTCGCATGTT	NA	False	NA	NA	False	NA	NA	NA	20524564	20549418	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_20524766_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
transcript_60857.known	chrX	+	4071	26	FSM	ENSMUSG00000001924.16	ENSMUST00000001989.9	4071	26	0	0	0	0	multi-exon	FALSE	canonical	3	2172	junction_1	357.223416925598	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTGCTAAGTTCGCATGTT	NA	False	NA	NA	False	NA	NA	NA	20529136	20549418	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_20529365_20534687_20534805_20534930_20534990_20535087_20535257_20535366_20535502_20536442_20536550_20536782_20536874_20536979_20537113_20537594_20537693_20537928_20538076_20538209_20538387_20538482_20538588_20538673_20538755_20539054_20539211_20541824_20541991_20542117_20542315_20544437_20544503_20544827_20545024_20545629_20545705_20545831_20546022_20547021_20547111_20547346_20547440_20547561_20547754_20548141_20548244_20548347_20548449_20548616
transcript_6087.known	chr10	-	691	7	FSM	ENSMUSG00000090841.3	ENSMUST00000218127.2	691	7	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	1160.32375750142	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTTTCTTTCTTT	8242	False	NA	-5	True	AATAAA	-20	NA	128329726	128326729	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128326903_128327588_128327634_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
transcript_60872.nic	chrX	+	2139	16	NIC	ENSMUSG00000031065.15	novel	3270	16	NA	NA	6	-913	combination_of_known_junctions	FALSE	canonical	3	24	junction_1	416.044580944559	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGCTTGATGTGTCTGTC	1866	False	NA	14	True	NA	NA	NA	20554198	20565125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_20554601_20559562_20559771_20560276_20560411_20560509_20560636_20560727_20560785_20560870_20560986_20561748_20561844_20561937_20562001_20562256_20562381_20562585_20562707_20562786_20562885_20562969_20563076_20563160_20563204_20563358_20563450_20564689_20564768_20564847
transcript_60875.known	chrX	+	3467	21	FSM	ENSMUSG00000031066.11	ENSMUST00000033383.3	3467	21	0	0	0	0	multi-exon	FALSE	canonical	3	183	junction_13	34.5694590643244	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTAGCTGTTTTGAGTGTT	NA	False	NA	3	True	NA	NA	NA	20570144	20586778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_20570359_20577987_20578098_20578268_20578400_20578564_20578683_20579075_20579222_20579353_20579416_20579535_20579636_20579986_20580161_20580252_20580412_20580745_20580971_20581091_20581176_20581266_20581362_20582985_20583193_20583993_20584044_20584232_20584512_20584592_20584664_20584917_20585031_20585303_20585454_20585537_20585654_20585831_20585921_20586004
transcript_60884.nic	chrX	+	2388	16	NIC	ENSMUSG00000001127.13	novel	2439	17	NA	NA	-39	0	combination_of_known_junctions	FALSE	non_canonical	1	66	junction_12	96.2243674382372	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGCTTGTTTATTTTG	1084	False	NA	23	True	NA	NA	NA	20664013	20726758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
transcript_60885.known	chrX	+	2358	16	FSM	ENSMUSG00000001127.13	ENSMUST00000001155.11	2358	16	0	0	0	0	multi-exon	FALSE	non_canonical	1	66	junction_12	87.7031356337959	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTTGCTTGTTTATTTTG	6273	False	NA	23	True	NA	NA	NA	20714781	20726758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151_20720355_20723850_20724028_20724116_20724164_20724632_20724752_20724980_20725113_20725923_20726059_20726217
transcript_60895.known	chrX	+	2581	10	FSM	ENSMUSG00000001127.13	ENSMUST00000152955.8	2581	10	0	0	0	0	multi-exon	FALSE	canonical	3	168	junction_6	87.3856218927361	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	6294	False	NA	NA	False	NA	NA	NA	20714802	20721749	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20719556_20719699_20719798_20719827_20719915_20720056_20720151
transcript_609.nnic	chr1	-	1325	8	NNC	ENSMUSG00000026088.16	novel	1231	7	NA	NA	-2	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_3	91.7463228424008	17	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGATCCACTCACCTG	NA	False	NA	0	True	AATAAA	-19	NA	37929494	37917968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_37918445_37918640_37918702_37919077_37919170_37920013_37920130_37920779_37920867_37921642_37921780_37924295_37924398_37929240
transcript_60900.nnic	chrX	+	942	7	NNC	ENSMUSG00000001127.13	novel	826	8	NA	NA	9	-37	at_least_one_novel_splicesite	FALSE	canonical	3	39	junction_6	124.993333155546	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACATGTCATTATGATATGT	6282	False	NA	NA	False	AATAAA	-17	NA	20714790	20719091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168_20718268_20718834
transcript_60903.nic	chrX	+	1585	6	ISM	ENSMUSG00000001127.13	ENSMUST00000136451.8	2439	17	-39	7608	-39	0	5prime_fragment	TRUE	canonical	3	74	junction_1	119.456100723236	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCTTTCTCCAACTATCT	1084	False	NA	NA	False	AATAAA	-12	NA	20664013	20719128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_20664121_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168
transcript_60905.known	chrX	+	1520	6	FSM	ENSMUSG00000001127.13	ENSMUST00000120356.8	1520	6	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	64.9935381403413	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACCCTTTCTCCAACTATCT	6308	False	NA	NA	False	AATAAA	-12	NA	20714816	20719128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_20714859_20716165_20716322_20716483_20716588_20717704_20717808_20717896_20718052_20718168
transcript_60906.known	chrX	+	833	6	FSM	ENSMUSG00000001131.12	ENSMUST00000009530.5	833	6	0	0	0	0	multi-exon	FALSE	canonical	3	257	junction_1	211.264384125673	269	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATATTTCTGTATAGTGTTT	NA	False	NA	18	True	AATAAA	-19	NA	20736459	20740974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_20736564_20737269_20737402_20739015_20739096_20739288_20739416_20739606_20739732_20740709
transcript_6091.known	chr10	-	562	7	FSM	ENSMUSG00000090841.3	ENSMUST00000217776.2	562	7	0	0	0	0	multi-exon	FALSE	canonical	1	11	junction_1	1173.093974165	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGTGTGATTTCTGTGTGG	8275	False	NA	NA	False	NA	NA	NA	128329693	128326842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128326903_128327154_128327217_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
transcript_60912.known	chrX	-	1636	9	FSM	ENSMUSG00000001128.8	ENSMUST00000001156.8	1636	9	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	23.4837044564949	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AACATAATATTGTGAAATAT	NA	False	NA	73	True	AATAGA	-13	NA	20797794	20791692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_20791999_20793519_20793632_20793773_20793963_20794191_20794366_20794566_20794759_20794881_20795053_20795834_20796011_20797390_20797542_20797629
transcript_60923.known	chrX	-	636	7	FSM	ENSMUSG00000001134.10	ENSMUST00000001162.10	636	7	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_5	225.323039705713	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGAATCACATAGTCCTTT	NA	False	NA	-14	True	ATTAAA	-14	NA	20828239	20818167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827873_20828026_20828172
transcript_60924.known	chrX	-	875	7	FSM	ENSMUSG00000001134.10	ENSMUST00000123836.2	875	7	0	0	0	0	multi-exon	FALSE	canonical	3	501	junction_1	60.2699943771544	295	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATGAGATTCAATTGGTAGC	NA	False	NA	NA	False	CATAAA	-22	NA	20828256	20817900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_20818263_20818446_20818511_20825596_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
transcript_60947.known	chrX	-	3548	6	FSM	ENSMUSG00000009406.14	ENSMUST00000009550.14	3548	6	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_1	13.1666244725062	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAGAAGAGGGAAATG	NA	False	NA	NA	False	NA	NA	NA	20816847	20799633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_20801788_20801869_20801972_20802470_20802903_20803355_20803803_20807792_20808037_20816678
transcript_60950.nnic	chrX	-	509	6	NIC	ENSMUSG00000001134.10	novel	875	7	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	227.721760049408	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACATAGTCCTTTTTTCCC	NA	False	NA	-8	True	ATTAAA	-20	NA	20828259	20818161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_20818263_20818446_20818511_20825973_20826042_20826176_20826259_20827918_20828026_20828172
transcript_60958.nnic	chrX	+	1094	5	NNC	ENSMUSG00000086877.8	novel	1144	6	NA	NA	-43	612	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_3	30.3016088681773	21	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCATGGTCATTGTGTT	NA	False	NA	7	True	NA	NA	NA	20828309	20853588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_20828835_20833967_20834048_20851664_20851705_20852217_20852400_20853321
transcript_60959.nnic	chrX	+	1083	5	NNC	ENSMUSG00000086877.8	novel	1412	4	NA	NA	-43	612	at_least_one_novel_splicesite	FALSE	canonical	3	91	junction_3	26.8048503073604	30	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCATGGTCATTGTGTT	NA	False	NA	7	True	NA	NA	NA	20828309	20853588	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_20828835_20833967_20834048_20851664_20851705_20852228_20852400_20853321
transcript_6096.known	chr10	-	608	6	FSM	ENSMUSG00000090841.3	ENSMUST00000217969.2	608	6	0	0	0	0	multi-exon	FALSE	canonical	2	43	junction_4	956.330152196405	453	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTGGTTCTTTCTTTCT	8242	False	NA	-7	True	AATAAA	-18	NA	128329726	128326731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328579_128329407_128329436_128329677
transcript_60968.known	chrX	-	714	5	FSM	ENSMUSG00000001134.10	ENSMUST00000142341.2	714	5	0	0	0	0	multi-exon	FALSE	canonical	3	539	junction_3	51.773545368267	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTACCCTTTTCCCTGT	NA	False	NA	NA	False	AATAAA	-20	NA	20828225	20825300	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_20825705_20825973_20826042_20826176_20826259_20827918_20828026_20828172
transcript_6097.known	chr10	-	665	6	FSM	ENSMUSG00000090841.3	ENSMUST00000164181.2	665	6	0	0	0	0	multi-exon	FALSE	canonical	3	2189	junction_3	223.361948415571	3291	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTGGTTCTTTCTTTCTTTC	8224	False	NA	-4	True	AATAAA	-21	NA	128329744	128326728	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128326903_128327927_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
transcript_60975.known	chrX	-	3160	5	FSM	ENSMUSG00000054737.12	ENSMUST00000115334.8	3160	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	3.67423461417477	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCATATTGTATTCCTTTAA	3236	False	NA	-5	True	TTTAAA	-1	NA	20928291	20895181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_20897892_20902575_20902711_20902866_20903012_20926741_20926797_20928176
transcript_60982.known	chrX	-	3251	9	FSM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	0	0	0	0	multi-exon	TRUE	canonical	3	241	junction_8	283.721694623446	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCGTTACTCCTCAGTTT	NA	False	NA	-8	True	AATAAA	-29	NA	23231321	23085509	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732_23227824_23231194
transcript_60984.nnic	chrX	-	3323	8	NNC	ENSMUSG00000036782.14	novel	3251	9	NA	NA	-3737	0	at_least_one_novel_splicesite	FALSE	canonical	3	222	junction_7	307.654590309938	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	-22	True	AATAAA	-15	NA	23185155	23085523	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23184851
transcript_60985.nic	chrX	-	3223	8	ISM	ENSMUSG00000036782.14	ENSMUST00000115313.8	3251	9	3385	14	3356	0	3prime_fragment	FALSE	canonical	3	772	junction_6	153.107671864193	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTGCTCTGTGCCATGCCG	NA	False	NA	-22	True	AATAAA	-15	NA	23227936	23085523	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_23087092_23094812_23094927_23101464_23102261_23113599_23113797_23114350_23114484_23127673_23127813_23181368_23181441_23227732
transcript_60986.known	chrX	+	4002	21	FSM	ENSMUSG00000036769.15	ENSMUST00000101670.3	4002	21	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	11.664475984801	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAGATTTACAATCTCTACA	NA	False	NA	NA	False	AATAAA	-24	NA	23559334	23672264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_23559509_23559663_23559779_23598556_23598591_23616144_23616220_23622678_23623325_23624333_23624465_23625421_23625518_23627642_23627780_23628515_23628600_23636128_23636236_23644862_23645015_23647041_23647181_23649526_23649592_23654290_23654405_23662222_23662346_23666608_23666801_23666972_23667075_23667278_23667395_23668553_23668682_23670007_23670143_23671127
transcript_60987.known	chrX	+	4167	20	FSM	ENSMUSG00000036769.15	ENSMUST00000035766.13	4167	20	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_8	9.86248944541599	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAGAAAAATAAATGATTGTC	NA	False	NA	NA	False	ATTAAA	-12	NA	23559289	23672229	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_23559779_23598556_23598591_23616144_23616220_23622678_23623325_23624333_23624465_23625421_23625518_23627642_23627780_23628515_23628600_23636128_23636236_23644862_23645015_23647041_23647181_23649526_23649592_23654290_23654405_23662222_23662346_23666608_23666801_23666972_23667075_23667278_23667395_23668553_23668682_23670007_23670143_23671127
transcript_60990.known	chrX	-	924	9	FSM	ENSMUSG00000080725.10	ENSMUST00000119231.8	924	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGAGTTTGAAAGGCTCTTT	NA	False	NA	NA	False	AATAAA	-32	NA	26890997	26868042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_26868234_26868552_26868652_26871097_26871180_26879377_26879442_26879753_26879880_26883015_26883051_26883589_26883657_26889261_26889385_26890860
transcript_60992.nnic	chrX	-	609	6	NNC	ENSMUSG00000095887.8	novel	907	9	NA	NA	7927	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	1.2	5	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTTGTCTCCTATGAAACA	NA	False	NA	NA	False	AATAAA	-14	NA	28725570	28712236	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_28712411_28712729_28712829_28715278_28715361_28723560_28723625_28723933_28724060_28725506
transcript_60993.nnic	chrX	+	626	6	NNC	ENSMUSG00000073255.11	novel	864	9	NA	NA	7929	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.8262252939418	3	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	30088384	30101764	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_30088449_30089923_30090050_30090361_30090426_30098624_30098707_30101155_30101255_30101573
transcript_60996.known	chrX	+	928	9	FSM	ENSMUSG00000073245.11	ENSMUST00000101645.10	928	9	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	3.49106001094224	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGAGTTTGAAAGGCTCTT	NA	False	NA	NA	False	AATAAA	-31	NA	34667835	34690746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_34667977_34669420_34669544_34675151_34675219_34675757_34675793_34678902_34679029_34679340_34679405_34687606_34687689_34690137_34690237_34690555
transcript_60997.known	chrX	+	3712	11	FSM	ENSMUSG00000017057.10	ENSMUST00000033418.8	3712	11	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_2	4.27083130081252	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAATGCTTTTTTTTTTGGTC	NA	False	NA	NA	False	AATAAA	-24	NA	35375762	35434912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_35375929_35390297_35390438_35394256_35394396_35396616_35396738_35404865_35405051_35407663_35407816_35412302_35412351_35412631_35412765_35415670_35415768_35419195_35419281_35432466
transcript_60999.known	chrX	+	2181	5	FSM	ENSMUSG00000036699.13	ENSMUST00000115258.9	2181	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.433012701892219	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATCTACTTTAATGTCTC	NA	False	NA	NA	False	AATAAA	-17	NA	35459556	35462803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_35459666_35459756_35459812_35460161_35460221_35460431_35460560_35460973
transcript_61000.known	chrX	+	2089	4	FSM	ENSMUSG00000036699.13	ENSMUST00000048067.10	2089	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAATGTCTCTGTGGTAT	NA	False	NA	NA	False	AATAAA	-25	NA	35459598	35462811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_35459666_35460164_35460221_35460431_35460560_35460973
transcript_61001.known	chrX	+	1857	3	FSM	ENSMUSG00000006373.11	ENSMUST00000073339.7	1857	3	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_1	42	655	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATAGTGAGGCTTTCATTTT	1668	False	NA	NA	False	AATAAA	-15	NA	35861858	35869732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_35862268_35865773_35865930_35868440
transcript_61002.known	chrX	-	1370	6	FSM	ENSMUSG00000059708.13	ENSMUST00000133980.2	1370	6	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	11.6687617166519	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	ACAAAGAAATTAAAAAACCA	NA	False	NA	NA	False	NA	NA	NA	35908749	35875531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_35876318_35877907_35877977_35878338_35878574_35882255_35882387_35900125_35900228_35908702
transcript_61004.nic	chrX	-	671	4	ISM	ENSMUSG00000059708.13	ENSMUST00000133980.2	1370	6	-360	3011	-61	-3011	5prime_fragment	FALSE	canonical	3	34	junction_2	5.71547606649408	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAAAGAGAAAGAAGGCCAG	NA	False	NA	NA	False	NA	NA	NA	35909109	35878542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_35878574_35882255_35882387_35900125_35900228_35908702
transcript_61006.nic	chrX	-	608	3	ISM	ENSMUSG00000059708.13	ENSMUST00000133980.2	1370	6	-360	6756	-61	-6756	5prime_fragment	FALSE	canonical	3	34	junction_1	5.5	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAGAAGAGAGAAGAGGA	NA	False	NA	-32	True	NA	NA	NA	35909109	35882287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_35882387_35900125_35900228_35908702
transcript_61008.known	chrX	+	1111	5	FSM	ENSMUSG00000037636.7	ENSMUST00000047655.7	1111	5	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	2.69258240356725	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGCTGACTAGAACTAC	NA	False	NA	NA	False	AAAACA	-13	NA	36007311	36040855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36007672_36015785_36016028_36021420_36021594_36039134_36039270_36040654
transcript_61013.known	chrX	+	1240	4	FSM	ENSMUSG00000016319.4	ENSMUST00000016463.4	1240	4	0	0	0	0	multi-exon	FALSE	canonical	3	11014	junction_3	650.055895032625	2590	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTTGTTCGTTGTTTGTTT	NA	False	NA	29	True	AATAAA	-31	NA	36059303	36062460	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36059495_36060495_36060983_36061388_36061530_36062039
transcript_61014.nnic	chrX	-	1265	7	NIC	ENSMUSG00000006423.16	novel	678	3	NA	NA	10	8969	combination_of_known_splicesites	FALSE	canonical	3	30	junction_1	75.5389891968968	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTAAGAGCTGTTTTTGCTT	NA	False	NA	NA	False	NA	NA	NA	36127881	36078420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_36078984_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
transcript_61018.known	chrX	-	3340	7	FSM	ENSMUSG00000006423.16	ENSMUST00000115248.10	3340	7	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	34.0999348321306	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTTGTTTTGATCATTT	NA	False	NA	NA	False	AATAAA	-28	NA	36127899	36112195	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_36114816_36116291_36116385_36116982_36117073_36117935_36118075_36120504_36120547_36127276_36127395_36127661
transcript_61022.known	chrX	-	4673	11	FSM	ENSMUSG00000050379.16	ENSMUST00000053456.11	4673	11	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	18.537529500988	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACGTGTGTGTGGTGTTCT	NA	False	NA	NA	False	ATTAAA	-14	NA	36253309	36177098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_36180199_36184021_36184067_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
transcript_61024.known	chrX	-	3457	10	FSM	ENSMUSG00000050379.16	ENSMUST00000060474.14	3457	10	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_1	15.297865581774	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAAATAAATAAATA	NA	False	NA	NA	False	NA	NA	NA	36253309	36174978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_36176908_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
transcript_61026.nnic	chrX	-	2114	10	NIC	ENSMUSG00000050379.16	novel	4673	11	NA	NA	-37	-801	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	11.2940495640649	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTAGAGTCTTGATTCATA	NA	False	NA	NA	False	AATAAA	-18	NA	36253181	36179484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_36180199_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205707_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
transcript_61027.nnic	chrX	-	2159	10	NNC	ENSMUSG00000050379.16	novel	4673	11	NA	NA	56	-801	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_5	16.9538225414044	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTAGAGTCTTGATTCATA	NA	False	NA	NA	False	AATAAA	-18	NA	36253253	36179484	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_36180199_36186492_36186684_36190434_36190568_36193751_36193921_36198036_36198134_36205734_36205870_36210220_36210408_36230248_36230445_36238715_36238831_36253031
transcript_61033.known	chrX	-	612	3	FSM	ENSMUSG00000079641.4	ENSMUST00000115231.4	612	3	0	0	0	0	multi-exon	FALSE	canonical	3	12849	junction_1	35	17714	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAGACCCGATAAGGCTTC	NA	False	NA	-5	True	TATAAA	-17	NA	36349055	36346172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_36346403_36347637_36347742_36348777
transcript_61038.nic	chrX	-	2547	11	NIC	ENSMUSG00000036572.17	novel	2344	10	NA	NA	-164	0	combination_of_known_junctions	FALSE	canonical	3	132	junction_3	55.9360348970143	155	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGTTTATTTATTCAAG	NA	False	NA	-1	True	AATAAA	-24	NA	36374139	36355330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_36356315_36359174_36359476_36360510_36360672_36362718_36362758_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
transcript_6104.known	chr10	-	496	5	FSM	ENSMUSG00000090841.3	ENSMUST00000220307.2	496	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	1076.89228802142	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTATCCCGAGTCTGTTCCT	8245	False	NA	NA	False	NA	NA	NA	128329723	128326865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128326903_128327927_128328006_128328097_128328405_128329407_128329436_128329677
transcript_61042.known	chrX	-	2344	10	FSM	ENSMUSG00000036572.17	ENSMUST00000076265.13	2344	10	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_3	69.0213779729436	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGCGTTTATTTATTCAAG	NA	False	NA	-1	True	AATAAA	-24	NA	36373975	36355330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_36356315_36359174_36359476_36360510_36360672_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
transcript_61050.known	chrX	-	2553	8	FSM	ENSMUSG00000036572.17	ENSMUST00000133481.2	2553	8	0	0	0	0	multi-exon	FALSE	canonical	3	159	junction_1	43.5576090496534	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAGAAAAACAAAGTAACA	NA	False	NA	NA	False	NA	NA	NA	36373975	36361102	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_36362758_36363159_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
transcript_61052.nic	chrX	-	795	7	ISM	ENSMUSG00000036572.17	ENSMUST00000133481.2	2553	8	-19	2179	-19	-2179	5prime_fragment	FALSE	canonical	3	185	junction_1	36.3061825160521	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAGAAGAAGAGAGAAGAAAA	NA	False	NA	-6	True	NA	NA	NA	36373994	36363281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_36363343_36363745_36363790_36365679_36365791_36368081_36368181_36372567_36372675_36372800_36372908_36373728
transcript_61056.known	chrX	+	4230	9	FSM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	0	0	0	0	multi-exon	TRUE	canonical	3	360	junction_3	33.4381425171914	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATTTTTAATGTGTGGATT	NA	False	NA	24	True	AATAAA	-24	NA	36390447	36414399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404_36400546_36403329_36403394_36405290_36405401_36405489_36405566_36406557_36406708_36411443
transcript_61058.nic	chrX	+	957	5	ISM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	-43	11030	-43	-2153	5prime_fragment	FALSE	canonical	3	360	junction_3	30.7520324531567	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GGACAAGAAAAAGAAACGAA	NA	False	NA	NA	False	NA	NA	NA	36390404	36403369	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404_36400546_36403329
transcript_61059.nic	chrX	+	831	4	ISM	ENSMUSG00000016409.5	ENSMUST00000016553.5	4230	9	-43	13940	-43	-5063	5prime_fragment	FALSE	canonical	3	360	junction_3	31.947874212014	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAGAAAGAAAAAGTCATCTA	NA	False	NA	NA	False	AAGAAA	-39	NA	36390404	36400459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_36391029_36394630_36394712_36400164_36400236_36400404
transcript_6106.known	chr10	-	1668	5	FSM	ENSMUSG00000090841.3	ENSMUST00000217733.2	1668	5	0	0	0	0	multi-exon	FALSE	canonical	3	2189	junction_2	245.142305610435	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTCTTTCTTTCTTT	8245	False	NA	-5	True	AATAAA	-20	NA	128329723	128326729	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128328006_128328097_128328272_128328470_128328615_128329407_128329436_128329677
transcript_61060.known	chrX	-	419	3	FSM	ENSMUSG00000016427.8	ENSMUST00000016571.8	419	3	0	0	0	0	multi-exon	FALSE	canonical	3	2951	junction_1	110	1863	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATTTTTATTTTTATGAA	2312	False	NA	-1	True	AATAAA	-20	NA	36454816	36451240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_36451395_36453526_36453617_36454641
transcript_61061.known	chrX	+	1223	1	FSM	ENSMUSG00000036537.7	ENSMUST00000046433.7	1223	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	81	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTCTTTCTTTCTTTCT	NA	False	NA	21	True	AATAAA	-21	NA	36454897	36456120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36454900_36456100
transcript_61062.known	chrX	-	817	4	FSM	ENSMUSG00000073243.3	ENSMUST00000101636.3	817	4	0	0	0	0	multi-exon	TRUE	canonical	3	60	junction_3	3.74165738677394	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGCAAATTGAACAAATTTA	NA	False	NA	NA	False	ATTAAA	-12	NA	36474694	36473000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_36473184_36473576_36473674_36473912_36474226_36474470
transcript_61063.nic	chrX	-	853	4	ISM	ENSMUSG00000071773.5	ENSMUST00000115210.2	883	5	3880	0	3880	0	3prime_fragment	FALSE	canonical	3	106	junction_3	6.34209919681348	95	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGTGAATTCTCGACATGT	NA	False	NA	-23	True	AATAAA	-1	NA	36482031	36477456	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_36477701_36479202_36479249_36481305_36481649_36481811
transcript_61064.nnic	chrX	-	820	3	NIC	ENSMUSG00000071773.5	novel	883	5	NA	NA	3880	13	combination_of_known_splicesites	FALSE	canonical	1	5	junction_1	50.5	4	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATGTTTATTCATGTGTC	NA	False	NA	-10	True	AATAAA	-14	NA	36482031	36477443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_36477701_36481305_36481649_36481811
transcript_61065.known	chrX	+	735	5	FSM	ENSMUSG00000051827.12	ENSMUST00000173650.2	735	5	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_3	65.4618209340376	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTAGACAGACGATGTTGTG	NA	False	NA	NA	False	NA	NA	NA	36508650	36513252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36508740_36508901_36509314_36510828_36510875_36511141_36511191_36513113
transcript_61066.known	chrX	+	795	4	FSM	ENSMUSG00000051827.12	ENSMUST00000063340.12	795	4	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	56.8174464598878	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATACATTTGTTTTGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	36508628	36513339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36508740_36508901_36509314_36510828_36510875_36513113
transcript_61067.known	chrX	+	1053	6	FSM	ENSMUSG00000071772.14	ENSMUST00000115203.10	1053	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCCCATGTGCCTTTTGA	NA	False	NA	NA	False	AATATA	-2	NA	36513571	36522636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36513634_36518187_36518337_36518521_36518712_36518961_36519332_36521207_36521254_36522400
transcript_61069.known	chrX	+	799	4	FSM	ENSMUSG00000079638.9	ENSMUST00000115191.7	799	4	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_3	23.6126143312331	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36593719	36598459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36593831_36593992_36594405_36595944_36595991_36598229
transcript_61070.nnic	chrX	+	730	4	NNC	ENSMUSG00000079638.9	novel	799	4	NA	NA	-12	2	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_3	29.4392028877595	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTTGTGCTTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	36593707	36598461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_36593831_36593992_36594405_36595944_36595991_36598312
transcript_61071.nic	chrX	+	969	3	NIC	ENSMUSG00000079638.9	novel	799	4	NA	NA	-8	0	intron_retention	FALSE	canonical	3	16	junction_2	18.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36593711	36598459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_36594405_36595944_36595991_36598229
transcript_61073.known	chrX	+	720	5	FSM	ENSMUSG00000079637.11	ENSMUST00000184688.8	720	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	22.1585198061603	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGCCAGACGATGTTTTG	NA	False	NA	NA	False	NA	NA	NA	36635332	36639941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36635407_36635568_36635981_36637508_36637555_36637822_36637872_36639802
transcript_61074.known	chrX	+	762	4	FSM	ENSMUSG00000079637.11	ENSMUST00000115190.11	762	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_3	17.9133717900592	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36635332	36640032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36635407_36635568_36635981_36637508_36637555_36639802
transcript_61077.nnic	chrX	+	767	3	NIC	ENSMUSG00000095698.3	novel	685	4	NA	NA	-37	91	combination_of_known_splicesites	FALSE	canonical	1	1	junction_2	8.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	6852	False	NA	NA	False	AATAAA	-16	NA	36675043	36679367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_36675169_36675331_36675744_36679137
transcript_61078.known	chrX	+	735	5	FSM	ENSMUSG00000096788.9	ENSMUST00000184746.2	735	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	31.4523449046331	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATAGCCAGACGATGTTTTC	NA	False	NA	NA	False	NA	NA	NA	36712126	36723375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36712216_36712377_36712790_36720942_36720989_36721255_36721305_36723236
transcript_61079.known	chrX	+	799	4	FSM	ENSMUSG00000096788.9	ENSMUST00000072167.10	799	4	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	24.1246761636296	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	NA	False	NA	NA	False	AATAAA	-16	NA	36712104	36723466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36712216_36712377_36712790_36720942_36720989_36723236
transcript_6108.known	chr10	-	1026	7	FSM	ENSMUSG00000039824.5	ENSMUST00000026428.4	1026	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.63299316185545	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCGGTTTCCGACAGTTTT	3414	False	NA	-10	True	AATAAA	-14	NA	128334554	128330025	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128330353_128330458_128330537_128330922_128331097_128332121_128332266_128332482_128332511_128333069_128333287_128334496
transcript_61080.nnic	chrX	+	741	4	NNC	ENSMUSG00000096788.9	novel	799	4	NA	NA	-23	2	at_least_one_novel_splicesite	FALSE	canonical	1	16	junction_3	23.6690139681023	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTTGTTTTGTGCTTCTTC	NA	False	NA	NA	False	AATAAA	-18	NA	36712081	36723468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_36712216_36712377_36712790_36720942_36720989_36723319
transcript_61082.known	chrX	+	978	4	FSM	ENSMUSG00000071770.6	ENSMUST00000089075.6	978	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTCTTTTTGATTA	NA	False	NA	NA	False	AATAAA	-21	NA	36739064	36743936	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36739354_36739543_36739950_36742342_36742389_36743699
transcript_61083.known	chrX	+	799	4	FSM	ENSMUSG00000095741.4	ENSMUST00000115173.5	799	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	1.69967317119759	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATATTTGTTTTGTGCTTCT	9346	False	NA	NA	False	AATAAA	-16	NA	36753057	36757816	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36753169_36753330_36753743_36755287_36755334_36757586
transcript_61084.known	chrX	-	795	4	FSM	ENSMUSG00000079629.6	ENSMUST00000115169.4	795	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	7.03957069398096	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATATATTTGTTTTGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	36825123	36820769	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_36820996_36822809_36822856_36824438_36824851_36825012
transcript_61085.nic	chrX	-	774	3	NIC	ENSMUSG00000079629.6	novel	795	4	NA	NA	-23	0	combination_of_known_junctions	FALSE	canonical	2	7	junction_1	7.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATATATTTGTTTTGTGCTT	NA	False	NA	NA	False	AATAAA	-14	NA	36825146	36820767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_36820996_36824438_36824851_36825012
transcript_61086.nic	chrX	-	1361	3	ISM	ENSMUSG00000079629.6	ENSMUST00000115169.4	795	4	-404	0	-404	0	intron_retention	FALSE	canonical	2	5	junction_2	5.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATATATTTGTTTTGTGC	NA	False	NA	NA	False	AATAAA	-12	NA	36825527	36820769	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_36820996_36822809_36822856_36824438
transcript_61087.known	chrX	-	979	4	FSM	ENSMUSG00000079628.4	ENSMUST00000115166.3	979	4	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	1.24721912892465	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGTGTCTTTTTGATTA	6368	False	NA	NA	False	AATAAA	-21	NA	36832980	36828152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_36828390_36829677_36829724_36832090_36832497_36832690
transcript_61089.known	chrX	-	779	4	FSM	ENSMUSG00000079627.3	ENSMUST00000115162.2	779	4	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_3	11.2644968324772	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAATACATTTGTTTTGTGC	9229	False	NA	NA	False	AATAAA	-12	NA	36854930	36850649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_36850876_36852672_36852719_36854261_36854674_36854835
transcript_6109.known	chr10	-	3981	31	FSM	ENSMUSG00000025366.9	ENSMUST00000026427.8	3981	31	0	0	0	0	multi-exon	FALSE	canonical	3	144	junction_22	28.253790306199	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTGGTGCACTGTGTGAA	8319	False	NA	NA	False	AATATA	-21	NA	128361739	128345833	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128346529_128346848_128346899_128347334_128347441_128347523_128347656_128347737_128347837_128347926_128348088_128348195_128348334_128351554_128351642_128351733_128351806_128352013_128352110_128352227_128352318_128352401_128352451_128352544_128352628_128352822_128353000_128353117_128353265_128353483_128353634_128354796_128354884_128355010_128355083_128355296_128355390_128355467_128355555_128355657_128355707_128356141_128356225_128356512_128356690_128356775_128356900_128357482_128357539_128357695_128357786_128357923_128357997_128358117_128358192_128358289_128358425_128358942_128358985_128361332
transcript_61094.known	chrX	+	957	6	FSM	ENSMUSG00000095180.11	ENSMUST00000179626.3	957	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1594.13919091151	314	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTAGTGATTCGAGTAA	8630	False	NA	17	True	ATTAAA	-14	NA	36891760	36897308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36891896_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
transcript_61095.known	chrX	+	868	6	FSM	ENSMUSG00000095180.11	ENSMUST00000239523.1	868	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	1588.16578479704	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTAGTGATTCGAGTAATAT	9192	False	NA	20	True	ATTAAA	-17	NA	36892322	36897311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36892366_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
transcript_61098.known	chrX	+	893	6	FSM	ENSMUSG00000095180.11	ENSMUST00000184866.10	893	6	0	0	0	0	multi-exon	FALSE	canonical	3	2792	junction_1	493.533626007388	3951	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTTAGTGATTCGAGTAA	8505	False	NA	17	True	ATTAAA	-14	NA	36891635	36897308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36891707_36892583_36892653_36893274_36893357_36893532_36893891_36894500_36894547_36897041
transcript_61099.known	chrX	+	1010	4	FSM	ENSMUSG00000006200.4	ENSMUST00000006362.4	1010	4	0	0	0	0	multi-exon	FALSE	canonical	3	92	junction_1	47.588514020367	231	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTGGCTCCATTGTCTTGG	NA	False	NA	14	True	AATAAA	-18	NA	36915786	36918734	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_36916057_36916242_36916703_36917291_36917338_36918500
transcript_611.known	chr1	-	1231	7	FSM	ENSMUSG00000026088.16	ENSMUST00000027257.10	1231	7	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_5	18.2543754267908	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGGATCCACTCACCTG	NA	False	NA	0	True	AATAAA	-19	NA	37929492	37917968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_37918445_37918640_37918702_37920013_37920130_37920779_37920867_37921642_37921780_37924295_37924398_37929240
transcript_6110.known	chr10	-	3721	3	FSM	ENSMUSG00000039810.12	ENSMUST00000040572.10	3721	3	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_2	17	60	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATTGTTAGGAATATTATTA	NA	False	NA	NA	False	ATTAAA	-15	NA	128383643	128377831	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128381408_128382696_128382761_128383562
transcript_61102.known	chrX	-	882	4	FSM	ENSMUSG00000068048.9	ENSMUST00000089062.8	882	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_2	21.013223349966	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGTTGGCTCCATTATCTT	1078	False	NA	-1	True	AATAAA	-16	NA	36990647	36987973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_36988177_36989156_36989203_36989828_36990289_36990474
transcript_61103.known	chrX	+	876	3	FSM	ENSMUSG00000050197.6	ENSMUST00000152730.4	876	3	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_1	2	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTTCTTTAATTTTATGTGC	NA	False	NA	2	True	AATAAA	-15	NA	37210095	37218844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_37210700_37211950_37211997_37218618
transcript_61106.known	chrX	-	1769	9	FSM	ENSMUSG00000016534.16	ENSMUST00000016678.14	1769	9	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	278.250982702667	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTCTGTTTCAATTTGTAA	NA	False	NA	-1	True	AATAAA	-18	NA	37545331	37493938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_37494449_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
transcript_61108.known	chrX	-	3604	9	FSM	ENSMUSG00000016534.16	ENSMUST00000061755.9	3604	9	0	0	0	0	multi-exon	FALSE	canonical	3	893	junction_3	45.9604109533411	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGAAATTTGCTCACATTTTT	NA	False	NA	-22	True	AATAAA	-19	NA	37545331	37508383	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_37510729_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
transcript_6111.known	chr10	-	437	4	FSM	ENSMUSG00000093674.8	ENSMUST00000176683.8	437	4	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_3	9065.73447413697	2414	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128385031	128383982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128384299_128384526_128384550_128384817_128384841_128384956
transcript_61110.known	chrX	-	2184	9	FSM	ENSMUSG00000016534.16	ENSMUST00000074913.12	2184	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	322.044615503815	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAATACTGTTCGTGTTTTT	NA	False	NA	NA	False	ATTAAA	-26	NA	37545331	37490233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_37491159_37513143_37513309_37514239_37514304_37519794_37519918_37520726_37520939_37524272_37524432_37529007_37529222_37530901_37531018_37545125
transcript_61112.known	chrX	-	3090	23	FSM	ENSMUSG00000031095.16	ENSMUST00000050083.6	3090	23	0	0	0	0	multi-exon	FALSE	non_canonical	3	112	junction_22	288.723912992818	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCATGTTATTTGACTTCT	NA	False	NA	-5	True	GATAAA	-14	NA	37665060	37622450	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37664956
transcript_61113.known	chrX	-	3344	23	FSM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	0	0	0	0	multi-exon	FALSE	non_canonical	3	600	junction_22	211.248653964121	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAGTCATTTAAAGATACT	NA	False	NA	-28	True	AATAAA	-20	NA	37665073	37622150	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653809_37653984_37661280_37661356_37665015
transcript_6112.known	chr10	-	544	3	FSM	ENSMUSG00000093674.8	ENSMUST00000177163.8	544	3	0	0	0	0	multi-exon	FALSE	canonical	3	15318	junction_2	3514.5	3983	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTACGTGTTTTTTT	NA	False	NA	-18	True	AATAAA	-29	NA	128385022	128383982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128384299_128384526_128384550_128384817
transcript_61120.nnic	chrX	-	2888	21	NNC	ENSMUSG00000031095.16	novel	3344	23	NA	NA	-253	0	at_least_one_novel_splicesite	FALSE	non_canonical	3	44	junction_20	295.848609934203	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTATTTGACTTCTTTTA	7902	False	NA	-1	True	GATAAA	-18	NA	37653792	37622446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_37622606_37625998_37626152_37627830_37628004_37628876_37628983_37629813_37629928_37630927_37631036_37632208_37632295_37633625_37633737_37634372_37634478_37635568_37635762_37636723_37636843_37637305_37637374_37638085_37638169_37638464_37638555_37638713_37638877_37639742_37639817_37640530_37640601_37641258_37641363_37650485_37650602_37652539_37653086_37653645
transcript_61123.nic	chrX	-	809	2	ISM	ENSMUSG00000031095.16	ENSMUST00000050083.6	3090	23	-16	38216	-3	-38216	5prime_fragment	FALSE	canonical	3	112	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCTCAGCATGCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	37665076	37660666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_37661356_37664956
transcript_61124.nic	chrX	-	758	2	ISM	ENSMUSG00000031095.16	ENSMUST00000115118.8	3344	23	-11	38516	-11	-38216	5prime_fragment	FALSE	canonical	3	600	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCCTCAGCATGCTTTAAA	NA	False	NA	NA	False	NA	NA	NA	37665084	37660666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_37661356_37665015
transcript_6113.known	chr10	-	695	3	FSM	ENSMUSG00000093674.8	ENSMUST00000176184.2	695	3	0	0	0	0	multi-exon	FALSE	canonical	3	590	junction_2	10878.5	207	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATCAAACTGCTGTTACGTG	NA	False	NA	-25	True	AATAAA	-22	NA	128385028	128383989	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128384299_128384526_128384841_128384956
transcript_61131.nnic	chrX	+	1018	7	NNC	ENSMUSG00000000355.14	novel	783	6	NA	NA	-14	98	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	277.22538965013	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAGATGACTCAATGTCCTAT	NA	False	NA	10	True	ATTAAA	-23	NA	37689440	37702401	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_37689656_37690228_37690275_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
transcript_61134.known	chrX	+	783	6	FSM	ENSMUSG00000000355.14	ENSMUST00000000365.3	783	6	0	0	0	0	multi-exon	FALSE	canonical	3	489	junction_1	58.4486099064811	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTAGTTTCAGAAAT	NA	False	NA	17	True	AATAAA	-19	NA	37689531	37702303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_37689656_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
transcript_61137.nic	chrX	+	1387	6	NIC	ENSMUSG00000000355.14	novel	783	6	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	30	junction_1	233.438985604376	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTAGTTTCAGAAAT	NA	False	NA	17	True	AATAAA	-19	NA	37689546	37702303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_37690275_37690805_37690959_37691452_37691551_37694815_37694950_37700642_37700711_37702097
transcript_6114.known	chr10	-	523	2	FSM	ENSMUSG00000093674.8	ENSMUST00000176966.2	523	2	0	0	0	0	multi-exon	FALSE	canonical	3	7075	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GCAAAGGAAAAAAAAAAAAC	NA	False	NA	NA	False	NA	NA	NA	128384981	128384344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128384843_128384956
transcript_61141.nic	chrX	+	771	5	NIC	ENSMUSG00000000355.14	novel	783	6	NA	NA	-64	0	combination_of_known_junctions	FALSE	canonical	3	42	junction_1	253.564094461341	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCTGTTAGTTTCAGAAAT	NA	False	NA	17	True	AATAAA	-19	NA	37689390	37702303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_37689656_37691452_37691551_37694815_37694950_37700642_37700711_37702097
transcript_61146.known	chrX	-	1449	2	FSM	ENSMUSG00000048970.10	ENSMUST00000058265.8	1449	2	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_1	0	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTCTATTACTTTTCTGT	NA	False	NA	-2	True	ATTAAA	-18	NA	37723964	37719661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_37721001_37723854
transcript_61149.nic	chrX	-	2825	23	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	-38	32192	-38	-3775	5prime_fragment	FALSE	canonical	3	149	junction_4	23.7647300993345	30	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTTTTGATGTAGCGAT	NA	False	NA	NA	False	AATAAA	-43	NA	41000816	40916059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_40916336_40919569_40919735_40922185_40922366_40923974_40924093_40925377_40925475_40926991_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
transcript_61153.nic	chrX	-	1937	18	ISM	ENSMUSG00000037475.16	ENSMUST00000047037.15	7622	39	-38	43176	-38	-14759	5prime_fragment	FALSE	canonical	3	156	junction_1	21.7736070828405	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAGGAAAGAATGAAACA	NA	False	NA	NA	False	NA	NA	NA	41000816	40927043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_40927073_40927460_40927555_40928426_40928512_40932903_40933006_40933101_40933233_40933640_40933683_40945610_40945807_40946940_40947114_40947675_40947832_40949001_40949095_40952905_40953073_40961166_40961301_40961441_40961564_40962758_40962830_40968762_40968815_40970785_40970878_40986668_40986728_41000677
transcript_61158.known	chrX	+	487	3	FSM	ENSMUSG00000025860.16	ENSMUST00000126375.2	487	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_2	14.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTATACCGGTGAAGGAGACA	NA	False	NA	NA	False	NA	NA	NA	41156757	41183433	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_41156934_41157233_41157360_41183248
transcript_61159.known	chrX	-	3509	2	FSM	ENSMUSG00000045284.10	ENSMUST00000060481.9	3509	2	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACCTCTGTTTTTCTTTA	NA	False	NA	-5	True	AATAAA	-40	NA	43879074	43875446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_43877171_43877289
transcript_61161.known	chrX	-	3495	2	FSM	ENSMUSG00000045284.10	ENSMUST00000115056.2	3495	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCACCTCTGTTTTTCTTTA	NA	False	NA	-5	True	AATAAA	-40	NA	43879038	43875446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_43877171_43877267
transcript_61162.known	chrX	+	5253	24	FSM	ENSMUSG00000001173.16	ENSMUST00000001202.15	5253	24	0	0	0	0	multi-exon	TRUE	non_canonical	0	0	junction_1	28.8803018275155	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATTGTGATCTGACTGAG	NA	False	NA	17	True	AATAAA	-18	NA	47001263	47054745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_47001569_47001845_47001926_47005351_47005432_47009037_47009077_47019247_47019359_47019774_47019862_47020452_47020574_47020660_47020823_47022250_47022353_47023721_47023837_47024966_47025084_47025177_47025366_47027175_47027288_47029985_47030096_47032382_47032519_47035879_47035991_47036583_47036750_47037001_47037238_47045086_47045111_47049329_47049447_47050253_47050339_47050956_47051085_47052017_47052130_47052336
transcript_61165.known	chrX	+	3498	21	FSM	ENSMUSG00000037005.17	ENSMUST00000077775.11	3498	21	0	0	0	0	multi-exon	TRUE	canonical	3	24	junction_11	7.3109506905737	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTCTGGTTTTGC	NA	False	NA	NA	False	AAAACA	-12	NA	47197601	47225858	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_47198072_47200601_47200676_47202553_47202665_47204804_47204869_47205828_47205934_47206154_47206242_47207211_47207359_47210677_47210780_47211405_47211488_47211764_47211961_47212715_47212806_47213492_47213603_47214221_47214300_47215745_47215818_47217601_47217663_47218923_47218994_47219555_47219661_47220024_47220085_47220774_47220852_47223961_47224052_47224611
transcript_61167.nic	chrX	+	1015	7	ISM	ENSMUSG00000037005.17	ENSMUST00000114998.8	3017	20	-22	15415	-22	6456	5prime_fragment	FALSE	canonical	3	34	junction_5	7.51480021173033	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGAGATGCTTGGTTAAAA	NA	False	NA	NA	False	NA	NA	NA	47197773	47207487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_47198072_47200601_47200676_47202553_47202665_47204804_47204869_47205828_47205934_47206154_47206242_47207211
transcript_61169.known	chrX	+	2677	8	FSM	ENSMUSG00000031101.7	ENSMUST00000033427.7	2677	8	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	1.30930734141595	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTACCGTCGCCTGTTTTCTT	NA	False	NA	NA	False	AATAAA	-17	NA	47235312	47250442	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_47235595_47243402_47243499_47243852_47244000_47246295_47246438_47247609_47247759_47247918_47248129_47248280_47248432_47248942
transcript_6117.known	chr10	-	2483	12	FSM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	0	0	0	0	multi-exon	FALSE	canonical	3	1853	junction_11	115.182428067554	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCACTGTTGTGTGTTCTCTT	8692	False	NA	-7	True	AATAAA	-12	NA	128401856	128393636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128394841_128394930_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
transcript_61171.known	chrX	+	2507	15	FSM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_8	49.1840047833705	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGACTACCTTCTGTATTA	NA	False	NA	20	True	AATAAA	-24	NA	47345738	47371330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677_47364066_47366098_47366497_47367243_47367438_47367544_47367645_47370938
transcript_61173.nic	chrX	+	1549	12	ISM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	-38	5144	-38	4225	5prime_fragment	FALSE	canonical	3	320	junction_8	29.8140241003768	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGTCCAGCAAAGGCTGTTG	NA	False	NA	NA	False	AAGAAA	-39	NA	47345700	47366186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566_47362691_47362775_47362854_47363677_47364066_47366098
transcript_61174.nnic	chrX	+	1462	10	NIC	ENSMUSG00000063785.13	novel	2507	15	NA	NA	-38	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_7	130.820015835536	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCGACTACCTTCTGTATTA	NA	False	NA	20	True	AATAAA	-24	NA	47345700	47371330	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47367243_47367438_47367544_47367645_47370938
transcript_61175.nic	chrX	+	975	9	ISM	ENSMUSG00000063785.13	ENSMUST00000080713.5	2507	15	-38	8660	-38	709	5prime_fragment	FALSE	canonical	3	320	junction_8	33.9484903935359	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGGAAAAAGCCAGAATGATG	NA	False	NA	NA	False	NA	NA	NA	47345700	47362670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_47345846_47347216_47347293_47348599_47348671_47349462_47349528_47351771_47351915_47352353_47352510_47361676_47361797_47361898_47361994_47362566
transcript_61178.known	chrX	-	2221	16	FSM	ENSMUSG00000036932.15	ENSMUST00000114945.9	2221	16	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_15	394.039704711199	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602436	47563820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47592459_47592591_47602112
transcript_61179.known	chrX	-	2237	16	FSM	ENSMUSG00000036932.15	ENSMUST00000037349.8	2237	16	0	0	0	0	multi-exon	FALSE	canonical	3	1039	junction_9	82.1482129378898	616	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTGGTTGTTTTATTTTAA	NA	False	NA	-1	True	ATTAAA	-16	NA	47602440	47563820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_47564066_47564439_47564637_47566576_47566702_47569001_47569145_47570841_47570983_47571598_47571688_47572031_47572140_47573403_47573513_47574334_47574412_47575022_47575108_47583615_47583707_47585956_47586088_47586210_47586336_47588648_47588749_47593686_47593830_47602112
transcript_61187.known	chrX	+	1158	2	FSM	ENSMUSG00000031104.3	ENSMUST00000033430.3	1158	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCACGTGGCTTTGTGTCTT	NA	False	NA	6	True	AATAAA	-14	NA	47608161	47619109	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_47608736_47618525
transcript_61192.known	chrX	-	4045	20	FSM	ENSMUSG00000036916.14	ENSMUST00000072292.12	4045	20	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_17	15.8598431908636	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGATTGCATCATCTAATACG	NA	False	NA	44	True	AATAAA	-22	NA	47683329	47630501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_47632167_47632281_47632319_47632461_47632581_47636141_47636205_47637434_47637573_47638928_47639237_47642854_47642987_47647145_47647293_47647919_47648021_47648543_47648702_47652558_47652780_47655584_47655695_47655825_47655991_47657997_47658104_47661158_47661293_47661622_47661689_47667256_47667407_47677579_47677627_47680549_47680639_47683240
transcript_61195.nic	chrX	+	1523	11	NIC	ENSMUSG00000031105.17	novel	1760	11	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_1	33.2180673730426	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	14	True	ATTAAA	-17	NA	47712290	47751171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_47712386_47712550_47712706_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
transcript_61197.known	chrX	+	1760	11	FSM	ENSMUSG00000031105.17	ENSMUST00000033431.14	1760	11	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	43.9708994677161	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	14	True	ATTAAA	-17	NA	47712454	47751171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_47712706_47712838_47713075_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
transcript_61198.known	chrX	+	1582	11	FSM	ENSMUSG00000031105.17	ENSMUST00000114936.8	1582	11	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_2	43.3798340245787	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTTGACTTTGTCTTCA	NA	False	NA	14	True	ATTAAA	-17	NA	47712641	47751171	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_47712706_47712838_47713084_47718128_47718223_47719765_47719914_47723633_47723729_47726266_47726353_47729111_47729208_47740806_47740932_47742243_47742380_47749565_47749647_47750759
transcript_61201.known	chrX	+	1747	6	FSM	ENSMUSG00000031107.7	ENSMUST00000033433.3	1747	6	0	0	0	0	multi-exon	FALSE	canonical	3	254	junction_1	50.9768574943572	245	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGGGCATTTGGTCCACTCA	NA	False	NA	NA	False	NA	NA	NA	47783880	47799600	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_47783998_47784196_47784313_47786277_47786330_47795181_47795312_47797766_47797951_47798452
transcript_61202.nic	chrX	+	575	5	ISM	ENSMUSG00000031107.7	ENSMUST00000033433.3	1747	6	17	1657	17	0	5prime_fragment	FALSE	canonical	3	254	junction_1	56.9753236059261	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAGGTAGCATATTAAA	NA	False	NA	-5	True	AAAAAG	-4	NA	47783897	47797943	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_47783998_47784196_47784313_47786277_47786330_47795181_47795312_47797766
transcript_61204.known	chrX	-	2122	21	FSM	ENSMUSG00000079606.2	ENSMUST00000114928.2	2122	21	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	2.37697286480094	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAAACCTCTATTCCTG	NA	False	NA	NA	False	ATTAAA	-10	NA	47966590	47930342	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_47930518_47931665_47931712_47933207_47933309_47933523_47933596_47934354_47934427_47935111_47935184_47942295_47942368_47943118_47943191_47943943_47944019_47944848_47944921_47945500_47945573_47946351_47946418_47947147_47947217_47961723_47961842_47962307_47962419_47963043_47963186_47964080_47964221_47964535_47964626_47965095_47965258_47965864_47965991_47966393
transcript_61206.known	chrX	-	3226	16	FSM	ENSMUSG00000031109.17	ENSMUST00000114918.9	3226	16	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_4	10.7695042700313	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACAGGGACTCCTCTGG	NA	False	NA	45	True	NA	NA	NA	48377119	48099334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_48100512_48102009_48102058_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375721_48375782_48376977
transcript_61207.known	chrX	-	3936	16	FSM	ENSMUSG00000031109.17	ENSMUST00000114914.8	3936	16	0	0	0	0	multi-exon	TRUE	canonical	2	12	junction_14	13.255774423079	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAAACCTTGCTTATTTT	NA	False	NA	NA	False	AATAAA	-24	NA	48377089	48098583	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_48100512_48102009_48102058_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375732_48375782_48376977
transcript_61213.known	chrX	-	3167	15	FSM	ENSMUSG00000031109.17	ENSMUST00000114912.8	3167	15	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_13	14.647560220329	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTGACAGGGACTCCTCTGG	NA	False	NA	45	True	NA	NA	NA	48377119	48099334	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_48100512_48102373_48102460_48107659_48107772_48111970_48112079_48114039_48114222_48129392_48129508_48140608_48140716_48142585_48142799_48145211_48145446_48151019_48151227_48158511_48158668_48169493_48169629_48257517_48257662_48375732_48375782_48376977
transcript_61216.known	chrX	-	968	6	FSM	ENSMUSG00000031109.17	ENSMUST00000137518.8	968	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	20.1395134002786	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAACCAACTGAGTGTTTT	NA	False	NA	NA	False	AATAAA	-35	NA	48377089	48154316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_48154678_48158511_48158668_48169493_48169629_48257517_48257662_48375721_48375782_48376977
transcript_61219.known	chrX	-	1761	5	FSM	ENSMUSG00000031111.17	ENSMUST00000114891.2	1761	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	1.08972473588517	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATATAGCTTTTTCTTGA	NA	False	NA	NA	False	NA	NA	NA	48886626	48881842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_48883069_48883368_48883651_48883999_48884027_48884155_48884285_48886529
transcript_61222.known	chrX	+	3639	12	FSM	ENSMUSG00000031112.11	ENSMUST00000033444.11	3639	12	0	0	0	0	multi-exon	TRUE	canonical	3	20	junction_11	5.29618605950164	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGATCCTCGATGTTTGTTT	NA	False	NA	NA	False	AATAAA	-13	NA	49929923	49981974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_49930424_49930555_49930713_49959132_49959364_49968365_49968423_49974465_49974575_49974663_49974822_49975527_49975714_49976737_49976887_49977892_49977987_49978565_49978629_49978709_49978847_49980176
transcript_61223.known	chrX	-	3545	3	FSM	ENSMUSG00000050029.8	ENSMUST00000053593.8	3545	3	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	4	28	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCAAACCAGTTATCATTTG	NA	False	NA	NA	False	ATTAAA	-25	NA	50106895	50092788	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_50095628_50103847_50104161_50106502
transcript_61226.known	chrX	-	2243	8	FSM	ENSMUSG00000036109.18	ENSMUST00000114876.9	2243	8	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_7	7.54848275064166	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGGAGAGTAGCCATTACATT	NA	False	NA	NA	False	AATAAA	-24	NA	50294867	50208956	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_50209896_50212693_50212789_50217797_50217949_50218981_50219219_50220305_50220498_50228080_50228246_50253294_50253542_50294650
transcript_61232.known	chrX	-	4649	7	FSM	ENSMUSG00000036109.18	ENSMUST00000114875.8	4649	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	9.88966913276453	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTTAAAAAAAAAAAAGAAAG	NA	False	NA	NA	False	NA	NA	NA	50294709	50206145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_50209896_50212693_50212789_50217797_50217949_50218981_50219219_50220305_50220498_50228080_50228246_50294650
transcript_61235.known	chrX	-	4120	8	FSM	ENSMUSG00000055780.11	ENSMUST00000069509.4	4120	8	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	4.17475405605784	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACTTGTATTAACTGGACAGA	NA	False	NA	NA	False	NA	NA	NA	50890021	50842835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_50846351_50854031_50854113_50882224_50882281_50885803_50885850_50886599_50886704_50887371_50887431_50889689_50889806_50889878
transcript_61239.nic	chrX	-	463	4	ISM	ENSMUSG00000055780.11	ENSMUST00000114869.8	4133	9	2	43810	2	-43810	intron_retention	FALSE	canonical	3	22	junction_3	2.86744175568088	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAACAGAACTGCAAG	NA	False	NA	NA	False	NA	NA	NA	50890108	50886645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_50886704_50887371_50887431_50889689_50889806_50889878
transcript_61242.nic	chrX	-	1543	5	NIC	ENSMUSG00000031118.9	novel	1454	4	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_3	35.6195171219375	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGTTGCTCCGTTTCA	NA	False	NA	-2	True	CATAAA	-17	NA	51061693	51057571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_51058747_51059091_51059163_51059359_51059477_51059858_51059953_51061607
transcript_61243.known	chrX	-	1454	4	FSM	ENSMUSG00000031118.9	ENSMUST00000033449.8	1454	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	37.249906785864	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGTTGCTCCGTTTCA	NA	False	NA	-2	True	CATAAA	-17	NA	51061649	51057571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_51058747_51059091_51059163_51059786_51059953_51061607
transcript_61244.nnic	chrX	-	1426	4	NIC	ENSMUSG00000031118.9	novel	1454	4	NA	NA	-44	0	combination_of_known_splicesites	FALSE	canonical	3	60	junction_2	10.4029910228848	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCTGTTGCTCCGTTTCA	NA	False	NA	-2	True	CATAAA	-17	NA	51061693	51057571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_51058747_51059091_51059163_51059858_51059953_51061607
transcript_61246.known	chrX	-	2651	9	FSM	ENSMUSG00000031119.5	ENSMUST00000033450.3	2651	9	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_5	29.8493613834534	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCTGGAAAATTTCCATT	NA	False	NA	-19	True	ATTAAA	-15	NA	51254129	51141897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_51142604_51142693_51142870_51143322_51143460_51145536_51145684_51145777_51145909_51151734_51151901_51163170_51163563_51180518_51180678_51253492
transcript_61248.known	chrX	-	2216	8	FSM	ENSMUSG00000055653.14	ENSMUST00000069360.14	2216	8	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_6	17.9398086582293	127	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGTTGGTCCTTTTTTAA	NA	False	NA	NA	False	AATAAA	-17	NA	51702798	51361302	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_51361832_51403713_51403874_51454598_51454720_51476985_51477112_51485949_51486084_51517316_51518012_51671673_51671836_51702509
transcript_61250.nic	chrX	-	882	2	ISM	ENSMUSG00000055653.14	ENSMUST00000114857.2	1880	5	-46	194777	-46	-194777	5prime_fragment	FALSE	canonical	3	258	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAAAGTGGATAGTATTAA	NA	False	NA	NA	False	AAGAAA	-3	NA	51702873	51671317	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_51671836_51702509
transcript_61251.known	chrX	-	408	1	FSM	ENSMUSG00000083621.2	ENSMUST00000119571.2	408	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3056	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTATGCCATATTTTCA	NA	False	NA	NA	False	AAAACA	-19	NA	51861626	51861218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_51861200_51861600
transcript_61252.known	chrX	+	1536	2	FSM	ENSMUSG00000073207.2	ENSMUST00000101588.2	1536	2	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_1	0	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAATATGCCTGTGATTC	NA	False	NA	NA	False	AATAAA	-23	NA	51880076	51888345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_51880203_51886935
transcript_61253.known	chrX	+	882	1	FSM	ENSMUSG00000081684.5	ENSMUST00000117295.2	882	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2194	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGGTTTTTATATGAGAAAAA	NA	False	NA	NA	False	NA	NA	NA	51987464	51988346	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_51987500_51988300
transcript_61254.known	chrX	+	4350	11	FSM	ENSMUSG00000025626.17	ENSMUST00000078944.13	4350	11	0	0	0	0	multi-exon	FALSE	canonical	3	199	junction_10	29.4423164849507	84	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGTGTCTGCTTTGTAA	NA	False	NA	17	True	AATAAA	-17	NA	52001142	52045820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_52001314_52005429_52005614_52006042_52006145_52020449_52020584_52020857_52020902_52029101_52029269_52029413_52029558_52031440_52031546_52034760_52034895_52042328_52042456_52042782
transcript_61255.known	chrX	+	3057	9	FSM	ENSMUSG00000025626.17	ENSMUST00000154864.4	3057	9	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	81.7778049045094	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAACTTCCAATAGTTTGAT	NA	False	NA	NA	False	ATTAAA	-17	NA	52001171	52044842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_52001314_52020449_52020584_52020857_52020902_52029101_52029269_52029413_52029558_52031440_52031546_52034760_52034895_52042328_52042456_52042782
transcript_61260.known	chrX	+	1289	9	FSM	ENSMUSG00000025630.9	ENSMUST00000026723.9	1289	9	0	0	0	0	multi-exon	FALSE	canonical	3	2155	junction_4	129.05328356923	1551	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCACTTTTTGAATTCTTT	NA	False	NA	12	True	AATAAA	-16	NA	52077013	52110536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_52077128_52087967_52088075_52090964_52091149_52097529_52097596_52101153_52101172_52105223_52105307_52108981_52109029_52109199_52109277_52109943
transcript_61267.nnic	chrX	-	3504	9	NNC	ENSMUSG00000036022.16	novel	3536	9	NA	NA	2637	0	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_8	24.9446261747896	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATCGTAAAAGTCTGCCT	NA	False	NA	-13	True	AATAAA	-24	NA	52355260	52332301	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_52335168_52342912_52343010_52347833_52347896_52348717_52348804_52349071_52349174_52349422_52349478_52349566_52349611_52354917_52354997_52355147
transcript_61268.known	chrX	-	3536	9	FSM	ENSMUSG00000036022.16	ENSMUST00000114838.8	3536	9	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_3	8.54034542626936	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGATCGTAAAAGTCTGCCT	NA	False	NA	-13	True	AATAAA	-24	NA	52357897	52332301	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_52335168_52342912_52343010_52347833_52347896_52348717_52348804_52349071_52349174_52349422_52349478_52349566_52349611_52354917_52354997_52357752
transcript_61272.nnic	chrX	-	1953	7	NNC	ENSMUSG00000023074.12	novel	1773	6	NA	NA	-57	0	at_least_one_novel_splicesite	FALSE	canonical	1	3	junction_2	42.1056871323683	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCCCCCTAAGCACAACGACT	NA	False	NA	NA	False	AATAAA	-20	NA	52459436	52433884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_52434867_52436580_52436743_52440547_52440671_52444532_52444751_52446286_52446363_52446450_52446705_52459298
transcript_61273.known	chrX	-	1763	6	FSM	ENSMUSG00000023074.12	ENSMUST00000023836.4	1763	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	37.7804182083788	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAAAAAAAAAAAGCCCCCT	NA	False	NA	NA	False	AATAAA	-7	NA	52459379	52433897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_52434867_52436580_52436743_52444529_52444751_52446286_52446363_52446450_52446705_52459298
transcript_61275.known	chrX	-	1195	1	FSM	ENSMUSG00000067925.5	ENSMUST00000088779.5	1195	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	12	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGTCTTACTTAGTATAG	NA	False	NA	NA	False	AATAAA	-25	NA	52645649	52644454	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_52644500_52645600
transcript_61276.known	chrX	-	1232	1	FSM	ENSMUSG00000067924.5	ENSMUST00000088778.5	1232	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTAAAAGGAAATGGAGTCT	NA	False	NA	NA	False	AATAAA	-13	NA	52672375	52671143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_52671100_52672400
transcript_61277.known	chrX	+	1427	5	FSM	ENSMUSG00000055555.2	ENSMUST00000069209.2	1427	5	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_4	18.2397231338636	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATACTGTTTACCTGTAGTT	NA	False	NA	NA	False	AATAAA	-18	NA	52726792	52740408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_52727016_52729333_52729516_52735693_52735827_52738241_52738355_52739632
transcript_61282.nic	chrX	+	1455	3	ISM	ENSMUSG00000055555.2	ENSMUST00000069209.2	1427	5	-25	3690	-25	-3690	5prime_fragment	FALSE	canonical	3	164	junction_2	2.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGTAAATCTCATAAACTATA	NA	False	NA	NA	False	AATAAA	-20	NA	52726767	52736718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_52727016_52729333_52729516_52735693
transcript_61290.known	chrX	-	1224	9	FSM	ENSMUSG00000054727.3	ENSMUST00000067940.3	1224	9	0	0	0	0	multi-exon	FALSE	canonical	3	1101	junction_5	153.190241203544	1931	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATTGACTTTAGTATATTT	NA	False	NA	-11	True	AGTAAA	-17	NA	52759798	52744867	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_52745154_52745318_52745424_52747619_52747719_52748908_52749009_52749789_52749908_52751980_52752016_52752989_52753054_52753476_52753824_52759728
transcript_61295.known	chrX	-	984	8	FSM	ENSMUSG00000054626.12	ENSMUST00000114810.2	984	8	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_7	54.1238187409392	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGTGGCAAATAGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	52799663	52785714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798188_52799598
transcript_61297.nnic	chrX	-	1070	8	NNC	ENSMUSG00000054626.12	novel	1032	8	NA	NA	-46	0	at_least_one_novel_splicesite	TRUE	canonical	3	47	junction_7	85.2532840949813	44	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGTGGCAAATAGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	52799719	52785714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798218_52799598
transcript_61298.known	chrX	-	1032	8	FSM	ENSMUSG00000054626.12	ENSMUST00000067763.10	1032	8	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_7	69.0238054173031	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTGAGTGGCAAATAGTCC	NA	False	NA	NA	False	AATAAA	-13	NA	52799663	52785714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_52786140_52786458_52786558_52789056_52789157_52789849_52789968_52797434_52797470_52797739_52797804_52798109_52798236_52799598
transcript_6130.nic	chr10	-	1440	11	ISM	ENSMUSG00000025364.14	ENSMUST00000131728.4	2483	12	-174	1307	-174	-1307	5prime_fragment	FALSE	canonical	3	1853	junction_10	120.601658363391	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAGAAAAAGAAGGTGTGTG	8518	False	NA	NA	False	NA	NA	NA	128402030	128394943	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_128394985_128395098_128395227_128395306_128395402_128395950_128396164_128396527_128396607_128396787_128396852_128398695_128398789_128398934_128399005_128399092_128399199_128399445_128399575_128401608
transcript_61311.known	chrX	+	1022	8	FSM	ENSMUSG00000031125.3	ENSMUST00000033458.3	1022	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	16.2819544532076	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTGGCAAATAGTCCTT	NA	False	NA	NA	False	AATAAA	-15	NA	55181931	55198858	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_55181986_55183330_55183457_55183770_55183835_55184104_55184140_55192435_55192554_55193247_55193348_55198014_55198114_55198432
transcript_61314.nnic	chrX	+	921	7	NIC	ENSMUSG00000031125.3	novel	1022	8	NA	NA	-25	0	combination_of_known_splicesites	FALSE	canonical	2	6	junction_1	19.6864307469779	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGAGTGGCAAATAGTCCTT	NA	False	NA	NA	False	AATAAA	-15	NA	55181906	55198858	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_55181986_55183770_55183835_55184104_55184140_55192435_55192554_55193247_55193348_55198014_55198114_55198432
transcript_61315.known	chrX	-	951	8	FSM	ENSMUSG00000073177.9	ENSMUST00000101561.8	951	8	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	4.42165358301205	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGATTTTTTGCAATGTTA	NA	False	NA	NA	False	AATAAA	-19	NA	55258241	55235186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_55235530_55239012_55239112_55241930_55242031_55242833_55242952_55246943_55246979_55247366_55247437_55248032_55248151_55258173
transcript_61317.nic	chrX	-	919	7	NIC	ENSMUSG00000073177.9	novel	951	8	NA	NA	-3	0	combination_of_known_junctions	FALSE	canonical	2	2	junction_4	8.67307455417179	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTGATTTTTTGCAATGTTA	NA	False	NA	NA	False	AATAAA	-19	NA	55258244	55235186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_55235530_55239012_55239112_55241930_55242031_55242833_55242952_55247366_55247437_55248032_55248151_55258173
transcript_61318.known	chrX	+	547	3	FSM	ENSMUSG00000085114.2	ENSMUST00000151426.2	547	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACAAGCTGTATTTTCATTTC	NA	False	NA	NA	False	AATAAA	-27	NA	55362967	55366024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_55363107_55364299_55364361_55365677
transcript_61319.known	chrX	+	3738	5	FSM	ENSMUSG00000073176.5	ENSMUST00000101560.4	3738	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	8.6421930087218	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTTTCTGATTCTTTTA	NA	False	NA	6	True	AATAAA	-16	NA	55391759	55411034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_55391800_55393642_55394089_55398822_55399028_55407826_55407941_55408101
transcript_61320.known	chrX	+	2393	2	FSM	ENSMUSG00000054850.5	ENSMUST00000068106.5	2393	2	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATCCTGGCTGCCTCCTG	NA	False	NA	14	True	AAGAAA	-15	NA	55419945	55423159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_55420569_55421389
transcript_61322.known	chrX	+	3766	17	FSM	ENSMUSG00000035967.16	ENSMUST00000039374.9	3766	17	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_10	18.8414436814168	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTTCTAGGTGTATGTC	NA	False	NA	15	True	AATAAA	-26	NA	55500236	55553199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_55500677_55500808_55500887_55524989_55525140_55525930_55526021_55526249_55526434_55526685_55526815_55529138_55529303_55530598_55530752_55534365_55534499_55538398_55538494_55541875_55542095_55543220_55543345_55544927_55545071_55547020_55547256_55550084_55550460_55551732_55551827_55552239
transcript_61327.nic	chrX	+	2366	17	NIC	ENSMUSG00000060681.16	novel	4976	16	NA	NA	-5	376	combination_of_known_junctions	TRUE	canonical	0	0	junction_8	37.5097903886439	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTATCTGAGTACCGAGT	NA	False	NA	23	True	CATAAA	-25	NA	55655129	55707117	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_55655181_55655322_55655548_55665685_55665886_55667970_55668049_55668347_55668425_55668719_55668833_55673753_55673860_55678809_55678952_55680145_55680252_55680537_55680627_55683634_55683749_55688727_55688840_55691159_55691314_55696987_55697019_55700333_55700414_55703618_55703725_55706535
transcript_61328.nic	chrX	+	4438	17	NIC	ENSMUSG00000060681.16	novel	4976	16	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_8	37.5097903886439	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATAACCATTCACTGTTAT	NA	False	NA	13	True	ATTAAA	-17	NA	55655129	55709189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_55655181_55655322_55655548_55665685_55665886_55667970_55668049_55668347_55668425_55668719_55668833_55673753_55673860_55678809_55678952_55680145_55680252_55680537_55680627_55683634_55683749_55688727_55688840_55691159_55691314_55696987_55697019_55700333_55700414_55703618_55703725_55706535
transcript_61329.nic	chrX	+	2547	8	NIC	ENSMUSG00000023092.17	novel	2770	8	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_6	57.513796037941	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGAGCACGCCTCCTGTCT	NA	False	NA	4	True	AATAAA	-10	NA	55777147	55838698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55834679_55835236_55835407_55835823_55836011_55836598_55836799_55837203
transcript_61331.known	chrX	+	2356	7	FSM	ENSMUSG00000023092.17	ENSMUST00000023854.10	2356	7	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_5	4.78423336480244	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGCCTCCTGTCTTTTTATTC	NA	False	NA	12	True	AATAAA	-18	NA	55777146	55838706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_55777229_55799694_55799752_55833348_55833531_55834503_55834679_55835236_55835407_55835823_55836011_55837203
transcript_61332.known	chrX	-	2891	16	FSM	ENSMUSG00000067878.14	ENSMUST00000114766.8	2891	16	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_7	2.18682926224756	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCTCTGTTGTCTCTTTTT	NA	False	NA	NA	False	AGTAAA	-27	NA	55867686	55843217	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_55843463_55844649_55845030_55846362_55846553_55847120_55847203_55849725_55849831_55850759_55850905_55853203_55853331_55854977_55855151_55855397_55855526_55856222_55856912_55858674_55858768_55860884_55860994_55862635_55862800_55864035_55864114_55864203_55864297_55867596
transcript_61334.nic	chrX	+	2779	9	ISM	ENSMUSG00000067873.12	ENSMUST00000088652.6	2810	10	219	0	-64	0	3prime_fragment	FALSE	canonical	3	455	junction_5	31.3996417177012	90	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGGACTTGAGTTAACTTG	NA	False	NA	16	True	AATAAA	-31	NA	56099193	56112543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56104245_56104410_56105213_56105314_56109476_56109567_56110365_56110504_56111005
transcript_61335.nic	chrX	+	1065	5	ISM	ENSMUSG00000067873.12	ENSMUST00000114751.9	1128	6	251	0	-64	0	3prime_fragment	FALSE	canonical	3	35	junction_4	215.852380111964	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCCCACTGGCTCACTTAT	NA	False	NA	25	True	NA	NA	NA	56099193	56102566	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_56099559_56100857_56101039_56101404_56101453_56101859_56102015_56102250
transcript_61336.known	chrX	-	2139	10	FSM	ENSMUSG00000031134.17	ENSMUST00000140384.8	2139	10	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_8	6.66296193358442	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AGAAAAAAAAAATTAGCCTT	NA	False	NA	NA	False	AATATA	-28	NA	56438341	56428889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_56429922_56430492_56430582_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437059_56438211
transcript_61337.known	chrX	-	2108	9	FSM	ENSMUSG00000031134.17	ENSMUST00000114726.8	2108	9	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_8	24.9871842151132	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAACCCTGAAGCTGCAAAC	NA	False	NA	-16	True	AATAAA	-15	NA	56438396	56431721	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_56432754_56433420_56433504_56433881_56434008_56434104_56434220_56434778_56434932_56435423_56435596_56436631_56436739_56436926_56437062_56438211
transcript_61340.known	chrX	+	2156	17	FSM	ENSMUSG00000079584.3	ENSMUST00000114725.3	2156	17	0	0	0	0	multi-exon	FALSE	canonical	1	199	junction_7	106.775300719548	516	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAAAACCTCCCTGTCTGGC	NA	False	NA	9	True	TATAAA	-2	NA	56454513	56534127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_56454734_56459619_56459688_56461126_56461221_56463018_56463147_56463508_56463639_56467202_56467331_56468624_56468737_56478568_56478649_56481769_56481879_56482743_56482877_56484923_56485044_56485247_56485306_56508440_56508601_56509625_56509775_56513777_56513890_56517713_56517886_56533944
transcript_61345.known	chrX	+	3949	3	FSM	ENSMUSG00000067860.12	ENSMUST00000088627.11	3949	3	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_2	9.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTTATAACTTTTTTTG	9500	False	NA	12	True	AATAAA	-18	NA	57076002	57081919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_57077598_57078721_57078886_57079729
transcript_61350.known	chrX	+	1951	3	FSM	ENSMUSG00000067860.12	ENSMUST00000088629.4	1951	3	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_2	99.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGATTATTGTTTTAT	9867	False	NA	NA	False	NA	NA	NA	57076369	57087096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_57077598_57078721_57078886_57086537
transcript_61352.known	chrX	+	1572	2	FSM	ENSMUSG00000046180.12	ENSMUST00000062542.5	1572	2	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_1	0	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCAGCAGTGTTTGTTC	NA	False	NA	13	True	AATAAA	-18	NA	57956820	57965664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_57956922_57964193
transcript_61353.known	chrX	-	2499	5	FSM	ENSMUSG00000031137.18	ENSMUST00000033473.12	2499	5	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	5.62916512459885	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAACTTCAATGTGTGTT	NA	False	NA	NA	False	AATAAA	-25	NA	58179796	58107504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_58109030_58112760_58112960_58171253_58171358_58177199_58177311_58179236
transcript_61358.nnic	chrX	-	4101	28	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	539	0	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_27	79.0220750182634	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	59223910	59101315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
transcript_61359.known	chrX	-	4227	28	FSM	ENSMUSG00000031139.17	ENSMUST00000063507.11	4227	28	0	0	0	0	multi-exon	FALSE	canonical	3	390	junction_27	54.2283947104	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTGGTGTTCGTGTATT	NA	False	NA	-2	True	AATAAA	-29	NA	59224449	59101315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_59102051_59105206_59105314_59107439_59107583_59108453_59108518_59109956_59110036_59112514_59112608_59122540_59122763_59128218_59128345_59129760_59129854_59152815_59152909_59154776_59154847_59155115_59155232_59155927_59155995_59158738_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
transcript_61365.nnic	chrX	-	2767	15	NNC	ENSMUSG00000031139.17	novel	4227	28	NA	NA	799	-56486	at_least_one_novel_splicesite	FALSE	canonical	3	198	junction_14	93.2665972536004	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCTGTTCTACTTTGTTT	NA	False	NA	-1	True	NA	NA	NA	59223650	59157804	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223528
transcript_61366.nic	chrX	-	3272	15	ISM	ENSMUSG00000031139.17	ENSMUST00000063507.11	4227	28	-119	56489	-119	-56486	5prime_fragment	FALSE	canonical	3	390	junction_14	50.407775963149	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCATCTGTTCTACTTTGTTT	NA	False	NA	-1	True	NA	NA	NA	59224568	59157804	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_59158819_59160462_59160507_59166299_59166472_59168475_59168668_59170068_59170261_59172375_59172496_59174656_59174772_59175403_59175538_59178967_59179118_59180738_59180856_59181613_59181734_59198259_59198351_59200962_59201078_59205586_59205656_59223941
transcript_61379.known	chrX	+	1459	1	FSM	ENSMUSG00000057615.6	ENSMUST00000075983.6	1459	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	27	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTTGTCTTTTCATGG	NA	False	NA	13	True	AATAAA	-26	NA	60753102	60754561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_60753100_60754600
transcript_61382.known	chrX	+	1970	4	FSM	ENSMUSG00000045330.9	ENSMUST00000051414.2	1970	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	2.62466929133727	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCAAATCTTTTCTGTTTGG	NA	False	NA	NA	False	AATAAA	-21	NA	61330747	61335684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_61330842_61332956_61333046_61333767_61333841_61333970
transcript_61383.nnic	chrX	-	702	4	NNC	ENSMUSG00000085757.8	novel	594	3	NA	NA	5326	0	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_3	20.4993224820291	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61565291	61554144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_61554605_61558040_61558144_61564384_61564454_61565221
transcript_6139.known	chr10	-	681	4	FSM	ENSMUSG00000025362.7	ENSMUST00000026420.7	681	4	0	0	0	0	multi-exon	FALSE	canonical	3	11844	junction_3	3964.03030036631	4454	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACATGGCATCGGAGTGTGTT	NA	False	NA	-12	True	NA	NA	NA	128462616	128460405	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128460506_128461075_128461207_128461931_128462110_128462344
transcript_61390.nnic	chrX	-	633	3	NNC	ENSMUSG00000085757.8	novel	594	3	NA	NA	-26402	0	at_least_one_novel_splicesite	FALSE	canonical	2	12	junction_2	22.5	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61597019	61554144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_61554605_61558040_61558144_61596949
transcript_61391.nnic	chrX	-	629	3	NNC	ENSMUSG00000085757.8	novel	594	3	NA	NA	-27892	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_2	26.5	9	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACAAATATGAGTTGATTT	NA	False	NA	NA	False	AATAAA	-25	NA	61598509	61554144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_61554605_61558040_61558144_61598443
transcript_61392.known	chrX	+	1649	4	FSM	ENSMUSG00000031179.15	ENSMUST00000033522.15	1649	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	1.69967317119759	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTATGTTTAGTCTCCCGTT	NA	False	NA	NA	False	AATAAA	-20	NA	63217153	63222384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_63217298_63219533_63219620_63220397_63220469_63221036
transcript_61393.known	chrX	+	854	3	FSM	ENSMUSG00000031181.3	ENSMUST00000033524.3	854	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATTGAGTTACTGTTTTTA	NA	False	NA	NA	False	AAAACA	-1	NA	64091249	64092620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_64091683_64092028_64092158_64092328
transcript_61395.nnic	chrX	-	1676	9	NNC	ENSMUSG00000079578.2	novel	782	8	NA	NA	-920	679	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_8	9.82264602843857	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGAAATATGTCAATTAAA	NA	False	NA	NA	False	AATAAA	-23	NA	66738088	66725826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_66726652_66726758_66726864_66732572_66732672_66733445_66733546_66734431_66734550_66736337_66736373_66736521_66736592_66737059_66737213_66737917
transcript_61396.nnic	chrX	+	1674	9	NNC	ENSMUSG00000079577.2	novel	782	8	NA	NA	-916	679	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	9.9365172470036	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTGAAATATGTCAATTAAA	NA	False	NA	NA	False	AATAAA	-23	NA	66738387	66750635	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_66738557_66739259_66739413_66739880_66739951_66740099_66740135_66741912_66742031_66742916_66743017_66743790_66743890_66749598_66749704_66749810
transcript_61397.known	chrX	+	4409	17	FSM	ENSMUSG00000000838.18	ENSMUST00000088546.12	4409	17	0	0	0	0	multi-exon	FALSE	canonical	3	466	junction_14	131.607237049298	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	20	True	ATTAAA	-26	NA	67722146	67761569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67749466_67749530_67751647_67751735_67754189_67754386_67755836_67756020_67756846_67756930_67759170
transcript_6140.known	chr10	-	596	3	FSM	ENSMUSG00000025362.7	ENSMUST00000219591.2	596	3	0	0	0	0	multi-exon	FALSE	canonical	3	15147	junction_1	3128	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGCATCGGAGTGTGTTTAT	NA	False	NA	-9	True	NA	NA	NA	128462293	128460402	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128460506_128461075_128461207_128461931
transcript_61400.known	chrX	+	4076	16	FSM	ENSMUSG00000000838.18	ENSMUST00000114657.9	4076	16	0	0	0	0	multi-exon	FALSE	canonical	3	289	junction_11	161.476190195335	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTAGTCTGACAGATGTTT	NA	False	NA	20	True	ATTAAA	-26	NA	67722416	67761569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_67722474_67731887_67731941_67735106_67735201_67738619_67738692_67739094_67739244_67741273_67741368_67741453_67741571_67743665_67743837_67743947_67744027_67747268_67747379_67748854_67748987_67751647_67751735_67754189_67754386_67755836_67756020_67756846_67756930_67759170
transcript_61404.known	chrX	+	842	6	FSM	ENSMUSG00000062170.13	ENSMUST00000071848.7	842	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	319.056484027515	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805539	67848173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_67805838_67807537_67807616_67812561_67812700_67815650_67815748_67847210_67847300_67848031
transcript_61407.known	chrX	+	799	5	FSM	ENSMUSG00000062170.13	ENSMUST00000069731.12	799	5	0	0	0	0	multi-exon	FALSE	canonical	3	455	junction_2	146.787899705664	958	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805444	67848173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_67805838_67807537_67807616_67815650_67815748_67847210_67847300_67848031
transcript_6141.known	chr10	-	2497	4	FSM	ENSMUSG00000049858.9	ENSMUST00000054764.9	2497	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	1.88561808316413	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACTGGAATCTCTTGGGCC	8592	False	NA	-7	True	AATAAA	-18	NA	128509942	128505762	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128507796_128507972_128508151_128508407_128508472_128509720
transcript_61412.known	chrX	+	679	4	FSM	ENSMUSG00000062170.13	ENSMUST00000114647.8	679	4	0	0	0	0	multi-exon	FALSE	canonical	3	331	junction_1	201.191451110627	642	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGGATTCTTTTTGTTAAA	NA	False	NA	27	True	ATTAAA	-27	NA	67805486	67848173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_67805838_67815650_67815748_67847210_67847300_67848031
transcript_61415.known	chrX	-	750	1	FSM	ENSMUSG00000082926.4	ENSMUST00000120762.2	750	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	8478	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTCTTTAAGAGCAACAAATA	NA	False	NA	NA	False	NA	NA	NA	68649851	68649101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_68649100_68649900
transcript_61416.known	chrX	+	525	2	FSM	ENSMUSG00000059690.2	ENSMUST00000075654.2	525	2	0	0	0	0	multi-exon	FALSE	canonical	3	3	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATGCCTGTCTCTGTGTTCT	NA	False	NA	NA	False	AATAAA	-19	NA	68988905	68989584	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_68989057_68989210
transcript_61419.known	chrX	+	1094	3	FSM	ENSMUSG00000045237.6	ENSMUST00000053981.6	1094	3	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_1	1.5	225	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGAAGTGTCTAGCTCCCT	NA	False	NA	14	True	AATAAA	-21	NA	69429482	69433023	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_69429758_69431499_69431773_69432477
transcript_6142.known	chr10	-	3180	6	FSM	ENSMUSG00000000711.4	ENSMUST00000000727.4	3180	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_5	17.0528589978338	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCACTGGACTGTTGTTTT	NA	False	NA	NA	False	AGTAAA	-16	NA	128532133	128513043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128515515_128517254_128517349_128518692_128518816_128519063_128519216_128522616_128522878_128532054
transcript_61421.nic	chrX	-	2364	7	NIC	ENSMUSG00000073139.10	novel	1307	7	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_5	74.9288551449529	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520795	69503358	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510810_69513723_69513901_69520583
transcript_61422.known	chrX	-	1307	7	FSM	ENSMUSG00000073139.10	ENSMUST00000114630.3	1307	7	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_5	21.8587638158144	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACCATCTGAAGCCTCGTTT	NA	False	NA	NA	False	NA	NA	NA	69520786	69504564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69508608_69508693_69510759_69510968_69513723_69513901_69520583
transcript_61425.nic	chrX	-	2280	6	NIC	ENSMUSG00000073139.10	novel	2429	6	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_3	103.207364078345	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520795	69503358	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_69504899_69505796_69505921_69506450_69506628_69510759_69510810_69513723_69513901_69520583
transcript_61426.known	chrX	-	2429	6	FSM	ENSMUSG00000073139.10	ENSMUST00000101506.10	2429	6	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_3	81.8300678235085	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGTGTATTTTATTCT	NA	False	NA	-1	True	AATAAA	-20	NA	69520786	69503358	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_69504899_69505796_69505921_69506450_69506628_69510759_69510968_69513723_69513901_69520583
transcript_6143.known	chr10	-	1629	4	FSM	ENSMUSG00000000711.4	ENSMUST00000220593.2	1629	4	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_3	13.5728487143349	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	GAAAAGAAAAAAAAAAGAAA	NA	False	NA	NA	False	AATAAA	-3	NA	128532126	128517671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128518816_128519063_128519216_128522616_128522878_128532054
transcript_61430.known	chrX	+	3379	15	FSM	ENSMUSG00000031337.17	ENSMUST00000061970.12	3379	15	0	0	0	0	multi-exon	FALSE	canonical	3	290	junction_14	28.3207755284104	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCAGGGCTATGACTGT	NA	False	NA	16	True	AATAAA	-24	NA	70258611	70358901	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
transcript_61431.nic	chrX	+	3361	15	NIC	ENSMUSG00000031337.17	novel	3338	15	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_1	80.3753947525774	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAACAGTATTTCCAGGGCTA	NA	False	NA	9	True	AATAAA	-41	NA	70258687	70358894	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_70258754_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
transcript_61434.nnic	chrX	+	2132	14	NNC	ENSMUSG00000031337.17	novel	3379	15	NA	NA	-15	4506	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_13	93.3887339099411	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATGGAGTATGGTCACACTC	NA	False	NA	NA	False	ACTAAA	-3	NA	70258596	70346973	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70346408
transcript_61435.nic	chrX	+	2672	14	ISM	ENSMUSG00000031337.17	ENSMUST00000061970.12	3379	15	-15	6491	-15	-1507	5prime_fragment	FALSE	canonical	3	300	junction_1	26.1022114731105	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTGGAACCTTGTTGAT	NA	False	NA	NA	False	ATTAAA	-24	NA	70258596	70352410	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70351305
transcript_61436.nnic	chrX	+	3213	14	NIC	ENSMUSG00000031337.17	novel	3379	15	NA	NA	-15	3	combination_of_known_splicesites	FALSE	canonical	3	5	junction_13	93.3887339099411	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTATTTCCAGGGCTATGA	NA	False	NA	12	True	AATAAA	-44	NA	70258596	70358897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106_70346221_70357251
transcript_61439.nic	chrX	+	1706	13	ISM	ENSMUSG00000031337.17	ENSMUST00000061970.12	3379	15	-15	12542	-15	3892	5prime_fragment	FALSE	canonical	3	300	junction_1	25.7793791408732	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTGAGAATTATATAGAGTAT	NA	False	NA	NA	False	AGTAAA	-18	NA	70258596	70346359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_70258689_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339956_70343173_70343381_70345339_70345433_70346106
transcript_61443.known	chrX	+	3338	15	FSM	ENSMUSG00000031337.17	ENSMUST00000114617.2	3338	15	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_10	112.146496756225	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAATAAATATATTAACTAAA	NA	False	NA	-14	True	AATAAA	-18	NA	70258687	70358871	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_70258754_70274996_70275068_70276677_70276751_70278457_70278553_70297856_70297968_70303330_70303433_70328206_70328291_70330757_70330908_70335354_70335544_70339769_70339954_70343171_70343381_70345339_70345433_70346106_70346221_70351305_70351483_70357251
transcript_61444.known	chrX	-	3600	10	FSM	ENSMUSG00000035776.15	ENSMUST00000037391.12	3600	10	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_4	6.51683479938452	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGATGTGATCTGTCT	NA	False	NA	1	True	NA	NA	NA	70536455	70463665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_70466356_70467629_70467696_70472652_70472773_70473916_70473956_70481739_70481806_70484130_70484218_70484679_70484752_70493544_70493614_70494216_70494280_70536127
transcript_61445.known	chrX	-	3327	9	FSM	ENSMUSG00000035776.15	ENSMUST00000080035.11	3327	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_7	17.0399347123162	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGATGTGATCTGTCT	NA	False	NA	1	True	NA	NA	NA	70536251	70463665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_70466356_70467629_70467696_70472652_70472773_70473916_70473956_70481739_70481806_70484130_70484218_70484679_70484752_70494216_70494280_70536127
transcript_6145.known	chr10	-	2834	24	FSM	ENSMUSG00000025357.9	ENSMUST00000026414.9	2834	24	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_14	14.5196561901106	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTCCCGCAAGGTTCTGA	9991	False	NA	-10	True	AATAAA	-16	NA	128579944	128556002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128556376_128556585_128556647_128556820_128556942_128557046_128557246_128558322_128558414_128559053_128559119_128559387_128559549_128563936_128564027_128564124_128564211_128565467_128565540_128565743_128565818_128566059_128566129_128566473_128566573_128566936_128567057_128567192_128567282_128568851_128568967_128569133_128569254_128569433_128569509_128569956_128570007_128571699_128571778_128572009_128572146_128572513_128572588_128572877_128573014_128579664
transcript_61450.known	chrX	+	1544	5	FSM	ENSMUSG00000015217.12	ENSMUST00000015361.11	1544	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	352.483687565822	695	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599546	70604282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_70599615_70601662_70601814_70602038_70602179_70602703_70602879_70603272
transcript_61452.known	chrX	+	1743	5	FSM	ENSMUSG00000015217.12	ENSMUST00000114582.9	1743	5	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_1	303.596360320739	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599533	70604282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_70599797_70601658_70601814_70602038_70602179_70602703_70602879_70603272
transcript_61453.known	chrX	+	1728	5	FSM	ENSMUSG00000015217.12	ENSMUST00000088874.10	1728	5	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_1	352.060630431748	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTGACTCACCAGTCTTT	NA	False	NA	NA	False	AATAAA	-45	NA	70599595	70604282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_70599844_70601658_70601814_70602038_70602179_70602703_70602879_70603272
transcript_61454.known	chrX	+	3069	2	FSM	ENSMUSG00000056380.14	ENSMUST00000070449.6	3069	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTCTGTGACTCTTTATTCC	NA	False	NA	NA	False	AATAAA	-19	NA	70707272	70712863	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_70707609_70710130
transcript_61455.nnic	chrX	+	788	4	NNC	ENSMUSG00000073131.13	novel	4652	4	NA	NA	-3170	74	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_2	181.726901329073	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAGTCTTAAAGAGTCAGTC	NA	False	NA	27	True	AATAAA	-39	NA	70856359	70864664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_70856555_70860076_70860306_70863673_70863784_70864410
transcript_61456.known	chrX	+	483	4	FSM	ENSMUSG00000073131.13	ENSMUST00000138979.2	483	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_2	185.749532674752	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATATGTTACATAATTCCG	NA	False	NA	-47	True	ATTAAA	-37	NA	70860418	70864590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_70860547_70861248_70861314_70863673_70863784_70864410
transcript_61457.known	chrX	+	4195	3	FSM	ENSMUSG00000073131.13	ENSMUST00000114576.9	4195	3	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_1	56.5	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGCTGTGTCCTCATTCG	NA	False	NA	16	True	ATTAAA	-20	NA	70860363	70868312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_70860547_70863673_70863784_70864410
transcript_61460.nnic	chrX	+	2295	7	Genic_Genomic	ENSMUSG00000033343.2	novel	948	1	NA	NA	-4091	463	multi-exon	FALSE	canonical	2	4	junction_1	3.07769755210323	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTTCGCCGGGCATCTGTT	NA	False	NA	NA	False	NA	NA	NA	71261531	71267033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chrX_+_71261614_71262220_71262501_71263739_71263837_71264233_71264433_71264562_71264653_71264786_71264860_71265559
transcript_61461.known	chrX	-	1821	4	FSM	ENSMUSG00000043453.6	ENSMUST00000088481.5	1821	4	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	0.471404520791032	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCACATGCTCCAAATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	71430464	71425475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_71427050_71427946_71428036_71428780_71428874_71430399
transcript_61462.known	chrX	-	1286	5	FSM	ENSMUSG00000031347.13	ENSMUST00000114551.10	1286	5	0	0	0	0	multi-exon	TRUE	canonical	3	590	junction_4	36.4862987983161	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACTTGTGGATTTTTACA	NA	False	NA	-2	True	CATAAA	-17	NA	71962017	71957137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_71957900_71958445_71958584_71959870_71960000_71960293_71960453_71961919
transcript_61469.known	chrX	+	2168	8	FSM	ENSMUSG00000031349.5	ENSMUST00000033715.5	2168	8	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_6	28.7537042866494	349	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACAGTTTGTGTTGCTGGCT	NA	False	NA	NA	False	AATAAA	-6	NA	71962162	72002120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_71962300_71969899_71970017_71973229_71973389_71992770_71992918_71996448_71996578_71998677_71998821_71999942_72000046_72000887
transcript_6147.nic	chr10	+	2195	12	NIC	ENSMUSG00000025359.11	novel	2130	11	NA	NA	-52	-114	combination_of_known_junctions	FALSE	canonical	3	18	junction_1	18.002295537739	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGAGGGCTTTTGTTGCTG	NA	False	NA	4	True	AATAAA	-15	NA	128540996	128555993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr10_+_128541154_128542104_128542228_128549913_128550025_128550150_128550298_128551089_128551225_128551395_128551558_128551795_128552420_128553619_128553737_128553926_128554012_128554466_128554673_128554768_128554857_128555753
transcript_6148.known	chr10	-	2406	8	FSM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	0	0	0	0	multi-exon	FALSE	canonical	3	682	junction_2	218.467295455575	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGTAGAGTGAATCTCTTT	8248	False	NA	-21	True	ATTAAA	-15	NA	128540899	128533812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128535080_128535340_128535545_128535844_128535989_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
transcript_61481.known	chrX	+	3533	19	FSM	ENSMUSG00000031351.16	ENSMUST00000114546.9	3533	19	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_9	16.5279411756629	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCGTGTGTATGTGTGCAC	NA	False	NA	45	True	AATAAA	-45	NA	72030965	72075149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_72031126_72040640_72040719_72040887_72041012_72041343_72041410_72042141_72042181_72042274_72042353_72042856_72042944_72043622_72043707_72044593_72044678_72045013_72045053_72046180_72046265_72046978_72047066_72056045_72056235_72059344_72059456_72060300_72060382_72061979_72062049_72064473_72064577_72072450_72072550_72073278
transcript_61485.nnic	chrX	-	2625	5	NNC	ENSMUSG00000050424.10	novel	1280	2	NA	NA	-2618	0	at_least_one_novel_splicesite	FALSE	canonical	1	35	junction_1	20.9568008054665	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGGCTATGTTCTTTCTGGC	NA	False	NA	-7	True	AATAAA	-14	NA	72083327	72077593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_72077934_72078769_72080775_72080892_72080952_72081548_72081672_72083229
transcript_61487.nnic	chrX	-	1223	9	NNC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_7	103.438085345776	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126134	72117950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125195_72125590_72125674_72125964
transcript_61488.nic	chrX	-	1190	9	NIC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_7	106.028003376467	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126125	72117950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125195_72125590_72125674_72125988
transcript_6149.known	chr10	-	2240	7	FSM	ENSMUSG00000025358.17	ENSMUST00000026415.9	2240	7	0	0	0	0	multi-exon	FALSE	canonical	3	439	junction_2	273.112309011024	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGTGAATCTCTTTCATAT	8275	False	NA	-16	True	ATTAAA	-20	NA	128540872	128533807	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128535080_128535340_128535545_128537211_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
transcript_61491.nnic	chrX	-	1236	9	NNC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	canonical	3	72	junction_8	86.1506674379253	80	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126134	72117950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125590_72125674_72125964
transcript_61492.known	chrX	-	1162	9	FSM	ENSMUSG00000079845.9	ENSMUST00000078775.13	1162	9	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_8	89.7743699504486	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126084	72117950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125590_72125674_72125988
transcript_61493.nnic	chrX	-	1200	9	NNC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_7	100.580502583751	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126134	72117950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125626_72125674_72125964
transcript_61494.nic	chrX	-	1167	9	NIC	ENSMUSG00000079845.9	novel	1162	9	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_7	103.290548938419	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	72126125	72117950	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_72118324_72118440_72118537_72120338_72120438_72121630_72121731_72122581_72122700_72124325_72124395_72125079_72125208_72125626_72125674_72125988
transcript_6150.nic	chr10	-	1044	5	ISM	ENSMUSG00000025358.17	ENSMUST00000026416.15	2406	8	-45	3191	-44	225	5prime_fragment	FALSE	canonical	3	1015	junction_2	105.157025442906	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCCCTGAGTGAGCTCAATC	8203	False	NA	NA	False	NA	NA	NA	128540944	128537003	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_128537314_128538281_128538453_128539575_128539697_128539794_128539873_128540580
transcript_61507.known	chrX	-	1584	9	FSM	ENSMUSG00000057836.13	ENSMUST00000114524.9	1584	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	496.010190797528	476	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	-5	True	AATAAA	-18	NA	72140623	72129898	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138551_72138689_72140586
transcript_61508.known	chrX	-	1645	9	FSM	ENSMUSG00000057836.13	ENSMUST00000074619.6	1645	9	0	0	0	0	multi-exon	FALSE	canonical	3	586	junction_7	340.598531081683	585	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	-7	True	AATAAA	-16	NA	72140701	72129900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72134565_72135379_72135498_72136875_72136911_72137788_72137859_72138566_72138689_72140586
transcript_61509.known	chrX	-	3783	7	FSM	ENSMUSG00000057836.13	ENSMUST00000172709.8	3783	7	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_5	560.301406982587	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	-5	True	AATAAA	-18	NA	72140629	72129898	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72130791_72130883_72130980_72133005_72133105_72134464_72136911_72137788_72137859_72138551_72138689_72140586
transcript_6151.nic	chr10	-	894	4	ISM	ENSMUSG00000025357.9	ENSMUST00000026414.9	2834	24	22559	0	9531	0	3prime_fragment	FALSE	canonical	3	88	junction_2	12.5521135891752	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTCCCGCAAGGTTCTGA	8848	False	NA	-10	True	AATAAA	-16	NA	128557385	128556002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_-_128556376_128556585_128556647_128556820_128556942_128557046
transcript_61519.known	chrX	-	1650	9	FSM	ENSMUSG00000058328.14	ENSMUST00000078574.12	1650	9	0	0	0	0	multi-exon	TRUE	canonical	3	269	junction_2	77.2438306598009	152	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72161308	72151240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161207
transcript_61520.nnic	chrX	-	1179	9	NNC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	-23	303	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_8	132.269551957357	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161331	72151711	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161230
transcript_61521.nic	chrX	-	1137	9	NIC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	-35	303	combination_of_known_junctions	FALSE	canonical	3	112	junction_8	115.823141038395	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161343	72151711	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_72152123_72152218_72152324_72153534_72153634_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161284
transcript_61530.nic	chrX	-	1098	8	NIC	ENSMUSG00000058328.14	novel	1650	9	NA	NA	-18	303	combination_of_known_junctions	FALSE	canonical	3	293	junction_4	76.0110088696878	154	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161326	72151711	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161207
transcript_61531.nnic	chrX	-	1080	8	NNC	ENSMUSG00000058328.14	novel	1474	8	NA	NA	-23	303	at_least_one_novel_splicesite	FALSE	canonical	3	49	junction_7	139.651022779159	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72161331	72151711	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161230
transcript_61532.known	chrX	-	1474	8	FSM	ENSMUSG00000058328.14	ENSMUST00000114521.8	1474	8	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_7	121.461844180947	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72161308	72151240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72152123_72152218_72152324_72155020_72155121_72155796_72155918_72156950_72156986_72158152_72158223_72158740_72158878_72161284
transcript_61538.nnic	chrX	+	1130	9	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	-28	306	at_least_one_novel_splicesite	TRUE	canonical	3	104	junction_1	165.884749148317	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192373	72202005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_72192426_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72200175_72201393_72201499_72201594
transcript_61539.nnic	chrX	+	1603	9	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	-28	0	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_1	165.884749148317	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72192373	72202478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_72192426_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72200175_72201393_72201499_72201594
transcript_6154.known	chr10	+	1143	4	FSM	ENSMUSG00000064030.16	ENSMUST00000218218.2	1143	4	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	140.632697320202	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTCAGGCTTTGGCTCT	NA	False	NA	NA	False	AATAAA	-16	NA	128584396	128602433	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128584436_128586151_128586207_128601015_128601110_128601478
transcript_61540.known	chrX	+	1652	9	FSM	ENSMUSG00000072479.11	ENSMUST00000114518.9	1652	9	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_8	146.338167868127	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72192401	72202478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_72192503_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72200175_72201393_72201499_72201594
transcript_61542.nnic	chrX	+	1162	9	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	-6	306	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	176.825434751339	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192395	72202005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_72192480_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72200075_72200175_72201393_72201499_72201594
transcript_61544.nnic	chrX	+	1031	8	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	-28	306	at_least_one_novel_splicesite	FALSE	canonical	3	104	junction_1	175.455093388361	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192373	72202005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_72192426_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72201393_72201499_72201594
transcript_61545.nnic	chrX	+	1103	8	NIC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	-23	306	combination_of_known_splicesites	FALSE	canonical	3	121	junction_7	152.49623615295	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192378	72202005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_72192503_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72201393_72201499_72201594
transcript_61547.nnic	chrX	+	1063	8	NNC	ENSMUSG00000072479.11	novel	1652	9	NA	NA	-6	306	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_1	187.636209029002	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72192395	72202005	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_72192480_72194831_72194969_72195486_72195557_72196723_72196759_72197791_72197913_72198588_72198689_72201393_72201499_72201594
transcript_61549.known	chrX	-	2862	5	FSM	ENSMUSG00000071745.2	ENSMUST00000080324.4	2862	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	17.5499287747842	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGACAGTGTAGATGTCTAA	NA	False	NA	NA	False	AATAAA	-16	NA	72193056	72180837	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72183280_72185114_72185281_72186572_72186670_72186962_72187031_72192967
transcript_6156.known	chr10	+	1158	3	FSM	ENSMUSG00000064030.16	ENSMUST00000163377.10	1158	3	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_1	26	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGGTCAGGCTTTGGCTC	NA	False	NA	NA	False	AATAAA	-15	NA	128583757	128602432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128583868_128601015_128601110_128601478
transcript_61561.known	chrX	+	1564	9	FSM	ENSMUSG00000073125.11	ENSMUST00000101486.5	1564	9	0	0	0	0	multi-exon	FALSE	canonical	3	836	junction_5	296.174779479955	497	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTCAGACTTGTTGGCA	NA	False	NA	NA	False	AATAAA	-8	NA	72235827	72246526	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241077_72241891_72241992_72243351_72243451_72245455_72245552_72245645
transcript_61569.nnic	chrX	+	1556	8	NIC	ENSMUSG00000073125.11	novel	1564	9	NA	NA	-66	0	combination_of_known_splicesites	FALSE	canonical	3	39	junction_6	505.773079713883	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	72235746	72246536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241077_72241891_72241992_72245455_72245552_72245645
transcript_6157.nnic	chr10	+	1341	3	NNC	ENSMUSG00000064030.16	novel	1158	3	NA	NA	-33	-1	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_2	127.5	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCAGGCTTTGGCT	NA	False	NA	NA	False	AATAAA	-14	NA	128583724	128602431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_128583868_128601015_128601261_128601478
transcript_61570.nic	chrX	+	2470	8	NIC	ENSMUSG00000073125.11	novel	1564	9	NA	NA	-66	0	intron_retention	FALSE	canonical	3	856	junction_4	287.08421576042	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	72235746	72246536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72239583_72240958_72241992_72243351_72243451_72245455_72245552_72245645
transcript_61576.known	chrX	+	3780	7	FSM	ENSMUSG00000073125.11	ENSMUST00000137641.8	3780	7	0	0	0	0	multi-exon	FALSE	canonical	3	979	junction_3	266.969203384127	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	NA	False	AATAAA	-18	NA	72235812	72246536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_72235856_72237775_72237913_72238605_72238676_72239547_72241992_72243351_72243451_72245455_72245552_72245645
transcript_61578.known	chrX	+	2384	8	FSM	ENSMUSG00000073125.11	ENSMUST00000138149.2	2384	8	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_2	448.163508791429	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTGTTGGCATGAGTCATT	NA	False	NA	NA	False	AATAAA	-17	NA	72235816	72246535	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_72235856_72237775_72237898_72238605_72238676_72239547_72239583_72240958_72241992_72243351_72243451_72245455_72245552_72245645
transcript_6158.known	chr10	+	1156	3	FSM	ENSMUSG00000064030.16	ENSMUST00000065210.10	1156	3	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	117	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACATGTGGTCAGGCTTTG	NA	False	NA	NA	False	AATAAA	-11	NA	128584323	128602428	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128584436_128601015_128601110_128601478
transcript_61585.nic	chrX	+	1223	9	NIC	ENSMUSG00000067768.13	novel	1200	9	NA	NA	-31	0	combination_of_known_junctions	FALSE	canonical	3	85	junction_1	78.4071903590481	109	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257907	72266059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_72258064_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
transcript_61586.known	chrX	+	1077	9	FSM	ENSMUSG00000067768.13	ENSMUST00000081827.4	1077	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	104.421546507414	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	15	True	AATAAA	-15	NA	72258037	72266056	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_72258064_72258379_72258463_72258846_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
transcript_61591.known	chrX	+	1200	9	FSM	ENSMUSG00000067768.13	ENSMUST00000069077.10	1200	9	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	80.9281123899477	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257954	72266059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_72258088_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
transcript_61593.known	chrX	+	1304	9	FSM	ENSMUSG00000067768.13	ENSMUST00000069103.11	1304	9	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	98.081519028816	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTGGCATGAGTCATTT	NA	False	NA	18	True	AATAAA	-18	NA	72257954	72266059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_72258192_72258379_72258463_72258833_72258962_72259646_72259716_72261328_72261447_72262291_72262392_72263579_72263679_72265472_72265569_72265685
transcript_6160.nic	chr10	+	1559	2	ISM	ENSMUSG00000064030.16	ENSMUST00000163377.10	1158	3	-33	1	-33	-1	intron_retention	FALSE	canonical	3	275	junction_1	0	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGTGGTCAGGCTTTGGCT	NA	False	NA	NA	False	AATAAA	-14	NA	128583724	128602431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr10_+_128583868_128601015
transcript_61603.known	chrX	-	1500	9	FSM	ENSMUSG00000031362.18	ENSMUST00000068551.9	1500	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_7	125.099897581893	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTACCAGCTTTGAATGTCTC	NA	False	NA	NA	False	NA	NA	NA	72286674	72277293	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285789_72286219_72286267_72286581
transcript_61604.nnic	chrX	-	1247	9	NNC	ENSMUSG00000031362.18	novel	1220	9	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	41	junction_8	110.415125775412	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286739	72277684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285802_72286183_72286267_72286557
transcript_61605.known	chrX	-	1220	9	FSM	ENSMUSG00000031362.18	ENSMUST00000114530.8	1220	9	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	102.200477004758	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286736	72277684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285802_72286183_72286267_72286581
transcript_61606.nnic	chrX	-	1211	9	NNC	ENSMUSG00000031362.18	novel	1220	9	NA	NA	-3	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_7	125.741736806042	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286739	72277684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285802_72286219_72286267_72286557
transcript_61607.nic	chrX	-	1184	9	NIC	ENSMUSG00000031362.18	novel	1220	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	32	junction_7	119.637407924946	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286736	72277684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285802_72286219_72286267_72286581
transcript_61612.nic	chrX	-	1602	8	NIC	ENSMUSG00000031362.18	novel	1220	9	NA	NA	0	0	intron_retention	FALSE	canonical	3	63	junction_1	109.115553802529	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286736	72277684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72286267_72286581
transcript_61613.known	chrX	-	1104	9	FSM	ENSMUSG00000031362.18	ENSMUST00000114531.8	1104	9	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_7	121.935433734415	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACTTGTTGGCATGAGTCA	NA	False	NA	-8	True	AATAAA	-15	NA	72286633	72277684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72278057_72278174_72278271_72280979_72281079_72282267_72282368_72283213_72283332_72284921_72284991_72285673_72285789_72286183_72286267_72286581
transcript_61621.known	chrX	-	1584	9	FSM	ENSMUSG00000058147.2	ENSMUST00000080839.2	1584	9	0	0	0	0	multi-exon	FALSE	canonical	3	686	junction_5	383.166718772651	540	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTTGTTGGCATGAGTCAT	NA	False	NA	-8	True	AATAAA	-16	NA	72308996	72298145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72299035_72299128_72299225_72301241_72301341_72302698_72302799_72303613_72303732_72305110_72305146_72306028_72306099_72306921_72307059_72308956
transcript_61631.nic	chrX	-	1240	4	ISM	ENSMUSG00000058147.2	ENSMUST00000080839.2	1584	9	-66	6073	-66	-6073	5prime_fragment	FALSE	canonical	3	1081	junction_3	330.951154502695	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATGATGTCTACCTTAT	NA	False	NA	NA	False	NA	NA	NA	72309062	72304218	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_72305146_72306028_72306099_72306921_72307059_72308956
transcript_61633.known	chrX	-	1656	9	FSM	ENSMUSG00000067764.12	ENSMUST00000114503.9	1656	9	0	0	0	0	multi-exon	TRUE	canonical	3	126	junction_7	127.059963698248	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72336582	72326501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72327390_72327485_72327591_72328811_72328911_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336481
transcript_61638.nnic	chrX	-	1172	9	NNC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	-12	-473	at_least_one_novel_splicesite	FALSE	canonical	3	53	junction_8	157.760696943187	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72336594	72326974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_72327390_72327485_72327591_72328811_72328911_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336504
transcript_61639.nnic	chrX	-	1162	9	NNC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	-56	-473	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_8	149.667913645511	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72336638	72326974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_72327390_72327485_72327591_72328811_72328911_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336558
transcript_61640.nnic	chrX	-	1566	8	NIC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	3	126	junction_6	133.486986295309	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTGTGTTCAGCACATATG	NA	False	NA	NA	False	ATTAAA	-14	NA	72336591	72326501	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_72327390_72327485_72327591_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336481
transcript_61645.nnic	chrX	-	1093	8	NIC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	-9	-473	combination_of_known_splicesites	FALSE	canonical	3	126	junction_6	133.486986295309	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72336591	72326974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_72327390_72327485_72327591_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336481
transcript_61647.nnic	chrX	-	1063	8	NNC	ENSMUSG00000067764.12	novel	1656	9	NA	NA	-56	-473	at_least_one_novel_splicesite	FALSE	canonical	3	96	junction_7	157.992508218147	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTGTGCATGCTTTCATT	NA	False	NA	NA	False	AATAAA	-14	NA	72336638	72326974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_72327390_72327485_72327591_72330297_72330398_72331073_72331195_72332226_72332262_72333427_72333498_72334015_72334153_72336558
transcript_61648.nnic	chrX	-	3747	2	Genic_Genomic	ENSMUSG00000096966.3	novel	2298	1	NA	NA	-3018	1249	multi-exon	FALSE	canonical	3	30	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAACTGTGTCTCACCACTTC	NA	False	NA	-3	True	AATAAA	-15	NA	72445360	72438795	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chrX_-_72442387_72445204
transcript_61652.known	chrX	-	1380	10	FSM	ENSMUSG00000031371.15	ENSMUST00000033737.15	1380	10	0	0	0	0	multi-exon	FALSE	canonical	3	498	junction_3	42.8281089190294	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	False	NA	-12	True	AATAAA	-17	NA	72502650	72480920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72481172_72489415_72489531_72490533_72490744_72491565_72491663_72491797_72491957_72492416_72492509_72496604_72496667_72498472_72498541_72501579_72501696_72502440
transcript_61656.known	chrX	-	1032	7	FSM	ENSMUSG00000031371.15	ENSMUST00000077243.5	1032	7	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_3	203.601462557506	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACGTTGCCTTCGGACTACT	NA	False	NA	-12	True	AATAAA	-17	NA	72502650	72480920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72481172_72489415_72489531_72490533_72490744_72496604_72496667_72498472_72498541_72501579_72501696_72502440
transcript_6166.nnic	chr10	+	1019	12	NNC	ENSMUSG00000078427.4	novel	1084	12	NA	NA	-36	0	at_least_one_novel_splicesite	FALSE	canonical	3	390	junction_1	1520.20222121546	114	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTTTTATTAGGTGTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	128657726	128713498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr10_+_128657841_128660647_128660701_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
transcript_61660.known	chrX	+	2419	8	FSM	ENSMUSG00000031375.18	ENSMUST00000033741.15	2419	8	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	0.451753951452626	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGAGTCTGTGTGCCAGTTCT	NA	False	NA	NA	False	ATTAAA	-17	NA	72527207	72539539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_72527369_72534384_72534637_72534923_72535037_72535553_72535768_72536328_72536440_72536568_72536663_72536805_72536945_72538204
transcript_61661.known	chrX	+	2722	4	FSM	ENSMUSG00000031383.9	ENSMUST00000019701.9	2722	4	0	0	0	0	multi-exon	TRUE	canonical	3	583	junction_1	9.62635271879577	129	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGAGAGGTTGTTGCTTCTT	NA	False	NA	28	True	AATAAA	-22	NA	72683024	72687120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_72683248_72683798_72684411_72684952_72685409_72685689
transcript_61663.nnic	chrX	-	1481	12	NNC	ENSMUSG00000002012.14	novel	1532	12	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_1	20.4110648974504	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGGTGCTGAACTGGG	NA	False	NA	-2	True	AATAAA	-15	NA	72703724	72699599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_72699940_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703624
transcript_61664.known	chrX	-	1492	12	FSM	ENSMUSG00000002012.14	ENSMUST00000114473.8	1492	12	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_11	19.8644164606543	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTCTGGTGCTGAACTGGG	NA	False	NA	-2	True	AATAAA	-15	NA	72703330	72699599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703272
transcript_61665.known	chrX	-	1532	12	FSM	ENSMUSG00000002012.14	ENSMUST00000114472.8	1532	12	0	0	0	0	multi-exon	FALSE	canonical	3	38	junction_11	13.5176652099123	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCTCTGGTGCTGAACTGG	NA	False	NA	-3	True	AATAAA	-14	NA	72703723	72699600	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72699993_72700275_72700421_72700517_72700606_72700676_72700756_72700836_72700950_72701043_72701120_72701325_72701450_72701624_72701764_72701859_72701935_72702293_72702426_72702785_72702856_72703624
transcript_61677.known	chrX	-	1219	8	FSM	ENSMUSG00000002015.6	ENSMUST00000002091.6	1219	8	0	0	0	0	multi-exon	FALSE	canonical	3	2403	junction_7	231.225131040053	1763	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTGTTTGTGTCTAACTGAG	NA	False	NA	-13	True	AATAAA	-17	NA	72759781	72729783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72730202_72731442_72731544_72732265_72732387_72733152_72733289_72750602_72750751_72756050_72756152_72758398_72758535_72759723
transcript_61682.known	chrX	+	3648	10	FSM	ENSMUSG00000031378.15	ENSMUST00000002084.14	3648	10	0	0	0	0	multi-exon	TRUE	canonical	3	38	junction_7	8.3901765016235	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTGCCTCCTGAACTTGGT	NA	False	NA	18	True	AGTAAA	-19	NA	72760202	72782140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_72761537_72764519_72764701_72772589_72772733_72772814_72772984_72774399_72774495_72777614_72777761_72778067_72778214_72780395_72780481_72780708_72780835_72780917
transcript_61686.nic	chrX	-	1326	13	NIC	ENSMUSG00000002010.18	novel	1331	13	NA	NA	-23	0	combination_of_known_junctions	TRUE	canonical	2	205	junction_10	516.424862771816	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830251	72822568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72825903_72825916_72826280_72826323_72830133
transcript_61687.known	chrX	-	1331	13	FSM	ENSMUSG00000002010.18	ENSMUST00000052761.9	1331	13	0	0	0	0	multi-exon	FALSE	canonical	2	205	junction_10	445.162891535222	1003	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824314_72824503_72824637_72824757_72824819_72825282_72825396_72825611_72825710_72825903_72825916_72826280_72826323_72830380
transcript_6169.known	chr10	+	918	11	FSM	ENSMUSG00000078427.4	ENSMUST00000105230.4	918	11	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_8	1099.33345259753	959	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGAAAAGAAAATGTGTTTT	NA	False	NA	NA	False	AATAAA	-6	NA	128657762	128713486	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128657841_128669180_128669281_128674312_128674360_128675670_128675739_128682400_128682453_128684105_128684180_128684629_128684659_128687025_128687052_128689051_128689121_128708289_128708380_128713201
transcript_61698.known	chrX	-	2080	10	FSM	ENSMUSG00000002010.18	ENSMUST00000156299.8	2080	10	0	0	0	0	multi-exon	FALSE	canonical	3	1120	junction_7	119.009596044257	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGGCCCTGTTCTTCCCTT	NA	False	NA	-28	True	AATAAA	-19	NA	72830503	72822568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72822778_72823071_72823133_72823219_72823315_72823582_72823730_72823818_72823922_72824179_72824637_72824757_72824819_72825282_72825396_72825611_72826323_72830380
transcript_61708.nnic	chrX	+	980	7	NNC	ENSMUSG00000002014.13	novel	800	6	NA	NA	-79	0	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_2	575.300621897418	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5353	False	NA	48	True	AATAAA	-30	NA	72830554	72834432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_72830913_72832440_72832560_72832660_72832760_72833405_72833481_72833636_72833727_72833964_72834031_72834259
transcript_61717.known	chrX	+	765	6	FSM	ENSMUSG00000002014.13	ENSMUST00000002090.3	765	6	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_1	441.755135793575	633	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACACGGGGCTCCTGTGTCT	5466	False	NA	48	True	AATAAA	-30	NA	72830667	72834432	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_72830913_72832443_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
transcript_61722.nic	chrX	+	1114	5	ISM	ENSMUSG00000002014.13	ENSMUST00000166518.8	800	6	-79	-6	-79	0	intron_retention	FALSE	canonical	3	1181	junction_1	174.03789098929	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGGGGCTCCTGTGTCTATGG	5353	False	NA	52	True	AATAAA	-34	NA	72830554	72834436	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_72830913_72832440_72832560_72833405_72833481_72833636_72833727_72833964
transcript_61727.known	chrX	+	619	4	FSM	ENSMUSG00000002014.13	ENSMUST00000155552.8	619	4	0	0	0	0	multi-exon	FALSE	canonical	3	1181	junction_1	200.077207319797	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGACCCCAGCACCTCCC	5588	False	NA	NA	False	NA	NA	NA	72830789	72833938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_72830913_72832440_72832560_72833405_72833481_72833636
transcript_61731.known	chrX	+	522	3	FSM	ENSMUSG00000002014.13	ENSMUST00000142829.2	522	3	0	0	0	0	multi-exon	FALSE	canonical	3	426	junction_1	615	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCATGCCCCATTTCTGAAGT	5669	False	NA	NA	False	NA	NA	NA	72830870	72833769	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_72830913_72832443_72832560_72833405
transcript_61732.known	chrX	+	2119	5	FSM	ENSMUSG00000002014.13	ENSMUST00000130738.8	2119	5	0	0	0	0	multi-exon	FALSE	canonical	3	1319	junction_4	120.079921302439	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATGAGTACATTCAAGACAC	5628	False	NA	33	True	AATAAA	-15	NA	72830829	72834417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_72832560_72833405_72833481_72833636_72833727_72833964_72834031_72834259
transcript_61733.known	chrX	-	3353	22	FSM	ENSMUSG00000031389.18	ENSMUST00000064376.13	3353	22	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_18	9.77989051592099	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAACATAGGTATGTCTATG	NA	False	NA	NA	False	AATACA	-28	NA	72954936	72937957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72938570_72939553_72939654_72939999_72940093_72940419_72940604_72940686_72940761_72940834_72941069_72941158_72941265_72941359_72941495_72941574_72941653_72941737_72941799_72943146_72943250_72943450_72943479_72943704_72943790_72943883_72944076_72944240_72944343_72947853_72948076_72948185_72948315_72949256_72949470_72949762_72949826_72950034_72950198_72950274_72950483_72954768
transcript_61735.known	chrX	-	797	8	FSM	ENSMUSG00000031388.15	ENSMUST00000114390.8	797	8	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_3	441.154607541508	112	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTACAATAAATGTCACCCAG	NA	False	NA	-48	True	NA	NA	NA	72965438	72960525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72960802_72961448_72961534_72963107_72963147_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
transcript_61737.known	chrX	-	979	8	FSM	ENSMUSG00000031388.15	ENSMUST00000114387.8	979	8	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	343.561063104701	779	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTGAATGTGCATAGTGG	NA	False	NA	-15	True	AATAAA	-24	NA	72965494	72960492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72960889_72961448_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
transcript_6174.known	chr10	+	4133	7	FSM	ENSMUSG00000025354.6	ENSMUST00000217745.2	4133	7	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_3	32.4242707448191	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATATGACTTTTGGAGCCC	4016	False	NA	NA	False	GATAAA	-30	NA	128641422	128655128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128641553_128642036_128643490_128649906_128650014_128650434_128650555_128652580_128652742_128652826_128652930_128653069
transcript_61749.known	chrX	-	892	7	FSM	ENSMUSG00000031388.15	ENSMUST00000096316.4	892	7	0	0	0	0	multi-exon	FALSE	canonical	3	1031	junction_1	37.306910292271	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCCTCCTGGGGAGGTACT	NA	False	NA	NA	False	ACTAAA	-29	NA	72965434	72961079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72961534_72963107_72963153_72963359_72963476_72963568_72963615_72964588_72964648_72964877_72964977_72965361
transcript_61769.known	chrX	-	1418	11	FSM	ENSMUSG00000031387.15	ENSMUST00000116578.8	1418	11	0	0	0	0	multi-exon	FALSE	canonical	3	1767	junction_7	141.190120050944	1776	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	72974456	72965726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973792_72973869_72974013_72974124_72974319
transcript_61772.known	chrX	-	1318	11	FSM	ENSMUSG00000031387.15	ENSMUST00000114379.8	1318	11	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_8	509.144390129166	470	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	72974398	72965726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72973834_72973869_72974013_72974124_72974319
transcript_6178.known	chr10	-	2335	5	FSM	ENSMUSG00000047090.14	ENSMUST00000051011.14	2335	5	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_4	8.20060973342836	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTGGGGAGATGCGCCTCTA	5737	False	NA	-7	True	AATAAA	-18	NA	128640239	128635904	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128637099_128637219_128637381_128637804_128638387_128638966_128639227_128640101
transcript_61790.nic	chrX	-	1367	10	NIC	ENSMUSG00000031387.15	novel	1418	11	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	3	225	junction_8	580.11297324607	320	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGCGCGCCTCTG	NA	False	NA	-2	True	AATAAA	-18	NA	72974481	72965726	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72972947_72973286_72973460_72973610_72973687_72974013_72974124_72974319
transcript_618.known	chr1	+	1485	2	FSM	ENSMUSG00000037216.6	ENSMUST00000041621.5	1485	2	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_1	0	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTCCTTTTCCTTAAGG	NA	False	NA	15	True	ATTAAA	-15	NA	37911286	37915309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_37911407_37913944
transcript_61813.known	chrX	-	2125	7	FSM	ENSMUSG00000031387.15	ENSMUST00000135711.8	2125	7	0	0	0	0	multi-exon	FALSE	canonical	3	1962	junction_4	102.832252830628	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATGCTTGTGTGCGCGCCTC	NA	False	NA	-4	True	AATAAA	-16	NA	72974423	72965728	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72965870_72965956_72966045_72969821_72969954_72971418_72971595_72971884_72971967_72972721_72974124_72974319
transcript_61817.known	chrX	-	1407	4	FSM	ENSMUSG00000031387.15	ENSMUST00000146371.8	1407	4	0	0	0	0	multi-exon	FALSE	canonical	3	2042	junction_3	97.9841256984461	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCATCATTGAGTTTGGGG	NA	False	NA	NA	False	NA	NA	NA	72974347	72971844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72971967_72972721_72973869_72974013_72974124_72974319
transcript_61818.known	chrX	-	416	3	FSM	ENSMUSG00000031387.15	ENSMUST00000135213.8	416	3	0	0	0	0	multi-exon	FALSE	canonical	3	1965	junction_1	27	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCTTGTGTGCGCGCCTCT	NA	False	NA	-3	True	AATAAA	-17	NA	72970007	72965727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_72965870_72965956_72966045_72969821
transcript_61819.known	chrX	-	10538	4	FSM	ENSMUSG00000031393.17	ENSMUST00000100750.10	10538	4	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_3	52.083266666624	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAAGGTCTGGGCTTTCAT	NA	False	NA	NA	False	GATAAA	-18	NA	73129275	73070197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_73080101_73080587_73080939_73123514_73123639_73129115
transcript_61820.known	chrX	-	1739	3	FSM	ENSMUSG00000031393.17	ENSMUST00000033770.13	1739	3	0	0	0	0	multi-exon	FALSE	canonical	3	119	junction_2	51.5	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAACTTAGAGTTTCGTGGC	NA	False	NA	NA	False	AATAAA	-22	NA	73129296	73078893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_73080101_73080587_73080939_73129115
transcript_61821.known	chrX	+	2473	13	FSM	ENSMUSG00000031397.12	ENSMUST00000010127.12	2473	13	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_9	3.8151743807532	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTTTATGCAGTTTGTGCC	6476	False	NA	6	True	AATAAA	-18	NA	73220864	73252106	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_73221030_73225389_73225505_73234827_73234926_73237124_73237317_73237399_73237528_73240589_73240784_73241245_73241411_73244203_73244361_73246136_73246268_73248479_73248564_73249479_73249577_73249950_73250071_73251279
transcript_61823.known	chrX	+	1595	6	FSM	ENSMUSG00000001964.15	ENSMUST00000002029.13	1595	6	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	18.1592951405059	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTATGTTTTGGTTGTGGG	NA	False	NA	NA	False	NA	NA	NA	73298292	73301493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73300612
transcript_61824.known	chrX	+	1338	6	FSM	ENSMUSG00000001964.15	ENSMUST00000088313.5	1338	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	106.854293315711	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGAAGG	NA	False	NA	NA	False	AATAAA	-13	NA	73298435	73305154	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_73298640_73298813_73298922_73299058_73299137_73299348_73299483_73300483_73300531_73304387
transcript_61827.known	chrX	+	614	3	FSM	ENSMUSG00000001964.15	ENSMUST00000129516.2	614	3	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_2	26.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGGAGGCCAGTTAAGGGG	NA	False	NA	NA	False	NA	NA	NA	73298366	73299291	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_73298640_73298813_73298922_73299058
transcript_61829.known	chrX	+	648	7	FSM	ENSMUSG00000008682.14	ENSMUST00000151702.8	648	7	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_1	3469.80780767786	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGTGGTCCTCTGGACAA	NA	False	NA	-98	True	AATATA	-6	NA	73314462	73316631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_73314485_73314584_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
transcript_6183.known	chr10	-	724	4	FSM	ENSMUSG00000025353.6	ENSMUST00000219524.2	724	4	0	0	0	0	multi-exon	FALSE	canonical	3	322	junction_3	240.049994792751	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCAGTCTTCATAGGG	NA	False	NA	NA	False	GATAAA	-45	NA	128657514	128654591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128654885_128655822_128655975_128656129_128656305_128657410
transcript_61832.known	chrX	+	855	6	FSM	ENSMUSG00000008682.14	ENSMUST00000074085.12	855	6	0	0	0	0	multi-exon	FALSE	canonical	3	7516	junction_1	832.521615335001	550	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTTTTGTTTCTGATTCTT	NA	False	NA	12	True	AATAAA	-22	NA	73314465	73316741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_73314631_73315265_73315325_73315405_73315514_73315784_73315924_73316277_73316441_73316520
transcript_6184.known	chr10	-	1573	4	FSM	ENSMUSG00000025353.6	ENSMUST00000026409.5	1573	4	0	0	0	0	multi-exon	FALSE	canonical	3	462	junction_3	176.577335905703	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATCAGTTTCCACTC	NA	False	NA	NA	False	AATAAA	-15	NA	128657463	128653770	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128654885_128655822_128655975_128656129_128656384_128657410
transcript_61844.known	chrX	+	1786	10	FSM	ENSMUSG00000009995.18	ENSMUST00000114180.11	1786	10	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_6	91.4165611600053	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATACCTCTGTCTTCTGTGTA	NA	False	NA	7	True	AATAAA	-20	NA	73326367	73333754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_73326723_73326877_73327007_73327253_73327300_73327537_73327624_73331624_73331706_73331783_73331826_73332053_73332120_73332267_73332321_73332710_73332789_73332904
transcript_6185.known	chr10	-	1051	4	FSM	ENSMUSG00000025353.6	ENSMUST00000219215.2	1051	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_3	384.57248991575	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCTCATAATGCTGGGGA	NA	False	NA	7	True	AATAAA	-45	NA	128657475	128654350	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128654885_128655822_128655975_128656129_128656430_128657410
transcript_61853.known	chrX	+	2189	10	FSM	ENSMUSG00000019087.14	ENSMUST00000019231.12	2189	10	0	0	0	0	multi-exon	TRUE	canonical	3	647	junction_4	26.5934179176579	1101	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAACAGTAGATTTTTTTTTC	NA	False	NA	46	True	NA	NA	NA	73340702	73348327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_73340928_73341228_73341356_73343855_73343931_73344183_73344378_73344929_73344971_73345541_73345628_73345967_73346207_73346827_73346876_73346963_73347193_73347402
transcript_61867.known	chrX	+	2666	11	FSM	ENSMUSG00000015291.11	ENSMUST00000015435.11	2666	11	0	0	0	0	multi-exon	FALSE	canonical	3	553	junction_5	84.5884152824723	297	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	5948	False	NA	15	True	AATAAA	-16	NA	73348603	73355468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351477_73351735_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
transcript_61868.nic	chrX	+	2914	10	NIC	ENSMUSG00000015291.11	novel	2666	11	NA	NA	-3	0	intron_retention	FALSE	canonical	3	728	junction_6	47.3648825477846	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGCTCTTTAGGTTCTC	5959	False	NA	15	True	AATAAA	-16	NA	73348614	73355468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_73349048_73350184_73350293_73350450_73350551_73350708_73350844_73351277_73351868_73352681_73352782_73353568_73353741_73353995_73354141_73354243_73354299_73354392
transcript_61873.known	chrX	+	1383	13	FSM	ENSMUSG00000001962.9	ENSMUST00000114160.2	1383	13	0	0	0	0	multi-exon	FALSE	canonical	3	663	junction_3	69.864700592566	697	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTATAAGAACCTGCGCTTTA	199	False	NA	NA	False	AATAAA	-33	NA	73356638	73363755	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_73356932_73358282_73358368_73358469_73358570_73359032_73359179_73361035_73361113_73361242_73361310_73361747_73361810_73361973_73362051_73362420_73362476_73362655_73362705_73362796_73362868_73362997_73363109_73363565
transcript_61888.nnic	chrX	-	688	4	NNC	ENSMUSG00000015289.5	novel	761	3	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_3	667.988522855495	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGCCTCTAAATTTTC	4455	False	NA	-18	True	AATAAA	-30	NA	73397262	73395766	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_73396105_73396479_73396609_73396930_73397052_73397162
transcript_61890.known	chrX	-	761	3	FSM	ENSMUSG00000015289.5	ENSMUST00000015433.4	761	3	0	0	0	0	multi-exon	FALSE	canonical	3	1433	junction_2	31	1059	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTCAGCCTCTAAATTTTC	4493	False	NA	-18	True	AATAAA	-30	NA	73397224	73395766	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_73396105_73396479_73396609_73396930
transcript_61892.known	chrX	-	746	3	FSM	ENSMUSG00000015289.5	ENSMUST00000114152.2	746	3	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	662	95	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTTCAGCCTCTAAATTTT	4536	False	NA	-19	True	AATAAA	-29	NA	73397181	73395767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_73396105_73396450_73396609_73396930
transcript_61895.known	chrX	-	1997	2	FSM	ENSMUSG00000015289.5	ENSMUST00000114153.2	1997	2	0	0	0	0	multi-exon	FALSE	canonical	3	1433	junction_1	0	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTCTTCTTAAGATTTT	4517	False	NA	NA	False	AATAAA	-23	NA	73397200	73394881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_73396609_73396930
transcript_61897.known	chrX	-	2442	4	FSM	ENSMUSG00000015290.16	ENSMUST00000155676.8	2442	4	0	0	0	0	multi-exon	FALSE	canonical	3	1598	junction_1	83.5636816379513	87	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAACTGAATCCTGTGTAATA	NA	False	NA	-6	True	AATAAA	-20	NA	73412279	73409323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_73411193_73411306_73411516_73411758_73411865_73412021
transcript_61899.known	chrX	-	2220	3	FSM	ENSMUSG00000015290.16	ENSMUST00000126117.2	2220	3	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	782.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACTGAATCCTGTGTAAT	NA	False	NA	-7	True	AATAAA	-19	NA	73412164	73409324	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_73411193_73411306_73411516_73412021
transcript_61902.known	chrX	-	2023	3	FSM	ENSMUSG00000032806.14	ENSMUST00000037967.6	2023	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	8.5	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCTCGGGTCCCTTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	73416955	73412822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_73414618_73416219_73416289_73416796
transcript_61903.known	chrX	-	1910	2	FSM	ENSMUSG00000032806.14	ENSMUST00000073067.11	1910	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAAGCTCGGGTCCCTTCCA	NA	False	NA	NA	False	AATAAA	-21	NA	73416911	73412822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_73414618_73416796
transcript_61904.nic	chrX	-	1484	10	NIC	ENSMUSG00000031399.16	novel	1586	10	NA	NA	5	0	combination_of_known_junctions	FALSE	canonical	3	22	junction_9	35.9828491381487	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTAATTTCTTGCAGTGGAAT	NA	False	NA	-48	True	AATAAA	-1	NA	73436856	73428366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_73429042_73430027_73430155_73430237_73430323_73430639_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280_73436354_73436704
transcript_61906.known	chrX	-	1899	9	FSM	ENSMUSG00000031399.16	ENSMUST00000114143.10	1899	9	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	16.2322017915007	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGAGAGTCAAGGGTGGTG	NA	False	NA	-6	True	AATAAA	-43	NA	73436878	73428324	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_73429042_73430027_73430155_73430237_73430323_73430639_73430691_73431043_73431103_73431233_73431358_73434079_73434104_73434596_73434711_73436280
transcript_61910.known	chrX	-	2652	13	FSM	ENSMUSG00000031400.11	ENSMUST00000004327.11	2652	13	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_8	19.8990507869653	136	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTGTCTCCTTGTTCTTTTC	NA	False	NA	-6	True	ATTAAA	-18	NA	73472800	73453088	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_73453904_73454002_73454096_73454188_73454266_73454362_73454599_73454863_73455051_73455170_73455265_73455571_73455698_73455924_73456084_73457469_73457688_73458513_73458623_73458721_73458760_73471657_73471786_73472428
transcript_61914.known	chrX	+	4530	10	FSM	ENSMUSG00000004221.17	ENSMUST00000064407.10	4530	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_3	31.82591536608	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGCATGCACTCTGTCCTCC	NA	False	NA	1	True	AATAAA	-15	NA	73473309	73495126	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_73473428_73476410_73476613_73477408_73477621_73480772_73480889_73482512_73482666_73483480_73483557_73486950_73487095_73487377_73487521_73491464_73491527_73491822
transcript_61917.nnic	chrX	-	858	3	NNC	ENSMUSG00000079536.2	novel	627	3	NA	NA	-145	170	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	11	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTTCATCTGATTTTACTT	NA	False	NA	NA	False	AATAAA	-13	NA	73525150	73523722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_73523967_73524226_73524343_73524652
transcript_61918.known	chrX	-	627	3	FSM	ENSMUSG00000079536.2	ENSMUST00000114125.2	627	3	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	3.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CATGTTACCAGATACAAGAA	NA	False	NA	NA	False	NA	NA	NA	73525005	73523892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_73524038_73524213_73524343_73524652
transcript_61919.known	chrX	+	776	3	FSM	ENSMUSG00000079532.2	ENSMUST00000114117.2	776	3	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	2.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	CAAAATAAAAAATAGCAAAT	NA	False	NA	NA	False	TTTAAA	-11	NA	73784532	73785794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_73784886_73785195_73785325_73785500
transcript_61924.known	chrX	-	750	3	FSM	ENSMUSG00000032750.14	ENSMUST00000127024.2	750	3	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	2	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAAAGTTCAATGTTTTTG	2179	False	NA	NA	False	NA	NA	NA	74012731	74011387	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_74011592_74011767_74011897_74012314
transcript_6193.known	chr10	-	666	3	FSM	ENSMUSG00000025353.6	ENSMUST00000217685.2	666	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_2	430	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGCTGTATATTTTTCTTAA	NA	False	NA	-63	True	NA	NA	NA	128657460	128654420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128654885_128655822_128655975_128657410
transcript_61936.known	chrX	+	2804	15	FSM	ENSMUSG00000031403.15	ENSMUST00000033776.15	2804	15	0	0	0	0	multi-exon	FALSE	canonical	3	1536	junction_9	499.509294922813	767	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGAATTTGCTTTTCCTT	NA	False	NA	34	True	ATTAAA	-21	NA	74139459	74153383	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_74139734_74140439_74140508_74140888_74140976_74142067_74142160_74142368_74142554_74143635_74143701_74144038_74144166_74144595_74144727_74146027_74146172_74147945_74148067_74149259_74149379_74149883_74149988_74150777_74150857_74151784_74151911_74152301
transcript_61964.known	chrX	-	2525	12	FSM	ENSMUSG00000031402.13	ENSMUST00000033775.9	2525	12	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_6	19.4626151487859	170	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTGCCAGTCCAAGATTAT	NA	False	NA	NA	False	AATAAA	-17	NA	74174622	74153338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_74154450_74155532_74155608_74155804_74156008_74157191_74157273_74157839_74157921_74159661_74159769_74161361_74161559_74165040_74165110_74167501_74167588_74168976_74169056_74169342_74169487_74174330
transcript_6197.known	chr10	+	2298	7	FSM	ENSMUSG00000025354.6	ENSMUST00000219508.2	2298	7	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	133.703236892588	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAGGGAAACATTTTAAA	4138	False	NA	7	True	TTTAAA	-8	NA	128641544	128653372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128641596_128642036_128643490_128649906_128650014_128650434_128650555_128652580_128652742_128652826_128652930_128653069
transcript_61977.known	chrX	+	2562	5	FSM	ENSMUSG00000031198.5	ENSMUST00000033541.5	2562	5	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	30.589009464185	221	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTCAGACTCCACTTGT	537	False	NA	NA	False	AATAAA	-21	NA	74426004	74440065	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_74426058_74430707_74430859_74434389_74434466_74435245_74435378_74437915
transcript_6198.known	chr10	+	1109	9	FSM	ENSMUSG00000025351.15	ENSMUST00000219317.2	1109	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	1695.03832921265	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGATGGTCTCAGTTTATC	NA	False	NA	35	True	ATTAAA	-27	NA	128736857	128748691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128737005_128744769_128744922_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
transcript_61981.known	chrX	-	980	6	FSM	ENSMUSG00000031200.17	ENSMUST00000114081.2	980	6	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	14.0370937162933	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCATCACCAAGGACTTGGT	NA	False	NA	NA	False	NA	NA	NA	74460194	74454382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_74454738_74454823_74454876_74454957_74455129_74455240_74455393_74459620_74459820_74460143
transcript_61983.nnic	chrX	-	826	4	NNC	ENSMUSG00000090110.9	novel	507	4	NA	NA	-13	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	27.1825107171668	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGGTTTGTTACTAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	74460203	74448451	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_74448825_74453151_74453220_74459620_74459820_74460017
transcript_61984.known	chrX	-	507	4	FSM	ENSMUSG00000090110.9	ENSMUST00000149863.3	507	4	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	9.20144916122817	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGTTTTATTTACTGTCCCT	NA	False	NA	NA	False	AGTAAA	-44	NA	74460190	74448631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_74448825_74453151_74453220_74459620_74459820_74460143
transcript_61986.known	chrX	-	992	3	FSM	ENSMUSG00000090110.9	ENSMUST00000033543.14	992	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	10	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTGGTTTGTTACTAAAT	NA	False	NA	NA	False	AATAAA	-17	NA	74460171	74448451	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_74448825_74453151_74453220_74459620
transcript_61987.known	chrX	+	4310	11	FSM	ENSMUSG00000031201.18	ENSMUST00000033544.14	4310	11	0	0	0	0	multi-exon	FALSE	canonical	1	239	junction_10	337.579694294547	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAATCTTTATGACTTTGG	NA	False	NA	NA	False	NA	NA	NA	74460233	74497607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289
transcript_61992.nnic	chrX	+	1128	11	NNC	ENSMUSG00000031201.18	novel	4310	11	NA	NA	15	1701	at_least_one_novel_splicesite	FALSE	canonical	1	27	junction_10	385.15219069869	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTGGTCATGGTATTTT	NA	False	NA	15	True	NA	NA	NA	74460248	74499308	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74499157
transcript_61994.known	chrX	+	2473	10	FSM	ENSMUSG00000031201.18	ENSMUST00000114074.8	2473	10	0	0	0	0	multi-exon	FALSE	canonical	1	349	junction_4	251.832836972818	241	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATGAAAAAAAGGTTGTCT	NA	False	NA	NA	False	NA	NA	NA	74460315	74495314	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_74460448_74461182_74461200_74462016_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574
transcript_61997.known	chrX	+	2521	9	FSM	ENSMUSG00000031201.18	ENSMUST00000151938.8	2521	9	0	0	0	0	multi-exon	FALSE	canonical	1	239	junction_8	357.490712291942	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAGATAATGTTGGAGGG	NA	False	NA	NA	False	NA	NA	NA	74460305	74494338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_74462072_74466384_74466505_74479070_74479159_74479711_74479801_74481541_74481598_74490761_74490894_74491408_74491453_74493574_74493752_74494289
transcript_61998.known	chrX	+	1595	6	FSM	ENSMUSG00000031197.12	ENSMUST00000033540.6	1595	6	0	0	0	0	multi-exon	FALSE	canonical	3	1794	junction_5	66.7580706731403	3261	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTGACAATTTTTTCATT	NA	False	NA	14	True	ATTAAA	-20	NA	74557904	74578548	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74574690_74574830_74577513
transcript_61999.known	chrX	+	632	5	FSM	ENSMUSG00000031197.12	ENSMUST00000114070.10	632	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_4	774.241685457455	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTAGTCCTTATTAGAAACTT	NA	False	NA	NA	False	AATAAA	-15	NA	74557904	74567652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_74558035_74560694_74560820_74564968_74565036_74566865_74566965_74567441
transcript_62001.known	chrX	-	3401	2	FSM	ENSMUSG00000031202.6	ENSMUST00000033545.6	3401	2	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATATGTGTGTTGTAGCTAT	442	False	NA	NA	False	AGTAAA	-28	NA	74621837	74615651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_74618614_74621398
transcript_62004.known	chrX	-	3149	16	FSM	ENSMUSG00000016382.16	ENSMUST00000114059.10	3149	16	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_13	28.3953047762008	89	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTCTCTTTTGTTTTAATGA	NA	False	NA	NA	False	AATAAA	-26	NA	74918788	74829259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_74830506_74834567_74834693_74834890_74835015_74837194_74837329_74837782_74837898_74838912_74838992_74839939_74840136_74843000_74843097_74844107_74844251_74845181_74845348_74846130_74846213_74848745_74848879_74849356_74849487_74859689_74859854_74870478_74870560_74918653
transcript_62009.known	chrX	+	5234	16	FSM	ENSMUSG00000025246.14	ENSMUST00000088217.12	5234	16	0	0	0	0	multi-exon	TRUE	canonical	3	377	junction_1	40.4669412401448	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGAACATAGTGACTGTGTT	NA	False	NA	12	True	AATAAA	-20	NA	76554618	76706589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_76554876_76677151_76677247_76684999_76685114_76687016_76687163_76689813_76690076_76691397_76691531_76691857_76692000_76692259_76692324_76692428_76692527_76693478_76693540_76693974_76694097_76696369_76696445_76696819_76696948_76699011_76699178_76702306_76702409_76703320
transcript_62011.known	chrX	-	4146	9	FSM	ENSMUSG00000035725.14	ENSMUST00000036333.14	4146	9	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_4	6.21992765231236	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTATTTGGGAGAGGGA	NA	False	NA	NA	False	NA	NA	NA	76839884	76805016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_76807498_76807711_76807861_76808178_76808257_76808954_76809013_76814852_76814949_76816721_76816842_76825643_76825908_76829733_76829903_76839153
transcript_62014.known	chrX	+	402	1	FSM	ENSMUSG00000081049.2	ENSMUST00000118723.2	402	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	23	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTGCGGTGACTTGATGTT	NA	False	NA	NA	False	AAAAAG	-13	NA	78238652	78239054	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_78238700_78239100
transcript_62018.known	chrX	-	1854	4	FSM	ENSMUSG00000046942.18	ENSMUST00000052283.7	1854	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	116.448367194316	77	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	0	True	AATAAA	-22	NA	78715041	78666836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_78668390_78671446_78671527_78685326_78685395_78714888
transcript_62019.known	chrX	-	1725	3	FSM	ENSMUSG00000046942.18	ENSMUST00000114016.10	1725	3	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	42	580	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTGCTCTCTTTTATTAC	NA	False	NA	0	True	AATAAA	-22	NA	78679188	78666836	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_78668390_78671446_78671527_78679096
transcript_62020.known	chrX	+	4007	3	FSM	ENSMUSG00000025666.17	ENSMUST00000026760.3	4007	3	0	0	0	0	multi-exon	TRUE	canonical	3	148	junction_2	10.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTCTTACTTTGTGTCTTC	NA	False	NA	18	True	ATTAAA	-24	NA	80114321	80141478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_80114767_80127896_80128038_80138057
transcript_62026.nic	chrX	+	2110	17	NIC	ENSMUSG00000045103.20	novel	4438	18	NA	NA	-39	88	combination_of_known_junctions	FALSE	canonical	3	247	junction_13	44.1996535619907	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCCGCATGGTTTTTATAA	NA	False	NA	7	True	AATAAA	-18	NA	84091861	84246192	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634_84187772_84188516_84188556_84192735_84192802_84193818_84193885_84196632_84196792_84221309_84221554_84222304_84222429_84234215_84234309_84246076
transcript_62028.known	chrX	+	1383	9	FSM	ENSMUSG00000045103.20	ENSMUST00000149433.2	1383	9	0	0	0	0	multi-exon	FALSE	canonical	3	282	junction_8	32.8916307744082	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAGAAAAAAAAAAAAAAAGA	NA	False	NA	NA	False	NA	NA	NA	84091927	84188017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933_84183101_84185331_84185444_84187634
transcript_62029.known	chrX	+	2133	7	FSM	ENSMUSG00000045103.20	ENSMUST00000132333.8	2133	7	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_3	27.9011150713053	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	ATAAAAGAAAAAAAAAAGTA	NA	False	NA	NA	False	NA	NA	NA	84091924	84184342	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_84092066_84097576_84097639_84133422_84133498_84148749_84148952_84151185_84151272_84153548_84153707_84182933
transcript_6203.known	chr10	+	1063	8	FSM	ENSMUSG00000025351.15	ENSMUST00000026407.9	1063	8	0	0	0	0	multi-exon	FALSE	canonical	3	3700	junction_1	227.971623726484	3047	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TAAAAAAGGAGATGGTCTCA	354	False	NA	28	True	ATTAAA	-20	NA	128745567	128748684	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_+_128745828_128746263_128746341_128747320_128747510_128747663_128747739_128747836_128747933_128748029_128748171_128748306_128748391_128748543
transcript_62030.known	chrX	-	4279	21	FSM	ENSMUSG00000025059.17	ENSMUST00000113978.9	4279	21	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_12	44.8534000940843	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTTTCTGTCTCTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	84820259	84745542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_84748003_84749843_84749931_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84782827_84782846_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
transcript_62033.known	chrX	-	4245	20	FSM	ENSMUSG00000025059.17	ENSMUST00000156390.8	4245	20	0	0	0	0	multi-exon	TRUE	canonical	3	125	junction_19	13.2977827073068	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTTCTTTCTGTCTCTTT	NA	False	NA	NA	False	ATTAAA	-16	NA	84820243	84745542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_84748003_84749843_84749931_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
transcript_62035.nic	chrX	-	1938	19	NIC	ENSMUSG00000025059.17	novel	778	8	NA	NA	-34	0	combination_of_known_junctions	FALSE	canonical	1	1	junction_1	37.4737768395085	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTTTCAGCAGTATT	NA	False	NA	NA	False	AATAAA	-18	NA	84820293	84750601	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_84750792_84754656_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
transcript_62037.nic	chrX	-	2057	18	ISM	ENSMUSG00000025059.17	ENSMUST00000156390.8	4245	20	-50	8805	-34	1653	5prime_fragment	FALSE	canonical	3	125	junction_17	13.834163619279	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAACTAGACTCTTCTTATT	NA	False	NA	NA	False	AGTAAA	-34	NA	84820293	84754347	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_84754738_84755947_84756092_84756204_84756326_84756879_84756965_84757947_84758045_84759270_84759350_84773807_84773889_84774488_84774532_84780438_84780507_84780919_84780956_84783900_84783968_84784672_84784783_84787319_84787458_84789830_84789908_84797937_84798016_84804180_84804288_84804939_84805014_84820031
transcript_62041.known	chrX	+	1808	2	FSM	ENSMUSG00000025056.5	ENSMUST00000026036.5	1808	2	0	0	0	0	multi-exon	FALSE	canonical	3	839	junction_1	0	742	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGGACTGGAGAGTTTTCTTG	NA	False	NA	11	True	AATAAA	-23	NA	85235369	85239553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_85236581_85238956
transcript_62043.nnic	chrX	-	2247	4	NNC	ENSMUSG00000035427.19	novel	2403	3	NA	NA	-58	5	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	13.589211407093	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTTTATTCTTTGCTCA	NA	False	NA	NA	False	AATAAA	-17	NA	85299883	85293854	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_85294575_85294793_85296089_85298945_85299028_85299733
transcript_62044.nnic	chrX	-	2181	3	NNC	ENSMUSG00000035427.19	novel	2401	3	NA	NA	-36	-49163	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_1	13	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATTTTATTCTTTGCTCAAT	NA	False	NA	NA	False	AATAAA	-19	NA	85348735	85343024	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_85344996_85347819_85347902_85348607
transcript_62045.known	chrX	-	2403	3	FSM	ENSMUSG00000035427.19	ENSMUST00000113969.10	2403	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	2.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAGAGATTTTATTCTTT	NA	False	NA	NA	False	AATAAA	-12	NA	85299825	85293859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_85296089_85298945_85299028_85299733
transcript_62046.nnic	chrX	-	1527	2	Genic_Genomic	ENSMUSG00000080069.3	novel	1023	1	NA	NA	-9169	380	multi-exon	FALSE	canonical	3	24	junction_1	0	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACAATGACTCAGATGTTT	NA	False	NA	NA	False	NA	NA	NA	85398620	85388048	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chrX_-_85389457_85398501
transcript_62047.known	chrX	-	842	1	FSM	ENSMUSG00000097961.2	ENSMUST00000182943.2	842	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	87803918	87803076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_87803100_87803900
transcript_62048.nnic	chrX	+	1662	3	Genic_Genomic	ENSMUSG00000094861.2	novel	1035	1	NA	NA	-975	475	multi-exon	FALSE	canonical	2	3	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCAGTGTCTCTGTCATTTC	NA	False	NA	NA	False	AATAAA	-21	NA	90435130	90437615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chrX_+_90435200_90435916_90435973_90436078
transcript_62051.known	chrX	+	577	2	FSM	ENSMUSG00000095110.2	ENSMUST00000088134.4	577	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATCTGTCTCTGAGAATCT	NA	False	NA	NA	False	AATAAA	-19	NA	92199759	92200479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_92199990_92200132
transcript_62052.known	chrX	-	5346	37	FSM	ENSMUSG00000006678.7	ENSMUST00000006856.3	5346	37	0	0	0	0	multi-exon	FALSE	canonical	3	370	junction_20	43.7489682418023	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGTTACTGTGTTTTGTTTTG	4277	False	NA	-2	True	AATAAA	-19	NA	92675761	92348372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_92349423_92419196_92419291_92464172_92464290_92504974_92505107_92506899_92507079_92517918_92518094_92524084_92524217_92531700_92531834_92534348_92534555_92536324_92536418_92537154_92537188_92604973_92605097_92605475_92605626_92616713_92616839_92619384_92619485_92621102_92621223_92621682_92621813_92624327_92624504_92625623_92625741_92628191_92628282_92629449_92629512_92630603_92630689_92635011_92635167_92637424_92637564_92638379_92638455_92639720_92639838_92640823_92640937_92646806_92646980_92647067_92647270_92647515_92647604_92648012_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
transcript_62055.nic	chrX	-	640	7	ISM	ENSMUSG00000006678.7	ENSMUST00000006856.3	5346	37	-25	299687	-25	18622	5prime_fragment	FALSE	canonical	3	401	junction_2	32.1645076995678	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATCTACTGGGGCTTTGCTC	4252	False	NA	NA	False	AAGAAA	-5	NA	92675786	92648059	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_92648106_92648956_92649020_92649453_92649570_92664110_92664192_92667424_92667522_92670093_92670219_92675674
transcript_62057.known	chrX	+	4888	8	FSM	ENSMUSG00000035246.17	ENSMUST00000045898.4	4888	8	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_6	4.01527694930148	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGGTTGCCTTGTTTATT	NA	False	NA	4	True	AATAAA	-17	NA	92718707	92793557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_92719083_92745690_92745791_92750163_92750281_92761390_92761543_92763784_92763864_92775282_92775426_92778370_92778560_92789824
transcript_62063.known	chrX	-	2115	12	FSM	ENSMUSG00000035232.9	ENSMUST00000045748.7	2115	12	0	0	0	0	multi-exon	FALSE	canonical	3	493	junction_5	23.1352473386711	46	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAACACCTTGGTTTGAAAGA	NA	False	NA	-2	True	ATTAAA	-33	NA	92875807	92808212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_92808862_92812494_92812635_92820914_92821029_92825072_92825184_92825751_92825854_92827385_92827463_92832499_92832578_92843719_92843810_92845814_92846000_92852476_92852549_92857532_92857675_92875452
transcript_62068.known	chrX	-	6933	8	FSM	ENSMUSG00000079509.11	ENSMUST00000113927.8	6933	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	34.1317973719043	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTAGTGGAGTGTTGGCT	NA	False	NA	-2	True	AATAAA	-21	NA	93167013	93118237	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_93123586_93124325_93124467_93124942_93125093_93125430_93125575_93125755_93125906_93141888_93142459_93145896_93145987_93166673
transcript_62069.known	chrX	-	879	4	FSM	ENSMUSG00000079509.11	ENSMUST00000113925.8	879	4	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_3	30.6920185064456	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACCTTGTCCAGGTGTGATG	NA	False	NA	NA	False	ATTAAA	-28	NA	93166715	93141779	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_93142459_93145896_93145987_93157801_93157870_93166673
transcript_62072.known	chrX	-	3647	12	FSM	ENSMUSG00000035150.16	ENSMUST00000050328.15	3647	12	0	0	0	0	multi-exon	TRUE	canonical	3	1008	junction_2	64.9970120101527	255	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAATTGTGCCCATGTGTTT	NA	False	NA	-2	True	AATAAA	-21	NA	93256315	93232312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_93234529_93239877_93240051_93240893_93241064_93243319_93243465_93244495_93244591_93246419_93246555_93247555_93247715_93248654_93248750_93252934_93253057_93253141_93253270_93255324_93255389_93256170
transcript_62082.nic	chrX	+	1146	5	NIC	ENSMUSG00000043929.17	novel	627	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_1	18.9868375460475	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCAGCCTGGCATGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	93278204	93297673	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_93278260_93278826_93279027_93285550_93285602_93296020_93296733_93297545
transcript_62083.known	chrX	+	1227	5	FSM	ENSMUSG00000043929.17	ENSMUST00000113911.9	1227	5	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_4	15.1224171348366	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCAGCAGCCTGGCATGTTT	NA	False	NA	NA	False	AATAAA	-24	NA	93278595	93297673	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_93278732_93278826_93279027_93285550_93285602_93296020_93296733_93297545
transcript_62085.known	chrX	+	1235	4	FSM	ENSMUSG00000043929.17	ENSMUST00000113908.8	1235	4	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	24.3447461820136	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACTCAGCAGCCTGGCAT	NA	False	NA	NA	False	AATAAA	-20	NA	93278532	93297669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_93278732_93278826_93279027_93296020_93296733_93297545
transcript_62090.known	chrX	+	784	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113898.8	784	9	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_1	51.8975854447969	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTTTGGGTGATGCCATA	NA	False	NA	NA	False	AGTAAA	-39	NA	93410722	93460567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_93410769_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
transcript_62091.known	chrX	+	1173	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113895.2	1173	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	144.775688566831	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTGCTTTCTTTACT	NA	False	NA	NA	False	ATTAAA	-18	NA	93410788	93460699	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_93411092_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
transcript_62092.known	chrX	+	1032	9	FSM	ENSMUSG00000079508.9	ENSMUST00000113896.8	1032	9	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	148.965547610849	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCCTGCTTTCTTTACT	NA	False	NA	NA	False	ATTAAA	-18	NA	93410770	93460699	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_93410933_93423531_93423640_93425716_93425837_93431270_93431326_93434350_93434447_93437794_93437887_93441727_93441809_93456065_93456132_93460447
transcript_62095.known	chrX	-	2821	13	FSM	ENSMUSG00000025151.17	ENSMUST00000026142.8	2821	13	0	0	0	0	multi-exon	TRUE	canonical	3	1240	junction_10	166.264514821681	141	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAAGTGTGCTTCTCATCTT	NA	False	NA	-2	True	AATAAA	-21	NA	93585749	93579079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581362_93581579_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
transcript_62097.known	chrX	-	2884	12	FSM	ENSMUSG00000025151.17	ENSMUST00000153386.8	2884	12	0	0	0	0	multi-exon	FALSE	canonical	3	1240	junction_9	165.668493041908	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTAAGTGTGCTTCTCATC	NA	False	NA	-4	True	AATAAA	-19	NA	93585596	93579081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_93579284_93579465_93579852_93580479_93580595_93580899_93580963_93581147_93581191_93581281_93581672_93581789_93581870_93582050_93582115_93582212_93582888_93583460_93584154_93584856_93584931_93585497
transcript_621.known	chr1	+	969	6	FSM	ENSMUSG00000026087.12	ENSMUST00000027256.12	969	6	0	0	0	0	multi-exon	FALSE	canonical	3	545	junction_1	191.904559612324	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTAGTAGTCAGTCTTGTG	NA	False	NA	NA	False	NA	NA	NA	37929557	37937616	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_37929666_37932023_37932105_37933019_37933097_37934410_37934492_37936768_37936916_37937141
transcript_62105.known	chrX	+	2491	1	FSM	ENSMUSG00000071723.8	ENSMUST00000096368.4	2491	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAATGTGTTTGAATAATGCT	4256	False	NA	22	True	AATAAA	-28	NA	93679674	93682165	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_93679700_93682200
transcript_62106.known	chrX	+	1925	5	FSM	ENSMUSG00000071723.8	ENSMUST00000137033.2	1925	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.1720402163943	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGTTATGTTGGTCATAAT	4263	False	NA	2	True	NA	NA	NA	93679681	93686850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_93680182_93681851_93681987_93682698_93682841_93684531_93685195_93686365
transcript_62107.known	chrX	-	4173	1	FSM	ENSMUSG00000071722.5	ENSMUST00000096367.5	4173	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATAATAGTAGTGACTTTTG	NA	False	NA	NA	False	AATAAA	-25	NA	94070288	94066115	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_94066100_94070300
transcript_62108.known	chrX	-	8496	2	FSM	ENSMUSG00000050332.8	ENSMUST00000084535.6	8496	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	33	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAAGTGTTTTCTTGTTGT	NA	False	NA	NA	False	AATAAA	-30	NA	94488478	94463923	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_94472205_94488263
transcript_62109.known	chrX	-	2219	5	FSM	ENSMUSG00000035062.14	ENSMUST00000044382.7	2219	5	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	3.76662979332984	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATAAATGCTAACTGAGTGC	881	False	NA	NA	False	AATAAA	-15	NA	94702115	94682804	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_94684258_94685769_94685933_94686913_94687087_94688912_94689085_94701857
transcript_62110.known	chrX	-	2530	13	FSM	ENSMUSG00000057421.13	ENSMUST00000079987.13	2530	13	0	0	0	0	multi-exon	FALSE	canonical	3	815	junction_5	66.9966831683148	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTCATGGTGTTTGT	NA	False	NA	-36	True	AATAAA	-4	NA	95000519	94978940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
transcript_62111.known	chrX	-	2581	14	FSM	ENSMUSG00000057421.13	ENSMUST00000113864.3	2581	14	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_5	331.353544718678	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTTTGTCATGGTGTTTGT	NA	False	NA	-36	True	AATAAA	-4	NA	95000519	94978940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_94979256_94980977_94981129_94983904_94984555_94990016_94990165_94990472_94990680_94991003_94991055_94991375_94991462_94993942_94994053_94994915_94994963_94995513_94995796_94996827_94996910_94998747_94998818_94999480_94999607_95000263
transcript_62113.known	chrX	+	3842	13	FSM	ENSMUSG00000031207.17	ENSMUST00000117399.2	3842	13	0	0	0	0	multi-exon	FALSE	canonical	3	982	junction_10	94.3325971702724	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTATGACTCAGTCTTTCTG	NA	False	NA	6	True	AATAAA	-16	NA	95139647	95212158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129_95196405_95197900_95197985_95199069_95199217_95201452_95201550_95203693_95203858_95206972_95207104_95207355_95207517_95208980_95209074_95209530_95209756_95210075
transcript_62114.known	chrX	+	1883	4	FSM	ENSMUSG00000031207.17	ENSMUST00000149985.8	1883	4	0	0	0	0	multi-exon	FALSE	canonical	3	1220	junction_3	48.6095555306659	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	95139662	95197645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_95139850_95185470_95185555_95194225_95194322_95196129
transcript_62116.known	chrX	+	621	1	FSM	ENSMUSG00000082035.2	ENSMUST00000118924.2	621	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1795	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-30	NA	95528464	95529085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_95528500_95529100
transcript_62117.nnic	chrX	-	1235	8	NNC	ENSMUSG00000034457.11	novel	779	6	NA	NA	-26	38384	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_2	50.6117676080194	10	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTCTCAGTGTTCATCCTT	NA	False	NA	NA	False	AATAAA	-34	NA	96420848	96339061	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_96339435_96340422_96340518_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
transcript_62118.known	chrX	-	2153	7	FSM	ENSMUSG00000034457.11	ENSMUST00000126283.8	2153	7	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_5	9.18331820930394	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGTTCACAAGTGTAAAAAGC	NA	False	NA	NA	False	ATTAAA	-17	NA	96420822	96381396	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_96382809_96385233_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
transcript_62120.known	chrX	-	779	6	FSM	ENSMUSG00000034457.11	ENSMUST00000126609.2	779	6	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_4	10.0119928086271	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAGGAAT	NA	False	NA	NA	False	GGGGCT	-33	NA	96420778	96385151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_96385399_96386897_96386984_96387501_96387681_96405366_96405465_96414764_96414862_96420706
transcript_62121.nic	chrX	+	1115	8	NIC	ENSMUSG00000047694.13	novel	690	7	NA	NA	-166	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_1	83.3886890974295	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTGATATTTGCAAGGCT	NA	False	NA	26	True	ATTAAA	-36	NA	97980712	97988737	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_97980928_97981791_97981895_97983378_97983508_97983727_97983807_97984392_97984436_97986383_97986513_97987083_97987242_97988478
transcript_62122.known	chrX	+	3258	5	FSM	ENSMUSG00000031217.9	ENSMUST00000052839.7	3258	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	5.76085931090146	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	TAAAAAAAAAAAAAAAAATT	NA	False	NA	52	True	NA	NA	NA	98179735	98192597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_98180620_98188897_98189176_98190083_98190177_98190357_98190484_98190720
transcript_62124.known	chrX	+	361	3	FSM	ENSMUSG00000085553.2	ENSMUST00000129259.2	361	3	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	0.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTGGGAGAGAAAACAGACCA	NA	False	NA	NA	False	NA	NA	NA	98502630	98504359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_98502763_98503182_98503300_98504247
transcript_62125.known	chrX	-	1676	3	FSM	ENSMUSG00000034403.17	ENSMUST00000113797.4	1676	3	0	0	0	0	multi-exon	TRUE	canonical	1	2	junction_1	188.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTTATTAAAGTTCTTCTT	NA	False	NA	-36	True	NA	NA	NA	98514278	98509751	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_98511180_98511728_98511921_98514222
transcript_62130.known	chrX	-	2666	2	FSM	ENSMUSG00000034403.17	ENSMUST00000167246.2	2666	2	0	0	0	0	multi-exon	FALSE	canonical	3	379	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAATAAAAATAAATAAAT	NA	False	NA	NA	False	AAAACA	-20	NA	98514341	98509373	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_98511921_98514222
transcript_62132.known	chrX	-	2563	2	FSM	ENSMUSG00000034403.17	ENSMUST00000036354.7	2563	2	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAACAATGGCATCATTTGG	NA	False	NA	-4	True	ATTAAA	-22	NA	98514298	98509719	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_98512207_98514222
transcript_62138.known	chrX	+	1518	6	FSM	ENSMUSG00000031221.8	ENSMUST00000033570.6	1518	6	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_5	20.4743742273116	723	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTGCCTGGACTTTGTCCT	NA	False	NA	NA	False	NA	NA	NA	99537896	99559731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_99538163_99538510_99538805_99546600_99546797_99548795_99548876_99549545_99549659_99559162
transcript_62140.known	chrX	+	4983	30	FSM	ENSMUSG00000034311.4	ENSMUST00000048962.4	4983	30	0	0	0	0	multi-exon	TRUE	canonical	3	204	junction_20	20.3345386022518	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGAAGGAGATCCTTCTAT	NA	False	NA	18	True	AATAAA	-22	NA	99669342	99770820	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_99670195_99670309_99670425_99677444_99677636_99679289_99679383_99681889_99682057_99682282_99682378_99708341_99708459_99709278_99709455_99713514_99713577_99720892_99721026_99723451_99723511_99723614_99723721_99732663_99732721_99734119_99734306_99738476_99738581_99739603_99739749_99741036_99741148_99747647_99747732_99748395_99748510_99755397_99755554_99755667_99755769_99757483_99757614_99759186_99759358_99759876_99759985_99760936_99761015_99761542_99761642_99762099_99762277_99768247_99768365_99769733_99769857_99770064
transcript_62145.known	chrX	-	1041	7	FSM	ENSMUSG00000015668.14	ENSMUST00000059099.7	1041	7	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_6	158.307366291724	134	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGAATAAACGTGGCTTGAG	NA	False	NA	-29	True	AGTAAA	-10	NA	99669541	99666513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669421
transcript_62146.nnic	chrX	-	1024	7	NNC	ENSMUSG00000015668.14	novel	1626	7	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	208.783314041669	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTGCTTGAATATAAAAT	NA	False	NA	-4	True	AATAAA	-17	NA	99669553	99666488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669475
transcript_62150.known	chrX	-	1626	7	FSM	ENSMUSG00000015668.14	ENSMUST00000015812.12	1626	7	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_6	98.6728601659713	255	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACTACTGCTTGAATATAA	NA	False	NA	-7	True	AATAAA	-14	NA	99670174	99666491	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893_99668994_99669491
transcript_62151.known	chrX	-	1497	6	FSM	ENSMUSG00000015668.14	ENSMUST00000144643.8	1497	6	0	0	0	0	multi-exon	FALSE	canonical	3	516	junction_1	29.9506260368627	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTACTGCTTGAATATAAAAT	NA	False	NA	-4	True	AATAAA	-17	NA	99669544	99666488	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_99667034_99667188_99667250_99667467_99667567_99668138_99668196_99668400_99668485_99668893
transcript_62152.known	chrX	+	3692	14	FSM	ENSMUSG00000000881.13	ENSMUST00000113735.3	3692	14	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_2	29.3332212656995	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATGGCTCAGAGGTCTT	NA	False	NA	NA	False	AATAAA	-15	NA	99818346	99862014	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_99818551_99819412_99819570_99819984_99820088_99840291_99840407_99850117_99850295_99850785_99850862_99851658_99851759_99855107_99855150_99856331_99856383_99856942_99857045_99857809_99857983_99858398_99858509_99858813_99858906_99859824
transcript_62153.known	chrX	+	3316	12	FSM	ENSMUSG00000000881.13	ENSMUST00000151020.8	3316	12	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	11.5078126534158	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACAATGGCTCAGAGGTCTT	699	False	NA	NA	False	AATAAA	-15	NA	99820890	99862014	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_99820979_99840291_99840407_99850117_99850295_99850785_99850862_99851658_99851759_99855107_99855150_99856331_99856383_99856942_99857045_99857809_99857983_99858398_99858509_99858813_99858906_99859824
transcript_62156.known	chrX	-	3250	30	FSM	ENSMUSG00000009670.12	ENSMUST00000009814.10	3250	30	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_17	8.2193472636908	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCATTGATCAGCTGATT	NA	False	NA	-5	True	AATAAA	-16	NA	100103245	99882253	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_99882667_99883306_99883472_99892654_99892776_99893874_99893984_99895431_99895582_99920141_99920215_99923582_99923700_99925849_99925921_99926528_99926616_99927967_99928009_99947363_99947421_99949724_99949811_99960131_99960257_99976993_99977097_99990261_99990400_99995170_99995257_99998305_99998458_100015699_100015779_100018785_100018868_100021229_100021326_100029298_100029354_100051308_100051395_100059149_100059231_100076103_100076224_100076306_100076388_100082652_100082733_100087046_100087132_100094064_100094187_100102961_100103024_100103118
transcript_62157.known	chrX	-	2591	25	FSM	ENSMUSG00000009670.12	ENSMUST00000113716.3	2591	25	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	14.9015286315047	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTCTGCTAAGTTTAACAT	NA	False	NA	NA	False	NA	NA	NA	100103273	99921487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_99921832_99923582_99923700_99925849_99925921_99926528_99926616_99927967_99928009_99947363_99947421_99949724_99949811_99960131_99960257_99976993_99977097_99990261_99990400_99995170_99995257_99998305_99998458_100015699_100015779_100018785_100018868_100021229_100021326_100029298_100029354_100051308_100051395_100059149_100059231_100076103_100076224_100076306_100076388_100082652_100082733_100087046_100087132_100094064_100094187_100102961_100103024_100103118
transcript_62158.known	chrX	-	3278	30	FSM	ENSMUSG00000009670.12	ENSMUST00000113718.8	3278	30	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_6	15.4932381399703	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCCATTGATCAGCTGATT	NA	False	NA	-5	True	AATAAA	-16	NA	100103273	99882253	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_99882667_99883306_99883472_99892654_99892776_99893874_99893984_99895431_99895582_99920141_99920217_99923584_99923700_99925849_99925921_99926528_99926616_99927967_99928009_99947363_99947421_99949724_99949811_99960131_99960257_99976993_99977097_99990261_99990400_99995170_99995257_99998305_99998458_100015699_100015779_100018785_100018868_100021229_100021326_100029298_100029354_100051308_100051395_100059149_100059231_100076103_100076224_100076306_100076388_100082652_100082733_100087046_100087132_100094064_100094187_100102961_100103024_100103118
transcript_62167.known	chrX	-	2750	13	FSM	ENSMUSG00000031297.15	ENSMUST00000113710.8	2750	13	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_12	396.021464064765	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAACCAAAAAACC	NA	False	NA	NA	False	ATTAAA	-11	NA	100129626	100122827	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877_100129064_100129193
transcript_62168.nnic	chrX	-	2251	12	NNC	ENSMUSG00000031297.15	novel	2232	12	NA	NA	91	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_11	409.125251083797	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAACCTGTCCTGTTCTT	NA	False	NA	NA	False	ATTAAA	-23	NA	100128867	100122815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128759
transcript_6217.known	chr10	-	550	4	FSM	ENSMUSG00000090247.8	ENSMUST00000026405.10	550	4	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_1	37.4788829431544	302	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTGGTGTGTTTGAAGGAG	NA	False	NA	-1	True	AATAAA	-19	NA	128759393	128755782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128755977_128756427_128756561_128758522_128758596_128759243
transcript_62170.known	chrX	-	2371	13	FSM	ENSMUSG00000031297.15	ENSMUST00000101362.8	2371	13	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_12	497.596780089618	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAACCAAAAAACCT	NA	False	NA	NA	False	ATTAAA	-12	NA	100128958	100122826	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_100123199_100123305_100123415_100123706_100123874_100124313_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128426_100128585_100128877
transcript_62171.known	chrX	-	2717	11	FSM	ENSMUSG00000031297.15	ENSMUST00000138162.2	2717	11	0	0	0	0	multi-exon	FALSE	canonical	3	1250	junction_10	85.0282306060758	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAAACCTGTCCTGTTCTT	NA	False	NA	NA	False	ATTAAA	-23	NA	100129011	100122815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_100123199_100123305_100123415_100123706_100124478_100125301_100125405_100125498_100125639_100125796_100126020_100126139_100126253_100126396_100126575_100126753_100126913_100127476_100127881_100128877
transcript_62178.known	chrX	-	1114	6	FSM	ENSMUSG00000046032.17	ENSMUST00000156473.8	1114	6	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_2	126.702170462861	125	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTTCTCAGCTAGTTTCT	NA	False	NA	-11	True	NA	NA	NA	100266159	100141391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_100141834_100145973_100146042_100257379_100257471_100258006_100258132_100259088_100259185_100265867
transcript_62179.known	chrX	-	1002	5	FSM	ENSMUSG00000046032.17	ENSMUST00000077876.4	1002	5	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_1	142.088880634622	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100266169	100255564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_100255953_100257379_100257471_100258006_100258132_100259088_100259185_100265867
transcript_62180.known	chrX	-	2415	4	FSM	ENSMUSG00000046032.17	ENSMUST00000120389.8	2415	4	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_3	23.8094285712381	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTCCGTTTTTCTCCTTAA	NA	False	NA	-15	True	ATTAAA	-15	NA	100266155	100255564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_100257471_100258006_100258132_100259088_100259185_100265867
transcript_62182.known	chrX	-	1670	8	FSM	ENSMUSG00000031304.19	ENSMUST00000033664.14	1670	8	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	5.61702950038214	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTTACAGGGGTTGGG	NA	False	NA	NA	False	AATAAA	-26	NA	100311861	100307983	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_100308644_100308981_100309049_100309235_100309333_100309786_100309950_100310583_100310727_100310916_100311102_100311316_100311471_100311660
transcript_62186.known	chrX	+	1585	2	FSM	ENSMUSG00000047797.15	ENSMUST00000119190.2	1585	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTGTTTTGAGTGTTGAA	NA	False	NA	NA	False	ATTAAA	-22	NA	100427341	100429235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_100427449_100427757
transcript_62189.nic	chrX	-	1895	7	ISM	ENSMUSG00000031310.17	ENSMUST00000121520.8	5564	25	60	10549	6	0	5prime_fragment	FALSE	canonical	3	74	junction_4	23.7065391822594	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCAGCCTCTCCTT	NA	False	NA	-4	True	NA	NA	NA	100463460	100458538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_100459013_100459366_100459545_100459772_100460068_100460514_100460582_100460892_100460937_100461878_100462559_100463303
transcript_62191.known	chrX	-	1859	7	FSM	ENSMUSG00000031310.17	ENSMUST00000120201.8	1859	7	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_4	20.0637871688163	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCTCAGCCTCTCCTTCCC	NA	False	NA	-1	True	NA	NA	NA	100463415	100458535	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_100459013_100459366_100459545_100459772_100460068_100460514_100460588_100460892_100460937_100461878_100462559_100463303
transcript_6220.known	chr10	-	361	2	FSM	ENSMUSG00000090247.8	ENSMUST00000143628.2	361	2	0	0	0	0	multi-exon	FALSE	canonical	3	623	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTCAGCTTTCACTCTCT	NA	False	NA	NA	False	NA	NA	NA	128759393	128758384	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr10_-_128758596_128759243
transcript_62201.known	chrX	-	1593	6	FSM	ENSMUSG00000031310.17	ENSMUST00000117637.8	1593	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	47.004680617998	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCAGCCTCAGCCTCTCCTT	NA	False	NA	-4	True	NA	NA	NA	100463447	100458538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_100459013_100459366_100459545_100460514_100460588_100460892_100460937_100461878_100462559_100463303
transcript_62202.known	chrX	-	1502	6	FSM	ENSMUSG00000031310.17	ENSMUST00000118092.8	1502	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	50.7014792683606	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAAACCCAGCCTCAGCCTC	NA	False	NA	-9	True	NA	NA	NA	100463822	100458543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_100459013_100459366_100459545_100460514_100460588_100460892_100460937_100461878_100462559_100463764
transcript_62212.known	chrX	+	2562	12	FSM	ENSMUSG00000031311.18	ENSMUST00000033673.7	2562	12	0	0	0	0	multi-exon	FALSE	canonical	3	3075	junction_4	297.011255595496	1839	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	20	True	ATTAAA	-21	NA	100473160	100492197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488397_100488900_100488941_100489724_100489835_100491199
transcript_62216.nic	chrX	+	2624	12	NIC	ENSMUSG00000031311.18	novel	2562	12	NA	NA	-35	0	combination_of_known_junctions	FALSE	canonical	3	146	junction_9	1051.63693731909	677	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTCTGTGCTGTTTTTTTT	NA	False	NA	20	True	ATTAAA	-21	NA	100473125	100492197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_100473369_100474098_100474159_100480814_100480984_100483092_100483287_100485121_100485424_100486535_100486632_100486900_100487098_100487882_100487968_100488293_100488424_100488900_100488941_100489724_100489835_100491199
transcript_62232.known	chrX	+	1364	5	FSM	ENSMUSG00000031311.18	ENSMUST00000126019.2	1364	5	0	0	0	0	multi-exon	FALSE	canonical	3	397	junction_1	1520.69496859166	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAGCAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	100473340	100486037	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_100473369_100474101_100474159_100480814_100480984_100483092_100483287_100485121
transcript_62234.known	chrX	+	345	4	FSM	ENSMUSG00000031311.18	ENSMUST00000148312.2	345	4	0	0	0	0	multi-exon	FALSE	canonical	3	146	junction_1	1706.81893851952	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAAATAAACGCCGCCGAT	NA	False	NA	NA	False	NA	NA	NA	100488338	100491309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_100488424_100488900_100488941_100489724_100489835_100491199
transcript_62236.known	chrX	+	1317	5	FSM	ENSMUSG00000034160.14	ENSMUST00000155713.8	1317	5	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	106.6123233965	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	TTAAAAAAAAAAAAAAAGTC	NA	False	NA	NA	False	NA	NA	NA	100683667	100696483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_100683717_100683823_100683929_100686581_100686763_100687552_100687797_100695745
transcript_62237.nic	chrX	+	1375	5	ISM	ENSMUSG00000034160.14	ENSMUST00000119299.8	3840	23	-69	30046	-69	0	5prime_fragment	FALSE	canonical	3	98	junction_1	113.781589020368	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGAAGGACAAAGCTGGT	NA	False	NA	NA	False	TTTAAA	-13	NA	100683596	100696500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_100683717_100683823_100683929_100686611_100686763_100687552_100687797_100695745
transcript_62238.known	chrX	+	3087	4	FSM	ENSMUSG00000034160.14	ENSMUST00000150161.8	3087	4	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_1	65.0743164901996	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTCTCTATGGGCCTG	NA	False	NA	NA	False	GATAAA	-44	NA	100683713	100698192	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_100683929_100686581_100686763_100687552_100687797_100695745
transcript_62239.known	chrX	+	1333	4	FSM	ENSMUSG00000034160.14	ENSMUST00000155792.2	1333	4	0	0	0	0	multi-exon	FALSE	canonical	3	162	junction_1	90.0530707724926	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCAGAAGGACAAAGCTGGT	NA	False	NA	NA	False	TTTAAA	-13	NA	100683745	100696500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_100683929_100686611_100686763_100687552_100687797_100695745
transcript_62240.known	chrX	+	3840	23	FSM	ENSMUSG00000034160.14	ENSMUST00000119299.8	3840	23	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	138.801667470395	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGACTTAAGACTTTTCAGC	NA	False	NA	NA	False	NA	NA	NA	100683665	100726546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_100683717_100683823_100683929_100686611_100686763_100687552_100687797_100695745_100695815_100699229_100699347_100704857_100704938_100706964_100707161_100707448_100707590_100708249_100708351_100710883_100711038_100711121_100711224_100711585_100711766_100713362_100713522_100713636_100713727_100716053_100716180_100716648_100716820_100716928_100717046_100717147_100717319_100719754_100719908_100722314_100722568_100722829_100722954_100725761
transcript_62241.known	chrX	-	1190	7	FSM	ENSMUSG00000045010.15	ENSMUST00000124577.8	1190	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	111.484926734016	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACGCCCGGCTCTGAGTCC	NA	False	NA	NA	False	NA	NA	NA	100836869	100833658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_100834130_100834212_100834255_100834440_100834505_100834844_100834891_100835166_100835250_100835786_100835944_100836542
transcript_62243.known	chrX	-	1991	6	FSM	ENSMUSG00000045010.15	ENSMUST00000147742.9	1991	6	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_5	73.271003814606	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838029	100833953	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_100834130_100834212_100834255_100834844_100834891_100835166_100835250_100835786_100835944_100836542
transcript_62244.nic	chrX	-	2275	6	NIC	ENSMUSG00000045010.15	novel	1991	6	NA	NA	-34	0	intron_retention	FALSE	canonical	3	117	junction_2	83.8035798758024	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838063	100833953	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_100834130_100834212_100834505_100834844_100834891_100835166_100835250_100835786_100835944_100836542
transcript_62246.nic	chrX	-	2615	5	NIC	ENSMUSG00000045010.15	novel	1991	6	NA	NA	-34	0	intron_retention	FALSE	canonical	3	142	junction_4	69.9052930757035	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838063	100833953	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_100834130_100834212_100834891_100835166_100835250_100835786_100835944_100836542
transcript_62249.nnic	chrX	+	845	8	NNC	ENSMUSG00000046774.18	novel	1050	9	NA	NA	-44	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	114.068901483771	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838217	100842248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_100838373_100839575_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841772_100841947_100841990_100842072
transcript_62250.known	chrX	+	1991	7	FSM	ENSMUSG00000046774.18	ENSMUST00000163399.8	1991	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_5	79.7050116924205	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACAGCTGTACTTTTGCAA	NA	False	NA	NA	False	NA	NA	NA	100838261	100842244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841763_100841947_100841990_100842072
transcript_62251.nic	chrX	+	2058	7	NIC	ENSMUSG00000046774.18	novel	1050	9	NA	NA	-54	0	intron_retention	FALSE	canonical	3	47	junction_5	86.9329243344162	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838207	100842248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841772_100841947_100841990_100842072
transcript_62252.nnic	chrX	+	1240	7	NIC	ENSMUSG00000046774.18	novel	1050	9	NA	NA	-47	0	intron_retention	FALSE	canonical	3	15	junction_1	98.5675177508065	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838214	100842248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_100838373_100839359_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841990_100842072
transcript_62255.nnic	chrX	+	1746	7	NNC	ENSMUSG00000046774.18	novel	1991	7	NA	NA	-43	0	intron_retention	FALSE	non_canonical	1	6	junction_1	110.910499452887	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838218	100842248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_100839485_100840365_100840444_100840965_100841049_100841321_100841368_100841707_100841763_100841947_100841990_100842072
transcript_62256.nic	chrX	+	2234	6	NIC	ENSMUSG00000046774.18	novel	1940	6	NA	NA	-54	0	intron_retention	FALSE	canonical	3	236	junction_4	22.2656686403081	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838207	100842248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841707_100841990_100842072
transcript_62257.known	chrX	+	1940	6	FSM	ENSMUSG00000046774.18	ENSMUST00000151231.10	1940	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	112.716280989039	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCTGTACTTTTGCAACTGT	NA	False	NA	NA	False	NA	NA	NA	100838261	100842248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_100839695_100840283_100840444_100840965_100841049_100841321_100841368_100841947_100841990_100842072
transcript_62265.known	chrX	-	2017	5	FSM	ENSMUSG00000118638.2	ENSMUST00000239206.2	2017	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.06155281280883	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTTTCCCTGTGTTTTGTT	333	False	NA	NA	False	NA	NA	NA	100865583	100861789	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_100862058_100862488_100862535_100862797_100862881_100863345_100863533_100864150
transcript_62267.known	chrX	+	489	4	FSM	ENSMUSG00000079480.4	ENSMUST00000113627.4	489	4	0	0	0	0	multi-exon	FALSE	canonical	3	1046	junction_3	75.7495874576225	366	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAGTGTTTTCTATTTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	101163052	101171275	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_101163171_101165273_101165348_101170622_101170743_101171098
transcript_62269.known	chrX	-	5302	2	FSM	ENSMUSG00000051220.3	ENSMUST00000056904.3	5302	2	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_1	0	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAAGATTCCGGTTTGTTGTG	NA	False	NA	NA	False	NA	NA	NA	101200697	101185321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_101190440_101200513
transcript_6227.known	chr11	-	1546	9	FSM	ENSMUSG00000020457.14	ENSMUST00000020741.12	1546	9	0	0	0	0	multi-exon	FALSE	canonical	3	1733	junction_5	106.427719016241	1794	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCATGTGAGGTTTGCTGTG	NA	False	NA	-1	True	TATAAA	-34	NA	3216393	3199906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_3200366_3202159_3202283_3202643_3202812_3204511_3204643_3206542_3206713_3209305_3209376_3212488_3212665_3214766_3214891_3216268
transcript_62274.known	chrX	-	975	7	FSM	ENSMUSG00000031320.10	ENSMUST00000033683.8	975	7	0	0	0	0	multi-exon	FALSE	canonical	3	11043	junction_6	2028.67992108716	35712	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTTGGTTTGCTGTTGCTTT	NA	False	NA	NA	False	ATTAAA	-18	NA	101233000	101228546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_101228738_101229108_101229267_101230001_101230174_101230960_101231059_101231427_101231609_101231899_101231978_101232903
transcript_62275.known	chrX	-	576	3	FSM	ENSMUSG00000051159.17	ENSMUST00000130589.2	576	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	102	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTCAACCTGCATCCTA	NA	False	NA	NA	False	NA	NA	NA	101294381	101291426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_101291615_101292168_101292294_101294118
transcript_62276.known	chrX	-	607	3	FSM	ENSMUSG00000051159.17	ENSMUST00000134887.8	607	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	97.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCAGGCCTACCAGGGGAG	NA	False	NA	NA	False	NA	NA	NA	101294552	101291319	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_101291615_101292168_101292294_101294365
transcript_62277.known	chrX	-	1090	3	FSM	ENSMUSG00000051159.17	ENSMUST00000101336.10	1090	3	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_2	78.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAAAAGTTAACTTGCAAAGA	NA	False	NA	-23	True	AAAAAG	-20	NA	101295458	101291009	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_101291615_101292168_101292294_101295098
transcript_62278.known	chrX	-	901	3	FSM	ENSMUSG00000051159.17	ENSMUST00000050551.10	901	3	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_2	38	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGCCTGGGTGTGTTCTT	NA	False	NA	0	True	AATAAA	-20	NA	101295787	101290986	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_101291615_101292168_101292294_101295639
transcript_62279.known	chrX	-	1936	11	FSM	ENSMUSG00000067567.13	ENSMUST00000087916.11	1936	11	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	12.0747670784989	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTCGTCCCACCGCTCTGT	NA	False	NA	-1	True	AATAAA	-15	NA	101548965	101328244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_101328775_101351244_101351351_101446190_101446286_101449142_101449316_101471720_101471830_101472369_101472448_101476090_101476204_101541736_101541879_101543427_101543559_101548004_101548058_101548559
transcript_62282.nnic	chrX	-	1576	10	NNC	ENSMUSG00000067567.13	novel	686	7	NA	NA	-51	47575	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	19.2700112437262	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCTGAGAATACAATTACTAG	NA	False	NA	NA	False	AATAAA	-14	NA	101549016	101401677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_101401903_101446190_101446286_101449142_101449316_101471720_101471830_101472369_101472448_101476090_101476204_101541736_101541879_101543427_101543559_101548004_101548058_101548559
transcript_62285.known	chrX	-	6115	33	FSM	ENSMUSG00000034055.17	ENSMUST00000052012.14	6115	33	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_24	10.1886502418132	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTCTGGTGTTACTGCACA	NA	False	NA	NA	False	AATAAA	-16	NA	101687852	101557580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_101559822_101560382_101560584_101561048_101561103_101564359_101564531_101571672_101571724_101575682_101575722_101576008_101576125_101580789_101580892_101584717_101584848_101584977_101585057_101588279_101588360_101588913_101589071_101598489_101598630_101599131_101599224_101600701_101600879_101603170_101603341_101612895_101612975_101617073_101617219_101618570_101618681_101629682_101629818_101636232_101636312_101641007_101641116_101641791_101641888_101652647_101652771_101653757_101653812_101659516_101659664_101660922_101661022_101664943_101665025_101669193_101669277_101680148_101680318_101682686_101682735_101685826_101685986_101687452
transcript_62287.known	chrX	-	337	3	FSM	ENSMUSG00000081443.3	ENSMUST00000122154.3	337	3	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_2	7	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATTTTCTTTGACTGTGTG	3627	False	NA	NA	False	AATAAA	-16	NA	101730578	101729897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_101730044_101730198_101730354_101730542
transcript_62288.known	chrX	-	420	3	FSM	ENSMUSG00000079479.3	ENSMUST00000113610.3	420	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	3	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTTGACTTCGTGAAAATT	NA	False	NA	NA	False	AATAAA	-22	NA	101751241	101750495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_101750648_101750793_101750958_101751137
transcript_62289.known	chrX	+	1200	7	FSM	ENSMUSG00000073027.11	ENSMUST00000101324.9	1200	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	1.5723301886761	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCATTTGTCCTGTGATT	3864	False	NA	NA	False	NA	NA	NA	101751470	101758815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_101751533_101754965_101755124_101755540_101755600_101755900_101756038_101756834_101756896_101757072_101757251_101758270
transcript_62292.known	chrX	+	1611	9	FSM	ENSMUSG00000067562.12	ENSMUST00000118218.8	1611	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	65.1257197656963	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846568	101853548	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_101846761_101846861_101847052_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
transcript_62295.nnic	chrX	+	1478	8	NNC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	3	57	junction_1	44.698993277254	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846539	101853548	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_101846789_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
transcript_62296.nnic	chrX	+	1421	8	NIC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	0	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_1	52.0670682085782	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846568	101853548	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_101846761_101848305_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
transcript_62297.nnic	chrX	+	1501	8	NNC	ENSMUSG00000067562.12	novel	1611	9	NA	NA	1	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_1	56.4623768539724	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101846569	101853548	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_101846789_101848252_101848480_101848622_101848775_101849096_101849156_101849476_101849614_101850489_101850554_101850740_101850871_101853035
transcript_62301.known	chrX	-	1611	9	FSM	ENSMUSG00000067561.13	ENSMUST00000120314.8	1611	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	64.8072864344743	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101898222	101891244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101897739_101897930_101898030
transcript_62303.nnic	chrX	-	1688	9	NNC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	64.8072864344743	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101898246	101891244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896539_101897739_101897930_101898030
transcript_62304.nnic	chrX	-	1476	8	NNC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	-27	0	at_least_one_novel_splicesite	FALSE	canonical	3	58	junction_7	44.1518714790442	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101898249	101891244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101898002
transcript_62305.nnic	chrX	-	1443	8	NIC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_7	51.90218429598	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101898244	101891244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896486_101898030
transcript_62306.nnic	chrX	-	1502	8	NNC	ENSMUSG00000067561.13	novel	1611	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	56.3197866415254	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACACTGCCCAGGTCTTCA	NA	False	NA	NA	False	AATAAA	-12	NA	101898222	101891244	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_101891758_101893920_101894051_101894237_101894302_101895177_101895315_101895635_101895695_101896016_101896169_101896311_101896539_101898002
transcript_62309.known	chrX	-	685	4	FSM	ENSMUSG00000031325.16	ENSMUST00000127012.9	685	4	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTATCTAAGAAGCTACTAAA	NA	False	NA	NA	False	GATAAA	-14	NA	102355388	102273633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_102273781_102276407_102276548_102277627_102277876_102355238
transcript_62310.nic	chrX	-	2015	3	ISM	ENSMUSG00000031325.16	ENSMUST00000127012.9	685	4	-57	1354	-57	0	5prime_fragment	FALSE	canonical	3	19	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAATTATTGAAAGTATCAGA	NA	False	NA	NA	False	ATTAAA	-13	NA	102355445	102274987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_102276548_102277627_102277876_102355238
transcript_62311.nnic	chrX	-	3001	2	Fusion	ENSMUSG00000031325.16_ENSMUSG00000082229.2	novel	685	4	NA	NA	-141	12	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTTTTAAAAAAGAACTTTT	NA	False	NA	NA	False	AATAAA	-27	NA	102355529	102227769	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Fusion_chrX_-_102230480_102355238
transcript_62312.known	chrX	-	2465	1	FSM	ENSMUSG00000082229.2	ENSMUST00000121720.2	2465	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CATGGTGTTAAATGTTTTAA	NA	False	NA	NA	False	AATAAA	-15	NA	102230246	102227781	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_102227800_102230200
transcript_62313.known	chrX	+	1963	3	FSM	ENSMUSG00000031326.3	ENSMUST00000033689.3	1963	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAACTTCCA	NA	False	NA	NA	False	NA	NA	NA	102365003	102374198	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_102365662_102371614_102371761_102373039
transcript_62314.known	chrX	+	7375	6	FSM	ENSMUSG00000031327.11	ENSMUST00000116547.3	7375	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	5.41848687365763	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTTGAACCGTGTGGCTT	NA	False	NA	8	True	AATAAA	-18	NA	102400081	102439698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_102400496_102409819_102409875_102417204_102417361_102430860_102430918_102431592_102431653_102433065
transcript_62316.known	chrX	+	812	7	FSM	ENSMUSG00000031329.5	ENSMUST00000033691.5	812	7	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_2	4.2687494916219	29	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAACCTTTGCGTTTCTGTGT	NA	False	NA	1	True	AATAAA	-10	NA	102458072	102468186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_102458253_102459640_102459677_102460356_102460394_102461814_102461897_102464105_102464207_102465593_102465653_102467869
transcript_62320.known	chrX	-	7439	5	FSM	ENSMUSG00000056537.12	ENSMUST00000121153.8	7439	5	0	0	0	0	multi-exon	FALSE	canonical	3	84	junction_4	53.7261575026541	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGCTTTTTCATCCTT	2373	False	NA	-1	True	AATAAA	-16	NA	103024890	103000768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_103007650_103008856_103008941_103010096_103010287_103022878_103022941_103024668
transcript_62321.known	chrX	-	7429	5	FSM	ENSMUSG00000056537.12	ENSMUST00000070705.6	7429	5	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_4	35.6300435026397	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTGCTTTTTCATCCTT	2373	False	NA	-1	True	AATAAA	-16	NA	103024890	103000768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_103007650_103008856_103008941_103010096_103010287_103022878_103022941_103024678
transcript_62325.known	chrX	-	5667	16	FSM	ENSMUSG00000031333.8	ENSMUST00000033695.6	5667	16	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_7	23.4516997725585	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGTGTCTGGTGGAAATCA	9861	False	NA	-2	True	AATAAA	-24	NA	103457452	103324262	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_103327865_103334728_103334837_103338073_103338178_103339436_103339609_103343374_103343505_103343655_103343820_103344376_103344535_103345399_103345575_103346557_103346646_103346734_103346824_103347737_103348007_103348875_103349009_103366939_103367060_103386099_103386187_103388530_103388609_103457262
transcript_62329.known	chrX	+	2304	7	FSM	ENSMUSG00000073016.4	ENSMUST00000087867.6	2304	7	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	1.67497927018682	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGGTTTGTATGTGTTCAT	NA	False	NA	NA	False	ATTAAA	-32	NA	103526423	103551096	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_103526956_103539341_103539385_103541880_103541951_103543009_103543073_103545350_103545513_103547934_103548034_103549761
transcript_62330.nnic	chrX	-	1805	13	NNC	ENSMUSG00000033906.6	novel	5509	12	NA	NA	20	-3738	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_3	36.636635428974	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGCTTGTATTTGATCATG	NA	False	NA	0	True	AATATA	-41	NA	103714650	103584312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_103584775_103588433_103588511_103592686_103592741_103604290_103604395_103607426_103607554_103609307_103609441_103615259_103615381_103616110_103616144_103617774_103617845_103631906_103632028_103641697_103641793_103676189_103676217_103714269
transcript_62334.known	chrX	-	5509	12	FSM	ENSMUSG00000033906.6	ENSMUST00000042070.6	5509	12	0	0	0	0	multi-exon	TRUE	canonical	3	93	junction_8	6.78841989185253	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTGTGTCTTTTCTATA	NA	False	NA	NA	False	ATTAAA	-15	NA	103714670	103580574	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_103584775_103588433_103588511_103604290_103604395_103607426_103607554_103609307_103609441_103615259_103615381_103616110_103616144_103617774_103617845_103631906_103632028_103641697_103641793_103676189_103676217_103714269
transcript_62340.known	chrX	-	2316	1	FSM	ENSMUSG00000031224.7	ENSMUST00000033575.7	2316	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCATGCTTATGTGATCAT	NA	False	NA	NA	False	AATAAA	-17	NA	103900873	103898557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_103898600_103900900
transcript_62343.known	chrX	-	631	7	FSM	ENSMUSG00000087174.8	ENSMUST00000127409.8	631	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	39.9151878640477	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TATGGCAAAATAAACCTCCA	NA	False	NA	NA	False	NA	NA	NA	104113641	104087606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_104087718_104091514_104091617_104110364_104110484_104112069_104112235_104112719_104112753_104113216_104113282_104113605
transcript_62344.known	chrX	-	3287	6	FSM	ENSMUSG00000087174.8	ENSMUST00000140954.8	3287	6	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	25.9183332797462	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAACAAGAGAAAGAAGAC	NA	False	NA	NA	False	NA	NA	NA	104113730	104085006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_104087718_104091514_104091617_104110364_104110484_104112069_104112235_104113216_104113282_104113605
transcript_62345.known	chrX	-	531	6	FSM	ENSMUSG00000087174.8	ENSMUST00000146227.8	531	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_5	40.4899987651272	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CAAGCAGTCTACTACTGAAC	NA	False	NA	NA	False	NA	NA	NA	104113714	104087681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_104087718_104091514_104091617_104110364_104110484_104112069_104112235_104113216_104113282_104113670
transcript_62346.known	chrX	-	709	6	FSM	ENSMUSG00000087174.8	ENSMUST00000144366.8	709	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_3	33.8904116233486	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTGTGGATTTACATGTA	NA	False	NA	-3	True	AATAAA	-17	NA	104113661	104087408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_104087718_104091514_104091617_104110364_104110484_104112176_104112235_104113216_104113282_104113605
transcript_62348.nnic	chrX	-	807	5	NIC	ENSMUSG00000087174.8	novel	3287	6	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	2	13	junction_4	26.7803566070357	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTGTGGATTTACATGTA	NA	False	NA	-3	True	AATAAA	-17	NA	104113717	104087408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_104087718_104091514_104091617_104110364_104110484_104112069_104112235_104113605
transcript_62351.known	chrX	-	3732	5	FSM	ENSMUSG00000087174.8	ENSMUST00000138460.8	3732	5	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	38.5940409908058	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAATTGAAAATAAAGACA	NA	False	NA	NA	False	NA	NA	NA	104113730	104084459	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_104087718_104110364_104110484_104112069_104112235_104113216_104113282_104113605
transcript_62352.nic	chrX	-	686	5	NIC	ENSMUSG00000087174.8	novel	709	6	NA	NA	-10	0	combination_of_known_junctions	FALSE	canonical	3	29	junction_1	44.3790491110389	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAGTTGTGGATTTACATGTA	NA	False	NA	-3	True	AATAAA	-17	NA	104113740	104087408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_104087718_104110364_104110484_104112176_104112235_104113216_104113282_104113605
transcript_62355.known	chrX	+	2638	6	FSM	ENSMUSG00000031226.14	ENSMUST00000033577.11	2638	6	0	0	0	0	multi-exon	FALSE	canonical	3	1180	junction_1	116.642359372571	262	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAAAATAGCTCTTTCCAG	NA	False	NA	NA	False	NA	NA	NA	104123361	104128792	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104126621
transcript_62356.known	chrX	+	1239	6	FSM	ENSMUSG00000031226.14	ENSMUST00000119477.2	1239	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	564.946723151838	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGGCCAGAGTTCCTTTT	NA	False	NA	5	True	AATAAA	-20	NA	104123366	104160696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_104123450_104123559_104123626_104124976_104125037_104125543_104125685_104126299_104126412_104159919
transcript_62363.nic	chrX	-	1693	10	NIC	ENSMUSG00000031229.17	novel	1920	11	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_9	84.7217668475922	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAGAAAAAAATACCAAA	NA	False	NA	NA	False	NA	NA	NA	104972960	104920565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104955075_104955261_104972705
transcript_62364.nic	chrX	-	2378	9	NIC	ENSMUSG00000031229.17	novel	1920	11	NA	NA	-27	556	combination_of_known_junctions	FALSE	canonical	3	34	junction_8	72.3134453265781	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GGAAACGGAAAAATTCTACT	NA	False	NA	18	True	NA	NA	NA	104972210	104919557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972093
transcript_62366.nic	chrX	-	1370	9	NIC	ENSMUSG00000031229.17	novel	1920	11	NA	NA	-27	0	combination_of_known_junctions	FALSE	canonical	3	34	junction_8	72.3134453265781	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAGAAAAAAATACCAAA	NA	False	NA	NA	False	NA	NA	NA	104972210	104920565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972093
transcript_62367.nic	chrX	-	1698	9	NIC	ENSMUSG00000031229.17	novel	1920	11	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	69	junction_8	63.7397050510904	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAGAAAAAAATACCAAA	NA	False	NA	NA	False	NA	NA	NA	104973009	104920565	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972564
transcript_62368.known	chrX	-	10275	35	FSM	ENSMUSG00000031229.17	ENSMUST00000113573.8	10275	35	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_34	46.470253163349	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTTGTGCTCTTTATTGC	NA	False	NA	-2	True	ATTAAA	-19	NA	104973009	104841220	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_104844063_104844953_104845083_104845586_104845683_104846295_104846422_104847389_104847540_104861637_104861833_104862948_104863127_104864381_104864491_104867314_104867422_104869706_104869861_104874453_104874627_104874800_104874881_104876052_104876184_104879915_104880034_104881844_104882021_104883446_104883585_104889102_104889281_104889400_104889548_104890291_104890402_104891187_104891330_104894642_104894877_104895570_104895674_104896889_104896984_104899463_104899638_104900063_104900225_104911456_104911530_104918165_104921180_104921972_104922041_104923514_104923625_104927912_104928027_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972705
transcript_6237.known	chr11	-	831	5	FSM	ENSMUSG00000023764.19	ENSMUST00000118627.2	831	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	37.5724300518346	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGACACTCTGCACTTTGTT	8018	False	NA	NA	False	NA	NA	NA	3143424	3135567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_3135975_3136064_3136137_3137239_3137411_3138940_3139057_3143359
transcript_62373.known	chrX	-	3233	8	FSM	ENSMUSG00000031229.17	ENSMUST00000128968.8	3233	8	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	94.231802768817	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAGAAGGAAGAATTATCT	NA	False	NA	NA	False	GATAAA	-8	NA	104972972	104918735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_104921180_104921972_104922041_104923514_104923622_104931320_104931446_104932598_104932652_104934522_104934579_104943486_104943600_104972705
transcript_62377.known	chrX	-	4524	10	FSM	ENSMUSG00000031232.18	ENSMUST00000238718.2	4524	10	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_8	15.5404688745065	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACATGGTTTTTTTATTCT	NA	False	NA	NA	False	AATAAA	-16	NA	105055505	105011689	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_105015086_105017790_105017882_105023011_105023087_105027315_105027380_105027971_105028062_105032576_105032718_105032995_105033137_105036003_105036122_105040427_105040598_105055267
transcript_62387.known	chrX	+	1001	3	FSM	ENSMUSG00000031231.5	ENSMUST00000033582.5	1001	3	0	0	0	0	multi-exon	FALSE	canonical	3	7724	junction_1	851.5	2161	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCTGGGTTTAAAGTGATAA	NA	False	NA	NA	False	AATAAA	-14	NA	105059305	105066056	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_105059477_105063184_105063310_105065351
transcript_62388.known	chrX	+	1825	11	FSM	ENSMUSG00000062070.13	ENSMUST00000081593.13	1825	11	0	0	0	0	multi-exon	FALSE	canonical	3	3907	junction_10	353.61602056468	6341	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTTTCCTGTCATACTTTG	NA	False	NA	NA	False	AATAAA	-20	NA	105230705	105247305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_105230922_105235612_105235664_105237961_105238118_105238237_105238383_105240448_105240553_105241447_105241568_105243252_105243368_105243762_105243943_105246044_105246223_105246442_105246542_105246844
transcript_62389.known	chrX	-	1744	6	FSM	ENSMUSG00000031239.6	ENSMUST00000033591.6	1744	6	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	8.06473806146238	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTCCATTCCCATCTCTAC	NA	False	NA	NA	False	TATAAA	-18	NA	106446982	106440704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_106441586_106441701_106441853_106442376_106442488_106442701_106442900_106443172_106443305_106446711
transcript_6239.known	chr11	+	2573	6	FSM	ENSMUSG00000034614.15	ENSMUST00000045153.11	2573	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	4.60434577328853	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTTTTGTGGTGATGAGG	NA	False	NA	NA	False	TATAAA	-25	NA	3280400	3292971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_3281005_3281914_3282032_3282108_3282229_3283208_3283413_3283504_3283584_3291522
transcript_62390.known	chrX	-	5842	8	FSM	ENSMUSG00000031242.8	ENSMUST00000120722.2	5842	8	0	0	0	0	multi-exon	TRUE	canonical	3	41	junction_6	7.21958786771044	24	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGCTGTACTCTGTAACTA	NA	False	NA	NA	False	AATAAA	-25	NA	106859940	106826356	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_106831460_106831871_106831945_106834341_106834386_106836504_106836613_106836698_106836768_106837113_106837261_106851397_106851496_106859740
transcript_62399.known	chrX	+	546	3	FSM	ENSMUSG00000086629.9	ENSMUST00000131640.8	546	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_2	2.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACCTTGTCTCCAATCTCTAT	NA	False	NA	NA	False	AATAAA	-12	NA	107878262	107930289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_107878380_107879871_107879962_107929950
transcript_62402.nic	chrX	+	969	3	NIC	ENSMUSG00000086629.9	novel	546	3	NA	NA	0	1	combination_of_known_junctions	TRUE	canonical	3	8	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTGTTGTAACAGACAATGA	NA	False	NA	NA	False	AATAAA	-17	NA	107878284	107930503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_107878611_107879871_107879962_107929950
transcript_62403.known	chrX	-	1934	6	FSM	ENSMUSG00000031245.9	ENSMUST00000033597.9	1934	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	41.3424721079908	191	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATGGTTTGCAATATTTCA	NA	False	NA	1	True	AATAAA	-19	NA	108057010	108048139	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_108049678_108051767_108051903_108054159_108054214_108054462_108054493_108055027_108055052_108056857
transcript_62404.known	chrX	+	2882	4	FSM	ENSMUSG00000031246.15	ENSMUST00000033598.9	2882	4	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	2.86744175568088	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTTGATTACTTTTAATTT	NA	False	NA	NA	False	AATAAA	-18	NA	108138970	108206077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_108139244_108193520_108193707_108197911_108197993_108203735
transcript_62406.nic	chrX	-	4299	24	NIC	ENSMUSG00000025665.17	novel	4170	24	NA	NA	-73	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_23	71.6464486948656	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTTAGTCTTGGTGTAG	NA	False	NA	-7	True	ATTAAA	-30	NA	110373225	110297889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309967_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546_110372799_110372967
transcript_62407.nic	chrX	-	4159	24	NIC	ENSMUSG00000025665.17	novel	4170	24	NA	NA	82	0	combination_of_known_junctions	FALSE	canonical	3	110	junction_23	62.1628144548264	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTTAGTCTTGGTGTAG	NA	False	NA	-7	True	ATTAAA	-30	NA	110373070	110297889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546_110372799_110372967
transcript_62408.known	chrX	-	4135	23	FSM	ENSMUSG00000025665.17	ENSMUST00000113428.9	4135	23	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_4	54.455987232393	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTTAGTCTTGGTGTAG	NA	False	NA	-7	True	ATTAAA	-30	NA	110372892	110297889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309967_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546
transcript_62409.known	chrX	-	4151	23	FSM	ENSMUSG00000025665.17	ENSMUST00000096348.10	4151	23	0	0	0	0	multi-exon	FALSE	canonical	3	237	junction_4	39.3304500040447	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATTTAGTCTTGGTGTAGT	NA	False	NA	-6	True	ATTAAA	-31	NA	110372892	110297888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_110299609_110300783_110300916_110308277_110308396_110309904_110309982_110314374_110314537_110317152_110317312_110318341_110318432_110319029_110319153_110319546_110319678_110320231_110320335_110322401_110322461_110323234_110323324_110323534_110323606_110326794_110326938_110330608_110330647_110331366_110331474_110342310_110342391_110344013_110344095_110344883_110344966_110348849_110348967_110355927_110355988_110359988_110360052_110372546
transcript_6241.known	chr11	+	3173	5	FSM	ENSMUSG00000020453.18	ENSMUST00000093402.12	3173	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	189.564467925822	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	6470	False	NA	14	True	ATTAAA	-16	NA	3240456	3259083	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3256287_3256361_3257647
transcript_62414.known	chrX	+	1359	9	FSM	ENSMUSG00000025525.13	ENSMUST00000026599.10	1359	9	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_1	40.3205902734571	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACGAGCTTTGTTTATTTAT	NA	False	NA	7	True	AATAAA	-20	NA	111221030	111282452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_111221134_111243497_111243603_111255934_111256055_111259497_111259553_111260996_111261096_111263857_111263950_111273853_111273968_111274158_111274268_111281890
transcript_62418.known	chrX	+	2441	3	FSM	ENSMUSG00000025525.13	ENSMUST00000154378.2	2441	3	0	0	0	0	multi-exon	FALSE	canonical	3	334	junction_1	58.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TCAAAAAAAAAAAAAAGCCT	NA	False	NA	NA	False	NA	NA	NA	111221044	111258181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_111221134_111243497_111243603_111255934
transcript_62421.known	chrX	-	4868	15	FSM	ENSMUSG00000025531.15	ENSMUST00000026607.15	4868	15	0	0	0	0	multi-exon	TRUE	canonical	3	145	junction_7	16.3001189428489	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCCACTGTAATGGCTTATT	NA	False	NA	-9	True	AATAAA	-16	NA	112095214	111950289	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_111953333_111957032_111957194_111962758_111962858_111974543_111974641_111979275_111979340_111981613_111981719_111989834_111989913_112019872_112020099_112021625_112021747_112022245_112022363_112025712_112026128_112049032_112049158_112050410_112050484_112069200_112069268_112095137
transcript_62423.known	chrX	-	3386	13	FSM	ENSMUSG00000025531.15	ENSMUST00000135821.8	3386	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	51.3946468245694	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	TTAAAAATGAAAATAAACAT	NA	False	NA	NA	False	NA	NA	NA	112095206	111972227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_111974057_111974543_111974641_111979275_111979340_111981613_111981719_111989834_111989913_112019872_112020099_112021625_112021747_112022245_112022363_112025712_112026128_112049032_112049158_112050410_112050484_112069200_112069268_112095137
transcript_62424.nnic	chrX	+	922	3	NNC	ENSMUSG00000050435.3	novel	743	2	NA	NA	-7230	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_1	13	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCAGTCATTTTTTTTTT	NA	False	NA	1	True	AATAAA	-16	NA	113807478	113815638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_113807624_113814674_113814900_113815086
transcript_62425.known	chrX	+	743	2	FSM	ENSMUSG00000050435.3	ENSMUST00000059509.3	743	2	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATCAGTCATTTTTTTTTT	NA	False	NA	1	True	AATAAA	-16	NA	113814708	113815638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_113814900_113815086
transcript_62426.known	chrX	-	2837	1	FSM	ENSMUSG00000055733.7	ENSMUST00000079490.6	2837	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAAAGACTTACCATTTTCT	NA	False	NA	NA	False	AATAAA	-11	NA	121307098	121304261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_121304300_121307100
transcript_62427.known	chrX	-	399	1	FSM	ENSMUSG00000095499.2	ENSMUST00000179356.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTTGGCTCATTAAA	NA	False	NA	NA	False	AAGAAA	-4	NA	124765704	124765305	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_124765300_124765700
transcript_62429.known	chrX	-	1765	8	FSM	ENSMUSG00000067377.13	ENSMUST00000087557.12	1765	8	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_3	4.33777898591114	37	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATCGTTTTAATTTTTAGA	NA	False	NA	4	True	AATAAA	-42	NA	132799178	132791816	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_132792673_132793410_132793516_132795247_132795332_132795676_132795812_132796183_132796283_132797431_132797507_132797872_132798062_132798956
transcript_62432.known	chrX	+	4502	14	FSM	ENSMUSG00000031256.12	ENSMUST00000033609.9	4502	14	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_8	78.010695670871	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCACCCTACTTAGAAATCTT	NA	False	NA	12	True	AATAAA	-12	NA	132959945	132987568	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
transcript_62434.known	chrX	+	3661	14	FSM	ENSMUSG00000031256.12	ENSMUST00000113287.8	3661	14	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_8	147.051615138335	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACGTTCATGATCTGCCTTTA	NA	False	NA	NA	False	AATACA	-13	NA	132959935	132986795	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973962_132974027_132974874_132975060_132975261_132975555_132981075_132981187_132981939_132982066_132984980
transcript_62438.known	chrX	+	2717	11	FSM	ENSMUSG00000031256.12	ENSMUST00000113286.8	2717	11	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_8	82.5556781814552	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCAAGTTTTGCTTTTTAA	NA	False	NA	4	True	AATAAA	-19	NA	132959963	132976612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_132960172_132961392_132961472_132961693_132961864_132962442_132962580_132963116_132963237_132963346_132963485_132967009_132967134_132970593_132970657_132973884_132974027_132974874_132975060_132975261
transcript_62442.known	chrX	-	3119	13	FSM	ENSMUSG00000067369.13	ENSMUST00000087541.12	3119	13	0	0	0	0	multi-exon	TRUE	canonical	1	13	junction_4	11.7686022959398	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCACTATCTCTAGTCCATG	NA	False	NA	-5	True	AATAAA	-23	NA	133177731	133123843	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_133125455_133138891_133138992_133139215_133139336_133140827_133140930_133141103_133141319_133141725_133141821_133143763_133143911_133162325_133162397_133163533_133163634_133164475_133164611_133167009_133167065_133168079_133168311_133177594
transcript_62444.nic	chrX	-	918	5	ISM	ENSMUSG00000067369.13	ENSMUST00000145066.2	3237	12	-13	39387	-13	5	5prime_fragment	FALSE	canonical	3	42	junction_1	5.7227615711298	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGTCTCCGCATTGTCAT	NA	False	NA	-2	True	AGTAAA	-19	NA	133177689	133163231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_133163634_133164475_133164611_133167009_133167065_133168079_133168311_133177594
transcript_62446.nic	chrX	-	1756	4	NIC	ENSMUSG00000067369.13	novel	4099	12	NA	NA	-13	1	intron_retention	FALSE	canonical	3	48	junction_1	4.32049379893857	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGCTGTCTCCGCATTG	NA	False	NA	-6	True	AGTAAA	-15	NA	133177689	133163235	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_133164611_133167009_133167065_133168079_133168311_133177594
transcript_62447.known	chrX	+	1918	2	FSM	ENSMUSG00000033578.8	ENSMUST00000037687.8	1918	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGACATGGTGTGGATATGGA	NA	False	NA	6	True	AATAAA	-18	NA	133195973	133206718	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_133196379_133205205
transcript_6245.known	chr11	+	1853	4	FSM	ENSMUSG00000020453.18	ENSMUST00000101644.10	1853	4	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	164.248456782874	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	5180	False	NA	14	True	ATTAAA	-16	NA	3239166	3259083	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_3239348_3243279_3243344_3249033_3249206_3257647
transcript_62450.known	chrX	+	3227	23	FSM	ENSMUSG00000031262.13	ENSMUST00000081064.12	3227	23	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_9	42.2862392872416	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTATTTCCGAATTTTTTTT	NA	False	NA	6	True	AATAAA	-17	NA	133208832	133263388	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_133208978_133209314_133209383_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
transcript_62451.known	chrX	+	3085	22	FSM	ENSMUSG00000031262.13	ENSMUST00000101251.8	3085	22	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_1	51.4515821537341	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGGGGTATTTCCGAATTTTT	NA	False	NA	3	True	AATAAA	-14	NA	133208903	133263385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_133208978_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824_133243920_133247973_133248110_133249908_133250034_133251815_133251865_133251993_133252213_133261963_133262006_133262631
transcript_62456.nic	chrX	+	2171	17	ISM	ENSMUSG00000031262.13	ENSMUST00000081064.12	3227	23	52	19145	-19	-1659	5prime_fragment	FALSE	canonical	3	156	junction_9	46.4320319795505	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTAATGGTGGATTTTGTT	NA	False	NA	NA	False	NA	NA	NA	133208884	133244243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_133208978_133209314_133209383_133209475_133209597_133210889_133211122_133212739_133212878_133218359_133218479_133218773_133218882_133225509_133225559_133225839_133225887_133236833_133236924_133237259_133237389_133237958_133238121_133238351_133238473_133239502_133239595_133240582_133240701_133241096_133241162_133243824
transcript_62457.known	chrX	-	1933	13	FSM	ENSMUSG00000009596.10	ENSMUST00000009740.9	1933	13	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	4.16999866773227	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACGTCTCTAATTTCT	NA	False	NA	NA	False	NA	NA	NA	133377239	133360866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_133361415_133365048_133365109_133366370_133366484_133366656_133366891_133367272_133367375_133367824_133367898_133368646_133368689_133370864_133370921_133371128_133371259_133372140_133372275_133372779_133372859_133373654_133373717_133376939
transcript_62458.nic	chrX	-	1866	13	NIC	ENSMUSG00000009596.10	novel	1933	13	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	2	5	junction_8	5.1010619809343	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACGTCTCTAATTTCT	NA	False	NA	NA	False	NA	NA	NA	133377280	133360866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_133361415_133365048_133365109_133366370_133366484_133366656_133366891_133367272_133367375_133367824_133367898_133368646_133368689_133370864_133370921_133371236_133371259_133372140_133372275_133372779_133372859_133373654_133373717_133376939
transcript_62459.known	chrX	-	1421	2	FSM	ENSMUSG00000048007.5	ENSMUST00000054213.5	1421	2	0	0	0	0	multi-exon	FALSE	canonical	3	1175	junction_1	0	860	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTTGTGACGAAGAGGCTTT	NA	False	NA	-10	True	AATAAA	-16	NA	133442614	133438004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_133439017_133442205
transcript_6246.known	chr11	+	3118	4	FSM	ENSMUSG00000020453.18	ENSMUST00000057089.13	3118	4	0	0	0	0	multi-exon	FALSE	canonical	3	276	junction_3	67.6576348652209	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	6452	False	NA	14	True	ATTAAA	-16	NA	3240438	3259083	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_3241885_3243279_3243344_3249033_3249206_3257647
transcript_62462.known	chrX	-	2540	19	FSM	ENSMUSG00000031264.14	ENSMUST00000033617.13	2540	19	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	2.60104442460436	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATCTATTTTAATTTATTAC	NA	False	NA	NA	False	AATAAA	-16	NA	133483889	133443084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_133443557_133446230_133446389_133447460_133447580_133448310_133448376_133450163_133450381_133451055_133451228_133451950_133452026_133455147_133455276_133455437_133455518_133456297_133456353_133457086_133457150_133457536_133457725_133459435_133459504_133459946_133460076_133466345_133466428_133469653_133469723_133473957_133474057_133474665_133474837_133483759
transcript_62463.known	chrX	+	452	5	FSM	ENSMUSG00000079435.10	ENSMUST00000170828.2	452	5	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	5056.48450012457	5064	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTTTCTCCTGTTGAGTGG	NA	False	NA	81	True	ATTAAA	-22	NA	133486438	133488811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_133486469_133486826_133486933_133487260_133487328_133488199_133488323_133488685
transcript_62469.known	chrX	+	770	4	FSM	ENSMUSG00000079435.10	ENSMUST00000149857.3	770	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	5569.45900025806	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ACATTAAAAGCTTTCAGAAA	NA	False	NA	52	True	NA	NA	NA	133486449	133488782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_133486933_133487260_133487328_133488199_133488323_133488685
transcript_6247.nic	chr11	+	1865	4	ISM	ENSMUSG00000020453.18_ENSMUSG00000084941.2	ENSMUST00000123983.8	1249	5	1720	-941	311	0	3prime_fragment	FALSE	canonical	1	7	junction_2	115.014008808589	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCTGCCTGCTCCCCCGAG	9192	False	NA	14	True	ATTAAA	-16	NA	3243178	3259083	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_3243344_3244455_3244548_3249033_3249206_3257647
transcript_62472.known	chrX	-	3015	7	FSM	ENSMUSG00000031266.8	ENSMUST00000239113.2	3015	7	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_5	18.580904176062	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAATAAAAAATTTCAAATA	NA	False	NA	NA	False	NA	NA	NA	133501754	133488934	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_133490877_133491694_133491893_133492813_133492976_133494382_133494475_133495928_133496107_133497023_133497199_133501486
transcript_62473.known	chrX	+	2364	4	FSM	ENSMUSG00000045427.14	ENSMUST00000059297.6	2364	4	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_3	339.283886377699	219	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATCTTGCATAGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	133502034	133507803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_133502083_133503440_133503512_133503666_133503712_133505603
transcript_62474.known	chrX	+	2426	3	FSM	ENSMUSG00000045427.14	ENSMUST00000074950.11	2426	3	0	0	0	0	multi-exon	FALSE	canonical	3	597	junction_2	148.5	359	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAAAATCTTGCATAGTTTG	NA	False	NA	NA	False	AATAAA	-19	NA	133501927	133507803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_133502083_133503440_133503512_133505603
transcript_62475.known	chrX	+	2315	2	FSM	ENSMUSG00000045427.14	ENSMUST00000113203.2	2315	2	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTGCATAGTTTGATTTTC	NA	False	NA	NA	False	AATAAA	-25	NA	133501973	133507809	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_133502083_133505603
transcript_62476.known	chrX	+	7996	6	FSM	ENSMUSG00000049804.10	ENSMUST00000124226.3	7996	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2.44948974278318	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGAGATATTGTCTTCATT	NA	False	NA	NA	False	AATAAA	-24	NA	133587267	133597506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_133587387_133587896_133587975_133588765_133588856_133589198_133589282_133589568_133589654_133589965
transcript_6248.known	chr11	+	617	4	FSM	ENSMUSG00000034614.15	ENSMUST00000136474.2	617	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	6.0184900284226	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCACGGGCCAGGCTGGC	NA	False	NA	NA	False	NA	NA	NA	3282450	3291692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_3282615_3283208_3283413_3283504_3283584_3291522
transcript_62480.nnic	chrX	+	2333	6	NNC	ENSMUSG00000033460.15	novel	2303	6	NA	NA	-45	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	59.4151495832502	47	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618666	133622666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619742_133620375_133620475_133620823
transcript_62481.known	chrX	+	2413	6	FSM	ENSMUSG00000033460.15	ENSMUST00000113199.8	2413	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	37.1020215082683	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAAGCACTGTCTTTGT	NA	False	NA	NA	False	AATAAA	-20	NA	133618736	133622659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619858_133620375_133620475_133620782
transcript_62482.nnic	chrX	+	2449	6	NNC	ENSMUSG00000033460.15	novel	2413	6	NA	NA	-45	0	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	30.440762145518	39	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618666	133622666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_133618800_133619118_133619211_133619474_133619568_133619668_133619858_133620375_133620475_133620823
transcript_62484.known	chrX	+	2179	5	FSM	ENSMUSG00000033460.15	ENSMUST00000113197.2	2179	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	75.7310207246674	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618768	133622666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_133618800_133619118_133619211_133619668_133619742_133620375_133620475_133620782
transcript_62485.nnic	chrX	+	2170	5	NNC	ENSMUSG00000033460.15	novel	2179	5	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	73.5272058492637	37	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618736	133622666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_133618800_133619118_133619211_133619668_133619742_133620375_133620475_133620823
transcript_62488.known	chrX	+	2228	5	FSM	ENSMUSG00000033460.15	ENSMUST00000113201.8	2228	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	55.9955355363265	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAAGCACTGTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	133618711	133622657	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_133618800_133619474_133619568_133619668_133619742_133620375_133620475_133620782
transcript_62489.nnic	chrX	+	2228	5	NNC	ENSMUSG00000033460.15	novel	2303	6	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	54.8925085963467	68	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618679	133622666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_133618800_133619474_133619568_133619668_133619742_133620375_133620475_133620823
transcript_62490.nic	chrX	+	2385	5	NIC	ENSMUSG00000033460.15	novel	2413	6	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_1	34.5181111881864	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618679	133622666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_133618800_133619474_133619568_133619668_133619858_133620375_133620475_133620782
transcript_62491.nnic	chrX	+	2344	5	NNC	ENSMUSG00000033460.15	novel	2413	6	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_1	26.9664142963057	45	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618679	133622666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_133618800_133619474_133619568_133619668_133619858_133620375_133620475_133620823
transcript_62492.known	chrX	+	2085	4	FSM	ENSMUSG00000033460.15	ENSMUST00000113198.8	2085	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_3	26.0895892391327	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GGAAAAAAAGCACTGTCTTT	NA	False	NA	NA	False	AATAAA	-18	NA	133618761	133622657	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_133618800_133619668_133619742_133620375_133620475_133620782
transcript_62493.nnic	chrX	+	2166	4	NNC	ENSMUSG00000033460.15	novel	2179	5	NA	NA	-63	0	at_least_one_novel_splicesite	FALSE	canonical	3	112	junction_3	34.8839345385363	72	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618648	133622666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_133618800_133619668_133619742_133620375_133620475_133620823
transcript_62494.known	chrX	+	2253	4	FSM	ENSMUSG00000033460.15	ENSMUST00000051256.10	2253	4	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	53.7463177033243	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618718	133622666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_133618800_133619668_133619858_133620375_133620475_133620782
transcript_62495.nnic	chrX	+	2282	4	NNC	ENSMUSG00000033460.15	novel	2253	4	NA	NA	-63	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_2	53.074371299987	42	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCACTGTCTTTGTCCTTGGG	NA	False	NA	NA	False	AATAAA	-27	NA	133618648	133622666	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_133618800_133619668_133619858_133620375_133620475_133620823
transcript_62496.known	chrX	-	2024	4	FSM	ENSMUSG00000050394.15	ENSMUST00000052431.12	2024	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	2.05480466765633	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAGGGGCACTGGCCTCC	NA	False	NA	NA	False	AATAAA	-28	NA	133652166	133649211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_133650975_133651299_133651380_133651689_133651783_133652078
transcript_62497.known	chrX	+	3327	5	FSM	ENSMUSG00000049047.12	ENSMUST00000081834.10	3327	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	4.81534007106456	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AACAATAATAAAGGTTAACA	NA	False	NA	NA	False	NA	NA	NA	133657343	133662174	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_133657480_133658012_133658092_133658480_133658543_133658825_133658896_133659194
transcript_62499.known	chrX	+	2024	5	FSM	ENSMUSG00000049047.12	ENSMUST00000086880.11	2024	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	7.24568837309472	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAACTAGTCTGTCTTTTGG	NA	False	NA	NA	False	AATAAA	-41	NA	133657355	133660855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_133657480_133657984_133658092_133658480_133658543_133658825_133658896_133659194
transcript_6250.known	chr11	+	844	3	FSM	ENSMUSG00000020453.18	ENSMUST00000144396.8	844	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	24	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTCTTAATTGGGCGGGA	5215	False	NA	NA	False	GGGGCT	-11	NA	3239201	3245089	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_3239348_3243279_3243344_3244455
transcript_62500.known	chrX	-	3666	6	FSM	ENSMUSG00000033436.14	ENSMUST00000113193.9	3666	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_5	6.60302960768767	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGAAGTTGTTCTGGTGCTT	NA	False	NA	-3	True	AATAAA	-19	NA	133709970	133704895	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_133707763_133708010_133708077_133708202_133708263_133708369_133708475_133708983_133709249_133709667
transcript_62503.known	chrX	-	2375	22	FSM	ENSMUSG00000009941.11	ENSMUST00000113189.8	2375	22	0	0	0	0	multi-exon	TRUE	canonical	3	15	junction_3	7.21770310384392	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTATGTCTTGAAGTGCT	NA	False	NA	-2	True	AATAAA	-18	NA	133865503	133845276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_133845538_133845640_133845702_133850435_133850616_133851095_133851169_133851717_133851761_133851850_133851967_133852078_133852138_133852238_133852347_133852497_133852554_133852635_133852891_133853240_133853278_133855976_133856087_133856257_133856366_133856471_133856561_133856713_133856784_133856913_133856995_133857111_133857217_133857340_133857425_133857798_133857953_133858216_133858320_133862672_133862768_133865376
transcript_62504.known	chrX	-	2393	22	FSM	ENSMUSG00000009941.11	ENSMUST00000010085.4	2393	22	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_3	6.66632652193486	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTATGTCTTGAAGTGCT	NA	False	NA	-2	True	AATAAA	-18	NA	133865503	133845276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_133845538_133845640_133845702_133850435_133850634_133851095_133851169_133851717_133851761_133851850_133851967_133852078_133852138_133852238_133852347_133852497_133852554_133852635_133852891_133853240_133853278_133855976_133856087_133856257_133856366_133856471_133856561_133856713_133856784_133856913_133856995_133857111_133857217_133857340_133857425_133857798_133857953_133858216_133858320_133862672_133862768_133865376
transcript_62507.known	chrX	-	3501	7	FSM	ENSMUSG00000052676.17	ENSMUST00000064659.6	3501	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	2.08166599946613	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAATATTGCTTTGTGATCTT	NA	False	NA	NA	False	ATTAAA	-15	NA	133909958	133872123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_133874776_133878396_133878497_133891312_133891379_133892883_133893059_133893145_133893248_133894287_133894395_133909659
transcript_6251.known	chr11	+	2930	3	FSM	ENSMUSG00000020453.18	ENSMUST00000094471.10	2930	3	0	0	0	0	multi-exon	TRUE	canonical	3	69	junction_2	176	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGAGGCTTTGTGTGTTTT	6006	False	NA	NA	False	GATAAA	-17	NA	3239992	3245429	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_3241885_3243279_3243344_3244455
transcript_62511.known	chrX	-	3698	5	FSM	ENSMUSG00000079432.2	ENSMUST00000113183.2	3698	5	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_3	56.4933624419719	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCCATGAGATTCATTTA	NA	False	NA	NA	False	AGTAAA	-16	NA	134078381	134068372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_134070935_134071511_134072097_134073399_134073700_134077932_134078052_134078249
transcript_62513.known	chrX	+	3677	5	FSM	ENSMUSG00000094004.8	ENSMUST00000113173.8	3677	5	0	0	0	0	multi-exon	FALSE	canonical	3	153	junction_2	39.7955713616478	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATGTTACTAAAATTTAAGT	NA	False	NA	NA	False	NA	NA	NA	134274032	134283975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_134274160_134274357_134274485_134278675_134278976_134280276_134280862_134281437
transcript_62514.known	chrX	+	3519	5	FSM	ENSMUSG00000096508.8	ENSMUST00000179953.2	3519	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	73.4825659595526	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAGAATGGAGAATTAATGA	NA	False	NA	NA	False	AATAAA	-21	NA	134334583	134344429	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_134334711_134334908_134335028_134339279_134339580_134340880_134341466_134342041
transcript_62515.known	chrX	+	3698	5	FSM	ENSMUSG00000054994.3	ENSMUST00000068340.3	3698	5	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_2	53.6516542149448	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCCATGAGATTCATTTA	NA	False	NA	NA	False	AGTAAA	-16	NA	134395336	134405343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_134395469_134395666_134395786_134400016_134400317_134401619_134402205_134402781
transcript_62519.known	chrX	-	2233	23	FSM	ENSMUSG00000031410.15	ENSMUST00000113163.8	2233	23	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_18	1.12540167301272	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCCTGGATTCTTCTTTGC	NA	False	NA	NA	False	AATAAA	-18	NA	134499526	134480303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_134480575_134480703_134480765_134483832_134484016_134484471_134484539_134485101_134485145_134485235_134485352_134485452_134485512_134485645_134485754_134485889_134485946_134486029_134486099_134486514_134486552_134487985_134488096_134488266_134488375_134488481_134488571_134488715_134488786_134488930_134489012_134489121_134489227_134489324_134489409_134489679_134489831_134490065_134490220_134493014_134493045_134494561_134494643_134499426
transcript_62521.known	chrX	-	1776	10	FSM	ENSMUSG00000058252.7	ENSMUST00000078605.7	1776	10	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_3	2.8588178511708	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATCAGTGTCTTTTATGATG	6971	False	NA	NA	False	AATAAA	-20	NA	134594539	134555446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_134555875_134558185_134558350_134559471_134559654_134559749_134559968_134561192_134561330_134565131_134565353_134566154_134566276_134570064_134570177_134593910_134594046_134594481
transcript_62522.known	chrX	-	544	5	FSM	ENSMUSG00000060726.11	ENSMUST00000113154.8	544	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	4.9180788932265	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGGCTTGTTTTTGTAA	NA	False	NA	NA	False	AATAAA	-26	NA	134626010	134619415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_134619503_134620414_134620520_134621315_134621402_134624106_134624186_134625823
transcript_62523.known	chrX	-	299	3	FSM	ENSMUSG00000060726.11	ENSMUST00000073674.3	299	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	1	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGGCTTGTTTTTGTAA	NA	False	NA	NA	False	AATAAA	-26	NA	134621422	134619415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_134619503_134620414_134620520_134621315
transcript_62525.nnic	chrX	+	917	8	NNC	ENSMUSG00000084330.2	novel	434	5	NA	NA	-2229	5363	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	3.95381500088516	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAATCTTGTGTCCTGAGTTG	NA	False	NA	NA	False	AATAAA	-10	NA	134625517	134635586	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_134625674_134627458_134627605_134628012_134628123_134628832_134628921_134629024_134629068_134629488_134629566_134635168_134635227_134635347
transcript_62530.known	chrX	+	3814	7	FSM	ENSMUSG00000072966.12	ENSMUST00000173804.8	3814	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	54.6669207311169	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGACCCTTCTTCACTTTAA	NA	False	NA	NA	False	AATAAA	-24	NA	134739782	134745479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_134740012_134740493_134740622_134741141_134741219_134741367_134741440_134741601_134741674_134741969_134742053_134742326
transcript_62531.known	chrX	+	837	6	FSM	ENSMUSG00000043384.16	ENSMUST00000149595.8	837	6	0	0	0	0	multi-exon	TRUE	canonical	3	40	junction_5	28.5629130167075	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAATAGATTCTTCTCTC	NA	False	NA	NA	False	TTTAAA	-17	NA	134643481	134662739	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_134643728_134644311_134644364_134645247_134645325_134649404_134649532_134652693_134652767_134662477
transcript_62537.known	chrX	+	1058	5	FSM	ENSMUSG00000072964.15	ENSMUST00000148374.8	1058	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	89.3168517134365	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTGCTAGATCCACACGTAAA	NA	False	NA	NA	False	AGTAAA	-39	NA	134786601	134790075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_134786837_134787593_134787676_134788009_134788067_134789120_134789229_134789499
transcript_6254.known	chr11	-	3514	16	FSM	ENSMUSG00000020451.18	ENSMUST00000101638.4	3514	16	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_14	50.0611182012104	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGACAGAGAGTGCCAAAG	NA	False	NA	-6	True	AATAAA	-19	NA	3359174	3294255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3342916_3343017_3359045
transcript_62540.known	chrX	+	2823	5	FSM	ENSMUSG00000072964.15	ENSMUST00000068755.14	2823	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	79.1296404642407	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGTTTGTGTATATGA	NA	False	NA	10	True	AATAAA	-21	NA	134786601	134791830	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_134786847_134787593_134787676_134788009_134788067_134789120_134789229_134789499
transcript_62543.known	chrX	+	2779	4	FSM	ENSMUSG00000072969.3	ENSMUST00000096321.3	2779	4	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_3	8.05536398239638	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACATTGTTCCAGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	134643481	134648071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_134643728_134644311_134644364_134645247_134645325_134645667
transcript_62544.nic	chrX	+	2830	4	NIC	ENSMUSG00000072969.3	novel	2779	4	NA	NA	-22	0	combination_of_known_splicesites	FALSE	canonical	3	21	junction_1	31.6789449880446	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACATTGTTCCAGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	134643459	134648071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_134643728_134644190_134644272_134645247_134645325_134645667
transcript_62548.nic	chrX	+	2762	3	NIC	ENSMUSG00000072969.3	novel	2779	4	NA	NA	-35	0	combination_of_known_splicesites	FALSE	canonical	3	29	junction_1	31	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGAAAACATTGTTCCAGTTC	NA	False	NA	NA	False	AATAAA	-19	NA	134643446	134648071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_134643728_134645247_134645325_134645667
transcript_62549.known	chrX	+	3736	7	FSM	ENSMUSG00000072966.12	ENSMUST00000113136.8	3736	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	54.6669207311169	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAAATGACCCTTCTTCACT	NA	False	NA	NA	False	AATAAA	-20	NA	134739804	134745475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_134739998_134740531_134740622_134741141_134741219_134741367_134741440_134741601_134741674_134741969_134742053_134742326
transcript_6255.known	chr11	-	3693	15	FSM	ENSMUSG00000020451.18	ENSMUST00000101642.10	3693	15	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_14	38.572023804931	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGACAGAGAGTGCCAAAG	9814	False	NA	-6	True	AATAAA	-19	NA	3321376	3294255	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_3295885_3296234_3296393_3297051_3297108_3297573_3297749_3298593_3298660_3300391_3300449_3300641_3300774_3302290_3302378_3303276_3303464_3305272_3305470_3305810_3305917_3308109_3308299_3308994_3309105_3310450_3310587_3320968
transcript_62550.known	chrX	+	1532	1	FSM	ENSMUSG00000048040.9	ENSMUST00000058119.9	1532	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	109	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGTAGGTCCATTATTT	NA	False	NA	20	True	AATAAA	-17	NA	134894572	134896104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_134894600_134896100
transcript_62551.known	chrX	+	1580	1	FSM	ENSMUSG00000048355.3	ENSMUST00000057625.3	1580	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	44	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTTTGCTTCCTTTAT	NA	False	NA	22	True	AATAGA	-16	NA	134934115	134935695	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_134934100_134935700
transcript_62552.known	chrX	-	903	3	FSM	ENSMUSG00000042750.8	ENSMUST00000049130.8	903	3	0	0	0	0	multi-exon	FALSE	canonical	3	901	junction_2	34	929	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCTTAGTAGTTCTTTAAAGG	4156	False	NA	0	True	AATAAA	-18	NA	134968985	134967312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_134967957_134968348_134968422_134968799
transcript_62553.nnic	chrX	-	3078	21	NNC	ENSMUSG00000057000.13	novel	2978	19	NA	NA	-1	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_19	15.6232999075099	6	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTGTGTTTATATGTATG	NA	False	NA	NA	False	AATAAA	-25	NA	134985992	134972847	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_134974063_134974170_134974232_134974604_134974779_134975448_134975522_134976083_134976127_134976232_134976349_134976579_134976639_134976756_134976865_134977009_134977066_134977135_134977205_134977484_134977522_134978944_134979055_134979529_134979619_134979739_134979810_134979920_134979999_134980109_134980215_134980308_134980393_134981370_134981525_134981712_134981873_134982111_134982182_134985845
transcript_62558.known	chrX	+	837	3	FSM	ENSMUSG00000047844.4	ENSMUST00000116527.2	837	3	0	0	0	0	multi-exon	FALSE	canonical	3	2369	junction_2	964	2708	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGCTCAGTCATCTTCT	NA	False	NA	NA	False	AATAAA	-17	NA	135039744	135041192	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_135039916_135040271_135040349_135040603
transcript_62560.known	chrX	-	422	4	FSM	ENSMUSG00000051579.11	ENSMUST00000146583.2	422	4	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	323.806869737022	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAAGGGAGCCATAGAGGAGA	NA	False	NA	NA	False	NA	NA	NA	135072965	135071633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135071799_135072168_135072271_135072384_135072455_135072880
transcript_62561.known	chrX	-	1250	3	FSM	ENSMUSG00000051579.11	ENSMUST00000060101.10	1250	3	0	0	0	0	multi-exon	FALSE	canonical	3	703	junction_2	29	524	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTTGGTTAAGACTTGGTC	NA	False	NA	NA	False	NA	NA	NA	135073091	135070829	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135071799_135072384_135072455_135072880
transcript_62564.known	chrX	-	1044	3	FSM	ENSMUSG00000054034.11	ENSMUST00000066819.11	1044	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	0.5	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATCCAGTATCAGTCCATTT	NA	False	NA	NA	False	NA	NA	NA	135104625	135101696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135102563_135103133_135103202_135104515
transcript_62566.known	chrX	-	866	3	FSM	ENSMUSG00000050071.9	ENSMUST00000058125.9	866	3	0	0	0	0	multi-exon	FALSE	canonical	3	4595	junction_1	588.5	6399	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCTGTACTCATCTTTTC	NA	False	NA	-2	True	AATAAA	-17	NA	135116262	135114720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135115333_135115652_135115730_135116085
transcript_62567.known	chrX	-	754	3	FSM	ENSMUSG00000050071.9	ENSMUST00000113118.2	754	3	0	0	0	0	multi-exon	FALSE	canonical	3	367	junction_1	2702.5	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACCTATTGTGAACCTA	NA	False	NA	-43	True	NA	NA	NA	135116233	135114761	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135115333_135115694_135115730_135116085
transcript_62568.known	chrX	-	718	2	FSM	ENSMUSG00000050071.9	ENSMUST00000113120.2	718	2	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	0	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCCTCTGTACTCATCTTTT	NA	False	NA	-3	True	AATAAA	-16	NA	135116192	135114721	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135115333_135116085
transcript_6257.nic	chr11	-	1460	5	ISM	ENSMUSG00000020451.18	ENSMUST00000101638.4	3514	16	-28	13086	-13	910	5prime_fragment	FALSE	canonical	3	97	junction_3	84.1616747694579	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAATTGATGTGGTCATAGGA	NA	False	NA	NA	False	NA	NA	NA	3359202	3307341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_3308299_3308994_3309105_3310450_3310587_3342916_3343017_3359045
transcript_62570.known	chrX	+	1019	3	FSM	ENSMUSG00000042712.11	ENSMUST00000048687.11	1019	3	0	0	0	0	multi-exon	FALSE	canonical	3	2732	junction_2	36	1669	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCCAACAGCCCATCAATTTA	NA	False	NA	8	True	AATAAA	-24	NA	135145827	135147888	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_135145977_135146449_135146516_135147084
transcript_62573.known	chrX	+	930	3	FSM	ENSMUSG00000046432.13	ENSMUST00000053540.11	930	3	0	0	0	0	multi-exon	FALSE	canonical	3	4289	junction_2	392	2743	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTCTGAAATTCAACAGTATT	NA	False	NA	NA	False	AATAAA	-32	NA	135171009	135172727	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_135171151_135171558_135171632_135172011
transcript_62574.known	chrX	+	826	3	FSM	ENSMUSG00000046432.13	ENSMUST00000113112.2	826	3	0	0	0	0	multi-exon	FALSE	canonical	3	533	junction_2	2270	293	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGAGCCACAAGAACTCTGA	NA	False	NA	NA	False	AATAAA	-18	NA	135171053	135172713	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_135171151_135171558_135171632_135172057
transcript_62575.known	chrX	+	766	2	FSM	ENSMUSG00000046432.13	ENSMUST00000113113.2	766	2	0	0	0	0	multi-exon	FALSE	canonical	3	4289	junction_1	0	92	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTGTCCTTAAAGCAT	NA	False	NA	NA	False	AATAAA	-16	NA	135171523	135172669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_135171632_135172011
transcript_62576.known	chrX	+	2803	2	FSM	ENSMUSG00000049536.6	ENSMUST00000055104.6	2803	2	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	0	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTACTATAACAAGTATGC	NA	False	NA	NA	False	AATAAA	-21	NA	135608730	135612227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_135608838_135609531
transcript_62587.known	chrX	-	1859	4	FSM	ENSMUSG00000031422.17	ENSMUST00000080411.13	1859	4	0	0	0	0	multi-exon	FALSE	canonical	3	2872	junction_1	198.526236721162	461	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTGTGGTG	NA	False	NA	NA	False	AATAAA	-23	NA	135642101	135633701	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135641958
transcript_62588.known	chrX	-	1996	4	FSM	ENSMUSG00000031422.17	ENSMUST00000033797.13	1996	4	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_3	1439.93989072075	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	AATAAA	-34	NA	135642410	135633690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135642141
transcript_62589.known	chrX	-	462	4	FSM	ENSMUSG00000031422.17	ENSMUST00000152150.8	462	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	1452.09664508485	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGAGGTCGCTCTGCTGAGA	NA	False	NA	NA	False	NA	NA	NA	135643667	135635050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135643572
transcript_62590.known	chrX	-	1825	4	FSM	ENSMUSG00000031422.17	ENSMUST00000113097.8	1825	4	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_3	1449.75867723639	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGGTGTTCTTTTTATG	NA	False	NA	NA	False	AATAAA	-34	NA	135644439	135633690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135635251_135636294_135636372_135640553_135640644_135644341
transcript_62593.known	chrX	-	1720	3	FSM	ENSMUSG00000031422.17	ENSMUST00000166478.8	1720	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1436	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAAATGTGTGGTG	NA	False	NA	NA	False	AATAAA	-23	NA	135644435	135633701	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135635251_135636294_135636372_135644341
transcript_62594.known	chrX	+	1052	1	FSM	ENSMUSG00000048155.5	ENSMUST00000059808.5	1052	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGTTTCTGCTAGTTCAT	NA	False	NA	NA	False	AATAAA	-21	NA	135828073	135829125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_135828100_135829100
transcript_62596.known	chrX	-	816	4	FSM	ENSMUSG00000072955.15	ENSMUST00000127404.8	816	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	61.5918465022405	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTTGAGCAGATTGCACA	NA	False	NA	NA	False	AATAAA	-17	NA	135877618	135855736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135856232_135857483_135857589_135876146_135876252_135877507
transcript_62597.nnic	chrX	-	392	3	NNC	ENSMUSG00000089996.7	novel	450	3	NA	NA	48	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	91	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTAACTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	135858726	135856013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_135856222_135857483_135857589_135858647
transcript_62598.known	chrX	-	450	3	FSM	ENSMUSG00000089996.7	ENSMUST00000069803.5	450	3	0	0	0	0	multi-exon	FALSE	canonical	3	182	junction_2	19	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTAACTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	135858774	135856013	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135856232_135857483_135857589_135858647
transcript_626.known	chr1	+	662	5	FSM	ENSMUSG00000026087.12	ENSMUST00000193673.6	662	5	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_1	367.71796257458	130	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCACTTCGTTCAGTTCTCTC	NA	False	NA	46	True	NA	NA	NA	37929612	37937445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_37929666_37933019_37933097_37934410_37934492_37936768_37936916_37937141
transcript_6260.nic	chr11	-	1392	4	ISM	ENSMUSG00000020451.18	ENSMUST00000101640.10	3711	16	-18	13323	-18	673	5prime_fragment	FALSE	canonical	3	120	junction_3	71.1243043316887	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCAGCCCCACTTAAATGTT	9796	False	NA	NA	False	NA	NA	NA	3321394	3307578	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_3308299_3308994_3309105_3310450_3310587_3320968
transcript_62600.nnic	chrX	-	441	3	NNC	ENSMUSG00000089768.3	novel	439	3	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	65.5	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTAACTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	135877635	135874770	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_135874979_135876146_135876252_135877507
transcript_62601.known	chrX	-	439	3	FSM	ENSMUSG00000089768.3	ENSMUST00000113071.2	439	3	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	50	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGTGTGTAACTTCCTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	135877623	135874770	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135874989_135876146_135876252_135877507
transcript_62604.known	chrX	-	1737	7	FSM	ENSMUSG00000044348.15	ENSMUST00000125747.8	1737	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	13.5359603361646	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGAGATTATCCCTAGTT	NA	False	NA	NA	False	NA	NA	NA	135938781	135903530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135930774_135930849_135933099_135933250_135938678
transcript_62605.known	chrX	-	3440	7	FSM	ENSMUSG00000044348.15	ENSMUST00000145842.8	3440	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	12.9871731591854	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAATGTGAGAGTTTAAATT	NA	False	NA	NA	False	ATTAAA	-16	NA	135939051	135901803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135930774_135930849_135933099_135933250_135938972
transcript_6261.known	chr11	-	400	2	FSM	ENSMUSG00000020451.18	ENSMUST00000145223.2	400	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATCTATTGAATTTAGCAATC	NA	False	NA	NA	False	AATAAA	-29	NA	3359189	3346778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_3347035_3359045
transcript_62611.nnic	chrX	-	1699	6	NIC	ENSMUSG00000044348.15	novel	1740	7	NA	NA	-2	0	combination_of_known_splicesites	FALSE	canonical	3	7	junction_4	11.7813411800185	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAGAGAGATTATCCCTAGTT	NA	False	NA	NA	False	NA	NA	NA	135939053	135903530	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135933099_135933250_135938914
transcript_62614.known	chrX	-	843	2	FSM	ENSMUSG00000044348.15	ENSMUST00000132171.2	843	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAAAGTAAAAAGT	NA	False	NA	NA	False	AGTAAA	-7	NA	135939051	135932543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135933250_135938914
transcript_62615.known	chrX	-	1740	7	FSM	ENSMUSG00000044348.15	ENSMUST00000123516.8	1740	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	9.36304793679209	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATAGAGAGATTATCCCTAGT	NA	False	NA	NA	False	NA	NA	NA	135939021	135903531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_135904559_135916005_135916132_135916997_135917089_135928738_135928904_135930774_135930849_135933099_135933250_135938914
transcript_62616.known	chrX	-	1600	5	FSM	ENSMUSG00000023443.14	ENSMUST00000074698.3	1600	5	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_4	18.0052075800308	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGCTTTGAGAGTTATA	NA	False	NA	-1	True	AATAAA	-18	NA	136021075	136016145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_136016755_136018006_136018053_136019115_136019552_136020319_136020446_136020692
transcript_62617.known	chrX	-	1692	4	FSM	ENSMUSG00000023443.14	ENSMUST00000113066.9	1692	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_3	6.23609564462324	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGGCTTTGAGAGTTATA	NA	False	NA	-1	True	AATAAA	-18	NA	136020920	136016145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_136016755_136018006_136018053_136019115_136019552_136020319
transcript_62618.known	chrX	-	712	4	FSM	ENSMUSG00000086807.9	ENSMUST00000126591.2	712	4	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	6.59966329107444	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTCCAGTTTGAGCTG	NA	False	NA	NA	False	AATAAA	-12	NA	138258487	138248239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_138248639_138255751_138255851_138257038_138257123_138258357
transcript_62620.known	chrX	+	1178	3	FSM	ENSMUSG00000051257.4	ENSMUST00000054534.4	1178	3	0	0	0	0	multi-exon	FALSE	canonical	3	2592	junction_2	198.5	1878	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGTTGTTTCACGTTAACGT	NA	False	NA	20	True	AATAAA	-21	NA	138234431	138238918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_138235157_138237570_138237800_138238694
transcript_62623.known	chrX	-	3862	17	FSM	ENSMUSG00000031434.16	ENSMUST00000087401.12	3862	17	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	16.8851821133205	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAGTAGGCTTGAATTTGGG	NA	False	NA	-12	True	AATAAA	-17	NA	138772426	138722652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_138723578_138723878_138724163_138724714_138725394_138735158_138735332_138736684_138736737_138737233_138737303_138738602_138738732_138741446_138741537_138750397_138750499_138752761_138752882_138755158_138755288_138755607_138755741_138758496_138758645_138759547_138759766_138765243_138765377_138771818_138771892_138772020
transcript_62624.known	chrX	-	2195	6	FSM	ENSMUSG00000031434.16	ENSMUST00000113014.8	2195	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	25.9044397739075	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAAAACACTTTTTTCCTG	NA	False	NA	NA	False	AATAAA	-5	NA	138772371	138757103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_138758376_138758496_138758645_138759547_138759766_138765243_138765377_138771818_138771892_138772020
transcript_62629.nic	chrX	-	1955	9	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	-69	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_8	170.821864452417	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	-9	True	AATAAA	-16	NA	138963111	138907553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138962996
transcript_6263.known	chr11	-	2787	7	FSM	ENSMUSG00000020448.17	ENSMUST00000077078.12	2787	7	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_2	17.6391294821737	97	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGAGTGTGGAGCTTGTG	6815	False	NA	-5	True	ATTAAA	-14	NA	3402363	3365981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3382399_3382621_3402208
transcript_62630.known	chrX	-	1996	9	FSM	ENSMUSG00000072944.12	ENSMUST00000101212.9	1996	9	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_8	135.330151850946	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	-9	True	AATAAA	-16	NA	138963317	138907553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963161
transcript_62631.nic	chrX	-	2010	9	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	-16	0	combination_of_known_junctions	FALSE	canonical	3	238	junction_8	106.849119673491	250	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	-9	True	AATAAA	-16	NA	138963477	138907553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928316_138928452_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963307
transcript_62635.nnic	chrX	-	1750	8	NIC	ENSMUSG00000072944.12	novel	1996	9	NA	NA	-23	0	combination_of_known_splicesites	FALSE	canonical	3	17	junction_3	199.257704124737	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAGTGGCTGAACTGGGTTT	NA	False	NA	-9	True	AATAAA	-16	NA	138963352	138907553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_138908616_138922769_138922837_138925977_138926090_138928587_138928638_138928886_138929038_138935506_138935664_138939798_138939905_138963307
transcript_6265.known	chr11	-	643	6	FSM	ENSMUSG00000020448.17	ENSMUST00000144055.2	643	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	57.6485906159032	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGGAGTTGGAACTCAAAAC	6844	False	NA	NA	False	NA	NA	NA	3402334	3367875	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_3368088_3369861_3369980_3375281_3375337_3376565_3376679_3378883_3378903_3402208
transcript_62651.known	chrX	+	1965	7	FSM	ENSMUSG00000031432.4	ENSMUST00000033809.4	1965	7	0	0	0	0	multi-exon	FALSE	canonical	3	1771	junction_6	191.019850626403	3087	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTGGGTGTACTGTCATA	NA	False	NA	27	True	AATAAA	-19	NA	139357361	139376889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_139357613_139365979_139366164_139368420_139368520_139369583_139369709_139372745_139372920_139374527_139374688_139375917
transcript_62669.known	chrX	-	1790	3	FSM	ENSMUSG00000031431.14	ENSMUST00000112995.3	1790	3	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_2	112.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTGAGTGCATAA	NA	False	NA	NA	False	AATAAA	-26	NA	139443417	139440276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_139441857_139442853_139442906_139443259
transcript_6267.known	chr11	+	1675	2	FSM	ENSMUSG00000034587.9	ENSMUST00000146456.2	1675	2	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATATAAGGACTGTAGCTT	NA	False	NA	NA	False	AATAAA	-17	NA	3402471	3408338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_3402571_3406762
transcript_62671.known	chrX	-	1974	3	FSM	ENSMUSG00000031431.14	ENSMUST00000055738.12	1974	3	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_2	61	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGGTGTGTGAGTGCATAA	NA	False	NA	NA	False	AATAAA	-26	NA	139443936	139440276	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_139441857_139442853_139442906_139443594
transcript_62673.known	chrX	-	1430	5	FSM	ENSMUSG00000031429.15	ENSMUST00000033805.15	1430	5	0	0	0	0	multi-exon	FALSE	canonical	3	522	junction_1	39.0024037720754	246	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCCCAATTTCTCATTC	NA	False	NA	-8	True	AATAAA	-11	NA	139857438	139849177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_139850059_139852895_139853063_139853153_139853301_139854548_139854648_139857302
transcript_62674.known	chrX	-	1390	5	FSM	ENSMUSG00000031429.15	ENSMUST00000112978.2	1390	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	228.562218006389	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCTCCCAATTTCTCATTC	NA	False	NA	-8	True	AATAAA	-11	NA	139857477	139849177	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_139850059_139852974_139853063_139853153_139853301_139854548_139854648_139857302
transcript_6268.known	chr11	+	707	5	FSM	ENSMUSG00000075702.11	ENSMUST00000094469.6	707	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_4	6.04152298679729	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCGGAGTCTCTTCTTATTT	NA	False	NA	22	True	ACTAAA	-14	NA	3464866	3467351	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_3465074_3466260_3466297_3466485_3466521_3466841_3466921_3467001
transcript_62680.known	chrX	+	2202	13	FSM	ENSMUSG00000079418.6	ENSMUST00000112971.2	2202	13	0	0	0	0	multi-exon	FALSE	canonical	2	18	junction_1	12.4707992259251	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACGTTTCAGGACTAAAA	NA	False	NA	NA	False	ATTAAA	-10	NA	139857655	139947266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_139857721_139887027_139887139_139888914_139888987_139890906_139891006_139893565_139893668_139893817_139893891_139895351_139895432_139896010_139896190_139896311_139896391_139941722_139941869_139943027_139943085_139945462_139945572_139946236
transcript_62682.known	chrX	+	2091	12	FSM	ENSMUSG00000079418.6	ENSMUST00000239541.1	2091	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_2	18.0797133013179	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGACGTTTCAGGACTAAAA	NA	False	NA	NA	False	ATTAAA	-10	NA	139857694	139947266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_139857721_139887027_139887139_139890906_139891006_139893565_139893668_139893817_139893891_139895351_139895432_139896010_139896190_139896311_139896391_139941722_139941869_139943027_139943085_139945462_139945572_139946236
transcript_62683.known	chrX	+	2532	5	FSM	ENSMUSG00000042271.14	ENSMUST00000112916.9	2532	5	0	0	0	0	multi-exon	FALSE	canonical	3	188	junction_1	39.4865483424419	237	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141009765	141022688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_141009928_141011286_141011378_141012519_141012607_141019779_141019925_141020641
transcript_62684.known	chrX	+	2447	5	FSM	ENSMUSG00000042271.14	ENSMUST00000042329.12	2447	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	115.070358911407	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141010932	141022688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_141011010_141011286_141011378_141012519_141012607_141019779_141019925_141020641
transcript_62685.nnic	chrX	+	2472	4	NIC	ENSMUSG00000042271.14	novel	2532	5	NA	NA	-27	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	108.812785196512	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141009738	141022688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_141009928_141011286_141011378_141019779_141019925_141020641
transcript_62686.known	chrX	+	2484	4	FSM	ENSMUSG00000042271.14	ENSMUST00000112914.8	2484	4	0	0	0	0	multi-exon	FALSE	canonical	3	263	junction_3	9.93310961716756	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141011172	141022688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_141011378_141012519_141012607_141019779_141019925_141020641
transcript_62687.known	chrX	+	2538	4	FSM	ENSMUSG00000042271.14	ENSMUST00000112913.2	2538	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	129.476724635056	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTTCTCAAGTCTTTCTTA	NA	False	NA	11	True	AATAAA	-22	NA	141011698	141022688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_141011958_141012519_141012607_141019779_141019925_141020641
transcript_62688.known	chrX	-	5280	16	FSM	ENSMUSG00000031278.13	ENSMUST00000033634.5	5280	16	0	0	0	0	multi-exon	TRUE	canonical	3	129	junction_14	18.9168942717585	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCAGTTTGTTTTTTCTTAT	NA	False	NA	-3	True	AATAAA	-18	NA	141173531	141100988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_141103831_141110971_141111130_141111843_141111959_141115187_141115380_141116665_141116741_141121879_141122053_141122945_141123086_141124330_141124403_141126069_141126194_141126302_141126454_141128423_141128563_141131997_141132108_141133955_141134134_141134374_141134905_141143382_141143433_141173300
transcript_62690.known	chrX	+	476	5	FSM	ENSMUSG00000041718.17	ENSMUST00000144185.5	476	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_3	353.473478495912	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGGGCTGTTACAGTCAA	NA	False	NA	NA	False	NA	NA	NA	143101018	143107017	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_143101118_143102998_143103058_143105007_143105147_143106350_143106524_143107011
transcript_62692.known	chrX	+	479	4	FSM	ENSMUSG00000041718.17	ENSMUST00000149330.8	479	4	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_3	280.483313031077	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TAAAATCAAAATAAATTCAT	NA	False	NA	40	True	TTTAAA	-31	NA	143100998	143107173	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_143101118_143102998_143103058_143105007_143105147_143107011
transcript_62695.known	chrX	+	1802	4	FSM	ENSMUSG00000041718.17	ENSMUST00000070801.11	1802	4	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_3	294.754511792818	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGACTTGGCTGTTACTTTTT	NA	False	NA	NA	False	AATAAA	-19	NA	143100799	143108193	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_143101118_143102894_143103058_143105007_143105147_143107011
transcript_62702.known	chrX	+	2028	7	FSM	ENSMUSG00000072930.4	ENSMUST00000112796.2	2028	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	7.43303437365925	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTGTTTGTGTGTGTG	1209	False	NA	NA	False	AATAAA	-19	NA	146963719	147007706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_146963812_146980956_146981083_146981801_146981882_146985542_146986502_146999377_146999460_147000265_147000316_147007067
transcript_62704.known	chrX	+	2026	7	FSM	ENSMUSG00000096834.8	ENSMUST00000101186.10	2026	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	5.30461015427985	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	147446593	147486845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_147446686_147463739_147463866_147464585_147464666_147468313_147469273_147478430_147478513_147479317_147479368_147486208
transcript_62705.known	chrX	+	1972	8	FSM	ENSMUSG00000096834.8	ENSMUST00000101190.11	1972	8	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	4.38922614163921	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	147446599	147486845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_147446686_147463739_147463862_147464581_147464666_147468313_147468993_147469040_147469273_147478430_147478513_147479317_147479368_147486208
transcript_62707.known	chrX	+	2025	7	FSM	ENSMUSG00000079387.11	ENSMUST00000163338.2	2025	7	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_3	4.85626742811116	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	147665571	147707135	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_147665664_147686432_147686559_147687278_147687359_147690981_147691941_147698819_147698902_147699707_147699758_147706499
transcript_62708.known	chrX	+	2028	7	FSM	ENSMUSG00000094885.8	ENSMUST00000177554.2	2028	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	5.58022301426107	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTGTGTTTGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	147880947	147921148	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_147881040_147898081_147898208_147898926_147899007_147902668_147903628_147912815_147912898_147913703_147913754_147920509
transcript_62710.known	chrX	+	2028	7	FSM	ENSMUSG00000095621.2	ENSMUST00000178169.2	2028	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_1	6.67707520800338	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTGTGTTTGTTT	NA	False	NA	NA	False	AATAAA	-19	NA	148230612	148270780	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_148230705_148247706_148247833_148248551_148248632_148252302_148253262_148262449_148262532_148263337_148263388_148270141
transcript_62711.known	chrX	+	1977	7	FSM	ENSMUSG00000072923.7	ENSMUST00000101181.5	1977	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	5.06622805119022	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	148377565	148419760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_148377658_148394767_148394894_148395612_148395693_148399354_148400266_148411437_148411520_148412325_148412376_148419124
transcript_62715.known	chrX	+	2029	7	FSM	ENSMUSG00000094378.8	ENSMUST00000101180.8	2029	7	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_6	4.6785562825394	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTTGTGTTTGT	NA	False	NA	NA	False	AATAAA	-19	NA	148567468	148609690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_148567561_148582582_148582709_148583428_148583509_148587159_148588119_148601122_148601205_148602010_148602061_148609050
transcript_62716.known	chrX	+	2026	7	FSM	ENSMUSG00000095082.2	ENSMUST00000112740.2	2026	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	4.07226390762354	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTTTTTTGTGTTTGTT	NA	False	NA	NA	False	AATAAA	-19	NA	148724650	148767978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_148724743_148744867_148744994_148745713_148745794_148749452_148750412_148759566_148759649_148760454_148760505_148767341
transcript_62717.known	chrX	-	669	3	FSM	ENSMUSG00000041353.13	ENSMUST00000128771.2	669	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_2	123	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GTTAAAATAGCAGCATGAGG	NA	False	NA	NA	False	NA	NA	NA	149223901	149192166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_149192597_149203337_149203438_149223762
transcript_62718.known	chrX	-	1316	3	FSM	ENSMUSG00000041353.13	ENSMUST00000148968.8	1316	3	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_2	83.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGACTTGAGAGGTATT	NA	False	NA	NA	False	GATAAA	-21	NA	149242150	149191573	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_149192597_149203337_149203438_149241957
transcript_62719.known	chrX	-	864	3	FSM	ENSMUSG00000041353.13	ENSMUST00000151067.8	864	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	131	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATTTTCTCATTCTGATATG	NA	False	NA	NA	False	NA	NA	NA	149242150	149191915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_149192597_149203337_149203438_149242067
transcript_6272.known	chr11	-	3335	21	FSM	ENSMUSG00000020439.18	ENSMUST00000020721.15	3335	21	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_20	9.90908673894825	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGACTTTTCTCTGCTG	8137	False	NA	-6	True	GATAAA	-17	NA	3489292	3467522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_3467828_3470751_3470917_3471816_3471969_3472460_3472579_3472774_3472949_3474632_3474727_3474882_3474946_3475041_3475207_3476164_3476241_3476327_3476481_3479439_3479613_3479766_3480283_3480369_3480442_3481044_3481118_3481201_3481523_3482410_3482509_3482597_3482677_3482760_3482855_3483374_3483524_3487322_3487437_3489111
transcript_62720.known	chrX	-	1250	3	FSM	ENSMUSG00000041353.13	ENSMUST00000141948.8	1250	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	125	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTGACTTGAGAGGTATT	NA	False	NA	NA	False	GATAAA	-21	NA	149224102	149191573	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_149192597_149203337_149203438_149223975
transcript_62727.nic	chrX	+	2107	16	NIC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-29	0	combination_of_known_junctions	TRUE	canonical	3	14	junction_2	17.6227126175286	16	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371195	149426874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_149371339_149371940_149372041_149372791_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
transcript_62728.nnic	chrX	+	1963	16	NNC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_2	17.171552702718	7	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371195	149426874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_149371339_149371940_149372041_149372935_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
transcript_62729.nic	chrX	+	1950	16	NIC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-29	0	combination_of_known_junctions	FALSE	canonical	3	50	junction_2	10.2058806577385	31	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371195	149426874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_149371339_149371940_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
transcript_6273.known	chr11	-	3059	2	FSM	ENSMUSG00000048807.3	ENSMUST00000051207.2	3059	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACCTCTGTCATTCCTTGG	NA	False	NA	NA	False	AATAAA	-16	NA	3864664	3857021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_3857985_3862568
transcript_62730.nnic	chrX	+	1872	16	NNC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-22	0	at_least_one_novel_splicesite	FALSE	canonical	1	6	junction_1	20.2546016719384	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371202	149426874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_149371268_149371940_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
transcript_62731.nnic	chrX	+	2132	16	NNC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_2	22.4049597683688	5	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371241	149426874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_149371410_149371940_149372041_149372791_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
transcript_62733.nnic	chrX	+	1975	16	NNC	ENSMUSG00000025271.14	novel	1739	14	NA	NA	-10	0	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_1	17.7330827049958	8	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTTCTTTCATTGTTCTC	NA	False	NA	19	True	AATAAA	-37	NA	149371241	149426874	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_149371410_149371940_149372041_149372948_149373081_149391581_149391708_149394001_149394096_149395908_149395976_149396872_149396948_149403764_149403822_149405077_149405200_149408152_149408361_149411735_149411883_149417518_149417624_149422576_149422707_149424910_149424974_149426164_149426230_149426558
transcript_62736.known	chrX	-	795	6	FSM	ENSMUSG00000025269.17	ENSMUST00000140207.8	795	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	34.2963554915096	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCTGCTGGTCAGTGGTCA	NA	False	NA	NA	False	AAAACA	-13	NA	149371067	149355544	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369042_149370038_149370123_149370888
transcript_62737.known	chrX	-	1884	6	FSM	ENSMUSG00000025269.17	ENSMUST00000026303.16	1884	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	8.28009661779378	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACCATGTTGAGTGGATAT	NA	False	NA	-4	True	AATAAA	-21	NA	149371145	149354503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_149355679_149367460_149367531_149368196_149368344_149368860_149369042_149370038_149370123_149370918
transcript_62740.nic	chrX	-	2193	13	NIC	ENSMUSG00000025268.16	novel	2107	13	NA	NA	-30	0	intron_retention	FALSE	canonical	3	35	junction_12	45.1259810604342	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	0	True	NA	NA	NA	149595994	149589416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149595816
transcript_62741.known	chrX	-	2107	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_12	38.0929965858409	70	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	0	True	NA	NA	NA	149596703	149589416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149596611
transcript_62742.known	chrX	-	2183	13	FSM	ENSMUSG00000025268.16	ENSMUST00000112699.9	2183	13	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_12	47.4332864839309	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCGTCAAAGTTTCCATCTG	NA	False	NA	51	True	TTTAAA	-5	NA	149597341	149589365	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666_149595734_149597224
transcript_62743.nic	chrX	-	2273	12	ISM	ENSMUSG00000025268.16	ENSMUST00000112700.8	2107	13	712	0	-27	0	3prime_fragment	FALSE	canonical	3	154	junction_9	18.0545546095372	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATTGCCATTTTTGTTT	NA	False	NA	0	True	NA	NA	NA	149595991	149589416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_149589552_149589705_149590178_149590567_149590683_149591716_149591780_149592105_149592149_149592242_149592323_149592698_149592794_149593339_149593420_149593676_149593741_149593869_149594179_149594818_149595311_149595666
transcript_6275.nnic	chr11	-	1901	10	NNC	ENSMUSG00000020432.13	novel	1949	10	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_9	43.1225643434566	25	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882053	3867191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881531_3881975
transcript_62750.known	chrX	-	1318	4	FSM	ENSMUSG00000025264.13	ENSMUST00000166010.2	1318	4	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_3	140.42158745087	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTATCCATTGTCCTCCCC	NA	False	NA	-3	True	AATAAA	-21	NA	149879539	149872476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_149873411_149873600_149873778_149874671_149874764_149879424
transcript_62751.known	chrX	-	483	1	FSM	ENSMUSG00000083596.5	ENSMUST00000121545.2	483	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGTACACAAAGAAATAAAAT	NA	False	NA	NA	False	NA	NA	NA	149998645	149998162	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_149998200_149998600
transcript_62757.known	chrX	+	992	6	FSM	ENSMUSG00000025260.11	ENSMUST00000112617.4	992	6	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_3	696.467486678309	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGCAGTCTTGTGTG	NA	False	NA	16	True	AATAAA	-16	NA	150784840	150787438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_150784931_150785273_150785439_150786356_150786522_150786618_150786778_150786857_150786967_150787134
transcript_62758.known	chrX	+	962	6	FSM	ENSMUSG00000025260.11	ENSMUST00000026289.10	962	6	0	0	0	0	multi-exon	FALSE	canonical	3	1359	junction_1	187.651165730459	1547	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTGTGCAGTCTTGTGTG	NA	False	NA	16	True	AATAAA	-16	NA	150784840	150787438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_150784931_150785273_150785439_150786356_150786522_150786648_150786778_150786857_150786967_150787134
transcript_6276.nnic	chr11	-	1882	10	NNC	ENSMUSG00000020432.13	novel	1943	10	NA	NA	7	0	at_least_one_novel_splicesite	FALSE	canonical	1	4	junction_9	46.5015597773709	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882071	3867191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881531_3882012
transcript_62761.nnic	chrX	-	1537	8	NIC	ENSMUSG00000025257.6	novel	1508	8	NA	NA	10	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_7	33.0126753640761	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTGTCGTAAGAGTA	NA	False	NA	-2	True	AATAAA	-17	NA	150799281	150787577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_150787807_150787914_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799119
transcript_62762.known	chrX	-	1508	8	FSM	ENSMUSG00000025257.6	ENSMUST00000026288.5	1508	8	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_7	14.6816559150582	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTGTCGTAAGAGTA	NA	False	NA	-2	True	AATAAA	-17	NA	150799291	150787577	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_150787807_150787914_150788310_150788734_150788854_150790211_150790557_150790742_150790825_150792520_150792638_150798776_150798865_150799158
transcript_62766.known	chrX	+	4691	25	FSM	ENSMUSG00000041133.12	ENSMUST00000045312.6	4691	25	0	0	0	0	multi-exon	TRUE	canonical	3	535	junction_3	101.202320735358	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCCTCTAGCTTCAATTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	150799423	150845690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_150799637_150805741_150805931_150806034_150806148_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
transcript_62768.nic	chrX	+	3632	23	NIC	ENSMUSG00000041133.12	novel	4691	25	NA	NA	33	-724	combination_of_known_junctions	FALSE	canonical	3	167	junction_1	147.492463737996	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGAGCCTAATCTAAATTTGA	NA	False	NA	17	True	AATAAA	-21	NA	150799456	150844966	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097_150819245_150819336_150819475_150820365_150820483_150820586_150820694_150824322_150824465_150829655_150829802_150829890_150830045_150830853_150830965_150841774_150841932_150842353_150842509_150842623_150842776_150843971_150844042_150844288_150844400_150844721
transcript_6277.known	chr11	-	1945	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109992.8	1945	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	47.4250545858319	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3881789	3867191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881724
transcript_62772.known	chrX	+	1824	10	FSM	ENSMUSG00000041133.12	ENSMUST00000145518.8	1824	10	0	0	0	0	multi-exon	FALSE	canonical	3	167	junction_1	207.77290546872	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAGAAAAAAAAGAACGTTT	NA	False	NA	NA	False	NA	NA	NA	150799423	150819208	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_150799637_150809233_150809438_150809527_150809767_150810689_150810949_150811036_150811178_150811960_150812044_150812186_150812395_150816694_150816881_150816975_150817156_150819097
transcript_62776.known	chrX	+	959	3	FSM	ENSMUSG00000041115.17	ENSMUST00000146835.8	959	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTCTGTCTGATGTATGT	NA	False	NA	NA	False	AATAAA	-12	NA	150961959	150977597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_150962087_150963992_150964089_150976861
transcript_62778.known	chrX	-	584	3	FSM	ENSMUSG00000087403.10	ENSMUST00000148326.8	584	3	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_1	13.5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACAGCGAGATTTGTCAGGC	NA	False	NA	NA	False	NA	NA	NA	151110491	151081495	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_151081871_151110156_151110236_151110361
transcript_6278.known	chr11	-	1949	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109989.10	1949	10	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_9	32.7813557369218	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882044	3867191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3881975
transcript_62780.known	chrX	-	2696	7	FSM	ENSMUSG00000041096.14	ENSMUST00000044509.7	2696	7	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_2	16.4189930669738	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCCTCTTGGAGTCTTTTG	NA	False	NA	-4	True	AATAAA	-17	NA	151125421	151119850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_151120562_151121720_151122389_151122628_151122724_151122857_151123004_151123081_151123194_151123298_151123377_151124535
transcript_62782.known	chrX	-	2804	6	FSM	ENSMUSG00000041096.14	ENSMUST00000149685.8	2804	6	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_2	17.9844377170931	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTTGGAGTCTTTTGTCC	NA	False	NA	-1	True	AATAAA	-20	NA	151125421	151119847	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_151120562_151121720_151122389_151122628_151122724_151122857_151123004_151123081_151123377_151124535
transcript_62784.known	chrX	-	998	3	FSM	ENSMUSG00000056679.14	ENSMUST00000137840.2	998	3	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	2	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATCTGTGTTTATAGGATG	NA	False	NA	NA	False	NA	NA	NA	151151700	151150011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_151150266_151150416_151150507_151151046
transcript_62785.known	chrX	+	1586	9	FSM	ENSMUSG00000025333.11	ENSMUST00000026383.4	1586	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_8	3.91910385164772	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTAACTCCATTTTGACATG	NA	False	NA	NA	False	AATAAA	-10	NA	151564981	151591642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_151565289_151568038_151568149_151569121_151569217_151573479_151573573_151576324_151576435_151578551_151578661_151580695_151580814_151581373_151581612_151591236
transcript_62789.known	chrX	-	651	1	FSM	ENSMUSG00000095597.3	ENSMUST00000178147.3	651	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	17782	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	95	TAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	AATAAA	-14	NA	151693151	151692500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_151692500_151693200
transcript_6279.known	chr11	-	2027	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109993.9	2027	10	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_9	35.4989132158461	75	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3882159	3867191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881588_3882012
transcript_62790.known	chrX	-	1410	1	FSM	ENSMUSG00000047238.5	ENSMUST00000051484.5	1410	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	105	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTTTGTTCATTTATTGTC	NA	False	NA	NA	False	AATAAA	-17	NA	151820571	151819161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_151819200_151820600
transcript_62791.known	chrX	+	2258	11	FSM	ENSMUSG00000041658.13	ENSMUST00000039720.11	2258	11	0	0	0	0	multi-exon	FALSE	canonical	3	216	junction_4	30.0765689532566	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCAGTGTCTGTGTTTCTT	3176	False	NA	NA	False	AATAAA	-17	NA	151922976	151954939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_151923572_151924359_151924394_151926971_151927072_151931447_151931532_151933357_151933425_151936126_151936350_151941190_151941287_151943397_151943521_151946073_151946166_151953182_151953299_151954211
transcript_62792.nnic	chrX	+	2214	11	NNC	ENSMUSG00000041658.13	novel	2258	11	NA	NA	-23	18249	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_10	82.4209318073995	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACAACAACAACTGAATGA	3153	False	NA	NA	False	NA	NA	NA	151922953	151973188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_151923572_151924359_151924394_151926971_151927072_151931447_151931532_151933357_151933425_151936126_151936350_151941190_151941287_151943397_151943521_151946073_151946166_151953182_151953299_151972527
transcript_62795.nnic	chrX	+	2130	10	NNC	ENSMUSG00000041658.13	novel	2258	11	NA	NA	-23	18249	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_9	101.125884146664	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	CAACAACAACAACTGAATGA	3153	False	NA	NA	False	NA	NA	NA	151922953	151973188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_151923572_151924359_151924394_151926971_151927072_151933357_151933425_151936126_151936350_151941190_151941287_151943397_151943521_151946073_151946166_151953182_151953299_151972527
transcript_62796.known	chrX	+	666	2	FSM	ENSMUSG00000048573.10	ENSMUST00000056754.4	666	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGTCACTCTGTCTCTGAT	NA	False	NA	NA	False	NA	NA	NA	152341588	152342425	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_152341879_152342049
transcript_62798.known	chrX	+	788	4	FSM	ENSMUSG00000086316.9	ENSMUST00000140575.8	788	4	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_3	8.37987005998436	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATTAATGTCCAAATAAATTT	NA	False	NA	9	True	ATTAAA	-14	NA	152506585	152524260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_152506934_152508700_152508838_152511857_152511936_152524035
transcript_6280.known	chr11	-	1957	10	FSM	ENSMUSG00000020432.13	ENSMUST00000109988.2	1957	10	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_9	47.4250545858319	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGACGTAGAGTCCTGGT	NA	False	NA	-11	True	ATTAAA	-17	NA	3881804	3867191	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_3867710_3869289_3869406_3872010_3872177_3873395_3873583_3873701_3873875_3874940_3875103_3875999_3876170_3877389_3877583_3881392_3881585_3881724
transcript_62800.known	chrX	+	775	3	FSM	ENSMUSG00000086316.9	ENSMUST00000149514.8	775	3	0	0	0	0	multi-exon	FALSE	canonical	3	163	junction_1	3	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATTTGTGACCCCTTTCTT	NA	False	NA	NA	False	AGTAAA	-20	NA	152506622	152512184	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_152506934_152508700_152508838_152511857
transcript_62802.known	chrX	+	1346	3	FSM	ENSMUSG00000086316.9	ENSMUST00000185492.7	1346	3	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_2	49	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCATTCCAGAGTTATAC	NA	False	NA	NA	False	AATATA	-13	NA	152506605	152524916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_152506934_152508700_152508838_152524035
transcript_62804.known	chrX	+	536	3	FSM	ENSMUSG00000046550.9	ENSMUST00000123264.2	536	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	2	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTGTCGTTCTCTGGAGTC	NA	False	NA	NA	False	TTTAAA	-21	NA	152615236	152616519	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_152615326_152615430_152615545_152616186
transcript_62805.known	chrX	+	1309	2	FSM	ENSMUSG00000046550.9	ENSMUST00000049999.9	1309	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TTAGTCATCTAAAAAATTGA	NA	False	NA	NA	False	AATAAA	-19	NA	152615288	152617239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_152615545_152616186
transcript_62807.nnic	chrX	-	1724	4	NNC	ENSMUSG00000063728.11	novel	1212	3	NA	NA	-1668	358	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_2	3.55902608401044	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTCTTCACTGCTTCCCTG	NA	False	NA	NA	False	NA	NA	NA	153720651	153706649	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_153708120_153709022_153709112_153718972_153719075_153720588
transcript_62809.nnic	chrX	-	1771	5	Genic_Genomic	ENSMUSG00000094196.3	novel	963	1	NA	NA	-9523	377	multi-exon	FALSE	canonical	3	11	junction_3	4.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCTTTAATCTCTTGTTGT	NA	False	NA	NA	False	ATTAAA	-19	NA	153742024	153731161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chrX_-_153732567_153733511_153733601_153740339_153740441_153741158_153741264_153741953
transcript_6281.known	chr11	+	2911	15	FSM	ENSMUSG00000020430.13	ENSMUST00000020705.5	2911	15	0	0	0	0	multi-exon	FALSE	canonical	3	864	junction_12	97.3847042006336	740	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATTGCTGCCCATTATTG	NA	False	NA	NA	False	NA	NA	NA	3913974	3930004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_3914061_3918262_3918343_3919432_3919587_3920624_3920735_3923196_3923369_3923448_3923539_3925528_3925646_3925739_3925815_3926034_3926122_3926287_3926419_3926771_3926898_3927015_3927201_3927625_3927784_3927870_3928033_3928826
transcript_62810.nnic	chrX	-	1947	5	NNC	ENSMUSG00000079350.3	novel	1646	4	NA	NA	-197	0	at_least_one_novel_splicesite	FALSE	canonical	3	21	junction_3	13.4233937586588	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTCTTTAGTTTCTTG	NA	False	NA	-5	True	AATAAA	-16	NA	153779043	153768770	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_153770173_153771107_153771197_153777179_153777280_153777995_153778100_153778791
transcript_62812.known	chrX	-	1646	4	FSM	ENSMUSG00000079350.3	ENSMUST00000070141.7	1646	4	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_3	17.6823829464998	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAAACTCTTTAGTTTCTTG	NA	False	NA	-5	True	AATAAA	-16	NA	153778846	153768770	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_153770173_153771107_153771197_153777179_153777280_153778791
transcript_62814.nnic	chrX	-	1773	5	NNC	ENSMUSG00000079349.10	novel	1360	4	NA	NA	-25	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_3	19.2272592950738	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTTTAGTTTCTTTTT	NA	False	NA	0	True	AATAAA	-18	NA	153846166	153836056	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_153837456_153838390_153838480_153844474_153844576_153845292_153845397_153846086
transcript_62815.nnic	chrX	-	1713	4	NNC	ENSMUSG00000055746.10	novel	1685	4	NA	NA	-31	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	14.613540144522	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGCATTTGTAACACTA	NA	False	NA	NA	False	ATTAAA	-19	NA	153816319	153810196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_-_153811648_153812583_153812673_153814604_153814707_153816248
transcript_62816.known	chrX	-	1685	4	FSM	ENSMUSG00000055746.10	ENSMUST00000069477.8	1685	4	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_2	9.56846672960488	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAATGGCATTTGTAACACTA	NA	False	NA	NA	False	ATTAAA	-19	NA	153816288	153810196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_153811648_153812583_153812673_153815451_153815557_153816248
transcript_62820.known	chrX	-	1360	4	FSM	ENSMUSG00000079349.10	ENSMUST00000069556.4	1360	4	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	7.03957069398096	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACACATTCAATTTTCGCTT	NA	False	NA	NA	False	NA	NA	NA	153846141	153836340	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_153837456_153838390_153838480_153844474_153844576_153846086
transcript_62823.known	chrX	-	1563	3	FSM	ENSMUSG00000079349.10	ENSMUST00000169540.8	1563	3	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	8.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACTGTTTAGTTTCTTTTT	NA	False	NA	0	True	AATAAA	-18	NA	153844549	153836056	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_153837456_153838390_153838480_153844474
transcript_62824.known	chrX	-	1272	7	FSM	ENSMUSG00000025283.16	ENSMUST00000152463.8	1272	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_4	540.496993516153	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGCATTTTTACTAGT	NA	False	NA	-7	True	AATAAA	-24	NA	153999445	153996127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998116_153998227_153998596_153998681_153998780_153998833_153999098
transcript_62827.known	chrX	-	1162	6	FSM	ENSMUSG00000025283.16	ENSMUST00000026318.15	1162	6	0	0	0	0	multi-exon	FALSE	canonical	3	1003	junction_1	103.839106313566	1140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGAGCATTTTTACTAGT	NA	False	NA	-7	True	AATAAA	-24	NA	153999445	153996127	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_153996664_153996892_153996934_153997028_153997131_153998596_153998681_153998780_153998833_153999098
transcript_62830.known	chrX	-	896	6	FSM	ENSMUSG00000025283.16	ENSMUST00000112551.4	896	6	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_2	481.393144944961	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTGGAGGCAGAATTCTTGAA	NA	False	NA	NA	False	TTTAAA	-21	NA	153999341	153996310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_153996664_153996892_153996955_153997028_153997131_153998596_153998681_153998780_153998833_153999098
transcript_62840.known	chrX	+	1740	16	FSM	ENSMUSG00000025287.16	ENSMUST00000131332.8	1740	16	0	0	0	0	multi-exon	FALSE	canonical	2	22	junction_1	338.793873747577	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTACGATTGTGAGTCTCC	NA	False	NA	18	True	AATAAA	-12	NA	154045500	154080642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_154045671_154047031_154047090_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
transcript_62848.known	chrX	+	1752	15	FSM	ENSMUSG00000025287.16	ENSMUST00000026324.10	1752	15	0	0	0	0	multi-exon	FALSE	canonical	2	666	junction_2	111.349262068796	915	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGAGTCTCCCATGTTGT	NA	False	NA	26	True	AATAAA	-20	NA	154045438	154080650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_154045671_154052654_154052750_154054947_154054994_154055967_154056139_154056387_154056426_154064606_154064691_154065046_154065151_154069284_154069362_154076904_154076973_154078158_154078271_154078417_154078509_154078678_154078765_154079320_154079409_154079576_154079728_154080341
transcript_62864.known	chrX	-	990	7	FSM	ENSMUSG00000025289.16	ENSMUST00000026328.11	990	7	0	0	0	0	multi-exon	FALSE	canonical	3	951	junction_2	71.6488349909163	744	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCGTTTGCCATTGTAATTT	NA	False	NA	-1	True	AATAAA	-22	NA	154121463	154106913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_154107025_154109590_154109626_154111441_154111573_154113298_154113422_154115351_154115469_154117833_154117952_154121108
transcript_62866.known	chrX	-	3717	11	FSM	ENSMUSG00000071708.12	ENSMUST00000112529.8	3717	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	141.867156170835	420	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATCCCGTCTCCATTATGC	NA	False	NA	-4	True	AATAAA	-11	NA	156275283	156226850	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_156229173_156230350_156230467_156237829_156237910_156238989_156239105_156243322_156243413_156244171_156244327_156244956_156245133_156248819_156248885_156249393_156249488_156252983_156253105_156274900
transcript_62875.known	chrX	-	4797	11	FSM	ENSMUSG00000046873.19	ENSMUST00000058098.15	4797	11	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_9	30.3809150619266	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATCTTCTGTATCATATTT	NA	False	NA	-5	True	AATAAA	-35	NA	156381711	156330819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_156334147_156335911_156335988_156337878_156338075_156338592_156338688_156341880_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
transcript_62883.nic	chrX	-	1211	7	ISM	ENSMUSG00000046873.19	ENSMUST00000058098.15	4797	11	24	10929	-12	7193	5prime_fragment	FALSE	canonical	3	154	junction_5	38.2771327150936	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTATTCTTGGTATGTTGG	NA	False	NA	NA	False	AATAAA	-19	NA	156381687	156341748	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_156342062_156344378_156344498_156355854_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
transcript_62887.known	chrX	-	2379	5	FSM	ENSMUSG00000046873.19	ENSMUST00000139786.8	2379	5	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_3	45.1386752131695	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAGAAAAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	156381647	156354214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_156355983_156359079_156359184_156374349_156374552_156376720_156376870_156381491
transcript_62888.known	chrX	-	529	4	FSM	ENSMUSG00000046873.19	ENSMUST00000149249.2	529	4	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_3	71.2242156073964	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTATTTATCCTGGGGCAT	NA	False	NA	NA	False	NA	NA	NA	156381675	156355943	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_156355983_156359079_156359184_156374349_156374552_156381491
transcript_62889.known	chrX	-	796	3	FSM	ENSMUSG00000046873.19	ENSMUST00000152826.3	796	3	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_1	4	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATTAGCAGAAATTGTCACA	NA	False	NA	NA	False	NA	NA	NA	156381639	156374052	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_156374552_156376720_156376870_156381491
transcript_62890.known	chrX	-	2867	1	FSM	ENSMUSG00000091736.4	ENSMUST00000065806.5	2867	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAATAGCTTGCTTGTGTG	NA	False	NA	NA	False	AATAAA	-16	NA	156351981	156349114	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_156349100_156352000
transcript_62892.nnic	chrX	+	2764	22	NNC	ENSMUSG00000031309.16	novel	755	2	NA	NA	-119	298	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_1	12.7339779727836	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACCTGGATTAACAGTATTG	NA	False	NA	NA	False	ATTAAA	-16	NA	158038658	158147034	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_158038716_158068261_158068319_158094459_158094577_158100916_158100999_158109836_158109918_158110767_158110848_158111366_158111474_158113553_158113592_158113782_158113926_158115146_158115218_158119690_158119780_158119958_158120024_158120181_158120285_158120913_158121039_158125580_158125707_158128335_158128426_158130011_158130171_158132247_158132410_158134359_158134437_158135311_158135430_158145637_158145779_158146358
transcript_62893.known	chrX	+	7244	22	FSM	ENSMUSG00000031309.16	ENSMUST00000033671.13	7244	22	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	12.5162932360936	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCGTTTCTTTTTATCCG	NA	False	NA	NA	False	AATAAA	-16	NA	158038853	158151240	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_158039185_158068261_158068319_158094459_158094577_158100916_158100999_158109836_158109918_158110767_158110848_158111366_158111474_158113553_158113592_158113782_158113926_158115146_158115218_158119690_158119780_158119958_158120024_158120181_158120285_158120913_158121039_158125580_158125707_158128335_158128426_158130011_158130171_158132247_158132410_158134359_158134437_158135311_158135430_158145637_158145779_158146358
transcript_62895.known	chrX	+	5172	7	FSM	ENSMUSG00000067194.7	ENSMUST00000087143.7	5172	7	0	0	0	0	multi-exon	FALSE	canonical	3	2276	junction_6	179.511064344854	115	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCTTAAGTTGTGGCCAAC	5347	False	NA	NA	False	AATATA	-11	NA	158155173	158172924	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_158155412_158159376_158159461_158160454_158160559_158161534_158161586_158162725_158162808_158165683_158165776_158168403
transcript_629.known	chr1	+	587	4	FSM	ENSMUSG00000026087.12	ENSMUST00000195373.2	587	4	0	0	0	0	multi-exon	FALSE	canonical	3	1006	junction_1	22.6421435969889	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCGCTGATGGAGTCCTG	NA	False	NA	20	True	ATTAAA	-20	NA	37933015	37937419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_37933097_37934410_37934492_37936768_37936916_37937141
transcript_62903.nic	chrX	+	1550	10	NIC	ENSMUSG00000041020.15	novel	3670	17	NA	NA	102	-1312	combination_of_known_junctions	FALSE	canonical	1	49	junction_5	37.9326889224701	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAGAAGGAAAAAGCCAT	NA	False	NA	NA	False	NA	NA	NA	158197669	158272462	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_158197889_158226918_158226997_158228930_158229095_158242373_158242480_158245109_158245221_158252958_158253090_158255820_158255946_158265073_158265373_158265955_158266083_158272272
transcript_62910.nnic	chrX	+	3337	13	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	-46	-14	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_9	196.729703880448	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTACCTGGCAGTTGGT	NA	False	NA	9	True	AATAAA	-22	NA	158315617	158376063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349452_158350914_158351011_158357940_158358094_158374327_158374354_158375066
transcript_62911.nnic	chrX	+	3424	13	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	-46	-14	at_least_one_novel_splicesite	FALSE	canonical	3	151	junction_11	167.554634539172	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTTACCTGGCAGTTGGT	NA	False	NA	9	True	AATAAA	-22	NA	158315617	158376063	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158374327_158374354_158375066
transcript_62912.nic	chrX	+	3741	12	NIC	ENSMUSG00000044150.13	novel	578	4	NA	NA	-26	0	intron_retention	TRUE	canonical	3	25	junction_1	179.30540915451	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTGAGAGCATTCTTTG	NA	False	NA	23	True	AATAAA	-36	NA	158309657	158376077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_158310201_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158375066
transcript_62914.nnic	chrX	+	3325	12	NNC	ENSMUSG00000044150.13	novel	3366	12	NA	NA	-46	0	at_least_one_novel_splicesite	FALSE	canonical	3	82	junction_9	160.572169094159	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTGAGAGCATTCTTTG	NA	False	NA	23	True	AATAAA	-36	NA	158315617	158376077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349452_158350914_158351011_158357940_158358094_158375066
transcript_62916.known	chrX	+	3366	12	FSM	ENSMUSG00000044150.13	ENSMUST00000112464.8	3366	12	0	0	0	0	multi-exon	FALSE	canonical	3	339	junction_9	109.675027103931	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTGGTGAGAGCATTCTTTG	NA	False	NA	23	True	AATAAA	-36	NA	158315663	158376077	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423_158349539_158350914_158351011_158357940_158358094_158375066
transcript_62921.nic	chrX	+	2218	9	ISM	ENSMUSG00000044150.13	ENSMUST00000112464.8	3366	12	-46	26473	-46	-8489	5prime_fragment	FALSE	canonical	3	412	junction_8	92.8372231381357	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGCTTGTAACTTCATTATG	NA	False	NA	NA	False	TATAAA	-20	NA	158315617	158349604	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833_158342950_158349423
transcript_62924.nic	chrX	+	4047	8	ISM	ENSMUSG00000044150.13	ENSMUST00000057180.13	2513	11	-97	30431	-46	10074	5prime_fragment	FALSE	canonical	3	421	junction_5	81.1237402027902	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTGTGTGCAAGTTTTTG	NA	False	NA	11	True	NA	NA	NA	158315617	158344959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239_158336891_158338470_158338647_158340438_158340554_158341330_158341395_158342833
transcript_62925.nic	chrX	+	1408	4	ISM	ENSMUSG00000044150.13	ENSMUST00000057180.13	2513	11	-97	38658	-46	1847	5prime_fragment	FALSE	canonical	3	487	junction_1	64.3238334954903	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TGGAAGAAAAAAATTAGTAA	NA	False	NA	11	True	TATAAA	-32	NA	158315617	158336732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_+_158315832_158331234_158331312_158334746_158335371_158336239
transcript_62927.known	chrX	+	4348	29	FSM	ENSMUSG00000031303.9	ENSMUST00000033665.9	4348	29	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	11.3624762858691	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGAAGTTCCCTTATTTTGA	NA	False	NA	13	True	ATTAAA	-21	NA	158771428	158906347	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_158771802_158784900_158785041_158787158_158787183_158823985_158824180_158827056_158827226_158829612_158829720_158855833_158856005_158858590_158858704_158859124_158859285_158862909_158863061_158864780_158864889_158866859_158866910_158869313_158869410_158872799_158872888_158874576_158874711_158877291_158877420_158880972_158881104_158881316_158881423_158895401_158895560_158898054_158898239_158898880_158899047_158899514_158899690_158900650_158900837_158901536_158901643_158902505_158902720_158904641_158904755_158905357_158905459_158905529_158905607_158905922
transcript_62931.known	chrX	-	2848	11	FSM	ENSMUSG00000031299.11	ENSMUST00000033662.9	2848	11	0	0	0	0	multi-exon	FALSE	canonical	3	1235	junction_1	109.21011857882	325	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAGTTCTTGAGTTCCCTTTC	NA	False	NA	-1	True	ATTAAA	-24	NA	158921409	158905204	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_158906944_158907514_158907624_158909189_158909258_158910286_158910359_158910568_158910725_158911460_158911554_158912405_158912498_158913104_158913232_158915064_158915239_158916168_158916229_158921251
transcript_62933.known	chrX	-	457	2	FSM	ENSMUSG00000031299.11	ENSMUST00000127535.2	457	2	0	0	0	0	multi-exon	FALSE	canonical	1	6	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTAGAATCAAAGTTTCTATA	NA	False	NA	NA	False	AATAAA	-10	NA	158921352	158919892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_158920249_158921251
transcript_62934.known	chrX	+	4133	33	FSM	ENSMUSG00000031295.14	ENSMUST00000033652.9	4133	33	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_12	13.3855098894289	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTCATTTGTAGACTCAT	NA	False	NA	7	True	CATAAA	-18	NA	159285429	159374137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_159285901_159306267_159306427_159310725_159310774_159311842_159312012_159312910_159312994_159314103_159314185_159315974_159316074_159324364_159324512_159326629_159326684_159327207_159327331_159332170_159332267_159335708_159335817_159337296_159337376_159340681_159340817_159341462_159341573_159342726_159342872_159343095_159343175_159345718_159345889_159347181_159347356_159357638_159357728_159358775_159358910_159359597_159359755_159360491_159360572_159360763_159360843_159360943_159361074_159361588_159361691_159364156_159364276_159365962_159365993_159367459_159367514_159369774_159369946_159371960_159372015_159373163_159373365_159373934
transcript_62950.nnic	chrX	+	3234	26	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	-5649	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_13	113.395590743203	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATGTCTTCAGTTATT	NA	False	NA	NA	False	ATTAAA	-14	NA	159940096	160039896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_159940262_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160004661_160004746_160006152_160006237_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
transcript_62961.nnic	chrX	+	3087	24	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	14606	0	at_least_one_novel_splicesite	TRUE	canonical	3	8	junction_14	106.161164352296	3	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTTATGTCTTCAGTTATT	4637	False	NA	NA	False	ATTAAA	-14	NA	159921869	160039896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_159922056_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
transcript_62962.nnic	chrX	+	4400	24	NNC	ENSMUSG00000000037.18	novel	517	3	NA	NA	14606	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_14	106.161164352296	14	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTAAGCCTTGGATGTTATT	4637	False	NA	19	True	AATAAA	-28	NA	159921869	160041209	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_159922056_159954485_159954532_159960242_159960314_159961032_159961268_159970259_159970349_159975199_159975444_159985009_159985094_159992190_159992266_159992604_159992680_159996236_159996321_159998175_159998260_160007456_160007541_160008872_160008957_160010368_160010453_160011672_160011757_160013086_160013171_160014395_160014480_160017608_160017693_160020475_160020754_160022745_160022861_160024983_160025188_160026361_160026545_160029252_160029364_160039561
transcript_62975.known	chrX	+	2244	12	FSM	ENSMUSG00000031353.14	ENSMUST00000033720.12	2244	12	0	0	0	0	multi-exon	FALSE	canonical	3	2711	junction_3	173.446540695797	3013	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAACTATATCTGCATCATTT	NA	False	NA	NA	False	AATAAA	-17	NA	161543397	161562088	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
transcript_62979.known	chrX	+	1862	12	FSM	ENSMUSG00000031353.14	ENSMUST00000112327.8	1862	12	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_3	868.427533053443	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTCTTGATTGGCTTTGCAGA	NA	False	NA	-32	True	NA	NA	NA	161543416	161561752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552786_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731_161558790_161560767_161560879_161561343
transcript_62988.known	chrX	-	3715	11	FSM	ENSMUSG00000038344.15	ENSMUST00000112316.9	3715	11	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_9	58.6501491899211	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTTCTGTGTATTATT	NA	False	NA	NA	False	AGTAAA	-17	NA	161612450	161561914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_161564415_161565224_161565321_161567317_161567411_161569612_161569688_161570554_161570675_161573607_161573803_161580635_161580807_161590480_161590573_161594287_161594385_161594531_161594592_161612234
transcript_62995.known	chrX	+	1430	10	FSM	ENSMUSG00000031353.14	ENSMUST00000112326.8	1430	10	0	0	0	0	multi-exon	FALSE	canonical	3	2711	junction_3	178.323675750959	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	161543457	161558891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_161543704_161544570_161544716_161551847_161551994_161552759_161552934_161554048_161554165_161555200_161555362_161556191_161556319_161556436_161556515_161557548_161557626_161558731
transcript_62996.known	chrX	-	3862	10	FSM	ENSMUSG00000038344.15	ENSMUST00000041370.11	3862	10	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_4	53.4535681747934	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACAGCTTCTGTGTATTATT	NA	False	NA	NA	False	AGTAAA	-17	NA	161612450	161561914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_161564415_161565224_161565321_161567317_161567411_161569612_161569688_161570554_161570675_161573607_161573803_161580635_161580807_161590480_161590573_161594287_161594592_161612234
transcript_630.known	chr1	-	3381	5	FSM	ENSMUSG00000058407.13	ENSMUST00000162031.8	3381	5	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	112.632976965008	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCCGTTCTCTGTTTGATGG	NA	False	NA	NA	False	TATAAA	-17	NA	38036396	38024269	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036189
transcript_63005.known	chrX	-	2525	6	FSM	ENSMUSG00000038344.15	ENSMUST00000112315.2	2525	6	0	0	0	0	multi-exon	FALSE	canonical	3	54	junction_4	64.8382603097893	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTTTATGTCTCATCTCCA	NA	False	NA	-7	True	AATAAA	-16	NA	161612450	161571913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_161573803_161580635_161580807_161590480_161590573_161594287_161594385_161594531_161594592_161612234
transcript_6301.known	chr11	-	1411	4	FSM	ENSMUSG00000004748.6	ENSMUST00000004868.6	1411	4	0	0	0	0	multi-exon	FALSE	canonical	3	154	junction_3	5.18544972870135	126	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTTCATTTCCTCTT	NA	False	NA	1	True	AATAAA	-17	NA	4045445	4041479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_4042300_4043800_4044034_4044388_4044517_4045215
transcript_63013.known	chrX	-	2087	9	FSM	ENSMUSG00000031357.4	ENSMUST00000033723.4	2087	9	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	15.2105021284637	91	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCCTTTATAGAATGGTCTT	NA	False	NA	NA	False	TATAAA	-15	NA	161671443	161640052	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_161641005_161642294_161642443_161642868_161642928_161646055_161646205_161655510_161655651_161661326_161661401_161665675_161665743_161665963_161666083_161671064
transcript_6302.nnic	chr11	-	1350	4	NNC	ENSMUSG00000004748.6	novel	1411	4	NA	NA	48	0	at_least_one_novel_splicesite	FALSE	canonical	3	11	junction_3	72.5962962018189	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTCCTTTTCATTTCCTCTT	NA	False	NA	1	True	AATAAA	-17	NA	4045397	4041479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_4042300_4043800_4044034_4044388_4044517_4045228
transcript_63020.nic	chrX	+	2215	19	NIC	ENSMUSG00000031360.15	novel	1665	15	NA	NA	-10	0	combination_of_known_junctions	TRUE	canonical	2	23	junction_1	48.2283982220199	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGGGCCCGGCAGAAAGT	NA	False	NA	11	True	ATTAAA	-17	NA	161684223	161814315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_161684391_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
transcript_63021.known	chrX	+	3353	19	FSM	ENSMUSG00000031360.15	ENSMUST00000033727.14	3353	19	0	0	0	0	multi-exon	FALSE	canonical	2	133	junction_1	30.7828415409191	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATGGGCAGACTTGTACTT	NA	False	NA	NA	False	AATAAA	-22	NA	161684627	161815504	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_161684744_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
transcript_63022.nnic	chrX	+	2197	19	NNC	ENSMUSG00000031360.15	novel	3289	19	NA	NA	-45	0	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_1	50.5288390945895	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCGGGCCCGGCAGAAAGT	NA	False	NA	11	True	ATTAAA	-17	NA	161684555	161814315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_161684705_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
transcript_63023.known	chrX	+	3099	19	FSM	ENSMUSG00000031360.15	ENSMUST00000112301.8	3099	19	0	0	0	0	multi-exon	FALSE	canonical	2	41	junction_1	44.8724185955837	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTATGCAGTGTCATTTAT	NA	False	NA	NA	False	NA	NA	NA	161684865	161815321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_161684911_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
transcript_63024.known	chrX	+	3289	19	FSM	ENSMUSG00000031360.15	ENSMUST00000112303.8	3289	19	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_1	51.1108695646466	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGTATGCAGTGTCATTTAT	NA	False	NA	NA	False	NA	NA	NA	161684600	161815321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_161684836_161686429_161686635_161693004_161693176_161696203_161696305_161704194_161704312_161704445_161704530_161705385_161705467_161710400_161710553_161714622_161714756_161717282_161717372_161719706_161719802_161724642_161724706_161724796_161724841_161758178_161758276_161779700_161779757_161783057_161783155_161794057_161794203_161812762_161812875_161814109
transcript_63029.known	chrX	+	3199	5	FSM	ENSMUSG00000031367.16	ENSMUST00000112294.9	3199	5	0	0	0	0	multi-exon	FALSE	canonical	3	133	junction_1	15.8192920195564	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTCATGTGAATGAC	NA	False	NA	-2	True	AATAAA	-13	NA	162692140	162712542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162709898
transcript_63030.nnic	chrX	+	2122	5	NNC	ENSMUSG00000031367.16	novel	3199	5	NA	NA	-43	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	59.8351903147303	30	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTGTCTCATGTGAATGAC	NA	False	NA	-2	True	AATAAA	-13	NA	162692094	162712542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162711021
transcript_63031.known	chrX	+	1785	5	FSM	ENSMUSG00000031367.16	ENSMUST00000033734.14	1785	5	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_4	61.936963923008	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACACTGTGGTGTGCTTTTC	NA	False	NA	2	True	AATAAA	-9	NA	162692137	162716355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_162692270_162694324_162694504_162699470_162699580_162700701_162700840_162715128
transcript_63033.known	chrX	-	2735	11	FSM	ENSMUSG00000031370.13	ENSMUST00000112289.9	2735	11	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	287.175643117588	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTCTTATTTCTTAGAGTAA	NA	False	NA	NA	False	AATAGA	-38	NA	162741585	162718438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_162719962_162722301_162722412_162723114_162723171_162726095_162726310_162732255_162732375_162733182_162733222_162736565_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269
transcript_63042.known	chrX	-	460	6	FSM	ENSMUSG00000031370.13	ENSMUST00000147928.8	460	6	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_5	268.200372855818	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATGGGAAGAACAGCAGAGAA	NA	False	NA	-16	True	TTTAAA	-19	NA	162741548	162736635	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741522
transcript_63043.nic	chrX	-	1587	6	NIC	ENSMUSG00000031370.13	novel	460	6	NA	NA	-52	978	combination_of_known_junctions	FALSE	canonical	3	185	junction_5	227.558695724861	131	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGCCTTGAAGATATTTT	NA	False	NA	-10	True	AATATA	-15	NA	162741709	162735608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741583
transcript_63048.nic	chrX	-	1275	6	NIC	ENSMUSG00000031370.13	novel	460	6	NA	NA	-52	666	combination_of_known_junctions	FALSE	canonical	3	185	junction_5	227.558695724861	107	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGGTATCCTGTCTAACTT	NA	False	NA	-15	True	ATTAAA	-28	NA	162741709	162735920	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269_162741416_162741583
transcript_63051.known	chrX	-	3867	5	FSM	ENSMUSG00000031370.13	ENSMUST00000090840.10	3867	5	0	0	0	0	multi-exon	FALSE	canonical	3	635	junction_1	78.6924392810389	143	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATCTTTTAAAAACTTTTTA	NA	False	NA	NA	False	AATAAA	-15	NA	162741594	162733381	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_162736653_162737369_162737479_162739467_162739550_162740911_162740992_162741269
transcript_63056.nic	chrX	-	677	4	ISM	ENSMUSG00000031370.13	ENSMUST00000147928.8	460	6	-173	780	-64	-780	intron_retention	FALSE	canonical	3	708	junction_2	67.6477806156434	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAAAAAGAAGAGGAAG	NA	False	NA	NA	False	AAGAAA	-26	NA	162741721	162737415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_162737479_162739467_162739550_162740911_162740992_162741269
transcript_63057.known	chrX	-	1783	4	FSM	ENSMUSG00000040749.12	ENSMUST00000037928.9	1783	4	0	0	0	0	multi-exon	FALSE	canonical	3	101	junction_3	206.108385726216	101	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCAGGTTTTTCTCACTT	NA	False	NA	-18	True	AATAAA	-15	NA	162859117	162853700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859010
transcript_63058.known	chrX	-	1712	4	FSM	ENSMUSG00000040749.12	ENSMUST00000071667.9	1712	4	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_3	112.11402925395	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTCAGGTTTTTCTCACTT	NA	False	NA	-18	True	AATAAA	-15	NA	162859146	162853700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859110
transcript_63059.known	chrX	-	803	4	FSM	ENSMUSG00000040749.12	ENSMUST00000134272.2	803	4	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_3	219.75794765049	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCAAACTTACATGTTGTCC	NA	False	NA	NA	False	NA	NA	NA	162859489	162854880	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_162855224_162856285_162856347_162858573_162858666_162859182
transcript_6306.known	chr11	-	2631	12	FSM	ENSMUSG00000003585.14	ENSMUST00000003681.8	2631	12	0	0	0	0	multi-exon	TRUE	canonical	3	7	junction_11	8.90816321700644	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAGAATTCATTGCCCAT	NA	False	NA	0	True	AATAAA	-22	NA	4068831	4047038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_4048436_4053387_4053558_4053673_4053814_4053894_4054002_4058496_4058581_4058963_4059025_4059148_4059245_4061036_4061226_4061442_4061503_4061893_4061938_4066680_4066757_4068624
transcript_63068.known	chrX	+	1599	10	FSM	ENSMUSG00000031379.14	ENSMUST00000033749.9	1599	10	0	0	0	0	multi-exon	FALSE	canonical	3	253	junction_3	17.8270151493682	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATGTGCTTTTTTATATG	NA	False	NA	NA	False	TATAAA	-15	NA	163052426	163156007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
transcript_63070.nnic	chrX	+	1219	9	NIC	ENSMUSG00000031379.14	novel	1599	10	NA	NA	27	-224	combination_of_known_splicesites	FALSE	canonical	3	28	junction_1	80.2507788124203	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTTTTTGTAATGAAT	NA	False	NA	NA	False	AATAAA	-23	NA	163052453	163155783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_163052674_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163125469_163125515_163141143_163141227_163152041_163152109_163155448
transcript_63072.nnic	chrX	+	1279	9	NIC	ENSMUSG00000031379.14	novel	1599	10	NA	NA	-29	-224	combination_of_known_splicesites	FALSE	canonical	3	32	junction_6	81.4048524352203	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTTTTTTGTAATGAAT	NA	False	NA	NA	False	AATAAA	-23	NA	163052477	163155783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chrX_+_163052674_163054598_163054728_163063124_163063218_163078910_163078995_163083219_163083427_163113010_163113096_163141143_163141227_163152041_163152109_163155448
transcript_6308.nic	chr11	-	2604	11	NIC	ENSMUSG00000003585.14	novel	2631	12	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_10	5.85149553533112	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGCAGAATTCATTGCCCAT	NA	False	NA	0	True	AATAAA	-22	NA	4073421	4047038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_4048436_4053387_4053558_4053673_4053814_4053894_4054002_4058496_4058581_4058963_4059025_4059148_4059245_4061036_4061226_4061442_4061503_4061893_4061938_4073165
transcript_63083.known	chrX	+	831	6	FSM	ENSMUSG00000031381.17	ENSMUST00000208261.2	831	6	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_2	93.3967879533338	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAAGATATCCCAAAGCAG	NA	False	NA	NA	False	AAGAAA	-13	NA	163202802	163214868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_163202837_163205579_163205661_163210927_163211061_163211535_163211669_163211806_163212014_163214625
transcript_63084.known	chrX	+	3212	6	FSM	ENSMUSG00000031381.17	ENSMUST00000112257.10	3212	6	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	78.77715404862	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTTATTTTTGTCTCAGTTT	NA	False	NA	23	True	AATAAA	-23	NA	163202782	163216907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_163202837_163205579_163205983_163210927_163211061_163211535_163211669_163211806_163212014_163214625
transcript_63086.known	chrX	+	3594	6	FSM	ENSMUSG00000031381.17	ENSMUST00000033754.15	3594	6	0	0	0	0	multi-exon	FALSE	canonical	3	160	junction_2	38.4052079801685	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTCTCAGTTTGTCTT	NA	False	NA	28	True	AATAAA	-28	NA	163202782	163216912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_163202837_163205579_163206360_163210927_163211061_163211535_163211669_163211806_163212014_163214625
transcript_63089.known	chrX	+	3903	6	FSM	ENSMUSG00000031381.17	ENSMUST00000151911.9	3903	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	95.333939392013	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTGTCTCAGTTTGTCTT	NA	False	NA	28	True	AATAAA	-28	NA	163202782	163216912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_163202837_163205579_163206669_163210927_163211061_163211535_163211669_163211806_163212014_163214625
transcript_6309.known	chr11	+	1874	9	FSM	ENSMUSG00000003581.15	ENSMUST00000003677.11	1874	9	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_6	6.41165930161608	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATAAATCTGTTAAGACATAA	7850	False	NA	NA	False	AATAAA	-19	NA	4085201	4091172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_4085564_4085813_4085958_4086559_4086632_4086711_4086798_4087211_4087369_4089738_4089859_4089934_4090079_4090297_4090401_4090486
transcript_63092.known	chrX	+	1139	7	FSM	ENSMUSG00000031384.3	ENSMUST00000033756.3	1139	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.25830573921179	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAGACGAGTGGTTTCTTTTG	NA	False	NA	NA	False	AATAAA	-17	NA	163289322	163322748	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_163289583_163297924_163298005_163312403_163312512_163314577_163314729_163316452_163316588_163318365_163318558_163322535
transcript_63093.known	chrX	-	2479	15	FSM	ENSMUSG00000061778.11	ENSMUST00000112247.9	2479	15	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	17.508598470699	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACGTTCTGGTGCTTTTCAT	NA	False	NA	NA	False	TATAAA	-39	NA	163763293	163719313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_163720300_163722638_163722742_163726426_163726557_163727212_163727310_163727968_163728066_163730237_163730351_163731062_163731240_163734846_163734972_163739474_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
transcript_63094.known	chrX	-	2015	15	FSM	ENSMUSG00000061778.11	ENSMUST00000004715.2	2015	15	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_12	10.321366781822	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAATGTAGTCTGC	NA	False	NA	NA	False	AATACA	-40	NA	163763331	163721204	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_163721689_163722638_163722742_163726426_163726557_163727212_163727310_163727968_163728066_163730237_163730351_163731062_163731240_163734846_163734972_163739474_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
transcript_63097.known	chrX	-	1322	7	FSM	ENSMUSG00000061778.11	ENSMUST00000146813.8	1322	7	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_4	8.95203266799719	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AGATCAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	163763324	163738834	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_163739514_163741751_163741813_163745047_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
transcript_63098.known	chrX	-	1713	5	FSM	ENSMUSG00000061778.11	ENSMUST00000124523.8	1713	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	10.4283268073071	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTAGGCGCCACAGTCACC	NA	False	NA	NA	False	AATAAA	-23	NA	163763321	163743913	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_163745203_163746922_163747010_163747977_163748134_163762989_163763060_163763210
transcript_63099.known	chrX	+	2953	9	FSM	ENSMUSG00000047757.18	ENSMUST00000167446.8	2953	9	0	0	0	0	multi-exon	TRUE	canonical	3	98	junction_5	7.72981241687015	57	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGAGTCTTGTTTTCTTTTAC	NA	False	NA	NA	False	ATTAAA	-17	NA	163763587	163780265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_163763807_163765432_163766450_163769555_163769709_163770700_163770794_163774540_163774685_163775726_163775891_163778339_163778768_163778882_163779118_163779765
transcript_631.known	chr1	-	1699	5	FSM	ENSMUSG00000058407.13	ENSMUST00000195247.6	1699	5	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_4	302.235318088406	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACATGTCTGTTTTTAA	NA	False	NA	-3	True	NA	NA	NA	38036974	38026474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38036244
transcript_63102.nnic	chrX	+	1517	7	NNC	ENSMUSG00000040621.15	novel	1389	5	NA	NA	-76	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	18.3189337389853	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTAAGCCACGTGTCATT	NA	False	NA	NA	False	CATAAA	-2	NA	164953373	164972800	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_164953547_164959840_164959999_164960055_164960076_164961529_164961639_164961787_164961827_164963348_164963806_164972239
transcript_63103.nnic	chrX	+	1408	6	NNC	ENSMUSG00000040621.15	novel	1389	5	NA	NA	-76	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	18.6719040271741	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTTAAGCCACGTGTCATT	NA	False	NA	NA	False	CATAAA	-2	NA	164953373	164972800	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrX_+_164953547_164959840_164959999_164960055_164960076_164961787_164961827_164963348_164963806_164972239
transcript_63107.known	chrX	+	1862	4	FSM	ENSMUSG00000040621.15	ENSMUST00000056410.11	1862	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	17.1529071070248	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGGACTGGATTTGATCTAC	NA	False	NA	NA	False	NA	NA	NA	164953449	164973508	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_164953547_164961787_164961827_164963348_164963806_164972239
transcript_63109.known	chrX	-	4453	23	FSM	ENSMUSG00000040586.9	ENSMUST00000049501.9	4453	23	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_14	25.8655535317559	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAACTCTGACTTCTTTTTT	NA	False	NA	NA	False	AATAAA	-11	NA	165223700	165173028	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_165174055_165174886_165174955_165175413_165175567_165176172_165176328_165183915_165184030_165186537_165186636_165188421_165188579_165188992_165189605_165191584_165191697_165192483_165192615_165193601_165193792_165194811_165194904_165196296_165196371_165197971_165198092_165207971_165208079_165209815_165209990_165210163_165210301_165211523_165211632_165214684_165214716_165214797_165214867_165218330_165218532_165223024_165223124_165223275
transcript_6311.known	chr11	-	5015	12	FSM	ENSMUSG00000051427.15	ENSMUST00000093381.11	5015	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	2.2672661660618	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATTTGTTTTGTGTTTTTGT	8493	False	NA	-4	True	ATTAAA	-16	NA	4110291	4091122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_4093936_4094025_4094115_4094509_4094650_4096233_4096403_4096541_4096719_4097168_4097360_4097699_4097778_4098438_4099085_4099930_4100103_4101671_4101931_4102908_4103057_4110158
transcript_63111.known	chrX	+	1613	5	FSM	ENSMUSG00000079317.11	ENSMUST00000116495.8	1613	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	101.671038157383	83	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATGTGGTCATTTGATGCC	NA	False	NA	9	True	AATAAA	-14	NA	165223569	165236136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_165223836_165229786_165229899_165232783_165232929_165233624_165233711_165235132
transcript_63118.known	chrX	-	1447	3	FSM	ENSMUSG00000079316.11	ENSMUST00000112091.9	1447	3	0	0	0	0	multi-exon	FALSE	canonical	3	555	junction_2	7.5	429	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACGTTGCAATGCTTTTTAA	NA	False	NA	-8	True	ATTAAA	-24	NA	165262863	165240248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_165241340_165245310_165245339_165262535
transcript_63121.known	chrX	-	2704	12	FSM	ENSMUSG00000000402.3	ENSMUST00000000412.3	2704	12	0	0	0	0	multi-exon	FALSE	canonical	2	11	junction_6	3.09892009982897	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACTGTTGAAACACTTTGT	NA	False	NA	NA	False	AATAAA	-15	NA	165368716	165306002	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_165306968_165310309_165310576_165314967_165315070_165319195_165319277_165321409_165321731_165329416_165329540_165331818_165331954_165335420_165335541_165339965_165340086_165345937_165346031_165351404_165351518_165368451
transcript_63122.known	chrX	+	801	1	FSM	ENSMUSG00000067147.8	ENSMUST00000118791.2	801	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	363	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGTACACTGAATTTTCTGT	NA	False	NA	NA	False	AAAAAG	-36	NA	165637206	165638007	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_+_165637200_165638000
transcript_63124.known	chrX	-	864	3	FSM	ENSMUSG00000049775.17	ENSMUST00000112175.2	864	3	0	0	0	0	multi-exon	FALSE	canonical	1	16	junction_2	587.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAAAAGAACTTGCATGTT	NA	False	NA	NA	False	NA	NA	NA	165991823	165990287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_165990532_165990932_165991048_165991318
transcript_63125.known	chrX	-	698	3	FSM	ENSMUSG00000049775.17	ENSMUST00000112176.8	698	3	0	0	0	0	multi-exon	FALSE	canonical	1	19	junction_2	586	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATTGGTGTGTCTGCTTGGT	NA	False	NA	-2	True	AATAAA	-13	NA	165992145	165990090	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_165990532_165990932_165991048_165992003
transcript_63126.known	chrX	-	3699	7	FSM	ENSMUSG00000025742.6	ENSMUST00000026839.5	3699	7	0	0	0	0	multi-exon	TRUE	canonical	3	187	junction_5	11.6535640709422	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTCTTGTCATCCTTTTG	NA	False	NA	-3	True	AATAAA	-24	NA	166165745	166129317	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_166131995_166133510_166133671_166135131_166135306_166146540_166146666_166148114_166148214_166156998_166157183_166165465
transcript_6313.known	chr11	+	4920	16	FSM	ENSMUSG00000002129.12	ENSMUST00000002198.4	4920	16	0	0	0	0	multi-exon	FALSE	canonical	3	694	junction_11	81.820834075979	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGCCCTCCATTATCCTCATC	NA	False	NA	46	True	TATAAA	-15	NA	4110349	4132541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_4110551_4111045_4111168_4116495_4116704_4117632_4117891_4121061_4121137_4123079_4123231_4124031_4124220_4125035_4125154_4125394_4125581_4126269_4126392_4126480_4126727_4127412_4127621_4128070_4128226_4129140_4129243_4129353_4129426_4130033
transcript_63133.known	chrX	-	599	3	FSM	ENSMUSG00000025742.6	ENSMUST00000145456.2	599	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	111.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAAATTTATGTCCTAAGAT	NA	False	NA	NA	False	AATAAA	-25	NA	166165706	166155404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_166155579_166156998_166157183_166165465
transcript_63135.known	chrX	-	2399	13	FSM	ENSMUSG00000031358.18	ENSMUST00000033725.16	2399	13	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_12	12.277746354912	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAGAGGAGTTTTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	167456894	167437112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167455258_167455342_167456723
transcript_63139.nic	chrX	-	2439	12	ISM	ENSMUSG00000031358.18	ENSMUST00000033725.16	2399	13	1342	0	-37	0	3prime_fragment	TRUE	canonical	3	23	junction_11	7.54928708800971	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAGAGGAGTTTTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	167455552	167437112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167455258
transcript_63140.known	chrX	-	2316	12	FSM	ENSMUSG00000031358.18	ENSMUST00000112137.2	2316	12	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_9	6.17646827325928	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAAGCAAGAGGAGTTTTGCT	NA	False	NA	NA	False	AATAAA	-23	NA	167456894	167437112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_167437965_167439958_167440044_167441610_167441711_167445426_167445537_167447038_167447302_167449938_167450098_167451626_167451788_167452485_167452612_167453215_167453308_167454138_167454240_167454790_167454887_167456723
transcript_63144.known	chrX	-	2473	7	FSM	ENSMUSG00000031352.11	ENSMUST00000112115.2	2473	7	0	0	0	0	multi-exon	FALSE	canonical	3	158	junction_6	157.36096155725	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTAGAGTGATTTTTGT	NA	False	NA	0	True	AATAAA	-25	NA	168103290	168094525	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chrX_-_168096019_168096583_168096671_168098597_168098718_168099541_168099691_168099991_168100144_168102433_168102587_168102971
transcript_63149.nnic	chrY	+	993	4	NNC	ENSMUSG00000096768.9	novel	774	4	NA	NA	131	0	intron_retention	FALSE	non_canonical	0	0	junction_1	847.613250381459	26	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATGCAGATGTGTGTGTGT	4256	False	NA	NA	False	AATAAA	-17	NA	90796310	90827733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrY_+_90796500_90796682_90797249_90804564_90804687_90827617
transcript_63151.nnic	chrY	+	907	3	NNC	ENSMUSG00000096768.9	novel	774	4	NA	NA	141	5937	intron_retention	FALSE	canonical	3	68	junction_1	974.5	18	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGATGTGTGTGTGTC	4266	False	NA	NA	False	AATAAA	-18	NA	90796320	90833671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrY_+_90796989_90804564_90804687_90833554
transcript_63153.nnic	chrY	+	1459	3	NNC	ENSMUSG00000096768.9	novel	3347	2	NA	NA	1548	5937	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	1008.5	28	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATGCAGATGTGTGTGTGTC	NA	False	NA	NA	False	AATAAA	-18	NA	90803267	90833671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chrY_+_90804081_90804157_90804687_90833554
transcript_6319.known	chr11	+	1921	9	FSM	ENSMUSG00000034412.14	ENSMUST00000180088.2	1921	9	0	0	0	0	multi-exon	FALSE	canonical	3	291	junction_8	26.2963875846094	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAGAGCTGTGTATAGTTAG	1582	False	NA	21	True	AATAAA	-12	NA	4136821	4165502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_4137100_4155756_4155857_4159925_4160034_4162140_4162248_4162784_4162900_4162977_4163044_4163556_4163747_4163836_4163992_4164700
transcript_6322.nnic	chr11	+	1574	10	NNC	ENSMUSG00000020424.4	novel	1574	9	NA	NA	-53	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	42.6686920815557	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGTGACAGCTGGCG	7065	False	NA	17	True	AATAAA	-25	NA	4168171	4172409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_4168427_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842_4172019_4172071
transcript_6323.nnic	chr11	+	1571	10	NNC	ENSMUSG00000020424.4	novel	1574	9	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_9	54.6479190978796	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGTGACAGCTGGCG	7094	False	NA	17	True	AATAAA	-25	NA	4168200	4172409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_4168453_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842_4172019_4172071
transcript_6326.known	chr11	+	1574	9	FSM	ENSMUSG00000020424.4	ENSMUST00000020699.4	1574	9	0	0	0	0	multi-exon	FALSE	canonical	3	115	junction_3	11.4229757506527	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTCTGAGTGACAGCTGGCG	7118	False	NA	17	True	AATAAA	-25	NA	4168224	4172409	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_4168427_4168947_4169019_4170107_4170293_4170374_4170508_4170682_4170807_4171145_4171260_4171423_4171507_4171600_4171696_4171842
transcript_633.known	chr1	-	1444	5	FSM	ENSMUSG00000058407.13	ENSMUST00000195032.6	1444	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	367.038400579558	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCGTCTGTCTGTCTGT	NA	False	NA	NA	False	TTTAAA	-2	NA	38036697	38026723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_38026861_38029283_38029539_38033072_38033192_38034713_38034923_38035973
transcript_6330.known	chr11	+	2272	3	FSM	ENSMUSG00000058755.4	ENSMUST00000075221.3	2272	3	0	0	0	0	multi-exon	TRUE	canonical	3	46	junction_2	1.5	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCTGGTGTCAGTCTTTTAT	8293	False	NA	5	True	TTTAAA	-18	NA	4186419	4191026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_4186914_4188405_4188543_4189385
transcript_6332.known	chr11	+	773	2	FSM	ENSMUSG00000058755.4	ENSMUST00000131764.2	773	2	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATACCTGAGCCCACACAGAC	8293	False	NA	NA	False	NA	NA	NA	4186419	4189664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_4186914_4189385
transcript_6333.known	chr11	+	3798	3	FSM	ENSMUSG00000034394.15	ENSMUST00000040750.4	3798	3	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTCTGGAGTGCATTGAT	NA	False	NA	NA	False	AATAAA	-18	NA	4217094	4222514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_4217120_4218183_4218366_4218923
transcript_6339.known	chr11	-	1343	11	FSM	ENSMUSG00000020419.12	ENSMUST00000109949.8	1343	11	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_4	69.004347689113	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTTGGGATGGGATGACCT	NA	False	NA	NA	False	NA	NA	NA	4391082	4296382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_4296667_4358589_4358844_4359006_4359159_4362212_4362281_4370703_4370731_4371588_4371610_4374270_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
transcript_6345.nnic	chr11	-	555	6	NNC	ENSMUSG00000020419.12	novel	583	5	NA	NA	-112	0	at_least_one_novel_splicesite	FALSE	canonical	3	47	junction_5	60.0066662963374	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAATTAAAGACTCATCT	NA	False	NA	NA	False	NA	NA	NA	4391217	4374247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876_4390941_4391080
transcript_6346.known	chr11	-	583	5	FSM	ENSMUSG00000020419.12	ENSMUST00000130174.2	583	5	0	0	0	0	multi-exon	FALSE	canonical	3	187	junction_4	8.69985632065266	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAATTAAAGACTCATCT	NA	False	NA	NA	False	NA	NA	NA	4391105	4374247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4390876
transcript_6347.nic	chr11	-	482	5	NIC	ENSMUSG00000020419.12	novel	583	5	NA	NA	-38	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_4	77.2572812102523	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAATTAAAGACTCATCT	NA	False	NA	NA	False	NA	NA	NA	4391143	4374247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4391015
transcript_6348.nnic	chr11	-	489	5	NNC	ENSMUSG00000020419.12	novel	583	5	NA	NA	-110	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_4	75.5326915977446	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCCAAATTAAAGACTCATCT	NA	False	NA	NA	False	NA	NA	NA	4391215	4374247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_4374308_4374755_4374820_4377243_4377386_4385001_4385090_4391080
transcript_6350.known	chr11	+	2650	20	FSM	ENSMUSG00000020412.17	ENSMUST00000070257.14	2650	20	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_9	44.9846388062843	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTCTGTGACATGCTCCAG	NA	False	NA	8	True	AATAAA	-20	NA	4587746	4633385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4606268_4606337_4608214_4608326_4609271_4609385_4614228_4614304_4618314_4618423_4618579_4618649_4618861_4618937_4620275_4620463_4622282_4622498_4623327_4623448_4629251_4629346_4629430_4629553_4630082_4630183_4631438_4631519_4632906
transcript_6355.nnic	chr11	+	661	6	NNC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	-62	-30842	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_5	136.699670811601	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTTTCCTGCTGAGCCATC	NA	False	NA	NA	False	NA	NA	NA	4587684	4602543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599776_4602484
transcript_6356.nnic	chr11	+	811	6	NNC	ENSMUSG00000020412.17	novel	4844	19	NA	NA	-62	-31962	at_least_one_novel_splicesite	FALSE	canonical	3	24	junction_5	127.679912280672	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTAGTAGATATTTATGAATT	NA	False	NA	NA	False	AATAAA	-27	NA	4587684	4601423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_4587823_4590382_4590481_4596561_4596721_4597062_4597234_4599739_4599870_4601308
transcript_6359.known	chr11	-	510	3	FSM	ENSMUSG00000059534.9	ENSMUST00000151559.2	510	3	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_1	31	218	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GACCGGCTTTTGCACGAGTC	NA	False	NA	-8	True	AATAAA	-17	NA	4654334	4651974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_4652221_4653903_4653990_4654156
transcript_6360.known	chr11	-	434	2	FSM	ENSMUSG00000059534.9	ENSMUST00000058407.6	434	2	0	0	0	0	multi-exon	FALSE	canonical	3	8152	junction_1	0	2450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCGGCTTTTGCACGAGTCCT	NA	False	NA	-6	True	AATAAA	-19	NA	4654342	4651972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_4652221_4654156
transcript_6361.known	chr11	-	389	2	FSM	ENSMUSG00000059534.9	ENSMUST00000130236.2	389	2	0	0	0	0	multi-exon	FALSE	canonical	3	506	junction_1	0	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCATGAGACCGGCTTTTGC	NA	False	NA	-15	True	AATAAA	-10	NA	4654053	4651981	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_4652221_4653903
transcript_6364.nnic	chr11	+	823	6	NNC	ENSMUSG00000009076.11	novel	792	6	NA	NA	-62	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	269.190192986297	18	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654615	4687669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_4654713_4672357_4672490_4678584_4678648_4680186_4680268_4682066_4682179_4687331
transcript_6365.known	chr11	+	792	6	FSM	ENSMUSG00000009076.11	ENSMUST00000009220.5	792	6	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_1	205.698225563567	165	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGGCTGGCCTGTCTCTCTTG	NA	False	NA	13	True	TATAAA	-16	NA	4654677	4687669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_4654722_4672357_4672512_4678584_4678648_4680186_4680268_4682066_4682179_4687331
transcript_6375.known	chr11	-	2628	5	FSM	ENSMUSG00000009075.3	ENSMUST00000009219.3	2628	5	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	5.21416340365355	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCAGCCCTGGTTCTGTCT	7564	False	NA	3	True	NA	NA	NA	4696778	4686891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_4688949_4689123_4689278_4689553_4689667_4690368_4690513_4696618
transcript_6376.known	chr11	-	2394	17	FSM	ENSMUSG00000009073.17	ENSMUST00000056290.13	2394	17	0	0	0	0	multi-exon	FALSE	canonical	3	247	junction_1	34.4219565648148	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TCTGGGGGGGGAAAAAAAAA	9396	False	NA	-6	True	NA	NA	NA	4798985	4717664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_4718274_4730577_4730623_4732186_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
transcript_6378.nic	chr11	-	2434	15	ISM	ENSMUSG00000009073.17	ENSMUST00000053079.13	2470	17	-64	9603	-64	0	5prime_fragment	FALSE	canonical	3	334	junction_11	18.239338512889	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGGGGACTTATGCCCAAGG	8952	False	NA	NA	False	AATAAA	-21	NA	4799429	4731936	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_4732353_4734435_4734564_4737443_4737550_4739664_4739883_4741090_4741214_4744411_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
transcript_6385.nnic	chr11	-	2169	11	NNC	ENSMUSG00000009073.17	novel	4720	16	NA	NA	56	-7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	111.144050672989	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATAGTCTTTCGTCGAGTTT	8901	False	NA	-15	True	AATAAA	-14	NA	4799480	4715851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_4716549_4744433_4744526_4744842_4744918_4749860_4749996_4753677_4753754_4756253_4756337_4758256_4758326_4766081_4766166_4768504_4768628_4770367_4770494_4798871
transcript_6388.known	chr11	+	1926	10	FSM	ENSMUSG00000034285.16	ENSMUST00000038570.9	1926	10	0	0	0	0	multi-exon	FALSE	canonical	3	1103	junction_6	68.3294488507475	660	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTTGTGGTGTTGTCTTCA	NA	False	NA	11	True	ATTAAA	-11	NA	4823950	4844200	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_4824104_4833367_4833496_4833725_4833772_4834021_4834117_4838879_4838951_4839096_4839238_4839532_4839565_4839891_4839987_4841402_4841487_4843119
transcript_6406.known	chr11	+	2235	20	FSM	ENSMUSG00000034274.12	ENSMUST00000038237.8	2235	20	0	0	0	0	multi-exon	TRUE	canonical	3	228	junction_1	27.0805712775824	204	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTCTGTTTGTAGCTCCTT	NA	False	NA	21	True	ATTAAA	-18	NA	4845342	4878865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_4845379_4849790_4849907_4851151_4851296_4852085_4852200_4852334_4852433_4854094_4854242_4855640_4855756_4860626_4860760_4862780_4862859_4864269_4864311_4864521_4864622_4865488_4865598_4868123_4868226_4869732_4869830_4870376_4870492_4871921_4872026_4872138_4872227_4874747_4874864_4876045_4876237_4878674
transcript_6409.known	chr11	+	4085	21	FSM	ENSMUSG00000009090.18	ENSMUST00000009234.16	4085	21	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_7	27.5174490096738	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATATGTCTGGCTATGGTCCC	NA	False	NA	NA	False	NA	NA	NA	4936823	4992791	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_4937052_4959529_4959593_4962881_4962988_4965605_4965742_4966605_4966852_4968015_4968207_4969280_4969503_4973096_4973218_4974371_4974468_4975593_4975710_4976244_4976411_4980961_4981061_4981629_4981890_4982417_4982620_4983686_4983843_4987631_4987778_4989124_4989255_4989518_4989604_4990093_4990181_4990266_4990422_4991717
transcript_641.known	chr1	-	2605	4	FSM	ENSMUSG00000058407.13	ENSMUST00000194747.2	2605	4	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	99.432836069826	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATTCACATGTCTGTTTTT	NA	False	NA	-5	True	NA	NA	NA	38036305	38026476	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_38026861_38029283_38029539_38033072_38034923_38036189
transcript_6412.known	chr11	+	1110	3	FSM	ENSMUSG00000034209.5	ENSMUST00000037218.2	1110	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	0.5	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATTTAAGGGTTTCTTGTTC	NA	False	NA	NA	False	AATAAA	-27	NA	5008127	5010385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_5008525_5009432_5009558_5009797
transcript_6419.known	chr11	-	2174	18	FSM	ENSMUSG00000009079.17	ENSMUST00000102930.10	2174	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	1623.90424701095	574	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCTGAGTTTTTTTTTG	NA	False	NA	NA	False	ATTAAA	-16	NA	5049042	5019896	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041459_5041478_5041858_5041983_5043680_5043733_5043868_5043906_5049008
transcript_6424.known	chr11	-	2588	17	FSM	ENSMUSG00000009079.17	ENSMUST00000079949.13	2588	17	0	0	0	0	multi-exon	FALSE	canonical	3	2776	junction_9	796.06296616144	798	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CATCCTCCTCCTCTGTTCTC	NA	False	NA	-13	True	AATAAA	-23	NA	5049266	5019688	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028592_5028919_5028953_5029484_5029520_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
transcript_6439.known	chr11	-	2269	15	FSM	ENSMUSG00000009079.17	ENSMUST00000073308.11	2269	15	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	1383.04088950429	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAACTGTCATCCTCCTCC	NA	False	NA	-22	True	AATAAA	-14	NA	5049067	5019697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_5020104_5020227_5020481_5020625_5020724_5020995_5021159_5021519_5021643_5022811_5022942_5028472_5028580_5032283_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
transcript_6454.known	chr11	+	1790	9	FSM	ENSMUSG00000034175.14	ENSMUST00000036320.12	1790	9	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_6	83.1500901983876	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5049438	5056091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055180_5055314_5055432_5055718_5055799
transcript_6455.known	chr11	+	2333	9	FSM	ENSMUSG00000034175.14	ENSMUST00000101610.10	2333	9	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_2	51.4605431374369	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	9767	False	NA	16	True	AATAAA	-17	NA	5048925	5056091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_5049567_5049747_5049899_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
transcript_6466.known	chr11	+	1611	8	FSM	ENSMUSG00000034175.14	ENSMUST00000109878.9	1611	8	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_1	73.7707424998528	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AACCTGGTCTCCTGAGTGTC	NA	False	NA	16	True	AATAAA	-17	NA	5050156	5056091	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_5050227_5050396_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055184_5055348_5055432_5055718_5055799
transcript_6478.known	chr11	-	1290	9	FSM	ENSMUSG00000009079.17	ENSMUST00000093365.12	1290	9	0	0	0	0	multi-exon	FALSE	canonical	2	21	junction_1	1813.8341296822	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGAGAGAGCATTTTATG	NA	False	NA	-5	True	ATTAAA	-21	NA	5049066	5030417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_5030689_5032252_5032434_5033359_5033572_5035895_5036064_5037959_5038147_5041858_5041983_5043680_5043733_5043868_5043906_5049008
transcript_6479.known	chr11	+	1707	7	FSM	ENSMUSG00000034175.14	ENSMUST00000129016.3	1707	7	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_4	70.035110242411	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGGTCTCCTGAGTGTCAG	NA	False	NA	18	True	AATAAA	-19	NA	5050236	5056093	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_5050588_5051868_5051906_5053160_5053350_5054020_5054405_5055180_5055348_5055432_5055718_5055799
transcript_648.known	chr1	-	3472	4	FSM	ENSMUSG00000058407.13	ENSMUST00000193832.6	3472	4	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_3	348.930747665875	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTCACATGTCTGTTTTTAA	NA	False	NA	-3	True	NA	NA	NA	38036324	38026474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_38029539_38033072_38033192_38034713_38034923_38036244
transcript_6480.known	chr11	-	1947	15	FSM	ENSMUSG00000034164.18	ENSMUST00000062821.13	1947	15	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_2	4.11815294439988	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCGCTTGGTCTCTATGTG	7862	False	NA	NA	False	AATAAA	-19	NA	5102257	5056264	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_5056970_5060689_5060775_5066879_5066925_5078869_5078915_5079008_5079072_5079427_5079481_5079621_5079721_5080631_5080779_5081481_5081572_5081919_5082041_5084348_5084411_5085353_5085432_5093826_5093931_5094294_5094409_5102121
transcript_6481.known	chr11	-	1923	15	FSM	ENSMUSG00000034164.18	ENSMUST00000163299.8	1923	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	6.0995148686312	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTTCGCTTGGTCTCTATGT	7879	False	NA	NA	False	AATAAA	-18	NA	5102240	5056265	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_5056970_5060689_5060775_5066879_5066925_5078869_5078915_5079008_5079072_5079427_5079481_5079621_5079721_5080631_5080779_5081481_5081572_5081919_5082041_5084348_5084411_5085353_5085432_5093826_5093925_5094294_5094409_5102121
transcript_6483.known	chr11	+	2129	5	FSM	ENSMUSG00000020484.20	ENSMUST00000063084.16	2129	5	0	0	0	0	multi-exon	FALSE	canonical	3	876	junction_4	35.2801289680182	138	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTGTTCTGTGATTTCTA	NA	False	NA	34	True	ATTAAA	-17	NA	5470658	5475893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_5471201_5471922_5472020_5473332_5473468_5474238_5474385_5474684
transcript_6485.known	chr11	+	987	3	FSM	ENSMUSG00000020484.20	ENSMUST00000145588.2	987	3	0	0	0	0	multi-exon	FALSE	canonical	3	908	junction_2	32	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCAGGTGGACAGCAAGCC	NA	False	NA	NA	False	NA	NA	NA	5471004	5474026	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_5471201_5471922_5472020_5473332
transcript_6487.known	chr11	+	1840	7	FSM	ENSMUSG00000083844.9	ENSMUST00000142942.8	1840	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	34.0216434379973	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAATTGACATTTAAGTTTC	NA	False	NA	NA	False	AATAAA	-23	NA	5712149	5734710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_5712241_5715508_5715572_5718885_5719073_5719166_5719244_5730205_5730636_5732184_5732358_5733891
transcript_6489.nic	chr11	+	879	5	ISM	ENSMUSG00000083844.9	ENSMUST00000142942.8	1840	7	-43	4087	-22	-1253	5prime_fragment	FALSE	canonical	3	13	junction_2	33.1313673125635	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACCAGCAGACTGTGAGTCA	NA	False	NA	9	True	NA	NA	NA	5712106	5730623	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_5712241_5715508_5715572_5718885_5719073_5719166_5719244_5730205
transcript_6494.known	chr11	-	995	4	FSM	ENSMUSG00000020477.11	ENSMUST00000154330.2	995	4	0	0	0	0	multi-exon	FALSE	canonical	3	1753	junction_3	448.803099612984	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAATCAACAGTGGAAGTAC	NA	False	NA	NA	False	ATTAAA	-11	NA	5657687	5653982	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_5654733_5657297_5657410_5657486_5657556_5657623
transcript_6498.nnic	chr11	-	655	4	NNC	ENSMUSG00000020477.11	novel	995	4	NA	NA	-21	0	at_least_one_novel_splicesite	FALSE	canonical	3	67	junction_3	1216.61890317205	28	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCTGGGTCTCTCTCTC	NA	False	NA	-25	True	AATAAA	-18	NA	5657711	5654325	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_5654733_5657297_5657410_5657486_5657556_5657644
transcript_6499.known	chr11	+	1846	3	FSM	ENSMUSG00000083844.9	ENSMUST00000137510.8	1846	3	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_2	16.5	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCTTTTTGTTGTTGTTTTGT	NA	False	NA	NA	False	NA	NA	NA	5712128	5731876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_5712241_5715508_5715572_5730205
transcript_650.known	chr1	-	1348	1	FSM	ENSMUSG00000058407.13	ENSMUST00000194692.2	1348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAACAA	NA	False	NA	NA	False	NA	NA	NA	38036343	38034995	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_38035000_38036300
transcript_6505.known	chr11	-	700	3	FSM	ENSMUSG00000020477.11	ENSMUST00000020770.11	700	3	0	0	0	0	multi-exon	FALSE	canonical	3	2385	junction_2	231.5	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCCTCTGGGTCTCTCTCTC	NA	False	NA	-25	True	AATAAA	-18	NA	5657667	5654325	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_5654733_5657297_5657410_5657486
transcript_6507.known	chr11	+	1638	13	FSM	ENSMUSG00000020476.15	ENSMUST00000020769.14	1638	13	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	109.921057531707	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGGACAGCAGCACTGAGACG	NA	False	NA	NA	False	NA	NA	NA	5738521	5750288	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747274_5747336_5747626_5747721_5748015_5748112_5748215_5748326_5749233_5749340_5749859
transcript_651.known	chr1	+	7797	24	FSM	ENSMUSG00000026083.13	ENSMUST00000027252.8	7797	24	0	0	0	0	multi-exon	FALSE	canonical	3	450	junction_9	76.9774965275217	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAAGTTCAGACCCTCGGCC	1289	False	NA	NA	False	AATAAA	-16	NA	38037090	38094660	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945_38058616_38060674_38060893_38061244_38061396_38071357_38071457_38072148_38072239_38073109_38073185_38075073_38075355_38076283_38076392_38076627_38076739_38079753_38079822_38080777_38080920_38083784_38083917_38084404_38084588_38084728_38084891_38085692_38085825_38087873_38088006_38088097_38088175_38088256_38088422_38089267_38089407_38090203_38090366_38090686
transcript_6511.known	chr11	+	2295	13	FSM	ENSMUSG00000020476.15	ENSMUST00000102928.5	2295	13	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_7	84.6740072277201	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AATGATATAACTGATGTCAG	NA	False	NA	-2	True	NA	NA	NA	5738529	5750962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_5738643_5741791_5741848_5743649_5743763_5744236_5744312_5745447_5745595_5746745_5746824_5747023_5747176_5747283_5747336_5747626_5747721_5748015_5748112_5748215_5748326_5749233_5749340_5749859
transcript_6518.known	chr11	-	840	3	FSM	ENSMUSG00000020475.4	ENSMUST00000020768.4	840	3	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	6	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGCCACGTTTCATATAGCT	8648	False	NA	NA	False	AATAAA	-15	NA	5753733	5751639	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_5751840_5752998_5753180_5753274
transcript_6519.known	chr11	-	2924	11	FSM	ENSMUSG00000020474.12	ENSMUST00000020767.4	2924	11	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	4.04969134626332	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTATAGTTTTACAAGTTTT	380	False	NA	NA	False	AATAAA	-18	NA	5788016	5777860	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_5779116_5779310_5779395_5779476_5779726_5779825_5779929_5780067_5780201_5781659_5781781_5784741_5784814_5785415_5785587_5785700_5785800_5786193_5786375_5787560
transcript_6520.nnic	chr11	-	1544	11	NNC	ENSMUSG00000020471.12	novel	1646	11	NA	NA	31	0	at_least_one_novel_splicesite	FALSE	canonical	3	48	junction_4	880.90807692971	55	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTCTGAACCTTGTTCACTT	9536	False	NA	-6	True	AATAAA	-17	NA	5828261	5822187	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823504_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
transcript_6522.known	chr11	-	1646	11	FSM	ENSMUSG00000020471.12	ENSMUST00000102922.10	1646	11	0	0	0	0	multi-exon	FALSE	canonical	3	869	junction_10	541.870242770352	1049	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGTTCACTTGGGCATGT	9505	False	NA	2	True	AATAAA	-25	NA	5828292	5822179	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_5822419_5822669_5822772_5823026_5823155_5823408_5823567_5823688_5823770_5824023_5824223_5824314_5824430_5824760_5824885_5825053_5825176_5826712_5826990_5828191
transcript_6533.known	chr11	-	590	7	FSM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_6	30.6671195618731	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTGTTGGCTTGACTG	NA	False	NA	2	True	AATAAA	-20	NA	5848782	5846636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831_5847937_5848159_5848236_5848425_5848540_5848760
transcript_6534.nic	chr11	-	797	6	ISM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	14	0	14	0	intron_retention	FALSE	canonical	3	38	junction_4	23.9115035077261	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTGTTGGCTTGACTG	NA	False	NA	2	True	AATAAA	-20	NA	5848768	5846636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831_5847937_5848159_5848236_5848425
transcript_6535.nnic	chr11	-	665	5	NIC	ENSMUSG00000020469.9	novel	590	7	NA	NA	70	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_4	39.4271480074326	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTGTTGGCTTGACTG	NA	False	NA	2	True	AATAAA	-20	NA	5848712	5846636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831_5847937_5848425
transcript_6536.nic	chr11	-	1148	4	ISM	ENSMUSG00000020469.9	ENSMUST00000102921.4	590	7	76	0	76	0	intron_retention	FALSE	canonical	3	77	junction_3	8.80656320908194	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGTGTTGGCTTGACTG	NA	False	NA	2	True	AATAAA	-20	NA	5848706	5846636	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_5846782_5847125_5847175_5847319_5847399_5847831
transcript_6537.known	chr11	-	2361	10	FSM	ENSMUSG00000041798.16	ENSMUST00000109823.9	2361	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	1.59474445493415	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCCTGCTGATTGTTCT	1855	False	NA	NA	False	ATTAAA	-19	NA	5865124	5850819	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_5851815_5852084_5852319_5853099_5853256_5854360_5854545_5856476_5856577_5856682_5856779_5859082_5859203_5860277_5860433_5860861_5861025_5864966
transcript_6538.known	chr11	+	2541	7	FSM	ENSMUSG00000002741.10	ENSMUST00000002818.9	2541	7	0	0	0	0	multi-exon	FALSE	canonical	3	192	junction_4	17.3205080756888	198	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTGTCTTGTGTTTACTTT	NA	False	NA	19	True	GATAAA	-20	NA	5905692	5917780	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_5906005_5909296_5909380_5911187_5911289_5912336_5912442_5912692_5912759_5914560_5914663_5916008
transcript_6540.known	chr11	-	1973	21	FSM	ENSMUSG00000057897.15	ENSMUST00000093355.12	1973	21	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_5	41.4625131896271	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATGATGACAACGACAACCA	3040	False	NA	-144	True	TTTAAA	-6	NA	6015582	5921668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5926764_5926894_5927811_5927941_5929672_5929722_5932500_5932573_5932720_5932762_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449_5965510_5978866_5978962_6015473
transcript_6541.known	chr11	-	4004	20	FSM	ENSMUSG00000057897.15	ENSMUST00000090443.10	4004	20	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_8	42.1055921039782	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAATAAAAAAAAAAAAAAAA	2874	False	NA	NA	False	NA	NA	NA	6015748	5919671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_5921827_5922216_5922451_5922631_5922727_5922812_5922889_5926764_5926894_5929672_5929722_5932500_5932573_5932720_5932759_5938100_5938144_5938954_5939039_5939331_5939455_5939573_5939669_5940162_5940247_5940319_5940423_5942819_5942893_5947882_5947949_5951337_5951393_5965449_5965510_5978866_5978962_6015473
transcript_6544.known	chr11	-	3927	6	FSM	ENSMUSG00000053838.15	ENSMUST00000066496.10	3927	6	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_5	15.4090882274066	75	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTTTGTTTATCTGGCTTA	9458	False	NA	NA	False	NA	NA	NA	6150415	6055690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_6058356_6063242_6063432_6075417_6075562_6100494_6100628_6143153_6143477_6149942
transcript_6550.known	chr11	-	393	1	FSM	ENSMUSG00000083022.2	ENSMUST00000117476.2	393	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	573	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ATGTAAAGCATAAATAAAAA	NA	False	NA	-51	True	AAAACA	-35	NA	6123036	6122643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_6122600_6123000
transcript_6554.known	chr11	-	1956	14	FSM	ENSMUSG00000004393.11	ENSMUST00000004507.11	1956	14	0	0	0	0	multi-exon	FALSE	canonical	3	937	junction_7	74.9654752883426	278	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGTGGTGTTGTCTGGCTCTG	4489	False	NA	-2	True	NA	NA	NA	6217772	6208918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_6209259_6209546_6209621_6211615_6211722_6212456_6212547_6212662_6212737_6213938_6214034_6214123_6214238_6214675_6214796_6215511_6215757_6216315_6216407_6216511_6216683_6216810_6216972_6217417_6217580_6217659
transcript_656.nic	chr1	+	1337	6	ISM	ENSMUSG00000026083.13	ENSMUST00000192548.6	5788	22	-20	29836	-20	-23255	5prime_fragment	FALSE	canonical	3	510	junction_5	62.9558575511445	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAGAAAGGAAAAAGCAAAAA	1388	False	NA	NA	False	NA	NA	NA	38037189	38061266	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945_38058616_38060674_38060893_38061244
transcript_6577.known	chr11	-	2003	5	FSM	ENSMUSG00000004394.13	ENSMUST00000004508.13	2003	5	0	0	0	0	multi-exon	FALSE	canonical	3	418	junction_4	49.7663289785373	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAAATTCTCCCTTTGTTTT	5338	False	NA	NA	False	ATTAAA	-24	NA	6224870	6220368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_6221801_6223740_6223888_6224107_6224234_6224397_6224499_6224673
transcript_658.nic	chr1	+	1286	5	ISM	ENSMUSG00000026083.13	ENSMUST00000192548.6	5788	22	-148	30367	-29	-23786	5prime_fragment	FALSE	canonical	3	579	junction_4	48.9948976935354	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	GAAAGAAAAAGAGAAGAAGA	1260	False	NA	15	True	AAAAAG	-39	NA	38037061	38060735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945_38058616_38060674
transcript_6583.known	chr11	+	4127	23	FSM	ENSMUSG00000020456.18	ENSMUST00000003461.15	4127	23	0	0	0	0	multi-exon	FALSE	canonical	3	535	junction_8	60.360778272973	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGCCTGCTGTCGTGTGT	NA	False	NA	14	True	CATAAA	-18	NA	6241632	6306642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_6241694_6246951_6247200_6263787_6263980_6266977_6267081_6284532_6284649_6288557_6288713_6289108_6289256_6289837_6289929_6290442_6290623_6292494_6292624_6296514_6296695_6297097_6297251_6297828_6297932_6298234_6298364_6298657_6298809_6299099_6299228_6299314_6299494_6299841_6299914_6300605_6300735_6302125_6302199_6304928_6305093_6305290_6305446_6305553
transcript_6589.known	chr11	+	779	2	FSM	ENSMUSG00000020456.18	ENSMUST00000125929.2	779	2	0	0	0	0	multi-exon	FALSE	canonical	3	605	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTTGTGTTTCTATTTTT	NA	False	NA	NA	False	TATAAA	-12	NA	6241640	6247677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_6241694_6246951
transcript_659.nic	chr1	+	1443	5	ISM	ENSMUSG00000026083.13	ENSMUST00000192548.6	5788	22	-148	30210	-29	-23629	5prime_fragment	FALSE	canonical	3	579	junction_4	48.9948976935354	447	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTATGTCTTATACTGGTAGT	1260	False	NA	NA	False	NA	NA	NA	38037061	38060892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945_38058616_38060674
transcript_6594.known	chr11	+	746	5	FSM	ENSMUSG00000071866.13	ENSMUST00000090749.13	746	5	0	0	0	0	multi-exon	FALSE	canonical	3	147	junction_1	16065.018555467	654	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTCCTTGTTTGTATTGG	NA	False	NA	0	True	AATAAA	-17	NA	6365869	6369815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_6365985_6368100_6368132_6368225_6368315_6369112_6369286_6369477
transcript_6596.known	chr11	+	677	4	FSM	ENSMUSG00000071866.13	ENSMUST00000137829.8	677	4	0	0	0	0	multi-exon	FALSE	canonical	3	36680	junction_3	786.740674484858	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAGAGCGTCCCTACCCCAT	NA	False	NA	NA	False	NA	NA	NA	6365875	6369663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_6365980_6368100_6368315_6369112_6369286_6369477
transcript_66.known	SIRV1	-	1561	6	FSM	SIRV1A	SIRV101	1561	6	0	0	0	0	multi-exon	FALSE	canonical	3	1499	junction_5	1975.53128044078	650	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10786	1000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10444
transcript_660.nic	chr1	+	912	4	ISM	ENSMUSG00000026083.13	ENSMUST00000192548.6	5788	22	-34	32686	-34	-26105	5prime_fragment	FALSE	canonical	3	590	junction_2	48.3758433747901	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAGAAGAAAAAGAGAGATGA	1374	False	NA	-13	True	NA	NA	NA	38037175	38058416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945
transcript_6601.known	chr11	-	1633	5	FSM	ENSMUSG00000041126.17	ENSMUST00000109737.9	1633	5	0	0	0	0	multi-exon	FALSE	canonical	3	3133	junction_4	74.0485482639599	731	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTGTCCTGGTCCTGA	NA	False	NA	-5	True	AATAAA	-24	NA	6394443	6377228	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_6378433_6379095_6379226_6383723_6383838_6389375_6389454_6394336
transcript_6606.known	chr11	-	519	4	FSM	ENSMUSG00000041126.17	ENSMUST00000093346.6	519	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_2	1363.86957669061	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTACTGTGTCTCAGTATTTC	NA	False	NA	-3	True	GATAAA	-16	NA	6394352	6378137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_6378433_6379095_6379226_6389375_6389454_6394336
transcript_6607.known	chr11	-	3307	22	FSM	ENSMUSG00000020437.13	ENSMUST00000003459.4	3307	22	0	0	0	0	multi-exon	TRUE	canonical	1	1	junction_15	5.11677690501468	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGGCTGCCACTGCTTTG	5089	False	NA	0	True	AATAAA	-20	NA	6470958	6456547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_6456833_6456906_6457062_6457868_6457983_6458189_6458295_6459324_6459470_6460147_6460372_6460867_6461076_6461482_6461650_6462160_6462294_6462462_6462538_6464466_6464538_6464751_6464923_6465093_6465209_6465848_6465995_6466078_6466304_6466747_6466865_6467086_6467198_6467569_6467624_6467851_6468018_6468733_6468828_6468978_6469188_6470741
transcript_661.nic	chr1	+	1122	4	ISM	ENSMUSG00000026083.13	ENSMUST00000192548.6	5788	22	-45	32487	-45	-25906	5prime_fragment	FALSE	canonical	3	590	junction_2	48.3758433747901	173	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTTGGTCATGGCCACAGAAG	1363	False	NA	NA	False	NA	NA	NA	38037164	38058615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_38037406_38056886_38057013_38057105_38057191_38057945
transcript_6610.known	chr11	-	611	4	FSM	ENSMUSG00000085156.9	ENSMUST00000147762.9	611	4	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_3	5.24933858267454	276	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTGATCGGGTTTGA	NA	False	NA	-1	True	NA	NA	NA	6478779	6475590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_6475818_6476354_6476438_6478305_6478375_6478547
transcript_6611.nnic	chr11	-	516	4	NNC	ENSMUSG00000085156.9	novel	611	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_3	196.105980417619	24	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTGATCGGGTTTGA	NA	False	NA	-1	True	NA	NA	NA	6478766	6475590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_6475818_6476354_6476438_6478305_6478375_6478629
transcript_6612.known	chr11	-	1540	2	FSM	ENSMUSG00000085156.9	ENSMUST00000134527.3	1540	2	0	0	0	0	multi-exon	FALSE	canonical	3	436	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AATCCACTGTCTCCTGTTAT	NA	False	NA	NA	False	NA	NA	NA	6478763	6477050	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_6478375_6478547
transcript_6613.known	chr11	-	771	3	FSM	ENSMUSG00000085156.9	ENSMUST00000124818.3	771	3	0	0	0	0	multi-exon	FALSE	canonical	3	446	junction_1	1	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTTGATCGGGTTTGA	NA	False	NA	-1	True	NA	NA	NA	6478766	6475590	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_6475818_6476354_6476438_6478305
transcript_6617.known	chr11	+	1858	10	FSM	ENSMUSG00000000378.16	ENSMUST00000000388.15	1858	10	0	0	0	0	multi-exon	TRUE	canonical	3	315	junction_9	41.5204843093617	77	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTCCAGTTGTCAAGCATTT	NA	False	NA	15	True	AAAACA	-27	NA	6496886	6546744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_6497030_6519963_6520138_6534519_6534604_6535033_6535218_6539431_6539569_6540752_6540889_6543066_6543125_6543601_6543741_6544147_6544287_6546080
transcript_6625.known	chr11	-	2347	13	FSM	ENSMUSG00000000384.16	ENSMUST00000189268.7	2347	13	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	134.990406037697	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGGGCCACTGGCTTTTC	NA	False	NA	-6	True	AATAAA	-18	NA	6576067	6565598	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_6565767_6566557_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
transcript_6637.known	chr11	-	2290	12	FSM	ENSMUSG00000000384.16	ENSMUST00000000394.14	2290	12	0	0	0	0	multi-exon	FALSE	canonical	3	438	junction_8	40.423788103394	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTATCTTCCCAGGCT	NA	False	NA	-27	True	AATAAA	-19	NA	6576043	6566422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6575964
transcript_6638.nic	chr11	-	2256	12	NIC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	24	junction_11	154.867151813236	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTATCTTCCCAGGCT	NA	False	NA	-27	True	AATAAA	-19	NA	6576067	6566422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570144_6570741_6571066_6573815_6574284_6575148_6575214_6576022
transcript_6639.nic	chr11	-	2398	12	NIC	ENSMUSG00000000384.16	novel	2290	12	NA	NA	-6	0	combination_of_known_junctions	FALSE	canonical	3	46	junction_8	147.44311131545	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTATCTTCCCAGGCT	NA	False	NA	-27	True	AATAAA	-19	NA	6576073	6566422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_6566715_6567307_6567423_6567517_6567630_6567962_6568209_6568459_6568605_6568996_6569111_6569555_6569714_6569971_6570222_6570741_6571066_6573815_6574284_6575148_6575214_6575964
transcript_664.known	chr1	+	3914	6	FSM	ENSMUSG00000026078.11	ENSMUST00000027247.11	3914	6	0	0	0	0	multi-exon	FALSE	canonical	3	825	junction_1	70.5532423067856	543	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTATTGTAAGATTTATT	NA	False	NA	3	True	AATACA	-13	NA	39024688	39036319	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_39026931_39030326_39030457_39033995_39034087_39034325_39034470_39034815_39035025_39035221
transcript_6646.known	chr11	-	853	4	FSM	ENSMUSG00000000384.16	ENSMUST00000131815.8	853	4	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	235.927013195936	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGATGAGATAAGGCCTATTT	NA	False	NA	-12	True	AATAAA	-6	NA	6576022	6573199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_6573462_6573815_6574284_6575148_6575214_6575964
transcript_6652.known	chr11	+	1233	3	FSM	ENSMUSG00000041046.8	ENSMUST00000045374.8	1233	3	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	3.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGTATTTCTCATTTTAT	NA	False	NA	14	True	ATTAAA	-14	NA	6608520	6627475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_6608628_6624762_6624896_6626482
transcript_6653.nic	chr11	+	1168	2	ISM	ENSMUSG00000041046.8	ENSMUST00000139540.2	1333	4	16156	-3	16156	0	3prime_fragment	FALSE	canonical	3	12	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTGGTATTTCTCATTTTAT	NA	False	NA	14	True	ATTAAA	-14	NA	6624720	6627475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_6624896_6626482
transcript_6654.known	chr11	-	1007	4	FSM	ENSMUSG00000087512.3	ENSMUST00000122910.3	1007	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.4142135623731	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCCAACGTTTATGCCTG	NA	False	NA	NA	False	AATAAA	-18	NA	7138569	7133152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_7133462_7134628_7134842_7136092_7136519_7138510
transcript_6655.known	chr11	-	2421	5	FSM	ENSMUSG00000020427.12	ENSMUST00000020702.11	2421	5	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_4	11.7340317027013	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCCTTTTGTCTGTTTCTGG	NA	False	NA	NA	False	AATAAA	-23	NA	7163897	7156085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_7157507_7158368_7158509_7159458_7159579_7160018_7160246_7163384
transcript_6657.known	chr11	-	4640	8	FSM	ENSMUSG00000020413.12	ENSMUST00000020683.10	4640	8	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_5	37.6557988054094	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGGAATTCATTTATTAAT	NA	False	NA	92	True	AATAAA	-21	NA	8961191	8943136	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_8946933_8948636_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496_8960625_8961058
transcript_6659.known	chr11	-	2114	7	FSM	ENSMUSG00000020413.12	ENSMUST00000139877.8	2114	7	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_4	35.6436841841892	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAGAGAAACCACAAGGAGAC	NA	False	NA	NA	False	NA	NA	NA	8961164	8947339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_8948757_8950076_8950177_8955988_8956064_8957493_8957605_8960240_8960418_8960496_8960625_8961058
transcript_6673.known	chr11	+	1157	9	FSM	ENSMUSG00000020407.14	ENSMUST00000101525.9	1157	9	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	904.856126339983	163	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGTGTGACTCTGCGGTAGA	NA	False	NA	26	True	AATAAA	-20	NA	9068106	9086170	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_9068163_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
transcript_6674.known	chr11	+	1277	9	FSM	ENSMUSG00000020407.14	ENSMUST00000020677.8	1277	9	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	932.389931506663	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACACATTGTGTGACTCTGC	NA	False	NA	20	True	AATAAA	-14	NA	9068102	9086164	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_9068285_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
transcript_6678.known	chr11	+	1252	9	FSM	ENSMUSG00000020407.14	ENSMUST00000164791.8	1252	9	0	0	0	0	multi-exon	FALSE	canonical	3	2502	junction_1	159.654656602932	2513	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTGTGTGACTCTGCGGT	NA	False	NA	23	True	AATAAA	-17	NA	9068506	9086167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_9068661_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
transcript_6684.nic	chr11	+	1425	9	NIC	ENSMUSG00000020407.14	novel	1252	9	NA	NA	-7	0	combination_of_known_junctions	FALSE	canonical	3	101	junction_1	905.183821110386	167	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATTGTGTGACTCTGCGGT	NA	False	NA	23	True	AATAAA	-17	NA	9068540	9086167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_9068868_9069373_9069450_9075632_9075699_9079487_9079606_9081629_9081789_9083233_9083349_9084721_9084932_9085163_9085311_9085960
transcript_67.known	SIRV1	-	1363	6	FSM	SIRV1A	SIRV103	1363	6	0	0	0	0	multi-exon	FALSE	canonical	3	1304	junction_5	2022.74937646758	1277	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10791	1000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV1_-_1485_6337_6474_6560_6814_7552_7815_10282_10367_10647
transcript_6700.nnic	chr11	-	2795	4	NNC	ENSMUSG00000035455.13	novel	2974	3	NA	NA	0	-87	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_1	272.570887823496	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGACGGAGTTGCTTCATT	NA	False	NA	-8	True	AATAAA	-21	NA	11758959	11750374	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_11752762_11752850_11753064_11756095_11756216_11758884
transcript_6705.known	chr11	-	2807	3	FSM	ENSMUSG00000035455.13	ENSMUST00000109664.2	2807	3	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_1	194	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAGCAAGATGTAATCTT	NA	False	NA	NA	False	AATAAA	-11	NA	11758932	11750551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_11753064_11755958_11756216_11758894
transcript_6706.nnic	chr11	-	3164	3	NNC	ENSMUSG00000035455.13	novel	2974	3	NA	NA	-2	-88	at_least_one_novel_splicesite	FALSE	canonical	3	97	junction_2	266.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGACGGAGTTGCTTCAT	NA	False	NA	-9	True	AATAAA	-20	NA	11758950	11750375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_11753064_11756095_11756216_11758594
transcript_6707.known	chr11	-	2974	3	FSM	ENSMUSG00000035455.13	ENSMUST00000171938.2	2974	3	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_2	284.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTTTGTAGTCTGTTTG	NA	False	NA	79	True	TTTAAA	-38	NA	11758962	11750287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_11753064_11756095_11756216_11758884
transcript_6708.known	chr11	-	2961	3	FSM	ENSMUSG00000035455.13	ENSMUST00000047689.11	2961	3	0	0	0	0	multi-exon	FALSE	canonical	3	411	junction_2	109.5	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGCTTTTGTAGTCTGTTTG	NA	False	NA	79	True	TTTAAA	-38	NA	11758959	11750287	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_11753064_11756095_11756216_11758894
transcript_671.nnic	chr1	+	789	7	NNC	ENSMUSG00000026077.16	novel	484	3	NA	NA	4133	25537	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	3.93347457373532	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGCGTTTGGATTTTTCCT	NA	False	NA	NA	False	NA	NA	NA	39237425	39352233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_+_39237508_39302399_39302457_39326548_39326698_39331767_39331860_39339724_39339815_39350921_39351043_39352035
transcript_6710.known	chr11	-	421	2	FSM	ENSMUSG00000035455.13	ENSMUST00000150714.2	421	2	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_1	0	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGTTGTGTACAGGAGATGAT	NA	False	NA	NA	False	AATAGA	-17	NA	11758948	11752696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_11753064_11758894
transcript_6711.nnic	chr11	-	2213	16	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	-1678	0	at_least_one_novel_splicesite	TRUE	canonical	1	1	junction_15	30.1922727420996	26	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	3960	False	NA	-1	True	AATAAA	-21	NA	11832307	11764100	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11831367_11831640_11832251
transcript_6712.nnic	chr11	-	2117	15	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	-1854	0	at_least_one_novel_splicesite	FALSE	canonical	3	14	junction_14	27.1151174040743	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	3784	False	NA	-1	True	AATAAA	-21	NA	11832483	11764100	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11832251
transcript_6713.known	chr11	-	1954	15	FSM	ENSMUSG00000020182.17	ENSMUST00000109659.9	1954	15	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_14	28.5478474116129	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTATTGAGTAAGCGTC	NA	False	NA	-3	True	AATAAA	-19	NA	11840408	11764102	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11789397_11789493_11796635_11796703_11813650_11813795_11814893_11815029_11823133_11823254_11826244_11826359_11830441_11830651_11840337
transcript_6714.nnic	chr11	-	1167	8	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	-215	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_7	36.6528112350004	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	NA	False	NA	-1	True	AATAAA	-21	NA	11786495	11764100	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11774848_11774869_11779101_11779179_11785741_11785810_11786329
transcript_6717.nnic	chr11	-	994	5	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	231	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_4	40.5362492098122	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	NA	False	NA	-1	True	AATAAA	-21	NA	11772690	11764100	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11772532
transcript_6718.nnic	chr11	-	1011	5	NNC	ENSMUSG00000020182.17	novel	1922	15	NA	NA	-32	0	at_least_one_novel_splicesite	FALSE	canonical	3	8	junction_4	42.6438741204408	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTGAGTAAGCGTCTT	NA	False	NA	-1	True	AATAAA	-21	NA	11772953	11764100	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11772778
transcript_6719.known	chr11	-	964	5	FSM	ENSMUSG00000020182.17	ENSMUST00000136810.8	964	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	46.0271658914602	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTATTGAGTAAGCGTC	NA	False	NA	-3	True	AATAAA	-19	NA	11772921	11764102	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_11764518_11765210_11765429_11769290_11769393_11772194_11772294_11772791
transcript_672.known	chr1	+	487	5	FSM	ENSMUSG00000073702.12	ENSMUST00000178079.8	487	5	0	0	0	0	multi-exon	FALSE	canonical	3	1086	junction_1	4596.75456164455	564	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCAGGGTTTGGTTTTCC	NA	False	NA	24	True	AATAAA	-13	NA	39407009	39410445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_39407088_39407229_39407337_39409094_39409221_39410034_39410148_39410382
transcript_6720.nnic	chr11	+	1102	3	NNC	ENSMUSG00000086391.2	novel	1075	4	NA	NA	13969	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_1	3	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGTAAATATTTTATTT	2688	False	NA	NA	False	NA	NA	NA	11832091	11835321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_11832389_11832956_11833080_11834639
transcript_6721.nnic	chr11	+	1063	3	NNC	ENSMUSG00000086391.2	novel	1075	4	NA	NA	13993	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	5.5	4	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTGTAAATATTTTATTT	2712	False	NA	NA	False	NA	NA	NA	11832115	11835321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_11832389_11832971_11833080_11834639
transcript_6725.known	chr11	+	379	1	FSM	ENSMUSG00000081631.2	ENSMUST00000121451.2	379	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	21	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GACACATTGGTCTGCAATGT	NA	False	NA	NA	False	NA	NA	NA	14112078	14112457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_14112100_14112500
transcript_6728.known	chr11	-	450	4	FSM	ENSMUSG00000078974.11	ENSMUST00000109641.2	450	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_3	2930.40759394775	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTCCATAACAGACATTTAT	NA	False	NA	-51	True	AATAAA	-6	NA	16458069	16451650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16457979
transcript_6729.known	chr11	-	779	4	FSM	ENSMUSG00000078974.11	ENSMUST00000178855.8	779	4	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_3	2890.84082347449	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTATCAAATTTTAGTAA	NA	False	NA	-38	True	AATAAA	-19	NA	16458484	16451637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458078
transcript_6730.known	chr11	-	754	4	FSM	ENSMUSG00000078974.11	ENSMUST00000166950.8	754	4	0	0	0	0	multi-exon	FALSE	canonical	3	4864	junction_3	651.205207459386	639	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CATTTATCAAATTTTAGTAA	NA	False	NA	-38	True	AATAAA	-19	NA	16458484	16451637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_16451808_16454735_16454839_16456372_16456473_16458103
transcript_6737.known	chr11	-	747	5	FSM	ENSMUSG00000087060.8	ENSMUST00000136053.8	747	5	0	0	0	0	multi-exon	TRUE	canonical	3	6	junction_3	9.35414346693485	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAGCACAGAAGAATATTTTG	NA	False	NA	NA	False	CATAAA	-28	NA	16901282	16885628	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_16885842_16886454_16886565_16887372_16887485_16900881_16900931_16901019
transcript_6738.known	chr11	-	787	4	FSM	ENSMUSG00000087060.8	ENSMUST00000123734.8	787	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	8.25967446224258	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTTTATTCACTATAGACAC	NA	False	NA	NA	False	AATACA	-33	NA	16901042	16885321	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_16885927_16886454_16886565_16900881_16900931_16901019
transcript_6739.known	chr11	-	941	4	FSM	ENSMUSG00000087060.8	ENSMUST00000139493.8	941	4	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	8.73053390247253	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAATGAAGGTGTATCGTT	NA	False	NA	NA	False	ATTAAA	-16	NA	16901118	16885158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_16885842_16886454_16886565_16900881_16900931_16901019
transcript_6742.known	chr11	-	1540	3	FSM	ENSMUSG00000087060.8	ENSMUST00000130392.8	1540	3	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAAGGTGTATCGTTTATTT	NA	False	NA	NA	False	ATTAAA	-21	NA	16901099	16885153	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_16886565_16900881_16900931_16901019
transcript_6744.known	chr11	+	1098	4	FSM	ENSMUSG00000044966.5	ENSMUST00000109635.2	1098	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	1.88561808316413	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCTTTGTTTGTATTTTGC	NA	False	NA	NA	False	AAGAAA	-16	NA	16901374	16904447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_16901432_16902255_16902465_16903141_16903682_16904155
transcript_6745.known	chr11	+	2002	8	FSM	ENSMUSG00000078970.6	ENSMUST00000046955.7	2002	8	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	21.86601127274	238	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAATATTTGGAGGCGTTGA	2471	False	NA	8	True	AATAAA	-10	NA	17161917	17183796	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_17162147_17169013_17169115_17172196_17172328_17174548_17174651_17177160_17177277_17178140_17178276_17179768_17179867_17182706
transcript_675.known	chr1	+	1049	5	FSM	ENSMUSG00000073702.12	ENSMUST00000086535.12	1049	5	0	0	0	0	multi-exon	FALSE	canonical	3	7651	junction_1	2133.80345568658	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGCATGGTTTGAACATGTTT	NA	False	NA	10	True	ATTAAA	-23	NA	39406922	39410992	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_39407016_39407229_39407337_39409094_39409221_39410034_39410148_39410382
transcript_6751.known	chr11	-	1544	7	FSM	ENSMUSG00000020116.8	ENSMUST00000020317.8	1544	7	0	0	0	0	multi-exon	FALSE	canonical	3	1392	junction_5	81.0276016072438	259	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAGCAGTCTCTTTTTCTAA	NA	False	NA	48	True	AGTAAA	-19	NA	17161568	17153197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_17154002_17154500_17154572_17158788_17158907_17159076_17159138_17159310_17159395_17160987_17161138_17161312
transcript_6755.known	chr11	+	2859	6	FSM	ENSMUSG00000033953.11	ENSMUST00000102880.5	2859	6	0	0	0	0	multi-exon	FALSE	canonical	3	579	junction_5	55.0962793662149	71	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTGAATGTATTGTGTCAG	NA	False	NA	11	True	AATAAA	-15	NA	17109262	17150375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_17109543_17132106_17132147_17142956_17143134_17144216_17144277_17144668_17144854_17148258
transcript_676.known	chr1	+	703	4	FSM	ENSMUSG00000073702.12	ENSMUST00000194746.6	703	4	0	0	0	0	multi-exon	FALSE	canonical	3	7651	junction_1	2213.20918326508	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCAGGGTTTGGTTTTCCTT	NA	False	NA	26	True	AATAAA	-15	NA	39406958	39410447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_39407016_39407229_39407337_39409094_39409221_39410034
transcript_6762.known	chr11	+	2981	5	FSM	ENSMUSG00000000581.9	ENSMUST00000000594.9	2981	5	0	0	0	0	multi-exon	FALSE	canonical	3	609	junction_3	54.4908249157599	482	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGAATTTTACAGTTGTCAC	7331	False	NA	NA	False	TATAAA	-17	NA	17207593	17219176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_17207659_17212647_17212795_17213608_17213676_17213950_17214007_17216530
transcript_6763.known	chr11	+	684	5	FSM	ENSMUSG00000000581.9	ENSMUST00000156784.2	684	5	0	0	0	0	multi-exon	TRUE	canonical	2	9	junction_1	280.161895160637	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAACGCACTCTGGGAACCC	7425	False	NA	NA	False	NA	NA	NA	17207687	17216624	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_17208008_17212647_17212795_17213608_17213676_17213950_17214007_17216530
transcript_6764.known	chr11	+	388	2	FSM	ENSMUSG00000086468.2	ENSMUST00000148496.2	388	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAATAAAAAGGGCTATGCT	NA	False	NA	NA	False	NA	NA	NA	17904003	17905098	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_17904086_17904792
transcript_6766.known	chr11	-	3196	13	FSM	ENSMUSG00000020160.19	ENSMUST00000068264.14	3196	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	0.897527467855751	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGTATTATTGCATTTATTT	NA	False	NA	NA	False	AATAAA	-30	NA	18968958	18830661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_18831923_18833987_18834083_18834386_18834477_18835592_18835652_18855688_18855766_18891658_18891805_18938267_18938380_18961241_18961389_18962809_18962861_18963631_18963683_18964249_18964392_18966132_18966360_18968220
transcript_6767.known	chr11	-	3631	9	FSM	ENSMUSG00000020152.8	ENSMUST00000000137.8	3631	9	0	0	0	0	multi-exon	FALSE	canonical	3	719	junction_1	58.8430114796991	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAATTTTGTCTTTTTCT	1336	False	NA	-4	True	AATAAA	-19	NA	20062913	20012303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_20014860_20022455_20022589_20027187_20027334_20030022_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
transcript_677.known	chr1	+	630	4	FSM	ENSMUSG00000073702.12	ENSMUST00000179954.8	630	4	0	0	0	0	multi-exon	FALSE	canonical	3	8615	junction_3	1758.8270712798	116	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTCAGGGTTTGGTTTTCCT	NA	False	NA	25	True	AATAAA	-14	NA	39407009	39410446	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_39407337_39409094_39409221_39410034_39410148_39410382
transcript_6770.known	chr11	-	2087	6	FSM	ENSMUSG00000020152.8	ENSMUST00000132022.2	2087	6	0	0	0	0	multi-exon	FALSE	canonical	3	722	junction_1	59.9486446885999	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGCC	1382	False	NA	NA	False	NA	NA	NA	20062867	20028685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_20030173_20030661_20030799_20041294_20041368_20044229_20044446_20050822_20050934_20062804
transcript_6772.known	chr11	+	2657	6	FSM	ENSMUSG00000020149.18	ENSMUST00000163483.2	2657	6	0	0	0	0	multi-exon	FALSE	canonical	3	1848	junction_1	130.08397287906	1024	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGCGCTTGTTGGGTCTAT	NA	False	NA	NA	False	AATAAA	-24	NA	20151601	20176856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_20151653_20165629_20165703_20168812_20168909_20173083_20173180_20174366_20174499_20174647
transcript_6776.known	chr11	+	962	3	FSM	ENSMUSG00000020149.18	ENSMUST00000132285.8	962	3	0	0	0	0	multi-exon	FALSE	canonical	3	1848	junction_1	46.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAGAAAAGAAAAGGA	NA	False	NA	NA	False	AAAACA	-45	NA	20151438	20169487	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_20151653_20165629_20165703_20168812
transcript_6777.known	chr11	-	4804	7	FSM	ENSMUSG00000044066.15	ENSMUST00000050611.14	4804	7	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_3	29.8756682863422	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATATTGGTGTTGTATCATTT	3055	False	NA	NA	False	ATTAAA	-23	NA	20199418	20177036	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_20179482_20180423_20180595_20186005_20186103_20188465_20188589_20189195_20190699_20191885_20192239_20199306
transcript_678.known	chr1	+	635	5	FSM	ENSMUSG00000003135.16	ENSMUST00000195567.2	635	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	347.966233994047	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGATGTTTCCCATGGATGAA	214	False	NA	27	True	AGTAAA	-15	NA	39579114	39584482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_39579157_39581480_39581684_39583972_39584070_39584149_39584234_39584273
transcript_6780.known	chr11	-	2171	4	FSM	ENSMUSG00000044066.15	ENSMUST00000109596.8	2171	4	0	0	0	0	multi-exon	FALSE	canonical	3	88	junction_1	18.3726850393609	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTTGTAGCTCAGTTGACT	3055	False	NA	-8	True	AATAAA	-17	NA	20199418	20188385	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_20188589_20189195_20190699_20191885_20192239_20199306
transcript_6781.known	chr11	-	2788	3	FSM	ENSMUSG00000044066.15	ENSMUST00000162811.2	2788	3	0	0	0	0	multi-exon	FALSE	canonical	3	111	junction_1	11	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTCTTGTAGCTCAGTTGAC	3044	False	NA	-9	True	AATAAA	-16	NA	20199429	20188386	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_20190699_20191885_20192239_20199306
transcript_6782.known	chr11	-	3872	8	FSM	ENSMUSG00000020142.13	ENSMUST00000004634.7	3872	8	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_4	11.5440593433354	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCTGAGTAACGTGTTTTTC	7790	False	NA	-5	True	NA	NA	NA	20282684	20252204	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_20254501_20256465_20256601_20257891_20258087_20258403_20258638_20263915_20264083_20268659_20268723_20270191_20270235_20281945
transcript_6785.nic	chr11	-	2572	6	ISM	ENSMUSG00000020142.13	ENSMUST00000109594.8	3926	8	-42	4652	-42	-4627	5prime_fragment	FALSE	canonical	3	286	junction_2	12.5698050899765	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATGTTCAGTAGTTACAGTT	7719	False	NA	NA	False	NA	NA	NA	20282755	20256831	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_20258087_20258403_20258638_20263915_20264083_20268659_20268723_20270191_20270235_20281945
transcript_6786.nic	chr11	-	1562	6	ISM	ENSMUSG00000020142.13	ENSMUST00000109594.8	3926	8	-42	5662	-42	-5637	5prime_fragment	FALSE	canonical	3	286	junction_2	12.5698050899765	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTGTGTGTCTGCGATTT	7719	False	NA	NA	False	NA	NA	NA	20282755	20257841	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_20258087_20258403_20258638_20263915_20264083_20268659_20268723_20270191_20270235_20281945
transcript_6787.known	chr11	+	399	1	FSM	ENSMUSG00000083878.4	ENSMUST00000119032.2	399	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	9	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTGTTATGCCATATTTTCA	NA	False	NA	NA	False	AAAACA	-16	NA	20396411	20396810	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_20396400_20396800
transcript_6788.known	chr11	+	5647	2	FSM	ENSMUSG00000049800.14	ENSMUST00000093292.11	5647	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTCACAGTTTTCTTGT	NA	False	NA	17	True	AATAAA	-17	NA	20493333	20603021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_20493761_20597801
transcript_6789.known	chr11	+	5515	2	FSM	ENSMUSG00000049800.14	ENSMUST00000109586.3	5515	2	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	0	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTCACAGTTTTCTTGT	NA	False	NA	17	True	AATAAA	-17	NA	20581978	20603021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_20582274_20597801
transcript_6790.known	chr11	-	3998	9	FSM	ENSMUSG00000049659.16	ENSMUST00000035350.12	3998	9	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_7	17.066048165876	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTAGCCTTTTGTCTTTGTA	9260	False	NA	NA	False	AATAAA	-16	NA	20691589	20635083	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_20636199_20642464_20642589_20648312_20648374_20653710_20653834_20658680_20658738_20659619_20659747_20662163_20662316_20675684_20677640_20691305
transcript_6791.known	chr11	-	3362	5	FSM	ENSMUSG00000042363.15	ENSMUST00000047028.9	3362	5	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_4	26.8269920043228	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGCTTCTGGGTTATTACAT	NA	False	NA	-3	True	AATAAA	-17	NA	20781056	20773575	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_20776516_20779268_20779447_20780037_20780127_20780275_20780348_20780973
transcript_6795.known	chr11	-	2683	10	FSM	ENSMUSG00000001891.17	ENSMUST00000102875.11	2683	10	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_9	120.111779214916	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTTTAAGTCTGTTT	NA	False	NA	NA	False	AATATA	-18	NA	21320477	21271137	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21303348_21303457_21304278_21304407_21320186
transcript_6796.known	chr11	-	2044	10	FSM	ENSMUSG00000001891.17	ENSMUST00000060895.6	2044	10	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_7	61.1714853284106	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGCTGTCTAGTGCTCA	NA	False	NA	-7	True	AATAAA	-21	NA	21321201	21271672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21303348_21303457_21304278_21304407_21321014
transcript_6800.nnic	chr11	-	1774	8	NNC	ENSMUSG00000001891.17	novel	2044	10	NA	NA	-6812	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_7	143.823020495642	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGCTGTCTAGTGCTCA	NA	False	NA	-7	True	AATAAA	-21	NA	21286704	21271672	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21286551
transcript_6801.nnic	chr11	-	1507	8	NNC	ENSMUSG00000001891.17	novel	2683	10	NA	NA	-6812	0	at_least_one_novel_splicesite	FALSE	canonical	3	32	junction_7	143.823020495642	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGCAGGTACTTTATTTACT	NA	False	NA	-41	True	AATAAA	-23	NA	21286704	21271939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_21272130_21273198_21273304_21278870_21279114_21279724_21279923_21280833_21281132_21282415_21282550_21283624_21283811_21286551
transcript_6805.known	chr11	-	2122	9	FSM	ENSMUSG00000020321.17	ENSMUST00000102874.11	2122	9	0	0	0	0	multi-exon	FALSE	canonical	3	1237	junction_4	96.8522553944925	1860	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAAGCTGGCTGTAATTTGCT	NA	False	NA	NA	False	AATAAA	-14	NA	21522193	21506786	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_21507569_21508461_21508552_21509191_21509306_21509698_21509876_21512864_21512988_21514040_21514217_21515823_21515921_21516619_21516719_21521729
transcript_681.known	chr1	+	1419	9	FSM	ENSMUSG00000026073.14	ENSMUST00000027243.13	1419	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.04633819296811	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGACCCATGTGGTTTCTT	NA	False	NA	NA	False	AATAAA	-20	NA	40123857	40164391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_40123980_40141548_40141698_40144423_40144683_40151114_40151296_40154183_40154359_40157114_40157178_40160068_40160205_40162281_40162425_40164200
transcript_6812.known	chr11	+	1568	4	FSM	ENSMUSG00000049904.8	ENSMUST00000059319.8	1568	4	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	9.0921211313239	31	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATGCTTATCTGTGTAGTTC	NA	False	NA	7	True	ATTAAA	-16	NA	22462087	22469234	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_22462584_22467187_22467292_22467407_22467522_22468380
transcript_6814.known	chr11	-	2602	2	FSM	ENSMUSG00000051650.12	ENSMUST00000055549.4	2602	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CATATACTAGTATCTTGTAA	3582	False	NA	-18	True	AATAAA	-18	NA	22810488	22784864	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_22787196_22810217
transcript_6815.known	chr11	-	3057	2	FSM	ENSMUSG00000051650.12	ENSMUST00000062844.11	3057	2	0	0	0	0	multi-exon	FALSE	canonical	3	288	junction_1	0	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCACGTATAATAAGTGATAC	3969	False	NA	-28	True	AATAAA	-21	NA	22810101	22784746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_22787196_22809493
transcript_6824.known	chr11	-	4508	3	FSM	ENSMUSG00000051355.19	ENSMUST00000159081.8	4508	3	0	0	0	0	multi-exon	FALSE	canonical	3	2089	junction_1	53.5	982	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAAGCTGGTTCCAGTGTGTC	NA	False	NA	NA	False	NA	NA	NA	22932382	22846135	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_22850058_22906410_22906693_22932078
transcript_6825.known	chr11	-	473	2	FSM	ENSMUSG00000051355.19	ENSMUST00000071068.9	473	2	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GTGGGTAAAAAAGAGAAACC	NA	False	NA	-31	True	AATATA	-10	NA	22932252	22849758	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_22850058_22932078
transcript_6827.known	chr11	+	2484	14	FSM	ENSMUSG00000007739.11	ENSMUST00000173867.8	2484	14	0	0	0	0	multi-exon	FALSE	canonical	3	4673	junction_2	338.771431558561	1716	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGCCAGATGTTAGGTCT	NA	False	NA	NA	False	NA	NA	NA	22940518	22953780	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_22940881_22943266_22943320_22944297_22944388_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
transcript_683.known	chr1	-	3160	6	FSM	ENSMUSG00000041945.13	ENSMUST00000039672.6	3160	6	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	1.46969384566991	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CGTGTGTGTGTGTGTCGTGT	NA	False	NA	NA	False	ATTAAA	-14	NA	40829823	40811197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_40813707_40820540_40820751_40823536_40823667_40825326_40825371_40826689_40826778_40829644
transcript_6835.known	chr11	+	1634	13	FSM	ENSMUSG00000007739.11	ENSMUST00000020562.5	1634	13	0	0	0	0	multi-exon	FALSE	canonical	2	25	junction_2	1486.11417938416	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGGATAAAAGGATGGTTG	NA	False	NA	NA	False	NA	NA	NA	22940649	22953151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_22940881_22943266_22943320_22945929_22946039_22946314_22946458_22947032_22947155_22947602_22947736_22949032_22949173_22950857_22950955_22951361_22951473_22951559_22951691_22952166_22952402_22952816_22952931_22953136
transcript_6842.nic	chr11	+	2104	6	NIC	ENSMUSG00000049811.18	novel	1947	5	NA	NA	0	0	combination_of_known_junctions	TRUE	canonical	1	1	junction_1	6.81175454637056	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACCTCAAGACATTCCT	NA	False	NA	8	True	AATAAA	-19	NA	22958464	22973730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_22958627_22963538_22963648_22965654_22965885_22969999_22971134_22971493_22971662_22973429
transcript_6843.known	chr11	+	1947	5	FSM	ENSMUSG00000049811.18	ENSMUST00000109557.10	1947	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.96419413859206	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACATTCCTGACACGGTTTG	NA	False	NA	19	True	AATAAA	-30	NA	22958464	22973741	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_22958627_22963538_22963648_22965654_22965885_22969999_22971134_22973429
transcript_6846.nnic	chr11	+	1929	5	NIC	ENSMUSG00000049811.18	novel	1947	5	NA	NA	66	0	combination_of_known_splicesites	FALSE	canonical	3	12	junction_4	2.95803989154981	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTACCTCAAGACATTCCT	NA	False	NA	8	True	AATAAA	-19	NA	22958530	22973730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_22958627_22965654_22965885_22969999_22971134_22971493_22971662_22973429
transcript_6850.known	chr11	+	5145	26	FSM	ENSMUSG00000020290.15	ENSMUST00000020538.13	5145	26	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	458.823200808329	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTCACTGTGGGGTTTAG	NA	False	NA	NA	False	NA	NA	NA	23206040	23247597	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_23206168_23206411_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
transcript_6854.known	chr11	+	6004	25	FSM	ENSMUSG00000020290.15	ENSMUST00000102869.8	6004	25	0	0	0	0	multi-exon	FALSE	canonical	2	1142	junction_7	252.998761388053	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACATCAACCAGTGCAAATTC	NA	False	NA	NA	False	AATAAA	-41	NA	23206077	23248249	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
transcript_6857.known	chr11	+	3471	26	FSM	ENSMUSG00000020290.15	ENSMUST00000102870.8	3471	26	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	458.823200808329	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATGTGTTTTTTGTAT	NA	False	NA	12	True	ATTAAA	-21	NA	23206054	23246233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_23206152_23206691_23206718_23211834_23211967_23217661_23217764_23221132_23221206_23226426_23226489_23227035_23227081_23228142_23228325_23228675_23228725_23228805_23228926_23230373_23230503_23231305_23231465_23232528_23232727_23234241_23234381_23234547_23234730_23234811_23234969_23235055_23235220_23235800_23235936_23236744_23236929_23237344_23237452_23239757_23239953_23241462_23241632_23243771_23243907_23243988_23244149_23244595_23244693_23245960
transcript_6858.nnic	chr11	+	1946	14	NIC	ENSMUSG00000056342.17	novel	12200	80	NA	NA	-4	-56616	combination_of_known_splicesites	FALSE	canonical	3	16	junction_1	6.44962271269372	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAGATGAAGAAGA	338	False	NA	NA	False	NA	NA	NA	23256911	23314036	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_23257017_23270660_23270749_23283438_23283860_23293319_23293371_23293510_23293661_23295149_23295218_23299150_23299344_23301591_23301654_23304844_23304927_23305005_23305099_23311278_23311405_23311586_23311717_23313057_23313189_23313790
transcript_6862.known	chr11	-	3023	9	FSM	ENSMUSG00000020288.14	ENSMUST00000020529.13	3023	9	0	0	0	0	multi-exon	TRUE	canonical	3	225	junction_2	27.6394193137265	68	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGGCACTGAAATCCTATTG	NA	False	NA	NA	False	AATAAA	-15	NA	23448030	23438546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_23440571_23440668_23440721_23441012_23441115_23441474_23441583_23442217_23442307_23443278_23443394_23444978_23445065_23446690_23446882_23447774
transcript_6879.known	chr11	+	3559	18	FSM	ENSMUSG00000020280.13	ENSMUST00000058163.11	3559	18	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_1	15.9356404539699	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGCATTGTTTTTTTTT	NA	False	NA	10	True	ATTAAA	-17	NA	23616006	23682876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_23616454_23617277_23617415_23622507_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678974_23679075_23681320
transcript_688.known	chr1	+	1418	11	FSM	ENSMUSG00000060679.15	ENSMUST00000057208.13	1418	11	0	0	0	0	multi-exon	FALSE	canonical	3	624	junction_3	42.3685024517034	580	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGCCCTTTTTTTTTAAA	NA	False	NA	14	True	AATAAA	-16	NA	42890392	42944842	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_42890587_42901628_42901809_42918914_42918978_42919055_42919087_42926866_42926947_42934509_42934578_42935252_42935329_42937599_42937769_42938600_42938710_42942454_42942625_42944564
transcript_6882.nic	chr11	+	3341	18	NIC	ENSMUSG00000020280.13	novel	3559	18	NA	NA	27	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_1	26.8721180155863	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGAGCATTGTTTTTTTTT	NA	False	NA	10	True	ATTAAA	-17	NA	23616214	23682876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_23616454_23617287_23617415_23622507_23622757_23623237_23623325_23649929_23649965_23652889_23653002_23656884_23656947_23657522_23657569_23658757_23658823_23661195_23661282_23662199_23662326_23667561_23667619_23668575_23668653_23668748_23668805_23670103_23670222_23675431_23675575_23678974_23679075_23681320
transcript_6883.known	chr11	-	4146	4	FSM	ENSMUSG00000020283.6	ENSMUST00000020523.4	4146	4	0	0	0	0	multi-exon	FALSE	canonical	3	429	junction_1	13.1993265821489	169	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGTACAGCCTGAATGCGT	NA	False	NA	NA	False	NA	NA	NA	23615959	23596478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_23599591_23600929_23601056_23605435_23606131_23615746
transcript_6884.known	chr11	-	3747	22	FSM	ENSMUSG00000020273.14	ENSMUST00000020513.10	3747	22	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	18.5612914946701	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCTGTCTTTAATTTTTT	1269	False	NA	-1	True	TTTAAA	-8	NA	23845253	23812645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_23814057_23816410_23816468_23816629_23816696_23817197_23817419_23817501_23817591_23817956_23818127_23818358_23818481_23820192_23820303_23820742_23820863_23822426_23822481_23823227_23823313_23823789_23823911_23824474_23824548_23826319_23826459_23829873_23829964_23832182_23832295_23834060_23834115_23835163_23835274_23835490_23835573_23840228_23840296_23841742_23841905_23845021
transcript_6886.known	chr11	+	3061	5	FSM	ENSMUSG00000000861.16	ENSMUST00000000881.13	3061	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.82915619758885	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGCGGTGTGTGCTTGTTTTT	NA	False	NA	14	True	AATAAA	-14	NA	24028055	24123194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_24028446_24035320_24035651_24108252_24108355_24113145_24114889_24122698
transcript_6888.nic	chr11	-	1827	13	NIC	ENSMUSG00000064090.15	novel	1889	13	NA	NA	-32	0	combination_of_known_junctions	FALSE	canonical	0	0	junction_12	30.8175635348128	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAACTTTTAAGCATTCC	NA	False	NA	-7	True	AATAAA	-28	NA	26543654	26421403	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543385
transcript_6889.known	chr11	-	1889	13	FSM	ENSMUSG00000064090.15	ENSMUST00000078362.13	1889	13	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_12	13.1368332899862	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAACTTTTAAGCATTCC	NA	False	NA	-7	True	AATAAA	-28	NA	26543920	26421403	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_26421787_26426553_26426701_26433157_26433325_26436959_26437019_26439772_26439894_26448916_26449050_26484210_26484304_26485536_26485643_26497838_26497927_26499294_26499365_26500025_26500076_26541586_26541728_26543589
transcript_6896.known	chr11	+	2724	14	FSM	ENSMUSG00000004018.10	ENSMUST00000004120.9	2724	14	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_1	21.2544461064019	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAGTCTAGTCATTAACACCC	NA	False	NA	13	True	AATAAA	-15	NA	26336134	26421876	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418800_26418883_26419651_26419769_26420876_26420949_26421324
transcript_692.known	chr1	+	3458	4	FSM	ENSMUSG00000010290.8	ENSMUST00000010434.8	3458	4	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_3	24.6080384337223	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGAGCAGGCCTGTCATTT	NA	False	NA	NA	False	AATAAA	-15	NA	43137869	43155107	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_43138023_43139874_43140042_43150157_43150534_43152345
transcript_6921.known	chr11	+	1187	14	FSM	ENSMUSG00000004018.10	ENSMUST00000109509.8	1187	14	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_10	68.2542237026723	144	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAAACCAATTTATTTGATG	NA	False	NA	3	True	AATAAA	-10	NA	26337201	26421421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_26337311_26347745_26347805_26349648_26349710_26353321_26353379_26357547_26357649_26372407_26372505_26384431_26384501_26409685_26409837_26418334_26418419_26418671_26418718_26418815_26418883_26419651_26419769_26420876_26420949_26421324
transcript_6922.known	chr11	+	2037	11	FSM	ENSMUSG00000020467.16	ENSMUST00000020759.12	2037	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_10	1.00498756211209	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCCATGTTTGTGTTGGT	NA	False	NA	NA	False	AATAAA	-26	NA	28803203	28876743	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_28803325_28804464_28804555_28817465_28817515_28817652_28818040_28860609_28860733_28864587_28864708_28865660_28865781_28866849_28866970_28871402_28871527_28871610_28871807_28876156
transcript_6926.known	chr11	+	2707	28	FSM	ENSMUSG00000020464.16	ENSMUST00000020756.9	2707	28	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_19	125.489275633577	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTGTGCTTGCCTACTATT	NA	False	NA	NA	False	NA	NA	NA	29080747	29111828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29103339_29104143_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
transcript_693.known	chr1	-	1563	6	FSM	ENSMUSG00000008136.15	ENSMUST00000008280.14	1563	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0.4	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTGTGTGGACTAATGAT	NA	False	NA	-2	True	AATAAA	-30	NA	43203121	43162233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_43162826_43167403_43167591_43170811_43170982_43180857_43181033_43192235_43192415_43202861
transcript_6934.known	chr11	+	3368	27	FSM	ENSMUSG00000020464.16	ENSMUST00000154924.8	3368	27	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_10	52.7864403424181	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTATTTTTATATCTTAGGA	NA	False	NA	8	True	AATAAA	-20	NA	29080743	29111680	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_29080919_29082844_29082906_29083851_29083927_29084599_29084706_29085513_29085564_29087095_29087160_29087252_29087301_29088155_29088270_29088417_29088605_29089223_29089276_29089947_29090006_29091223_29091321_29091663_29091767_29095428_29095500_29096795_29096833_29097297_29097365_29097443_29097534_29098277_29098332_29103231_29104216_29104301_29104366_29104815_29104900_29105714_29105799_29106836_29106944_29107024_29107081_29109324_29109404_29110157_29110206_29111327
transcript_6935.known	chr11	+	5125	16	FSM	ENSMUSG00000020463.16	ENSMUST00000020755.12	5125	16	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_14	38.0796825383593	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACGTGTTTTAATCACTA	NA	False	NA	23	True	AATAAA	-35	NA	29122889	29170797	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316_29159487_29161115_29161256_29161606_29161792_29163593_29163797_29168455
transcript_6939.known	chr11	+	2410	12	FSM	ENSMUSG00000020463.16	ENSMUST00000102856.9	2410	12	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_3	30.8097333552481	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTATTTTTTATTCTTACTT	NA	False	NA	NA	False	AATAAA	-19	NA	29122889	29159641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_29123448_29124672_29124729_29132446_29132546_29137950_29138575_29144572_29144651_29146173_29146291_29147092_29147210_29148792_29148925_29150700_29150804_29152866_29152909_29155545_29155705_29159316
transcript_694.known	chr1	+	2772	5	FSM	ENSMUSG00000066877.12	ENSMUST00000086421.9	2772	5	0	0	0	0	multi-exon	FALSE	canonical	3	156	junction_4	15.4757875405422	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAAGGCTGTGTGTTTGTGTT	NA	False	NA	11	True	AATAAA	-15	NA	43484910	43609675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_43485188_43548780_43548944_43572711_43572954_43593020_43593743_43608307
transcript_6940.known	chr11	-	1664	10	FSM	ENSMUSG00000020462.15	ENSMUST00000020754.10	1664	10	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_4	19.5037191768236	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTGGATGTTTTCTCTTCA	NA	False	NA	NA	False	AATAAA	-19	NA	29197409	29171531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_29171986_29172433_29172584_29172743_29172884_29175856_29175960_29179907_29179960_29180585_29180674_29184357_29184473_29194058_29194161_29195085_29195151_29197014
transcript_6947.known	chr11	-	456	3	FSM	ENSMUSG00000020462.15	ENSMUST00000144627.2	456	3	0	0	0	0	multi-exon	FALSE	canonical	3	210	junction_1	19	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTATCCATGTGTGGTTTC	NA	False	NA	NA	False	ATTAAA	-38	NA	29197068	29193823	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_29194161_29195085_29195151_29197014
transcript_6948.known	chr11	-	2126	3	FSM	ENSMUSG00000032673.6	ENSMUST00000133103.2	2126	3	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_2	1	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTTTTGGGGTTTATTTT	NA	False	NA	NA	False	AATAAA	-11	NA	29465031	29461756	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_29463677_29464431_29464523_29464916
transcript_6949.known	chr11	-	918	2	FSM	ENSMUSG00000032673.6	ENSMUST00000039900.4	918	2	0	0	0	0	multi-exon	FALSE	canonical	3	382	junction_1	0	205	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTGTGTCTTTAATTTG	NA	False	NA	-1	True	AATAAA	-23	NA	29465033	29462875	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_29463677_29464916
transcript_695.known	chr1	+	902	4	FSM	ENSMUSG00000026051.9	ENSMUST00000027217.9	902	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_3	0.816496580927726	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCATCAGAATTCACTTGGGA	NA	False	NA	NA	False	AATAAA	-22	NA	43769761	43781738	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_43770124_43776359_43776408_43777719_43777878_43781404
transcript_6955.known	chr11	+	2425	14	FSM	ENSMUSG00000020459.15	ENSMUST00000020749.13	2425	14	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	55.902387454177	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTAAATGGGCTGGAGAGAT	NA	False	NA	NA	False	NA	NA	NA	29476447	29495279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_29476488_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
transcript_696.known	chr1	-	4620	15	FSM	ENSMUSG00000057363.13	ENSMUST00000126008.8	4620	15	0	0	0	0	multi-exon	FALSE	canonical	3	170	junction_12	17.2527726254451	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTGGTAATGGTGTCACTT	NA	False	NA	NA	False	NA	NA	NA	43866960	43786125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_43789523_43792876_43792981_43794858_43794917_43796131_43796193_43799680_43799725_43804049_43804170_43810840_43810963_43813976_43814037_43819224_43819330_43829623_43829805_43836404_43836466_43844512_43844557_43844785_43844835_43846509_43846538_43866774
transcript_6960.known	chr11	+	2741	14	FSM	ENSMUSG00000020459.15	ENSMUST00000093239.11	2741	14	0	0	0	0	multi-exon	FALSE	canonical	3	166	junction_5	30.3862706462472	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAACCAAAAAAATAAAAA	NA	False	NA	NA	False	NA	NA	NA	29476456	29495248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_29476844_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
transcript_6967.nic	chr11	+	2688	14	NIC	ENSMUSG00000020459.15	novel	2741	14	NA	NA	0	173	combination_of_known_junctions	FALSE	canonical	3	10	junction_1	63.202408013447	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGTAAATATTTTCCCTTCA	NA	False	NA	6	True	NA	NA	NA	29476435	29495452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_29476566_29479928_29480155_29480580_29480693_29483225_29483398_29483831_29483993_29485089_29485267_29486832_29486973_29488668_29488794_29490067_29490273_29490608_29490862_29491340_29491482_29492344_29492510_29494269_29494411_29494912
transcript_6973.known	chr11	-	791	6	FSM	ENSMUSG00000020460.16	ENSMUST00000102845.11	791	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5362.30439270282	3455	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	-31	True	AATAAA	-16	NA	29498109	29495845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680_29497746_29497840
transcript_6978.known	chr11	-	637	5	FSM	ENSMUSG00000020460.16	ENSMUST00000102844.4	637	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	5966.04937856703	2019	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGTATTGTGCTTTATTG	NA	False	NA	-31	True	AATAAA	-16	NA	29497860	29495845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_29496030_29496290_29496423_29496702_29496789_29497205_29497261_29497680
transcript_6979.known	chr11	-	928	5	FSM	ENSMUSG00000020460.16	ENSMUST00000150739.2	928	5	0	0	0	0	multi-exon	FALSE	canonical	3	7569	junction_4	3562.36217277244	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACCAGAAGACAAGTAGT	NA	False	NA	-84	True	NA	NA	NA	29497882	29495898	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_29496030_29496290_29496423_29496702_29497261_29497680_29497746_29497840
transcript_6986.nic	chr11	+	2117	7	ISM	ENSMUSG00000020458.17	ENSMUST00000102841.8	4060	9	14333	0	-10456	0	3prime_fragment	FALSE	canonical	3	386	junction_1	197.502250338797	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29658106	29692916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_29658771_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
transcript_6989.known	chr11	+	1773	7	FSM	ENSMUSG00000020458.17	ENSMUST00000060992.6	1773	7	0	0	0	0	multi-exon	FALSE	canonical	3	50	junction_1	322.410409605866	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTTTAGTGTTTTA	NA	False	NA	14	True	AATAAA	-14	NA	29668562	29692916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_29668883_29683632_29683841_29686359_29686499_29690980_29691051_29691499_29691547_29691694_29691754_29691986
transcript_6991.known	chr11	-	863	4	FSM	ENSMUSG00000060923.6	ENSMUST00000074613.4	863	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	6.84754619472471	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTTGTGTACTGTTGCCTA	NA	False	NA	NA	False	AATAAA	-15	NA	30599587	30455990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_30456440_30582207_30582318_30583685_30583703_30599300
transcript_6998.known	chr11	+	3228	10	FSM	ENSMUSG00000020305.14	ENSMUST00000020551.13	3228	10	0	0	0	0	multi-exon	FALSE	canonical	3	71	junction_7	7.49979423586054	38	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAAGTTATTATTGTGGTTT	NA	False	NA	NA	False	TATAAA	-14	NA	30904394	31052704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_30904570_30948312_30948522_30978907_30979067_31005457_31005571_31006101_31006238_31008821_31009000_31011388_31011587_31031361_31031623_31035000_31035132_31051036
transcript_7.known	ERCC-00022	+	735	1	FSM	ERCC-00022A	DQ855004	735	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	34	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00022_+_0_700
transcript_7001.known	chr11	-	2532	14	FSM	ENSMUSG00000020311.18	ENSMUST00000073192.14	2532	14	0	0	0	0	multi-exon	TRUE	canonical	2	57	junction_8	15.3746121325012	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGGGTTCATGCTTTTGTTC	NA	False	NA	NA	False	AATAAA	-12	NA	30904152	30880773	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_30881849_30884671_30884748_30884981_30885060_30889496_30889622_30893038_30893099_30893698_30893861_30898078_30898209_30898299_30898524_30899942_30899978_30900559_30900624_30900740_30900819_30901306_30901388_30902571_30902677_30903913
transcript_7003.known	chr11	-	1315	3	FSM	ENSMUSG00000020309.7	ENSMUST00000101394.5	1315	3	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_1	6	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTCTCTAAGTGTCATTTCT	NA	False	NA	NA	False	AATAAA	-33	NA	30936350	30926706	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_30927747_30929564_30929601_30936111
transcript_7004.known	chr11	-	1018	2	FSM	ENSMUSG00000020309.7	ENSMUST00000020553.5	1018	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAAGAAATTGTACTTTTCT	NA	False	NA	NA	False	ATTAAA	-20	NA	30936334	30926951	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_30927747_30936111
transcript_7006.known	chr11	-	3940	4	FSM	ENSMUSG00000020303.3	ENSMUST00000020546.3	3940	4	0	0	0	0	multi-exon	FALSE	canonical	3	131	junction_2	14.613540144522	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATGACCTGCTCCTGAGCAG	NA	False	NA	NA	False	AATAAA	-12	NA	31320074	31307306	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_31310529_31315331_31315544_31317725_31317869_31319711
transcript_7010.nic	chr11	-	720	2	ISM	ENSMUSG00000020303.3	ENSMUST00000152094.2	447	3	-55	0	-28	0	intron_retention	FALSE	canonical	3	18	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATAATGACATTTTCTTT	NA	False	NA	NA	False	AATACA	-22	NA	31320102	31317998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_31318328_31319711
transcript_7012.known	chr11	-	1394	4	FSM	ENSMUSG00000044502.17	ENSMUST00000058060.14	1394	4	0	0	0	0	multi-exon	FALSE	canonical	3	568	junction_1	23.4141457717813	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGTTTGACGATCTTTCCC	NA	False	NA	-29	True	AATAAA	-22	NA	31621885	31615180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_31615868_31616736_31616934_31619243_31619369_31621500
transcript_7013.known	chr11	+	2000	5	FSM	ENSMUSG00000020299.7	ENSMUST00000102829.4	2000	5	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	0.707106781186548	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCATTGAGTATCCTTGGCC	2284	False	NA	NA	False	GATAAA	-14	NA	31915591	31929651	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_31915952_31923555_31923642_31925036_31925136_31926785_31926831_31928241
transcript_7016.known	chr11	+	2239	5	FSM	ENSMUSG00000020297.11	ENSMUST00000020537.9	2239	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	2.06155281280883	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCCTGACTGTCTGTCCAT	NA	False	NA	21	True	AATAAA	-17	NA	31950462	32009202	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_31950597_31951730_31951881_31967650_31967735_32005012_32005124_32007442
transcript_7018.known	chr11	+	821	5	FSM	ENSMUSG00000040767.11	ENSMUST00000039601.10	821	5	0	0	0	0	multi-exon	FALSE	canonical	3	400	junction_3	16.768646337734	486	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAATCAGAAAGCCATAGT	NA	False	NA	21	True	AATAAA	-22	NA	32155414	32158984	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_32155664_32156959_32157051_32157556_32157663_32158333_32158409_32158684
transcript_7026.known	chr11	-	2946	18	FSM	ENSMUSG00000020282.19	ENSMUST00000020524.15	2946	18	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_2	19.5534933028863	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGGATTTGTCACTGTTTC	NA	False	NA	-2	True	AATAAA	-35	NA	32172300	32159584	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_32160224_32160397_32160552_32160657_32160759_32160826_32160903_32161110_32161206_32161581_32161646_32161919_32162021_32162622_32162785_32162867_32162943_32163051_32163164_32163259_32163518_32163951_32164110_32164181_32164305_32164392_32164603_32164909_32165124_32165933_32166065_32166141_32166283_32172168
transcript_7028.known	chr11	-	2865	13	FSM	ENSMUSG00000020289.16	ENSMUST00000020530.12	2865	13	0	0	0	0	multi-exon	TRUE	canonical	3	148	junction_6	11.6770786871831	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCTGTTTGCTGAGGCTGAT	4567	False	NA	NA	False	ATTAAA	-15	NA	32217707	32181962	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_32183117_32183903_32184097_32184731_32184922_32186787_32186918_32187299_32187407_32189796_32189954_32191797_32191936_32198144_32198227_32200124_32200279_32203874_32203950_32205438_32205569_32213024_32213095_32217422
transcript_703.known	chr1	+	4649	30	FSM	ENSMUSG00000041763.15	ENSMUST00000087933.10	4649	30	0	0	0	0	multi-exon	FALSE	canonical	3	77	junction_23	82.0288369004111	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	TTTATAAATAAAAGTAAATA	3304	False	NA	-21	True	NA	NA	NA	43973166	44042131	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44024575_44024615_44029670_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478_44040599_44041263
transcript_7031.known	chr11	+	1737	4	FSM	ENSMUSG00000020287.16	ENSMUST00000020528.14	1737	4	0	0	0	0	multi-exon	FALSE	canonical	3	333	junction_1	11.8977121983832	208	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CATTGATGGCACGCGTGTGT	NA	False	NA	6	True	NA	NA	NA	32176510	32182700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_32176718_32177751_32177950_32179848_32180054_32181573
transcript_7033.nnic	chr11	+	1052	4	NNC	ENSMUSG00000020287.16	novel	1737	4	NA	NA	-8	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	161.765948895997	12	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCCAAGTCTCAGCCAGAA	NA	False	NA	25	True	AATAAA	-22	NA	32176496	32182022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_32176697_32177751_32177950_32179848_32180054_32181573
transcript_7034.known	chr11	+	699	3	FSM	ENSMUSG00000069919.8	ENSMUST00000093209.4	699	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	1	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGCCTGAGTAGGAAGA	6997	False	NA	NA	False	NA	NA	NA	32233510	32234465	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_32233802_32233923_32234129_32234262
transcript_7035.known	chr11	+	1012	3	FSM	ENSMUSG00000044949.5	ENSMUST00000051053.5	1012	3	0	0	0	0	multi-exon	FALSE	canonical	3	148	junction_1	5	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAATTACAATTTCTAATTT	4481	False	NA	NA	False	AATAAA	-29	NA	32405369	32466687	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_32405547_32449224_32449462_32466089
transcript_7036.nnic	chr11	+	768	4	NNC	ENSMUSG00000020272.9	novel	5026	19	NA	NA	26140	-1712	at_least_one_novel_splicesite	FALSE	canonical	3	27	junction_1	21.9696760710454	11	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTATTGTGATCCTTGTG	1665	False	NA	NA	False	NA	NA	NA	32564734	32572875	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_32564811_32565780_32565907_32567848_32567963_32572423
transcript_7037.nnic	chr11	-	983	4	Antisense	novelGene_ENSMUSG00000020272.9_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	0	0	junction_2	1.63299316185545	4	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTGAGAAATGCACATTACGA	NA	False	NA	NA	False	NA	NA	NA	32564693	32562190	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr11_-_32562751_32563436_32563569_32563965_32564062_32564498
transcript_7039.nnic	chr11	+	626	3	NNC	ENSMUSG00000020272.9	novel	5026	19	NA	NA	-14	-38782	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_2	15	8	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTTTTAATTTTCTGTG	NA	False	NA	NA	False	NA	NA	NA	32483290	32509746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_32483560_32505123_32505289_32509554
transcript_704.known	chr1	+	4631	29	FSM	ENSMUSG00000041763.15	ENSMUST00000188313.7	4631	29	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_23	40.426725727682	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCACAATTGGTCTTAATTT	3312	False	NA	8	True	AATAAA	-18	NA	43973174	44042160	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011689_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44029670_44029823_44030422_44030520_44031423_44031555_44038787_44038996_44040478_44040599_44041263
transcript_7063.known	chr11	-	1633	11	FSM	ENSMUSG00000057113.14	ENSMUST00000075641.10	1633	11	0	0	0	0	multi-exon	FALSE	canonical	3	16927	junction_8	1838.26714326292	587	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAAAAAACTCAGTGGATAGT	NA	False	NA	NA	False	AATACA	-9	NA	33113206	33102286	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
transcript_7064.known	chr11	-	1192	10	FSM	ENSMUSG00000057113.14	ENSMUST00000093201.13	1192	10	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_3	6125.12875954356	145	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACTGTTTCTATTTGCTTA	NA	False	NA	-32	True	AATAAA	-21	NA	33113072	33102509	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_33102853_33103985_33104061_33106002_33106105_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
transcript_7065.known	chr11	-	1157	10	FSM	ENSMUSG00000057113.14	ENSMUST00000109354.10	1157	10	0	0	0	0	multi-exon	FALSE	canonical	3	2877	junction_1	5620.63509877489	4907	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AATAAGGATGTATGTGACAA	NA	False	NA	-22	True	AATAAA	-15	NA	33113077	33104926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_33105221_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
transcript_7066.known	chr11	-	966	10	FSM	ENSMUSG00000057113.14	ENSMUST00000101375.5	966	10	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	6470.30156337304	201	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAGTTTCCTGGTGTCACTGA	NA	False	NA	-7	True	ATTAAA	-11	NA	33113076	33105327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_33105432_33106002_33106105_33106663_33106748_33106990_33107049_33109933_33109996_33110333_33110441_33110827_33110922_33111105_33111226_33111547_33111628_33112921
transcript_707.known	chr1	+	3075	24	FSM	ENSMUSG00000041763.15	ENSMUST00000188302.7	3075	24	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_13	80.9540232183447	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACTTGAAAGAAGAGTTTAC	3330	False	NA	NA	False	NA	NA	NA	43973192	44029763	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630_43995786_43996595_43996673_43999243_43999372_44000027_44000128_44008041_44008191_44009560_44009677_44010723_44010893_44011715_44011848_44012603_44012681_44014575_44014683_44016366_44016522_44017572_44017690_44017894_44017996_44019467_44019565_44020889_44021028_44022231_44022477_44022673_44022753_44029670
transcript_7074.known	chr11	-	2505	12	FSM	ENSMUSG00000069910.3	ENSMUST00000093191.3	2505	12	0	0	0	0	multi-exon	FALSE	canonical	3	139	junction_9	17.9669117367279	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATTTGTATTTTTTAAT	NA	False	NA	-7	True	AATAAA	-15	NA	34724468	34700016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_34700670_34704152_34704502_34709949_34710138_34710604_34710715_34711716_34711858_34713007_34713119_34713200_34713300_34713386_34713537_34714156_34714355_34716189_34716367_34721551_34721727_34724314
transcript_7077.nnic	chr11	-	1868	9	NNC	ENSMUSG00000069910.3	novel	2505	12	NA	NA	-19	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	57.6974869470066	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTCTATTTGTATTTTTTAAT	NA	False	NA	-7	True	AATAAA	-15	NA	34724487	34700016	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_34700670_34704152_34704285_34713007_34713119_34713200_34713300_34713386_34713537_34714156_34714355_34716189_34716367_34721551_34721727_34724314
transcript_7079.known	chr11	+	7376	7	FSM	ENSMUSG00000018846.9	ENSMUST00000018990.8	7376	7	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_4	14.5191444498481	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGTCTCCTGCTTGTTTCA	NA	False	NA	15	True	AATAAA	-17	NA	35660310	35682112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_35660775_35666912_35667266_35668393_35668648_35669402_35669580_35672410_35672535_35674274_35674401_35676234
transcript_708.known	chr1	+	1389	7	FSM	ENSMUSG00000041763.15	ENSMUST00000186028.2	1389	7	0	0	0	0	multi-exon	FALSE	canonical	3	317	junction_5	33.8070505466932	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AGAAAAAAAAAAAAAAAAGA	3312	False	NA	NA	False	AAAAAG	-23	NA	43973174	43996161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_43973414_43979269_43979399_43988471_43988568_43990266_43990372_43992416_43992542_43993736_43993901_43995630
transcript_7088.known	chr11	-	2109	15	FSM	ENSMUSG00000018848.5	ENSMUST00000018992.4	2109	15	0	0	0	0	multi-exon	FALSE	canonical	3	825	junction_11	73.3093807511866	1023	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCAGGTGTGTTTCTTTGT	NA	False	NA	-1	True	AGTAAA	-17	NA	35725333	35699207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_35699419_35699921_35700170_35700454_35700628_35706465_35706572_35707463_35707574_35708176_35708356_35710700_35710806_35711922_35712053_35715222_35715344_35716813_35716936_35717303_35717405_35718184_35718294_35719451_35719641_35723998_35724134_35725263
transcript_7096.known	chr11	-	4531	23	FSM	ENSMUSG00000018849.7	ENSMUST00000018993.7	4531	23	0	0	0	0	multi-exon	FALSE	canonical	3	205	junction_16	29.6517319327484	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTTGTCATTTGTCCC	8117	False	NA	NA	False	AATAAA	-18	NA	35871354	35729226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_35730072_35731136_35731259_35732580_35732815_35734981_35735075_35743020_35743186_35744186_35744305_35750922_35751015_35752635_35752777_35758061_35758255_35759923_35760011_35761300_35761382_35761742_35761852_35766440_35766980_35767355_35767446_35774074_35774318_35778889_35778964_35780086_35780234_35782275_35782406_35788202_35788283_35789445_35789523_35801002_35801207_35806002_35806113_35870797
transcript_7098.nnic	chr11	-	1363	5	NNC	ENSMUSG00000018849.7	novel	4531	23	NA	NA	9128	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	128.952268301104	16	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTTGTCATTTGTCCC	NA	False	NA	NA	False	AATAAA	-18	NA	35735253	35729226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_35730072_35731136_35731259_35732580_35732815_35734981_35735075_35735184
transcript_71.known	SIRV1	-	670	5	FSM	SIRV1A	SIRV105	670	5	0	0	0	0	multi-exon	FALSE	canonical	3	1547	junction_4	2187.81237769604	811	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGCCTGGAAGTCAAAAGACT	NA	False	NA	NA	False	NA	NA	NA	10640	6449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV1_-_6474_6560_6814_7552_7815_10282_10367_10593
transcript_710.known	chr1	-	2359	10	FSM	ENSMUSG00000026047.14	ENSMUST00000065767.9	2359	10	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_6	34.7545183135931	108	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATCTGGCCTCTGCCTCTG	NA	False	NA	NA	False	AATAAA	-18	NA	44157968	44145705	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152043_44152162_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
transcript_7101.nnic	chr11	-	1311	4	NNC	ENSMUSG00000018849.7	novel	4531	23	NA	NA	11294	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_3	143.815468183672	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTTGTCATTTGTCCC	NA	False	NA	NA	False	AATAAA	-18	NA	35733087	35729226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_35730072_35731136_35731259_35732580_35732815_35732977
transcript_7104.nic	chr11	-	1465	3	ISM	ENSMUSG00000018849.7	ENSMUST00000018993.7	4531	23	138276	0	11303	0	3prime_fragment	FALSE	canonical	3	308	junction_1	4	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCTTCTTGTCATTTGTCCC	NA	False	NA	NA	False	AATAAA	-18	NA	35733078	35729226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_35730072_35731136_35731259_35732580
transcript_7110.nic	chr11	-	1790	7	NIC	ENSMUSG00000042032.14	novel	2053	7	NA	NA	19	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_5	204.398032171436	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40585795	40570140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576141_40578427_40578623_40585629
transcript_7111.known	chr11	-	1949	7	FSM	ENSMUSG00000042032.14	ENSMUST00000040167.11	1949	7	0	0	0	0	multi-exon	FALSE	canonical	3	244	junction_6	119.767367100652	182	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40583601	40570140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40583304
transcript_7112.known	chr11	-	2053	7	FSM	ENSMUSG00000042032.14	ENSMUST00000101347.10	2053	7	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_6	83.011378068846	357	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACTTTGGCTTTATTTTGTA	NA	False	NA	-12	True	AATAAA	-18	NA	40586030	40570140	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_40571022_40571482_40571597_40573290_40573485_40575508_40575662_40576053_40576169_40578427_40578623_40585629
transcript_7116.nnic	chr11	-	3586	19	NNC	ENSMUSG00000020330.17	novel	3892	18	NA	NA	-38	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	157.1472239653	51	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCCAATCAGTGATTAA	NA	False	NA	-8	True	AATAAA	-17	NA	40624287	40592221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_40592459_40592802_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_7118.known	chr11	-	3892	18	FSM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	0	0	0	0	multi-exon	TRUE	canonical	3	534	junction_10	59.4855104336938	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TACACCCAATCAGTGATTAA	NA	False	NA	-8	True	AATAAA	-17	NA	40624249	40592221	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_40593686_40594608_40594763_40596718_40596896_40598176_40598277_40598391_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_7119.nic	chr11	-	2375	15	ISM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	-21	5698	-21	-5698	5prime_fragment	FALSE	canonical	3	534	junction_7	64.0654958234309	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTGATCTGTTTTAAGAAT	NA	False	NA	NA	False	AATAAA	-19	NA	40624270	40597919	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_40598277_40598391_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_712.known	chr1	-	2085	9	FSM	ENSMUSG00000026047.14	ENSMUST00000141125.8	2085	9	0	0	0	0	multi-exon	FALSE	canonical	3	275	junction_5	36.3145976158349	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTCTGTTTTGTTACAGTT	NA	False	NA	-5	True	AATAAA	-17	NA	44157913	44146044	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_44146265_44146924_44147033_44149153_44149244_44149894_44150105_44151804_44152336_44153600_44153679_44153853_44154060_44156197_44156404_44157477
transcript_7121.nic	chr11	-	2018	14	ISM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	-21	6170	-21	-6170	5prime_fragment	FALSE	canonical	3	534	junction_6	64.2459217502439	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGTCAGGCTAGACCTTG	NA	False	NA	NA	False	AAAAAG	-1	NA	40624270	40598391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_7122.nic	chr11	-	1917	14	ISM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	-36	6286	-36	-6286	5prime_fragment	FALSE	canonical	3	534	junction_6	64.2459217502439	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAGAAGAAATTAAAGAAAT	NA	False	NA	NA	False	NA	NA	NA	40624285	40598507	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_40598545_40598841_40598989_40600734_40601104_40604804_40605020_40605537_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_7123.nic	chr11	-	1421	10	ISM	ENSMUSG00000020330.17	ENSMUST00000020579.9	3892	18	-9	13017	-9	6491	5prime_fragment	FALSE	canonical	3	534	junction_2	71.1602260942008	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCAGTGTGATGATTTTAC	NA	False	NA	NA	False	NA	NA	NA	40624258	40605238	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_40605687_40606067_40606244_40606695_40606771_40612465_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_7126.known	chr11	-	1443	7	FSM	ENSMUSG00000020330.17	ENSMUST00000156399.8	1443	7	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_3	43.8203402796261	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATTCTGTTTTCCATAACT	NA	False	NA	NA	False	NA	NA	NA	40624243	40611729	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_40612567_40612656_40612744_40614224_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_7128.known	chr11	-	1080	5	FSM	ENSMUSG00000020330.17	ENSMUST00000127705.8	1080	5	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_1	36.1939221417077	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAACTAAG	NA	False	NA	NA	False	NA	NA	NA	40624243	40613663	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_40614414_40615699_40615748_40619253_40619334_40619948_40620048_40624140
transcript_7133.known	chr11	+	1577	4	FSM	ENSMUSG00000020328.11	ENSMUST00000020578.11	1577	4	0	0	0	0	multi-exon	FALSE	canonical	3	1122	junction_2	37.9326889224701	1326	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTTTACTTTTTCTTTTCT	NA	False	NA	29	True	AATAAA	-21	NA	40624493	40630873	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_40624982_40626844_40626894_40627319_40627472_40629985
transcript_7134.known	chr11	+	727	4	FSM	ENSMUSG00000020328.11	ENSMUST00000127382.2	727	4	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_2	523.696052644619	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GCCTTCATGGAAAAATATTT	NA	False	NA	-52	True	AAAAAG	-3	NA	40624772	40630377	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_40624982_40626844_40626894_40627394_40627472_40629985
transcript_7135.known	chr11	+	577	4	FSM	ENSMUSG00000020328.11	ENSMUST00000141839.2	577	4	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	492.487788906712	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTCATATTTAATTGTATTT	NA	False	NA	NA	False	NA	NA	NA	40625031	40630310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_40625083_40626844_40626894_40627319_40627472_40629985
transcript_7138.known	chr11	-	3512	6	FSM	ENSMUSG00000020326.8	ENSMUST00000020576.8	3512	6	0	0	0	0	multi-exon	FALSE	canonical	3	618	junction_3	51.9422756528822	81	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCTTCCTTGTTTTGGTTTCT	NA	False	NA	-5	True	AATAAA	-16	NA	40646138	40639378	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_40641887_40642087_40642187_40642266_40642346_40642930_40643185_40644634_40644896_40645827
transcript_7148.known	chr11	-	700	6	FSM	ENSMUSG00000020415.17	ENSMUST00000101340.11	700	6	0	0	0	0	multi-exon	FALSE	canonical	3	4089	junction_5	2240.31940579909	841	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCAGATTGTGAATACTTA	NA	False	NA	-31	True	AATAAA	-15	NA	43317029	43311095	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317000
transcript_7149.known	chr11	-	696	6	FSM	ENSMUSG00000020415.17	ENSMUST00000118368.8	696	6	0	0	0	0	multi-exon	FALSE	canonical	3	206	junction_5	3753.79296179211	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATGTTCAGATTGTGAATA	NA	False	NA	-35	True	AATAAA	-11	NA	43317044	43311099	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317015
transcript_7154.known	chr11	-	741	6	FSM	ENSMUSG00000020415.17	ENSMUST00000020687.15	741	6	0	0	0	0	multi-exon	FALSE	canonical	3	2427	junction_5	2882.94754721622	1632	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACCAACCCCTGATTGGTAT	NA	False	NA	-12	True	AATAAA	-34	NA	43317078	43311076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_43311236_43311933_43312093_43313719_43313814_43315545_43315725_43316409_43316509_43317027
transcript_7155.nic	chr11	+	2067	17	NIC	ENSMUSG00000020409.11	novel	3625	16	NA	NA	-18	926	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	62.6749738232893	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTCTTCTCAACAGTCAAGAA	NA	False	NA	14	True	AATAAA	-19	NA	43324552	43337138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_43324647_43327180_43327260_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
transcript_7157.nic	chr11	+	2791	17	NIC	ENSMUSG00000020409.11	novel	3625	16	NA	NA	-18	-946	combination_of_known_junctions	FALSE	canonical	3	72	junction_1	62.6749738232893	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CGTTGGATTTTCGTACACTT	NA	False	NA	14	True	AATAAA	-25	NA	43324552	43337862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_43324647_43327180_43327260_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
transcript_7161.known	chr11	+	3625	16	FSM	ENSMUSG00000020409.11	ENSMUST00000020681.10	3625	16	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_1	28.1705914425349	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCATGAGTTGTTTGAAGT	NA	False	NA	NA	False	AATAAA	-20	NA	43324585	43338808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_43324647_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185_43336300_43336838
transcript_7164.known	chr11	+	1662	16	FSM	ENSMUSG00000020409.11	ENSMUST00000151880.8	1662	16	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	64.5679659136187	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAGAAGAAGAAAAAGAAGAA	NA	False	NA	NA	False	NA	NA	NA	43324570	43336212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_43324647_43327180_43327260_43328171_43328358_43328949_43329104_43329630_43329712_43329979_43330145_43331437_43331507_43332047_43332096_43332272_43332405_43332649_43332748_43332857_43332926_43333366_43333507_43334100_43334263_43335552_43335658_43336010_43336083_43336185
transcript_7166.known	chr11	-	1438	8	FSM	ENSMUSG00000041278.11	ENSMUST00000048578.3	1438	8	0	0	0	0	multi-exon	FALSE	canonical	3	649	junction_5	59.12318513416	758	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGTTGGGGACTATGTTGT	NA	False	NA	-10	True	AATAAA	-12	NA	43638809	43620835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_43621435_43627245_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911_43636275_43638748
transcript_7167.known	chr11	-	501	2	FSM	ENSMUSG00000041278.11	ENSMUST00000147984.2	501	2	0	0	0	0	multi-exon	FALSE	canonical	3	777	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGGTCTCTCGGCGTCCTCT	NA	False	NA	73	True	NA	NA	NA	43638819	43635844	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_43636275_43638748
transcript_7168.known	chr11	-	1965	8	FSM	ENSMUSG00000041278.11	ENSMUST00000109278.8	1965	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	255.299184231732	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAAAGTTTCTGTACAACTTG	NA	False	NA	NA	False	NA	NA	NA	43638835	43620338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_43621435_43627241_43627301_43628693_43628843_43629623_43629661_43630543_43630657_43632587_43632649_43635911_43636275_43638748
transcript_7169.nnic	chr11	-	2060	11	NNC	ENSMUSG00000041231.16	novel	2088	11	NA	NA	9	0	intron_retention	FALSE	canonical	2	8	junction_10	71.3344236676795	31	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGGTTATCTGTTTTATA	NA	False	NA	NA	False	AATAAA	-16	NA	44361316	44345399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_44346443_44347190_44347319_44349031_44349149_44351547_44351647_44352145_44352184_44354484_44354584_44356191_44356308_44356384_44356471_44356822_44356915_44357641_44357822_44361254
transcript_717.known	chr1	-	1272	8	FSM	ENSMUSG00000026049.12	ENSMUST00000027215.12	1272	8	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	186.541782812039	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCCTTTGTTTTACTCT	NA	False	NA	0	True	ATTAAA	-20	NA	44141551	44125772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44140626_44140683_44141059_44141118_44141487
transcript_7170.known	chr11	-	2088	11	FSM	ENSMUSG00000041231.16	ENSMUST00000102795.4	2088	11	0	0	0	0	multi-exon	FALSE	canonical	2	61	junction_9	50.7897627480184	169	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGTTATCTGTTTTATAAT	NA	False	NA	NA	False	AATAAA	-18	NA	44361325	44345397	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_44346443_44347190_44347319_44349031_44349149_44351547_44351647_44352145_44352184_44354484_44354584_44356191_44356308_44356384_44356471_44356822_44356915_44357641_44357839_44361254
transcript_7179.known	chr11	-	2250	6	FSM	ENSMUSG00000011254.17	ENSMUST00000011398.13	2250	6	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_3	12.8	121	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGGTTCCTACAGAATGAGT	6301	False	NA	NA	False	AATAAA	-26	NA	45846321	45837669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_45839156_45841022_45841131_45842369_45842459_45843561_45843732_45844882_45845060_45846101
transcript_7188.known	chr11	-	784	2	FSM	ENSMUSG00000069899.4	ENSMUST00000154156.2	784	2	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	TAAAAAAAAAAAAAAGAGAC	1787	False	NA	NA	False	AATAAA	-16	NA	45943148	45942194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_45942889_45943058
transcript_7189.known	chr11	-	958	1	FSM	ENSMUSG00000069899.4	ENSMUST00000093169.3	958	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	197	NA	NA	NA	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AGAGACAGAGAGAGAGAGAA	1797	False	NA	NA	False	AATAAA	-30	NA	45943138	45942180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_45942200_45943100
transcript_7190.nic	chr11	+	1024	7	ISM	ENSMUSG00000011256.17	ENSMUST00000011400.8	6383	23	17	33405	17	-23710	5prime_fragment	FALSE	canonical	3	440	junction_1	21.4916004264198	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAACAGCAAAAAGCCAAG	NA	False	NA	NA	False	TTTAAA	-19	NA	45946835	46004765	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_45947038_45951749_45951836_45955838_45955910_45984689_45984769_45990679_45990757_46003583_46003777_46004449
transcript_7191.nic	chr11	-	3314	24	ISM	ENSMUSG00000020340.17	ENSMUST00000093166.11	6298	31	35398	2216	-6227	0	3prime_fragment	FALSE	canonical	3	87	junction_12	13.4680185487506	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACAGGGCAGTGTGTGCTTT	NA	False	NA	NA	False	AATGAA	-18	NA	46167723	46086897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_46087295_46089817_46089966_46091472_46091712_46098213_46098309_46099114_46099188_46112162_46112294_46113436_46113528_46114888_46115033_46130830_46130919_46133113_46133314_46138385_46138506_46140556_46140666_46143430_46143508_46144773_46144871_46145336_46145494_46148375_46148530_46151626_46151775_46152263_46152431_46156730_46156857_46157536_46157657_46161378_46161497_46163435_46163528_46165464_46165570_46167605
transcript_7192.nnic	chr11	+	1166	4	NNC	ENSMUSG00000020397.16	novel	1193	3	NA	NA	-15	0	at_least_one_novel_splicesite	TRUE	canonical	3	45	junction_2	207.467802053449	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAATTGTCATTCTTGGA	NA	False	NA	12	True	AATAAA	-14	NA	46327736	46332354	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_46327837_46330632_46330652_46330720_46330803_46331389
transcript_7194.known	chr11	+	331	4	FSM	ENSMUSG00000020397.16	ENSMUST00000140027.8	331	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	221.568650008675	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGGCATTGAACGGCTTCATC	NA	False	NA	NA	False	NA	NA	NA	46327775	46331591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_46327837_46330632_46330652_46330753_46330803_46331389
transcript_7195.nnic	chr11	+	1314	4	NNC	ENSMUSG00000020397.16	novel	2547	3	NA	NA	-5	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_2	200.899643271626	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAATTGTCATTCTTGGA	NA	False	NA	12	True	AATAAA	-14	NA	46327770	46332354	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_46328019_46330632_46330652_46330720_46330803_46331389
transcript_7200.known	chr11	+	1193	3	FSM	ENSMUSG00000020397.16	ENSMUST00000020665.13	1193	3	0	0	0	0	multi-exon	FALSE	canonical	3	177	junction_1	179.5	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACGAATTGTCATTCTTGGA	NA	False	NA	12	True	AATAAA	-14	NA	46327778	46332354	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_46327837_46330632_46330803_46331389
transcript_7202.known	chr11	+	2547	3	FSM	ENSMUSG00000020397.16	ENSMUST00000109232.4	2547	3	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_1	137	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATCCAGGAATTTTGTGAG	NA	False	NA	NA	False	NA	NA	NA	46327800	46333548	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_46328019_46330632_46330803_46331389
transcript_7208.known	chr11	+	381	2	FSM	ENSMUSG00000020397.16	ENSMUST00000152119.2	381	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GACATCTTAATAAGAAGTCC	NA	False	NA	NA	False	NA	NA	NA	46327751	46331685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_46327837_46331389
transcript_721.known	chr1	-	935	7	FSM	ENSMUSG00000026049.12	ENSMUST00000133677.8	935	7	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_5	163.292596960861	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTACGGTTGGTTAATTTGAT	NA	False	NA	NA	False	AATAAA	-2	NA	44141583	44126019	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139096_44141059_44141118_44141487
transcript_7210.known	chr11	+	702	2	FSM	ENSMUSG00000020397.16	ENSMUST00000128940.2	702	2	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GAACGAGTCATTGAAATGAT	NA	False	NA	NA	False	NA	NA	NA	46327804	46331877	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_46328019_46331389
transcript_7221.known	chr11	+	1447	8	FSM	ENSMUSG00000020372.16	ENSMUST00000020640.8	1447	8	0	0	0	0	multi-exon	FALSE	canonical	1	1907	junction_2	1651.73542626153	8098	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAACCCACCTTTCCCCAAG	NA	False	NA	NA	False	AATAAA	-23	NA	48691186	48697261	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_48691400_48692489_48692662_48693099_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
transcript_7228.known	chr11	+	1542	7	FSM	ENSMUSG00000020372.16	ENSMUST00000139959.8	1542	7	0	0	0	0	multi-exon	FALSE	canonical	3	5433	junction_6	484.72730019626	329	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGCTTCTATATGTGAGTC	NA	False	NA	23	True	AATAAA	-15	NA	48691183	48696915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_48691400_48692489_48693248_48694230_48694327_48694684_48694796_48694982_48695124_48696371_48696483_48696806
transcript_7234.known	chr11	-	3432	6	FSM	ENSMUSG00000040365.15	ENSMUST00000047145.14	3432	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_5	5.01996015920445	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTGGACTCTTTTA	NA	False	NA	-25	True	AATAAA	-18	NA	48708180	48697230	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_48698674_48698951_48699080_48699291_48699315_48699876_48700108_48703126_48703223_48706669
transcript_7238.known	chr11	-	1310	1	FSM	ENSMUSG00000078154.4	ENSMUST00000104959.2	1310	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GAAAGAGTGTAAGAAGGTTA	NA	False	NA	NA	False	AATAAA	-27	NA	48717482	48716172	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_48716200_48717500
transcript_7239.known	chr11	-	837	1	FSM	ENSMUSG00000078153.4	ENSMUST00000104958.2	837	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAAAAAGAAAGAAATAC	1535	False	NA	NA	False	AATAAA	-22	NA	48837017	48836180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_48836200_48837000
transcript_724.nic	chr1	-	1310	7	NIC	ENSMUSG00000026049.12	novel	1272	8	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	3	144	junction_6	127.50348579113	94	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCCTTTGTTTTACTCT	NA	False	NA	0	True	ATTAAA	-20	NA	44141645	44125772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141059_44141118_44141487
transcript_7240.known	chr11	+	3872	4	FSM	ENSMUSG00000046311.14	ENSMUST00000109198.8	3872	4	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_1	17.4547032821147	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAAAGGATGGCTTTTTATT	1166	False	NA	NA	False	AATAAA	-12	NA	49094118	49109380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_49094366_49103521_49103604_49104416_49104470_49105890
transcript_7241.known	chr11	+	633	3	FSM	ENSMUSG00000020346.17	ENSMUST00000156607.8	633	3	0	0	0	0	multi-exon	TRUE	canonical	3	30	junction_1	30.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATGCTGAAGAAGCAGACTGC	NA	False	NA	NA	False	NA	NA	NA	49136057	49151518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_49136445_49142376_49142502_49151397
transcript_7242.known	chr11	+	2729	3	FSM	ENSMUSG00000020346.17	ENSMUST00000101293.11	2729	3	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	25.5	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGTGTGTGTGTCCTAGG	NA	False	NA	NA	False	AATAAA	-27	NA	49141338	49153857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_49141483_49142376_49142502_49151397
transcript_7243.known	chr11	+	2976	3	FSM	ENSMUSG00000020346.17	ENSMUST00000081794.7	2976	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_1	11	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAAGTGTGTGTGTGTGTCCT	NA	False	NA	NA	False	AATAAA	-24	NA	49135072	49153854	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_49135167_49136019_49136445_49151397
transcript_7244.known	chr11	-	5736	12	FSM	ENSMUSG00000020362.14	ENSMUST00000145353.8	5736	12	0	0	0	0	multi-exon	TRUE	canonical	3	61	junction_7	45.9026998251701	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTAAAAGTGTAGTTTG	NA	False	NA	-10	True	AATAAA	-19	NA	49603550	49562329	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_49566233_49568126_49568330_49570747_49570979_49571967_49572123_49572865_49573021_49573951_49574110_49575913_49575983_49576074_49576180_49577673_49577760_49579991_49580179_49593367_49593482_49603180
transcript_7245.known	chr11	-	2498	12	FSM	ENSMUSG00000020362.14	ENSMUST00000020624.7	2498	12	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_7	24.0849049121664	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAGCAAA	NA	False	NA	NA	False	NA	NA	NA	49603537	49565539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_49566233_49568126_49568330_49570747_49570979_49571967_49572123_49572865_49573021_49573951_49574110_49575913_49575983_49576089_49576180_49577673_49577760_49579991_49580179_49593367_49593482_49603180
transcript_7246.known	chr11	-	348	1	FSM	ENSMUSG00000083061.2	ENSMUST00000118307.2	348	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	817	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACAAGAAAGTTTTCCTTTAA	NA	False	NA	NA	False	NA	NA	NA	49569884	49569536	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_49569500_49569900
transcript_7249.known	chr11	+	2947	19	FSM	ENSMUSG00000020363.7	ENSMUST00000020629.5	2947	19	0	0	0	0	multi-exon	FALSE	canonical	2	320	junction_10	53.5808204583287	130	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCCGACTTGTTTGAATT	NA	False	NA	27	True	AATAAA	-17	NA	49685013	49729440	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_49685071_49695778_49695887_49698521_49698621_49699860_49699987_49701790_49701850_49702496_49702632_49706106_49706169_49709406_49709487_49709963_49710082_49714038_49714203_49714560_49714657_49714767_49714866_49715158_49715280_49717570_49717729_49717957_49718073_49720566_49720695_49723687_49723856_49726438_49726601_49728547
transcript_7256.known	chr11	+	4677	12	FSM	ENSMUSG00000020366.19	ENSMUST00000178543.8	4677	12	0	0	0	0	multi-exon	FALSE	canonical	3	70	junction_7	121.043192891854	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTACTTGTGGTTTTG	NA	False	NA	14	True	NA	NA	NA	49737577	49777248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49759998_49760138_49763560_49763727_49764662_49764735_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773973
transcript_7257.known	chr11	+	4675	12	FSM	ENSMUSG00000020366.19	ENSMUST00000020634.14	4675	12	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_7	40.7615521322656	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGTGTACTTGTGGTTTTG	NA	False	NA	14	True	NA	NA	NA	49737579	49777248	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_49737803_49745039_49745210_49754370_49754501_49757809_49757869_49759998_49760138_49763560_49763727_49765090_49765163_49769057_49769241_49770528_49770654_49772045_49772110_49772957_49773027_49773973
transcript_7259.known	chr11	+	1502	9	FSM	ENSMUSG00000020376.18	ENSMUST00000102776.5	1502	9	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_8	44.3931300991494	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTTCGCCAGCGTGTGTTT	NA	False	NA	24	True	NA	NA	NA	49916174	49995580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_49916475_49943602_49943798_49961997_49962249_49976567_49976640_49978205_49978289_49984549_49984647_49986602_49986808_49990072_49990167_49995375
transcript_7260.known	chr11	+	4407	21	FSM	ENSMUSG00000036644.16	ENSMUST00000093138.13	4407	21	0	0	0	0	multi-exon	TRUE	canonical	3	113	junction_18	14.0538251020852	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACACTGTGTGCAGTGCTT	NA	False	NA	7	True	AATAAA	-20	NA	50022222	50062857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_50022384_50026651_50026763_50031209_50031329_50035853_50036083_50036929_50037189_50038847_50039056_50040528_50040742_50042145_50042308_50042748_50042900_50043450_50043666_50045912_50046031_50047571_50047858_50049243_50049374_50049488_50049588_50050469_50050539_50052281_50052523_50052872_50052939_50054651_50054724_50058995_50059053_50059522_50059630_50061523
transcript_7263.nnic	chr11	+	1272	8	NNC	ENSMUSG00000020381.11	novel	1142	7	NA	NA	-47	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	76.9099659156267	8	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCTTGCTGCTACACTC	NA	False	NA	7	True	AATAAA	-17	NA	50065628	50090942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_50065779_50067653_50067714_50073318_50073408_50082029_50082113_50085034_50085111_50087770_50087920_50088445_50088531_50090362
transcript_7264.known	chr11	-	2037	8	FSM	ENSMUSG00000015837.16	ENSMUST00000102774.11	2037	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	263.494104027287	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCCTGTGATCCGTACGAGT	NA	False	NA	-14	True	AATAAA	-22	NA	50101654	50090978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_50091775_50093225_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
transcript_7265.known	chr11	-	2673	8	FSM	ENSMUSG00000015837.16	ENSMUST00000015981.12	2673	8	0	0	0	0	multi-exon	TRUE	canonical	3	390	junction_1	128.516496201532	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACCATTGAGTGAGCCATCT	NA	False	NA	NA	False	TATAAA	-11	NA	50101618	50090192	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_50091775_50093339_50093422_50093640_50093862_50096849_50096931_50097986_50098129_50098233_50098464_50098647_50098744_50101379
transcript_7266.known	chr11	+	1142	7	FSM	ENSMUSG00000020381.11	ENSMUST00000020647.10	1142	7	0	0	0	0	multi-exon	FALSE	canonical	3	161	junction_2	8.63616427202108	123	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCCTCTTGCTGCTACACTC	NA	False	NA	7	True	AATAAA	-17	NA	50065675	50090942	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_50065779_50067653_50067714_50073318_50073408_50085034_50085111_50087770_50087920_50088445_50088531_50090362
transcript_7269.known	chr11	-	649	5	FSM	ENSMUSG00000020377.16	ENSMUST00000102772.4	649	5	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_4	0.82915619758885	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCCGTCTGCATTCTCTGGG	NA	False	NA	NA	False	ATTAAA	-14	NA	50129359	50127298	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_50127540_50127843_50127926_50128020_50128092_50128167_50128268_50129204
transcript_7271.known	chr11	-	3779	15	FSM	ENSMUSG00000020368.16	ENSMUST00000020637.9	3779	15	0	0	0	0	multi-exon	FALSE	canonical	3	3893	junction_7	208.647160908319	214	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACATGTCTGCAGGTTTCTC	8136	False	NA	-54	True	AATAAA	-22	NA	50216500	50185293	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216319
transcript_7276.nnic	chr11	-	3258	15	NNC	ENSMUSG00000020368.16	novel	3779	15	NA	NA	-1	-486	at_least_one_novel_splicesite	FALSE	canonical	3	418	junction_14	996.986871241829	22	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTTTTTTTGTGGCTTGTA	8135	False	NA	-2	True	AATAAA	-23	NA	50216501	50185779	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_50187163_50187884_50187965_50188100_50188222_50188943_50189064_50189955_50190172_50191724_50191882_50192584_50192699_50195152_50195343_50198296_50198490_50199136_50199219_50199614_50199757_50201198_50201258_50201620_50201695_50202430_50202612_50216355
transcript_728.nic	chr1	-	1140	6	NIC	ENSMUSG00000026049.12	novel	935	7	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_5	156.042814637522	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCCTTTGTTTTACTCT	NA	False	NA	0	True	ATTAAA	-20	NA	44141599	44125772	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139096_44141487
transcript_7283.known	chr11	+	2225	14	FSM	ENSMUSG00000007850.17	ENSMUST00000069304.14	2225	14	0	0	0	0	multi-exon	TRUE	canonical	3	130	junction_1	115.462537790991	67	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACACTCTGTCTGTGCTTTAG	NA	False	NA	NA	False	AATAAA	-18	NA	50268545	50277354	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50275967_50276018_50276603
transcript_7287.known	chr11	+	2126	13	FSM	ENSMUSG00000007850.17	ENSMUST00000077817.8	2126	13	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_12	133.956356906104	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACTCTGTCTGTGCTTTAGT	NA	False	NA	NA	False	AATAAA	-19	NA	50268595	50277355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_50268630_50269117_50269255_50270294_50270451_50270647_50270792_50272285_50272425_50273363_50273543_50273626_50273699_50273754_50273889_50274005_50274142_50274506_50274567_50274657_50274748_50275470_50275564_50276603
transcript_729.known	chr1	-	960	6	FSM	ENSMUSG00000026049.12	ENSMUST00000150911.8	960	6	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_5	82.045353311446	233	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGTACGGTTGGTTAATTTGA	NA	False	NA	NA	False	AATAAA	-1	NA	44141601	44126020	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141487
transcript_7293.nic	chr11	-	2480	18	NIC	ENSMUSG00000020375.10	novel	2688	18	NA	NA	-58	0	combination_of_known_junctions	FALSE	canonical	3	21	junction_17	12.7347167373532	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGCCTCCAGCTTGCT	747	False	NA	0	True	AATAAA	-32	NA	50312876	50280112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_50280786_50281120_50281199_50282845_50282895_50285747_50285843_50288470_50288601_50289197_50289318_50292264_50292363_50295280_50295449_50297193_50297311_50298649_50298752_50301392_50301463_50305343_50305410_50307066_50307129_50308010_50308135_50310447_50310550_50311203_50311322_50312456_50312631_50312742
transcript_7294.known	chr11	-	2688	18	FSM	ENSMUSG00000020375.10	ENSMUST00000020643.4	2688	18	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_10	7.873128931343	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCTGGCCTCCAGCTTGCT	4149	False	NA	0	True	AATAAA	-32	NA	50321952	50280112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_50280786_50281120_50281199_50282845_50282895_50285747_50285843_50288470_50288601_50289197_50289318_50292264_50292363_50295280_50295449_50297193_50297311_50298649_50298752_50301392_50301463_50305343_50305410_50307066_50307129_50308010_50308135_50310447_50310550_50311203_50311322_50312456_50312631_50321610
transcript_7295.known	chr11	-	5325	5	FSM	ENSMUSG00000044807.14	ENSMUST00000109135.9	5325	5	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_4	5.87367006223537	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATTTATAAAGTGGTGAATGT	330	False	NA	NA	False	AATAAA	-17	NA	50718517	50701912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_50706821_50707945_50708039_50708635_50708763_50717252_50717338_50718405
transcript_7297.known	chr11	-	2059	6	FSM	ENSMUSG00000048728.16	ENSMUST00000050595.13	2059	6	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_5	5.56417109729742	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAATTTGTTTCTTTTTTT	NA	False	NA	-1	True	ATTAAA	-26	NA	50778270	50763546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_50765115_50768869_50768933_50774010_50774104_50774511_50774639_50777195_50777326_50778192
transcript_7298.known	chr11	-	2090	6	FSM	ENSMUSG00000048728.16	ENSMUST00000163301.8	2090	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_3	3.42928563989645	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACAATTTGTTTCTTTTTTT	NA	False	NA	-1	True	ATTAAA	-26	NA	50778328	50763546	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_50765115_50768869_50768933_50774010_50774104_50774511_50774639_50777195_50777326_50778219
transcript_7300.known	chr11	-	3069	6	FSM	ENSMUSG00000049321.18	ENSMUST00000116378.8	3069	6	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	26.1763251813542	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTGCCTTGGTCATGGTATT	NA	False	NA	0	True	NA	NA	NA	50806969	50789538	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_50792119_50796912_50796985_50801262_50801353_50801532_50801704_50803106_50803229_50806935
transcript_7303.known	chr11	-	539	5	FSM	ENSMUSG00000049321.18	ENSMUST00000151027.2	539	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_2	29.0172362570938	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTAAGTTCTTTAATGGTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	50806961	50796816	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_50796985_50801262_50801356_50801576_50801704_50803106_50803232_50806935
transcript_7305.known	chr11	+	2592	5	FSM	ENSMUSG00000020364.15	ENSMUST00000102766.10	2592	5	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	1.29903810567666	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGATAGTCCACCTAGTTAT	NA	False	NA	NA	False	AATAAA	-28	NA	50950083	50962189	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_50950230_50950898_50950982_50951686_50951814_50952229_50952326_50960049
transcript_7308.known	chr11	+	4165	5	FSM	ENSMUSG00000020364.15	ENSMUST00000109122.8	4165	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	2.77263412660235	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCACATTTCTTCCTGCTAA	NA	False	NA	NA	False	AATAAA	-22	NA	50950120	50963626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_50950230_50950612_50950869_50951686_50951814_50952229_50952326_50960049
transcript_7312.nnic	chr11	-	1758	6	NNC	ENSMUSG00000086646.8	novel	937	5	NA	NA	-33	55141	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_1	9.80612053770501	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTTTTAAAAGATTTATTTA	NA	False	NA	NA	False	AATAAA	-12	NA	51111278	51025518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_51026043_51077320_51077852_51080756_51081139_51089402_51089544_51110284_51110381_51111194
transcript_7314.known	chr11	-	937	5	FSM	ENSMUSG00000086646.8	ENSMUST00000143209.8	937	5	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_3	6.29980158417708	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATAATTGATTCTGTATGT	NA	False	NA	NA	False	NA	NA	NA	51111245	51080659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_51081139_51089402_51089544_51104871_51105042_51110284_51110381_51111194
transcript_7318.nic	chr11	+	2014	14	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	9	junction_3	53.6563688406117	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153910	51172591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_51154097_51157997_51158159_51158991_51159059_51161363_51161423_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
transcript_7319.nnic	chr11	+	1956	14	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	2	0	combination_of_known_splicesites	FALSE	canonical	3	35	junction_4	49.8634822681421	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153992	51172591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
transcript_7321.nnic	chr11	+	1947	13	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-30	0	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	39.9666527661916	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153910	51172591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
transcript_7322.known	chr11	+	1949	13	FSM	ENSMUSG00000020385.17	ENSMUST00000093132.13	1949	13	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_3	48.5840480221875	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153940	51172591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_51154097_51157997_51158159_51162626_51162850_51163904_51163996_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
transcript_7323.nic	chr11	+	1888	12	NIC	ENSMUSG00000020385.17	novel	1949	13	NA	NA	-30	0	combination_of_known_junctions	FALSE	canonical	3	62	junction_2	35.3321898042513	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCACTTTGTGATTGAGTATT	NA	False	NA	13	True	AGTAAA	-13	NA	51153910	51172591	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_51154097_51157997_51158159_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
transcript_7325.known	chr11	+	1627	11	FSM	ENSMUSG00000020385.17	ENSMUST00000109113.8	1627	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	50.5050492525252	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACTTTGTGATTGAGTATTCT	NA	False	NA	15	True	AGTAAA	-15	NA	51154012	51172593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_51154097_51162626_51162850_51164386_51164454_51166037_51166155_51166238_51166406_51166596_51166692_51166944_51167075_51168679_51168763_51171184_51171265_51171935_51172027_51172103
transcript_7327.nnic	chr11	+	1419	4	NIC	ENSMUSG00000020385.17	novel	742	7	NA	NA	-30	448	combination_of_known_splicesites	FALSE	canonical	3	44	junction_2	34.3737626039914	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CAATTGTGTTGTTTTTTTCT	NA	False	NA	NA	False	ATTAAA	-18	NA	51153910	51163639	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_51154097_51157997_51158159_51161363_51161423_51162626
transcript_7328.known	chr11	+	442	2	FSM	ENSMUSG00000020385.17	ENSMUST00000133200.2	442	2	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTCTGGGATTGATAGGAGA	NA	False	NA	NA	False	ACTAAA	-30	NA	51153988	51158331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_51154097_51157997
transcript_7329.nic	chr11	-	638	2	ISM	ENSMUSG00000045942.14	ENSMUST00000231433.2	855	4	1670	-142	1670	0	3prime_fragment	FALSE	canonical	2	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACTCTCTCCTGCCTCATTTT	NA	False	NA	NA	False	AATAAA	-14	NA	51145421	51144477	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_51144880_51145185
transcript_7331.known	chr11	+	3116	13	FSM	ENSMUSG00000020359.14	ENSMUST00000167797.8	3116	13	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	4.87054639873415	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGTTCAACTTGGGATCTA	NA	False	NA	NA	False	AATAAA	-16	NA	51475583	51495316	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_51475707_51476340_51476460_51477387_51477548_51482225_51482301_51482832_51482921_51482995_51483113_51484430_51484514_51484742_51484969_51489102_51489258_51489477_51489568_51490292_51490424_51491395_51491450_51493621
transcript_7343.known	chr11	-	1946	10	FSM	ENSMUSG00000001054.10	ENSMUST00000001081.10	1946	10	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_3	13.1581078605222	206	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCAATGATTGCATGGTCTT	NA	False	NA	-9	True	AATATA	-19	NA	51526723	51514499	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_51514974_51515055_51515211_51515301_51515405_51516495_51516662_51517562_51517730_51517825_51517927_51518448_51518590_51518706_51518853_51520302_51520489_51526416
transcript_7349.known	chr11	+	1042	4	FSM	ENSMUSG00000001056.4	ENSMUST00000127405.2	1042	4	0	0	0	0	multi-exon	FALSE	canonical	3	5273	junction_1	70.8723421998235	3503	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCATTCAGTTCTAACGGGT	NA	False	NA	NA	False	TATAAA	-3	NA	51510561	51514541	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_51510805_51510908_51510979_51513311_51513418_51513918
transcript_7351.known	chr11	+	825	3	FSM	ENSMUSG00000001056.4	ENSMUST00000001083.4	825	3	0	0	0	0	multi-exon	FALSE	canonical	3	5400	junction_2	19.5	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAACGTGGCAAGTGTGTGG	NA	False	NA	16	True	AGTAAA	-11	NA	51510597	51514256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_51510979_51513311_51513418_51513918
transcript_7352.known	chr11	-	2367	5	FSM	ENSMUSG00000001053.16	ENSMUST00000001080.16	2367	5	0	0	0	0	multi-exon	FALSE	canonical	3	337	junction_4	13.2382022948737	61	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGGAGGAATGTTATTC	NA	False	NA	0	True	AATATA	-32	NA	51541669	51533889	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_51534976_51535101_51535357_51535999_51536513_51536753_51537102_51541504
transcript_7354.known	chr11	-	813	2	FSM	ENSMUSG00000007777.10	ENSMUST00000007921.9	813	2	0	0	0	0	multi-exon	FALSE	canonical	3	574	junction_1	0	214	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTATGTGTATGAATGCT	5184	False	NA	-12	True	ATTAAA	-14	NA	51579480	51576212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_51576920_51579374
transcript_7355.known	chr11	-	2094	11	FSM	ENSMUSG00000036391.17	ENSMUST00000109092.8	2094	11	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	19.6611291639112	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTTGTTTTGTTTTTTTCAG	3780	False	NA	NA	False	AATAAA	-14	NA	51647258	51612516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_51612761_51614410_51614524_51617311_51617422_51620278_51620403_51622629_51622733_51624218_51624392_51624596_51624755_51625410_51625489_51627177_51627349_51634362_51634828_51646903
transcript_7357.known	chr11	-	4273	3	FSM	ENSMUSG00000036391.17	ENSMUST00000154325.2	4273	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	41.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	ACAAATAAAAAGGAAGGGAA	NA	False	NA	NA	False	NA	NA	NA	51654461	51631388	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_51634828_51646903_51647662_51654385
transcript_7358.known	chr11	+	1201	7	FSM	ENSMUSG00000020386.6	ENSMUST00000020653.6	1201	7	0	0	0	0	multi-exon	FALSE	canonical	3	666	junction_5	46.9006041183551	381	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTCAGTGTTGGGCAGCTGT	3565	False	NA	12	True	AATAAA	-18	NA	51654513	51682752	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_51654619_51668313_51668389_51670515_51670636_51673598_51673665_51678976_51679081_51680023_51680156_51682153
transcript_736.known	chr1	-	1122	6	FSM	ENSMUSG00000026049.12	ENSMUST00000156392.8	1122	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	166.814148081031	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAATGGTGCCTTTGTTTTAC	NA	False	NA	-3	True	ATTAAA	-17	NA	44141598	44125775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139082_44141487
transcript_7362.nnic	chr11	+	1337	4	NNC	ENSMUSG00000020392.9	novel	637	4	NA	NA	-41	-2	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_3	504.667107001129	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAAGTTAGGTTCAAGTTGT	NA	False	NA	NA	False	AATAAA	-18	NA	51858446	51868159	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_51858785_51860970_51861071_51866726_51867028_51867561
transcript_7363.known	chr11	+	1832	3	FSM	ENSMUSG00000020392.9	ENSMUST00000102763.5	1832	3	0	0	0	0	multi-exon	FALSE	canonical	3	1066	junction_1	20	659	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGTTAGGTTCAAGTTGTGT	NA	False	NA	NA	False	AATAAA	-20	NA	51858487	51868161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_51858785_51860970_51861071_51866726
transcript_7365.known	chr11	-	585	7	FSM	ENSMUSG00000020390.13	ENSMUST00000109086.8	585	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_6	225.904662782039	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCATCCTTCATCGTTGTTG	NA	False	NA	NA	False	AATAGA	-12	NA	51891589	51877493	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119_51891189_51891503
transcript_737.known	chr1	-	1360	6	FSM	ENSMUSG00000026049.12	ENSMUST00000147571.8	1360	6	0	0	0	0	multi-exon	FALSE	canonical	3	149	junction_5	107.444125013888	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTATTTCAGACTAATGTTC	NA	False	NA	NA	False	GATAAA	-28	NA	44141522	44125969	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_44126224_44127002_44127209_44127635_44127688_44130520_44130752_44139007_44139162_44141059
transcript_7372.known	chr11	-	1792	6	FSM	ENSMUSG00000020390.13	ENSMUST00000020657.13	1792	6	0	0	0	0	multi-exon	FALSE	canonical	3	559	junction_4	76.342910607338	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCACACCAGCCTCCTAGAGA	NA	False	NA	58	True	NA	NA	NA	51891311	51876323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_51877638_51879438_51879528_51882220_51882311_51886200_51886227_51888644_51888726_51891119
transcript_738.known	chr1	+	3570	10	FSM	ENSMUSG00000041684.12	ENSMUST00000114709.3	3570	10	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	6.90857402520436	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAATTTTTGTGGTTCAGGC	NA	False	NA	NA	False	ATTAAA	-12	NA	44159127	44183930	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_44159435_44165425_44166027_44166797_44166925_44167887_44167984_44168419_44168525_44168742_44168838_44176143_44176277_44177732_44177820_44180937_44181035_44182008
transcript_739.known	chr1	+	3907	15	FSM	ENSMUSG00000026048.17	ENSMUST00000027214.4	3907	15	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	30.0296622066399	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTTACTATCCATATTGTTA	NA	False	NA	94	True	ATTAAA	-40	NA	44187006	44220420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_44187311_44196096_44196273_44197303_44197420_44197964_44198052_44200136_44200198_44200969_44201114_44203036_44203245_44205968_44207043_44212497_44212740_44213071_44213192_44213321_44213536_44214998_44215144_44217333_44217535_44218306_44218392_44219690
transcript_7391.known	chr11	+	1754	6	FSM	ENSMUSG00000036309.15	ENSMUST00000109072.2	1754	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1986.48266038242	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTGTTTCTTAATGAA	591	False	NA	34	True	AATAAA	-41	NA	52123015	52137685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_52123440_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
transcript_7397.known	chr11	+	1440	6	FSM	ENSMUSG00000036309.15	ENSMUST00000037324.12	1440	6	0	0	0	0	multi-exon	FALSE	canonical	3	4483	junction_4	346.23483360286	301	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAATGTGTTTCTTAATGAA	411	False	NA	34	True	AATAAA	-41	NA	52122835	52137685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52134441_52134586_52135807_52135949_52136811
transcript_7398.known	chr11	+	370	4	FSM	ENSMUSG00000036309.15	ENSMUST00000166537.8	370	4	0	0	0	0	multi-exon	FALSE	canonical	3	64	junction_3	2467.99315684266	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TTTACTGAAGAGGAAGAGGC	439	False	NA	19	True	NA	NA	NA	52122863	52135924	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_52122946_52127663_52127761_52133413_52133488_52135807
transcript_74.known	SIRV1	+	702	3	FSM	SIRV1B	SIRV108	702	3	0	0	0	0	multi-exon	FALSE	canonical	3	89	junction_1	13	312	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAAAGACATAGGGCGTGG	NA	False	NA	NA	False	NA	NA	NA	10582	11606	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV1_+_10792_10897_11188_11403
transcript_740.known	chr1	+	3138	11	FSM	ENSMUSG00000056870.10	ENSMUST00000074525.10	3138	11	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_7	3.104834939252	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTGTATGATATGCTCACTTA	NA	False	NA	NA	False	AATAAA	-20	NA	44590670	44835998	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_44591033_44728303_44728376_44747776_44747839_44783633_44783706_44793502_44793602_44805173_44805312_44812430_44812548_44813212_44813306_44820127_44820267_44827607_44827703_44834109
transcript_7401.known	chr11	+	951	10	FSM	ENSMUSG00000020402.12	ENSMUST00000125694.8	951	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_7	1380.41853556569	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGCCTAGGACTGGAATTTCA	5406	False	NA	NA	False	NA	NA	NA	52251961	52279323	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52277193_52277299_52278242_52278301_52279258
transcript_7411.known	chr11	+	2022	9	FSM	ENSMUSG00000020402.12	ENSMUST00000102758.8	2022	9	0	0	0	0	multi-exon	FALSE	canonical	3	3003	junction_1	192.557742962988	2142	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTTGTTGTTTTTGTTA	5131	False	NA	30	True	AATAAA	-26	NA	52251686	52280224	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_52251980_52265125_52265196_52265744_52265795_52267217_52267371_52267474_52267528_52274676_52274905_52276409_52276561_52278242_52278301_52279258
transcript_7418.known	chr11	+	2472	3	FSM	ENSMUSG00000036275.14	ENSMUST00000109057.8	2472	3	0	0	0	0	multi-exon	FALSE	canonical	3	140	junction_1	2	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGCTTCTGTTAGTGTGTT	4558	False	NA	NA	False	AATAAA	-16	NA	52287254	52299555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_52287431_52293872_52294385_52297771
transcript_7419.nnic	chr11	-	2274	2	Genic_Genomic	ENSMUSG00000081297.2	novel	596	1	NA	NA	-1496	1196	multi-exon	FALSE	canonical	3	4	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTTGTAGTTTCTGAT	NA	False	NA	NA	False	AATAAA	-15	NA	52371426	52368138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Genic_Genomic_chr11_-_52368313_52369326
transcript_742.known	chr1	+	2953	21	FSM	ENSMUSG00000025995.17	ENSMUST00000027139.15	2953	21	0	0	0	0	multi-exon	FALSE	canonical	3	530	junction_5	51.2145243070752	264	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTAAAGCCTTGTGTTTAT	NA	False	NA	8	True	TATAAA	-24	NA	45834325	45862779	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832_45845953_45846830_45846920_45851200_45851360_45852204_45852265_45852349_45852466_45853700_45853877_45855636_45855795_45856422_45856604_45857329_45857425_45857981_45858078_45858648_45858819_45859290_45859351_45861607_45861755_45862042_45862135_45862467
transcript_7420.known	chr11	-	4618	19	FSM	ENSMUSG00000020361.14	ENSMUST00000020630.8	4618	19	0	0	0	0	multi-exon	FALSE	canonical	3	1487	junction_13	205.703280251368	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGTTTTCTTAATTTTCTTA	NA	False	NA	-1	True	AATAAA	-22	NA	53191284	53150640	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_53152643_53153090_53153253_53153706_53153827_53155860_53155969_53156750_53156877_53157792_53157946_53159316_53159413_53160514_53160697_53161772_53161907_53162840_53162948_53163553_53163706_53165969_53166047_53171294_53171540_53174355_53174490_53174926_53175027_53177679_53177803_53179850_53179992_53183083_53183142_53190886
transcript_7425.known	chr11	+	1267	4	FSM	ENSMUSG00000018239.10	ENSMUST00000018383.10	1267	4	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_3	30.2691628926573	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAATGATGTAAGTTTCAAGT	NA	False	NA	14	True	TATAAA	-27	NA	53215505	53224128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_53215569_53218095_53218255_53221513_53221559_53223128
transcript_7426.known	chr11	-	405	3	FSM	ENSMUSG00000044894.15	ENSMUST00000109021.4	405	3	0	0	0	0	multi-exon	FALSE	canonical	3	885	junction_2	2412.5	449	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2947	False	NA	-8	True	AATAAA	-17	NA	53321654	53319779	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_53319978_53321362_53321530_53321614
transcript_7427.known	chr11	-	1521	2	FSM	ENSMUSG00000044894.15	ENSMUST00000061326.5	1521	2	0	0	0	0	multi-exon	FALSE	canonical	3	5710	junction_1	0	1080	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTAATTTTGCTAGTGT	2947	False	NA	NA	False	NA	NA	NA	53321654	53318748	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_53319978_53321362
transcript_7428.known	chr11	-	375	2	FSM	ENSMUSG00000044894.15	ENSMUST00000156503.2	375	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTGTGACTTTGTGTGCTT	2943	False	NA	-8	True	AATAAA	-17	NA	53321658	53319779	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_53319978_53321481
transcript_7429.known	chr11	+	3161	18	FSM	ENSMUSG00000018395.20	ENSMUST00000120613.9	3161	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	25.820514362377	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	ATAAAAAAAAAAAAATAAAA	919	False	NA	NA	False	NA	NA	NA	53458205	53492794	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661_53477758_53481543_53481553_53484200_53484358_53484745_53484927_53485103_53485215_53485652_53485779_53488785_53488840_53489120_53489190_53489533_53489659_53491837
transcript_7430.known	chr11	+	2290	17	FSM	ENSMUSG00000018395.20	ENSMUST00000057330.15	2290	17	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_9	19.4950915296646	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGGAGAGAACTCCTTAAT	919	False	NA	21	True	AATAAA	-18	NA	53458205	53491932	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661_53477758_53484200_53484358_53484745_53484927_53485103_53485215_53485652_53485779_53488785_53488840_53489120_53489190_53489533_53489659_53491837
transcript_7431.nic	chr11	+	1347	9	ISM	ENSMUSG00000018395.20	ENSMUST00000057330.15	2290	17	-10	14210	-10	0	5prime_fragment	FALSE	canonical	3	61	junction_1	8.55496931613434	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TGGAGAAGATGGAGAAAAAA	909	False	NA	NA	False	NA	NA	NA	53458195	53477722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661
transcript_7432.known	chr11	+	2257	18	FSM	ENSMUSG00000018395.20	ENSMUST00000173744.8	2257	18	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	25.820514362377	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCCTGGAGAGAACTCCTT	937	False	NA	18	True	AATAAA	-15	NA	53458223	53491929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_53458359_53461362_53461637_53469670_53469816_53469926_53470012_53470554_53470661_53474053_53474194_53474641_53474840_53475097_53475273_53477661_53477758_53481543_53481553_53484221_53484358_53484745_53484927_53485103_53485215_53485652_53485779_53488785_53488840_53489120_53489190_53489533_53489659_53491837
transcript_7433.known	chr11	-	5153	25	FSM	ENSMUSG00000020380.17	ENSMUST00000020649.14	5153	25	0	0	0	0	multi-exon	FALSE	canonical	2	205	junction_2	31.5695880379977	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGGGGCATGGATGTGGGT	NA	False	NA	1	True	NA	NA	NA	53598146	53540345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_53541483_53543060_53543195_53545703_53545847_53546359_53546446_53558848_53559074_53560456_53560585_53565524_53565639_53565729_53565823_53566728_53566840_53569691_53569886_53570216_53570344_53570859_53571050_53574028_53574267_53574952_53575129_53576976_53577135_53578921_53579105_53582939_53583147_53583534_53583729_53585727_53585894_53586109_53586239_53588940_53589146_53589648_53589835_53592783_53592936_53596811_53596896_53597753
transcript_7438.known	chr11	-	693	3	FSM	ENSMUSG00000020380.17	ENSMUST00000152598.2	693	3	0	0	0	0	multi-exon	FALSE	canonical	3	262	junction_2	2	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAGACTTTCAAGCTTTT	1088	False	NA	NA	False	ATTAAA	-17	NA	53585827	53582747	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_53583147_53583534_53583729_53585727
transcript_7439.known	chr11	+	2136	10	FSM	ENSMUSG00000018899.18	ENSMUST00000108920.10	2136	10	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_1	9.82940913537621	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGTGTGGCTTTTTATTTA	NA	False	NA	10	True	TATAAA	-17	NA	53660840	53668149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_53661105_53662109_53662202_53663664_53663765_53664481_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
transcript_7441.known	chr11	+	2069	10	FSM	ENSMUSG00000018899.18	ENSMUST00000019043.13	2069	10	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	21.2573879677132	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGCGTGTGGCTTTTTATTTA	NA	False	NA	10	True	TATAAA	-17	NA	53661320	53668149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_53661518_53662109_53662202_53663664_53663765_53664481_53664659_53664751_53664802_53664887_53665021_53665171_53665295_53665879_53665930_53666743_53666880_53667138
transcript_7444.known	chr11	-	3062	10	FSM	ENSMUSG00000018900.8	ENSMUST00000019044.8	3062	10	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_7	3.67507453523138	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAATTGAATACAATCTTTA	NA	False	NA	NA	False	AATAAA	-23	NA	53782486	53755367	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_53756723_53757062_53757199_53758348_53758532_53760047_53760263_53762393_53762495_53764493_53764621_53765760_53765933_53766834_53766990_53774486_53774591_53781972
transcript_7445.known	chr11	-	1182	7	FSM	ENSMUSG00000020388.13	ENSMUST00000018755.10	1182	7	0	0	0	0	multi-exon	FALSE	canonical	3	190	junction_5	18.9245578254523	131	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAGCTAGTGTCTGGCCTGA	NA	False	NA	-2	True	AATAAA	-22	NA	53959840	53945753	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_53946066_53946182_53946301_53946615_53946780_53946968_53947151_53950763_53950843_53954460_53954613_53959665
transcript_7452.known	chr11	+	2263	16	FSM	ENSMUSG00000018906.15	ENSMUST00000093107.12	2263	16	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_12	14.6945190084225	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAATAGCCTTATTTT	NA	False	NA	15	True	AATAAA	-17	NA	53991749	54022478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001909_54002248_54002401_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017063_54017124_54019873_54019943_54020291_54020389_54022015
transcript_7453.known	chr11	+	2230	16	FSM	ENSMUSG00000018906.15	ENSMUST00000019050.12	2230	16	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_12	14.0816665680357	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTTAAATAGCCTTATTTT	NA	False	NA	15	True	AATAAA	-17	NA	53991788	54022478	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_53991867_53992345_53992474_54001034_54001141_54001811_54001909_54002248_54002401_54004962_54005101_54008269_54008510_54009959_54010154_54010895_54011073_54015482_54015554_54015771_54015872_54016588_54016643_54017171_54017238_54019873_54019943_54020291_54020389_54022015
transcript_7458.known	chr11	+	5804	21	FSM	ENSMUSG00000020333.18	ENSMUST00000093106.12	5804	21	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_10	11.8346947573649	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGTTCATAATTTTCTTATA	NA	False	NA	NA	False	AATAAA	-22	NA	54194623	54255582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_54194749_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227761_54227840_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
transcript_7459.nic	chr11	+	2568	21	NIC	ENSMUSG00000020333.18	novel	5804	21	NA	NA	15	0	combination_of_known_junctions	FALSE	canonical	3	31	junction_10	9.20584053739798	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGATATATTGTACTTAATT	NA	False	NA	5	True	ATTAAA	-19	NA	54194638	54252361	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_54194749_54210977_54211199_54214066_54214182_54214815_54214881_54215891_54215994_54216386_54216487_54217940_54218120_54219227_54219261_54220745_54220798_54225877_54225952_54227896_54227975_54229237_54229373_54229825_54229961_54231322_54231419_54232584_54232658_54236001_54236091_54236703_54236821_54241383_54241528_54242847_54242950_54243816_54243889_54251885
transcript_7463.known	chr11	+	1433	14	FSM	ENSMUSG00000020332.8	ENSMUST00000094193.3	1433	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	0.737820234355803	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GATAAACTGTGGGGAAATTC	NA	False	NA	NA	False	ATTAAA	-18	NA	54261477	54317616	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_54261619_54261709_54261804_54262563_54262646_54264325_54264387_54281292_54281425_54285457_54285578_54286371_54286412_54289281_54289347_54290638_54290716_54296703_54296860_54300475_54300557_54302621_54302742_54308555_54308677_54317473
transcript_7464.known	chr11	+	6255	18	FSM	ENSMUSG00000035992.16	ENSMUST00000046835.14	6255	18	0	0	0	0	multi-exon	TRUE	canonical	3	95	junction_9	15.4083965785252	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGGGTAATGTTTGTGTTTC	1976	False	NA	27	True	AATAAA	-17	NA	54329024	54409061	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_54329215_54356912_54357040_54366457_54366593_54371075_54371177_54371435_54371511_54373320_54373413_54378537_54378622_54380094_54380167_54381628_54381765_54384018_54384221_54387427_54387514_54390236_54390384_54391345_54391516_54393084_54394502_54395563_54395733_54400707_54400906_54404195_54404312_54406323
transcript_7465.known	chr11	+	8189	28	FSM	ENSMUSG00000037533.21	ENSMUST00000102743.10	8189	28	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	12.2166092610894	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGTGCTTCCTTCCCA	NA	False	NA	13	True	AATAAA	-14	NA	54413672	54590111	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_54413945_54434404_54434476_54437198_54437256_54443615_54443700_54452150_54452221_54459178_54459323_54501613_54501746_54510711_54510890_54513141_54513279_54516686_54516846_54517410_54517564_54522017_54522183_54525585_54525694_54526837_54527042_54530575_54530685_54533536_54533778_54540007_54540166_54548071_54548313_54551628_54552013_54554828_54555041_54559439_54559564_54567020_54567242_54570064_54570254_54574717_54574853_54581002_54581232_54582063_54582567_54585095_54585399_54586905
transcript_7466.known	chr11	+	1829	13	FSM	ENSMUSG00000037533.21	ENSMUST00000108895.8	1829	13	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_8	14.7082743152735	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTTATGCTCATTATTGT	NA	False	NA	NA	False	AATAAA	-15	NA	54413715	54525835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_54413945_54434404_54434476_54437198_54437256_54443615_54443700_54452150_54452221_54459178_54459323_54501613_54501746_54510711_54510890_54513141_54513279_54516686_54516846_54517410_54517564_54522017_54522183_54525585
transcript_7470.known	chr11	-	3069	6	FSM	ENSMUSG00000052298.13	ENSMUST00000064104.13	3069	6	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_4	66.5263857428013	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGTTTGGATTTTTCT	NA	False	NA	-12	True	AATAAA	-13	NA	54678501	54608281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54647231_54647386_54678385
transcript_7472.nnic	chr11	-	2933	5	NIC	ENSMUSG00000052298.13	novel	3069	6	NA	NA	-18	0	combination_of_known_splicesites	FALSE	canonical	3	30	junction_4	245.457735669504	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGTTTGGATTTTTCT	NA	False	NA	-12	True	AATAAA	-13	NA	54678519	54608281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_54610551_54611068_54611184_54614399_54614502_54631063_54631377_54678385
transcript_7473.nnic	chr11	-	2771	5	NIC	ENSMUSG00000052298.13	novel	3069	6	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	3	13	junction_3	267.149770727957	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTCTTTGTTTGGATTTTTCT	NA	False	NA	-12	True	AATAAA	-13	NA	54678516	54608281	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_54610551_54611068_54611184_54614399_54614502_54647231_54647386_54678385
transcript_7477.known	chr11	-	801	3	FSM	ENSMUSG00000052298.13	ENSMUST00000136059.8	801	3	0	0	0	0	multi-exon	FALSE	canonical	3	549	junction_1	84	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGCCTTAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	54678467	54630811	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_54631377_54647231_54647386_54678385
transcript_7479.known	chr11	-	279	4	FSM	ENSMUSG00000020268.15	ENSMUST00000124351.2	279	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	82.0460575259747	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCTTCCAGGATAAACCCAT	NA	False	NA	NA	False	NA	NA	NA	54751435	54731957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_54732029_54739404_54739487_54741170_54741239_54751377
transcript_7480.known	chr11	+	636	3	FSM	ENSMUSG00000020267.7	ENSMUST00000020504.6	636	3	0	0	0	0	multi-exon	FALSE	canonical	3	4351	junction_2	227.5	4464	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGATTTGTTACTCTGGAA	NA	False	NA	34	True	AATAAA	-23	NA	54757208	54761327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_54757427_54760673_54760779_54761014
transcript_7481.known	chr11	+	580	2	FSM	ENSMUSG00000020267.7	ENSMUST00000117710.2	580	2	0	0	0	0	multi-exon	FALSE	canonical	3	4806	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCATGTCCTTGGGGGTC	NA	False	NA	NA	False	AATGAA	-36	NA	54757306	54761133	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_54757427_54760673
transcript_7482.known	chr11	+	1594	5	FSM	ENSMUSG00000018339.13	ENSMUST00000082430.11	1594	5	0	0	0	0	multi-exon	FALSE	canonical	3	86	junction_4	9.98436277385793	56	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCAGCCTACTTGGAATTT	NA	False	NA	9	True	AGTAAA	-16	NA	54793597	54801203	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_54793879_54797952_54798107_54799366_54799485_54799865_54799966_54800262
transcript_7484.nic	chr11	-	2759	18	NIC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	-1	0	combination_of_known_junctions	FALSE	canonical	3	179	junction_17	40.9030417393305	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3581	False	NA	-5	True	CATAAA	-18	NA	54846949	54801612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
transcript_7487.known	chr11	-	2834	18	FSM	ENSMUSG00000020400.18	ENSMUST00000108889.10	2834	18	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_1	53.1161161918674	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTGACTGGCTAATTCT	3582	False	NA	-3	True	CATAAA	-20	NA	54846948	54801610	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54831536_54831709_54846846
transcript_7488.nic	chr11	-	2566	17	NIC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_16	54.30350903717	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3602	False	NA	-5	True	CATAAA	-18	NA	54846928	54801612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_54802324_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846846
transcript_749.nic	chr1	+	614	7	ISM	ENSMUSG00000025995.17	ENSMUST00000154436.8	3226	20	49	16908	-5	1249	5prime_fragment	FALSE	canonical	3	530	junction_5	65.1425786682992	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAGAAGAATGCAAAGAACA	NA	False	NA	NA	False	NA	NA	NA	45834657	45845856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536_45844608_45845832
transcript_7490.nic	chr11	-	2640	17	NIC	ENSMUSG00000020400.18	novel	2973	19	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	81	junction_16	64.3996312101242	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	3602	False	NA	-5	True	CATAAA	-18	NA	54846928	54801612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54846846
transcript_7491.known	chr11	-	2642	17	FSM	ENSMUSG00000020400.18	ENSMUST00000108886.8	2642	17	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_16	76.2520491527933	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTGTGACTGGCTAATT	6841	False	NA	-5	True	CATAAA	-18	NA	54853742	54801612	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_54802398_54806322_54806414_54807621_54807814_54808081_54808148_54808625_54808752_54809431_54809564_54811586_54811716_54814923_54815056_54815201_54815268_54817529_54817620_54819920_54820045_54821590_54821686_54824814_54825007_54827286_54827368_54828772_54828892_54830423_54830562_54853658
transcript_7495.known	chr11	-	2489	26	FSM	ENSMUSG00000018340.14	ENSMUST00000108883.10	2489	26	0	0	0	0	multi-exon	FALSE	canonical	3	343	junction_6	73.4786608478952	238	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	-4	True	NA	NA	NA	54924271	54869933	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54877876_54877895_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
transcript_7499.known	chr11	-	2471	25	FSM	ENSMUSG00000018340.14	ENSMUST00000102727.3	2471	25	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_5	83.6892399827414	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGTGATGTGTGTGCTTTA	NA	False	NA	-4	True	NA	NA	NA	54924271	54869933	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_54870348_54872441_54872565_54874123_54874183_54875901_54875998_54876947_54877042_54882216_54882271_54883112_54883193_54885109_54885201_54885292_54885407_54885710_54885806_54887138_54887221_54889360_54889440_54890620_54890680_54892036_54892160_54894804_54894864_54895492_54895589_54895938_54896033_54896610_54896668_54898683_54898764_54899935_54900027_54901817_54901932_54902528_54902624_54904650_54904742_54912362_54912407_54924184
transcript_75.known	SIRV1	-	973	3	FSM	SIRV1A	SIRV106	973	3	0	0	0	0	multi-exon	FALSE	canonical	2	497	junction_2	204	801	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAATCGATGCATACTTCCTT	NA	False	NA	NA	False	NA	NA	NA	10786	1000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV1_-_1485_7552_7809_10553
transcript_7502.known	chr11	-	1402	7	FSM	ENSMUSG00000049588.14	ENSMUST00000055040.13	1402	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	2.51661147842358	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGTGAGGGTGTATTTCATTC	4853	False	NA	NA	False	AATAAA	-23	NA	54968933	54940556	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_54941385_54941977_54942076_54943173_54943294_54943720_54943823_54945797_54945872_54951286_54951372_54968838
transcript_7503.known	chr11	+	4127	4	FSM	ENSMUSG00000000594.8	ENSMUST00000000608.8	4127	4	0	0	0	0	multi-exon	FALSE	canonical	3	325	junction_3	15.195028426722	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTGTTAATTTCTTTTA	NA	False	NA	NA	False	AATAAA	-20	NA	54988940	55003855	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_54989071_54994412_54994575_54999723_54999907_55000203
transcript_7506.known	chr11	-	1772	7	FSM	ENSMUSG00000020264.6	ENSMUST00000125560.2	1772	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.577350269189626	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAGAAAAGAAAAAAAAAAGA	2229	False	NA	NA	False	NA	NA	NA	55075903	55058829	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_55059755_55060679_55060899_55065493_55065579_55070150_55070247_55071532_55071622_55072370_55072462_55075636
transcript_7507.known	chr11	+	5264	11	FSM	ENSMUSG00000020261.16	ENSMUST00000108872.9	5264	11	0	0	0	0	multi-exon	TRUE	canonical	3	47	junction_5	8.1516869419771	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGGTTGCAAACTGTGTCTT	NA	False	NA	24	True	AATAAA	-24	NA	55095175	55127156	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_55095315_55104755_55104901_55109833_55109925_55110405_55110495_55111201_55111298_55112822_55112908_55114424_55114644_55115780_55115880_55116791_55116959_55119012_55119183_55123192
transcript_751.nic	chr1	+	646	6	ISM	ENSMUSG00000025995.17	ENSMUST00000154436.8	3226	20	-7	18157	-7	0	5prime_fragment	FALSE	canonical	3	530	junction_5	70.1843287351243	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTAAGAATTCCCTTTTATTG	NA	False	NA	NA	False	AAAAAG	-15	NA	45834601	45844607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_+_45834765_45838175_45838306_45840320_45840387_45841198_45841290_45843036_45843162_45844536
transcript_7515.known	chr11	-	2115	10	FSM	ENSMUSG00000018593.14	ENSMUST00000108858.8	2115	10	0	0	0	0	multi-exon	FALSE	canonical	3	134	junction_8	195.999685058956	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTCCTGTCCCGGGTGATGG	3858	False	NA	-2	True	AATAAA	-22	NA	55310724	55285325	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298103_55300753_55300824_55310613
transcript_7516.known	chr11	-	1269	10	FSM	ENSMUSG00000018593.14	ENSMUST00000214685.2	1269	10	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_9	224.039568815559	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	573	False	NA	NA	False	AATACA	-28	NA	55314009	55286246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55313826
transcript_7519.known	chr11	-	1366	11	FSM	ENSMUSG00000018593.14	ENSMUST00000213866.2	1366	11	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_10	199.894497172884	196	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	CAAAGTAAGAAAGAAACTAG	3466	False	NA	NA	False	AATACA	-28	NA	55311116	55286246	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_55286440_55286626_55286776_55289373_55289523_55290017_55290152_55292776_55292898_55296005_55296128_55297335_55297424_55298045_55298106_55300753_55300824_55310613_55310682_55310904
transcript_7520.known	chr11	-	541	4	FSM	ENSMUSG00000018585.10	ENSMUST00000108857.2	541	4	0	0	0	0	multi-exon	FALSE	canonical	3	2715	junction_3	136.123310110927	1520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAAGTGTCTGGTGTATGTT	NA	False	NA	-7	True	AATAAA	-20	NA	55352065	55337466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_55337611_55341282_55341452_55345706_55345783_55351913
transcript_7523.known	chr11	-	327	3	FSM	ENSMUSG00000018585.10	ENSMUST00000138412.2	327	3	0	0	0	0	multi-exon	FALSE	canonical	3	90	junction_1	1312.5	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGAAGTGTCTGGTGTAT	NA	False	NA	-10	True	AATAAA	-17	NA	55352023	55337469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_55337611_55345706_55345783_55351913
transcript_7526.known	chr11	+	6703	12	FSM	ENSMUSG00000018583.6	ENSMUST00000018727.4	6703	12	0	0	0	0	multi-exon	TRUE	canonical	3	6361	junction_7	586.595613027527	95	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAAATGAATTCTCTTTTTTC	NA	False	NA	NA	False	AATAAA	-15	NA	55360510	55395664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_55360628_55376451_55376565_55378304_55378387_55379844_55380019_55382789_55382881_55384273_55384368_55386078_55386278_55386969_55387072_55388476_55388589_55388738_55388868_55389383_55389494_55390284
transcript_754.known	chr1	-	5498	10	FSM	ENSMUSG00000025986.7	ENSMUST00000027131.6	5498	10	0	0	0	0	multi-exon	TRUE	canonical	3	237	junction_4	21.0736509753792	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGGTGTGTTTTCATTGTC	NA	False	NA	NA	False	AATAAA	-16	NA	46893206	46846703	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_46849272_46851145_46851337_46857222_46857304_46858224_46858594_46859682_46859804_46865252_46865442_46866502_46866673_46871715_46871924_46874286_46875312_46892630
transcript_7544.known	chr11	-	1765	14	FSM	ENSMUSG00000020523.15	ENSMUST00000108850.2	1765	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_12	166.027587356179	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	57409429	57374617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404899_57405115_57409398
transcript_7548.known	chr11	-	2557	14	FSM	ENSMUSG00000020523.15	ENSMUST00000020831.13	2557	14	0	0	0	0	multi-exon	TRUE	canonical	3	63	junction_13	118.75144346678	124	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCGTGGTATTTAATAGC	NA	False	NA	NA	False	AATAAA	-21	NA	57409443	57373818	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57404920_57405115_57409398
transcript_7549.nnic	chr11	-	2489	14	NNC	ENSMUSG00000020523.15	novel	2557	14	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_12	132.513346430646	32	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TAAGCGTGGTATTTAATAGC	NA	False	NA	NA	False	AATAAA	-21	NA	57409482	57373818	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57405030_57405118_57409398
transcript_7556.nnic	chr11	-	1690	14	NNC	ENSMUSG00000020523.15	novel	1765	14	NA	NA	-39	0	at_least_one_novel_splicesite	FALSE	canonical	3	45	junction_12	132.513346430646	9	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAGAAAGAAAGAAGAAAA	NA	False	NA	NA	False	NA	NA	NA	57409482	57374617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_57374967_57378392_57378447_57380935_57381009_57382745_57382886_57383829_57383953_57390551_57390632_57396059_57396184_57397662_57397822_57398318_57398454_57400203_57400293_57404067_57404161_57404461_57404562_57405030_57405118_57409398
transcript_7563.known	chr11	+	4827	3	FSM	ENSMUSG00000020522.14	ENSMUST00000108849.8	4827	3	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	35	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGTTGAATGATGTATATTA	NA	False	NA	19	True	AATAAA	-20	NA	57409489	57424641	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_57409539_57418684_57419116_57420294
transcript_7565.known	chr11	+	4839	3	FSM	ENSMUSG00000020522.14	ENSMUST00000020830.14	4839	3	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_1	12.5	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAGTTGAATGATGTATATT	NA	False	NA	18	True	AATAAA	-19	NA	57409512	57424640	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_57409575_57418684_57419116_57420294
transcript_7566.known	chr11	-	714	4	FSM	ENSMUSG00000087165.8	ENSMUST00000152790.8	714	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_3	7.84573486395988	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGCATCTTGTCTCAGTGATT	NA	False	NA	-3	True	NA	NA	NA	57692243	57686324	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_57686621_57686851_57687000_57687137_57687224_57692059
transcript_7567.known	chr11	-	502	3	FSM	ENSMUSG00000087165.8	ENSMUST00000140069.2	502	3	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_2	6.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAACCCCCTGTTGCGGTGC	NA	False	NA	NA	False	NA	NA	NA	57692224	57686431	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_57686621_57686851_57687000_57692059
transcript_7568.known	chr11	-	543	3	FSM	ENSMUSG00000087165.8	ENSMUST00000132378.2	543	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	6.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATAAACTCTTCCTTTTGTCC	NA	False	NA	-23	True	NA	NA	NA	57692240	57686344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_57686621_57687137_57687224_57692059
transcript_757.known	chr1	-	2838	6	FSM	ENSMUSG00000026107.12	ENSMUST00000027279.12	2838	6	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_5	8.25590697622012	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATATAGGAGTAACAGAACT	NA	False	NA	-1	True	AATAAA	-32	NA	51517558	51508646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51516983
transcript_7576.nnic	chr11	+	2375	7	NNC	ENSMUSG00000020515.14	novel	231	3	NA	NA	-1336	0	at_least_one_novel_splicesite	FALSE	canonical	3	35	junction_1	266.148872291848	103	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGAAGTGTGGTCTTTG	NA	False	NA	14	True	AATAAA	-19	NA	57993642	58009420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_57994039_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
transcript_7578.known	chr11	+	2035	7	FSM	ENSMUSG00000020515.14	ENSMUST00000020822.12	2035	7	0	0	0	0	multi-exon	FALSE	canonical	3	691	junction_3	50.6603614497787	299	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGAAGTGTGGTCTTTG	NA	False	NA	14	True	AATAAA	-19	NA	57994978	58009420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_57995035_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
transcript_758.known	chr1	-	708	6	FSM	ENSMUSG00000026107.12	ENSMUST00000185534.2	708	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_5	22.105203007437	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCCTTTTATATTTTTGGT	NA	False	NA	NA	False	NA	NA	NA	51517558	51510300	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51517459
transcript_7582.nnic	chr11	+	2070	7	NNC	ENSMUSG00000020515.14	novel	231	3	NA	NA	-224	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	278.973963341066	99	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGAAGTGTGGTCTTTG	NA	False	NA	14	True	AATAAA	-19	NA	57994754	58009420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_57994846_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
transcript_7589.known	chr11	+	2099	7	FSM	ENSMUSG00000020515.14	ENSMUST00000108843.8	2099	7	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	277.140558000609	111	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCATGAAGTGTGGTCTTTG	NA	False	NA	14	True	AATAAA	-19	NA	57995054	58009420	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_57995175_58000381_58000593_58002085_58002280_58003877_58004040_58004775_58004921_58006090_58006202_58008264
transcript_759.known	chr1	-	972	6	FSM	ENSMUSG00000026107.12	ENSMUST00000188204.7	972	6	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_5	20.9227149289952	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTTTTGAGTATTCCTGAT	NA	False	NA	NA	False	NA	NA	NA	51517558	51509965	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_51510571_51511487_51511540_51512164_51512241_51513692_51513765_51516636_51516776_51517530
transcript_7591.known	chr11	+	722	7	FSM	ENSMUSG00000020514.9	ENSMUST00000020820.2	722	7	0	0	0	0	multi-exon	TRUE	canonical	3	1080	junction_1	114.661821603066	707	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCTGTTTCATTGAATTATT	1481	False	NA	12	True	AGTAAA	-15	NA	58062486	58070391	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_58062540_58062619_58062669_58063858_58063977_58066102_58066169_58066957_58067036_58068042_58068113_58070103
transcript_7593.known	chr11	+	2022	3	FSM	ENSMUSG00000078853.9	ENSMUST00000035266.11	2022	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCCTGTTCTCTTCTTATCT	NA	False	NA	NA	False	AATAAA	-41	NA	58090381	58098417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_58090606_58092293_58092544_58096869
transcript_7594.known	chr11	+	1860	12	FSM	ENSMUSG00000037243.18	ENSMUST00000049353.9	1860	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	44.8549544883144	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGATATAAGAATCTGGGAGT	7776	False	NA	28	True	AATAAA	-35	NA	58197997	58205453	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_58198083_58198337_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200492_58200779_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
transcript_7597.known	chr11	+	1887	12	FSM	ENSMUSG00000037243.18	ENSMUST00000153510.9	1887	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	49.3946830209872	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTGGTGCTACAGATAT	7673	False	NA	14	True	AATAAA	-21	NA	58197894	58205439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_58198083_58198399_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200492_58200779_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
transcript_7598.nic	chr11	+	2263	11	NIC	ENSMUSG00000037243.18	novel	1887	12	NA	NA	-26	0	intron_retention	FALSE	canonical	3	82	junction_1	26.5083005867973	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTGGTGCTACAGATAT	7647	False	NA	14	True	AATAAA	-21	NA	58197868	58205439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_58198083_58198337_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58200999_58201081_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
transcript_76.known	SIRV1	-	744	3	FSM	SIRV1A	SIRV107	744	3	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_1	0	318	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGAGGCGCAAGGTACAT	NA	False	NA	NA	False	GATAAA	-18	NA	11643	10647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV1_-_10792_10882_11243_11403
transcript_760.known	chr1	-	4767	31	FSM	ENSMUSG00000018417.15	ENSMUST00000018561.14	4767	31	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_21	30.4396671028665	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCCATTTGCTGGATTACAA	NA	False	NA	NA	False	AATAAA	-16	NA	51955087	51789152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_51790456_51794801_51794930_51796263_51796417_51797034_51797168_51799453_51799561_51801650_51801786_51803048_51803124_51805980_51806068_51807808_51807896_51808162_51808250_51809944_51810014_51812391_51812542_51813470_51813565_51815362_51815564_51817479_51817707_51818719_51818921_51821128_51821192_51823595_51823701_51832798_51832865_51833470_51833558_51836157_51836277_51836546_51836695_51838690_51838795_51840342_51840442_51852161_51852226_51859299_51859347_51863255_51863361_51873607_51873703_51902477_51902594_51922241_51922386_51954919
transcript_7602.nic	chr11	+	2346	10	NIC	ENSMUSG00000037243.18	novel	1887	12	NA	NA	-26	0	intron_retention	FALSE	canonical	3	82	junction_1	26.418755029031	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTTGGTGCTACAGATAT	7647	False	NA	14	True	AATAAA	-21	NA	58197868	58205439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_58198083_58198337_58198588_58198798_58198831_58199620_58199885_58200217_58200267_58200353_58201160_58201243_58201323_58202281_58202397_58204791_58204892_58205002
transcript_7607.known	chr11	-	426	3	FSM	ENSMUSG00000049755.15	ENSMUST00000135097.8	426	3	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_2	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGCTCATCCCAAACTAAAAC	647	False	NA	NA	False	AGTAAA	-23	NA	58214140	58210529	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_58210781_58213425_58213556_58214095
transcript_7608.known	chr11	-	423	3	FSM	ENSMUSG00000049755.15	ENSMUST00000130217.2	423	3	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	4	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAATAGTAAAGTATTCAA	647	False	NA	NA	False	AATAAA	-16	NA	58214140	58210563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_58210781_58213394_58213556_58214095
transcript_7610.known	chr11	+	2977	7	FSM	ENSMUSG00000013646.18	ENSMUST00000073128.7	2977	7	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	22.1716786313832	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGTTTACTGTCTGTTAA	469	False	NA	16	True	AATAAA	-17	NA	58221575	58238551	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_58221619_58222079_58222690_58228562_58228626_58228774_58228904_58232111_58232274_58236137_58236312_58236755
transcript_7611.known	chr11	+	3016	7	FSM	ENSMUSG00000013646.18	ENSMUST00000116376.9	3016	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_1	38.7101049110206	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTACTGTCTGTTAAAAG	443	False	NA	19	True	AATAAA	-20	NA	58221549	58238554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_58221629_58222079_58222690_58228562_58228626_58228774_58228904_58232111_58232274_58236137_58236312_58236755
transcript_7612.known	chr11	-	549	4	FSM	ENSMUSG00000052642.4	ENSMUST00000064614.4	549	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATCTCATTGATTGTCAATT	NA	False	NA	NA	False	ATTAAA	-20	NA	58343749	58336974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_58337228_58338146_58338324_58343225_58343317_58343721
transcript_7616.known	chr11	-	561	4	FSM	ENSMUSG00000049154.13	ENSMUST00000239007.2	561	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	3.29983164553722	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ACAGAAGACTATGTCACAGA	NA	False	NA	NA	False	AATAAA	-21	NA	58692786	58683628	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_58683826_58687380_58687485_58689461_58689522_58692586
transcript_7617.known	chr11	+	4100	5	FSM	ENSMUSG00000072915.4	ENSMUST00000139337.3	4100	5	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_4	6.04152298679729	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATCTCCGAGTGGGCCTCT	NA	False	NA	NA	False	AATAAA	-22	NA	58737983	58752782	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_58738086_58739471_58739529_58745085_58745213_58746886_58746980_58749061
transcript_7618.known	chr11	+	3866	5	FSM	ENSMUSG00000020491.16	ENSMUST00000073924.10	3866	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_3	8.74642784226795	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTAAGTGTTAAAAGTGCTA	NA	False	NA	NA	False	ATTAAA	-16	NA	58758041	58774114	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_58758136_58759640_58759833_58767519_58767647_58769601_58769695_58770754
transcript_7619.known	chr11	+	614	1	FSM	ENSMUSG00000056895.5	ENSMUST00000078267.5	614	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAGAGCGTAGTTTAATAGAT	NA	False	NA	14	True	AATAAA	-22	NA	58839745	58840359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_58839700_58840400
transcript_7621.known	chr11	+	2301	7	FSM	ENSMUSG00000020455.17	ENSMUST00000108810.10	2301	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_3	38.6566078870525	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTTCTCTGCTTATCCTGTG	1688	False	NA	15	True	AATAAA	-15	NA	58868940	58882284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_58869471_58872066_58872163_58872818_58873050_58878458_58878507_58879550_58879574_58879654_58879756_58881012
transcript_7622.known	chr11	+	2251	6	FSM	ENSMUSG00000020455.17	ENSMUST00000093061.7	2251	6	0	0	0	0	multi-exon	FALSE	canonical	2	58	junction_2	16.6781293915115	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTCTCTGCTTATCCTGT	1689	False	NA	14	True	AATAAA	-14	NA	58868941	58882283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_58869471_58872066_58872163_58872818_58873050_58879550_58879574_58879654_58879756_58881012
transcript_7624.known	chr11	-	4021	3	FSM	ENSMUSG00000049287.6	ENSMUST00000054523.6	4021	3	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	4.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTCTGGAGTTGTTTGTTTT	NA	False	NA	NA	False	AATAAA	-31	NA	59054565	59046194	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_59049486_59049663_59050005_59054176
transcript_7630.known	chr11	-	1078	8	FSM	ENSMUSG00000020444.20	ENSMUST00000170202.9	1078	8	0	0	0	0	multi-exon	FALSE	canonical	3	619	junction_7	90.3745042609262	492	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATAGTGTCACAGCCCTCC	1470	False	NA	-20	True	AATAAA	-13	NA	59082778	59074700	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_59075014_59075261_59075348_59075854_59075940_59076019_59076159_59076767_59076865_59077225_59077268_59077599_59077714_59082576
transcript_7638.known	chr11	+	718	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108787.9	718	4	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	235.799820940465	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093314	59096714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_59093486_59094997_59095082_59095360_59095584_59096474
transcript_7641.known	chr11	+	792	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108785.2	792	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	266.007936389541	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCAGACTTTTGGGGTTGACT	NA	False	NA	12	True	ATTAAA	-26	NA	59093330	59096828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_59093486_59095000_59095082_59095381_59095584_59096474
transcript_7644.known	chr11	+	729	4	FSM	ENSMUSG00000036860.15	ENSMUST00000108784.4	729	4	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	265.902655538117	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093363	59096714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_59093546_59094997_59095082_59095360_59095584_59096474
transcript_7650.nnic	chr11	+	607	3	NIC	ENSMUSG00000036860.15	novel	718	4	NA	NA	3	0	combination_of_known_splicesites	FALSE	canonical	3	65	junction_1	260	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCACCTGTCATTGTCTTCTT	NA	False	NA	9	True	NA	NA	NA	59093320	59096714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_59093486_59095381_59095584_59096474
transcript_7654.known	chr11	+	1285	7	FSM	ENSMUSG00000020441.7	ENSMUST00000020719.7	1285	7	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_6	17.464249196573	63	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGAGTGTATATTATCTCGCT	NA	False	NA	7	True	AGTAAA	-15	NA	59099146	59101564	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_59099500_59099645_59099692_59099794_59099878_59099953_59100027_59100133_59100220_59100798_59100931_59101052
transcript_766.known	chr1	+	2982	24	FSM	ENSMUSG00000062939.12	ENSMUST00000027277.7	2982	24	0	0	0	0	multi-exon	TRUE	canonical	3	8	junction_15	7.16402480577569	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAACATTTGTTTCTGGTTTT	NA	False	NA	NA	False	AATATA	-18	NA	52047401	52146343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_52047888_52050941_52051071_52052948_52053094_52104473_52104573_52107904_52107998_52111019_52111099_52113835_52113922_52115691_52115844_52117652_52117812_52118899_52118993_52121676_52121737_52122020_52122039_52122136_52122231_52123237_52123283_52135943_52136028_52137545_52137645_52139482_52139619_52141010_52141061_52141275_52141371_52141639_52141777_52142006_52142199_52144364_52144432_52144826_52144936_52146068
transcript_7669.known	chr11	-	1800	5	FSM	ENSMUSG00000048076.15	ENSMUST00000061242.8	1800	5	0	0	0	0	multi-exon	FALSE	canonical	3	1704	junction_4	263.796678333902	1493	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGATGGGCTTGTGTGTCAGT	1847	False	NA	-4	True	AATAAA	-15	NA	59119096	59102239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_59103522_59103646_59103772_59103968_59104080_59104165_59104350_59118998
transcript_7676.known	chr11	-	1243	5	FSM	ENSMUSG00000049291.7	ENSMUST00000061481.7	1243	5	0	0	0	0	multi-exon	TRUE	canonical	2	4	junction_3	3.57071421427143	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAAATGCCTCAGAGCTC	NA	False	NA	NA	False	ATTAAA	-9	NA	59266483	59263494	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_59263997_59264251_59264395_59264991_59265264_59265982_59266146_59266320
transcript_7678.known	chr11	+	659	3	FSM	ENSMUSG00000086910.2	ENSMUST00000133698.2	659	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTTGGGAAAAATGCCTCC	NA	False	NA	NA	False	NA	NA	NA	59266286	59270731	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_59266712_59269251_59269320_59270565
transcript_7681.known	chr11	+	4351	6	FSM	ENSMUSG00000036819.15	ENSMUST00000108777.10	4351	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_3	13.8506317545446	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTAACCCCAGCACTTGG	9481	False	NA	7	True	NA	NA	NA	59340870	59349299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_59341339_59341500_59341667_59344336_59344472_59344617_59344886_59345758_59345906_59346132
transcript_7684.known	chr11	+	4315	6	FSM	ENSMUSG00000036819.15	ENSMUST00000045279.13	4315	6	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	19.0326036053925	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTGTAACCCCAGCACTTGG	9481	False	NA	7	True	NA	NA	NA	59340870	59349299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_59341339_59341500_59341667_59344336_59344472_59344653_59344886_59345758_59345906_59346132
transcript_7685.known	chr11	+	4359	6	FSM	ENSMUSG00000036819.15	ENSMUST00000147163.8	4359	6	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_3	10.3614670775909	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGTTATGTGGTTTTAACG	9481	False	NA	101	True	NA	NA	NA	59340870	59349393	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_59341339_59341500_59341667_59344336_59344472_59344703_59344886_59345758_59345906_59346132
transcript_7689.nic	chr11	-	1965	6	NIC	ENSMUSG00000009894.16	novel	1896	5	NA	NA	-11	0	combination_of_known_junctions	FALSE	canonical	3	14	junction_5	132.4259793243	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGGGTCTATAACAGCCA	NA	False	NA	3	True	NA	NA	NA	59340844	59297959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_59298637_59312350_59312476_59319166_59319640_59328803_59329340_59333617_59333668_59340740
transcript_769.known	chr1	+	2834	23	FSM	ENSMUSG00000026104.15	ENSMUST00000186574.7	2834	23	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_12	6.78598458418965	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTGATGAGTGGGAAAGCAG	3248	False	NA	NA	False	AATAAA	-16	NA	52158598	52194571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_52158783_52159070_52159232_52161749_52161881_52162272_52162418_52165678_52165778_52171702_52171793_52174761_52174841_52176037_52176130_52176437_52176590_52178352_52178512_52179735_52179829_52182059_52182120_52183244_52183275_52183362_52183457_52184308_52184351_52186452_52186537_52187059_52187159_52188061_52188198_52189777_52189828_52190396_52190492_52191391_52191538_52193002_52193189_52194144
transcript_7691.known	chr11	-	1896	5	FSM	ENSMUSG00000009894.16	ENSMUST00000010038.10	1896	5	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_2	15.4110350074224	168	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGCCGGGTCTATAACAGCCA	NA	False	NA	3	True	NA	NA	NA	59340825	59297959	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_59298637_59312350_59312476_59319166_59319640_59328803_59329340_59340740
transcript_7693.known	chr11	-	3412	4	FSM	ENSMUSG00000054519.9	ENSMUST00000057799.8	3412	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_3	2.86744175568088	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAGAAGAAGAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	59363300	59352022	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_59355113_59355837_59355899_59356276_59356404_59363166
transcript_7695.known	chr11	-	4064	10	FSM	ENSMUSG00000020472.15	ENSMUST00000013262.15	4064	10	0	0	0	0	multi-exon	FALSE	canonical	3	74	junction_1	26.5236907846458	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTTTCTTCTATCCTTGT	NA	False	NA	-1	True	AATAAA	-25	NA	59397470	59376345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_59378644_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394209_59394637_59394973_59395081_59396653_59396789_59396989
transcript_7696.known	chr11	-	3771	10	FSM	ENSMUSG00000020472.15	ENSMUST00000101150.9	3771	10	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_6	45.5777723603659	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGTTTTCTTCTATCCTTGT	NA	False	NA	-1	True	AATAAA	-25	NA	59397470	59376345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_59378644_59382940_59383055_59383996_59384108_59384540_59384674_59390369_59390447_59393745_59393927_59394502_59394637_59394973_59395081_59396653_59396789_59396989
transcript_7697.known	chr11	-	948	2	FSM	ENSMUSG00000043648.8	ENSMUST00000125307.2	948	2	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_1	0	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGCCACGCCTGCAGCTTGCC	NA	False	NA	NA	False	NA	NA	NA	59678468	59675528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_59676052_59678043
transcript_7699.nic	chr11	-	2986	14	NIC	ENSMUSG00000032633.13	novel	3437	13	NA	NA	98	0	combination_of_known_junctions	FALSE	canonical	3	19	junction_12	92.1306635794925	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GCAAGAATGTTGAAACACAA	NA	False	NA	-45	True	NA	NA	NA	59700652	59682615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686091_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700190_59700312_59700485
transcript_77.known	SIRV1	-	1300	4	FSM	SIRV1A	SIRV102	1300	4	0	0	0	0	multi-exon	FALSE	canonical	3	4191	junction_1	833.052752764727	520	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACTTTGAATCGATGCATAC	NA	False	NA	NA	False	NA	NA	NA	10366	1006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV1_-_1485_6337_6814_7552_7815_10282
transcript_770.known	chr1	+	3396	9	FSM	ENSMUSG00000043015.16	ENSMUST00000165859.8	3396	9	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_5	7.49061913328932	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCCTGGGCTCCGAGTCAGTG	NA	False	NA	9	True	ATTAAA	-20	NA	52669861	52691078	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_52670011_52676523_52676640_52679987_52680220_52680329_52680403_52681477_52681572_52682280_52682396_52684419_52684646_52687908_52688086_52688864
transcript_7700.known	chr11	-	3437	13	FSM	ENSMUSG00000032633.13	ENSMUST00000102697.10	3437	13	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_12	22.951034835057	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAACAGAGGTTGGTACCAG	NA	False	NA	NA	False	NA	NA	NA	59700842	59682233	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_59683638_59684911_59685018_59685098_59685231_59685966_59686091_59686575_59686690_59688880_59689072_59690179_59690272_59691868_59692030_59692954_59693177_59694574_59694722_59695346_59695618_59698625_59698742_59700485
transcript_7707.known	chr11	-	1646	12	FSM	ENSMUSG00000019373.12	ENSMUST00000019517.10	1646	12	0	0	0	0	multi-exon	FALSE	canonical	3	608	junction_5	45.2577558304642	280	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTAATGTGTGTTCTCTCA	NA	False	NA	-4	True	ATTAAA	-27	NA	59730664	59708620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_59708935_59709244_59709326_59710830_59710945_59712125_59712213_59715100_59715275_59717115_59717257_59718671_59718852_59720972_59721066_59723709_59723760_59723857_59723971_59727716_59727847_59730495
transcript_7715.known	chr11	+	1316	5	FSM	ENSMUSG00000032615.15	ENSMUST00000149076.8	1316	5	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	25.0337272494529	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCTGTGGCCTTCTC	2645	False	NA	6	True	AATAAA	-16	NA	59730272	59767359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_59730583_59743616_59743718_59751575_59751637_59765378_59765494_59766630
transcript_7716.known	chr11	+	1306	5	FSM	ENSMUSG00000032615.15	ENSMUST00000102695.4	1306	5	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	9.12414379544733	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCTGTGGCCTTCTC	1719	False	NA	6	True	AATAAA	-16	NA	59738898	59767359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_59739199_59743616_59743718_59751575_59751637_59765378_59765494_59766630
transcript_7717.known	chr11	+	1387	5	FSM	ENSMUSG00000032615.15	ENSMUST00000137695.2	1387	5	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	25.8976350271603	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCCTGTGCTGTGGCCTTCTC	1750	False	NA	6	True	AATAAA	-16	NA	59738929	59767359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_59739311_59743616_59743718_59751575_59751637_59765378_59765494_59766630
transcript_7719.known	chr11	+	771	2	FSM	ENSMUSG00000087249.2	ENSMUST00000151825.2	771	2	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTAGCATCTGTGCAAGAGT	NA	False	NA	NA	False	NA	NA	NA	59700905	59709317	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_59701088_59708728
transcript_7720.known	chr11	+	1920	2	FSM	ENSMUSG00000061650.7	ENSMUST00000081980.7	1920	2	0	0	0	0	multi-exon	FALSE	canonical	3	425	junction_1	0	126	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CACATGGTTTGCCTGTTGGC	NA	False	NA	10	True	ATTAAA	-21	NA	59839031	59853031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_59839305_59851384
transcript_7722.known	chr11	-	1611	2	FSM	ENSMUSG00000049892.8	ENSMUST00000062405.8	1611	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGTGCTTTGCTTTTAGGTT	NA	False	NA	NA	False	AATAAA	-20	NA	59855770	59854006	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_59855193_59855345
transcript_7723.known	chr11	-	961	7	FSM	ENSMUSG00000000301.17	ENSMUST00000102693.9	961	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	8.67307455417179	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTGGTCTCCTTCCCA	NA	False	NA	1	True	AATAAA	-19	NA	59937307	59861439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_59861702_59862009_59862085_59864893_59865006_59867664_59867811_59874268_59874385_59922538_59922647_59937165
transcript_7724.nic	chr11	-	907	6	NIC	ENSMUSG00000000301.17	novel	961	7	NA	NA	-46	0	combination_of_known_junctions	TRUE	canonical	1	2	junction_5	14.8942942095287	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCTCTGGTCTCCTTCCCA	NA	False	NA	1	True	AATAAA	-19	NA	59937361	59861439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_59861702_59862009_59862085_59864893_59865006_59867664_59867811_59874268_59874385_59937165
transcript_7727.nic	chr11	-	3726	19	NIC	ENSMUSG00000020538.16	novel	4299	19	NA	NA	-30	-508	combination_of_known_junctions	FALSE	canonical	3	238	junction_18	63.0911793643156	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTCAGTTTTGTTTATCTGG	5286	False	NA	-4	True	ATTAAA	-19	NA	60101248	60090422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_60090978_60091251_60091364_60091460_60091662_60092071_60092238_60092405_60092539_60092621_60092732_60092984_60093088_60093587_60093757_60093924_60094092_60094171_60094434_60094624_60094804_60094896_60095093_60095212_60095428_60095947_60096060_60096681_60096904_60096998_60097137_60097220_60097400_60097663_60098084_60101161
transcript_7729.known	chr11	+	1917	14	FSM	ENSMUSG00000056598.17	ENSMUST00000108723.9	1917	14	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_8	9.60892090438596	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTGGTGTCAGTATTCTC	3421	False	NA	NA	False	AATATA	-22	NA	60244154	60285167	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_60244259_60244927_60245027_60249443_60249643_60254289_60254407_60255691_60255859_60261294_60261442_60265903_60266024_60266619_60266733_60268635_60268811_60275039_60275172_60278118_60278190_60279638_60279763_60284522_60284655_60284950
transcript_773.known	chr1	+	2023	9	FSM	ENSMUSG00000043015.16	ENSMUST00000185483.7	2023	9	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_5	9.4794184948234	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTTAATGTTTTGATAAG	NA	False	NA	NA	False	ATTAAA	-21	NA	52669905	52689795	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_52670011_52676523_52676640_52679987_52680220_52680329_52680403_52681477_52681572_52682326_52682396_52684419_52684646_52687908_52688086_52688864
transcript_7733.known	chr11	+	2438	8	FSM	ENSMUSG00000056598.17	ENSMUST00000094140.9	2438	8	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_1	9.45235096552758	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACCCTCCAAAGGACTCTGTG	3421	False	NA	NA	False	NA	NA	NA	60244154	60268104	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_60244259_60244927_60245027_60249443_60249643_60254289_60254407_60255691_60255859_60261294_60261442_60265903_60266024_60266619
transcript_7741.known	chr11	-	1849	8	FSM	ENSMUSG00000042709.16	ENSMUST00000239016.2	1849	8	0	0	0	0	multi-exon	FALSE	canonical	3	286	junction_1	36.2902134443535	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGTGAATCTTTG	NA	False	NA	-12	True	NA	NA	NA	60307925	60291463	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296683_60298119_60298218_60300085_60300232_60300411_60300457_60307576
transcript_7743.known	chr11	-	949	8	FSM	ENSMUSG00000042709.16	ENSMUST00000145532.9	949	8	0	0	0	0	multi-exon	FALSE	canonical	3	57	junction_4	104.174892192242	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCACTGCTGCTGGCACCCTT	NA	False	NA	NA	False	NA	NA	NA	60307844	60292303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296704_60298119_60298218_60300085_60300232_60300411_60300457_60307576
transcript_7744.nic	chr11	-	1586	8	NIC	ENSMUSG00000042709.16	novel	1849	8	NA	NA	1	0	combination_of_known_junctions	FALSE	canonical	3	55	junction_7	134.352870745478	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AAAAAAAAAGTGAATCTTTG	NA	False	NA	-12	True	NA	NA	NA	60307876	60291463	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_60292365_60294662_60294779_60295205_60295319_60296601_60296704_60298119_60298218_60300085_60300232_60300411_60300457_60307811
transcript_775.known	chr1	+	1571	5	FSM	ENSMUSG00000043015.16	ENSMUST00000185790.7	1571	5	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	17.1537167984084	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	ATATATTGAAATTGAAAGTA	NA	False	NA	NA	False	ATTAAA	-24	NA	52669955	52689861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_52670011_52676523_52676640_52684419_52684646_52687908_52688086_52688864
transcript_7752.known	chr11	+	4283	6	FSM	ENSMUSG00000018415.15	ENSMUST00000070681.7	4283	6	0	0	0	0	multi-exon	FALSE	canonical	3	383	junction_3	37.1408131305711	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGTCCAATTTGTAAGTCAAA	NA	False	NA	27	True	AATAAA	-18	NA	60308087	60336103	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_60308671_60315599_60315660_60323158_60323267_60327173_60327276_60329268_60329400_60332804
transcript_7756.known	chr11	+	1788	13	FSM	ENSMUSG00000020537.10	ENSMUST00000018568.4	1788	13	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_10	43.4117879536576	193	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTAGGGAACTTGTGTTTCT	NA	False	NA	40	True	NA	NA	NA	60345416	60359580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_60345570_60347376_60347538_60350267_60350358_60350853_60350915_60351612_60351704_60352147_60352221_60352339_60352431_60352999_60353098_60353383_60353461_60354959_60355049_60355658_60355718_60358510_60358565_60358889
transcript_7763.known	chr11	-	4060	30	FSM	ENSMUSG00000002812.5	ENSMUST00000002889.5	4060	30	0	0	0	0	multi-exon	TRUE	canonical	3	227	junction_19	35.2603363548522	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TCAGTACTTTTAATATTAAA	NA	False	NA	NA	False	ATTAAA	-26	NA	60618089	60604968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_60605274_60605414_60605481_60605856_60605963_60606109_60606217_60606286_60606416_60606491_60606553_60606628_60606784_60606917_60607159_60607230_60607371_60607480_60607670_60607962_60608155_60608234_60608340_60608945_60609118_60609407_60609492_60609671_60609747_60609850_60609934_60610518_60610699_60610831_60611045_60611186_60611324_60611463_60611612_60611903_60611989_60612272_60612431_60612507_60612684_60613120_60613225_60613410_60613573_60613825_60613912_60614190_60614272_60615616_60615689_60615983_60616095_60617952
transcript_7765.known	chr11	+	2522	4	FSM	ENSMUSG00000018599.6	ENSMUST00000018743.5	2522	4	0	0	0	0	multi-exon	FALSE	canonical	3	91	junction_2	26.4701089281224	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATATGTGTAATTCTTGCTG	NA	False	NA	14	True	AATAAA	-17	NA	60619223	60623777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_60619394_60621108_60621262_60621455_60621619_60621741
transcript_7767.known	chr11	+	716	3	FSM	ENSMUSG00000018599.6	ENSMUST00000154890.2	716	3	0	0	0	0	multi-exon	FALSE	canonical	3	114	junction_2	20.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTGGCCTTCGAGCGCAAG	NA	False	NA	NA	False	NA	NA	NA	60619268	60621822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_60619394_60621108_60621619_60621741
transcript_7768.known	chr11	-	3741	19	FSM	ENSMUSG00000002814.16	ENSMUST00000002891.11	3741	19	0	0	0	0	multi-exon	FALSE	canonical	3	121	junction_8	18.9965071513323	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTGGTGGCATTCAGTC	NA	False	NA	1	True	AATAAA	-16	NA	60668191	60630883	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_60631528_60633261_60633951_60634758_60634882_60636642_60636787_60638691_60638858_60638937_60639052_60639991_60640122_60640229_60640416_60641401_60641610_60643108_60643192_60644712_60644788_60646769_60646871_60647103_60647275_60647430_60647575_60650122_60650232_60652557_60652634_60653293_60653368_60654191_60654252_60667747
transcript_7771.known	chr11	-	2858	12	FSM	ENSMUSG00000020534.15	ENSMUST00000018744.15	2858	12	0	0	0	0	multi-exon	TRUE	canonical	3	983	junction_2	78.1211180853749	229	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTCCTCATATTATTTATT	NA	False	NA	-8	True	AATAAA	-19	NA	60702091	60678929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_60680143_60680421_60680533_60680971_60681089_60683774_60683898_60685661_60685779_60688350_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
transcript_7785.known	chr11	-	1283	7	FSM	ENSMUSG00000020534.15	ENSMUST00000173260.8	1283	7	0	0	0	0	multi-exon	FALSE	canonical	3	1109	junction_4	39.2233632191609	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATGATTTGTTAAAATTTTT	NA	False	NA	NA	False	NA	NA	NA	60701917	60688070	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_60688564_60689419_60689502_60692253_60692415_60692741_60692858_60695088_60695235_60697771_60697869_60701729
transcript_7786.known	chr11	+	3544	1	FSM	ENSMUSG00000049323.9	ENSMUST00000102667.5	3544	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGACCTTTTTCAATGGTCAT	NA	False	NA	NA	False	AATAAA	-16	NA	60668349	60671893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_60668300_60671900
transcript_7788.known	chr11	+	3277	7	FSM	ENSMUSG00000042569.14	ENSMUST00000108718.2	3277	7	0	0	0	0	multi-exon	FALSE	canonical	3	194	junction_1	30.3845721085919	166	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAGTTTCTTTAATCCTGTTG	NA	False	NA	NA	False	NA	NA	NA	60721504	60751021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_60721558_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
transcript_7789.nnic	chr11	+	1334	7	NNC	ENSMUSG00000042569.14	novel	1553	7	NA	NA	-29	-277	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_1	85.6536955160462	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGAACCATGTACAGGTCT	NA	False	NA	34	True	AATAAA	-31	NA	60721427	60748972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_60721587_60734990_60735170_60739926_60740031_60742567_60742785_60743244_60743338_60746525_60746679_60748543
transcript_779.known	chr1	-	5767	6	FSM	ENSMUSG00000026102.10	ENSMUST00000027271.9	5767	6	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	1.49666295470958	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAGATTATGGGTATAAAATA	NA	False	NA	NA	False	NA	NA	NA	52856847	52824585	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_52829377_52830846_52831022_52833628_52833830_52836199_52836261_52838443_52838696_52856560
transcript_7797.known	chr11	-	725	3	FSM	ENSMUSG00000043284.13	ENSMUST00000155031.2	725	3	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_1	10	33	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AACTGTCCCGCCTGCCTCTG	7834	False	NA	NA	False	NA	NA	NA	60769613	60755812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_60756175_60766585_60766874_60769538
transcript_7798.known	chr11	-	1457	2	FSM	ENSMUSG00000043284.13	ENSMUST00000062677.12	1457	2	0	0	0	0	multi-exon	FALSE	canonical	3	675	junction_1	0	501	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTGTTCTCTTTTCTGCC	7349	False	NA	-5	True	ATTAAA	-17	NA	60770098	60755277	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_60756175_60769538
transcript_7799.known	chr11	-	4179	3	FSM	ENSMUSG00000018931.4	ENSMUST00000019075.4	4179	3	0	0	0	0	multi-exon	TRUE	canonical	3	156	junction_2	31	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	ACAAAAAAAAAACAAACCAC	6624	False	NA	NA	False	NA	NA	NA	60804638	60793071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_60796948_60797707_60797827_60804454
transcript_78.known	SIRV1	+	464	3	FSM	SIRV1B	SIRV109	464	3	0	0	0	0	multi-exon	FALSE	canonical	3	3494	junction_2	198.5	435	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAACTTCGGCTAATCATGT	NA	False	NA	NA	False	NA	NA	NA	10711	11643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV1_+_10792_10882_11058_11434
transcript_7801.nnic	chr11	-	903	4	NNC	ENSMUSG00000042549.11	novel	1291	2	NA	NA	-4	5190	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_2	3.29983164553722	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAACTGTAATTTTGTTACTG	NA	False	NA	NA	False	NA	NA	NA	60822697	60806552	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_60806785_60807034_60807229_60807774_60807946_60822391
transcript_7804.known	chr11	-	1291	2	FSM	ENSMUSG00000042549.11	ENSMUST00000123544.2	1291	2	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_1	0	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TATTTATGGGTATAAAATTC	NA	False	NA	NA	False	NA	NA	NA	60822693	60811742	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_60812732_60822391
transcript_7807.known	chr11	+	2198	12	FSM	ENSMUSG00000018932.10	ENSMUST00000019076.10	2198	12	0	0	0	0	multi-exon	FALSE	canonical	3	361	junction_6	27.3405217988137	102	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGGCAAGCCTGCTCTTTC	NA	False	NA	NA	False	NA	NA	NA	60822858	60843637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_60823098_60832705_60832773_60833130_60833180_60833976_60834091_60834312_60834433_60835490_60835608_60836336_60836389_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842030_60842589
transcript_7809.known	chr11	+	2096	11	FSM	ENSMUSG00000018932.10	ENSMUST00000130269.2	2096	11	0	0	0	0	multi-exon	FALSE	canonical	2	10	junction_6	128.562980674843	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AATCGTGTGAGACTGACTGT	NA	False	NA	NA	False	NA	NA	NA	60822891	60843620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_60823098_60832705_60832773_60833130_60833180_60833976_60834091_60834312_60834433_60835490_60835608_60837469_60837598_60837936_60838015_60840746_60840887_60841983_60842030_60842589
transcript_781.known	chr1	+	1830	14	FSM	ENSMUSG00000041426.13	ENSMUST00000044478.7	1830	14	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_5	8.39836557781919	90	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TAAAAGTTCTGTCTCCAGAA	NA	False	NA	NA	False	AAAAAG	-12	NA	52884204	52960145	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_52884304_52892826_52892870_52899186_52899325_52901426_52901512_52904707_52904789_52908064_52908118_52924261_52924341_52940346_52940493_52942005_52942093_52943800_52943860_52944529_52944612_52952889_52953010_52955795_52955830_52959421
transcript_7811.known	chr11	+	764	3	FSM	ENSMUSG00000010142.13	ENSMUST00000137832.8	764	3	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	4.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAGGCAGATAGCTGAGTG	NA	False	NA	NA	False	NA	NA	NA	61033286	61038759	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_61033356_61037666_61037844_61038241
transcript_7812.nic	chr11	+	1445	9	ISM	ENSMUSG00000019102.11	ENSMUST00000019246.4	1729	11	4654	0	4654	0	3prime_fragment	TRUE	canonical	2	6	junction_2	5.14629721255973	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGCATGCAATGCTTCTTTT	NA	False	NA	NA	False	AATAAA	-21	NA	61104224	61109247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_61104509_61105010_61105097_61105375_61105585_61106315_61106434_61107104_61107247_61107906_61108074_61108488_61108589_61108816_61108948_61109039
transcript_7816.known	chr11	-	3091	10	FSM	ENSMUSG00000010025.20	ENSMUST00000074127.14	3091	10	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	16.3435342295084	40	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATTGTGTGTTAATTTTGA	1333	False	NA	NA	False	AATAAA	-14	NA	61158011	61135678	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_61137148_61139687_61139924_61141768_61141869_61144449_61144617_61147564_61147707_61149566_61149685_61153044_61153254_61155071_61155158_61155889_61156122_61157679
transcript_7820.nnic	chr11	-	1818	10	NNC	ENSMUSG00000069855.10	novel	2377	17	NA	NA	23279	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_9	5.59982363037962	8	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAAATGTGTGCTGAGAATAT	NA	False	NA	NA	False	AATAAA	-13	NA	61210131	61192456	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_61193266_61193526_61193582_61194746_61194842_61198357_61198491_61199691_61199762_61200786_61200863_61201560_61201670_61203615_61203684_61204469_61204584_61209842
transcript_7821.known	chr11	-	2639	17	FSM	ENSMUSG00000010122.15	ENSMUST00000010267.10	2639	17	0	0	0	0	multi-exon	FALSE	canonical	2	6	junction_16	9.25675429078681	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCTGGGCTGTAGATTATTA	NA	False	NA	-1	True	ATTAAA	-18	NA	61268907	61234226	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_61235355_61239484_61239558_61240270_61240366_61243487_61243621_61243891_61243962_61250177_61250254_61250345_61250455_61253512_61253581_61253652_61253767_61253848_61253947_61254219_61254318_61258498_61258544_61260076_61260120_61260943_61261093_61262581_61262651_61264180_61264283_61268738
transcript_7829.known	chr11	-	3019	7	FSM	ENSMUSG00000001034.18	ENSMUST00000079080.13	3019	7	0	0	0	0	multi-exon	FALSE	canonical	3	175	junction_5	27.9861076647365	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTGCGTCATTTTTGGGGT	NA	False	NA	1	True	AATACA	-19	NA	61385122	61379637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_61380097_61380189_61380324_61380674_61381331_61381433_61382513_61383729_61383896_61384472_61384781_61384905
transcript_7830.known	chr11	-	674	1	FSM	ENSMUSG00000060808.5	ENSMUST00000137010.2	674	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	2	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCTCAGTTTTCTGGAGGGC	NA	False	NA	NA	False	AATAAA	-14	NA	61395885	61395211	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_61395200_61395900
transcript_7833.known	chr11	+	817	7	FSM	ENSMUSG00000001039.13	ENSMUST00000102657.10	817	7	0	0	0	0	multi-exon	FALSE	canonical	3	315	junction_4	19.5739339144917	186	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCCTTCATTTCTTG	NA	False	NA	23	True	AATAAA	-23	NA	61395969	61403757	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_61396098_61397169_61397239_61398453_61398566_61399897_61399995_61400295_61400359_61403197_61403266_61403477
transcript_7834.nnic	chr11	+	592	7	NNC	ENSMUSG00000001039.13	novel	817	7	NA	NA	-17	4013	at_least_one_novel_splicesite	FALSE	canonical	3	7	junction_6	127.20019217316	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTCCCAAGTTGCTTTGGT	NA	False	NA	NA	False	NA	NA	NA	61396011	61407770	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_61396098_61397169_61397239_61398453_61398566_61399897_61399995_61400295_61400359_61403197_61403266_61407673
transcript_7836.known	chr11	+	594	6	FSM	ENSMUSG00000001039.13	ENSMUST00000155176.8	594	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	136.509926379	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGGGCCTTCATTTCTTG	NA	False	NA	23	True	AATAAA	-23	NA	61396080	61403757	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_61396098_61397169_61397239_61399897_61399995_61400295_61400359_61403197_61403266_61403477
transcript_7839.known	chr11	-	4317	11	FSM	ENSMUSG00000001036.18	ENSMUST00000178202.8	4317	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_9	137.591569509182	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGTGGGTTTTGGCTGTGTC	NA	False	NA	-1	True	TATAAA	-24	NA	61470513	61408075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61425403_61425440_61426096_61426210_61436975_61437738_61456647_61456721_61470392
transcript_784.known	chr1	+	736	7	FSM	ENSMUSG00000041426.13	ENSMUST00000161125.8	736	7	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_5	9.8488578017961	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTCGGGATGTATGTCACA	NA	False	NA	NA	False	AATAAA	-22	NA	52884202	52924496	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_52884304_52892826_52892870_52899186_52899325_52901426_52901512_52904707_52904789_52908064_52908118_52924261
transcript_7843.known	chr11	-	4207	9	FSM	ENSMUSG00000001036.18	ENSMUST00000108713.8	4207	9	0	0	0	0	multi-exon	FALSE	canonical	3	259	junction_6	30.1330383466387	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	False	NA	0	True	TATAAA	-25	NA	61470511	61408074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61436975_61437738_61470392
transcript_7846.nnic	chr11	-	3446	8	NIC	ENSMUSG00000001036.18	novel	4207	9	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	14	junction_7	109.403204818185	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGGGTTTTGGCTGTGTCC	NA	False	NA	0	True	TATAAA	-25	NA	61470512	61408074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_61410534_61412484_61412701_61413231_61413319_61413854_61414020_61423343_61423519_61424396_61424508_61426096_61426210_61470392
transcript_785.known	chr1	-	3641	2	FSM	ENSMUSG00000043629.13	ENSMUST00000050567.11	3641	2	0	0	0	0	multi-exon	FALSE	canonical	3	220	junction_1	0	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCTCAGTCCTCATTT	680	False	NA	-5	True	AATAAA	-14	NA	52992003	52961482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_52964894_52991773
transcript_7854.known	chr11	+	1662	5	FSM	ENSMUSG00000004837.3	ENSMUST00000004959.3	1662	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.5	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTTTCTCCCCATATCTGAC	NA	False	NA	NA	False	AATAAA	-22	NA	61544090	61563610	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_61544251_61551047_61551146_61555010_61555134_61560661_61560831_61562498
transcript_7856.nic	chr11	-	1946	13	NIC	ENSMUSG00000020528.15	novel	1837	12	NA	NA	12	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_11	72.6714447970376	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	228	False	NA	-7	True	AATAAA	-22	NA	61652902	61620479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652305_61652401_61652779
transcript_7858.nic	chr11	-	1874	13	NIC	ENSMUSG00000020528.15	novel	1837	12	NA	NA	-54	-138	combination_of_known_junctions	FALSE	canonical	3	23	junction_11	72.6714447970376	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CCTAGAATCAAAAAGCTACT	162	False	NA	NA	False	AATAAA	-19	NA	61652968	61620617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652305_61652401_61652779
transcript_786.known	chr1	-	3565	2	FSM	ENSMUSG00000043629.13	ENSMUST00000114492.8	3565	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTCTCTCAGTCCTCATTT	174	False	NA	-5	True	AATAAA	-14	NA	52992509	52961482	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_52964894_52992355
transcript_7860.known	chr11	-	1837	12	FSM	ENSMUSG00000020528.15	ENSMUST00000004955.14	1837	12	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_11	44.7137821487915	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	242	False	NA	-7	True	AATAAA	-22	NA	61652888	61620479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61647407_61647504_61652779
transcript_7864.known	chr11	-	1771	11	FSM	ENSMUSG00000020528.15	ENSMUST00000168115.8	1771	11	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_10	57.9565354382058	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTATGTGGATAGTTGTTCT	216	False	NA	-3	True	AATAAA	-26	NA	61652914	61620475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61646235_61646289_61647020_61647172_61652779
transcript_7865.known	chr11	-	1734	11	FSM	ENSMUSG00000020528.15	ENSMUST00000151966.8	1734	11	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_8	65.5872701063248	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	292	False	NA	-7	True	AATAAA	-22	NA	61652838	61620479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61647020_61647172_61647407_61647504_61652779
transcript_7868.nic	chr11	-	1731	10	NIC	ENSMUSG00000020528.15	novel	1837	12	NA	NA	-17	0	combination_of_known_junctions	FALSE	canonical	3	27	junction_8	77.5972508104078	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTCTGTATGTGGATAGTTG	199	False	NA	-7	True	AATAAA	-22	NA	61652931	61620479	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_61621129_61622250_61622398_61625833_61625905_61627741_61627891_61631771_61631828_61635770_61635887_61639737_61639911_61643692_61643760_61647020_61647172_61652779
transcript_7870.known	chr11	-	3874	15	FSM	ENSMUSG00000047804.16	ENSMUST00000102650.10	3874	15	0	0	0	0	multi-exon	FALSE	canonical	3	123	junction_4	17.9790127081323	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATTTCTTTGTGCATTTTGT	NA	False	NA	NA	False	TTTAAA	-30	NA	61821078	61762132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_61763848_61768132_61768229_61768799_61768853_61777525_61777609_61781063_61781174_61784205_61784380_61787473_61787619_61791135_61791273_61794732_61794857_61795600_61795686_61800673_61800773_61805849_61806408_61806909_61807093_61813607_61813656_61820814
transcript_7874.known	chr11	+	1845	2	FSM	ENSMUSG00000018500.3	ENSMUST00000018644.3	1845	2	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACGCACTGGCTTCTTGCA	8723	False	NA	NA	False	AATAAA	-20	NA	62139809	62157279	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_62140263_62155887
transcript_7877.known	chr11	-	732	5	FSM	ENSMUSG00000014243.6	ENSMUST00000072916.5	732	5	0	0	0	0	multi-exon	TRUE	canonical	3	218	junction_4	57.8986182909402	151	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATCAAGTTATTGAAGT	NA	False	NA	-15	True	AATAAA	-25	NA	62172201	62158049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_62158433_62159529_62159635_62164537_62164641_62167443_62167466_62172082
transcript_7878.nnic	chr11	-	644	3	NIC	ENSMUSG00000014243.6	novel	732	5	NA	NA	-37	0	combination_of_known_splicesites	FALSE	canonical	3	97	junction_2	132	56	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCAGATCAAGTTATTGAAGT	NA	False	NA	-15	True	AATAAA	-25	NA	62172238	62158049	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_62158433_62159529_62159635_62172082
transcript_788.known	chr1	-	646	9	FSM	ENSMUSG00000060715.10	ENSMUST00000072235.10	646	9	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_2	9.08209089362136	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAGAATGGAATTGCTT	NA	False	NA	NA	False	AATAAA	-28	NA	53226795	53197735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_53197948_53202384_53202405_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53224373_53224450_53226712
transcript_7890.nnic	chr11	+	3267	8	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	0	1617	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_7	89.1320964201162	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATAATGATTTGAGAATTA	NA	False	NA	9	True	ATTAAA	-17	NA	62349285	62406860	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403729_62405978_62406501
transcript_7892.known	chr11	+	2174	7	FSM	ENSMUSG00000014245.9	ENSMUST00000014389.6	2174	7	0	0	0	0	multi-exon	TRUE	canonical	3	156	junction_1	58.9736287580211	35	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACGTTTACATAAAGCAGTAT	NA	False	NA	NA	False	GATAAA	-4	NA	62349285	62405243	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_62349521_62364194_62364295_62394504_62394596_62398552_62398621_62400645_62400678_62402963_62403098_62403729
transcript_7897.nnic	chr11	+	2790	4	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53069	1618	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	132.705187037533	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TATAATGATTTGAGAATTAT	NA	False	NA	10	True	ATTAAA	-18	NA	62402502	62406861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_62402636_62402963_62403098_62403729_62405717_62406325
transcript_7898.nnic	chr11	+	2874	4	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53069	1617	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_3	132.705187037533	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTATAATGATTTGAGAATTA	NA	False	NA	9	True	ATTAAA	-17	NA	62402502	62406860	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_62402636_62402963_62403098_62403729_62405978_62406501
transcript_79.known	SIRV10002	+	10001	1	FSM	SIRV10002A	SIRV10002	10001	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	13	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	10001	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV10002_+_0_10000
transcript_7901.nnic	chr11	+	1268	3	NNC	ENSMUSG00000014245.9	novel	2174	7	NA	NA	53069	-513	at_least_one_novel_splicesite	FALSE	canonical	3	92	junction_1	112	29	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGAGCTGGGCCCACACCTTT	NA	False	NA	25	True	AATAAA	-29	NA	62402502	62404730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_62402636_62402963_62403098_62403729
transcript_7906.known	chr11	-	1032	5	FSM	ENSMUSG00000018509.9	ENSMUST00000018653.8	1032	5	0	0	0	0	multi-exon	FALSE	canonical	3	1369	junction_4	69.2639877569867	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTACTATGACATATTTCT	8371	False	NA	-14	True	AATAAA	-19	NA	62430087	62415771	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_62416114_62418317_62418433_62424710_62424781_62427107_62427207_62429681
transcript_7907.known	chr11	+	890	2	FSM	ENSMUSG00000019505.8	ENSMUST00000136938.2	890	2	0	0	0	0	multi-exon	FALSE	canonical	3	711	junction_1	0	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGGCAAGACCATCACCTT	NA	False	NA	NA	False	NA	NA	NA	62442501	62443679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_62442678_62442965
transcript_7908.known	chr11	+	1499	2	FSM	ENSMUSG00000019505.8	ENSMUST00000019649.4	1499	2	0	0	0	0	multi-exon	FALSE	canonical	3	35417	junction_1	0	12626	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCACTTGTGAAAT	NA	False	NA	25	True	AATAAA	-24	NA	62441996	62444039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_62442422_62442965
transcript_7909.nic	chr11	+	2716	15	ISM	ENSMUSG00000018507.17	ENSMUST00000018651.14	2909	16	1350	216	-237	0	3prime_fragment	FALSE	canonical	1	1	junction_1	4.86553896169326	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATAACCAAGTCTTCTAGAAG	8091	False	NA	9	True	TATAAA	-11	NA	62466713	62491125	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_62466952_62469128_62469422_62471997_62472132_62473668_62473960_62475201_62475501_62480476_62480651_62480988_62481145_62481732_62481832_62483051_62483123_62483576_62483743_62484978_62485046_62485748_62486078_62487735_62487864_62489059_62489140_62490934
transcript_7913.known	chr11	+	462	5	FSM	ENSMUSG00000086841.2	ENSMUST00000131787.2	462	5	0	0	0	0	multi-exon	FALSE	canonical	3	3662	junction_1	404.852056311932	3581	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATTGCCAGTGTTTTGGATG	NA	False	NA	NA	False	AATAAA	-18	NA	62493702	62495633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_62493850_62494060_62494109_62494422_62494473_62495228_62495293_62495480
transcript_7914.known	chr11	-	567	4	FSM	ENSMUSG00000046417.15	ENSMUST00000143262.2	567	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	67.1532244613433	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGGCAACCGACTGACCCG	5944	False	NA	NA	False	NA	NA	NA	62538875	62496852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_62497073_62500028_62500142_62511259_62511389_62538770
transcript_7917.nnic	chr11	+	1327	3	NNC	ENSMUSG00000048497.12	novel	343	2	NA	NA	4	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	7.5	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	NA	False	NA	2	True	NA	NA	NA	62539493	62557180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_62539643_62555495_62556063_62556569
transcript_7918.nnic	chr11	+	1361	3	NNC	ENSMUSG00000048497.12	novel	589	2	NA	NA	10	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	8	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACTGAGTCTGTGTCTGGTT	NA	False	NA	2	True	NA	NA	NA	62539499	62557180	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_62539683_62555495_62556063_62556569
transcript_7919.known	chr11	+	343	2	FSM	ENSMUSG00000048497.12	ENSMUST00000062860.5	343	2	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	0	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTCGGTCTCTTCGCCCTCA	NA	False	NA	NA	False	NA	NA	NA	62539489	62555685	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_62539643_62555495
transcript_7920.known	chr11	+	589	2	FSM	ENSMUSG00000048497.12	ENSMUST00000155759.3	589	2	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_1	0	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAGTAACAGGACAGACGC	NA	False	NA	NA	False	NA	NA	NA	62539660	62556062	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_62539683_62555495
transcript_7922.known	chr11	-	3051	6	FSM	ENSMUSG00000047342.18	ENSMUST00000054654.13	3051	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_3	11.4262854856686	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGCAGGTTTTTAGTTTTTT	NA	False	NA	NA	False	AATAAA	-17	NA	62680288	62669212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_62671726_62674497_62674588_62675704_62675820_62678784_62678871_62679755_62679916_62680201
transcript_7925.nnic	chr11	-	1678	5	NIC	ENSMUSG00000047342.18	novel	3051	6	NA	NA	-1	0	combination_of_known_splicesites	FALSE	canonical	3	15	junction_2	17.8535710713571	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCCTGGGGTGTGTCTGTGTG	NA	False	NA	-5	True	AATAGA	-16	NA	62680248	62670430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_62671726_62674497_62674588_62678784_62678871_62679755_62679916_62680201
transcript_7926.known	chr11	-	641	5	FSM	ENSMUSG00000047342.18	ENSMUST00000145474.8	641	5	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_2	12.1243556529821	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTAAACATTTTTTCACTC	NA	False	NA	NA	False	AATAAA	-15	NA	62680235	62674341	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_62674588_62675704_62675820_62678784_62678871_62679755_62679916_62680201
transcript_7927.known	chr11	+	3906	6	FSM	ENSMUSG00000047821.17	ENSMUST00000055006.12	3906	6	0	0	0	0	multi-exon	TRUE	canonical	3	37	junction_4	2.33238075793812	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TATTTTTTTGCTAGTATTTG	NA	False	NA	NA	False	TTTAAA	-5	NA	62711056	62733762	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_62711826_62719928_62720025_62724804_62725039_62727504_62727671_62728060_62728157_62731217
transcript_793.nnic	chr1	-	666	9	NNC	ENSMUSG00000060715.10	novel	646	9	NA	NA	3	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_2	14.6452850774575	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAGAATGGAATTGCTT	NA	False	NA	NA	False	AATAAA	-28	NA	53226792	53197735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_53197948_53202384_53202428_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53224373_53224450_53226712
transcript_7930.nnic	chr11	+	1856	7	NNC	ENSMUSG00000014177.11	novel	1784	7	NA	NA	-20	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_2	179.477637108979	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGATGTGTGGTCCCATT	9221	False	NA	10	True	TATAAA	-18	NA	62770260	62786011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_62770422_62772762_62772846_62774400_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
transcript_7931.known	chr11	+	1784	7	FSM	ENSMUSG00000014177.11	ENSMUST00000014321.5	1784	7	0	0	0	0	multi-exon	FALSE	canonical	3	376	junction_1	45.7666181111663	484	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGATGTGTGGTCCCATT	9241	False	NA	10	True	TATAAA	-18	NA	62770280	62786011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_62770422_62772762_62772846_62774452_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
transcript_7935.nic	chr11	+	1856	7	NIC	ENSMUSG00000014177.11	novel	1784	7	NA	NA	14	0	combination_of_known_junctions	FALSE	canonical	3	33	junction_1	171.994831963702	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTAGATGTGTGGTCCCATT	9290	False	NA	10	True	TATAAA	-18	NA	62770329	62786011	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_62770543_62772762_62772846_62774452_62774598_62775901_62775992_62777014_62777147_62782767_62782897_62784947
transcript_7941.known	chr11	-	2915	7	FSM	ENSMUSG00000042148.9	ENSMUST00000049091.9	2915	7	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_1	27.1272720502613	194	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGAGCGTGTGTCCTGTGT	5007	False	NA	-4	True	AATAAA	-14	NA	63970292	63853452	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_63855355_63867069_63867303_63884711_63884783_63936052_63936178_63962343_63962663_63964362_63964497_63970161
transcript_7944.known	chr11	+	901	2	FSM	ENSMUSG00000087497.8	ENSMUST00000135037.8	901	2	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTTGTTTCATGTTTCTTA	4234	False	NA	NA	False	AATAAA	-22	NA	63970309	63974085	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_63970604_63973478
transcript_7945.known	chr11	+	2771	25	FSM	ENSMUSG00000020549.15	ENSMUST00000071891.12	2771	25	0	0	0	0	multi-exon	FALSE	canonical	3	56	junction_24	61.5767221304718	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACTCTTGACAACAGTTTGTA	NA	False	NA	10	True	AATAAA	-18	NA	64869863	64892895	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820_64892040_64892657
transcript_7946.known	chr11	+	2884	24	FSM	ENSMUSG00000020549.15	ENSMUST00000101049.9	2884	24	0	0	0	0	multi-exon	FALSE	canonical	3	305	junction_18	22.4427858997362	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGCTTCAGTGTGGGGTC	NA	False	NA	15	True	AATAAA	-15	NA	64869899	64892426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883186_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820
transcript_7947.known	chr11	+	3329	24	FSM	ENSMUSG00000020549.15	ENSMUST00000140369.2	3329	24	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_13	71.3428581053949	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTACTCTTGACAACAGTTTG	NA	False	NA	8	True	AATAAA	-16	NA	64869916	64892893	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_64870158_64870543_64870595_64870732_64870804_64871433_64871499_64872442_64872501_64873581_64873651_64874419_64874552_64876388_64876448_64878096_64878156_64878233_64878307_64878857_64878971_64880178_64880275_64883046_64883181_64883264_64883351_64885061_64885181_64886131_64886229_64888693_64888833_64889166_64889206_64889333_64889444_64889962_64890063_64890143_64890265_64890511_64890591_64891121_64891267_64891820
transcript_7948.known	chr11	-	3695	11	FSM	ENSMUSG00000033352.12	ENSMUST00000046963.10	3695	11	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_10	28.4703354388388	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GAAGTTTCTGGTTCTTTTCT	NA	False	NA	-1	True	ATTAAA	-42	NA	65679123	65579068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_65581631_65582553_65582600_65584247_65584397_65587113_65587192_65597809_65597938_65600757_65600810_65603003_65603124_65610309_65610430_65626017_65626193_65647094_65647198_65678961
transcript_7950.known	chr11	+	2270	7	FSM	ENSMUSG00000018347.17	ENSMUST00000071465.9	2270	7	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_5	5.11262055005932	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTTCCTTGTAGCTGCCTT	NA	False	NA	14	True	AATAAA	-20	NA	65698000	65720064	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_65698088_65705190_65705678_65706743_65706952_65707314_65707407_65712755_65712841_65713650_65713765_65718867
transcript_7952.nnic	chr11	+	1603	7	NNC	ENSMUSG00000050270.13	novel	1597	6	NA	NA	-28	6	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_6	9.01849950564579	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTACTGGGGAGAATTACTAG	3890	False	NA	NA	False	NA	NA	NA	66915951	66926144	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_66916098_66916734_66916765_66920791_66920853_66921887_66922012_66923006_66923067_66924934_66925890_66925917
transcript_7954.known	chr11	+	1597	6	FSM	ENSMUSG00000050270.13	ENSMUST00000061786.6	1597	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_4	4.45421149026402	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGCCAATTACTGGGGAGAAT	3918	False	NA	NA	False	NA	NA	NA	66915979	66926138	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_66916098_66916734_66916765_66920791_66920853_66921887_66922012_66923006_66923067_66924934
transcript_7959.known	chr11	-	1283	5	FSM	ENSMUSG00000020910.17	ENSMUST00000116363.2	1283	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	11.1579568022107	61	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCTGTTTGTGTACAAA	NA	False	NA	2	True	CATAAA	-28	NA	66943396	66928866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_66929272_66931044_66931162_66932306_66932934_66942506_66942605_66943360
transcript_7960.known	chr11	-	1531	5	FSM	ENSMUSG00000020910.17	ENSMUST00000146338.8	1531	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	39.9710832978042	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCATGTGGGCATATAC	NA	False	NA	NA	False	AATAAA	-10	NA	66943420	66928730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_66929272_66931044_66931162_66932218_66932934_66942506_66942605_66943360
transcript_7965.nic	chr11	-	1370	4	NIC	ENSMUSG00000020910.17	novel	1531	5	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_3	43.2229362980145	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGACTCATGTGGGCATATAC	NA	False	NA	NA	False	AATAAA	-10	NA	66943445	66928730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_66929272_66931044_66931162_66932306_66932934_66943360
transcript_7968.nic	chr11	-	1234	4	NIC	ENSMUSG00000020910.17	novel	1283	5	NA	NA	-25	0	combination_of_known_junctions	FALSE	canonical	2	8	junction_3	43.2229362980145	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCTGTTTGTGTACAAA	NA	False	NA	2	True	CATAAA	-28	NA	66943445	66928866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_66929272_66931044_66931162_66932306_66932934_66943360
transcript_7970.nic	chr11	-	2513	4	NIC	ENSMUSG00000020910.17	novel	1283	5	NA	NA	-61	0	intron_retention	FALSE	canonical	3	79	junction_3	12.2474487139159	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATTCTGTTTGTGTACAAA	NA	False	NA	2	True	CATAAA	-28	NA	66943481	66928866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_66929272_66931044_66932934_66942506_66942605_66943360
transcript_7972.nic	chr11	+	1795	7	NIC	ENSMUSG00000069844.13	novel	2412	6	NA	NA	-37	-10	combination_of_known_junctions	FALSE	canonical	0	0	junction_6	109.193126564308	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCTTGGTACTTACATGAA	NA	False	NA	4	True	AATAAA	-22	NA	66943458	66956388	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_66943743_66944600_66944692_66946556_66946755_66947340_66947434_66949152_66949269_66954731_66955453_66956096
transcript_7974.known	chr11	+	2412	6	FSM	ENSMUSG00000069844.13	ENSMUST00000092996.5	2412	6	0	0	0	0	multi-exon	FALSE	canonical	3	241	junction_2	26.3469163281019	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CTTACATGAAGCCTAATGAA	NA	False	NA	14	True	AATAAA	-32	NA	66943495	66956398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_66943743_66944600_66944692_66946556_66946755_66947340_66947434_66949152_66949269_66954731
transcript_7976.known	chr11	+	2186	6	FSM	ENSMUSG00000069844.13	ENSMUST00000108690.10	2186	6	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_2	119.607023205161	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	95	AAAAAAAAAAAAAAAAAAAG	NA	False	NA	NA	False	NA	NA	NA	66943495	66956157	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_66943743_66944600_66944692_66946541_66946755_66947340_66947434_66949152_66949269_66954731
transcript_7977.nic	chr11	+	2839	17	ISM	ENSMUSG00000020908.15	ENSMUST00000108689.8	6031	41	15143	0	15143	0	3prime_fragment	TRUE	canonical	2	11	junction_1	5.51949669354009	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGGTTTGTTTTGTCTTGT	NA	False	NA	6	True	AATAAA	-17	NA	66984268	66993112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_66984413_66984492_66984584_66985299_66985690_66985780_66985908_66986834_66986954_66987126_66987324_66987700_66987885_66988704_66988871_66989403_66989529_66990003_66990313_66990425_66990630_66990701_66990828_66991623_66991795_66991913_66992019_66992163_66992260_66992353_66992492_66992965
transcript_7978.nic	chr11	+	4011	25	ISM	ENSMUSG00000060180.13	ENSMUST00000081911.12	5817	39	17698	-84	17698	0	3prime_fragment	FALSE	canonical	3	52	junction_14	14.9210887300119	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATCCATGCTCTGCTGTGTT	NA	False	NA	22	True	AATAAA	-18	NA	67235626	67262412	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_67235705_67235806_67235895_67238714_67238833_67239625_67239750_67240395_67240533_67241059_67241316_67242779_67243023_67244398_67244576_67245472_67245619_67245727_67245819_67246628_67247019_67248933_67249061_67249146_67249266_67251106_67251304_67252074_67252259_67253230_67253397_67254012_67254138_67255287_67255597_67255677_67255882_67257978_67258105_67258382_67258554_67259930_67260036_67260134_67260231_67261745_67261881_67262313
transcript_7980.known	chr11	-	2199	14	FSM	ENSMUSG00000020904.12	ENSMUST00000021287.12	2199	14	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_9	5.45557637738374	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGATCTCTTTTCTGTGTCTC	NA	False	NA	NA	False	AATAAA	-18	NA	67856468	67815633	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_67816095_67817204_67817317_67818134_67818238_67821554_67821707_67822549_67822696_67826649_67826799_67829742_67829914_67830604_67830706_67836178_67836296_67837123_67837224_67840393_67840523_67844306_67844444_67844797_67844998_67856347
transcript_7984.known	chr11	+	4394	8	FSM	ENSMUSG00000020903.14	ENSMUST00000021285.14	4394	8	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_1	20.1626043021455	185	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAACTGGTACTTTTGTTC	NA	False	NA	NA	False	TATAAA	-19	NA	67857018	68097974	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_67857344_67860597_67860698_67864058_67864154_67875388_67875500_67902140_67902266_67911731_67911825_68000102_68000205_68094531
transcript_7990.known	chr11	+	1638	5	FSM	ENSMUSG00000020903.14	ENSMUST00000021286.11	1638	5	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_4	126.986957991756	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCATCTCTGGAGTGTTGTGT	NA	False	NA	NA	False	AATAAA	-15	NA	67857294	67878433	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_67857344_67860597_67860698_67864058_67864154_67875388_67875500_67877150
transcript_7991.known	chr11	+	1497	3	FSM	ENSMUSG00000020903.14	ENSMUST00000108675.2	1497	3	0	0	0	0	multi-exon	FALSE	canonical	3	260	junction_1	29.5	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAACAATGGGGGCCTTCTTT	NA	False	NA	NA	False	AATAAA	-15	NA	67857305	67865417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_67857344_67860597_67860698_67864058
transcript_7994.known	chr11	+	1811	2	FSM	ENSMUSG00000020900.16	ENSMUST00000139059.2	1811	2	0	0	0	0	multi-exon	FALSE	canonical	3	223	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGCGCCTGCTCTGTTTAC	681	False	NA	-77	True	AATAAA	-18	NA	68705187	68707370	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_68705381_68705752
transcript_7996.nic	chr11	-	2417	10	NIC	ENSMUSG00000018736.15	novel	2382	9	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	25	junction_2	74.7099742130432	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCGAGATTGCTTTATTT	NA	False	NA	NA	False	AATAAA	-24	NA	68743961	68712259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_68713492_68716995_68717031_68720740_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
transcript_7997.known	chr11	-	2382	9	FSM	ENSMUSG00000018736.15	ENSMUST00000018880.14	2382	9	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_5	15.9530561335438	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGGTCGAGATTGCTTTATTT	NA	False	NA	NA	False	AATAAA	-24	NA	68743961	68712259	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_68713492_68720740_68720893_68724179_68724272_68726975_68727150_68730696_68730834_68732845_68732995_68734646_68734801_68736152_68736251_68743767
transcript_8.known	ERCC-00025	+	1978	1	FSM	ERCC-00025A	DQ883689	1978	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	3	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00025_+_0_2000
transcript_800.nnic	chr1	-	557	8	NIC	ENSMUSG00000060715.10	novel	646	9	NA	NA	13	0	combination_of_known_splicesites	FALSE	canonical	3	26	junction_7	12.1504178142657	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAACAGAATGGAATTGCTT	NA	False	NA	NA	False	AATAAA	-28	NA	53226782	53197735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_53197948_53202384_53202405_53209396_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53226712
transcript_8003.known	chr11	+	657	4	FSM	ENSMUSG00000060938.15	ENSMUST00000101014.9	657	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6885.97448925471	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTCATTAAAGACTGCTTA	NA	False	NA	9	True	AAGAAA	-41	NA	68792435	68795336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_68792639_68793095_68793263_68794004_68794146_68795190
transcript_8004.known	chr11	+	606	4	FSM	ENSMUSG00000060938.15	ENSMUST00000167436.3	606	4	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_1	7534.13486886333	63	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTCCTGTCTTGTGTGGTGT	NA	False	NA	32	True	ATTAAA	-13	NA	68792460	68795359	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_68792584_68793095_68793269_68794004_68794146_68795190
transcript_8005.known	chr11	+	526	4	FSM	ENSMUSG00000060938.15	ENSMUST00000073471.13	526	4	0	0	0	0	multi-exon	FALSE	canonical	3	13360	junction_1	1585.12172683642	12542	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTCCTGTCTTGTGTGGTGTT	NA	False	NA	33	True	ATTAAA	-14	NA	68792408	68795360	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_68792451_68793095_68793269_68794004_68794146_68795190
transcript_8007.nnic	chr11	+	903	3	Antisense	novelGene_ENSMUSG00000052921.14_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	2	8	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTCTGTCTTAGCTGCATCC	NA	False	NA	NA	False	NA	NA	NA	68847579	68853318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr11_+_68847865_68848219_68848631_68853111
transcript_8010.known	chr11	+	1828	5	FSM	ENSMUSG00000018740.15	ENSMUST00000102606.10	1828	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_2	4.96865172858795	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GAGGAAGTGTCTTATGTTTA	5558	False	NA	6	True	CATAAA	-18	NA	68858956	68863342	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_68859864_68861549_68861616_68862009_68862163_68862494_68862630_68862775
transcript_8013.known	chr11	-	820	5	FSM	ENSMUSG00000032892.15	ENSMUST00000038644.5	820	5	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_2	47.2989164780759	993	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCCTTCAAATCTA	7236	False	NA	-2	True	AATAAA	-22	NA	68864669	68863309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_68863568_68863768_68863855_68863942_68864100_68864266_68864384_68864467
transcript_8018.known	chr11	-	967	4	FSM	ENSMUSG00000032892.15	ENSMUST00000132093.8	967	4	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_1	54.6036221834738	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGTGCCTTCAAATCTA	7290	False	NA	-2	True	AATAAA	-22	NA	68864615	68863309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_68863855_68863942_68864100_68864266_68864384_68864467
transcript_8019.nic	chr11	-	1026	4	NIC	ENSMUSG00000032892.15	novel	820	5	NA	NA	-43	0	intron_retention	FALSE	canonical	3	482	junction_2	50.8876758710354	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATAATTTCTGTGCCTTCAAA	7193	False	NA	-6	True	AATAAA	-18	NA	68864712	68863313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_68863568_68863768_68863855_68863942_68864384_68864467
transcript_802.nic	chr1	-	974	7	ISM	ENSMUSG00000060715.10	ENSMUST00000072235.10	646	9	3	11098	3	-11075	5prime_fragment	FALSE	canonical	3	38	junction_5	7.73879117749593	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTAATACTATTGTTTTATAT	NA	False	NA	NA	False	AATAAA	-17	NA	53226792	53208833	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_53209420_53209546_53209618_53216928_53216987_53221001_53221055_53221653_53221704_53224373_53224450_53226712
transcript_8024.known	chr11	-	568	3	FSM	ENSMUSG00000032892.15	ENSMUST00000143444.8	568	3	0	0	0	0	multi-exon	FALSE	canonical	3	482	junction_2	39.5	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAATTTCTGTGCCTTCAAAT	7736	False	NA	-5	True	AATAAA	-19	NA	68864169	68863312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_68863568_68863768_68863855_68863942
transcript_8025.nnic	chr11	-	1578	12	NNC	ENSMUSG00000020899.17	novel	2129	11	NA	NA	9	-1968	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	133.957437424438	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGATTATTTTGATTGGTTT	NA	False	NA	NA	False	ATTAAA	-2	NA	68899268	68885775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_68885943_68888489_68888619_68888738_68888871_68890834_68890964_68891070_68891196_68891274_68891416_68891699_68891806_68891932_68892123_68892558_68892665_68893305_68893442_68894521_68894699_68899228
transcript_8026.known	chr11	+	3978	23	FSM	ENSMUSG00000020898.19	ENSMUST00000116359.3	3978	23	0	0	0	0	multi-exon	FALSE	canonical	3	218	junction_14	52.8328292942908	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGACCTGTGTTCATCTCTGA	5272	False	NA	18	True	AATAAA	-18	NA	68906922	68927296	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922236_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
transcript_8028.known	chr11	+	4164	23	FSM	ENSMUSG00000020898.19	ENSMUST00000021278.14	4164	23	0	0	0	0	multi-exon	FALSE	canonical	3	209	junction_14	54.4241833704208	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTTCATCTCTGAGGT	5086	False	NA	21	True	AATAAA	-21	NA	68906736	68927299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_68906992_68911855_68912020_68913202_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922239_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
transcript_8030.known	chr11	+	3976	23	FSM	ENSMUSG00000020898.19	ENSMUST00000152979.8	3976	23	0	0	0	0	multi-exon	FALSE	canonical	3	48	junction_2	94.2205957376466	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTGTGTTCATCTCTGAGGT	5261	False	NA	21	True	AATAAA	-21	NA	68906911	68927299	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_68906992_68911855_68912020_68913218_68913441_68913534_68913747_68914987_68915133_68916899_68917179_68917276_68917406_68918079_68918313_68918429_68918608_68918689_68918891_68920511_68920639_68921309_68921425_68921516_68921833_68921925_68922016_68922236_68922431_68924008_68924098_68924192_68924368_68924784_68924863_68925460_68925606_68925709_68925775_68926330_68926497_68926592_68926720_68926853
transcript_8033.nnic	chr11	+	1800	9	NNC	ENSMUSG00000020897.13	novel	1950	8	NA	NA	-43	0	at_least_one_novel_splicesite	FALSE	canonical	3	91	junction_1	184.266790279746	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	16	True	AATAAA	-26	NA	68936429	68942490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_68936497_68936694_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
transcript_8035.known	chr11	+	1831	9	FSM	ENSMUSG00000020897.13	ENSMUST00000108666.8	1831	9	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	202.492592457107	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	16	True	AATAAA	-26	NA	68936472	68942490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_68936637_68936760_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
transcript_8036.known	chr11	+	1950	8	FSM	ENSMUSG00000020897.13	ENSMUST00000021277.6	1950	8	0	0	0	0	multi-exon	FALSE	canonical	3	581	junction_1	36.6756327936728	220	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACTGTGGTGGTCTGAATAT	NA	False	NA	16	True	AATAAA	-26	NA	68936477	68942490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_68936835_68938610_68938714_68938797_68938868_68938999_68939192_68939331_68939471_68939556_68939706_68941127_68941303_68941725
transcript_8044.known	chr11	+	1862	1	FSM	ENSMUSG00000045176.4	ENSMUST00000051888.4	1862	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	18	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGCTGAGCCTGTTTTTTTGT	NA	False	NA	17	True	ATTAAA	-17	NA	68950542	68952404	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_68950500_68952400
transcript_8045.nnic	chr11	+	737	5	NNC	ENSMUSG00000020895.15	novel	779	5	NA	NA	14	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_4	158.914088425161	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGGCGTATACTATTTTT	4668	False	NA	NA	False	AATAAA	-19	NA	68961652	68963856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248_68963325_68963571
transcript_8046.known	chr11	+	779	5	FSM	ENSMUSG00000020895.15	ENSMUST00000075980.12	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	348	junction_4	23.6893963620857	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCAAGGCGTATACTATTTTT	4647	False	NA	NA	False	AATAAA	-19	NA	68961631	68963856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248_68963346_68963571
transcript_8048.known	chr11	+	1263	4	FSM	ENSMUSG00000020895.15	ENSMUST00000094081.5	1263	4	0	0	0	0	multi-exon	FALSE	canonical	3	354	junction_2	22.0655588845805	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTTGCAAATAGATATTATTC	4652	False	NA	NA	False	AATAAA	-14	NA	68961636	68964119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_68961860_68962049_68962118_68962199_68962301_68963248
transcript_805.known	chr1	-	3054	13	FSM	ENSMUSG00000026098.14	ENSMUST00000027267.14	3054	13	0	0	0	0	multi-exon	FALSE	canonical	3	136	junction_1	15.4495145554804	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTGTTTTCACGTCCAACC	6052	False	NA	NA	False	AATAAA	-18	NA	53336177	53228345	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_53228658_53231258_53231420_53234086_53234218_53235981_53236462_53245720_53246572_53246734_53246879_53247121_53247245_53255389_53255507_53295787_53295952_53306986_53307090_53314228_53314412_53321099_53321252_53336044
transcript_8050.nnic	chr11	+	790	5	NNC	ENSMUSG00000020894.17	novel	2205	5	NA	NA	-4	152	at_least_one_novel_splicesite	FALSE	canonical	3	15	junction_2	45.3706953881027	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTCTGTTTGTAGTTTT	NA	False	NA	8	True	NA	NA	NA	68979343	68981668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_68979454_68979931_68980053_68980401_68980716_68980801_68980854_68981475
transcript_8051.known	chr11	+	2205	5	FSM	ENSMUSG00000020894.17	ENSMUST00000021273.13	2205	5	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_4	21.4126131053639	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATGGTGTCCAAAATCTTTT	NA	False	NA	18	True	AATAAA	-18	NA	68979315	68983210	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_68979454_68979931_68980053_68980556_68980716_68980801_68980854_68981475
transcript_8053.known	chr11	+	1113	4	FSM	ENSMUSG00000020894.17	ENSMUST00000117780.2	1113	4	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_1	8.17856276425687	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAAGGGCCTCTCCCCCAC	NA	False	NA	NA	False	NA	NA	NA	68979335	68981516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_68979454_68979931_68980053_68980556_68980716_68980801
transcript_8055.known	chr11	-	3861	19	FSM	ENSMUSG00000032782.20	ENSMUST00000092973.6	3861	19	0	0	0	0	multi-exon	TRUE	canonical	3	88	junction_15	16.162847964421	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TAATGTTTAAGAATGTTTAA	NA	False	NA	NA	False	AATAAA	-25	NA	69214601	69190312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69190817_69191068_69191142_69193677_69193793_69193919_69194091_69195083_69195148_69196312_69196456_69198768_69199028_69200173_69200337_69200803_69200930_69202160_69202295_69205536_69205684_69206015_69206253_69209771_69209871_69210178_69210296_69210683_69210801_69211643_69211801_69212181_69212246_69212674_69212760_69213515
transcript_8058.nic	chr11	-	1573	2	ISM	ENSMUSG00000032782.20	ENSMUST00000092973.6	3861	19	-126	22086	-126	-6381	5prime_fragment	FALSE	canonical	3	93	junction_1	0	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	GAAAAGAAAAGACGAGAAGA	NA	False	NA	NA	False	NA	NA	NA	69214727	69212398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_69212760_69213515
transcript_8060.known	chr11	+	751	5	FSM	ENSMUSG00000049299.15	ENSMUST00000102602.8	751	5	0	0	0	0	multi-exon	FALSE	canonical	3	239	junction_1	97.8682149627753	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	16	True	AATAAA	-25	NA	69214805	69216619	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69214893_69214983_69215083_69215220_69215292_69215649_69215789_69216264
transcript_8062.known	chr11	+	759	4	FSM	ENSMUSG00000049299.15	ENSMUST00000102601.10	759	4	0	0	0	0	multi-exon	FALSE	canonical	3	452	junction_2	10.7082522694727	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	16	True	AATAAA	-25	NA	69214888	69216619	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69215083_69215220_69215292_69215649_69215789_69216264
transcript_8063.known	chr11	+	628	4	FSM	ENSMUSG00000049299.15	ENSMUST00000060956.13	628	4	0	0	0	0	multi-exon	FALSE	canonical	1	7	junction_3	212.171314429323	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCCTGAGTGTGAGTTC	NA	False	NA	16	True	AATAAA	-25	NA	69214900	69216619	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69215083_69215220_69215292_69215649_69215789_69216383
transcript_8068.known	chr11	+	2538	14	FSM	ENSMUSG00000018470.9	ENSMUST00000018614.3	2538	14	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	7.85293824331087	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACCACGTCTGAAATTGCA	NA	False	NA	11	True	AATAAA	-20	NA	69217083	69223868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69217750_69218945_69218990_69219076_69219115_69219334_69219415_69220675_69220721_69220808_69220854_69221008_69221053_69221222_69221310_69221565_69221652_69221876_69221998_69222087_69222183_69222285_69222407_69222561_69222651_69222891
transcript_8069.nic	chr11	+	1293	3	NIC	ENSMUSG00000018470.9	novel	2126	13	NA	NA	1030	0	intron_retention	FALSE	canonical	3	49	junction_1	1	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CGACCACGTCTGAAATTGCA	NA	False	NA	11	True	AATAAA	-20	NA	69222179	69223868	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_69222407_69222561_69222651_69222891
transcript_8070.known	chr11	+	1026	2	FSM	ENSMUSG00000043419.12	ENSMUST00000218008.2	1026	2	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAGAAAAAAAAAGATGCT	NA	False	NA	NA	False	NA	NA	NA	69231596	69232722	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69231885_69231984
transcript_8071.known	chr11	-	753	4	FSM	ENSMUSG00000044795.13	ENSMUST00000051620.5	753	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	12.1197726417986	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GATGTTGGAGTTTGCCTCTT	NA	False	NA	NA	False	NA	NA	NA	69286159	69284437	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69284695_69285453_69285673_69285797_69285875_69285959
transcript_8074.nic	chr11	+	584	3	NIC	ENSMUSG00000059278.10	novel	671	3	NA	NA	-44	0	combination_of_known_junctions	FALSE	canonical	3	49	junction_1	615.5	47	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286268	69287506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_69286508_69287002_69287187_69287345
transcript_8075.known	chr11	+	671	3	FSM	ENSMUSG00000059278.10	ENSMUST00000144531.2	671	3	0	0	0	0	multi-exon	FALSE	canonical	3	948	junction_1	166	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286472	69287506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69286799_69287002_69287187_69287345
transcript_8076.known	chr11	-	1582	2	FSM	ENSMUSG00000045377.6	ENSMUST00000050140.6	1582	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	70	TGGAAAAAAAAAAAAAAGTC	NA	False	NA	NA	False	AATGAA	-3	NA	69289060	69287344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69288708_69288841
transcript_8077.known	chr11	+	404	2	FSM	ENSMUSG00000059278.10	ENSMUST00000124932.2	404	2	0	0	0	0	multi-exon	FALSE	canonical	3	1280	junction_1	0	170	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGTGTCTGTGTGTAGGT	NA	False	NA	17	True	ATTAAA	-17	NA	69286943	69287506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69287187_69287345
transcript_8079.nnic	chr11	+	975	2	NNC	ENSMUSG00000086591.2	novel	859	2	NA	NA	3753	14	intron_retention	FALSE	canonical	3	26	junction_1	0	24	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CGATGTCTAGAACTTGATTT	2326	False	NA	NA	False	AATAAA	-32	NA	69343126	69344516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_69343301_69343715
transcript_8080.known	chr11	-	3183	5	FSM	ENSMUSG00000003934.6	ENSMUST00000004036.6	3183	5	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	2.17944947177034	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAGAAGGCTGGAAAATGAC	NA	False	NA	1	True	TTTAAA	-7	NA	69451031	69444917	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69447096_69447518_69447624_69447731_69447825_69448025_69448319_69450517
transcript_8081.known	chr11	-	1891	10	FSM	ENSMUSG00000041346.12	ENSMUST00000048139.12	1891	10	0	0	0	0	multi-exon	FALSE	canonical	3	103	junction_6	29.7960143162773	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTCATTGTGTCTGTT	NA	False	NA	-4	True	TATAAA	-15	NA	69470150	69452584	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454263_69454372_69454464_69454684_69454774_69468451_69468564_69469272_69469372_69469495
transcript_8091.nnic	chr11	-	1081	6	NNC	ENSMUSG00000041346.12	novel	1891	10	NA	NA	157	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_5	68.4210493927125	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGAGTCATTGTGTCTGTT	NA	False	NA	-4	True	TATAAA	-15	NA	69454591	69452584	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_69452846_69452947_69453086_69453219_69453324_69453474_69453684_69454129_69454280_69454372
transcript_81.known	SIRV2	-	1971	11	FSM	SIRV2A	SIRV202	1971	11	0	0	0	0	multi-exon	FALSE	canonical	3	173	junction_6	1003.16519576788	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTCGCTCTATAGCTGTATC	NA	False	NA	NA	False	NA	NA	NA	5911	1035	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3326_3665_3826_3966_4095_4338_4480_4687_4801_5788
transcript_8104.known	chr11	+	1822	11	FSM	ENSMUSG00000059552.14	ENSMUST00000108657.4	1822	11	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_10	535.886405873484	132	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATGGTTTTGAGAGGTTGAT	NA	False	NA	16	True	AATAAA	-17	NA	69471230	69482699	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482079
transcript_8105.known	chr11	+	1771	11	FSM	ENSMUSG00000059552.14	ENSMUST00000108658.10	1771	11	0	0	0	0	multi-exon	FALSE	canonical	3	1895	junction_3	134.752402575984	723	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATATGGTTTTGAGAGGTTGA	NA	False	NA	15	True	AATAAA	-16	NA	69471184	69482698	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69471342_69477716_69477800_69478082_69478105_69478197_69478459_69479189_69479374_69479451_69479565_69479966_69480077_69480398_69480536_69480614_69480689_69481481_69481589_69482175
transcript_8115.known	chr11	-	2842	7	FSM	ENSMUSG00000041329.14	ENSMUST00000047889.13	2842	7	0	0	0	0	multi-exon	FALSE	canonical	3	185	junction_6	5.18544972870135	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACACAGAGCCCTGTGTGTG	NA	False	NA	-7	True	AATAAA	-33	NA	69496655	69490561	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69492239_69492350_69492450_69493250_69493308_69493525_69493732_69493832_69493938_69494250_69494380_69496086
transcript_8117.known	chr11	+	800	7	FSM	ENSMUSG00000069835.11	ENSMUST00000092969.2	800	7	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	2.7938424357067	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGCAGCCATTTTGAAG	NA	False	NA	NA	False	AATAAA	-34	NA	69512877	69514696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69512942_69513081_69513159_69513318_69513371_69513532_69513617_69513685_69513788_69513937_69513979_69514316
transcript_8119.known	chr11	+	968	6	FSM	ENSMUSG00000069835.11	ENSMUST00000108656.9	968	6	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	1.72046505340853	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATGCTGCAGCCATTTTGAAG	NA	False	NA	NA	False	AATAAA	-34	NA	69512849	69514696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69513159_69513318_69513371_69513532_69513617_69513685_69513788_69513937_69513979_69514316
transcript_8123.known	chr11	+	1016	4	FSM	ENSMUSG00000069835.11	ENSMUST00000151255.2	1016	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	2.05480466765633	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCCCTGTGCAGTAAGCGTA	NA	False	NA	NA	False	NA	NA	NA	69512877	69514284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69513159_69513318_69513371_69513532_69513617_69513685
transcript_8124.nnic	chr11	+	952	4	NNC	ENSMUSG00000018765.6	novel	2951	17	NA	NA	-59	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	556.054154037376	85	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTCCCATGTTGCC	NA	False	NA	12	True	AATAAA	-15	NA	69523756	69544123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_69523855_69542837_69542900_69543035_69543134_69543429
transcript_8125.nnic	chr11	+	950	4	NNC	ENSMUSG00000018765.6	novel	2951	17	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	556.054154037376	86	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTCCCATGTTGCC	NA	False	NA	12	True	AATAAA	-15	NA	69523780	69544123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_69523877_69542837_69542900_69543035_69543134_69543429
transcript_8126.nnic	chr11	+	826	3	NNC	ENSMUSG00000018765.6	novel	2951	17	NA	NA	-50	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	634.5	83	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTGTTTCCCATGTTGCC	NA	False	NA	12	True	AATAAA	-15	NA	69523765	69544123	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_69523847_69543082_69543134_69543429
transcript_8128.known	chr11	-	1321	7	FSM	ENSMUSG00000018761.15	ENSMUST00000018905.12	1321	7	0	0	0	0	multi-exon	FALSE	canonical	3	557	junction_4	37.1427426738163	575	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTGTTTAGTGTGCATTCT	6761	False	NA	-4	True	AATAAA	-33	NA	69553468	69547522	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69548848_69549391_69549525_69549636_69549703_69553294
transcript_813.known	chr1	+	1723	9	FSM	ENSMUSG00000026096.15	ENSMUST00000135614.8	1723	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	64.608435981689	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGAATCATTTCGTGTTTCA	NA	False	NA	11	True	AATAAA	-31	NA	53352831	53365326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_53353018_53354014_53354259_53357060_53357449_53359101_53359456_53360238_53360370_53360463_53360544_53360654_53360727_53362325_53362430_53365162
transcript_8130.known	chr11	-	971	7	FSM	ENSMUSG00000018761.15	ENSMUST00000148242.8	971	7	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_4	228.446018423026	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAGATCCCTCCTTGTGAGCA	6816	False	NA	NA	False	AGTAAA	-37	NA	69553413	69547852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69548761_69548883_69549391_69549525_69549636_69549703_69553294
transcript_8134.known	chr11	-	646	6	FSM	ENSMUSG00000018761.15	ENSMUST00000125389.2	646	6	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_3	239.282761602252	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCAGAGTCCTCCCCACATGA	6885	False	NA	NA	False	AATAGA	-41	NA	69553344	69547987	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69548155_69548245_69548357_69548550_69548670_69549391_69549525_69549636_69549703_69553294
transcript_8136.known	chr11	+	861	2	FSM	ENSMUSG00000041287.6	ENSMUST00000047373.6	861	2	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_1	0	48	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTATTGTCCCATTTGTAT	NA	False	NA	24	True	ATTAAA	-17	NA	69546139	69547553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69546726_69547278
transcript_8138.known	chr11	-	1230	6	FSM	ENSMUSG00000018774.14	ENSMUST00000018918.12	1230	6	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_5	17.4653943556966	74	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCCTTTCTTTCCTCATTAA	3250	False	NA	-1	True	AATAAA	-19	NA	69556979	69555038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69555331_69555576_69555748_69555860_69555940_69556072_69556193_69556328_69556763_69556845
transcript_8140.known	chr11	-	612	5	FSM	ENSMUSG00000018774.14	ENSMUST00000154124.2	612	5	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_4	48.9540600971972	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCAACAGTTACCTTCCTTCT	3341	False	NA	-94	True	NA	NA	NA	69556888	69555131	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69555331_69555576_69555748_69555860_69555940_69556072_69556193_69556845
transcript_815.known	chr1	+	1868	8	FSM	ENSMUSG00000026096.15	ENSMUST00000027265.10	1868	8	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_2	14.7537611946159	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TATTGGCCTTGTGTGTTGTT	NA	False	NA	NA	False	AATAAA	-18	NA	53352782	53365502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_53353018_53354014_53354259_53357060_53357449_53359101_53359456_53360238_53360370_53360654_53360727_53362325_53362430_53365162
transcript_8162.known	chr11	-	1774	11	FSM	ENSMUSG00000059796.17	ENSMUST00000163666.3	1774	11	0	0	0	0	multi-exon	TRUE	canonical	3	9657	junction_10	1402.57834362292	4103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	False	NA	64	True	AATAAA	-19	NA	69563143	69557761	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559160_69559230_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
transcript_8163.known	chr11	-	1845	10	FSM	ENSMUSG00000059796.17	ENSMUST00000128519.8	1845	10	0	0	0	0	multi-exon	FALSE	canonical	3	9657	junction_9	1461.90417007037	590	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTTGGGCTTCTTGTTTCTT	NA	False	NA	64	True	AATAAA	-19	NA	69563143	69557761	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69558444_69558520_69558601_69558847_69558938_69559021_69559375_69559469_69559580_69559903_69560073_69560958_69561099_69561440_69561574_69561753_69561803_69563104
transcript_8166.known	chr11	-	2313	11	FSM	ENSMUSG00000005204.13	ENSMUST00000005336.9	2313	11	0	0	0	0	multi-exon	FALSE	canonical	3	762	junction_10	82.7371742326265	381	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCAAGTGGTGGTCTTCCTT	8530	False	NA	-5	True	AATAAA	-17	NA	69572672	69563940	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572488
transcript_8167.known	chr11	-	2219	11	FSM	ENSMUSG00000005204.13	ENSMUST00000066760.8	2219	11	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_10	281.644616493907	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAGATATGCAAGTGGTGGTC	8292	False	NA	-11	True	AATAAA	-11	NA	69572910	69563946	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69564463_69564872_69564924_69565027_69565112_69565294_69565433_69567915_69567994_69568798_69568847_69568962_69569111_69569447_69569560_69569647_69569888_69570968_69571677_69572814
transcript_817.known	chr1	+	1592	7	FSM	ENSMUSG00000026096.15	ENSMUST00000151296.8	1592	7	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	65.9858991670864	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTCGTGTTTCAAGTGTTT	NA	False	NA	18	True	AATAAA	-38	NA	53352812	53365333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_53353018_53354014_53354259_53357065_53357449_53359101_53359456_53360238_53360370_53362325_53362430_53365162
transcript_8175.known	chr11	-	6740	29	FSM	ENSMUSG00000005198.16	ENSMUST00000058470.16	6740	29	0	0	0	0	multi-exon	FALSE	canonical	2	202	junction_15	57.5883527056204	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCTGTATGTGTACTGACTG	NA	False	NA	-3	True	AATAAA	-22	NA	69649463	69624822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69626393_69626475_69626626_69626726_69626841_69626964_69627152_69627600_69627805_69628007_69628191_69628273_69628379_69630252_69630354_69630704_69630952_69631082_69631308_69631824_69632031_69632462_69632569_69632666_69632839_69633199_69633384_69633512_69633736_69634079_69634284_69634416_69634512_69634628_69634798_69634876_69635087_69635422_69635634_69635745_69635871_69636394_69636528_69636747_69636969_69637092_69637255_69637523_69637806_69637930_69638105_69638201_69638339_69638806_69638940_69648956
transcript_8176.known	chr11	-	2155	11	FSM	ENSMUSG00000041189.10	ENSMUST00000045971.9	2155	11	0	0	0	0	multi-exon	TRUE	canonical	2	3	junction_10	6.56429737291052	34	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATTTTTGTCTATTTTTAA	3	True	NA	-2	True	ATTAAA	-24	NA	69686769	69674861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69675588_69675875_69676024_69676532_69676706_69677706_69677931_69683524_69683735_69684290_69684439_69684709_69684819_69684975_69685086_69685794_69685840_69686420_69686561_69686647
transcript_8181.known	chr11	+	421	4	FSM	ENSMUSG00000070394.11	ENSMUST00000133967.8	421	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_1	597.808404832927	156	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTTTGGTGTCTTTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	69729339	69730439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69729400_69729745_69729778_69730013_69730095_69730191
transcript_8183.known	chr11	+	492	4	FSM	ENSMUSG00000070394.11	ENSMUST00000094065.5	492	4	0	0	0	0	multi-exon	FALSE	canonical	3	1210	junction_1	145.470119115767	641	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTGGTGTCTTTATTCATC	NA	False	NA	NA	False	ATTAAA	-21	NA	69729349	69730444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69729476_69729745_69729778_69730013_69730095_69730191
transcript_8184.nnic	chr11	+	427	4	NNC	ENSMUSG00000070394.11	novel	421	4	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_1	694.908307300723	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGAACTTTGGTGTCTTTAT	NA	False	NA	NA	False	ATTAAA	-16	NA	69729358	69730439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_69729425_69729745_69729778_69730013_69730095_69730191
transcript_8186.known	chr11	+	387	3	FSM	ENSMUSG00000070394.11	ENSMUST00000156556.2	387	3	0	0	0	0	multi-exon	FALSE	canonical	3	1210	junction_1	148.5	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGACTCTGGGGCCTGTGGGA	NA	False	NA	NA	False	NA	NA	NA	69729380	69730273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69729476_69729745_69729778_69730013
transcript_8187.known	chr11	+	603	3	FSM	ENSMUSG00000070394.11	ENSMUST00000128281.2	603	3	0	0	0	0	multi-exon	FALSE	canonical	3	1507	junction_1	11	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	ATGTTGAAGCAGAAAAGAAA	NA	False	NA	NA	False	NA	NA	NA	69729463	69730399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69729778_69730013_69730095_69730191
transcript_8188.known	chr11	+	953	2	FSM	ENSMUSG00000070394.11	ENSMUST00000139085.2	953	2	0	0	0	0	multi-exon	FALSE	canonical	3	1529	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AAAGAACTTTGGTGTCTTTA	NA	False	NA	NA	False	ATTAAA	-15	NA	69729388	69730438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69730095_69730191
transcript_8192.known	chr11	-	2778	14	FSM	ENSMUSG00000001583.14	ENSMUST00000001626.10	2778	14	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_11	5.7316726185222	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACAAAGACACAGCCTCCTTC	9080	False	NA	-6	True	AAAAAG	-27	NA	69749556	69741830	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69742542_69742623_69742720_69742800_69743112_69743638_69743719_69743942_69744108_69744406_69744502_69745783_69746058_69746345_69746630_69746736_69746893_69747203_69747396_69747518_69747590_69747737_69747952_69749230_69749336_69749532
transcript_8193.known	chr11	+	2785	8	FSM	ENSMUSG00000019461.13	ENSMUST00000108633.9	2785	8	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	4.6246897303539	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCGGTGATTATGTGAGGATT	NA	False	NA	NA	False	NA	NA	NA	69737442	69742884	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69737518_69737733_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
transcript_8195.nnic	chr11	+	1677	8	NNC	ENSMUSG00000019461.13	novel	2785	8	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	5	junction_1	22.8963948681705	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AAACAGTAGAAGCCGGATGT	NA	False	NA	15	True	TATAAA	-15	NA	69737442	69741862	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_69737518_69737819_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
transcript_82.known	SIRV2	-	2051	11	FSM	SIRV2A	SIRV201	2051	11	0	0	0	0	multi-exon	FALSE	canonical	3	240	junction_6	997.649657946115	391	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACATCCCAACGTGGCATGCG	NA	False	NA	NA	False	NA	NA	NA	5907	1000	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV2_-_1662_1741_1854_1973_2065_2674_2803_2881_3011_3105_3375_3665_3826_3966_4095_4338_4480_4687_4801_5788
transcript_8204.known	chr11	+	1927	7	FSM	ENSMUSG00000019461.13	ENSMUST00000019605.4	1927	7	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_4	3.33749739908346	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAAGCCGGATGTGATGGGA	NA	False	NA	22	True	TATAAA	-22	NA	69737501	69741869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69737902_69738160_69738400_69738482_69738526_69738628_69738850_69739039_69739202_69740837_69741000_69741169
transcript_8205.known	chr11	-	2482	22	FSM	ENSMUSG00000001588.13	ENSMUST00000001631.7	2482	22	0	0	0	0	multi-exon	TRUE	canonical	3	20	junction_20	9.40183800238705	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTCTTTCTTAGTTCATTTA	9573	False	NA	-6	True	ATTAAA	-15	NA	69786365	69772392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69772552_69772807_69772858_69773207_69773319_69773410_69773521_69774409_69774583_69775147_69775318_69775411_69775507_69775621_69775692_69776218_69776431_69776518_69776643_69777793_69777895_69777981_69778034_69780062_69780173_69780261_69780337_69780443_69780540_69780645_69780691_69780824_69781009_69781259_69781319_69781414_69781469_69781689_69781810_69785425_69785484_69786111
transcript_8208.known	chr11	-	1640	9	FSM	ENSMUSG00000018570.18	ENSMUST00000102580.10	1640	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	6.57647321898295	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTGCTGGGAGCTGCG	9726	False	NA	-13	True	AATAAA	-15	NA	69791783	69788188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69788319_69788444_69788581_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790637_69791128
transcript_8211.known	chr11	-	1485	8	FSM	ENSMUSG00000018570.18	ENSMUST00000018714.13	1485	8	0	0	0	0	multi-exon	FALSE	canonical	2	12	junction_7	3.28260722659316	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGAGTGCTGGGAGCTGCG	9745	False	NA	-13	True	AATAAA	-15	NA	69791764	69788188	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69788319_69788928_69788977_69789077_69789237_69789672_69789919_69790024_69790114_69790342_69790415_69790531_69790637_69791128
transcript_8216.known	chr11	+	1159	11	FSM	ENSMUSG00000023170.15	ENSMUST00000116358.8	1159	11	0	0	0	0	multi-exon	FALSE	canonical	3	122	junction_1	67.5763272159711	91	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCATGCCTGAGTGCTGTTT	4091	False	NA	11	True	AATAAA	-21	NA	69804875	69807416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69804897_69805098_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
transcript_8221.known	chr11	+	1220	10	FSM	ENSMUSG00000023170.15	ENSMUST00000057884.6	1220	10	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_9	31.9443961352292	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCATGCCTGAGTGCTGTTTA	4233	False	NA	12	True	AATAAA	-22	NA	69805017	69807417	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69805260_69805577_69805688_69805758_69805872_69805964_69806045_69806133_69806217_69806456_69806611_69806690_69806781_69806858_69806939_69807023_69807120_69807245
transcript_823.known	chr1	-	2442	6	FSM	ENSMUSG00000026095.16	ENSMUST00000027264.10	2442	6	0	0	0	0	multi-exon	FALSE	canonical	3	502	junction_1	45.94344349306	427	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGTGTTAATTTTTACCT	NA	False	NA	-2	True	AATAAA	-41	NA	53391911	53383775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_53384139_53385738_53385921_53386173_53387718_53389145_53389222_53390038_53390093_53391688
transcript_8236.known	chr11	-	1373	7	FSM	ENSMUSG00000078812.11	ENSMUST00000070996.11	1373	7	0	0	0	0	multi-exon	FALSE	canonical	3	81	junction_6	9665.3113547021	441	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9941	False	NA	-15	True	AATAAA	-20	NA	69812212	69807545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69810274_69810305_69811988
transcript_8238.known	chr11	-	852	7	FSM	ENSMUSG00000078812.11	ENSMUST00000108607.8	852	7	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	9783.67234080446	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGGAGTTGGGTACTGCTTG	6467	False	NA	NA	False	NA	NA	NA	69812016	69807922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811249_69811988
transcript_8239.known	chr11	-	1353	7	FSM	ENSMUSG00000078812.11	ENSMUST00000108611.8	1353	7	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_6	9790.70116658319	421	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6717	False	NA	-15	True	AATAAA	-20	NA	69811766	69807545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811626
transcript_824.known	chr1	-	983	6	FSM	ENSMUSG00000026095.16	ENSMUST00000123519.9	983	6	0	0	0	0	multi-exon	TRUE	canonical	3	13	junction_2	221.433872747599	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGTGGGGTGTAGTAGTT	NA	False	NA	-30	True	AATAAA	-13	NA	53391911	53383803	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_53384139_53385738_53385921_53387604_53387718_53389145_53389222_53390038_53390093_53391688
transcript_8240.known	chr11	-	1281	7	FSM	ENSMUSG00000078812.11	ENSMUST00000164359.8	1281	7	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_6	9789.73126404511	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCAGTTGTTTATTTGTT	6572	False	NA	-9	True	AATAAA	-26	NA	69811911	69807539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811849
transcript_8241.known	chr11	-	1437	7	FSM	ENSMUSG00000078812.11	ENSMUST00000043419.10	1437	7	0	0	0	0	multi-exon	FALSE	canonical	3	627	junction_6	9644.56352477049	717	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9941	False	NA	-15	True	AATAAA	-20	NA	69812212	69807545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166_69811261_69811988
transcript_8248.known	chr11	-	1259	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108612.8	1259	6	0	0	0	0	multi-exon	FALSE	canonical	3	1359	junction_5	7943.03597876782	424	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	6717	False	NA	-15	True	AATAAA	-20	NA	69811766	69807545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811626
transcript_8249.known	chr11	-	849	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108609.8	849	6	0	0	0	0	multi-exon	FALSE	canonical	3	1864	junction_5	7741.45703081791	24	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATCAGAAAGCTGGATTCTGG	6593	False	NA	NA	False	NA	NA	NA	69811890	69807856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811849
transcript_8250.known	chr11	-	775	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108608.8	775	6	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_5	8383.38681917994	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTACTGCTTGTGGTTTAGGT	6593	False	NA	NA	False	NA	NA	NA	69811890	69807912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811867
transcript_8251.known	chr11	-	1343	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108613.10	1343	6	0	0	0	0	multi-exon	FALSE	canonical	3	20384	junction_3	507.007534460781	8583	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	9941	False	NA	-15	True	AATAAA	-20	NA	69812212	69807545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811988
transcript_8263.known	chr11	-	1409	6	FSM	ENSMUSG00000078812.11	ENSMUST00000108610.8	1409	6	0	0	0	0	multi-exon	FALSE	canonical	3	855	junction_5	8144.23656336185	486	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCCCAACTCAGTTGTTTA	7027	False	NA	-15	True	AATAAA	-20	NA	69811456	69807545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69808168_69808253_69808328_69808422_69808555_69808742_69808848_69809976_69810163_69811166
transcript_8264.nnic	chr11	+	1190	7	NNC	ENSMUSG00000018554.14	novel	679	3	NA	NA	-1054	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_1	33.2097709851918	9	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTTCTTGTTGTCCTGGTCTC	NA	False	NA	11	True	AGTAAA	-14	NA	69829618	69832421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_69829697_69830063_69830154_69830699_69830985_69831153_69831258_69831415_69831594_69831871_69831957_69832051
transcript_8265.known	chr11	-	2524	11	FSM	ENSMUSG00000018566.15	ENSMUST00000018710.13	2524	11	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	3.57910603363466	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GATGAGTGTCCTGTGCTGGA	NA	False	NA	2	True	ATTAAA	-40	NA	69838975	69833368	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69834399_69834884_69835089_69835612_69835715_69835827_69835933_69836094_69836283_69836388_69836552_69836663_69836780_69836894_69837020_69837111_69837285_69837393_69837511_69838774
transcript_8266.known	chr11	-	1776	10	FSM	ENSMUSG00000018566.15	ENSMUST00000141837.9	1776	10	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	3.19722101554181	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAATGCTATAAGTGGTT	NA	False	NA	NA	False	AATAAA	-24	NA	69838990	69834617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69835089_69835612_69835715_69835827_69835933_69836094_69836283_69836388_69836552_69836663_69836780_69836894_69837020_69837111_69837285_69837393_69837511_69838774
transcript_8268.nic	chr11	+	908	5	NIC	ENSMUSG00000018569.13	novel	1335	4	NA	NA	-94	0	combination_of_known_junctions	TRUE	canonical	1	6	junction_1	48.7493589701444	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTAGGTCTTTCCAGGCCGCT	8649	False	NA	6	True	AATAAA	-16	NA	69856127	69858708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_69856193_69856710_69856976_69857768_69857934_69858045_69858131_69858380
transcript_8269.known	chr11	+	1335	4	FSM	ENSMUSG00000018569.13	ENSMUST00000018713.13	1335	4	0	0	0	0	multi-exon	FALSE	canonical	3	113	junction_1	5.71547606649408	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTCTTTCCAGGCCGCTTTT	8743	False	NA	9	True	AATAAA	-19	NA	69856221	69858711	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69856976_69857768_69857934_69858045_69858131_69858380
transcript_8270.known	chr11	-	1259	7	FSM	ENSMUSG00000018565.18	ENSMUST00000123701.9	1259	7	0	0	0	0	multi-exon	FALSE	canonical	3	523	junction_1	38.6393581727233	52	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAACCTCTGGTAATGCTTA	9889	False	NA	-4	True	AATAAA	-26	NA	69871089	69859053	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69865865_69866087_69870655_69870737_69870824
transcript_8271.known	chr11	-	899	7	FSM	ENSMUSG00000018565.18	ENSMUST00000142788.8	899	7	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_4	199.487468278085	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TCTGGTAATGCTTAAACAAG	9880	False	NA	2	True	AATAAA	-32	NA	69871098	69859047	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69859367_69859921_69860023_69860318_69860415_69861386_69861569_69870655_69870737_69870824_69870886_69871039
transcript_8274.known	chr11	+	1351	4	FSM	ENSMUSG00000018567.15	ENSMUST00000018711.15	1351	4	0	0	0	0	multi-exon	FALSE	canonical	3	795	junction_2	75.6350888587213	775	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGCCCTGTGTCATTCCAC	4728	False	NA	16	True	AATAAA	-26	NA	69881968	69885777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69882629_69883190_69883270_69883407_69883527_69885284
transcript_8276.known	chr11	+	932	3	FSM	ENSMUSG00000018567.15	ENSMUST00000144443.2	932	3	0	0	0	0	multi-exon	FALSE	canonical	3	916	junction_1	30.5	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCGAGCTGAATTGAATTTG	5269	False	NA	0	True	AATAAA	-10	NA	69882509	69885761	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69882629_69883190_69883527_69885284
transcript_8277.known	chr11	+	750	4	FSM	ENSMUSG00000018567.15	ENSMUST00000108592.2	750	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	446.878805345103	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTGAATTGAATTTGCCCTG	5224	False	NA	5	True	AATAAA	-15	NA	69882464	69885766	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69882629_69883190_69883270_69883501_69883527_69885284
transcript_8279.known	chr11	+	2006	5	FSM	ENSMUSG00000018572.11	ENSMUST00000018716.10	2006	5	0	0	0	0	multi-exon	FALSE	canonical	3	427	junction_3	63.9193828192982	88	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCTTGTCCTATTTGG	2317	False	NA	16	True	AATAAA	-26	NA	69886602	69890835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889126_69889959_69890063
transcript_828.known	chr1	+	1910	4	FSM	ENSMUSG00000026097.10	ENSMUST00000027266.4	1910	4	0	0	0	0	multi-exon	FALSE	canonical	3	184	junction_2	12.7104506432917	145	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATGTTCCTCTGTTTAA	NA	False	NA	93	True	TATAAA	-8	NA	53336253	53349468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_53336348_53338130_53338312_53344613_53344766_53347985
transcript_8281.known	chr11	+	1706	5	FSM	ENSMUSG00000018572.11	ENSMUST00000101526.9	1706	5	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_3	201.26273251648	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCCTCCTTGTCCTATTTGG	2416	False	NA	16	True	AATAAA	-26	NA	69886701	69890835	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69886880_69888422_69888455_69888571_69888665_69889327_69889959_69890063
transcript_8284.known	chr11	+	1797	5	FSM	ENSMUSG00000018572.11	ENSMUST00000153684.8	1797	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	234.354832465644	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGCCCTCCTTGTCCTATTTG	3531	False	NA	15	True	AATAAA	-25	NA	69887816	69890834	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69887886_69888422_69888455_69888571_69888665_69889126_69889959_69890063
transcript_8285.known	chr11	-	2168	20	FSM	ENSMUSG00000018574.15	ENSMUST00000102574.10	2168	20	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_10	16.9960073525513	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCCGTGAATGTCACTGCTC	NA	False	NA	4	True	AATAAA	-21	NA	69906234	69901008	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783_69903910_69903997_69904128_69904259_69904405_69905070_69905206_69905304_69905370_69905456_69905530_69905618_69905685_69905942_69906022_69906088
transcript_8286.known	chr11	-	2020	19	FSM	ENSMUSG00000018574.15	ENSMUST00000018718.8	2020	19	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_17	40.1080331229001	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTATGGGGGTGATGGAGT	NA	False	NA	-57	True	NA	NA	NA	69906213	69901069	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_69901263_69901350_69901427_69901523_69901597_69901674_69901748_69901831_69901905_69901993_69902092_69902170_69902273_69902361_69902425_69902509_69902597_69903011_69903117_69903273_69903473_69903783_69903910_69903997_69904128_69904259_69904405_69905070_69905206_69905304_69905370_69905456_69905530_69905942_69906022_69906088
transcript_8289.known	chr11	+	2968	15	FSM	ENSMUSG00000020888.17	ENSMUST00000019362.15	2968	15	0	0	0	0	multi-exon	FALSE	canonical	3	488	junction_4	30.5160546571265	67	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCCCAAGCCTCTGGCTCC	7135	False	NA	12	True	AATAAA	-16	NA	69891420	69900937	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69891853_69895630_69895701_69895980_69896127_69896262_69896373_69896487_69896624_69896763_69896855_69896961_69897032_69897116_69897257_69897339_69897417_69898278_69898347_69898640_69898770_69898845_69898978_69899106_69899287_69899602_69899822_69899969
transcript_8291.known	chr11	+	672	5	FSM	ENSMUSG00000040963.16	ENSMUST00000179757.2	672	5	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_2	4.49305018890286	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAGACGGAACATCACCC	6990	False	NA	NA	False	NA	NA	NA	69988517	69996682	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_69988718_69988878_69988966_69989053_69989200_69996201_69996309_69996550
transcript_8293.known	chr11	+	558	2	FSM	ENSMUSG00000040938.17	ENSMUST00000149880.2	558	2	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCTCTTGAGAGTTCCATTA	NA	False	NA	NA	False	AATAAA	-15	NA	70105643	70107239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70105925_70106962
transcript_8294.known	chr11	-	2531	4	FSM	ENSMUSG00000044367.8	ENSMUST00000060010.3	2531	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	1.24721912892465	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGTCTGATGGTCAAGCTCAG	NA	False	NA	NA	False	NA	NA	NA	70111820	70107614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70108748_70109418_70110157_70111020_70111165_70111304
transcript_8297.known	chr11	-	1621	8	FSM	ENSMUSG00000040904.11	ENSMUST00000176268.2	1621	8	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	213.450371806867	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GACATTTTTATACAGAAAAT	NA	False	NA	-56	True	NA	NA	NA	70130629	70126075	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70126295_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609_70129297_70129763_70129841_70130481
transcript_830.known	chr1	-	300	4	FSM	ENSMUSG00000117809.2	ENSMUST00000236737.2	300	4	0	0	0	0	multi-exon	FALSE	canonical	3	541	junction_1	43.3999487966928	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCACATAACCATGTGTGG	NA	False	NA	NA	False	NA	NA	NA	53391778	53387637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_53387718_53389145_53389222_53390038_53390093_53391688
transcript_8304.known	chr11	-	779	3	FSM	ENSMUSG00000093989.2	ENSMUST00000125752.3	779	3	0	0	0	0	multi-exon	FALSE	canonical	1	8	junction_2	359	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCTGTCTGTGCTTTCA	NA	False	NA	-1	True	AATAAA	-20	NA	70130606	70128949	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70129297_70129763_70129841_70130251
transcript_8305.known	chr11	-	611	3	FSM	ENSMUSG00000093989.2	ENSMUST00000040428.4	611	3	0	0	0	0	multi-exon	FALSE	canonical	3	718	junction_2	4	517	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTTGCTGTCTGTGCTTTCA	NA	False	NA	-1	True	AATAAA	-20	NA	70130668	70128949	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70129297_70129763_70129841_70130481
transcript_8306.known	chr11	-	779	5	FSM	ENSMUSG00000020831.19	ENSMUST00000021181.13	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	264	junction_1	106.829303096107	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70126295_70126849_70127038_70127702_70127805_70128356_70128452_70128609
transcript_8307.known	chr11	-	778	5	FSM	ENSMUSG00000020831.19	ENSMUST00000102569.10	778	5	0	0	0	0	multi-exon	FALSE	canonical	3	142	junction_3	164.364495862093	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70126291_70126521_70126627_70126849_70127038_70128356_70128452_70128609
transcript_8308.known	chr11	-	880	6	FSM	ENSMUSG00000020831.19	ENSMUST00000108578.9	880	6	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_1	133.830340356737	110	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128740	70126031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70126291_70126521_70126627_70126849_70127038_70127702_70127805_70128356_70128452_70128609
transcript_8309.known	chr11	-	643	4	FSM	ENSMUSG00000020831.19	ENSMUST00000108575.9	643	4	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_1	223.35671519393	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGTGCTGCCAGCTGCCG	NA	False	NA	-12	True	ATTAAA	-15	NA	70128679	70126031	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70126295_70126822_70127038_70128356_70128452_70128609
transcript_8310.known	chr11	-	659	4	FSM	ENSMUSG00000020831.19	ENSMUST00000108577.8	659	4	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	221.278607692254	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACATGGTGCTGCCAGCTGC	NA	False	NA	-14	True	ATTAAA	-13	NA	70128728	70126033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70126291_70126849_70127038_70128356_70128452_70128609
transcript_8311.known	chr11	-	3001	14	FSM	ENSMUSG00000000320.11	ENSMUST00000000329.9	3001	14	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_6	3.422860840198	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATAAAGACCAGTTCACCAAG	7402	False	NA	NA	False	AATAAA	-18	NA	70146179	70132282	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70133391_70133510_70133682_70133802_70133904_70136686_70136809_70137720_70137891_70138085_70138173_70140872_70141083_70142275_70142420_70143223_70143385_70143620_70143725_70143836_70143960_70144072_70144155_70145234_70145437_70145963
transcript_8313.known	chr11	-	2314	8	FSM	ENSMUSG00000000320.11	ENSMUST00000108574.3	2314	8	0	0	0	0	multi-exon	FALSE	canonical	3	24	junction_3	2.55550625999976	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTCAGCCTCCTCTTGTTTC	7414	False	NA	NA	False	NA	NA	NA	70146167	70139788	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70141083_70142275_70142420_70143223_70143385_70143620_70143725_70143836_70143960_70144072_70144155_70145234_70145437_70145963
transcript_8318.known	chr11	-	3435	17	FSM	ENSMUSG00000018921.12	ENSMUST00000019065.10	3435	17	0	0	0	0	multi-exon	FALSE	canonical	3	551	junction_9	48.6591701917532	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACCCTGTGCTGCTTTGGCT	NA	False	NA	-27	True	AATAAA	-13	NA	70300854	70283708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70283849_70284587_70286019_70286127_70286335_70286485_70286542_70287111_70287272_70287381_70287530_70287643_70287761_70287840_70287930_70288275_70288364_70288468_70288599_70288891_70289043_70289306_70289367_70292475_70292548_70292742_70292893_70296452_70296559_70297082_70297148_70300589
transcript_8320.known	chr11	-	562	4	FSM	ENSMUSG00000018921.12	ENSMUST00000135148.2	562	4	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_1	310.061284264901	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCACTCAGATCTTTTAAGTG	NA	False	NA	NA	False	NA	NA	NA	70300857	70293456	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70293580_70296452_70296559_70297082_70297148_70300589
transcript_8321.known	chr11	+	1777	15	FSM	ENSMUSG00000060216.16	ENSMUST00000108568.10	1777	15	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_13	60.0347263452324	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGAATGTGTATGTGTTCTG	NA	False	NA	14	True	AATAAA	-14	NA	70323462	70331500	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330643_70330732_70330989
transcript_8323.known	chr11	+	1848	15	FSM	ENSMUSG00000060216.16	ENSMUST00000102564.11	1848	15	0	0	0	0	multi-exon	FALSE	canonical	3	204	junction_13	22.0579015413562	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTGCTATGCCAGTGTTC	NA	False	NA	8	True	AATAAA	-14	NA	70323478	70331620	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70323580_70326367_70326399_70326988_70327050_70327156_70327202_70327386_70327584_70327694_70327755_70328135_70328204_70328396_70328536_70328769_70328855_70329144_70329218_70329473_70329612_70330297_70330382_70330487_70330568_70330676_70330732_70330989
transcript_8328.known	chr11	+	902	3	FSM	ENSMUSG00000018923.14	ENSMUST00000019067.8	902	3	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_2	11	102	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTAAGAGTCTCTCTCTCGC	NA	False	NA	NA	False	AATAAA	-20	NA	70342744	70344553	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70342890_70343033_70343165_70343927
transcript_8332.known	chr11	-	2699	5	FSM	ENSMUSG00000018920.12	ENSMUST00000019064.9	2699	5	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_4	7.17635004720366	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTAGTGACTTCTGCAGACTC	7600	False	NA	NA	False	NA	NA	NA	70350810	70344808	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70346271_70346480_70346889_70349570_70349654_70349854_70349994_70350203
transcript_8333.known	chr11	+	1000	5	FSM	ENSMUSG00000018919.11	ENSMUST00000019063.3	1000	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	5.95818764390649	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAATGTGCCAGTGATGAA	NA	False	NA	NA	False	AATAAA	-20	NA	70396069	70402004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70396331_70400619_70400701_70401040_70401178_70401394_70401579_70401667
transcript_8334.nnic	chr11	+	744	4	NNC	ENSMUSG00000018919.11	novel	478	4	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	2	5	junction_3	4.96655480858378	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GCTAATGTGCCAGTGATGAA	NA	False	NA	NA	False	AATAAA	-20	NA	70400786	70402004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_70400873_70401040_70401178_70401394_70401579_70401667
transcript_8335.known	chr11	+	478	4	FSM	ENSMUSG00000018919.11	ENSMUST00000179986.8	478	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	5.71547606649408	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTCTGGAAGTCTGAGTGG	NA	False	NA	NA	False	NA	NA	NA	70400795	70401708	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70400912_70401040_70401178_70401394_70401579_70401667
transcript_8337.known	chr11	+	798	6	FSM	ENSMUSG00000018286.7	ENSMUST00000018430.7	798	6	0	0	0	0	multi-exon	FALSE	canonical	3	5742	junction_5	304.149305440601	4414	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGACGTTTCTGTGTGAAGG	NA	False	NA	23	True	AATAAA	-13	NA	70416211	70418475	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70416322_70416710_70416779_70417119_70417252_70417369_70417500_70418004_70418150_70418262
transcript_835.known	chr1	-	3293	8	FSM	ENSMUSG00000026094.15	ENSMUST00000027263.14	3293	8	0	0	0	0	multi-exon	TRUE	canonical	3	57	junction_1	6.25316246521123	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTGCCTTAAGTTACTCTTG	686	False	NA	NA	False	AATAAA	-26	NA	53824383	53794664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_53796930_53800140_53800321_53801747_53801797_53803190_53803318_53805079_53805225_53810768_53810982_53815675_53815839_53824232
transcript_8352.nnic	chr11	+	1766	10	NNC	ENSMUSG00000040746.16	novel	1833	9	NA	NA	-24	0	at_least_one_novel_splicesite	FALSE	canonical	3	43	junction_1	154.113954952532	123	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9166	False	NA	30	True	AATAAA	-31	NA	70538088	70542247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_70538140_70538230_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
transcript_8356.known	chr11	+	1833	9	FSM	ENSMUSG00000040746.16	ENSMUST00000037534.8	1833	9	0	0	0	0	multi-exon	FALSE	canonical	3	485	junction_5	18.8244355825082	286	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGTTAAGATCATCTTTACAC	9190	False	NA	30	True	AATAAA	-31	NA	70538112	70542247	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70538779_70538854_70538936_70540046_70540173_70540270_70540359_70540500_70540592_70540737_70540844_70540951_70541046_70541589_70541671_70541747
transcript_8369.known	chr11	-	1711	8	FSM	ENSMUSG00000014606.15	ENSMUST00000014750.15	1711	8	0	0	0	0	multi-exon	FALSE	canonical	3	687	junction_5	58.5020495018625	427	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGCTGTGTAAAGTCGTAACT	NA	False	NA	0	True	ATTAAA	-28	NA	70537884	70535021	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70535748_70535864_70535917_70535995_70536096_70536175_70536267_70536355_70536447_70536609_70536817_70536901_70537055_70537593
transcript_838.nnic	chr1	-	4291	19	NNC	ENSMUSG00000041303.8	novel	4582	18	NA	NA	-55	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	45.5715419104814	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCACCTTTTAAACTTT	6645	False	NA	-6	True	AATAAA	-19	NA	54478185	54435162	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_54435792_54436137_54437162_54438287_54438441_54442669_54442795_54444138_54444330_54444995_54445234_54455042_54455179_54455880_54455983_54456817_54457021_54458541_54458714_54459554_54459659_54462659_54462733_54463167_54463316_54466558_54466725_54467920_54468113_54469657_54469782_54473212_54473398_54476990_54477103_54477971
transcript_839.known	chr1	-	4582	18	FSM	ENSMUSG00000041303.8	ENSMUST00000041638.8	4582	18	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_11	22.8358062796764	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CATTTCACCTTTTAAACTTT	6700	False	NA	-6	True	AATAAA	-19	NA	54478130	54435162	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_54437162_54438287_54438441_54442669_54442795_54444138_54444330_54444995_54445234_54455042_54455179_54455880_54455983_54456817_54457021_54458541_54458714_54459554_54459659_54462659_54462733_54463167_54463316_54466558_54466725_54467920_54468113_54469657_54469782_54473212_54473398_54476990_54477103_54477971
transcript_8396.known	chr11	-	724	3	FSM	ENSMUSG00000018293.5	ENSMUST00000178254.2	724	3	0	0	0	0	multi-exon	FALSE	canonical	3	1190	junction_2	4423	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGGAAAATTTTTGTTTTT	NA	False	NA	NA	False	NA	NA	NA	70545447	70542764	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70543048_70543612_70543781_70545174
transcript_8399.known	chr11	-	861	3	FSM	ENSMUSG00000018293.5	ENSMUST00000018437.3	861	3	0	0	0	0	multi-exon	FALSE	canonical	3	9692	junction_2	172	2289	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CAAGGACCTGTGTTGGTTTG	NA	False	NA	NA	False	AATAAA	-16	NA	70545470	70542675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70543048_70543612_70543806_70545174
transcript_840.known	chr1	-	6195	25	FSM	ENSMUSG00000025982.14	ENSMUST00000027127.14	6195	25	0	0	0	0	multi-exon	TRUE	canonical	2	1032	junction_2	157.733865172392	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTCATAGTATACCAGTTCTT	NA	False	NA	-9	True	AATAAA	-17	NA	55066640	55024327	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_55026652_55027097_55027315_55029461_55029735_55033488_55033621_55034524_55034646_55035975_55036088_55036170_55036354_55037196_55037419_55038785_55038912_55039173_55039321_55039400_55039547_55039802_55040074_55040170_55040258_55040541_55040722_55042262_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55055534_55055650_55055937_55056043_55058392_55058560_55066497
transcript_8400.known	chr11	-	608	2	FSM	ENSMUSG00000018293.5	ENSMUST00000108549.2	608	2	0	0	0	0	multi-exon	FALSE	canonical	3	9692	junction_1	0	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATTACCTCTTAAGTCCCTT	NA	False	NA	NA	False	ACTAAA	-6	NA	70545424	70543447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70543806_70545174
transcript_8401.nnic	chr11	+	1671	12	NNC	ENSMUSG00000060600.16	novel	1461	11	NA	NA	-1418	0	at_least_one_novel_splicesite	FALSE	canonical	2	15	junction_1	16.078320705043	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGACCATGCTGTGTTCCTTA	5695	False	NA	10	True	AATAAA	-13	NA	70546609	70553336	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_70546896_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
transcript_8402.known	chr11	+	1454	12	FSM	ENSMUSG00000060600.16	ENSMUST00000072841.12	1454	12	0	0	0	0	multi-exon	FALSE	canonical	2	23	junction_1	14.3486688414174	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGTGTTCCTTAGGA	7113	False	NA	13	True	AATAAA	-16	NA	70548027	70553339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70548094_70548697_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
transcript_8403.known	chr11	+	1564	12	FSM	ENSMUSG00000060600.16	ENSMUST00000108548.8	1564	12	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	19.1466718079752	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGCTGTGTTCCTTAGGA	7115	False	NA	13	True	AATAAA	-16	NA	70548029	70553339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70548094_70548585_70548785_70548990_70549087_70549214_70549274_70549420_70549491_70549853_70549988_70551485_70551709_70551822_70552021_70552214_70552417_70552787_70552897_70553039_70553099_70553188
transcript_8406.known	chr11	-	1159	7	FSM	ENSMUSG00000018287.13	ENSMUST00000018431.13	1159	7	0	0	0	0	multi-exon	FALSE	canonical	3	730	junction_3	39.5179284207392	678	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAATGTGGATACTAGTCC	NA	False	NA	-9	True	AATAAA	-33	NA	70560242	70554596	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70555047_70555145_70555303_70555403_70555494_70555608_70555694_70555813_70555903_70556122_70556191_70560022
transcript_8407.known	chr11	-	830	6	FSM	ENSMUSG00000018287.13	ENSMUST00000137691.8	830	6	0	0	0	0	multi-exon	FALSE	canonical	3	730	junction_2	42.8186875090772	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAGCTGTCACTCAGGCTG	NA	False	NA	NA	False	NA	NA	NA	70560044	70554828	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70555047_70555145_70555494_70555608_70555694_70555813_70555903_70556122_70556191_70560022
transcript_8409.known	chr11	-	772	5	FSM	ENSMUSG00000018287.13	ENSMUST00000124691.2	772	5	0	0	0	0	multi-exon	FALSE	canonical	3	730	junction_2	45.9313346202786	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CAACAAGACCTATGGCTGTG	NA	False	NA	NA	False	NA	NA	NA	70560105	70555165	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70555303_70555403_70555494_70555608_70555694_70555813_70556191_70560022
transcript_8410.known	chr11	-	1150	7	FSM	ENSMUSG00000057054.12	ENSMUST00000108541.9	1150	7	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	4.41273409829124	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTGTGCGAGGTAGTGATGG	NA	False	NA	NA	False	ATTAAA	-21	NA	70590981	70579186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70579576_70579810_70579971_70580571_70580766_70581008_70581049_70581264_70581379_70586689_70586775_70590813
transcript_8411.known	chr11	+	2061	2	FSM	ENSMUSG00000043602.6	ENSMUST00000060444.6	2061	2	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	0	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TCCTCCTCTGGCCTTTCCTT	922	False	NA	18	True	ATTAAA	-26	NA	70655034	70663754	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70655376_70662034
transcript_8412.known	chr11	-	2389	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108530.2	2389	17	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_6	121.230008016786	149	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTGAATAAATTTTTATTC	NA	False	NA	-29	True	AATAAA	-19	NA	70860780	70833927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835797_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
transcript_8414.known	chr11	-	2453	17	FSM	ENSMUSG00000040667.12	ENSMUST00000108531.8	2453	17	0	0	0	0	multi-exon	FALSE	canonical	3	352	junction_6	132.716744893024	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTTTGCTTTACAATTAAAGT	NA	False	NA	1	True	AATAAA	-31	NA	70860799	70833897	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835389_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
transcript_8416.known	chr11	-	2450	17	FSM	ENSMUSG00000040667.12	ENSMUST00000035283.11	2450	17	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_4	230.176562664403	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAAATTTGACTTTGCTTTA	NA	False	NA	-9	True	AATAAA	-39	NA	70860788	70833907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70834149_70834704_70834824_70834937_70835065_70835307_70835407_70835498_70835565_70835670_70835812_70836028_70836188_70838527_70838630_70840971_70841063_70842085_70842185_70845326_70845475_70846961_70847149_70849091_70849266_70852407_70852495_70856532_70856659_70858673_70858844_70860474
transcript_8424.known	chr11	+	1100	7	FSM	ENSMUSG00000018449.13	ENSMUST00000018593.10	1100	7	0	0	0	0	multi-exon	FALSE	canonical	3	224	junction_4	48.3922055248111	195	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCAACTTTCCTGGAGATT	NA	False	NA	45	True	NA	NA	NA	70861038	70868659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70864959_70865725_70865867_70868483
transcript_8426.known	chr11	+	566	7	FSM	ENSMUSG00000018449.13	ENSMUST00000178822.8	566	7	0	0	0	0	multi-exon	FALSE	canonical	3	5	junction_5	117.134419459962	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCCCGACCTCACACTTC	NA	False	NA	NA	False	NA	NA	NA	70861332	70868513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70864959_70865819_70865867_70868483
transcript_8427.known	chr11	+	519	6	FSM	ENSMUSG00000018449.13	ENSMUST00000167509.2	519	6	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_5	118.829962551538	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCCCGACCTCACACTTC	NA	False	NA	NA	False	NA	NA	NA	70861332	70868513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70864959_70868483
transcript_8428.nic	chr11	+	1902	6	NIC	ENSMUSG00000018449.13	novel	1100	7	NA	NA	-67	0	intron_retention	FALSE	canonical	3	224	junction_4	52.6748516846512	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTCTTGGTGTTCTGATG	NA	False	NA	13	True	ATTAAA	-14	NA	70860971	70868627	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_70861414_70862589_70862761_70863840_70863902_70864627_70864740_70864894_70865867_70868483
transcript_8431.known	chr11	+	548	6	FSM	ENSMUSG00000018449.13	ENSMUST00000171254.8	548	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_3	115.373480488369	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCCCGACCTCACACTTC	NA	False	NA	NA	False	NA	NA	NA	70861332	70868513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70864894_70864959_70865725_70865867_70868483
transcript_8436.known	chr11	+	343	4	FSM	ENSMUSG00000018449.13	ENSMUST00000169965.8	343	4	0	0	0	0	multi-exon	FALSE	canonical	3	26	junction_3	151.702193641211	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATCCCGACCTCACACTTC	NA	False	NA	NA	False	NA	NA	NA	70861332	70868513	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70861414_70862589_70862761_70863840_70863902_70868483
transcript_8438.known	chr11	-	1175	6	FSM	ENSMUSG00000018446.9	ENSMUST00000078528.7	1175	6	0	0	0	0	multi-exon	FALSE	canonical	3	4814	junction_4	225.05234946563	96	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTCTTTCGCCCACATCAG	NA	False	NA	-26	True	AATAAA	-32	NA	70873852	70868661	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70869071_70869253_70869377_70869514_70869611_70870835_70870930_70872995_70873147_70873550
transcript_8439.known	chr11	-	5184	12	FSM	ENSMUSG00000040620.16	ENSMUST00000108527.8	5184	12	0	0	0	0	multi-exon	FALSE	canonical	3	85	junction_7	13.0123907891512	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCTTGGTATCCAGCATTTA	NA	False	NA	2	True	ATTAAA	-30	NA	70895263	70874916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70878254_70879892_70879980_70882933_70883138_70883484_70883613_70884435_70884525_70884682_70884843_70885964_70886077_70886713_70886900_70890195_70890367_70890546_70890775_70892344_70892506_70894942
transcript_8440.known	chr11	-	3666	7	FSM	ENSMUSG00000018442.14	ENSMUST00000143850.8	3666	7	0	0	0	0	multi-exon	FALSE	canonical	3	526	junction_4	25.493463214453	107	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTATTATCTTGTATTTTTAA	NA	False	NA	-3	True	NA	NA	NA	70910129	70898267	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70901253_70903935_70904027_70904268_70904465_70905375_70905470_70906552_70906627_70909137_70909204_70909969
transcript_8442.known	chr11	+	1416	4	FSM	ENSMUSG00000040599.14	ENSMUST00000164220.8	1416	4	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_1	46.3057471835	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTTTCTGCTCATTTTTGC	NA	False	NA	NA	False	AATAGA	-17	NA	70910436	70916892	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70910550_70910831_70911016_70915375_70915538_70915935
transcript_8443.known	chr11	+	3003	3	FSM	ENSMUSG00000040599.14	ENSMUST00000048807.12	3003	3	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_1	24	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATGTATTATTGCTTAAT	NA	False	NA	16	True	AATAAA	-37	NA	70910436	70918197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70911016_70915375_70915538_70915935
transcript_8444.known	chr11	+	344	3	FSM	ENSMUSG00000040599.14	ENSMUST00000133413.8	344	3	0	0	0	0	multi-exon	FALSE	canonical	3	36	junction_1	44	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTGGCTTCACACCACAGAC	NA	False	NA	NA	False	AATAAA	-42	NA	70910436	70916004	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_70910550_70915375_70915538_70915935
transcript_8446.known	chr11	-	1494	2	FSM	ENSMUSG00000018451.8	ENSMUST00000156068.3	1494	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCGTTTGTCCACCAGCTTC	NA	False	NA	1	True	AATAAA	-24	NA	70924339	70922766	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_70923236_70923314
transcript_8447.known	chr11	+	2866	9	FSM	ENSMUSG00000020811.17	ENSMUST00000108511.8	2866	9	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_4	2.29128784747792	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGTCTCTGCCTCTCT	NA	False	NA	19	True	CATAAA	-32	NA	71641805	71680473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_71642056_71650403_71651093_71657614_71657730_71659454_71659640_71662678_71662801_71674083_71674244_71675094_71675260_71678543_71678745_71679494
transcript_8448.known	chr11	+	2956	9	FSM	ENSMUSG00000020811.17	ENSMUST00000108510.2	2956	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	3.30718913883074	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CACTGTGTCTCTGCCTCTCT	NA	False	NA	19	True	CATAAA	-32	NA	71642201	71680473	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_71642542_71650403_71651093_71657614_71657730_71659454_71659640_71662678_71662801_71674083_71674244_71675094_71675260_71678543_71678745_71679494
transcript_8450.known	chr11	+	1513	6	FSM	ENSMUSG00000020808.4	ENSMUST00000021164.4	1513	6	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_3	92.1316449435263	211	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGCATGTTTTTAGATATCT	NA	False	NA	14	True	AATAAA	-18	NA	71933280	71938196	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_71933361_71933842_71934164_71935806_71936085_71936504_71936601_71937165_71937220_71937512
transcript_8451.nnic	chr11	+	1122	6	NNC	ENSMUSG00000020808.4	novel	1513	6	NA	NA	-17	-4	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_3	106.202448182704	36	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGCTTGGCATGTTTTTAGAT	NA	False	NA	10	True	AATAAA	-14	NA	71933263	71938192	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_71933361_71933842_71934164_71935806_71936085_71936504_71936601_71937165_71937220_71937916
transcript_8456.known	chr11	+	681	2	FSM	ENSMUSG00000020808.4	ENSMUST00000127369.2	681	2	0	0	0	0	multi-exon	FALSE	canonical	3	219	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAGATCACTCAGGAAAGGG	NA	False	NA	NA	False	GATAAA	-26	NA	71933327	71934490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_71933361_71933842
transcript_8459.known	chr11	+	981	4	FSM	ENSMUSG00000020803.4	ENSMUST00000021158.4	981	4	0	0	0	0	multi-exon	FALSE	canonical	3	1302	junction_3	85.4959388249264	1200	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCTTAACTCAGGCAGTTTTC	NA	False	NA	NA	False	ATTAAA	-29	NA	72098372	72100841	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_72098595_72099078_72099161_72099555_72099632_72100240
transcript_8463.known	chr11	-	1161	4	FSM	ENSMUSG00000020801.9	ENSMUST00000021157.9	1161	4	0	0	0	0	multi-exon	FALSE	canonical	3	203	junction_2	14.0079342596338	192	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGGATTGCTCCACTTTGA	NA	False	NA	-5	True	AATAAA	-15	NA	72106418	72102549	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_72102904_72104602_72104700_72104963_72105042_72105786
transcript_8465.known	chr11	+	1427	2	FSM	ENSMUSG00000053574.6	ENSMUST00000124762.2	1427	2	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AAAGAAGTCACTTCTTATTC	NA	False	NA	NA	False	AATAAA	-14	NA	72105997	72109270	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_72106828_72108673
transcript_8466.nic	chr11	-	987	4	ISM	ENSMUSG00000020805.15	ENSMUST00000137701.3	1746	11	-22	16446	-22	257	5prime_fragment	FALSE	canonical	3	49	junction_1	1.4142135623731	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTCATTCTTGCTAGACTTAT	NA	False	NA	NA	False	ATTAAA	-17	NA	72157461	72150659	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_72151209_72152438_72152576_72152848_72152978_72157289
transcript_8472.nnic	chr11	+	2117	5	NNC	ENSMUSG00000040483.16	novel	2597	6	NA	NA	-57	-5	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	4.65698400254929	11	NA	NA	TRUE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTTTTAGAGCTGTGTCTT	NA	False	NA	3	True	NA	NA	NA	72192397	72204554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_72192536_72194152_72194289_72199432_72199751_72202781_72202812_72203059
transcript_8473.known	chr11	-	1397	8	FSM	ENSMUSG00000020799.17	ENSMUST00000108503.9	1397	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_6	18.5681315754731	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72252699	72235547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72248310_72248477_72250504_72250712_72252618
transcript_8475.nnic	chr11	-	1007	6	NNC	ENSMUSG00000020799.17	novel	1403	8	NA	NA	4484	0	at_least_one_novel_splicesite	FALSE	canonical	3	29	junction_5	10.6320270880016	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72247638	72235547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72247574
transcript_8476.nic	chr11	-	1164	6	ISM	ENSMUSG00000020799.17	ENSMUST00000108502.8	1403	8	3591	0	3591	0	3prime_fragment	FALSE	canonical	3	33	junction_5	9.09065454189081	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72248531	72235547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_72235798_72236411_72236609_72242653_72242877_72245524_72245669_72246035_72246165_72248310
transcript_8477.nnic	chr11	-	863	5	NNC	ENSMUSG00000020799.17	novel	1403	8	NA	NA	4484	0	at_least_one_novel_splicesite	FALSE	canonical	3	12	junction_3	17.8518206354422	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72247638	72235547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_72235798_72236411_72236609_72242653_72242877_72246035_72246165_72247574
transcript_8479.nnic	chr11	-	509	3	NNC	ENSMUSG00000020799.17	novel	1403	8	NA	NA	15309	0	at_least_one_novel_splicesite	FALSE	canonical	0	0	junction_2	26	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GAGTTAGCACAGAGCTCTCA	NA	False	NA	-1	True	ATTAAA	-17	NA	72236813	72235547	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_72235798_72236411_72236609_72236751
transcript_8480.known	chr11	+	4358	26	FSM	ENSMUSG00000040463.17	ENSMUST00000045633.6	4358	26	0	0	0	0	multi-exon	FALSE	canonical	3	2354	junction_12	204.057066527969	73	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCAACACTTGGACCTGGTTC	NA	False	NA	19	True	AATAAA	-32	NA	72332180	72342594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_72332402_72332503_72332600_72333225_72333310_72333395_72333471_72333571_72333680_72334301_72334478_72334566_72334735_72334828_72334947_72335507_72335804_72336001_72336113_72336433_72336560_72336719_72336888_72336983_72337084_72337797_72337895_72337974_72338127_72338378_72338466_72338555_72338709_72338781_72338953_72339042_72339204_72339557_72339790_72339868_72340001_72340086_72340156_72340545_72340660_72340818_72340921_72341451_72341601_72341702
transcript_8487.known	chr11	-	3241	13	FSM	ENSMUSG00000040447.16	ENSMUST00000045303.10	3241	13	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	1.44096803881588	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTGGTGGCTCTCCAGTGGAA	NA	False	NA	-1	True	AATAAA	-19	NA	72380730	72342463	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_72343942_72344379_72344427_72344879_72345044_72345125_72345225_72347128_72347195_72347325_72347516_72347600_72347754_72348030_72348174_72349458_72349526_72349727_72349880_72354468_72354606_72365530_72365597_72380251
transcript_8488.known	chr11	-	2080	12	FSM	ENSMUSG00000020798.15	ENSMUST00000092940.13	2080	12	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_10	5.71210111723818	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GATTTCAGAGCTTCTTAGAC	NA	False	NA	NA	False	ATTAAA	-24	NA	72441332	72388980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_72389301_72390180_72390353_72390463_72390563_72395881_72395948_72420359_72420550_72427353_72427507_72427996_72428146_72429149_72429217_72429860_72430013_72431240_72431378_72436713_72436780_72440823
transcript_849.nic	chr1	-	1670	11	ISM	ENSMUSG00000025982.14	ENSMUST00000027127.14	6195	25	-63	17982	-63	0	5prime_fragment	FALSE	canonical	3	1138	junction_7	128.097970319596	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTTGCTTTTAAAAATT	NA	False	NA	NA	False	AAAAAG	-13	NA	55066703	55042309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55053722_55055534_55055650_55055937_55056043_55058392_55058560_55066497
transcript_8493.known	chr11	+	3931	7	FSM	ENSMUSG00000020794.14	ENSMUST00000138247.8	3931	7	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	366.180017963236	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGAGCTATTTTGGTTTT	NA	False	NA	11	True	AATAAA	-20	NA	72498108	72577307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_72498462_72536362_72536479_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
transcript_8496.known	chr11	+	3815	6	FSM	ENSMUSG00000020794.14	ENSMUST00000021148.13	3815	6	0	0	0	0	multi-exon	FALSE	canonical	3	783	junction_5	11.0453610171873	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTATGAGCTATTTTGGTTTT	NA	False	NA	11	True	AATAAA	-20	NA	72498108	72577307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_72498462_72553896_72554000_72563785_72563884_72568530_72568710_72570194_72570319_72574349
transcript_85.known	SIRV2	-	686	5	FSM	SIRV2A	SIRV203	686	5	0	0	0	0	multi-exon	FALSE	canonical	3	2087	junction_4	259.923065540556	844	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTAATTGACGTGGACGTTTC	NA	False	NA	NA	False	NA	NA	NA	5895	3665	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV2_-_3826_3966_4095_4338_4480_4687_4801_5751
transcript_850.known	chr1	-	3403	10	FSM	ENSMUSG00000025982.14	ENSMUST00000187500.7	3403	10	0	0	0	0	multi-exon	FALSE	canonical	3	1240	junction_5	107.350930234545	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAGTTGCTTTTAAAAATT	NA	False	NA	NA	False	AAAAAG	-13	NA	55066623	55042309	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_55042365_55042451_55042650_55044960_55045083_55045329_55045543_55046638_55046877_55051260_55051432_55053641_55055650_55055937_55056043_55058392_55058560_55066497
transcript_8500.nnic	chr11	+	1858	5	NIC	ENSMUSG00000020794.14	novel	3815	6	NA	NA	-15	-1869	combination_of_known_splicesites	FALSE	canonical	2	11	junction_1	341.390538826137	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGTCAAGTTGTTGGCTTTT	NA	False	NA	NA	False	AATATA	-16	NA	72498093	72575438	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_72498462_72563785_72563884_72568530_72568710_72570194_72570319_72574349
transcript_8501.known	chr11	+	8030	25	FSM	ENSMUSG00000020790.15	ENSMUST00000155998.2	8030	25	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	42.0138659320415	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTTACTTGGACTAATGTG	NA	False	NA	NA	False	AATAAA	-25	NA	72580831	72662972	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_72580861_72602982_72603176_72605190_72605310_72613453_72613590_72619586_72619711_72621297_72621448_72623073_72623240_72629077_72629283_72630814_72630884_72631227_72631428_72637681_72637780_72640125_72640355_72640905_72641005_72641226_72641381_72642890_72643060_72644425_72644545_72645162_72645320_72646515_72646717_72648118_72648296_72649278_72649427_72650741_72650833_72651065_72651191_72652188_72652336_72655602_72655694_72658338
transcript_8504.known	chr11	+	12106	13	FSM	ENSMUSG00000020783.15	ENSMUST00000021135.5	12106	13	0	0	0	0	multi-exon	FALSE	canonical	3	251	junction_10	28.6544305280857	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCATTAAGGCCATGTGGTT	NA	False	NA	4	True	NA	NA	NA	72938608	72980143	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_72938909_72940684_72940751_72944248_72944355_72955813_72955940_72956396_72956526_72957508_72957586_72958528_72958638_72960539_72960640_72961623_72961728_72964051_72964347_72966440_72966596_72968680_72968843_72969766
transcript_8508.known	chr11	+	3591	3	FSM	ENSMUSG00000020783.15	ENSMUST00000151823.2	3591	3	0	0	0	0	multi-exon	FALSE	canonical	3	280	junction_1	2.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	CAAAAAAAAAAAAAAATCCC	NA	False	NA	NA	False	NA	NA	NA	72938698	72947563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_72938909_72940684_72940751_72944248
transcript_8511.nic	chr11	+	866	5	ISM	ENSMUSG00000005947.12	ENSMUST00000006101.4	3845	31	47762	0	47762	0	3prime_fragment	FALSE	canonical	3	28	junction_3	3.24037034920393	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATGTTGTTTGAGACA	NA	False	NA	9	True	ATTAAA	-18	NA	73029170	73038272	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_73029338_73029592_73029689_73031492_73031589_73036366_73036478_73037876
transcript_8514.known	chr11	-	2810	1	FSM	ENSMUSG00000050107.3	ENSMUST00000052140.3	2810	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	15	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGTTTGAGATTTGGCTTAT	NA	False	NA	-7	True	AATAAA	-17	NA	73029120	73026310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_73026300_73029100
transcript_8516.known	chr11	-	1332	2	FSM	ENSMUSG00000047260.5	ENSMUST00000054952.4	1332	2	0	0	0	0	multi-exon	FALSE	canonical	3	946	junction_1	0	247	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGTTGCGCATGGAATTTG	NA	False	NA	-27	True	AATAAA	-25	NA	73067863	73066344	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_73067578_73067764
transcript_8517.known	chr11	-	563	2	FSM	ENSMUSG00000047260.5	ENSMUST00000108480.2	563	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGCTCTTGCCAGAATTAAC	NA	False	NA	NA	False	TTTAAA	-12	NA	73067828	73067161	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_73067578_73067681
transcript_8521.known	chr11	+	1523	4	FSM	ENSMUSG00000040158.13	ENSMUST00000040687.12	1523	4	0	0	0	0	multi-exon	FALSE	canonical	3	98	junction_1	3.09120616516523	21	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGTTTCTTTGTCTGGAAACC	4208	False	NA	NA	False	AGTAAA	-16	NA	73067908	73072978	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_73068169_73071214_73071335_73071556_73071635_73071913
transcript_8522.known	chr11	-	2723	12	FSM	ENSMUSG00000005949.10	ENSMUST00000108476.8	2723	12	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_11	20.3534877308514	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACACTCGGAACGTTTACTAG	4465	False	NA	-1	True	ATTAAA	-23	NA	73089868	73074422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_73075878_73076063_73076182_73077114_73077286_73078347_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503_73082589_73083880_73083960_73087463_73087544_73087924_73088079_73089743
transcript_8523.known	chr11	-	2570	11	FSM	ENSMUSG00000005949.10	ENSMUST00000006103.9	2570	11	0	0	0	0	multi-exon	FALSE	canonical	3	46	junction_10	9.23525852372309	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CACTCGGAACGTTTACTAGA	4465	False	NA	0	True	ATTAAA	-24	NA	73089868	73074421	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_73075878_73076063_73076182_73077114_73077286_73078347_73078468_73078562_73078663_73079255_73079388_73079514_73079619_73082503_73082589_73083880_73083960_73087463_73087544_73089743
transcript_8524.known	chr11	+	2808	7	FSM	ENSMUSG00000005951.14	ENSMUST00000006105.7	2808	7	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_6	1.34370962471642	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCCCTTTGATGAACACACAC	4992	False	NA	NA	False	AATAAA	-22	NA	73090285	73115337	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_73090507_73094747_73094890_73104156_73104341_73104880_73105034_73105790_73105967_73108624_73108826_73113606
transcript_8526.nic	chr11	-	1683	7	NIC	ENSMUSG00000020774.10	novel	1530	6	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	7	junction_5	6.39444203108363	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAGTGATGACTGTGATA	NA	False	NA	NA	False	ATTAAA	-16	NA	73215460	73195817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_73196460_73199534_73199645_73204335_73204444_73210620_73210715_73212911_73213108_73213904_73214058_73215080
transcript_853.known	chr1	+	1733	5	FSM	ENSMUSG00000025981.14	ENSMUST00000027125.7	1733	5	0	0	0	0	multi-exon	FALSE	canonical	3	135	junction_4	22.7486263321547	160	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTTGGTTATTTAAATCTTT	3559	False	NA	22	True	AATAAA	-28	NA	55091928	55111861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_55092150_55100433_55100584_55103339_55103533_55106655_55106758_55110794
transcript_8531.known	chr11	-	1530	6	FSM	ENSMUSG00000020774.10	ENSMUST00000021119.9	1530	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	4.1182520563948	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTCTAGTGATGACTGTGATA	NA	False	NA	NA	False	ATTAAA	-16	NA	73215460	73195817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_73196460_73199534_73199645_73204335_73204444_73210620_73210715_73212911_73213108_73215080
transcript_8534.known	chr11	+	1274	9	FSM	ENSMUSG00000112920.2	ENSMUST00000092926.11	1274	9	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	2.3418742493994	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTTTTTATAAAAGTAAAACT	7171	False	NA	NA	False	NA	NA	NA	73220566	73236870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_73220602_73221913_73222021_73224123_73224253_73226835_73226897_73227020_73227117_73231076_73231411_73234562_73234687_73235471_73235570_73236580
transcript_8536.known	chr11	+	5379	26	FSM	ENSMUSG00000020741.18	ENSMUST00000092915.12	5379	26	0	0	0	0	multi-exon	TRUE	canonical	0	0	junction_12	69.5319897601097	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCCCCAGCCTTTCCTGTGT	NA	False	NA	26	True	AATAAA	-20	NA	74540340	74561673	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_74540521_74547248_74547452_74547993_74548166_74550011_74550156_74550308_74550434_74550519_74550675_74550774_74550901_74551177_74551326_74551489_74551583_74552222_74552918_74554205_74554433_74554609_74554715_74554856_74554958_74555599_74555753_74555832_74555896_74556007_74556253_74556518_74556604_74556748_74556903_74556980_74557121_74557767_74557849_74557925_74558052_74558142_74558265_74558492_74558587_74558672_74558808_74558892_74558967_74560240
transcript_8547.known	chr11	-	5803	11	FSM	ENSMUSG00000020745.16	ENSMUST00000021091.15	5803	11	0	0	0	0	multi-exon	FALSE	canonical	3	936	junction_5	79.0964600977819	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GATCTGGTGGGGTTTTTTTC	NA	False	NA	NA	False	ATTAAA	-15	NA	74615496	74564774	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_74568569_74570283_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614824
transcript_8550.known	chr11	-	5789	11	FSM	ENSMUSG00000020745.16	ENSMUST00000102520.9	5789	11	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_10	313.620790127185	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGATCTGGTGGGGTTTTTTT	NA	False	NA	NA	False	ATTAAA	-14	NA	74614684	74564775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_74568569_74570283_74570441_74573060_74573163_74574284_74574514_74575231_74575335_74576721_74576891_74579802_74580010_74581035_74581111_74581351_74581437_74590136_74590347_74614025
transcript_856.known	chr1	+	834	4	FSM	ENSMUSG00000025981.14	ENSMUST00000087617.11	834	4	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	69.4694177318336	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCACTTGTACATAGAATT	3559	False	NA	NA	False	NA	NA	NA	55091928	55111112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_55092150_55103339_55103533_55106655_55106758_55110794
transcript_8565.known	chr11	+	2073	11	FSM	ENSMUSG00000010554.15	ENSMUST00000010698.13	2073	11	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_7	160.067766898898	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCCATATTATAAAATAGCTT	8494	False	NA	NA	False	NA	NA	NA	74661655	74708720	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_74661811_74664347_74664476_74674883_74675084_74678380_74678522_74683028_74683145_74686807_74686951_74693718_74693839_74694656_74694727_74696078_74696169_74707695_74707870_74707984
transcript_8566.nic	chr11	+	763	2	ISM	ENSMUSG00000038290.16	ENSMUST00000045281.13	5848	19	-31	234905	-31	-62663	5prime_fragment	FALSE	canonical	3	122	junction_1	0	11	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAAAGGGAAAAAAGATTGA	NA	False	NA	7	True	NA	NA	NA	74816617	74820369	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_74816830_74819818
transcript_8568.known	chr11	+	3389	15	FSM	ENSMUSG00000038335.14	ENSMUST00000045807.14	3389	15	0	0	0	0	multi-exon	FALSE	canonical	3	655	junction_8	75.3882467968452	626	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGCTTGTCTGGATTCTAGTA	NA	False	NA	26	True	AATAAA	-18	NA	74788903	74800168	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_74789042_74789202_74789307_74790007_74790228_74790334_74790470_74790978_74791404_74792314_74792475_74792834_74792993_74794645_74794840_74795654_74795818_74796031_74796143_74796716_74796850_74798160_74798278_74798649_74798791_74798871_74798947_74799053
transcript_857.known	chr1	-	2423	12	FSM	ENSMUSG00000025980.15	ENSMUST00000027123.15	2423	12	0	0	0	0	multi-exon	FALSE	canonical	2	4506	junction_7	645.86437693097	1796	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4455	False	NA	-6	True	AATAAA	-16	NA	55127183	55116993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55126937
transcript_8575.known	chr11	-	3699	9	FSM	ENSMUSG00000001323.18	ENSMUST00000065211.9	3699	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_8	25.2140833662459	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AAACACACGATGGTAAGAGA	NA	False	NA	NA	False	AATAAA	-13	NA	74816624	74797184	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74810262_74810489_74816444
transcript_858.nic	chr1	-	2432	12	NIC	ENSMUSG00000025980.15	novel	2423	12	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	2	335	junction_11	1793.34097000842	619	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGGTTGTGTTACCCTTTC	4236	False	NA	-6	True	AATAAA	-16	NA	55127402	55116993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_55117600_55117687_55117867_55118214_55118390_55119260_55119507_55120231_55120332_55120818_55120988_55121216_55121311_55122225_55122322_55122883_55122967_55123691_55123945_55125924_55126101_55127147
transcript_8580.known	chr11	-	3183	8	FSM	ENSMUSG00000001323.18	ENSMUST00000121738.8	3183	8	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_7	16.4527771987291	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATACATCTCATTTATTTGG	NA	False	NA	NA	False	AATAAA	-10	NA	74816774	74797624	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803960_74816444
transcript_8586.known	chr11	-	3239	9	FSM	ENSMUSG00000001323.18	ENSMUST00000108448.8	3239	9	0	0	0	0	multi-exon	FALSE	non_canonical	0	0	junction_7	30.0956807532244	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCATTTATTTGGGGGTGT	NA	False	NA	NA	False	AATAAA	-16	NA	74816599	74797618	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_74799670_74799821_74800032_74800519_74800595_74801026_74801147_74801868_74801973_74802094_74802222_74803787_74803959_74810262_74810489_74816444
transcript_8591.known	chr11	-	2139	13	FSM	ENSMUSG00000078789.10	ENSMUST00000044949.11	2139	13	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_12	23.7876893931854	69	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACATTTTTGGTGGAAGTCA	NA	False	NA	53	True	NA	NA	NA	75081345	75068468	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_75069214_75069750_75069858_75069998_75070140_75070551_75070631_75071386_75071488_75071613_75071771_75072118_75072188_75074027_75074150_75074294_75074453_75074993_75075116_75076610_75076675_75076788_75076942_75081224
transcript_8596.known	chr11	-	2670	2	FSM	ENSMUSG00000038268.5	ENSMUST00000071562.3	2670	2	0	0	0	0	multi-exon	FALSE	canonical	3	105	junction_1	0	69	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGGTCTGTAGGCCCTGGCT	1637	False	NA	NA	False	AATAAA	-18	NA	75069661	75066767	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_75069214_75069437
transcript_8597.known	chr11	-	745	2	FSM	ENSMUSG00000038268.5	ENSMUST00000123489.2	745	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AGGACACACATAAGCCCAGA	1685	False	NA	-105	True	NA	NA	NA	75069613	75068626	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_75069214_75069455
transcript_8600.known	chr11	-	5077	17	FSM	ENSMUSG00000000751.14	ENSMUST00000092907.12	5077	17	0	0	0	0	multi-exon	FALSE	canonical	3	1486	junction_1	165.245638652734	162	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGTGCTGTTCTGACTTTTT	NA	False	NA	NA	False	ATTAAA	-17	NA	75239150	75188991	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_75192230_75193493_75193581_75196933_75197042_75197940_75198118_75200958_75201092_75203125_75203275_75203518_75203659_75203803_75203997_75204126_75204196_75205638_75205742_75206930_75207064_75209237_75209358_75219498_75219588_75231115_75231225_75231853_75231933_75232969_75233021_75239051
transcript_8604.nic	chr11	-	779	4	ISM	ENSMUSG00000000751.14	ENSMUST00000154894.2	716	7	-59	23839	-30	2099	5prime_fragment	FALSE	canonical	3	1885	junction_3	45.784519460427	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	55	TAAAAAAATAAGGATGTACT	NA	False	NA	NA	False	NA	NA	NA	75239180	75230704	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_75231225_75231853_75231933_75232969_75233021_75239051
transcript_8607.known	chr11	+	3517	11	FSM	ENSMUSG00000018809.3	ENSMUST00000044530.3	3517	11	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_7	9.20923449587424	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AACTCTGTATTGGTTTCCTA	NA	False	NA	35	True	AATAAA	-37	NA	75239258	75296531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_75239578_75240494_75240641_75273075_75273221_75278236_75278327_75280897_75282054_75290426_75290610_75291107_75291272_75292943_75293077_75293934_75294052_75294242_75294367_75295591
transcript_8613.known	chr11	-	1832	8	FSM	ENSMUSG00000000753.16	ENSMUST00000000769.14	1832	8	0	0	0	0	multi-exon	TRUE	canonical	3	25	junction_1	3.91751691451488	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GGGAAATCAACAGCTGCATT	5378	False	NA	NA	False	NA	NA	NA	75313527	75300594	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_75301220_75301659_75301871_75304732_75304876_75305746_75305951_75306400_75306557_75307055_75307255_75308734_75308823_75313321
transcript_8614.known	chr11	-	605	4	FSM	ENSMUSG00000000753.16	ENSMUST00000125982.2	605	4	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_3	3.39934634239519	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATGCCTGGCGTGAAGTTGCT	5527	False	NA	NA	False	NA	NA	NA	75313378	75306295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_75306557_75307055_75307255_75308734_75308823_75313321
transcript_8615.known	chr11	+	564	5	FSM	ENSMUSG00000038217.14	ENSMUST00000124718.8	564	5	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	11.2249721603218	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGCCTCTGGGATGGATGAG	4014	False	NA	NA	False	NA	NA	NA	75352540	75360489	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_75352582_75354518_75354684_75359382_75359466_75359667_75359751_75360297
transcript_8616.nnic	chr11	+	1533	5	NNC	ENSMUSG00000038217.14	novel	1153	5	NA	NA	-52	-11	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_4	13.1220234720107	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGATTTCATCAGTCTCTTGT	NA	False	NA	21	True	AATAAA	-13	NA	75358852	75361714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_75359204_75359382_75359466_75359667_75359751_75360297_75360926_75361326
transcript_8618.nic	chr11	+	1937	4	ISM	ENSMUSG00000038217.14	ENSMUST00000108435.2	1112	5	-52	8	-52	-8	intron_retention	FALSE	canonical	3	27	junction_1	3.09120616516523	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCATCAGTCTCTTGTGAA	NA	False	NA	24	True	AATAAA	-16	NA	75358852	75361717	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_75359204_75359382_75359466_75359667_75359751_75360297
transcript_8619.known	chr11	+	1752	3	FSM	ENSMUSG00000085148.2	ENSMUST00000149940.2	1752	3	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_2	6.5	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTTTTAAAATTTTTACTCT	3838	False	NA	8	True	AATAAA	-19	NA	75352364	75357502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_75352582_75354518_75354684_75356132
transcript_8621.known	chr11	+	2887	11	FSM	ENSMUSG00000038188.18	ENSMUST00000042808.13	2887	11	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_9	2.37697286480094	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAATTAATTTATTTGGGGG	NA	False	NA	NA	False	ATTAAA	-25	NA	75404365	75417408	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_75404517_75404830_75404890_75405134_75405237_75405991_75406515_75411119_75411339_75411728_75411858_75412777_75412882_75413004_75413123_75414600_75414723_75414816_75414964_75416195
transcript_8622.known	chr11	+	3761	12	FSM	ENSMUSG00000017781.18	ENSMUST00000143219.8	3761	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_5	251.085083205404	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTACAGTATGGATTCGGGC	NA	False	NA	NA	False	AATAAA	-24	NA	75478922	75519630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_75479179_75483014_75483046_75489005_75489155_75494214_75494307_75498932_75498941_75499930_75500006_75503045_75503130_75510065_75510144_75510281_75510393_75511079_75511203_75516290_75516357_75516942
transcript_8624.nnic	chr11	-	695	4	Antisense	novelGene_ENSMUSG00000017781.18_AS	novel	NA	NA	NA	NA	NA	NA	multi-exon	FALSE	canonical	1	3	junction_3	6.79869268479038	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TACCATTTATAATCTATCTC	NA	False	NA	NA	False	AATAAA	-16	NA	75521615	75516132	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	Antisense_chr11_-_75516409_75518486_75518577_75519066_75519211_75521430
transcript_8627.known	chr11	+	2679	12	FSM	ENSMUSG00000006127.10	ENSMUST00000006286.9	2679	12	0	0	0	0	multi-exon	FALSE	canonical	3	99	junction_6	22.5527847321246	39	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGTGACTCCTTTGATGGG	5439	False	NA	27	True	TATAAA	-18	NA	75521813	75539697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_75522024_75523894_75524003_75524288_75524398_75527769_75527887_75528235_75528412_75528970_75529083_75530281_75530392_75536253_75536444_75537611_75537750_75538018_75538103_75538227_75538333_75538477
transcript_8636.known	chr11	+	3642	3	FSM	ENSMUSG00000017776.16	ENSMUST00000017920.14	3642	3	0	0	0	0	multi-exon	FALSE	canonical	3	225	junction_2	120.5	19	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAATGTTTGGCTTGGTGA	2098	False	NA	10	True	NA	NA	NA	75570084	75596891	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_75570491_75583022_75583559_75594191
transcript_8645.known	chr11	+	2100	6	FSM	ENSMUSG00000020849.14	ENSMUST00000067664.10	2100	6	0	0	0	0	multi-exon	FALSE	canonical	3	8977	junction_5	918.346862574267	1594	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTGTAACTATGGATCATTT	2991	False	NA	26	True	ATTAAA	-22	NA	75623694	75656671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_75623918_75642706_75642907_75646399_75646507_75647642_75647850_75650117_75650255_75655445
transcript_8647.known	chr11	+	599	5	FSM	ENSMUSG00000020849.14	ENSMUST00000134745.8	599	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	4641.68485035337	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	AGAGCAGAATAAAGAAGCGC	3035	False	NA	NA	False	NA	NA	NA	75623738	75655449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_75623918_75642706_75642907_75646399_75646479_75650117_75650255_75655445
transcript_8658.known	chr11	-	2199	9	FSM	ENSMUSG00000020847.16	ENSMUST00000121287.8	2199	9	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_8	5.97390157267426	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GACTGGGCGCAAGAGTCGTT	NA	False	NA	-10	True	AATAAA	-24	NA	75828564	75721824	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_75723041_75724227_75724375_75725588_75725703_75745129_75745305_75769774_75769862_75797343_75797474_75799736_75799881_75801775_75801886_75828488
transcript_8660.known	chr11	+	921	2	FSM	ENSMUSG00000053783.6	ENSMUST00000066408.6	921	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCTGAAGGAAGCCGATGCTT	NA	False	NA	NA	False	AATAAA	-18	NA	75890737	75894395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_75891093_75893829
transcript_8661.known	chr11	-	2833	22	FSM	ENSMUSG00000017288.16	ENSMUST00000056601.11	2833	22	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_11	13.2142642642469	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCTCCATCCCTGAAGCTGG	NA	False	NA	68	True	ATTAAA	-16	NA	76070473	75937051	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_75937409_75937890_75937996_75939265_75939404_75953810_75953881_75957566_75957716_75967260_75967340_75967865_75967949_75971972_75972121_75973267_75973511_75983046_75983142_75992812_75992915_76004766_76004909_76007884_76008028_76008487_76008632_76012343_76012423_76025234_76025355_76027024_76027141_76029133_76029221_76054623_76054691_76057024_76057075_76065452_76065534_76070238
transcript_8664.known	chr11	-	650	2	FSM	ENSMUSG00000017288.16	ENSMUST00000129256.2	650	2	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_1	0	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTACTGTTTATGTGTGTATG	NA	False	NA	-9	True	AATAAA	-16	NA	76070464	76067784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_76068209_76070238
transcript_8665.known	chr11	-	478	3	FSM	ENSMUSG00000017288.16	ENSMUST00000140886.3	478	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_1	39.5	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AACCAAACCAGATGAGTGGT	NA	False	NA	NA	False	AATAAA	-26	NA	76070438	76061339	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_76061537_76065452_76065534_76070238
transcript_8666.known	chr11	-	1434	9	FSM	ENSMUSG00000017286.16	ENSMUST00000017430.12	1434	9	0	0	0	0	multi-exon	FALSE	canonical	3	653	junction_6	49.1602926659311	87	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAACAAAAAAAAAACAAAAG	NA	False	NA	NA	False	NA	NA	NA	76134551	76112335	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_76112858_76123847_76123935_76124027_76124142_76124725_76124813_76125214_76125352_76128494_76128640_76130277_76130399_76131698_76131749_76134380
transcript_8672.known	chr11	+	2130	5	FSM	ENSMUSG00000069808.14	ENSMUST00000094014.10	2130	5	0	0	0	0	multi-exon	FALSE	canonical	3	42	junction_2	6.18465843842649	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATTTGTTATGTGCCCTGGCG	3406	False	NA	NA	False	ATTAAA	-17	NA	76092840	76100242	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_76093082_76093377_76093462_76096079_76096282_76097953_76098050_76098735
transcript_8674.known	chr11	-	3540	2	FSM	ENSMUSG00000049396.7	ENSMUST00000102500.5	3540	2	0	0	0	0	multi-exon	FALSE	canonical	3	437	junction_1	0	74	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTTGAGCCTTTCTCAGAAG	NA	False	NA	-1	True	AATAAA	-22	NA	76108490	76101396	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_76104750_76108303
transcript_8675.known	chr11	+	581	2	FSM	ENSMUSG00000038057.5	ENSMUST00000040806.5	581	2	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGAGAGTGGAGTCTGTGGCA	NA	False	NA	NA	False	AATAAA	-15	NA	76108433	76109492	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_76108575_76109052
transcript_8678.known	chr11	+	1510	4	FSM	ENSMUSG00000038046.5	ENSMUST00000040577.5	1510	4	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	6.53197264742181	103	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCATATGAGTGTTTGCAGG	550	False	NA	23	True	ATTAAA	-31	NA	76134540	76141445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_76134913_76135104_76135350_76138172_76138341_76140720
transcript_8679.nic	chr11	+	834	3	ISM	ENSMUSG00000038046.5	ENSMUST00000040577.5	1510	4	11	3045	-10	2690	5prime_fragment	FALSE	canonical	3	128	junction_1	8	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGTACATGTGTATGT	561	False	NA	NA	False	NA	NA	NA	76134551	76138400	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_76134913_76135104_76135350_76138172
transcript_8680.known	chr11	+	957	2	FSM	ENSMUSG00000038046.5	ENSMUST00000125463.3	957	2	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGTTGTTTGTTTGTTTG	571	False	NA	NA	False	AAAAAG	-4	NA	76134561	76135710	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_76134913_76135104
transcript_8681.nnic	chr11	-	1749	8	NNC	ENSMUSG00000020844.7	novel	2755	8	NA	NA	111669	-760	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_7	32.3412922387691	29	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTTACTGTGTGCTTAGTT	1397	False	NA	-5	True	NA	NA	NA	76178225	76148783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_76149574_76152367_76152493_76153833_76154014_76163201_76163309_76164796_76164898_76165340_76165475_76169299_76169418_76178031
transcript_8682.nnic	chr11	-	1717	8	NNC	ENSMUSG00000020844.7	novel	2755	8	NA	NA	111634	-760	at_least_one_novel_splicesite	FALSE	canonical	3	18	junction_7	33.6961210145704	12	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCTTACTGTGTGCTTAGTT	1362	False	NA	-5	True	NA	NA	NA	76178260	76148783	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_76149574_76152367_76152493_76153833_76154014_76163201_76163309_76164796_76164898_76165340_76165475_76169299_76169418_76178098
transcript_8686.known	chr11	+	746	4	FSM	ENSMUSG00000020843.16	ENSMUST00000120699.8	746	4	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	120.856204731996	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGGGGAGGTGGTATGGCAGA	NA	False	NA	-49	True	NA	NA	NA	76297777	76305155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_76297970_76300467_76300665_76301952_76302026_76304871
transcript_8688.known	chr11	+	2817	4	FSM	ENSMUSG00000020843.16	ENSMUST00000021203.7	2817	4	0	0	0	0	multi-exon	FALSE	canonical	3	248	junction_1	9.62635271879577	57	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTCAGCTGATTAAGTCCCAC	NA	False	NA	3	True	AATAAA	-15	NA	76297968	76307118	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_76298269_76300467_76300665_76301952_76302026_76304871
transcript_8690.known	chr11	+	362	3	FSM	ENSMUSG00000020843.16	ENSMUST00000152183.2	362	3	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	125	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTGCTTTCTCTGCTGCAA	NA	False	NA	NA	False	AGTAAA	-28	NA	76298016	76304908	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_76298269_76301952_76302026_76304871
transcript_8691.known	chr11	+	311	1	FSM	ENSMUSG00000024205.8	ENSMUST00000136893.3	311	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	165	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ACCCTCCCCCAATAAAAGAT	NA	False	NA	NA	False	NA	NA	NA	76492144	76492455	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_76492100_76492500
transcript_8694.known	chr11	-	4289	9	FSM	ENSMUSG00000010392.9	ENSMUST00000010536.9	4289	9	0	0	0	0	multi-exon	FALSE	canonical	3	228	junction_2	27.7778576387741	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCATGTCTTTGGTTATCTG	NA	False	NA	NA	False	AATAAA	-16	NA	76654405	76617427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_76621060_76625394_76625478_76628207_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
transcript_8698.nic	chr11	-	843	7	ISM	ENSMUSG00000010392.9	ENSMUST00000010536.9	4289	9	-37	10548	-37	-10548	5prime_fragment	FALSE	canonical	3	229	junction_5	30.259984578097	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAATTATGGAATTTGCCTA	NA	False	NA	NA	False	AAAACA	-6	NA	76654442	76627975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_76628238_76639333_76639409_76641636_76641729_76645194_76645303_76645538_76645627_76652060_76652182_76654345
transcript_87.known	SIRV2	+	523	1	FSM	SIRV2B	SIRV205	523	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	309	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CATGGCGTCTACCGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	1108	1631	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV2_+_1100_1600
transcript_8703.known	chr11	+	2497	12	FSM	ENSMUSG00000020840.11	ENSMUST00000021197.10	2497	12	0	0	0	0	multi-exon	FALSE	canonical	3	631	junction_4	56.5853410915431	920	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCAAGCCGGCGTGTCTGGTC	NA	False	NA	30	True	AATAAA	-19	NA	76836329	76878205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_76836720_76837067_76837266_76840785_76840896_76841869_76842012_76843326_76843416_76845335_76845429_76856640_76856797_76857557_76857717_76857819_76857888_76859428_76859547_76862734_76862805_76877301
transcript_8712.known	chr11	-	3114	7	FSM	ENSMUSG00000037958.14	ENSMUST00000102494.8	3114	7	0	0	0	0	multi-exon	FALSE	canonical	3	222	junction_6	27.2457947825593	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CCTGACATCCTGTAAATTTA	NA	False	NA	-5	True	AATAAA	-28	NA	76969261	76935117	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_76937581_76939178_76939288_76940098_76940307_76941409_76941539_76945769_76945827_76967479_76967571_76969204
transcript_8719.known	chr11	-	1463	7	FSM	ENSMUSG00000044328.14	ENSMUST00000060417.11	1463	7	0	0	0	0	multi-exon	FALSE	canonical	3	152	junction_1	13.984117975602	39	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTTGGGAGATTGTCTCT	NA	False	NA	1	True	ATTAAA	-21	NA	77404196	77398924	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_77399204_77399282_77399818_77399901_77400100_77400423_77400553_77403478_77403521_77403722_77403792_77403985
transcript_872.known	chr1	+	774	4	FSM	ENSMUSG00000073676.5	ENSMUST00000075242.7	774	4	0	0	0	0	multi-exon	FALSE	canonical	3	7281	junction_2	538.928154354136	4020	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTGGACAGTCTTTGGTAATT	NA	False	NA	13	True	AATAAA	-14	NA	55127290	55130466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_55127572_55128209_55128375_55129871_55129962_55130228
transcript_8721.nnic	chr11	-	1365	6	NIC	ENSMUSG00000044328.14	novel	1463	7	NA	NA	29	0	combination_of_known_splicesites	FALSE	canonical	2	14	junction_5	68.0458668840364	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCGTTGGGAGATTGTCTCT	NA	False	NA	1	True	ATTAAA	-21	NA	77404167	77398924	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_77399204_77399282_77399818_77399901_77400100_77400423_77400553_77403478_77403521_77403985
transcript_8730.known	chr11	+	5158	4	FSM	ENSMUSG00000037857.17	ENSMUST00000100802.11	5158	4	0	0	0	0	multi-exon	FALSE	canonical	3	165	junction_1	19.0146142626022	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTTTTCTGATTTTTTGT	NA	False	NA	17	True	ATTAAA	-18	NA	77576980	77603567	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_77577334_77582367_77584081_77596334_77596368_77600508
transcript_8736.nnic	chr11	-	1709	8	NNC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	188	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_3	95.4131724102482	14	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCGGTGGTCTTTATTT	NA	False	NA	-2	True	AATAAA	-22	NA	77784734	77771440	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_77772081_77772326_77772403_77772943_77773002_77773442_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
transcript_8740.known	chr11	-	1998	8	FSM	ENSMUSG00000017453.5	ENSMUST00000017597.5	1998	8	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_3	30.9654184996286	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCGGTGGTCTTTATTT	NA	False	NA	-2	True	AATAAA	-22	NA	77784922	77771440	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_77772081_77772326_77772403_77772943_77773103_77773442_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
transcript_8746.nic	chr11	-	2098	7	NIC	ENSMUSG00000017453.5	novel	1998	8	NA	NA	240	0	intron_retention	FALSE	canonical	3	232	junction_1	25.5304828696121	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATCTGCGGTGGTCTTTATTT	NA	False	NA	-2	True	AATAAA	-22	NA	77784682	77771440	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_77772081_77772326_77772403_77772943_77773590_77773954_77774138_77774604_77774819_77782937_77783087_77784492
transcript_8754.known	chr11	+	1779	5	FSM	ENSMUSG00000020834.18	ENSMUST00000021187.12	1779	5	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_1	5.93190525885234	22	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTCTGGCTCCCGCCTCTT	NA	False	NA	5	True	AATAAA	-17	NA	77923105	77928692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_77923325_77923410_77923530_77924838_77924963_77925100_77925413_77927687
transcript_8755.known	chr11	+	4410	15	FSM	ENSMUSG00000037791.16	ENSMUST00000049167.14	4410	15	0	0	0	0	multi-exon	FALSE	canonical	3	95	junction_1	13.672742137224	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTCTGCCTGTCTGTCC	NA	False	NA	18	True	TATAAA	-22	NA	77873627	77921365	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_77874204_77874841_77875024_77897552_77897626_77900226_77900621_77903996_77904118_77906323_77906457_77908890_77909056_77913183_77913343_77913852_77914646_77915786_77915913_77916710_77916855_77918145_77918245_77919052_77919136_77919668_77919808_77920142
transcript_8756.known	chr11	+	2621	11	FSM	ENSMUSG00000061981.15	ENSMUST00000072289.12	2621	11	0	0	0	0	multi-exon	FALSE	canonical	3	351	junction_3	23.4778619128744	49	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCTTTCATCGTATATTCTGT	NA	False	NA	21	True	AATAAA	-18	NA	77928756	77951260	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_77928939_77940303_77940386_77945610_77945702_77946582_77946707_77948087_77948207_77948313_77948428_77948527_77948648_77948725_77948941_77949332_77949517_77949770_77949921_77950020
transcript_8757.nnic	chr11	-	1865	11	NNC	ENSMUSG00000020832.15	novel	2014	10	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	61.7643910356121	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATCTTTTATTTCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	77971221	77964201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_77964216_77964376_77965001_77965105_77965187_77965303_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
transcript_8760.known	chr11	-	2014	10	FSM	ENSMUSG00000020832.15	ENSMUST00000021183.4	2014	10	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_8	16.2890556304942	100	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATCTTTTATTTCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	77971209	77964201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_77965001_77965105_77965187_77965303_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
transcript_8761.nnic	chr11	-	2015	10	NNC	ENSMUSG00000020832.15	novel	2014	10	NA	NA	-12	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_2	63.2223198593271	11	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATCTTTTATTTCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	77971221	77964201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_77965001_77965105_77965187_77965314_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
transcript_8763.known	chr11	-	2131	9	FSM	ENSMUSG00000020832.15	ENSMUST00000139731.8	2131	9	0	0	0	0	multi-exon	FALSE	canonical	3	178	junction_7	16.6466025062173	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCTTATCTTTTATTTCTTT	NA	False	NA	-2	True	AATAAA	-22	NA	77971209	77964201	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_77965001_77965105_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
transcript_8764.nic	chr11	-	2241	8	NIC	ENSMUSG00000020832.15	novel	2131	9	NA	NA	-12	-7	intron_retention	FALSE	canonical	3	178	junction_6	17.7580105522975	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCTTATTCTTATCTTTTA	NA	False	NA	-9	True	AATAAA	-15	NA	77971221	77964208	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_77965454_77966216_77966466_77966547_77966661_77966815_77966878_77967058_77967106_77968642_77968721_77969087_77969216_77970902
transcript_8766.known	chr11	-	2078	7	FSM	ENSMUSG00000017386.11	ENSMUST00000017530.4	2078	7	0	0	0	0	multi-exon	FALSE	canonical	3	457	junction_4	31.7525152109596	47	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCAGCCTGTCTCCTCCCA	NA	False	NA	1	True	NA	NA	NA	78056415	78050225	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_78051375_78051618_78051775_78051858_78052021_78052112_78052275_78052343_78052449_78053207_78053260_78056123
transcript_8767.known	chr11	-	2809	15	FSM	ENSMUSG00000017405.15	ENSMUST00000017549.13	2809	15	0	0	0	0	multi-exon	FALSE	canonical	1	11	junction_10	13.5103890486136	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCTTATGATCTCTT	6248	False	NA	0	True	AATAAA	-14	NA	78067501	78056931	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78061621_78061698_78061779_78061915_78062125_78062936_78063069_78063276_78063510_78063750_78063957_78067385
transcript_8769.nnic	chr11	-	2650	15	NNC	ENSMUSG00000017405.15	novel	2809	15	NA	NA	9	0	at_least_one_novel_splicesite	FALSE	canonical	2	4	junction_10	14.9114734622815	6	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCTTATGATCTCTT	6257	False	NA	0	True	AATAAA	-14	NA	78067492	78056931	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78061621_78061698_78061779_78062065_78062125_78062936_78063069_78063276_78063510_78063750_78063957_78067385
transcript_8771.known	chr11	-	2882	14	FSM	ENSMUSG00000017405.15	ENSMUST00000152611.8	2882	14	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	9.26148734971841	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGGCTTATGATCTCTT	6312	False	NA	0	True	AATAAA	-14	NA	78067437	78056931	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_78057604_78057975_78058135_78058288_78058448_78058548_78058713_78058917_78059069_78059797_78059916_78060197_78060275_78061203_78061355_78061438_78061621_78061698_78062125_78062936_78063069_78063276_78063510_78063750_78063957_78067385
transcript_8772.nic	chr11	-	1399	3	ISM	ENSMUSG00000017405.15	ENSMUST00000142812.8	2876	4	-52	1607	9	-411	5prime_fragment	FALSE	canonical	3	45	junction_1	5.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTTTTTTTTTTTTTAAT	6257	False	NA	NA	False	NA	NA	NA	78067492	78062423	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_78063510_78063750_78063957_78067385
transcript_8773.nic	chr11	+	1056	5	NIC	ENSMUSG00000019437.18	novel	457	4	NA	NA	-64	1	intron_retention	FALSE	canonical	3	12	junction_1	80.151419201409	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCTCTGAAGTCCTGTTCT	NA	False	NA	NA	False	AATGAA	-2	NA	78068891	78071307	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_78069063_78069863_78070048_78070195_78070279_78070365_78070449_78070772
transcript_8776.known	chr11	-	560	5	FSM	ENSMUSG00000058546.9	ENSMUST00000102483.5	560	5	0	0	0	0	multi-exon	FALSE	canonical	3	10927	junction_1	3598.81438810061	429	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAATGCTGCTTGTCATTTGT	5963	False	NA	-14	True	CATAAA	-1	NA	78074410	78071760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_78071824_78071979_78072050_78072242_78072420_78073628_78073813_78074344
transcript_8777.known	chr11	+	457	4	FSM	ENSMUSG00000019437.18	ENSMUST00000147819.8	457	4	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	69.6036397515724	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GTAAGGGAGAACCCGGTGAA	NA	False	NA	NA	False	NA	NA	NA	78068955	78070448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78069063_78069863_78070048_78070195_78070279_78070365
transcript_8778.known	chr11	+	462	4	FSM	ENSMUSG00000019437.18	ENSMUST00000145507.8	462	4	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	84.0119039184329	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCACCAAGTTCTTCCTACAG	NA	False	NA	NA	False	NA	NA	NA	78068974	78070980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78069063_78070195_78070279_78070365_78070449_78070772
transcript_8780.known	chr11	+	1412	4	FSM	ENSMUSG00000019437.18	ENSMUST00000127587.8	1412	4	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	14.2672897060218	76	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCAAGTCTTAATTGCTCAGA	NA	False	NA	52	True	NA	NA	NA	78069510	78071646	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78069883_78070195_78070279_78070365_78070449_78070772
transcript_8784.known	chr11	+	714	3	FSM	ENSMUSG00000019437.18	ENSMUST00000108338.2	714	3	0	0	0	0	multi-exon	FALSE	canonical	3	157	junction_1	5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTGGTGTTCCTCAGCTTCC	NA	False	NA	NA	False	AATAAA	-18	NA	78069587	78070701	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78069883_78070195_78070279_78070365
transcript_8788.known	chr11	+	1368	11	FSM	ENSMUSG00000002059.19	ENSMUST00000002128.14	1368	11	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	27.8790243731735	117	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	6025	False	NA	21	True	ATTAAA	-15	NA	78079255	78083014	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78079338_78080003_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
transcript_8793.known	chr11	+	1685	10	FSM	ENSMUSG00000002059.19	ENSMUST00000108322.9	1685	10	0	0	0	0	multi-exon	FALSE	canonical	3	127	junction_1	10.0443461155462	73	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTTCTTTCTTTCTTTAAAG	6374	False	NA	21	True	ATTAAA	-15	NA	78079604	78083014	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78080217_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
transcript_8795.known	chr11	+	795	10	FSM	ENSMUSG00000002059.19	ENSMUST00000150941.8	795	10	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	46.6883547486501	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGAGCAGTGAGGACTGTCCA	6035	False	NA	NA	False	AAAAAG	-16	NA	78079265	78082664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78079338_78080396_78080489_78080955_78081022_78081114_78081217_78081303_78081369_78081510_78081563_78082033_78082116_78082190_78082282_78082400_78082509_78082599
transcript_8799.known	chr11	+	960	3	FSM	ENSMUSG00000044122.16	ENSMUST00000060539.13	960	3	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GGCAAACAGAGTGAATAATA	NA	False	NA	-30	True	NA	NA	NA	78085529	78096293	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78085781_78092637_78092719_78095665
transcript_88.known	SIRV2	+	424	1	FSM	SIRV2C	SIRV206	424	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	669	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCGAACACACTTCCATCCAC	NA	False	NA	NA	False	NA	NA	NA	4033	4457	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV2_+_4000_4500
transcript_8802.nnic	chr11	+	1212	4	NNC	ENSMUSG00000002064.11	novel	1268	3	NA	NA	-32	-10	at_least_one_novel_splicesite	FALSE	canonical	3	10	junction_3	99.5199589138893	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTATTCATTGTGTGGTC	NA	False	NA	9	True	NA	NA	NA	78136539	78146312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_78136997_78141841_78142039_78145676_78145738_78145815
transcript_8808.known	chr11	+	1268	3	FSM	ENSMUSG00000002064.11	ENSMUST00000002133.9	1268	3	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_1	4	341	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGTGTGGTCATTTATTAAG	NA	False	NA	19	True	NA	NA	NA	78136571	78146322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78136997_78141841_78142039_78145676
transcript_881.known	chr1	+	2840	8	FSM	ENSMUSG00000025979.14	ENSMUST00000162364.8	2840	8	0	0	0	0	multi-exon	FALSE	canonical	3	402	junction_7	40.5985824624356	200	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCAGTTTGTATTCTTGCTTT	NA	False	NA	13	True	CATAAA	-13	NA	55170389	55194058	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_55170519_55175835_55175899_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
transcript_8812.known	chr11	+	7443	39	FSM	ENSMUSG00000010277.8	ENSMUST00000010421.7	7443	39	0	0	0	0	multi-exon	FALSE	canonical	3	514	junction_1	88.3718730713483	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTGTGTCCTTCCCTCCTCA	NA	False	NA	21	True	AGTAAA	-14	NA	78152577	78181449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78152744_78153524_78153655_78154415_78154466_78154737_78154886_78155289_78155409_78156004_78156066_78156398_78156589_78157176_78157301_78157420_78157546_78157761_78157830_78157922_78158069_78158924_78159044_78159151_78159316_78159464_78159724_78160313_78160520_78162116_78163210_78163603_78163796_78163922_78164126_78164266_78164386_78164507_78164729_78165290_78165482_78165613_78165714_78165832_78166036_78167865_78168161_78169872_78170031_78170534_78170742_78173884_78173985_78174925_78175109_78175564_78175687_78176263_78176420_78176500_78176623_78177338_78177520_78178121_78178209_78178509_78178621_78178757_78178894_78178990_78179122_78179766_78179869_78180111_78180247_78180629
transcript_8813.known	chr11	+	3887	24	FSM	ENSMUSG00000002055.10	ENSMUST00000045026.4	3887	24	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_10	25.9765053072448	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCCAGTCCACTGAATCTT	2752	False	NA	8	True	AATAAA	-18	NA	78192354	78213283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78192537_78192720_78192847_78194871_78195867_78195968_78196147_78203940_78204016_78204173_78204267_78204338_78204474_78204645_78204766_78204989_78205083_78205168_78205283_78205530_78205625_78205786_78205935_78206013_78206117_78206334_78206469_78206725_78206868_78210292_78210405_78210811_78210899_78211157_78211279_78211386_78211499_78211868_78211950_78212087_78212244_78212323_78212399_78212511_78212593_78212953
transcript_8814.known	chr11	+	2786	9	FSM	ENSMUSG00000017390.16	ENSMUST00000017534.15	2786	9	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_5	18.6547581061776	125	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTACCGTTTTGTCAGTTTT	NA	False	NA	NA	False	NA	NA	NA	78213793	78218607	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78214049_78215215_78215340_78215429_78215642_78215734_78215790_78215874_78216036_78216154_78216239_78216467_78216643_78216760_78216961_78217087
transcript_8818.known	chr11	+	2501	12	FSM	ENSMUSG00000041958.11	ENSMUST00000048073.9	2501	12	0	0	0	0	multi-exon	FALSE	canonical	3	513	junction_10	36.2694234084327	83	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCATAACTCGTTCTTGT	NA	False	NA	28	True	NA	NA	NA	78219240	78233608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78219335_78219557_78219698_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559
transcript_8821.nnic	chr11	+	2344	11	NIC	ENSMUSG00000041958.11	novel	2501	12	NA	NA	17	0	combination_of_known_splicesites	FALSE	canonical	3	77	junction_1	151.766300607216	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGACCATAACTCGTTCTTGT	NA	False	NA	28	True	NA	NA	NA	78219257	78233608	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_78219335_78219800_78219913_78223775_78223866_78224492_78224585_78226252_78226461_78227513_78227657_78228614_78228730_78230168_78230315_78230834_78230936_78232050_78232262_78232559
transcript_8822.nnic	chr11	+	1106	5	NNC	ENSMUSG00000002058.14	novel	1329	5	NA	NA	-7	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	102.793482283655	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTGTCTATAGGGAA	NA	False	NA	19	True	AATAAA	-26	NA	78234316	78239990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_78234399_78238043_78238158_78238622_78238726_78238912_78239086_78239356
transcript_8824.known	chr11	+	1371	5	FSM	ENSMUSG00000002058.14	ENSMUST00000108295.8	1371	5	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_4	104.920207777148	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTGTCTATAGGGAA	NA	False	NA	19	True	AATAAA	-26	NA	78234331	78239990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78234613_78238043_78238158_78238622_78238726_78238912_78239086_78239290
transcript_8825.known	chr11	+	1329	5	FSM	ENSMUSG00000002058.14	ENSMUST00000002127.14	1329	5	0	0	0	0	multi-exon	FALSE	canonical	3	235	junction_3	19.8557296516648	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGTGTGTCTATAGGGAA	NA	False	NA	19	True	AATAAA	-26	NA	78234307	78239990	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78234613_78238043_78238158_78238622_78238726_78238912_78239086_78239356
transcript_8827.known	chr11	-	2412	12	FSM	ENSMUSG00000001095.6	ENSMUST00000001122.6	2412	12	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_6	4.88884714899955	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCCTCACCGACCCTTCCTC	NA	False	NA	NA	False	CATAAA	-19	NA	78313043	78287912	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_78288682_78289116_78289255_78289857_78290020_78290909_78291032_78291301_78291391_78291569_78291789_78293897_78294021_78294139_78294312_78295203_78295404_78295496_78295634_78297635_78297765_78312891
transcript_8828.known	chr11	+	1978	5	FSM	ENSMUSG00000020829.10	ENSMUST00000001126.4	1978	5	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_1	12.7549010188241	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGGGCTTTGGGGCTTTCTG	8337	False	NA	26	True	AGTAAA	-27	NA	78356522	78362771	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78356832_78357176_78358030_78359450_78359535_78361520_78361678_78362196
transcript_8829.known	chr11	+	749	4	FSM	ENSMUSG00000020829.10	ENSMUST00000146431.3	749	4	0	0	0	0	multi-exon	FALSE	canonical	3	25	junction_1	30.8796948747159	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CTAGATACAGAATCTAATCA	8390	False	NA	NA	False	NA	NA	NA	78356575	78362448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78356832_78359450_78359535_78361520_78361678_78362196
transcript_8830.nnic	chr11	-	2211	5	NNC	ENSMUSG00000050132.14	novel	4083	9	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_4	31.0523751104485	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAATGTCTGTCTTCAGTC	4413	False	NA	-2	True	AATACA	-20	NA	78374624	78364116	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_78365859_78366032_78366155_78373982_78374173_78374259_78374363_78374570
transcript_8831.known	chr11	-	2497	4	FSM	ENSMUSG00000050132.14	ENSMUST00000153534.2	2497	4	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_3	7.78888096369861	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGGGCACAAGTCACTACTA	4413	False	NA	76	True	AAGAAA	-19	NA	78374624	78364038	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_78365859_78366032_78366155_78373982_78374173_78374259
transcript_8833.known	chr11	-	1347	6	FSM	ENSMUSG00000051232.14	ENSMUST00000052566.8	1347	6	0	0	0	0	multi-exon	FALSE	canonical	3	479	junction_5	35.6561355169065	433	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTTTATCTTTGGTCTTAAA	1631	False	NA	-29	True	AATAAA	-21	NA	78402998	78397880	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_78398632_78399144_78399258_78399478_78399522_78400550_78400641_78401173_78401248_78402722
transcript_8837.known	chr11	+	2054	11	FSM	ENSMUSG00000001100.11	ENSMUST00000001127.11	2054	11	0	0	0	0	multi-exon	FALSE	canonical	3	1074	junction_9	50.3904752904753	600	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTCTGAGTATTGTTCTTAA	1635	False	NA	18	True	ATTAAA	-15	NA	78403018	78413562	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410132_78411977_78412058_78412619
transcript_8839.known	chr11	+	1329	11	FSM	ENSMUSG00000001100.11	ENSMUST00000133601.2	1329	11	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	351.171240280294	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CACCACGGCCATTTTTGTCT	1858	False	NA	15	True	AATAAA	-17	NA	78403241	78412997	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78403299_78404745_78404828_78405913_78406012_78407644_78407742_78408378_78408455_78408650_78408759_78408898_78409036_78409778_78409806_78410005_78410195_78411977_78412058_78412619
transcript_8846.known	chr11	-	3768	7	FSM	ENSMUSG00000017615.13	ENSMUST00000108277.3	3768	7	0	0	0	0	multi-exon	FALSE	canonical	3	137	junction_6	14.2789666604026	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTCTGTTCCCTCCATG	NA	False	NA	14	True	NA	NA	NA	78427158	78413675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_78416368_78418351_78418548_78419076_78419130_78419215_78419306_78419895_78420066_78420853_78421174_78426911
transcript_8847.known	chr11	-	3720	7	FSM	ENSMUSG00000017615.13	ENSMUST00000017759.9	3720	7	0	0	0	0	multi-exon	FALSE	canonical	3	43	junction_6	46.4997013132582	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTATTTCTGTTCCCTCCATG	NA	False	NA	14	True	NA	NA	NA	78427097	78413675	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_78416368_78418351_78418548_78419076_78419130_78419215_78419306_78419895_78420066_78420853_78421174_78426898
transcript_885.known	chr1	+	1143	7	FSM	ENSMUSG00000025979.14	ENSMUST00000161122.2	1143	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	189.07912805666	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCTCTCTCCTACATAAAGTG	NA	False	NA	NA	False	NA	NA	NA	55170445	55192518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_55170519_55175835_55175899_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
transcript_8852.known	chr11	+	735	6	FSM	ENSMUSG00000001105.16	ENSMUST00000050366.15	735	6	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	183.589760063027	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GAAGCTTTGTGTAAAGTAGA	NA	False	NA	-73	True	NA	NA	NA	78427253	78432202	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78427403_78429335_78429565_78429637_78429789_78430785_78430872_78431720_78431825_78432186
transcript_8853.known	chr11	+	1141	6	FSM	ENSMUSG00000001105.16	ENSMUST00000128788.8	1141	6	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	100.921751867474	150	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGTGCTGTGTGCATTATTT	NA	False	NA	24	True	AATAAA	-33	NA	78427186	78432563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720_78431825_78432186
transcript_8857.known	chr11	+	1167	5	FSM	ENSMUSG00000001105.16	ENSMUST00000137120.8	1167	5	0	0	0	0	multi-exon	FALSE	canonical	3	238	junction_1	109.732344821388	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAGCAC	NA	False	NA	36	True	AATGAA	-43	NA	78427270	78432311	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78427403_78429335_78429565_78429659_78429789_78430785_78430872_78431720
transcript_886.known	chr1	+	1816	7	FSM	ENSMUSG00000025979.14	ENSMUST00000159311.8	1816	7	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	175.833886255055	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTGCAGCCGGGCGGTGGTGG	NA	False	NA	NA	False	NA	NA	NA	55170389	55193097	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_55170519_55184282_55184384_55187477_55187521_55187706_55187794_55189304_55189385_55190129_55190242_55191833
transcript_8860.known	chr11	+	582	5	FSM	ENSMUSG00000001105.16	ENSMUST00000108275.2	582	5	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	91.1125677390337	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAAAAAAAAAAGCACCCCA	NA	False	NA	40	True	NA	NA	NA	78427268	78432315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78427403_78429659_78429789_78430785_78430872_78431720_78431825_78432186
transcript_8864.known	chr11	+	909	4	FSM	ENSMUSG00000001105.16	ENSMUST00000152016.2	909	4	0	0	0	0	multi-exon	FALSE	canonical	3	256	junction_1	104.521130240094	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAAAAAGCA	NA	False	NA	35	True	AATGAA	-42	NA	78427298	78432310	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78427403_78429659_78429789_78430785_78430872_78431720
transcript_8868.known	chr11	-	1375	3	FSM	ENSMUSG00000037278.10	ENSMUST00000103242.5	1375	3	0	0	0	0	multi-exon	TRUE	canonical	3	1037	junction_2	9	867	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGGTTTGTTGTGTGGAT	NA	False	NA	-7	True	AATAAA	-23	NA	78441603	78432642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_78433623_78434311_78434457_78441353
transcript_8869.known	chr11	-	4444	11	FSM	ENSMUSG00000017376.16	ENSMUST00000142739.8	4444	11	0	0	0	0	multi-exon	TRUE	canonical	3	79	junction_6	8.57962703152066	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACGTCGCTGTCTTATTTCC	NA	False	NA	-1	True	ATTAAA	-19	NA	78588199	78457993	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_78459802_78462296_78462391_78463058_78463258_78465666_78465754_78474148_78474251_78477694_78477905_78480130_78480217_78481708_78481816_78509100_78509157_78517402_78517533_78586634
transcript_8870.known	chr11	-	395	1	FSM	ENSMUSG00000082110.2	ENSMUST00000119052.2	395	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	29	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	AATCACATGAAAGACTGAAA	NA	False	NA	NA	False	NA	NA	NA	78476381	78475986	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_78476000_78476400
transcript_8871.known	chr11	-	1224	1	FSM	ENSMUSG00000049489.6	ENSMUST00000059468.6	1224	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	408	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAGAGTCTGCCTTATGGTA	6595	False	NA	-2	True	AATAAA	-37	NA	78642555	78641331	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_78641300_78642600
transcript_8872.known	chr11	+	8035	4	FSM	ENSMUSG00000072640.12	ENSMUST00000147875.9	8035	4	0	0	0	0	multi-exon	FALSE	canonical	3	164	junction_1	44.0782133132559	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTACAGCTGGGTTGTCTC	NA	False	NA	NA	False	NA	NA	NA	78717409	78737696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_78717463_78726843_78726985_78728915_78729009_78729948
transcript_8874.nic	chr11	+	548	4	NIC	ENSMUSG00000072640.12	novel	8035	4	NA	NA	3	0	combination_of_known_junctions	FALSE	canonical	3	6	junction_3	93.9834500797289	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGTGAGGTGGTTCTCGT	NA	False	NA	20	True	AAGAAA	-13	NA	78717412	78730101	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_78717463_78726843_78726985_78728915_78729120_78729948
transcript_8876.known	chr11	-	1586	11	FSM	ENSMUSG00000001123.16	ENSMUST00000108269.10	1586	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_6	7.48398289682706	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ACACATGTGAGATGGCTGGC	NA	False	NA	-2	True	AATAAA	-24	NA	78875750	78853804	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_78854368_78856517_78856681_78856823_78856913_78857702_78857745_78858269_78858321_78858823_78858860_78860539_78860633_78862142_78862254_78863813_78864016_78867438_78867528_78875603
transcript_8878.known	chr11	-	1520	10	FSM	ENSMUSG00000001123.16	ENSMUST00000108268.10	1520	10	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_9	3.82970843102535	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGAGATGGCTGGCTTATT	NA	False	NA	3	True	AATAAA	-29	NA	78875772	78853799	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_78854368_78856517_78856681_78856823_78856913_78857702_78857745_78858269_78858321_78858823_78858860_78862142_78862254_78863813_78864016_78867438_78867528_78875603
transcript_8884.nnic	chr11	-	2365	10	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-41	3	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	150.950895457782	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACATTGCCGATATTTCTTT	934	False	NA	-21	True	ATTAAA	-15	NA	79145538	79130210	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_79130435_79130573_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
transcript_8888.nic	chr11	-	2677	10	NIC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-41	0	combination_of_known_junctions	FALSE	canonical	3	45	junction_4	142.650916403006	65	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTACATTGCCGATATTTC	934	False	NA	-24	True	ATTAAA	-12	NA	79145538	79130213	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79134225_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
transcript_8889.nnic	chr11	-	2665	10	NNC	ENSMUSG00000017677.12	novel	2476	9	NA	NA	-41	0	at_least_one_novel_splicesite	FALSE	canonical	3	38	junction_4	144.381524757699	50	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TACTACATTGCCGATATTTC	934	False	NA	-24	True	ATTAAA	-12	NA	79145538	79130213	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79134237_79134402_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
transcript_889.known	chr1	+	357	3	FSM	ENSMUSG00000025979.14	ENSMUST00000159743.2	357	3	0	0	0	0	multi-exon	FALSE	canonical	3	486	junction_2	17.5	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAGTAGCCCAGGCCTTGATC	NA	False	NA	NA	False	NA	NA	NA	55170484	55184542	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_55170519_55175835_55175899_55184282
transcript_8891.known	chr11	-	2476	9	FSM	ENSMUSG00000017677.12	ENSMUST00000017821.12	2476	9	0	0	0	0	multi-exon	FALSE	canonical	3	217	junction_4	86.5338625914734	199	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTCTTTCATGGGTTGCATT	975	False	NA	-8	True	ATTAAA	-28	NA	79145497	79130197	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_79131289_79131513_79131622_79132420_79132535_79132809_79132983_79135288_79135390_79136995_79137128_79139216_79139486_79141806_79141976_79145178
transcript_8897.known	chr11	-	696	2	FSM	ENSMUSG00000086474.3	ENSMUST00000150312.2	696	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AGGTTGATTTTGGTCTTGGT	1414	False	NA	NA	False	NA	NA	NA	79673713	79672804	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_79673383_79673595
transcript_8899.known	chr11	-	3877	19	FSM	ENSMUSG00000035575.12	ENSMUST00000043152.6	3877	19	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_5	33.8632416611651	82	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTGAGAATGTTAATCTT	NA	False	NA	-14	True	NA	NA	NA	79853216	79824778	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_79826936_79828498_79828572_79831719_79831787_79832703_79832814_79832952_79833034_79834056_79834237_79836604_79836683_79837031_79837112_79839716_79839902_79841595_79841678_79842424_79842507_79844402_79844481_79846436_79846556_79847562_79847627_79848166_79848215_79849611_79849705_79849934_79849977_79851572_79851658_79853043
transcript_89.known	SIRV2	-	740	3	FSM	SIRV2A	SIRV204	740	3	0	0	0	0	multi-exon	FALSE	canonical	3	2423	junction_1	198	379	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTTGTTATCCTATATCGGA	NA	False	NA	NA	False	NA	NA	NA	4732	3643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV2_-_3826_3966_4480_4687
transcript_8906.known	chr11	-	559	4	FSM	ENSMUSG00000035575.12	ENSMUST00000146127.2	559	4	0	0	0	0	multi-exon	FALSE	canonical	3	451	junction_1	32.1074584619974	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTTTTCTTACTCTGTGA	NA	False	NA	NA	False	NA	NA	NA	79853193	79849422	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_79849705_79849934_79849977_79851572_79851658_79853043
transcript_891.nnic	chr1	-	748	5	NNC	ENSMUSG00000025978.15	novel	1870	8	NA	NA	7803	0	at_least_one_novel_splicesite	FALSE	canonical	1	2	junction_4	3.56195171219375	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTTGCTACTACTATCTTC	NA	False	NA	NA	False	ATTAAA	-19	NA	55237845	55210906	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_55211242_55224108_55224188_55233402_55233507_55234674_55234797_55237737
transcript_8910.known	chr11	-	2396	8	FSM	ENSMUSG00000017561.17	ENSMUST00000061283.15	2396	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	192.168081190846	226	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATTTTGTGGTTTTTTGT	4488	False	NA	-3	True	AATAAA	-20	NA	79971817	79937318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_79938564_79939417_79939531_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971609
transcript_8912.known	chr11	-	2230	7	FSM	ENSMUSG00000017561.17	ENSMUST00000103233.10	2230	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	206.037820152838	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTATTTTGTGGTTTTTTGT	4541	False	NA	-3	True	AATAAA	-20	NA	79971764	79937318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_79938564_79947277_79947411_79948617_79948841_79950025_79950204_79950923_79951012_79955017_79955226_79971609
transcript_8919.nnic	chr11	-	1375	4	NNC	ENSMUSG00000046909.10	novel	1309	4	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	2	7	junction_2	123.047416334788	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCCTTCTTTGCTTAA	NA	False	NA	-4	True	AATAAA	-14	NA	80033001	80027503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_80028106_80028743_80028894_80030625_80031150_80032902
transcript_892.known	chr1	-	882	10	FSM	ENSMUSG00000025977.16	ENSMUST00000087585.10	882	10	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_5	6.71831842570265	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTCTGGTTTTCTTCC	NA	False	NA	NA	False	ATTAAA	-19	NA	55402478	55339227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_55339345_55343656_55343786_55344834_55344883_55362808_55362881_55379631_55379760_55385535_55385612_55388039_55388095_55394806_55394899_55399774_55399919_55402457
transcript_8921.known	chr11	-	1309	4	FSM	ENSMUSG00000046909.10	ENSMUST00000050207.10	1309	4	0	0	0	0	multi-exon	FALSE	canonical	3	265	junction_2	2.16024689946929	420	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCCTTCTTTGCTTAA	NA	False	NA	-4	True	AATAAA	-14	NA	80033001	80027503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_80028106_80028743_80028894_80030691_80031150_80032902
transcript_8922.nic	chr11	-	1556	4	NIC	ENSMUSG00000046909.10	novel	1309	4	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	38	junction_3	108.206592528675	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGCCTTCTTTGCTTAA	NA	False	NA	-4	True	AATAAA	-14	NA	80033001	80027503	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_80028106_80028743_80028894_80030691_80031397_80032902
transcript_8933.known	chr11	+	1984	5	FSM	ENSMUSG00000020707.7	ENSMUST00000017839.3	1984	5	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_2	3.96074487943871	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGAGTTCATTGGGT	NA	False	NA	34	True	NA	NA	NA	80074676	80090583	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_80075082_80080049_80080194_80084711_80084875_80087698_80087774_80089386
transcript_8935.nnic	chr11	+	1843	4	NIC	ENSMUSG00000020707.7	novel	1984	5	NA	NA	-3	0	combination_of_known_splicesites	FALSE	canonical	3	23	junction_1	17.6131264181639	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGAGTTCATTGGGT	NA	False	NA	34	True	NA	NA	NA	80074673	80090583	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_80075082_80084711_80084875_80087698_80087774_80089386
transcript_8936.nnic	chr11	+	1713	3	NIC	ENSMUSG00000020707.7	novel	1984	5	NA	NA	-36	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	29.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTGTTGAGTTCATTGGGT	NA	False	NA	34	True	NA	NA	NA	80074640	80090583	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_80075082_80087698_80087774_80089386
transcript_8937.known	chr11	+	333	3	FSM	ENSMUSG00000020707.7	ENSMUST00000134909.2	333	3	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	28	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AATAAATAAATAAATCTTTA	NA	False	NA	NA	False	NA	NA	NA	80075048	80080837	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_80075082_80080049_80080194_80080681
transcript_8938.known	chr11	+	3297	21	FSM	ENSMUSG00000017686.18	ENSMUST00000077451.14	3297	21	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_19	176.261425161605	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCTTGAGGTTTTTTGTCTTC	NA	False	NA	9	True	AATAAA	-20	NA	80099844	80157638	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80146687_80146784_80148339_80148463_80156567
transcript_8940.known	chr11	+	3029	20	FSM	ENSMUSG00000017686.18	ENSMUST00000017831.16	3029	20	0	0	0	0	multi-exon	FALSE	canonical	3	150	junction_18	134.011803341732	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTGACCTTTTCAAGTATTTA	NA	False	NA	34	True	AATAAA	-45	NA	80099944	80157593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80146687_80146784_80156567
transcript_8941.known	chr11	+	4260	20	FSM	ENSMUSG00000017686.18	ENSMUST00000055056.16	4260	20	0	0	0	0	multi-exon	FALSE	canonical	3	75	junction_18	152.933077899418	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AAATGCCACTGTGCCTGGCT	NA	False	NA	NA	False	NA	NA	NA	80099880	80158733	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80148339_80148463_80156567
transcript_8943.known	chr11	+	3687	19	FSM	ENSMUSG00000017686.18	ENSMUST00000092857.13	3687	19	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_18	65.0695971182841	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATACACTTTTCAAAGACAAC	NA	False	NA	NA	False	AATAAA	-13	NA	80099909	80158312	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_80100150_80111083_80111143_80114728_80114811_80116411_80116456_80116888_80116943_80118105_80118159_80124207_80124317_80124754_80124857_80132846_80132946_80133398_80133508_80134195_80134317_80136827_80136913_80137492_80137639_80139263_80139365_80141033_80141165_80141868_80141953_80143792_80143913_80145485_80145689_80156567
transcript_8947.known	chr11	-	4554	10	FSM	ENSMUSG00000057181.16	ENSMUST00000103225.11	4554	10	0	0	0	0	multi-exon	FALSE	canonical	2	53	junction_6	17.0105268787113	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATTAAAGGCTTAAATAGTGT	NA	False	NA	NA	False	TTTAAA	-3	NA	80268860	80251318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_80254845_80255661_80255766_80258887_80259025_80259353_80259419_80261156_80261277_80264465_80264524_80264899_80265044_80266332_80266459_80267628_80267710_80268667
transcript_8955.known	chr11	+	1562	12	FSM	ENSMUSG00000017421.19	ENSMUST00000053740.15	1562	12	0	0	0	0	multi-exon	FALSE	canonical	3	261	junction_9	283.951136525079	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CTAATAGGTTTGGAGATTAA	NA	False	NA	NA	False	NA	NA	NA	80274222	80286392	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
transcript_8960.nnic	chr11	+	2148	11	NNC	ENSMUSG00000017421.19	novel	2245	11	NA	NA	3	-103	intron_retention	FALSE	canonical	3	172	junction_7	258.380823591845	27	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTATGCCTTTTTATTCATA	NA	False	NA	24	True	AATAAA	-13	NA	80274107	80286968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282216_80282660_80282819_80285111_80285358_80285927_80286088_80286215
transcript_8963.known	chr11	+	2245	11	FSM	ENSMUSG00000017421.19	ENSMUST00000017567.14	2245	11	0	0	0	0	multi-exon	FALSE	canonical	3	695	junction_8	108.208317610062	115	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTTGATACATGATTGAAT	NA	False	NA	130	True	AATAAA	-18	NA	80274128	80287074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80280599_80280648_80282156_80282228_80282660_80282819_80285111_80285358_80285927_80286088_80286215
transcript_8968.known	chr11	+	2311	11	FSM	ENSMUSG00000017421.19	ENSMUST00000165565.8	2311	11	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_5	381.677992553933	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACAGTTTTGATACATGATTG	NA	False	NA	127	True	AATAAA	-15	NA	80274104	80287071	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_80274322_80276728_80276856_80278627_80278767_80279803_80279972_80280080_80280157_80282156_80282228_80282660_80282819_80283909_80284003_80285111_80285358_80285927_80286088_80286215
transcript_897.known	chr1	-	1106	10	FSM	ENSMUSG00000025977.16	ENSMUST00000114423.7	1106	10	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	9.78787357579789	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTTTTCTGGTTTTCTTCC	NA	False	NA	NA	False	ATTAAA	-19	NA	55401885	55339227	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_55339345_55343656_55343786_55344834_55344883_55362808_55362881_55379631_55379760_55385535_55385612_55388039_55388095_55394806_55394899_55399774_55399919_55401640
transcript_8980.known	chr11	+	2848	14	FSM	ENSMUSG00000017428.17	ENSMUST00000017572.14	2848	14	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_5	68.6804624122448	774	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GGTGTCCTTTCTTGAGTGCT	NA	False	NA	16	True	AATAAA	-20	NA	80319450	80364074	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277_80362421_80362535
transcript_8983.known	chr11	+	1626	13	FSM	ENSMUSG00000017428.17	ENSMUST00000173938.8	1626	13	0	0	0	0	multi-exon	FALSE	canonical	3	918	junction_5	64.9491253897148	193	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAGAAAAAGAAAA	NA	False	NA	-44	True	NA	NA	NA	80319448	80362735	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_80319582_80322530_80322633_80329076_80329202_80336067_80336140_80336739_80336798_80347065_80347261_80351421_80351567_80353436_80353498_80355839_80355903_80360627_80360754_80361208_80361245_80361451_80361504_80362277
transcript_899.known	chr1	-	2052	4	FSM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	26.1576417557513	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGTCAAAATAGATTCTGTTA	NA	False	NA	NA	False	AATAAA	-19	NA	57416703	57398380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_57399823_57401724_57401923_57414406_57414679_57416563
transcript_8992.known	chr11	+	1633	7	FSM	ENSMUSG00000035413.9	ENSMUST00000040865.9	1633	7	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	3.67045259092421	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTGTGTAGTTACCGAGTCAA	NA	False	NA	5	True	AGTAAA	-23	NA	80701000	80712859	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_80701286_80703331_80703516_80705044_80705177_80706491_80706526_80708328_80708445_80710755_80710816_80712037
transcript_8994.nic	chr11	-	721	5	ISM	ENSMUSG00000020698.12	ENSMUST00000021040.10	1787	14	18	34338	18	-34338	5prime_fragment	FALSE	canonical	2	8	junction_4	0.82915619758885	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCACGTGACTCTGTATGTGT	NA	False	NA	NA	False	ATTAAA	-20	NA	82655114	82644413	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_82644564_82645787_82645962_82651175_82651311_82653013_82653078_82654916
transcript_8995.known	chr11	+	1591	1	FSM	ENSMUSG00000046010.8	ENSMUST00000056677.8	1591	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	58	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGGATGGGTATTCTTTTTT	NA	False	NA	NA	False	CATAAA	-21	NA	82655170	82656761	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_82655200_82656800
transcript_8996.known	chr11	-	686	3	FSM	ENSMUSG00000085175.8	ENSMUST00000152784.8	686	3	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_1	9	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGAAGTTCATTATGTCTTTG	NA	False	NA	4	True	AATAAA	-22	NA	82671868	82670426	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_82670762_82670960_82671125_82671681
transcript_8998.known	chr11	-	655	2	FSM	ENSMUSG00000085175.8	ENSMUST00000136051.2	655	2	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_1	0	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGGCTTTCTCTTCTTAGACC	NA	False	NA	NA	False	NA	NA	NA	82671868	82670656	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_82671125_82671681
transcript_9.known	ERCC-00031	+	1122	1	FSM	ERCC-00031A	DQ459431	1122	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0		NA	False	NA	NA	False	NA	NA	NA	0	1122	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_ERCC-00031_+_0_1100
transcript_9000.known	chr11	+	1785	7	FSM	ENSMUSG00000020697.17	ENSMUST00000173009.8	1785	7	0	0	0	0	multi-exon	FALSE	canonical	3	118	junction_3	26.4601377337475	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATAACTATTTGTGGCTCCAT	NA	False	NA	NA	False	NA	NA	NA	82672023	82681130	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_82672103_82674171_82674726_82676140_82676285_82678453_82678655_82679589_82679742_82680372_82680540_82680642
transcript_9001.known	chr11	-	3489	7	FSM	ENSMUSG00000020696.19	ENSMUST00000108173.10	3489	7	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_4	36.5942466637706	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGATGCCTGTCCCATCTGGT	2743	False	NA	NA	False	AATAAA	-11	NA	82762036	82694647	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_82697016_82699338_82699363_82700833_82701045_82701853_82701938_82703225_82703637_82709241_82709430_82761833
transcript_9006.known	chr11	+	3636	20	FSM	ENSMUSG00000020697.17	ENSMUST00000173727.8	3636	20	0	0	0	0	multi-exon	FALSE	canonical	3	52	junction_3	31.7035261983143	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTGTATGTGGCAAGACCTT	NA	False	NA	21	True	TTTAAA	-17	NA	82672018	82692852	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_82672103_82674171_82674726_82676140_82676285_82678456_82678655_82679589_82679742_82680372_82680540_82680642_82680721_82681298_82681468_82682862_82683019_82684699_82684832_82685329_82685410_82686190_82686279_82686534_82686613_82686853_82686978_82688131_82688275_82688599_82688675_82689081_82689229_82690247_82690447_82691001_82691124_82692106
transcript_9007.known	chr11	-	3426	10	FSM	ENSMUSG00000018841.18	ENSMUST00000018985.15	3426	10	0	0	0	0	multi-exon	TRUE	canonical	3	107	junction_4	12.9099444873581	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGGCCTAGGGGTGCTAGGA	NA	False	NA	NA	False	NA	NA	NA	82781440	82767524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_82769850_82770010_82770179_82772426_82772498_82772596_82772688_82773712_82773809_82774318_82774454_82774708_82774791_82780517_82780637_82780795_82780858_82781163
transcript_901.nic	chr1	-	1011	3	ISM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	-25	2968	-25	-2968	5prime_fragment	FALSE	canonical	3	59	junction_2	8.5	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GATTATGGCTACACAATGCT	NA	False	NA	NA	False	NA	NA	NA	57416728	57401348	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_57401923_57414406_57414679_57416563
transcript_9012.nic	chr11	-	1701	13	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	18	0	combination_of_known_junctions	FALSE	canonical	3	35	junction_4	66.8112494686004	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCAGCTTCTTGTTCTA	8321	False	NA	-6	True	AATAAA	-22	NA	82799219	82791593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82793960_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
transcript_9015.known	chr11	-	1783	13	FSM	ENSMUSG00000020692.15	ENSMUST00000103213.10	1783	13	0	0	0	0	multi-exon	FALSE	canonical	3	193	junction_4	34.6180548590215	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCAGCTTCTTGTTCTA	8303	False	NA	-6	True	AATAAA	-22	NA	82799237	82791593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_82791877_82792382_82792454_82792534_82792695_82793820_82794024_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
transcript_9017.nic	chr11	-	1774	12	NIC	ENSMUSG00000020692.15	novel	1783	13	NA	NA	26	0	intron_retention	TRUE	canonical	3	35	junction_3	68.7710298414568	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTTGCAGCTTCTTGTTCTA	8329	False	NA	-6	True	AATAAA	-22	NA	82799211	82791593	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_82791877_82792382_82792695_82793820_82793960_82794915_82794963_82795065_82795202_82795617_82795811_82796103_82796202_82796332_82796410_82797250_82797331_82798378_82798597_82798917_82799062_82799164
transcript_902.nic	chr1	-	729	3	ISM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	-25	3250	-25	-3250	5prime_fragment	FALSE	canonical	3	59	junction_2	8.5	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCATGAGTTTGCTATCTGGC	NA	False	NA	NA	False	NA	NA	NA	57416728	57401630	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_57401923_57414406_57414679_57416563
transcript_9027.known	chr11	-	498	1	FSM	ENSMUSG00000082419.4	ENSMUST00000119608.2	498	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	57	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	55	GAAGCAACAAGAAAATATTT	NA	False	NA	NA	False	NA	NA	NA	82918823	82918325	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_82918300_82918800
transcript_9028.known	chr11	+	1816	3	FSM	ENSMUSG00000018986.11	ENSMUST00000019130.8	1816	3	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	4.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GTATGGCACAATGATGTTTC	3794	False	NA	NA	False	CATAAA	-14	NA	83082155	83105980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_83082235_83103369_83104440_83105313
transcript_9029.known	chr11	+	1428	4	FSM	ENSMUSG00000087107.9	ENSMUST00000143673.2	1428	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	6.23609564462324	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GACATGTATGTATGTATGTA	NA	False	NA	NA	False	NA	NA	NA	83114401	83117430	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_83114478_83115035_83115137_83115277_83115458_83116359
transcript_903.nic	chr1	-	603	3	ISM	ENSMUSG00000097519.3	ENSMUST00000181949.3	2052	4	-25	3376	-25	-3376	5prime_fragment	FALSE	canonical	3	59	junction_2	8.5	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTCTGATGCTTTTGAAGAC	NA	False	NA	NA	False	NA	NA	NA	57416728	57401756	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr1_-_57401923_57414406_57414679_57416563
transcript_9030.known	chr11	+	191	1	FSM	ENSMUSG00000119838.1	ENSMUST00000084010.3	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGGGGGTTTCTATTACTGGT	NA	False	NA	NA	False	NA	NA	NA	83162323	83162514	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_83162300_83162500
transcript_9031.known	chr11	+	356	3	FSM	ENSMUSG00000093483.2	ENSMUST00000176545.2	356	3	0	0	0	0	multi-exon	FALSE	canonical	3	49	junction_1	166	178	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGTATTTGTTTGGGTAAGA	5869	False	NA	10	True	ATTAAA	-19	NA	83182545	83185458	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_83182660_83182799_83182924_83185340
transcript_9032.known	chr11	+	471	2	FSM	ENSMUSG00000093483.2	ENSMUST00000176016.2	471	2	0	0	0	0	multi-exon	FALSE	canonical	3	381	junction_1	0	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTATTTGTTTGGGTAA	5892	False	NA	8	True	ATTAAA	-17	NA	83182568	83185456	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_83182924_83185340
transcript_9033.known	chr11	+	5625	22	FSM	ENSMUSG00000035152.15	ENSMUST00000018875.13	5625	22	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_14	47.3312733095844	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGTTTGTGGTATGGACT	1959	False	NA	NA	False	AATAAA	-16	NA	83193308	83295861	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_83193664_83199040_83199101_83207245_83207352_83212764_83212901_83215336_83215583_83223811_83224003_83226206_83226429_83227167_83227289_83227591_83227688_83230138_83230255_83232099_83232266_83233425_83233525_83237473_83237734_83241804_83241998_83255620_83255663_83256472_83256620_83258708_83258855_83260478_83260609_83280528_83280614_83281520_83281608_83288580_83288736_83293395
transcript_9034.known	chr11	+	3269	21	FSM	ENSMUSG00000035152.15	ENSMUST00000065692.14	3269	21	0	0	0	0	multi-exon	FALSE	canonical	3	171	junction_14	24.9631728752577	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAACATAAACTGCACCTTAT	2250	False	NA	NA	False	ATTAAA	-20	NA	83193599	83293838	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_83193664_83199040_83199101_83207245_83207352_83212764_83212901_83215336_83215583_83223811_83224003_83226206_83226429_83227167_83227289_83227591_83227688_83230138_83230255_83232099_83232266_83233425_83233525_83237473_83237734_83241804_83241998_83256472_83256620_83258708_83258855_83260478_83260609_83280528_83280614_83281520_83281608_83288580_83288736_83293395
transcript_9037.known	chr11	-	2389	4	FSM	ENSMUSG00000018733.11	ENSMUST00000108146.8	2389	4	0	0	0	0	multi-exon	FALSE	canonical	3	23	junction_3	16.4991582276861	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCATTGACTTCTTGAAGTTT	2426	False	NA	-7	True	AATAAA	-16	NA	83189768	83185900	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_83187267_83188313_83188868_83189141_83189380_83189537
transcript_9038.known	chr11	-	2729	4	FSM	ENSMUSG00000018733.11	ENSMUST00000018877.9	2729	4	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_3	22.7596133534821	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	CAAATACCATGGTTAATTAA	2391	False	NA	NA	False	AATAAA	-14	NA	83189803	83185467	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_83187267_83188313_83188868_83189141_83189380_83189665
transcript_904.known	chr1	+	3008	2	FSM	ENSMUSG00000038323.4	ENSMUST00000042734.3	3008	2	0	0	0	0	multi-exon	FALSE	canonical	3	44	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTATTTGGATGTGTTTAT	NA	False	NA	8	True	ATTAAA	-19	NA	57416778	57424582	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_57417106_57421901
transcript_9048.nnic	chr11	+	2051	17	NNC	ENSMUSG00000020680.16	novel	2068	16	NA	NA	-2	0	at_least_one_novel_splicesite	TRUE	canonical	0	0	junction_15	27.3723600325219	72	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGAGTGCATTATTTGTC	8652	False	NA	41	True	AATAAA	-21	NA	83363909	83397569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750_83379872_83388087_83388123_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395558_83395582_83395931_83397243
transcript_9051.known	chr11	+	2068	16	FSM	ENSMUSG00000020680.16	ENSMUST00000021018.11	2068	16	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	25.2651714597168	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATTGAGTGCATTATTTGTC	8660	False	NA	41	True	AATAAA	-21	NA	83363917	83397569	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750_83379872_83388087_83388123_83388719_83388753_83389898_83390009_83391940_83392071_83393585_83393679_83395071_83395154_83395253_83395343_83395467_83395931_83397243
transcript_9059.known	chr11	+	881	7	FSM	ENSMUSG00000020680.16	ENSMUST00000134185.8	881	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_5	8.74960316560446	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	65	AAAATTGTAAAAAAAAAGGC	8654	False	NA	NA	False	CATAAA	-34	NA	83363911	83380039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_83364033_83372759_83372800_83375476_83375529_83375635_83375721_83375802_83375906_83378048_83378240_83379750
transcript_906.known	chr1	-	766	9	FSM	ENSMUSG00000048495.17	ENSMUST00000160837.8	766	9	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_4	49.931828526502	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAACAGATACCTATGGCAAC	NA	False	NA	NA	False	NA	NA	NA	57445602	57427824	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57432828_57432854_57433205_57433251_57435885_57435956_57440546_57440683_57445542
transcript_9060.nnic	chr11	-	1216	5	NNC	ENSMUSG00000019122.9	novel	3006	4	NA	NA	-3699	658	at_least_one_novel_splicesite	FALSE	canonical	2	11	junction_4	25.1445819213603	12	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTCTGTCTGCCTCTTTT	NA	False	NA	-1	True	AATAAA	-18	NA	83473161	83465485	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_83466322_83466668_83466778_83467200_83467273_83469214_83469351_83473098
transcript_9061.nnic	chr11	-	1080	4	NNC	ENSMUSG00000019122.9	novel	3006	4	NA	NA	-3699	658	at_least_one_novel_splicesite	FALSE	canonical	3	44	junction_3	12.9614813968157	42	NA	NA	TRUE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CAGGTCTGTCTGCCTCTTTT	NA	False	NA	-1	True	AATAAA	-18	NA	83473161	83465485	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_83466322_83466668_83466778_83467200_83467273_83473098
transcript_9062.known	chr11	-	766	3	FSM	ENSMUSG00000000982.6	ENSMUST00000001008.6	766	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGGTGTTGAGTTTTATTT	NA	False	NA	NA	False	AATAAA	-19	NA	83540181	83538669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_83539170_83539394_83539507_83540027
transcript_9063.known	chr11	+	5614	20	FSM	ENSMUSG00000000976.14	ENSMUST00000001002.8	5614	20	0	0	0	0	multi-exon	TRUE	canonical	3	50	junction_5	6.60059596066985	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CCGTTGGTTTCTGGGTCTCT	4017	False	NA	11	True	AATAAA	-20	NA	83644521	83674580	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_83644768_83646535_83646644_83648135_83648277_83649114_83649231_83650129_83650245_83651724_83651827_83655711_83655850_83656678_83656987_83657903_83658082_83659881_83660089_83660493_83660594_83663070_83663427_83664695_83664819_83665247_83665335_83666526_83666662_83667439_83667563_83668063_83668189_83669670_83669768_83670226_83670432_83671976
transcript_9066.known	chr11	+	3194	15	FSM	ENSMUSG00000020677.8	ENSMUST00000049257.8	3194	15	0	0	0	0	multi-exon	FALSE	canonical	3	267	junction_7	30.0713437392763	65	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTTTGTAATTGTTTTGTTCT	NA	False	NA	NA	False	AATAAA	-26	NA	83832887	83853914	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_83833091_83834068_83834268_83835361_83835496_83836930_83837117_83839270_83839415_83840408_83840521_83842115_83842189_83842937_83843142_83844052_83844144_83845906_83846030_83846114_83846266_83846797_83846874_83848291_83848364_83850272_83850360_83852575
transcript_907.known	chr1	-	1847	8	FSM	ENSMUSG00000048495.17	ENSMUST00000162686.8	1847	8	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	29.7341966257639	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGGTGGAGTGGCCGTCT	NA	False	NA	-15	True	AATAAA	-30	NA	57446260	57427395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57433205_57433251_57435885_57435956_57440527_57440683_57445542
transcript_9074.known	chr11	-	1447	3	FSM	ENSMUSG00000018648.16	ENSMUST00000100705.11	1447	3	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_2	13.5	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTTATTAATCATTTTG	NA	False	NA	-14	True	AATAAA	-15	NA	83959183	83938866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_83940137_83941657_83941747_83959095
transcript_9075.known	chr11	-	1571	4	FSM	ENSMUSG00000018648.16	ENSMUST00000018792.12	1571	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_3	40.077702307171	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCCTTTATTAATCATTTTG	NA	False	NA	-14	True	AATAAA	-15	NA	83959627	83938866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_83940137_83941657_83941747_83959306_83959407_83959515
transcript_908.known	chr1	-	1398	8	FSM	ENSMUSG00000048495.17	ENSMUST00000079998.13	1398	8	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_6	15.7025930524684	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTATTGGTGGAGTGGCCG	NA	False	NA	-18	True	AATAAA	-43	NA	57445833	57427398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57432647_57433205_57433251_57435885_57435956_57440546_57440683_57445542
transcript_9081.known	chr11	-	2151	16	FSM	ENSMUSG00000018651.15	ENSMUST00000018795.13	2151	16	0	0	0	0	multi-exon	FALSE	canonical	3	409	junction_10	48.5691259958423	316	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGTGGGTGTGTCAGATAT	NA	False	NA	-4	True	ATTAAA	-17	NA	84020426	83969745	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_83970604_83972863_83972938_83975539_83975584_83976464_83976598_83977936_83978009_83981374_83981486_83982801_83982846_83984409_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813_84017922_84020362
transcript_9095.nic	chr11	-	853	9	ISM	ENSMUSG00000018651.15	ENSMUST00000018795.13	2151	16	-48	14674	-48	-8163	5prime_fragment	FALSE	canonical	3	409	junction_3	60.9045103009621	38	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAGAAAAAAGTAAGTGTGG	NA	False	NA	5	True	NA	NA	NA	84020474	83984419	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_83984474_83993878_83993952_83995017_83995107_83997014_83997173_84000779_84000872_84009073_84009134_84011907_84012015_84017813_84017922_84020362
transcript_91.known	SIRV3	+	1083	8	FSM	SIRV3A	SIRV304	1083	8	0	0	0	0	multi-exon	FALSE	canonical	3	1134	junction_6	907.203057620014	522	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTAGGTTAACGTCTCGTAAG	NA	False	NA	NA	False	NA	NA	NA	1963	8937	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV3_+_2006_4003_4081_4568_4780_6057_6334_7270_7367_7872_7989_8124_8208_8755
transcript_910.known	chr1	-	1754	7	FSM	ENSMUSG00000048495.17	ENSMUST00000097732.11	1754	7	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_5	15.6178316890235	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTCTATTGGTGGAGTGGCCG	NA	False	NA	-18	True	AATAAA	-43	NA	57445630	57427398	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_57427912_57429800_57429918_57430607_57430696_57432508_57433251_57435885_57435956_57440546_57440683_57445542
transcript_9102.known	chr11	-	1822	13	FSM	ENSMUSG00000018697.15	ENSMUST00000018841.3	1822	13	0	0	0	0	multi-exon	TRUE	canonical	3	481	junction_8	26.3136793744665	197	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCACTGTCTTCACTGTGAGT	NA	False	NA	0	True	AATAAA	-44	NA	84404348	84313680	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_84313846_84333391_84333464_84336452_84336534_84339945_84340014_84358286_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84400484_84400623_84401024_84401244_84402308_84402405_84402966_84403156_84404117
transcript_9104.known	chr11	-	1992	9	FSM	ENSMUSG00000018697.15	ENSMUST00000148434.2	1992	9	0	0	0	0	multi-exon	FALSE	canonical	3	481	junction_4	26.8348537353942	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	100	AAAAAAAAAAAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	84404348	84357730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_84358371_84361389_84361555_84361913_84362113_84363877_84363993_84400484_84400623_84401024_84401244_84402308_84402405_84402966_84403156_84404117
transcript_9105.known	chr11	-	2477	5	FSM	ENSMUSG00000018405.8	ENSMUST00000018549.8	2477	5	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	44.51404272811	27	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTCCCTGGAGTTGATTTGT	NA	False	NA	-4	True	AATAAA	-23	NA	84710341	84703886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_84705338_84705514_84705635_84705733_84705867_84709425_84709520_84709662
transcript_9106.known	chr11	-	1254	7	FSM	ENSMUSG00000034449.8	ENSMUST00000047560.8	1254	7	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_6	7.19760762722973	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTCCCCCCCCCCCAGCTCT	NA	False	NA	NA	False	NA	NA	NA	84719790	84711681	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_84712128_84712228_84712295_84712490_84712584_84713136_84713267_84713897_84713993_84716193_84716404_84719576
transcript_911.known	chr1	+	3540	5	FSM	ENSMUSG00000025971.7	ENSMUST00000027114.6	3540	5	0	0	0	0	multi-exon	FALSE	canonical	3	301	junction_4	18.5926732881531	305	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTCTTTGGGTCATGGTGTTC	NA	False	NA	NA	False	NA	NA	NA	57445486	57457112	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_57446382_57449070_57449143_57450881_57451009_57452398_57452547_57454814
transcript_9111.known	chr11	-	998	5	FSM	ENSMUSG00000020526.13	ENSMUST00000103195.5	998	5	0	0	0	0	multi-exon	FALSE	canonical	3	360	junction_2	22.0609949911603	100	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTATTGTTCCCTTAGTAAAC	NA	False	NA	69	True	AATAAA	-16	NA	84807192	84801775	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_84802475_84804047_84804129_84805036_84805112_84806924_84806957_84807081
transcript_9112.known	chr11	-	1728	2	FSM	ENSMUSG00000045140.9	ENSMUST00000108080.3	1728	2	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAAGGAAGATTCATGGAT	NA	False	NA	NA	False	ATTAAA	-12	NA	84771111	84767668	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_84769339_84771053
transcript_9113.known	chr11	-	6463	13	FSM	ENSMUSG00000018481.10	ENSMUST00000018625.10	6463	13	0	0	0	0	multi-exon	TRUE	canonical	3	360	junction_12	22.6180544894756	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCTTCCGATTGAATTGTGA	NA	False	NA	0	True	AATAAA	-25	NA	85125956	85078087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_85082726_85085400_85085567_85086891_85087083_85088891_85088978_85091119_85091245_85092241_85092348_85092428_85092497_85095059_85095150_85100765_85100935_85105061_85105186_85105935_85106088_85107261_85107351_85125497
transcript_9117.known	chr11	-	6931	20	FSM	ENSMUSG00000034329.17	ENSMUST00000044423.4	6931	20	0	0	0	0	multi-exon	FALSE	canonical	3	63	junction_1	12.1006856333757	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	TGAAAAAGGTCCGATGACTT	NA	False	NA	NA	False	AATAAA	-14	NA	86092019	85948963	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_85952872_85955603_85955928_85965104_85965188_85968682_85968796_85999592_85999715_86001168_86001329_86026084_86026247_86029588_86029730_86029839_86030006_86034082_86034238_86036887_86037021_86039183_86039384_86043413_86043636_86048413_86048705_86077790_86077920_86080557_86080686_86083640_86083815_86088694_86088807_86089697_86089821_86091934
transcript_9127.known	chr11	-	5531	15	FSM	ENSMUSG00000020516.16	ENSMUST00000154617.8	5531	15	0	0	0	0	multi-exon	FALSE	canonical	3	211	junction_9	22.8179351227342	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GATAACAGTTATAAAACTTT	NA	False	NA	NA	False	AATAAA	-17	NA	86435631	86389696	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_86393789_86395091_86395205_86397616_86397725_86402414_86402493_86402650_86402714_86403631_86403740_86404125_86404217_86404372_86404464_86406916_86407018_86408408_86408467_86410717_86410866_86423597_86423667_86424851_86424973_86426236_86426287_86435391
transcript_913.known	chr1	-	708	5	FSM	ENSMUSG00000048495.17	ENSMUST00000161780.3	708	5	0	0	0	0	multi-exon	FALSE	canonical	3	102	junction_3	19.6468827043885	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGAGCAAAGCCTAGCTTCTT	NA	False	NA	NA	False	NA	NA	NA	57445696	57432343	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_57432647_57433205_57433251_57435885_57435956_57440546_57440683_57445542
transcript_9135.known	chr11	+	4452	9	FSM	ENSMUSG00000020521.8	ENSMUST00000020827.7	4452	9	0	0	0	0	multi-exon	TRUE	canonical	3	265	junction_2	21.9146070008111	209	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTTGCATTTAATTTCTATTT	NA	False	NA	NA	False	AATAAA	-30	NA	86375482	86389851	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_86375626_86376886_86377332_86377481_86377559_86379892_86379994_86381183_86381338_86382504_86382664_86383986_86384053_86386053_86386156_86386646
transcript_9140.known	chr11	+	1871	9	FSM	ENSMUSG00000020513.16	ENSMUST00000069503.13	1871	9	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_1	8.83087623059003	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GGTTCAGTCTGTTAAGTAAT	NA	False	NA	NA	False	AATAAA	-19	NA	86435816	86458186	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_86436057_86439608_86439829_86440149_86440298_86443613_86443831_86445898_86446131_86448550_86448716_86452061_86452203_86456510_86456695_86457862
transcript_9141.known	chr11	-	2787	12	FSM	ENSMUSG00000018171.10	ENSMUST00000018315.10	2787	12	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_5	55.9317766244166	450	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCTTGCCTCATGGATTTTG	9872	False	NA	NA	False	AATAAA	-16	NA	86574662	86474690	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498119_86502167_86502249_86526000_86526133_86534323_86534492_86551948_86552060_86554308_86554400_86555479_86555616_86556602_86556705_86574565
transcript_9150.nnic	chr11	-	1182	6	NNC	ENSMUSG00000018171.10	novel	2787	12	NA	NA	-19012	237	at_least_one_novel_splicesite	FALSE	canonical	3	66	junction_5	277.055517902098	76	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTGTGTCCGTTTTCTTTAGT	NA	False	NA	0	True	TATAAA	-23	NA	86512133	86475518	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_86476278_86477321_86477425_86492833_86492896_86498001_86498119_86502167_86502249_86512073
transcript_9152.known	chr11	-	599	1	FSM	ENSMUSG00000083992.2	ENSMUST00000117851.2	599	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	617	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACCCAATAAAGACTGTTTGC	NA	False	NA	NA	False	NA	NA	NA	86521852	86521253	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_86521300_86521900
transcript_9153.known	chr11	+	3038	2	FSM	ENSMUSG00000072582.10	ENSMUST00000108022.8	3038	2	0	0	0	0	multi-exon	FALSE	canonical	3	249	junction_1	0	321	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACGTTTGGTGTCTGATTCAT	NA	False	NA	NA	False	NA	NA	NA	86574810	86583283	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_86574950_86580384
transcript_9154.known	chr11	-	6519	32	FSM	ENSMUSG00000047126.18	ENSMUST00000103186.11	6519	32	0	0	0	0	multi-exon	TRUE	canonical	3	813	junction_25	122.673691341487	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATCATGGTATTTCTTTTCAA	NA	False	NA	0	True	AATAAA	-18	NA	86648391	86585176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_86586517_86588090_86588167_86593034_86593257_86593426_86593598_86594489_86594601_86594696_86594829_86594905_86595056_86595465_86595634_86595713_86595822_86595971_86596137_86596798_86596957_86597492_86597686_86597877_86598062_86598295_86598442_86599775_86599899_86602166_86602402_86602672_86602816_86603406_86603533_86608723_86608888_86610011_86610193_86610284_86610450_86611075_86611214_86612400_86612524_86613000_86613154_86615896_86616098_86617080_86617279_86621036_86621211_86621543_86621658_86623330_86623493_86624401_86624671_86627896_86628105_86648073
transcript_9155.known	chr11	-	3813	18	FSM	ENSMUSG00000018425.19	ENSMUST00000018569.14	3813	18	0	0	0	0	multi-exon	FALSE	canonical	3	128	junction_4	18.4312056730034	43	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAGACAGTATGTGGATTTTT	8527	False	NA	-8	True	ATTAAA	-7	NA	86698572	86659671	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_86661088_86661855_86662085_86662719_86662790_86664629_86664725_86666485_86666595_86667440_86667556_86675704_86675863_86676582_86676664_86679992_86680176_86680311_86680399_86683987_86684088_86688448_86688581_86689747_86689815_86690245_86690474_86691794_86691915_86695082_86695229_86697285_86697454_86698263
transcript_9158.known	chr11	-	4847	5	FSM	ENSMUSG00000018427.9	ENSMUST00000018571.5	4847	5	0	0	0	0	multi-exon	FALSE	canonical	3	55	junction_1	6.94172168845741	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTTGGGAGAATGTCTGTT	NA	False	NA	-8	True	AATAAA	-16	NA	86884533	86827250	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_86831515_86835398_86835508_86836758_86836803_86862634_86862949_86884417
transcript_9159.known	chr11	-	2336	10	FSM	ENSMUSG00000061666.7	ENSMUST00000020804.8	2336	10	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_6	8.73053390247253	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGCTTGTGATTCCAGTGTGT	NA	False	NA	-8	True	AATAAA	-39	NA	86964888	86924692	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_86926122_86926417_86926470_86928656_86928717_86932613_86932748_86935952_86936043_86936581_86936701_86947617_86947664_86950250_86950387_86954724_86954768_86964661
transcript_9161.known	chr11	-	3218	4	FSM	ENSMUSG00000020495.14	ENSMUST00000020801.14	3218	4	0	0	0	0	multi-exon	FALSE	canonical	3	76	junction_2	5.65685424949238	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TACTTGGTATCTGTTTTGTC	NA	False	NA	1	True	AATAAA	-35	NA	86977600	86968557	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_86968977_86970991_86971865_86974425_86974572_86975820
transcript_9162.known	chr11	+	3037	4	FSM	ENSMUSG00000020492.12	ENSMUST00000020794.6	3037	4	0	0	0	0	multi-exon	FALSE	canonical	3	189	junction_1	6.12825877028341	82	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCTAGCCTCCATGTTATATT	NA	False	NA	13	True	AATAAA	-21	NA	87000059	87015461	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_87000131_87006929_87007017_87008493_87008671_87012759
transcript_9167.nnic	chr11	+	3565	25	NNC	ENSMUSG00000018548.16	novel	5632	24	NA	NA	-5	30188	at_least_one_novel_splicesite	TRUE	canonical	3	225	junction_24	67.5794671109502	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTATGTTTTGTCATAATTTG	1911	False	NA	5	True	NA	NA	NA	87017897	87141697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075709_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87092143_87092453_87096758_87096882_87097589_87097780_87100594_87100714_87107262_87107374_87109077_87109157_87141416
transcript_9168.known	chr11	+	5632	24	FSM	ENSMUSG00000018548.16	ENSMUST00000041282.13	5632	24	0	0	0	0	multi-exon	FALSE	canonical	3	377	junction_12	47.8466359016781	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTGTTTTGTTGTTTTATT	1916	False	NA	13	True	AATAAA	-15	NA	87017902	87111509	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_87018321_87020541_87020644_87028415_87028457_87031310_87031428_87033952_87034041_87036289_87036413_87037759_87037884_87040121_87040190_87050646_87050772_87054644_87054696_87057427_87057510_87058265_87058343_87068674_87068855_87073246_87073362_87075709_87075929_87077204_87077342_87080899_87080986_87087646_87087842_87092143_87092453_87096758_87096882_87097589_87097780_87100594_87100714_87107262_87107374_87109077
transcript_9171.nnic	chr11	-	1862	10	NNC	ENSMUSG00000007646.14	novel	2061	10	NA	NA	-9	38	at_least_one_novel_splicesite	FALSE	canonical	3	9	junction_1	45.5338701774112	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTGTGTGTATATGTATCTGT	NA	False	NA	0	True	AATAAA	-20	NA	87295358	87269378	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_87270011_87270193_87270314_87271657_87271719_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
transcript_9172.known	chr11	-	2061	10	FSM	ENSMUSG00000007646.14	ENSMUST00000153073.8	2061	10	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_2	58.9867112048589	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAATAGAAATAAAA	NA	False	NA	-38	True	NA	NA	NA	87295332	87269416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_87270314_87271657_87271719_87279073_87279154_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
transcript_9174.known	chr11	-	3944	9	FSM	ENSMUSG00000007646.14	ENSMUST00000067692.13	3944	9	0	0	0	0	multi-exon	FALSE	canonical	3	130	junction_1	12.5940213990607	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATTTTTATGAACATTGGT	NA	False	NA	NA	False	AATAAA	-24	NA	87295349	87267470	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_87270314_87271657_87271719_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
transcript_9175.known	chr11	-	1632	9	FSM	ENSMUSG00000007646.14	ENSMUST00000007790.11	1632	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	50.2120503465055	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGAGGCAGGGTCTTCTGTT	NA	False	NA	NA	False	NA	NA	NA	87295780	87269922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_87270314_87271657_87271719_87279444_87279506_87280659_87280727_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295420
transcript_918.known	chr1	+	4939	9	FSM	ENSMUSG00000026039.10	ENSMUST00000027202.9	4939	9	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	80.2616813928041	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TTTATCTATCTATTTATTTA	5139	False	NA	15	True	ATTAAA	-19	NA	58035129	58065058	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_58035472_58037254_58037381_58039122_58039299_58040376_58040455_58042052_58042139_58052665_58052902_58054517_58057143_58058747_58058902_58063942
transcript_9182.nnic	chr11	-	1879	7	NIC	ENSMUSG00000007646.14	novel	2061	10	NA	NA	-9	0	combination_of_known_splicesites	FALSE	canonical	2	4	junction_2	54.6595523826043	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	80	AAAAAATAATAGAAATAAAA	NA	False	NA	-38	True	NA	NA	NA	87295358	87269416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_87270314_87271657_87271719_87286091_87286224_87288449_87288584_87292215_87292383_87293423_87293683_87295129
transcript_9185.known	chr11	+	164	1	FSM	ENSMUSG00000119476.1	ENSMUST00000240501.1	164	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTTACTTGGTTTTAAAAAT	NA	False	NA	NA	False	NA	NA	NA	87313692	87313856	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_87313700_87313900
transcript_9186.known	chr11	+	164	1	FSM	ENSMUSG00000118815.1	ENSMUST00000093684.3	164	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACTTGTTGTTAAACGAGA	NA	False	NA	NA	False	NA	NA	NA	87317541	87317705	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_87317500_87317700
transcript_9187.known	chr11	+	1678	12	FSM	ENSMUSG00000020486.20	ENSMUST00000107962.8	1678	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	2.18560277821297	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTCAGGTGTCTCTGTATTTT	6936	False	NA	6	True	AATAAA	-17	NA	87469226	87481365	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_87469364_87474143_87474441_87474746_87474841_87475224_87475312_87475943_87476068_87479543_87479679_87479793_87479912_87480000_87480103_87480293_87480391_87480481_87480645_87480781_87480882_87481141
transcript_9188.known	chr11	+	5753	19	FSM	ENSMUSG00000018401.18	ENSMUST00000103179.10	5753	19	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	26.7350973833791	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGTTGGGTCTTTTTATTT	NA	False	NA	20	True	AATAAA	-20	NA	87482987	87507128	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_87483077_87484214_87484260_87488021_87488112_87488440_87488558_87489688_87489772_87491329_87491491_87491599_87491697_87491884_87491999_87493233_87493431_87493605_87493735_87494213_87494326_87494812_87495009_87495243_87495430_87495507_87495679_87495821_87495977_87501758_87503143_87504247_87504359_87504597_87504687_87504901
transcript_9189.known	chr11	+	854	6	FSM	ENSMUSG00000020485.15	ENSMUST00000152700.8	854	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_2	256.77351888386	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTACTGAGGCCTGTGCCT	NA	False	NA	8	True	AATAAA	-25	NA	87628377	87634449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_87628495_87628992_87629100_87631330_87631473_87633621_87633678_87633883_87633938_87634071
transcript_9191.known	chr11	+	799	5	FSM	ENSMUSG00000020485.15	ENSMUST00000141169.2	799	5	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	233.365057367207	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTACTGAGGCCTGTGCCT	NA	False	NA	8	True	AATAAA	-25	NA	87628378	87634449	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_87628495_87628992_87629100_87633533_87633678_87633883_87633938_87634071
transcript_9192.known	chr11	+	706	5	FSM	ENSMUSG00000020485.15	ENSMUST00000093955.12	706	5	0	0	0	0	multi-exon	FALSE	canonical	3	512	junction_3	25.7972866790289	452	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTAAAGGGTACTGAGGCCT	NA	False	NA	2	True	AATAAA	-19	NA	87628377	87634443	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_87628495_87628992_87629100_87633621_87633678_87633883_87633938_87634071
transcript_9195.nnic	chr11	+	2709	19	NNC	ENSMUSG00000034121.13	novel	2499	18	NA	NA	-5029	0	at_least_one_novel_splicesite	FALSE	canonical	3	6	junction_1	43.9924235901289	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	1427	False	NA	18	True	TATAAA	-20	NA	87739011	87754629	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_87739055_87743873_87744156_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
transcript_9196.nnic	chr11	+	2468	18	NNC	ENSMUSG00000034121.13	novel	2194	7	NA	NA	-5070	0	at_least_one_novel_splicesite	FALSE	canonical	3	61	junction_1	31.5170080957562	21	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	1386	False	NA	18	True	TATAAA	-20	NA	87738970	87754629	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_87739055_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
transcript_9198.nnic	chr11	+	2320	17	NNC	ENSMUSG00000034121.13	novel	688	4	NA	NA	-5032	0	at_least_one_novel_splicesite	FALSE	canonical	3	13	junction_1	42.5595171495166	4	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	1424	False	NA	18	True	TATAAA	-20	NA	87739008	87754629	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_87739055_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
transcript_9201.known	chr11	+	2499	18	FSM	ENSMUSG00000034121.13	ENSMUST00000038196.7	2499	18	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_1	22.9555008070187	81	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TCCTCTGTGGACTCTCGTTC	6456	False	NA	18	True	TATAAA	-20	NA	87744040	87754629	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_87744156_87744562_87744673_87745803_87745875_87746297_87746454_87747388_87747487_87747633_87747763_87748012_87748118_87748686_87748805_87749428_87749486_87750440_87750484_87750902_87750969_87751539_87751611_87751935_87752006_87752094_87752203_87752810_87752945_87753393_87753477_87753566_87753665_87753762
transcript_9202.nic	chr11	-	1796	6	ISM	ENSMUSG00000052234.3	ENSMUST00000049768.4	2689	13	5203	0	1435	0	3prime_fragment	FALSE	canonical	2	6	junction_4	6.99714227381436	3	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCCGCTGTCTCTCTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	87761159	87754825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_87755231_87755520_87755734_87756230_87756469_87759376_87759548_87760072_87760329_87760646
transcript_9203.nic	chr11	-	1047	4	ISM	ENSMUSG00000052234.3	ENSMUST00000049768.4	2689	13	6795	0	3027	0	3prime_fragment	FALSE	canonical	3	12	junction_2	4.89897948556636	6	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GGGCCCGCTGTCTCTCTGTT	NA	False	NA	NA	False	AATAAA	-15	NA	87759567	87754825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_87755231_87755520_87755734_87756230_87756469_87759376
transcript_9204.known	chr11	-	2476	3	FSM	ENSMUSG00000020483.15	ENSMUST00000020775.9	2476	3	0	0	0	0	multi-exon	FALSE	canonical	3	615	junction_2	8	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCTGTTGGGGTTTCTTTGGG	NA	False	NA	0	True	ATTAAA	-22	NA	87878359	87870350	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_87872397_87874697_87874837_87878068
transcript_9207.nnic	chr11	-	527	3	NNC	ENSMUSG00000020483.15	novel	2476	3	NA	NA	-26	-1108	at_least_one_novel_splicesite	FALSE	canonical	3	31	junction_2	300	15	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTTTAGTTGCCTGGG	NA	False	NA	-24	True	AGTAAA	-16	NA	87878385	87872088	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_87872397_87874697_87874837_87878305
transcript_9208.nnic	chr11	-	704	3	NNC	ENSMUSG00000020483.15	novel	2443	3	NA	NA	-44298	-1108	at_least_one_novel_splicesite	FALSE	canonical	3	52	junction_2	289.5	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTCTGTTTAGTTGCCTGGG	NA	False	NA	-24	True	AGTAAA	-16	NA	87922657	87872088	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_87872397_87874697_87874837_87922400
transcript_9209.known	chr11	+	5362	4	FSM	ENSMUSG00000018379.18	ENSMUST00000139129.9	5362	4	0	0	0	0	multi-exon	FALSE	canonical	3	1111	junction_3	192.19839287107	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTGAGATTTAAGTTCTCC	6250	False	NA	20	True	AATAAA	-22	NA	87938198	87944581	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_87938859_87939315_87939501_87939868_87940042_87940237
transcript_9211.known	chr11	+	4583	6	FSM	ENSMUSG00000018377.11	ENSMUST00000018521.11	4583	6	0	0	0	0	multi-exon	FALSE	canonical	3	100	junction_5	9.15641851380768	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGATGGACTGTTAATGCCGC	NA	False	NA	17	True	ATTAAA	-22	NA	87959104	87975555	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_87959260_87963882_87964578_87965487_87965552_87967016_87967201_87969228_87969382_87972223
transcript_9215.known	chr11	+	1332	5	FSM	ENSMUSG00000023723.18	ENSMUST00000024486.14	1332	5	0	0	0	0	multi-exon	FALSE	canonical	3	245	junction_1	23.6999472573253	288	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTCTCTATTTGTGGG	NA	False	NA	19	True	AATAAA	-19	NA	88095213	88102333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_88095312_88096014_88096186_88100678_88100757_88100929_88101057_88101475
transcript_9218.known	chr11	+	1404	5	FSM	ENSMUSG00000023723.18	ENSMUST00000118784.8	1404	5	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_1	110.143939915004	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTTGGCTCTCTATTTGTGGG	NA	False	NA	19	True	AATAAA	-19	NA	88095236	88102333	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_88095407_88096014_88096186_88100678_88100757_88100929_88101057_88101475
transcript_9225.known	chr11	-	6436	14	FSM	ENSMUSG00000069769.14	ENSMUST00000107909.8	6436	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	5.72650848321069	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTGTTTAGTGTTCTTGTGT	1982	False	NA	-1	True	AATAAA	-20	NA	88609055	88230207	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_88235487_88237878_88237952_88239609_88239765_88257610_88257674_88276870_88276946_88285390_88285506_88304733_88304817_88370831_88370881_88480880_88480974_88603263_88603306_88607335_88607421_88608115_88608198_88608530_88608572_88608854
transcript_9226.known	chr11	-	1855	14	FSM	ENSMUSG00000069769.14	ENSMUST00000092794.12	1855	14	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_9	5.8895153054003	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ATATTACAAGGTTTTTTGAA	2110	False	NA	NA	False	NA	NA	NA	88608927	88234714	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_88235487_88237878_88237952_88239609_88239819_88257610_88257674_88276870_88276946_88285390_88285506_88304733_88304817_88370831_88370881_88480880_88480974_88603263_88603306_88607335_88607421_88608115_88608198_88608530_88608572_88608854
transcript_9230.known	chr11	-	3758	11	FSM	ENSMUSG00000018428.16	ENSMUST00000018572.11	3758	11	0	0	0	0	multi-exon	FALSE	canonical	3	816	junction_2	49.6891336209437	79	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCTTGAGTCCATTTTTTCTT	NA	False	NA	92	True	TATAAA	-7	NA	88755412	88721617	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_88722656_88723133_88723197_88723967_88724042_88725487_88725556_88725905_88726057_88727837_88728016_88729755_88729884_88730450_88730578_88731994_88732129_88735084_88736692_88755222
transcript_9238.known	chr11	-	2097	13	FSM	ENSMUSG00000000278.11	ENSMUST00000000287.9	2097	13	0	0	0	0	multi-exon	FALSE	canonical	3	2404	junction_3	148.297748540638	1106	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGACGGCTGAAAATTCTGTT	5201	False	NA	-9	True	AATAAA	-20	NA	88846291	88814845	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_88815551_88819990_88820155_88821033_88821172_88824273_88824388_88825403_88825498_88826648_88826778_88827839_88827878_88832109_88832183_88834622_88834698_88835200_88835357_88837970_88838061_88843231_88843381_88846119
transcript_925.known	chr1	-	2512	7	FSM	ENSMUSG00000054770.17	ENSMUST00000114410.10	2512	7	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_6	14.3372087784044	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTTTCTGTGACTACTTACT	NA	False	NA	1	True	AATAAA	-25	NA	58009287	57994406	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004487_58004700_58006655_58006883_58009179
transcript_9253.known	chr11	-	704	3	FSM	ENSMUSG00000057534.14	ENSMUST00000121228.2	704	3	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	27	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTCTCGCGTCATACT	6805	False	NA	0	True	AATAAA	-26	NA	88857757	88855483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_88856100_88857540_88857603_88857731
transcript_9254.known	chr11	-	819	2	FSM	ENSMUSG00000057534.14	ENSMUST00000061938.14	819	2	0	0	0	0	multi-exon	FALSE	canonical	3	61	junction_1	0	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TACTGCTCTCGCGTCATACT	6819	False	NA	0	True	AATAAA	-26	NA	88857743	88855483	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_88856100_88857540
transcript_9256.known	chr11	+	2607	7	FSM	ENSMUSG00000033983.15	ENSMUST00000036649.8	2607	7	0	0	0	0	multi-exon	FALSE	canonical	3	336	junction_2	22.1616535684702	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	NA	False	NA	15	True	AATAAA	-17	NA	88864760	88882439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
transcript_9260.known	chr11	+	3120	11	FSM	ENSMUSG00000033983.15	ENSMUST00000107898.8	3120	11	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_3	472.900412349154	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCCACTCTGAGTTATGTT	9431	False	NA	15	True	AATAAA	-17	NA	88861077	88882439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_88861099_88861243_88861306_88863446_88863680_88864257_88864384_88864689_88865029_88871894_88872994_88873114_88873202_88873428_88873477_88875842_88875913_88878804_88878894_88881493
transcript_9261.nnic	chr11	-	558	3	NNC	ENSMUSG00000085152.2	novel	581	2	NA	NA	-18	168	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	9.5	5	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTGTTCTTATGTACCTTTT	9021	False	NA	NA	False	NA	NA	NA	88887388	88883697	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_88883705_88883913_88884304_88887227
transcript_9262.known	chr11	-	581	2	FSM	ENSMUSG00000085152.2	ENSMUST00000128078.2	581	2	0	0	0	0	multi-exon	FALSE	canonical	3	19	junction_1	0	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTCCAGAGTTCAAATCCC	9039	False	NA	NA	False	NA	NA	NA	88887370	88883865	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_88884304_88887227
transcript_9264.known	chr11	+	5590	9	FSM	ENSMUSG00000000275.17	ENSMUST00000107896.10	5590	9	0	0	0	0	multi-exon	TRUE	canonical	3	172	junction_5	154.213123630902	17	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGACATTGTCCTGCCTTTTG	NA	False	NA	24	True	NA	NA	NA	88890201	88911119	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_88890909_88895554_88895651_88899944_88900179_88901630_88901800_88904301_88904365_88905992_88906017_88906358_88906458_88906544_88906644_88907020
transcript_9265.known	chr11	-	2723	6	FSM	ENSMUSG00000020553.9	ENSMUST00000020864.9	2723	6	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_1	5.78273291792038	28	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGTCTGGTATTTGATTTTC	NA	False	NA	NA	False	ATTAAA	-17	NA	89893720	89873490	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_89875583_89876918_89876987_89878021_89878194_89879520_89879601_89881896_89882015_89893527
transcript_9266.nnic	chr11	-	1916	5	NIC	ENSMUSG00000020553.9	novel	2723	6	NA	NA	-23	-762	combination_of_known_splicesites	FALSE	canonical	2	2	junction_1	18.1435250158287	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTCTCTGTGTGCTGTCTCC	NA	False	NA	-11	True	AATAAA	-15	NA	89893743	89874252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_89875583_89878021_89878194_89879520_89879601_89881896_89882015_89893527
transcript_9267.known	chr11	+	2677	7	FSM	ENSMUSG00000003948.18	ENSMUST00000004050.7	2677	7	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_6	11.2249721603218	13	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATATGGCTGAGAGTAATGCT	NA	False	NA	29	True	AATAAA	-34	NA	90140301	90169415	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_90140562_90148345_90148428_90150652_90150814_90155328_90155404_90156870_90156973_90158337_90158408_90167488
transcript_927.known	chr1	-	2495	7	FSM	ENSMUSG00000054770.17	ENSMUST00000161608.8	2495	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_6	29.1228241914978	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGACTTTTCTGTGACTAC	NA	False	NA	-4	True	AATAAA	-20	NA	58008683	57994411	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_57995980_57998301_57998405_58001059_58001155_58002226_58002421_58004509_58004700_58006655_58006883_58008565
transcript_9270.known	chr11	-	1782	16	FSM	ENSMUSG00000020546.15	ENSMUST00000020858.14	1782	16	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_13	1.92527054375915	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTTCTGGTAGTTCAATTGCA	NA	False	NA	NA	False	ATTAAA	-22	NA	90528888	90426205	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_90426440_90428736_90428787_90430991_90431109_90439636_90439814_90462547_90462614_90466075_90466166_90483157_90483250_90485570_90485668_90491011_90491107_90496778_90496858_90497793_90498011_90498170_90498278_90510008_90510142_90512480_90512609_90513017_90513088_90528858
transcript_9271.known	chr11	-	4308	16	FSM	ENSMUSG00000020541.13	ENSMUST00000020849.9	4308	16	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_9	19.1849478034792	121	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGAATGTCCCTGTTGGTTGT	NA	False	NA	NA	False	AATAAA	-13	NA	90578433	90534290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90563658_90563764_90564489_90564613_90565495_90565646_90574060_90574140_90575887_90575973_90578338
transcript_9272.known	chr11	-	2093	16	FSM	ENSMUSG00000020541.13	ENSMUST00000107868.8	2093	16	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_14	62.6969430408426	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGTGTTGTTGTTTTGTC	NA	False	NA	-2	True	ATTAAA	-17	NA	90578427	90536516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90563658_90563764_90564489_90564613_90565495_90565646_90574060_90574157_90575887_90575973_90578338
transcript_9273.nic	chr11	-	1952	15	NIC	ENSMUSG00000020541.13	novel	4308	16	NA	NA	-2	0	combination_of_known_junctions	FALSE	canonical	3	12	junction_10	63.368093754842	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GTTGTGTTGTTGTTTTGTCT	NA	False	NA	-1	True	ATTAAA	-18	NA	90578407	90536515	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90564489_90564613_90565495_90565646_90574060_90574140_90575887_90575973_90578338
transcript_9274.known	chr11	-	1826	14	FSM	ENSMUSG00000020541.13	ENSMUST00000107869.9	1826	14	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_10	65.6742003507921	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTGTGTTGTTGTTTTGTC	NA	False	NA	-2	True	ATTAAA	-17	NA	90578405	90536516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_90537136_90537660_90537726_90540173_90540250_90540611_90540715_90542736_90542789_90547176_90547277_90548539_90548658_90548973_90549035_90552581_90552716_90561909_90562027_90565495_90565646_90574060_90574140_90575887_90575973_90578338
transcript_9278.known	chr11	+	1224	4	FSM	ENSMUSG00000020544.15	ENSMUST00000020851.15	1224	4	0	0	0	0	multi-exon	FALSE	canonical	3	285	junction_3	41.2876091178294	40	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAGGCCTGACAACTTGA	NA	False	NA	10	True	NA	NA	NA	90528998	90535757	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_90529379_90531202_90531359_90534478_90534605_90535195
transcript_9280.nnic	chr11	+	1219	4	NNC	ENSMUSG00000020544.15	novel	1224	4	NA	NA	17	0	at_least_one_novel_splicesite	FALSE	canonical	3	25	junction_1	152.067967260257	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACATAGGCCTGACAACTTGA	NA	False	NA	10	True	NA	NA	NA	90529015	90535757	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_90529379_90531190_90531359_90534478_90534605_90535195
transcript_9284.known	chr11	-	2613	14	FSM	ENSMUSG00000054079.13	ENSMUST00000066888.10	2613	14	0	0	0	0	multi-exon	TRUE	canonical	3	770	junction_1	49.2161035848126	318	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	ACACATGCTTTGATCAAACT	NA	False	NA	NA	False	AAGAAA	-4	NA	93776592	93750068	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_93750895_93751619_93751664_93752784_93752928_93757171_93757347_93759156_93759281_93760631_93760723_93761305_93761407_93766609_93766785_93766880_93767007_93768809_93768899_93770888_93770960_93772900_93773000_93774492_93774609_93776159
transcript_9290.known	chr11	-	991	8	FSM	ENSMUSG00000091228.2	ENSMUST00000170303.2	991	8	0	0	0	0	multi-exon	FALSE	canonical	3	110	junction_4	2495.73089372183	58	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGAGTGTGCAGTGTTCAGT	613	False	NA	-33	True	NA	NA	NA	93859119	93840644	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93851493_93851607_93854052_93854155_93856633_93856764_93859046
transcript_9292.known	chr11	-	1012	5	FSM	ENSMUSG00000020857.12	ENSMUST00000021217.11	1012	5	0	0	0	0	multi-exon	FALSE	canonical	3	5665	junction_4	866.911327645452	3554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGTGCAGTGTTCAGTACTCA	NA	False	NA	-28	True	NA	NA	NA	93847085	93840639	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320_93846451_93846651
transcript_9295.known	chr11	-	3181	5	FSM	ENSMUSG00000037601.12	ENSMUST00000135884.8	3181	5	0	0	0	0	multi-exon	FALSE	canonical	3	3315	junction_4	669.623401622136	226	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCATATTATGTGTAGGTGTG	385	False	NA	NA	False	NA	NA	NA	93859347	93847804	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_93850340_93851493_93851607_93854052_93854155_93856633_93856764_93859046
transcript_9303.known	chr11	-	734	4	FSM	ENSMUSG00000020857.12	ENSMUST00000072566.5	734	4	0	0	0	0	multi-exon	FALSE	canonical	3	6715	junction_3	620.302256072706	365	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAGTGTGCAGTGTTCAGTAC	NA	False	NA	-31	True	NA	NA	NA	93846609	93840642	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_93840873_93842725_93842839_93843625_93843728_93846320
transcript_9304.known	chr11	+	5954	21	FSM	ENSMUSG00000020859.17	ENSMUST00000153076.2	5954	21	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_17	21.2365251394855	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGTGAAGTCTAGTGTGGT	NA	False	NA	9	True	TATAAA	-16	NA	93973613	94016911	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_93973739_93974773_93974826_93977072_93977204_93980424_93980482_93981383_93981558_93982589_93982720_93983163_93983254_93983640_93983809_93984312_93984485_93988043_93988263_93988506_93988703_93989852_93989979_93990932_93991014_93992916_93992985_93997459_93997609_93999280_93999453_94002858_94002973_94004088_94004128_94004998_94005176_94007555_94007706_94013547
transcript_9305.nic	chr11	+	1333	5	ISM	ENSMUSG00000020859.17	ENSMUST00000024979.15	6756	27	64142	2590	25719	-2587	3prime_fragment	FALSE	canonical	3	69	junction_2	4.76969600708473	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTACGAAGCCTGCTTCTC	2788	False	NA	45	True	AATAAA	-33	NA	93999332	94014319	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_93999453_94002858_94002973_94004998_94005176_94007555_94007706_94013547
transcript_9306.known	chr11	-	411	1	FSM	ENSMUSG00000081604.6	ENSMUST00000118048.2	411	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1047	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATATTTTTGTTTTGGTCA	NA	False	NA	NA	False	NA	NA	NA	93928454	93928043	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_93928000_93928500
transcript_9307.known	chr11	+	695	6	FSM	ENSMUSG00000086003.8	ENSMUST00000132584.8	695	6	0	0	0	0	multi-exon	FALSE	canonical	1	5	junction_2	57.6520598070876	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGTTTACCTGCTTGTA	NA	False	NA	15	True	AATAAA	-22	NA	94024310	94046602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_94024382_94029312_94029490_94040661_94040792_94042163_94042239_94046281_94046324_94046402
transcript_9308.known	chr11	+	473	4	FSM	ENSMUSG00000086003.8	ENSMUST00000155965.2	473	4	0	0	0	0	multi-exon	FALSE	canonical	3	69	junction_1	38.4967531098403	42	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTAGTGTTTACCTGCTTGTA	NA	False	NA	15	True	AATAAA	-22	NA	94024327	94046602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_94024382_94029312_94029490_94046281_94046324_94046402
transcript_9312.nic	chr11	-	2090	13	NIC	ENSMUSG00000020863.16	novel	5244	12	NA	NA	-6	-7	combination_of_known_junctions	FALSE	canonical	2	19	junction_1	99.7659413605443	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTTGCAGAGTTGATTGTCT	NA	False	NA	-12	True	AATAAA	-16	NA	94212820	94181971	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_94182405_94183232_94183299_94183752_94183859_94183963_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_9315.known	chr11	-	5244	12	FSM	ENSMUSG00000020863.16	ENSMUST00000166312.8	5244	12	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_1	82.4268270539502	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGACTTGGTGTAGGTAGTGA	NA	False	NA	NA	False	AATAAA	-24	NA	94212784	94178715	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_94182405_94183752_94183859_94183963_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_9317.known	chr11	-	3373	11	FSM	ENSMUSG00000020863.16	ENSMUST00000021226.14	3373	11	0	0	0	0	multi-exon	FALSE	canonical	3	68	junction_1	62.20843994186	18	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGATTGTCTGTGTCAT	NA	False	NA	-5	True	AATAAA	-23	NA	94212814	94181964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_94183859_94183963_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_9319.known	chr11	-	2050	11	FSM	ENSMUSG00000020863.16	ENSMUST00000107821.9	2050	11	0	0	0	0	multi-exon	FALSE	canonical	3	229	junction_1	26.33172990899	139	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTAAATATGAGGCATACTAG	NA	False	NA	73	True	AATAAA	-27	NA	94212814	94181886	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_94182405_94183910_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_9321.known	chr11	-	3478	10	FSM	ENSMUSG00000020863.16	ENSMUST00000107820.2	3478	10	0	0	0	0	multi-exon	FALSE	canonical	3	230	junction_9	26.1850018328748	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GAGTTGATTGTCTGTGTCAT	NA	False	NA	-5	True	AATAAA	-23	NA	94212814	94181964	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_94184105_94186745_94186907_94187709_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_9325.nic	chr11	-	1052	8	ISM	ENSMUSG00000020863.16	ENSMUST00000021226.14	3373	11	-6	5876	-6	0	5prime_fragment	FALSE	canonical	3	230	junction_7	21.9981446341945	32	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGAGCTCGTGACAGAGAAAG	NA	False	NA	-14	True	NA	NA	NA	94212820	94187840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_9326.nic	chr11	-	1011	8	ISM	ENSMUSG00000020863.16	ENSMUST00000021226.14	3373	11	-6	5917	-6	0	5prime_fragment	FALSE	canonical	3	230	junction_7	21.9981446341945	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAGAAAAAGACGAAGAGAA	NA	False	NA	6	True	NA	NA	NA	94212820	94187881	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_94187994_94188584_94188747_94190781_94190887_94192330_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_9328.nic	chr11	-	580	5	ISM	ENSMUSG00000020863.16	ENSMUST00000021226.14	3373	11	-6	10418	-6	-4501	5prime_fragment	FALSE	canonical	3	230	junction_4	26.7429897356298	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGAAAAAATTCAGGTTC	NA	False	NA	NA	False	NA	NA	NA	94212820	94192382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_94192406_94194667_94194813_94197011_94197052_94200450_94200518_94212515
transcript_9330.known	chr11	+	3487	5	FSM	ENSMUSG00000020864.14	ENSMUST00000107818.9	3487	5	0	0	0	0	multi-exon	FALSE	canonical	3	454	junction_3	18.6061145863396	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CCAGCCCATTCTCTCTCGTT	3994	False	NA	17	True	ATTAAA	-18	NA	94218826	94232667	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_94219214_94224726_94224876_94225253_94225734_94229165_94229348_94230378
transcript_9331.nnic	chr11	-	1028	4	NNC	ENSMUSG00000020865.17	novel	5005	31	NA	NA	-440	0	at_least_one_novel_splicesite	FALSE	canonical	3	20	junction_3	32.8937684067971	13	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGTCACATGTTACCTT	495	False	NA	-4	True	AATAAA	-17	NA	94242452	94234120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_94234602_94236772_94236968_94241761_94241929_94242267
transcript_9333.nic	chr11	-	1148	4	ISM	ENSMUSG00000020865.17	ENSMUST00000178136.8	5005	31	40873	0	-917	0	intron_retention	FALSE	canonical	3	69	junction_3	10.6249183003395	21	NA	NA	FALSE	0	NA	NA	B	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTGGGTCACATGTTACCTT	18	False	NA	-4	True	AATAAA	-17	NA	94242929	94234120	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_94234602_94236772_94236968_94241761_94241929_94242624
transcript_9334.known	chr11	-	4203	9	FSM	ENSMUSG00000039096.11	ENSMUST00000132274.8	4203	9	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_8	12.2270192606375	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTGCGTAGCTCCTCCTT	3195	False	NA	1	True	AATAAA	-20	NA	94440081	94430623	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_94433474_94433706_94433811_94434119_94434175_94434380_94434529_94434930_94434995_94435245_94435612_94438984_94439190_94439296_94439431_94439804
transcript_9336.nic	chr11	-	2270	8	ISM	ENSMUSG00000039096.11	ENSMUST00000040487.4	4143	9	183	2068	183	-2068	intron_retention	FALSE	canonical	3	12	junction_3	10.4295498562537	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TATTTTTATCCAAGGCCACT	3434	False	NA	NA	False	NA	NA	NA	94439842	94432691	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_94433474_94433706_94433811_94434119_94434175_94434380_94434529_94434930_94434995_94435245_94435612_94438984_94439190_94439296
transcript_9337.known	chr11	-	3154	16	FSM	ENSMUSG00000076435.4	ENSMUST00000103164.4	3154	16	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_6	8.37615663654877	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGATTGGACTGTAACTC	7285	False	NA	-4	True	AATAAA	-19	NA	94492697	94447927	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_94449184_94449465_94449535_94449690_94449802_94450288_94450431_94452065_94452218_94453636_94453745_94460135_94460213_94460766_94460859_94461128_94461287_94461439_94461536_94462096_94462263_94462387_94462507_94463051_94463106_94463347_94463477_94463858_94464055_94492468
transcript_9341.known	chr11	-	2444	9	FSM	ENSMUSG00000039055.5	ENSMUST00000039949.5	2444	9	0	0	0	0	multi-exon	TRUE	canonical	3	178	junction_8	32.4422563950167	53	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGTGGAGCTTGGAGGAAGAC	4403	False	NA	-5	True	AATAAA	-18	NA	94544790	94535821	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_94536432_94536641_94536832_94538116_94538233_94538453_94538575_94538769_94538889_94538968_94539056_94540833_94540965_94541048_94541850_94544521
transcript_9344.known	chr11	+	756	4	FSM	ENSMUSG00000024414.14	ENSMUST00000025278.8	756	4	0	0	0	0	multi-exon	FALSE	canonical	3	766	junction_3	47.8632310744781	634	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	GATGGAAAGGGACAGGACAG	NA	False	NA	19	True	NA	NA	NA	94544592	94550915	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_94544668_94547312_94547445_94547808_94547877_94550434
transcript_9345.known	chr11	+	655	4	FSM	ENSMUSG00000024414.14	ENSMUST00000132813.8	655	4	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_1	381.100453365718	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGGAGAGATGGCTCAGCAGT	NA	False	NA	NA	False	NA	NA	NA	94544601	94550744	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_94544668_94547233_94547445_94547808_94547877_94550434
transcript_9347.known	chr11	+	439	4	FSM	ENSMUSG00000024414.14	ENSMUST00000125148.2	439	4	0	0	0	0	multi-exon	FALSE	canonical	3	93	junction_1	344.111416065592	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCACTAGTCTGCCCAAGGGT	NA	False	NA	NA	False	AAAACA	-19	NA	94544856	94550543	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_94544987_94547312_94547445_94547808_94547877_94550434
transcript_9349.known	chr11	-	3442	11	FSM	ENSMUSG00000020868.16	ENSMUST00000116349.9	3442	11	0	0	0	0	multi-exon	FALSE	canonical	3	112	junction_7	13.508885964431	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTCAATGTCCTTGTTTGCT	2205	False	NA	-6	True	AATATA	-16	NA	94568341	94554676	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_94555736_94557023_94557358_94557924_94558121_94558409_94558673_94558886_94559064_94559150_94559368_94559552_94559634_94560266_94560470_94560732_94560909_94561133_94561627_94568098
transcript_9351.nnic	chr11	-	2693	5	NNC	ENSMUSG00000075611.6	novel	375	3	NA	NA	-3419	1840	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_1	1.58113883008419	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TAAATGTGTGTGTGTTTCTC	1924	False	NA	NA	False	AATAAA	-20	NA	94652008	94645961	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_94647982_94648187_94648387_94648522_94648622_94649100_94649124_94651656
transcript_9353.nic	chr11	+	1339	5	ISM	ENSMUSG00000001506.11	ENSMUST00000001547.8	5930	51	13784	1145	4640	-1145	3prime_fragment	FALSE	canonical	2	4	junction_1	14.6180539060437	15	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTTGGTCCTCTTGCTTGAA	NA	False	NA	NA	False	AAAAAG	-4	NA	94840833	94842723	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_94841031_94841116_94841400_94841534_94841726_94841926_94842170_94842298
transcript_9354.known	chr11	-	2246	11	FSM	ENSMUSG00000038967.14	ENSMUST00000038431.8	2246	11	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	6.12290780593665	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGCTGCCTGGCTTCCTTGC	6074	False	NA	-1	True	NA	NA	NA	94932180	94917083	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_94918149_94918690_94918805_94919304_94919413_94919523_94919623_94919747_94919825_94920479_94920558_94920742_94920833_94922661_94922847_94923290_94923363_94930174_94930317_94931964
transcript_9355.known	chr11	-	3560	15	FSM	ENSMUSG00000038909.17	ENSMUST00000107734.10	3560	15	0	0	0	0	multi-exon	FALSE	canonical	3	566	junction_10	130.748239149965	105	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201072	95165084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
transcript_9357.known	chr11	-	3470	14	FSM	ENSMUSG00000038909.17	ENSMUST00000107733.10	3470	14	0	0	0	0	multi-exon	FALSE	canonical	3	281	junction_9	177.090656421269	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201072	95165084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_95166714_95167268_95167376_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
transcript_9358.nic	chr11	-	3451	14	NIC	ENSMUSG00000038909.17	novel	3560	15	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	152	junction_1	222.401444165419	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201070	95165084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_95166714_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95182345_95182436_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
transcript_9359.nic	chr11	-	3361	13	NIC	ENSMUSG00000038909.17	novel	3470	14	NA	NA	2	0	combination_of_known_junctions	FALSE	canonical	3	152	junction_1	258.98824244012	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGTCTGACTGCTCTGAAGCT	NA	False	NA	-5	True	AATAAA	-17	NA	95201070	95165084	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_95166714_95168294_95168442_95171216_95171311_95172326_95172468_95172664_95172755_95174854_95175047_95177155_95177267_95180597_95180697_95185388_95185472_95190804_95191045_95193958_95194136_95196874_95197023_95200860
transcript_9361.known	chr11	+	1523	9	FSM	ENSMUSG00000020873.16	ENSMUST00000021243.16	1523	9	0	0	0	0	multi-exon	FALSE	canonical	3	233	junction_2	19.5923294939627	232	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGACCCTGCTGCTGC	NA	False	NA	21	True	AATAAA	-22	NA	95275517	95282602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_95275940_95276626_95276731_95277311_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
transcript_9362.known	chr11	+	1299	9	FSM	ENSMUSG00000020873.16	ENSMUST00000131193.3	1299	9	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_2	72.2789734293453	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGACCCTGCTGCTGC	NA	False	NA	21	True	AATAAA	-22	NA	95275716	95282602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_95275940_95276626_95276731_95277336_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
transcript_9366.nic	chr11	+	2172	8	NIC	ENSMUSG00000020873.16	novel	1523	9	NA	NA	-68	0	intron_retention	FALSE	canonical	3	260	junction_3	11.771636613973	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GTGCGAGACCCTGCTGCTGC	NA	False	NA	21	True	AATAAA	-22	NA	95275449	95282602	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_95275940_95276626_95277443_95278036_95278068_95278595_95278754_95279905_95280033_95281103_95281211_95281350_95281505_95282313
transcript_9369.known	chr11	+	2881	11	FSM	ENSMUSG00000057522.16	ENSMUST00000107724.9	2881	11	0	0	0	0	multi-exon	FALSE	canonical	3	59	junction_1	65.0422170593838	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCTGTCATTGATGTA	NA	False	NA	NA	False	AATAAA	-20	NA	95304905	95384232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_95304958_95305157_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
transcript_937.known	chr1	+	3876	12	FSM	ENSMUSG00000051223.15	ENSMUST00000050552.15	3876	12	0	0	0	0	multi-exon	FALSE	canonical	3	1694	junction_11	87.7965341283964	277	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACGTACTGTGTCTGTGCTTT	657	False	NA	13	True	NA	NA	NA	58432056	58446512	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_58432376_58433360_58433435_58436834_58437012_58438162_58438258_58439237_58439304_58439865_58440002_58440272_58440383_58440499_58440671_58442045_58442193_58442773_58442913_58443390_58443514_58444193
transcript_9376.known	chr11	+	3063	10	FSM	ENSMUSG00000057522.16	ENSMUST00000107722.8	3063	10	0	0	0	0	multi-exon	FALSE	canonical	3	227	junction_3	21.694853460364	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGGGTCCTGTCATTGATGTA	NA	False	NA	NA	False	AATAAA	-20	NA	95304923	95384232	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_95305231_95361347_95361492_95362048_95362171_95365056_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
transcript_9379.nic	chr11	+	2634	10	NIC	ENSMUSG00000057522.16	novel	3063	10	NA	NA	-20	-392	intron_retention	FALSE	canonical	3	26	junction_3	78.3794190673377	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGTGTGGTATCTCTGGTCT	NA	False	NA	5	True	TATAAA	-17	NA	95304885	95383840	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_95305231_95361347_95361492_95362048_95362171_95365131_95365209_95365310_95365439_95372739_95372918_95376117_95376174_95376662_95376786_95381110_95381254_95382522
transcript_9383.known	chr11	-	2099	2	FSM	ENSMUSG00000046719.8	ENSMUST00000058866.8	2099	2	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	0	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTCTATTCTAAGTAATCCAG	NA	False	NA	1	True	AATAAA	-20	NA	95405396	95400670	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_95402359_95404985
transcript_9384.known	chr11	-	3446	6	FSM	ENSMUSG00000000120.7	ENSMUST00000000122.7	3446	6	0	0	0	0	multi-exon	FALSE	canonical	3	62	junction_2	5.88557558782486	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	GAAAACGATGCCAAGAGAAT	NA	False	NA	NA	False	ATTAAA	-15	NA	95478561	95459643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_95461922_95462645_95462807_95465016_95465270_95468799_95469160_95471778_95471921_95478309
transcript_9392.known	chr11	+	1799	7	FSM	ENSMUSG00000038845.12	ENSMUST00000125172.8	1799	7	0	0	0	0	multi-exon	FALSE	canonical	3	4384	junction_3	774.980806213935	1873	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCGGGGTGTGTTTTCAATT	NA	False	NA	11	True	AATAAA	-25	NA	95557782	95571599	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_95557869_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
transcript_9397.known	chr11	+	724	7	FSM	ENSMUSG00000038845.12	ENSMUST00000036374.6	724	7	0	0	0	0	multi-exon	FALSE	canonical	3	311	junction_1	2134.13703610825	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGGCAGCCATCATCTCTGC	NA	False	NA	NA	False	NA	NA	NA	95557889	95570534	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_95557966_95558862_95558978_95562212_95562375_95565967_95566111_95566395_95566513_95568876_95568973_95570519
transcript_94.known	SIRV3	+	2467	5	FSM	SIRV3A	SIRV301	2467	5	0	0	0	0	multi-exon	FALSE	canonical	3	1234	junction_3	576.603416569829	369	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTAACGTCTCGTAAGAC	NA	False	NA	NA	False	NA	NA	NA	1944	8939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV3_+_2006_4568_4780_6057_7989_8127_8208_8755
transcript_9403.known	chr11	+	563	4	FSM	ENSMUSG00000038811.14	ENSMUST00000107711.8	563	4	0	0	0	0	multi-exon	FALSE	canonical	2	4	junction_2	5.71547606649408	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95733134	95736560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_95733253_95734637_95734722_95735857_95735967_95736308
transcript_9404.known	chr11	+	558	4	FSM	ENSMUSG00000038811.14	ENSMUST00000107714.9	558	4	0	0	0	0	multi-exon	FALSE	canonical	2	7	junction_2	4.54606056566195	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCTCGGAGTGGATTCTCAAT	NA	False	NA	NA	False	AATAAA	-22	NA	95733120	95736560	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_95733253_95734637_95734722_95735876_95735967_95736308
transcript_9408.known	chr11	+	1269	2	FSM	ENSMUSG00000086015.2	ENSMUST00000146868.2	1269	2	0	0	0	0	multi-exon	TRUE	canonical	3	111	junction_1	0	32	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	45	ATATATTATAAATGTATATT	1026	False	NA	NA	False	NA	NA	NA	95749690	95751870	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_95749909_95750819
transcript_9410.nnic	chr11	-	2098	12	NNC	ENSMUSG00000013418.9	novel	1722	11	NA	NA	-14	1262	at_least_one_novel_splicesite	FALSE	non_canonical	0	0	junction_1	10.1068669888635	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAAGAAAAGATTGTGAGCCT	2876	False	NA	NA	False	NA	NA	NA	95805731	95755506	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_95755699_95756598_95757103_95757575_95757796_95759175_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
transcript_9412.known	chr11	-	1722	11	FSM	ENSMUSG00000013418.9	ENSMUST00000038343.7	1722	11	0	0	0	0	multi-exon	FALSE	canonical	3	16	junction_4	6.67907179179862	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGCTGGAGCTAGGGTAGGAC	2890	False	NA	NA	False	NA	NA	NA	95805717	95756768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_95757103_95757575_95757796_95759175_95759317_95760059_95760248_95764687_95764775_95766923_95767105_95774768_95774807_95779632_95779740_95781798_95781937_95782583_95782800_95805645
transcript_9414.nic	chr11	-	828	3	ISM	ENSMUSG00000013418.9	ENSMUST00000038343.7	1722	11	1	24627	1	-24627	5prime_fragment	FALSE	canonical	3	31	junction_1	3	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAAACATTTCAGTAAAACT	2891	False	NA	NA	False	NA	NA	NA	95805716	95781395	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_95781937_95782583_95782800_95805645
transcript_9418.nic	chr11	-	2505	15	NIC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-21	730	combination_of_known_junctions	FALSE	canonical	0	0	junction_14	223.647955866503	58	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTATGGCTGAGCTCTTG	NA	False	NA	30	True	AAAAAG	-4	NA	95873458	95853531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95871874_95871957_95873327
transcript_9420.known	chr11	-	8378	15	FSM	ENSMUSG00000013415.10	ENSMUST00000013559.3	8378	15	0	0	0	0	multi-exon	FALSE	canonical	3	452	junction_5	71.7782867514933	93	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGAGTGTGTCTGTGCTTC	NA	False	NA	-5	True	AATAAA	-19	NA	95896766	95847988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95895048_95895110_95896284
transcript_9424.nic	chr11	-	2492	14	NIC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-90	730	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	177.836138924832	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCCTTATGGCTGAGCTCTTG	NA	False	NA	30	True	AAAAAG	-4	NA	95873527	95853531	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95873327
transcript_9427.nic	chr11	-	2069	14	NIC	ENSMUSG00000013415.10	novel	8378	15	NA	NA	-90	307	combination_of_known_junctions	FALSE	canonical	0	0	junction_13	177.836138924832	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATGGTTTGTTTCTTAACC	NA	False	NA	NA	False	AATAAA	-30	NA	95873527	95853954	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_95854419_95857002_95857117_95857476_95857609_95858374_95858450_95859188_95859309_95859624_95859748_95860674_95860811_95861494_95861618_95863870_95864006_95864764_95865047_95866085_95866150_95870107_95870160_95870446_95870496_95873327
transcript_9430.known	chr11	+	1004	8	FSM	ENSMUSG00000006058.11	ENSMUST00000006217.10	1004	8	0	0	0	0	multi-exon	FALSE	canonical	3	665	junction_5	23.859281341282	405	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTTCCCCCAGTAT	3197	False	NA	21	True	AATAAA	-43	NA	95925710	95938256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95932450_95932556_95934229_95934303_95935986_95936129_95937105_95937181_95938020
transcript_9433.known	chr11	+	849	7	FSM	ENSMUSG00000006058.11	ENSMUST00000107700.4	849	7	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_6	239.545866635645	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTGTTCCCCCAGTAT	3277	False	NA	21	True	AATAAA	-43	NA	95925790	95938256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_95925894_95926144_95926196_95930104_95930244_95932450_95932556_95934229_95934303_95935986_95936129_95938020
transcript_9446.known	chr11	-	691	5	FSM	ENSMUSG00000006057.16	ENSMUST00000107686.8	691	5	0	0	0	0	multi-exon	FALSE	canonical	3	143	junction_4	4410.8346149	106	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ACCATGTGCCTGTGCCTGTC	3568	False	NA	-6	True	NA	NA	NA	95966407	95963812	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966252
transcript_9447.known	chr11	-	596	5	FSM	ENSMUSG00000006057.16	ENSMUST00000107684.2	596	5	0	0	0	0	multi-exon	FALSE	canonical	3	5157	junction_4	2293.78611688187	3363	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TAAACCATGTGCCTGTGCCT	3530	False	NA	-9	True	NA	NA	NA	95966445	95963815	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966382
transcript_9449.known	chr11	-	4715	5	FSM	ENSMUSG00000006057.16	ENSMUST00000090541.12	4715	5	0	0	0	0	multi-exon	FALSE	canonical	3	2808	junction_4	3276.79938163751	3495	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TATCTGGTCCAATTTCTGAT	3479	False	NA	NA	False	TTTAAA	-2	NA	95966496	95959677	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_95964045_95964348_95964528_95964787_95964866_95965812_95965860_95966452
transcript_9456.known	chr11	-	1621	6	FSM	ENSMUSG00000006056.14	ENSMUST00000068686.13	1621	6	0	0	0	0	multi-exon	FALSE	canonical	3	294	junction_5	66.2751838926155	276	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTATGTGAGTACACTATC	4211	False	NA	-2	True	NA	NA	NA	96002790	95990151	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_95991229_95993473_95993579_95994042_95994177_95994283_95994387_95998256_95998431_96002762
transcript_9460.known	chr11	+	2206	2	FSM	ENSMUSG00000049604.4	ENSMUST00000062709.4	2206	2	0	0	0	0	multi-exon	FALSE	canonical	2	9	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTTCCCTCTTCTTCCTCA	3944	False	NA	NA	False	AATAAA	-20	NA	96085141	96088273	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_96085873_96086798
transcript_9461.known	chr11	+	557	1	FSM	ENSMUSG00000083337.2	ENSMUST00000119837.2	557	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	24	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCCTGGATCTTAACTGTTAA	5803	False	NA	NA	False	NA	NA	NA	96139458	96140015	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_96139500_96140000
transcript_9469.known	chr11	+	3257	2	FSM	ENSMUSG00000078706.5	ENSMUST00000150490.3	3257	2	0	0	0	0	multi-exon	FALSE	canonical	3	27	junction_1	0	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTCCATCAATTTTTTTTTC	8814	False	NA	NA	False	NA	NA	NA	96142469	96155524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_96142640_96152437
transcript_9470.known	chr11	+	1291	2	FSM	ENSMUSG00000038721.9	ENSMUST00000049352.8	1291	2	0	0	0	0	multi-exon	FALSE	canonical	3	4	junction_1	0	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ACAGACACGCTGTGTTTTCT	84	False	NA	NA	False	AATAAA	-17	NA	96177448	96180988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_96177954_96180202
transcript_9471.known	chr11	-	2551	9	FSM	ENSMUSG00000020876.15	ENSMUST00000021246.9	2551	9	0	0	0	0	multi-exon	FALSE	canonical	3	53	junction_6	14.0529133990073	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AGATGCAAAGCCCTGGCTGC	NA	False	NA	-7	True	AATAAA	-15	NA	96668357	96658380	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96666199_96666260_96667793_96667888_96668280
transcript_9473.known	chr11	-	2197	8	FSM	ENSMUSG00000020876.15	ENSMUST00000107661.10	2197	8	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_6	17.839419776416	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AAGACTGTTGTTGCAATTTG	NA	False	NA	-16	True	AATAAA	-13	NA	96668385	96658702	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_96660149_96661464_96661678_96661854_96661951_96663607_96663709_96663961_96664049_96665266_96665322_96667793_96667888_96668280
transcript_9478.nnic	chr11	+	1202	6	NNC	ENSMUSG00000018666.14	novel	1251	6	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	3	188	junction_5	206.095705923243	209	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679923	96698975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441_96697591_96698628
transcript_9479.known	chr11	+	1251	6	FSM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	0	0	0	0	multi-exon	FALSE	canonical	3	29	junction_5	266.87570140423	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTATCTGTCTTTTGGTGGGG	NA	False	NA	NA	False	ATTAAA	-15	NA	96679984	96699466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441_96697591_96699009
transcript_948.known	chr1	-	1796	13	FSM	ENSMUSG00000026034.18	ENSMUST00000034868.14	1796	13	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_9	59.1577458063514	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463225	58451158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58459279_58459371_58460241_58460468_58460932_58461094_58463078
transcript_9492.nic	chr11	+	1477	5	ISM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	-61	1254	-29	-763	5prime_fragment	FALSE	canonical	3	583	junction_4	77.1508263079534	68	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	AAAAAAAAAAGTCTGTTAAT	NA	False	NA	82	True	NA	NA	NA	96679923	96698212	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441
transcript_9493.nic	chr11	+	2240	5	ISM	ENSMUSG00000018666.14	ENSMUST00000093943.10	1251	6	-61	491	-29	0	5prime_fragment	FALSE	canonical	3	583	junction_4	77.1508263079534	153	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679923	96698975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96697441
transcript_9494.nnic	chr11	+	1053	5	NNC	ENSMUSG00000018666.14	novel	2377	5	NA	NA	-29	0	at_least_one_novel_splicesite	FALSE	canonical	3	147	junction_4	247.637335634189	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679923	96698975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96698628
transcript_9495.known	chr11	+	2377	5	FSM	ENSMUSG00000018666.14	ENSMUST00000134585.8	2377	5	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_4	281.892155797213	122	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TTCTTGATTTCTGTCTTTTT	NA	False	NA	15	True	AATAAA	-16	NA	96679962	96698975	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693825_96697441
transcript_9499.known	chr11	+	1824	4	FSM	ENSMUSG00000018666.14	ENSMUST00000018810.10	1824	4	0	0	0	0	multi-exon	FALSE	canonical	3	611	junction_3	65.5455736279897	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AATAAATCTTAAAAAAAAAA	NA	False	NA	NA	False	NA	NA	NA	96679952	96694795	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553
transcript_9501.nic	chr11	+	595	3	ISM	ENSMUSG00000018666.14	ENSMUST00000018810.10	1824	4	-29	2379	-29	185	5prime_fragment	FALSE	canonical	3	748	junction_1	2	60	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	GAAGAAGAAAGAAGAGGTAA	NA	False	NA	30	True	GATAAA	-21	NA	96679923	96692416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_96680180_96691596_96691774_96692254
transcript_9502.known	chr11	+	814	2	FSM	ENSMUSG00000018666.14	ENSMUST00000141257.2	814	2	0	0	0	0	multi-exon	FALSE	canonical	3	748	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTGCTGTGCTTGCTGGTTT	NA	False	NA	NA	False	TATAAA	-27	NA	96680000	96692231	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_96680180_96691596
transcript_9504.known	chr11	+	912	5	FSM	ENSMUSG00000018666.14	ENSMUST00000079702.4	912	5	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_4	308.662032002642	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATGTTTTATGAAGTAGCTTA	NA	False	NA	NA	False	AATATA	-14	NA	96680074	96699366	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_96680180_96691596_96691774_96692254_96692433_96693553_96693649_96699009
transcript_9505.known	chr11	-	4654	5	FSM	ENSMUSG00000038615.18	ENSMUST00000081775.12	4654	5	0	0	0	0	multi-exon	FALSE	canonical	3	711	junction_4	320.112870719064	140	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCTCCCCCCTCTCCCT	NA	False	NA	-6	True	AATAAA	-33	NA	96720794	96708239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023_96719050_96720644
transcript_9507.nnic	chr11	-	3952	4	NNC	ENSMUSG00000038615.18	novel	4219	4	NA	NA	-35	0	intron_retention	FALSE	canonical	3	150	junction_3	570.471345078397	118	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TGATTCAGCTTAAGTGCACT	NA	False	NA	-23	True	AATAAA	-16	NA	96714874	96708256	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_96711343_96712076_96712236_96712929_96713146_96714383
transcript_9508.known	chr11	-	486	4	FSM	ENSMUSG00000038615.18	ENSMUST00000142065.2	486	4	0	0	0	0	multi-exon	FALSE	canonical	3	378	junction_3	463.171914327955	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTGGAGACCCTCTTAGCA	NA	False	NA	NA	False	AGTAAA	-34	NA	96714834	96711295	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714770
transcript_9509.known	chr11	-	851	4	FSM	ENSMUSG00000038615.18	ENSMUST00000126949.8	851	4	0	0	0	0	multi-exon	FALSE	canonical	3	60	junction_3	612.843826399153	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CTTCCCAGCTCGAAGAGGAG	NA	False	NA	NA	False	NA	NA	NA	96714953	96710918	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96714901
transcript_9512.known	chr11	-	4596	5	FSM	ENSMUSG00000038615.18	ENSMUST00000167149.8	4596	5	0	0	0	0	multi-exon	FALSE	canonical	3	79	junction_4	530.254891538023	133	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ACTTTCTCCCCCCTCTCCCT	NA	False	NA	-6	True	AATAAA	-33	NA	96720328	96708239	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_96711343_96712076_96712236_96712929_96713146_96718023_96719050_96720236
transcript_9514.known	chr11	+	930	9	FSM	ENSMUSG00000018672.16	ENSMUST00000018816.14	930	9	0	0	0	0	multi-exon	FALSE	canonical	3	213	junction_8	11.8420595759353	41	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCTCCTTTCTTGACTTTG	775	False	NA	11	True	AATAAA	-22	NA	96740701	96752029	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_96740823_96741498_96741568_96744260_96744343_96744883_96744976_96745409_96745466_96746081_96746160_96747497_96747550_96748378_96748418_96751688
transcript_9521.known	chr11	-	2250	14	FSM	ENSMUSG00000018669.15	ENSMUST00000103152.11	2250	14	0	0	0	0	multi-exon	FALSE	canonical	3	831	junction_13	105.723262738262	330	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTCACCTTTACTGGCT	NA	False	NA	-13	True	GATAAA	-16	NA	96807322	96798251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96803831_96803881_96804207_96804309_96804490_96804623_96806976_96807023_96807209
transcript_9526.known	chr11	-	2201	13	FSM	ENSMUSG00000018669.15	ENSMUST00000134732.8	2201	13	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_9	315.392733570209	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTTGTCACCTTTACTGGCT	NA	False	NA	-13	True	GATAAA	-16	NA	96807322	96798251	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_96798949_96799055_96799228_96799539_96799746_96800766_96800856_96801482_96801565_96801905_96802008_96802377_96802523_96802698_96802836_96803042_96803222_96804207_96804309_96804490_96804623_96806976_96807023_96807209
transcript_953.known	chr1	-	1705	12	FSM	ENSMUSG00000026034.18	ENSMUST00000148330.8	1705	12	0	0	0	0	multi-exon	FALSE	canonical	3	65	junction_9	47.751422461613	53	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463225	58451158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
transcript_9534.known	chr11	-	1994	7	FSM	ENSMUSG00000018659.13	ENSMUST00000018803.12	1994	7	0	0	0	0	multi-exon	FALSE	canonical	3	181	junction_4	10.434983894999	205	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AATGTTTAACTTGATTCCAT	NA	False	NA	-2	True	AATAAA	-25	NA	96834812	96828650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_96829910_96830080_96830152_96830473_96830603_96830841_96830896_96831681_96831782_96833235_96833361_96834556
transcript_9535.known	chr11	-	3055	7	FSM	ENSMUSG00000018678.14	ENSMUST00000107624.8	3055	7	0	0	0	0	multi-exon	FALSE	canonical	3	58	junction_6	154.880599172395	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CAAAGTCTGCGTTTGGCAGT	NA	False	NA	-17	True	AATAAA	-16	NA	96868537	96844166	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_96845397_96846600_96846795_96846930_96847106_96848249_96848563_96851863_96852836_96854190_96854271_96868446
transcript_9538.nic	chr11	-	1516	3	ISM	ENSMUSG00000018678.14	ENSMUST00000107624.8	3055	7	-72	7396	-72	-6518	5prime_fragment	FALSE	canonical	3	58	junction_2	224.5	36	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TATATAACAGCAAGAATGAG	NA	False	NA	-11	True	AATAAA	-21	NA	96868609	96851562	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_96852836_96854190_96854271_96868446
transcript_9539.known	chr11	+	1242	2	FSM	ENSMUSG00000047040.10	ENSMUST00000062172.6	1242	2	0	0	0	0	multi-exon	FALSE	canonical	3	7	junction_1	0	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AGAAACCACGGTCTTATTTA	NA	False	NA	NA	False	AATAAA	-10	NA	96820219	96826469	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_96820336_96825343
transcript_9540.known	chr11	+	1342	2	FSM	ENSMUSG00000047040.10	ENSMUST00000054311.6	1342	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCACGGTCTTATTTATACAC	NA	False	NA	NA	False	AATAAA	-15	NA	96820127	96826474	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_96820336_96825340
transcript_9544.nnic	chr11	+	1486	8	NNC	ENSMUSG00000020877.12	novel	826	3	NA	NA	-35	0	at_least_one_novel_splicesite	FALSE	canonical	2	9	junction_1	41.1958983494271	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGGATCTCAAGTCTATT	NA	False	NA	17	True	AATAAA	-23	NA	96920924	96924784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_96920999_96921241_96921416_96921705_96921888_96922914_96923115_96923580_96923797_96923889_96924056_96924144_96924326_96924491
transcript_9545.known	chr11	+	1530	8	FSM	ENSMUSG00000020877.12	ENSMUST00000021249.11	1530	8	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_5	16.9597362320652	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGGATCTCAAGTCTATT	NA	False	NA	17	True	AATAAA	-23	NA	96920763	96924784	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_96920882_96921241_96921416_96921705_96921888_96922914_96923115_96923580_96923797_96923889_96924056_96924144_96924326_96924491
transcript_9546.known	chr11	+	605	3	FSM	ENSMUSG00000020877.12	ENSMUST00000133054.8	605	3	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	14	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	AGAGTGCTTTAATTTTTTTT	NA	False	NA	NA	False	GATAAA	-17	NA	96920777	96922032	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_96920882_96921241_96921416_96921705
transcript_9547.known	chr11	-	1336	8	FSM	ENSMUSG00000020878.7	ENSMUST00000021251.7	1336	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	1.24539969815448	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTGGAATGCTTTTCATGTTA	4148	False	NA	NA	False	AATAAA	-13	NA	96932233	96925427	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_96925851_96926284_96926431_96926697_96926768_96926921_96927032_96927295_96927343_96929597_96929707_96931692_96931799_96931908
transcript_9549.known	chr11	+	3771	23	FSM	ENSMUSG00000038534.20	ENSMUST00000090020.13	3771	23	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	33.8534762061397	23	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGACCACTCATTGAA	9941	False	NA	22	True	AATAAA	-18	NA	96941453	96959730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_96941780_96943050_96943203_96943311_96943438_96943595_96943650_96944940_96945055_96945375_96945472_96945584_96945703_96946352_96946457_96946680_96946774_96946856_96946990_96947078_96947174_96947353_96947450_96949285_96949424_96949924_96950019_96950868_96951117_96951276_96951415_96956414_96956479_96956606_96956686_96957758_96957904_96958030_96958176_96958259_96958387_96958490_96958614_96958767
transcript_9556.known	chr11	+	1708	5	FSM	ENSMUSG00000001445.11	ENSMUST00000001485.10	1708	5	0	0	0	0	multi-exon	FALSE	canonical	3	440	junction_1	35.8643276808586	331	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTATGTTTATATCTGTA	873	False	NA	10	True	NA	NA	NA	96932385	96940039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_96932479_96935353_96935524_96937855_96938021_96938238_96938384_96938904
transcript_956.known	chr1	-	4865	11	FSM	ENSMUSG00000026034.18	ENSMUST00000156931.8	4865	11	0	0	0	0	multi-exon	FALSE	canonical	3	126	junction_10	34.9097407609968	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GTTCCTAGTATCCAACATGA	NA	False	NA	NA	False	AATAAA	-23	NA	58463225	58449347	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456171_58456339_58456425_58456543_58458825_58460468_58460932_58461094_58463078
transcript_9560.nnic	chr11	+	1330	4	NIC	ENSMUSG00000001445.11	novel	1708	5	NA	NA	-14	-222	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	229.382262222305	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTTTTTAAGAATTATTTT	859	False	NA	20	True	AATAAA	-21	NA	96932371	96939817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_96932479_96937855_96938021_96938238_96938384_96938904
transcript_9561.nnic	chr11	+	1552	4	NIC	ENSMUSG00000001445.11	novel	1708	5	NA	NA	-14	0	combination_of_known_splicesites	FALSE	canonical	3	40	junction_1	229.382262222305	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCCTATGTTTATATCTGTA	859	False	NA	10	True	NA	NA	NA	96932371	96940039	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_96932479_96937855_96938021_96938238_96938384_96938904
transcript_9562.nic	chr11	+	1450	4	ISM	ENSMUSG00000038534.20	ENSMUST00000143360.2	920	5	230	-633	230	0	3prime_fragment	FALSE	canonical	3	130	junction_3	12.5521135891752	78	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGACCACTCATTGAA	NA	False	NA	22	True	AATAAA	-18	NA	96957938	96959730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_96958176_96958259_96958387_96958490_96958614_96958767
transcript_9563.nnic	chr11	+	1401	4	NNC	ENSMUSG00000038534.20	novel	3771	23	NA	NA	296	0	at_least_one_novel_splicesite	FALSE	canonical	2	6	junction_1	66.0504857413378	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	GCCTGTGACCACTCATTGAA	NA	False	NA	22	True	AATAAA	-18	NA	96958004	96959730	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_96958176_96958242_96958387_96958490_96958614_96958767
transcript_9566.known	chr11	-	5894	22	FSM	ENSMUSG00000001440.6	ENSMUST00000001479.5	5894	22	0	0	0	0	multi-exon	TRUE	canonical	3	682	junction_21	133.681077140662	45	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATTTTGCTGCTTCGTTCTTT	NA	False	NA	-4	True	AATAAA	-25	NA	97078707	97050539	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_97053508_97054178_97054341_97054739_97054855_97055550_97055657_97055778_97055923_97056201_97056310_97056872_97056956_97058375_97058521_97059690_97059763_97059973_97060122_97060727_97060859_97062347_97062540_97063878_97064104_97066574_97066677_97068071_97068183_97069095_97069186_97069693_97069754_97071269_97071423_97072450_97072652_97075752_97075936_97078214_97078274_97078371
transcript_9568.known	chr11	-	4215	23	FSM	ENSMUSG00000001441.14	ENSMUST00000001480.14	4215	23	0	0	0	0	multi-exon	FALSE	canonical	3	268	junction_18	36.1553409289133	9	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	AATTTGTTGGCCTGGTTCTT	NA	False	NA	-2	True	AATAAA	-13	NA	97171464	97096669	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_97098095_97103105_97103154_97103857_97104014_97104596_97104705_97108616_97108674_97109333_97109477_97113776_97113997_97115484_97115620_97117554_97117695_97120655_97120720_97122714_97122825_97125880_97125942_97126890_97126996_97128919_97129085_97131754_97131870_97132629_97132664_97132776_97132874_97133428_97133630_97135253_97135362_97139027_97139150_97149099_97149178_97158420_97158506_97171026
transcript_957.known	chr1	-	1538	11	FSM	ENSMUSG00000026034.18	ENSMUST00000151338.8	1538	11	0	0	0	0	multi-exon	FALSE	canonical	3	9	junction_6	69.2961759406679	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TAAAGGTCTATAGCTTGGTG	NA	False	NA	-12	True	AATAAA	-20	NA	58463225	58451158	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_58451500_58451805_58451897_58452105_58452186_58452548_58452632_58453530_58453661_58453748_58453844_58456425_58456543_58458825_58458893_58460241_58460468_58460932_58461094_58463078
transcript_9571.known	chr11	+	2431	8	FSM	ENSMUSG00000018882.13	ENSMUST00000019026.10	2431	8	0	0	0	0	multi-exon	FALSE	canonical	3	2561	junction_3	172.211545276531	390	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	ATACCCAGCTTAAAATTACT	NA	False	NA	14	True	NA	NA	NA	97206541	97220746	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_97206766_97207572_97207751_97212268_97212387_97214676_97214776_97216534_97216584_97217607_97217758_97218911_97219086_97219307
transcript_9573.known	chr11	+	612	4	FSM	ENSMUSG00000085860.2	ENSMUST00000131687.2	612	4	0	0	0	0	multi-exon	FALSE	canonical	3	87	junction_3	12.3917535302941	104	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTGTGTGTGTGTGTGTGTG	NA	False	NA	29	True	AATATA	-14	NA	97489336	97513719	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_97489494_97505749_97505855_97509262_97509326_97513432
transcript_9575.known	chr11	+	546	4	FSM	ENSMUSG00000078695.9	ENSMUST00000107584.8	546	4	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	467.239410438232	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2325	False	NA	-1	True	AATAAA	-21	NA	97576651	97579447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_97576691_97577008_97577042_97577326_97577447_97579093
transcript_9576.nnic	chr11	+	883	3	NNC	ENSMUSG00000078695.9	novel	737	3	NA	NA	-38	0	intron_retention	FALSE	canonical	3	62	junction_1	514.5	20	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2287	False	NA	-1	True	AATAAA	-21	NA	97576613	97579447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_97577042_97577345_97577447_97579093
transcript_9577.known	chr11	+	737	3	FSM	ENSMUSG00000078695.9	ENSMUST00000107583.3	737	3	0	0	0	0	multi-exon	FALSE	canonical	3	940	junction_1	75.5	599	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTAACTGTTTCTGTGGTCAC	2452	False	NA	-1	True	AATAAA	-21	NA	97576778	97579447	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_97577042_97577326_97577447_97579093
transcript_9581.known	chr11	-	1438	11	FSM	ENSMUSG00000018537.17	ENSMUST00000103148.8	1438	11	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_10	75.0416550990182	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATATACATACTTATTT	NA	False	NA	8	True	NA	NA	NA	97590467	97580645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590031_97590127_97590361
transcript_9585.nic	chr11	-	1746	10	ISM	ENSMUSG00000018537.17	ENSMUST00000103148.8	1438	11	-73	0	-66	0	intron_retention	FALSE	canonical	3	57	junction_9	50.8265022732564	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CCAAATATACATACTTATTT	NA	False	NA	8	True	NA	NA	NA	97590540	97580645	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590031
transcript_9586.known	chr11	-	2347	10	FSM	ENSMUSG00000018537.17	ENSMUST00000169807.8	2347	10	0	0	0	0	multi-exon	FALSE	canonical	3	83	junction_9	43.2000800182158	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AAGCCTGTGGTTCTTTGGGA	NA	False	NA	-3	True	AATAAA	-17	NA	97590474	97579648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_97581185_97581786_97581868_97582509_97582606_97582683_97582739_97582852_97582962_97583194_97583246_97583329_97583386_97583551_97583649_97584241_97584395_97590361
transcript_9590.known	chr11	+	766	6	FSM	ENSMUSG00000069744.8	ENSMUST00000103147.5	766	6	0	0	0	0	multi-exon	FALSE	canonical	3	3867	junction_2	170.920566345891	1159	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	ATGCCTGCCTGCCTGCCTTT	NA	False	NA	22	True	AATAAA	-15	NA	97594224	97604326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_97594317_97594613_97594799_97597623_97597732_97601927_97602106_97603262_97603358_97604218
transcript_9592.known	chr11	-	3105	10	FSM	ENSMUSG00000018541.11	ENSMUST00000018685.9	3105	10	0	0	0	0	multi-exon	FALSE	canonical	3	107	junction_2	12.1969435556112	16	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AACTGTGTAGAGCGATCTAC	7435	False	NA	-21	True	AATAAA	-19	NA	97657382	97636440	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_97638296_97638786_97638949_97641697_97641788_97643395_97643590_97644041_97644106_97644730_97644859_97646976_97647047_97648398_97648636_97654034_97654208_97657250
transcript_9598.known	chr11	-	1838	3	FSM	ENSMUSG00000018541.11	ENSMUST00000107579.2	1838	3	0	0	0	0	multi-exon	FALSE	canonical	3	117	junction_1	9	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	75	AAAAAAAAAAAAAGCCATTA	7451	False	NA	NA	False	NA	NA	NA	97657366	97647086	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_97648636_97654034_97654208_97657250
transcript_9599.known	chr11	-	728	5	FSM	ENSMUSG00000071415.7	ENSMUST00000151118.2	728	5	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_4	6071.74712809254	104	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TGAGAGCTGGTCTTCTTGAC	NA	False	NA	-35	True	ATTAAA	-11	NA	97673102	97668863	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97672828
transcript_9600.known	chr11	-	1059	5	FSM	ENSMUSG00000071415.7	ENSMUST00000103146.5	1059	5	0	0	0	0	multi-exon	FALSE	canonical	3	11120	junction_4	1307.0006455622	345	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTTTCTGTGAGTGCTTGAGA	NA	False	NA	-9	True	AATAAA	-17	NA	97673263	97668352	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_97668991_97669090_97669205_97672159_97672289_97672631_97672716_97673169
transcript_961.known	chr1	-	3561	18	FSM	ENSMUSG00000026037.15	ENSMUST00000027198.12	3561	18	0	0	0	0	multi-exon	FALSE	canonical	3	442	junction_12	52.5802073093293	34	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTTTGTAGTTTTGTTTTGA	NA	False	NA	0	True	AATAAA	-23	NA	58544268	58501929	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_58503450_58505153_58505273_58506809_58506872_58508826_58508999_58510098_58510246_58511463_58511561_58513967_58514101_58515592_58515703_58519409_58519509_58520118_58520313_58522801_58522863_58532015_58532048_58532819_58532910_58536534_58536625_58539399_58539544_58540481_58540586_58541000_58541050_58543930
transcript_9611.known	chr11	+	1859	2	FSM	ENSMUSG00000050538.9	ENSMUST00000164364.2	1859	2	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAACAAACCA	5325	False	NA	NA	False	NA	NA	NA	97732140	97734635	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_97732374_97733009
transcript_9613.known	chr11	+	1118	2	FSM	ENSMUSG00000050538.9	ENSMUST00000170806.2	1118	2	0	0	0	0	multi-exon	FALSE	canonical	3	6	junction_1	0	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAGAAAAAAAGAATGAATGA	5329	False	NA	NA	False	AATAAA	-2	NA	97732144	97733869	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_97732403_97733009
transcript_9614.known	chr11	+	2181	2	FSM	ENSMUSG00000050538.9	ENSMUST00000155954.3	2181	2	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	70	AAAACAAAACAAACAAATCT	5310	False	NA	NA	False	NA	NA	NA	97732125	97734925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_97732391_97733009
transcript_9616.known	chr11	-	1571	6	FSM	ENSMUSG00000038352.16	ENSMUST00000042971.16	1571	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_2	2.57681974534503	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTCACTTCTTATTTTTG	NA	False	NA	3	True	ATTAAA	-26	NA	97887007	97880403	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_97881166_97883107_97883260_97884250_97884335_97885163_97885312_97885892_97885954_97886643
transcript_9618.nnic	chr11	-	1457	5	NIC	ENSMUSG00000038352.16	novel	1571	6	NA	NA	-38	0	combination_of_known_splicesites	FALSE	canonical	0	0	junction_1	3.39116499156263	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGCCTCACTTCTTATTTTTG	NA	False	NA	3	True	ATTAAA	-26	NA	97887045	97880403	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_97881166_97884250_97884335_97885163_97885312_97885892_97885954_97886643
transcript_9619.known	chr11	-	1880	13	FSM	ENSMUSG00000020882.18	ENSMUST00000092736.11	1880	13	0	0	0	0	multi-exon	FALSE	canonical	3	20	junction_6	26.3832596335041	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	GCGTCTGGTGTCTGTGGTTT	NA	False	NA	NA	False	NA	NA	NA	97913460	97895750	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_97896141_97896513_97896610_97900106_97900259_97900394_97900505_97900683_97900743_97901121_97901203_97902168_97902324_97902691_97902769_97903010_97903148_97903637_97903761_97907548_97907669_97910505_97910593_97913167
transcript_9629.known	chr11	+	751	6	FSM	ENSMUSG00000017404.13	ENSMUST00000017548.7	751	6	0	0	0	0	multi-exon	FALSE	canonical	3	9068	junction_1	2898.60244945732	9061	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917749	97921318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_97917817_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
transcript_9639.known	chr11	+	737	6	FSM	ENSMUSG00000017404.13	ENSMUST00000092425.11	737	6	0	0	0	0	multi-exon	FALSE	canonical	3	78	junction_1	6391.5163271324	729	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	AGTTTTGGCTGCTGTGTCTT	NA	False	NA	15	True	AATAAA	-33	NA	97917535	97921318	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_97917589_97918648_97918756_97919171_97919295_97920220_97920342_97920600_97920712_97921096
transcript_9640.known	chr11	-	3050	11	FSM	ENSMUSG00000017400.11	ENSMUST00000017544.9	3050	11	0	0	0	0	multi-exon	FALSE	canonical	3	31	junction_9	5.98748695196908	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCCTGCCTGCTTGGTGTATC	5359	False	NA	-2	True	ATTAAA	-15	NA	97944288	97927448	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_97928897_97930444_97930583_97930923_97930976_97931247_97931346_97931964_97932027_97932129_97932203_97932292_97932406_97933354_97933446_97933582_97933681_97934305_97934613_97943718
transcript_9642.nic	chr11	-	2510	15	NIC	ENSMUSG00000020883.19	novel	8601	15	NA	NA	-65	2388	combination_of_known_junctions	TRUE	canonical	3	15	junction_14	36.7548414137095	16	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTTTTACCATCAGGGGACCC	2309	False	NA	-15	True	AATAAA	-17	NA	98041294	97979528	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_97980525_97981483_97981697_97982970_97983028_97983938_97983984_97985958_97986020_97987754_97987886_97989245_97989321_97990808_97990936_97992526_97992623_98000319_98000389_98001760_98001856_98004046_98004122_98006218_98006274_98019140_98019203_98040941
transcript_9643.known	chr11	-	2627	18	FSM	ENSMUSG00000018160.16	ENSMUST00000092735.12	2627	18	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_1	53.6447367918524	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTCTGTGTTTTTTAT	NA	False	NA	NA	False	AATAAA	-42	NA	98084086	98042979	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_98043790_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
transcript_9644.nic	chr11	-	2824	18	NIC	ENSMUSG00000018160.16	novel	2627	18	NA	NA	-2	0	combination_of_known_junctions	TRUE	canonical	3	22	junction_1	56.1624559050546	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGCCTCTGTGTTTTTTAT	NA	False	NA	NA	False	AATAAA	-42	NA	98084121	98042979	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_98043952_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
transcript_9645.nic	chr11	-	2528	18	NIC	ENSMUSG00000018160.16	novel	8024	17	NA	NA	-2	294	combination_of_known_junctions	FALSE	canonical	3	134	junction_1	37.2323667653306	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCAGCTGACCTTATTGCAG	NA	False	NA	-8	True	AATGAA	-15	NA	98084121	98048284	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_98048961_98049154_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
transcript_9646.known	chr11	-	8024	17	FSM	ENSMUSG00000018160.16	ENSMUST00000107545.9	8024	17	0	0	0	0	multi-exon	FALSE	canonical	3	176	junction_3	32.1266414950271	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	ATGTGCCTCTGTGTTTTTTA	NA	False	NA	NA	False	AATAAA	-41	NA	98084119	98042980	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_98049296_98051762_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
transcript_9648.nic	chr11	-	2158	16	ISM	ENSMUSG00000018160.16	ENSMUST00000107545.9	8024	17	-2	8335	-2	-2737	5prime_fragment	FALSE	canonical	3	176	junction_2	32.5798847279865	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CACTCACTGTTGCCTCCATA	NA	False	NA	NA	False	AATAAA	-18	NA	98084121	98051315	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_98051869_98051969_98052066_98054625_98054828_98057081_98057201_98057524_98057650_98058344_98058457_98060188_98060279_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
transcript_9649.known	chr11	-	1372	10	FSM	ENSMUSG00000018160.16	ENSMUST00000129557.2	1372	10	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_1	68.4675285747617	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	ATTTAGGACTTTGCATATTT	NA	False	NA	NA	False	AATAAA	-15	NA	98084102	98060736	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_98061267_98061773_98061848_98062521_98062597_98064046_98064119_98069937_98069967_98070842_98070976_98071079_98071135_98074667_98074747_98080007_98080115_98083884
transcript_9650.known	chr11	+	2001	7	FSM	ENSMUSG00000061718.13	ENSMUST00000078694.13	2001	7	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_1	2.21108319357027	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTCCTGAGACTCCTCTTTCA	NA	False	NA	NA	False	AATAAA	-16	NA	98239229	98248622	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_98240001_98241394_98241456_98241710_98241734_98242091_98242168_98246152_98246336_98247650_98247774_98247858
transcript_9652.nic	chr11	+	2070	15	NIC	ENSMUSG00000018167.11	novel	2170	16	NA	NA	0	0	combination_of_known_junctions	FALSE	canonical	3	18	junction_4	34.185344156554	8	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGGTGTGATGGTGCATTCCT	875	False	NA	11	True	AATAAA	-14	NA	98249193	98271938	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_98249335_98262895_98263169_98265905_98265984_98266301_98266367_98266500_98266555_98267315_98267434_98267577_98267677_98267890_98267947_98268275_98268369_98268981_98269045_98269160_98269257_98269563_98269644_98269719_98269825_98270798_98270893_98271283
transcript_9653.known	chr11	+	2070	15	FSM	ENSMUSG00000018167.11	ENSMUST00000018311.5	2070	15	0	0	0	0	multi-exon	TRUE	canonical	3	120	junction_11	11.573412528335	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	AAATAAAAATGCAGGGTGTG	875	False	NA	-2	True	AATAAA	-1	NA	98249193	98271925	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_98249335_98262895_98263169_98265905_98265984_98266301_98266380_98266500_98266555_98267315_98267434_98267577_98267677_98267890_98267947_98268275_98268369_98268981_98269045_98269160_98269257_98269563_98269644_98269719_98269825_98270798_98270893_98271283
transcript_9655.known	chr11	-	2419	8	FSM	ENSMUSG00000038208.14	ENSMUST00000090827.12	2419	8	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_7	8.7084289452161	8	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CCCTGACTCTGCTACTCTAT	NA	False	NA	NA	False	AATAAA	-21	NA	98291316	98279502	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_98280928_98281112_98281318_98281502_98281640_98281905_98281968_98282520_98282584_98288721_98288875_98289710_98289809_98291040
transcript_9656.known	chr11	-	747	4	FSM	ENSMUSG00000002580.8	ENSMUST00000002655.8	747	4	0	0	0	0	multi-exon	FALSE	canonical	3	749	junction_2	62.9567752950829	403	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGGCGTGTGTTTATGTCCA	NA	False	NA	1	True	AATAAA	-26	NA	98329817	98328533	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_98328972_98329062_98329140_98329472_98329571_98329683
transcript_9659.known	chr11	+	2397	15	FSM	ENSMUSG00000019312.11	ENSMUST00000019456.5	2397	15	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_1	7.18736135624932	30	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCTGTGAGTCCTGTCTGGCA	NA	False	NA	18	True	AATAAA	-18	NA	98337659	98346199	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_98338076_98341591_98341749_98341853_98342005_98342131_98342289_98342420_98342543_98342667_98342746_98342944_98343095_98344006_98344118_98344320_98344420_98344618_98344700_98344797_98344915_98345046_98345108_98345223_98345312_98345408_98345503_98345684
transcript_9663.known	chr11	-	863	3	FSM	ENSMUSG00000018168.9	ENSMUST00000140876.2	863	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACCCTCTTTGGCAGCATGCT	4958	False	NA	NA	False	AATAAA	-21	NA	98379846	98375092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_98375670_98376399_98376517_98379677
transcript_9664.known	chr11	-	2184	4	FSM	ENSMUSG00000038150.8	ENSMUST00000052919.8	2184	4	0	0	0	0	multi-exon	FALSE	canonical	3	195	junction_2	8.33999733546454	134	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTCTGGCCTCTGCTTCCTG	1323	False	NA	1	True	AATAAA	-23	NA	98478194	98472081	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_98473674_98473961_98474114_98474767_98474967_98477953
transcript_9665.known	chr11	-	1311	1	FSM	ENSMUSG00000078134.2	ENSMUST00000104933.2	1311	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	5900	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	75	GAAAAAGAAAAAAGAAAGGA	NA	False	NA	NA	False	ATTAAA	-32	NA	98516487	98515176	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_98515200_98516500
transcript_9667.known	chr11	+	2148	12	FSM	ENSMUSG00000017221.15	ENSMUST00000017365.15	2148	12	0	0	0	0	multi-exon	FALSE	canonical	3	1019	junction_3	95.9435956889203	944	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTCCTTGTGCACGGTGTCAG	NA	False	NA	16	True	AATAAA	-14	NA	98573379	98586805	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_98573764_98576307_98576499_98576759_98576898_98578503_98578641_98581288_98581480_98581741_98581846_98584208_98584324_98584404_98584525_98584630_98584735_98584963_98585120_98586188_98586240_98586348
transcript_9669.known	chr11	-	3410	26	FSM	ENSMUSG00000017210.15	ENSMUST00000017354.13	3410	26	0	0	0	0	multi-exon	TRUE	canonical	3	102	junction_19	25.7353919729232	26	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGCTTGTGTGGGGACAGTT	NA	False	NA	-2	True	AATAAA	-23	NA	98620261	98595416	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_98595843_98595944_98596094_98596347_98596429_98597204_98597305_98597651_98597743_98597943_98598126_98598362_98598628_98600407_98600584_98600888_98600989_98601100_98601280_98601598_98601682_98602088_98602127_98603358_98603502_98603979_98604086_98604858_98604946_98605227_98605311_98605906_98605955_98606467_98606582_98606956_98607108_98607239_98607352_98608735_98608969_98609322_98609397_98609643_98609683_98619440_98619524_98619610_98619814_98620197
transcript_9674.known	chr11	-	2721	8	FSM	ENSMUSG00000020889.12	ENSMUST00000064941.7	2721	8	0	0	0	0	multi-exon	FALSE	canonical	3	30	junction_7	7.40104791256493	10	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGGCTTCTGTGATGTGTG	NA	False	NA	0	True	NA	NA	NA	98666159	98658757	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_98659246_98659874_98660086_98660528_98660715_98661013_98661658_98662025_98662171_98662262_98662352_98662618_98662961_98665543
transcript_9676.nic	chr11	+	1453	3	ISM	ENSMUSG00000058756.14	ENSMUST00000064187.12	2452	10	21502	0	9727	0	3prime_fragment	FALSE	canonical	3	46	junction_2	2	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCGTGTGCCTCCTCCAGG	7375	False	NA	29	True	NA	NA	NA	98654138	98659832	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_98654614_98655103_98655232_98658982
transcript_9679.known	chr11	+	2077	3	FSM	ENSMUSG00000038020.6	ENSMUST00000139889.2	2077	3	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	0.5	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	AACCAACTTCCTTATGTTCT	237	False	NA	NA	False	AATACA	-13	NA	98741157	98743825	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_98741256_98741610_98741666_98741901
transcript_9681.known	chr11	+	4614	12	FSM	ENSMUSG00000017499.16	ENSMUST00000092706.13	4614	12	0	0	0	0	multi-exon	FALSE	canonical	3	550	junction_4	61.3919799860826	44	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCCCAAGATGCCTCTGCCAT	17	False	NA	NA	False	AATAAA	-18	NA	98798626	98814762	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_98798808_98799462_98799657_98801012_98801298_98801403_98801604_98802213_98802390_98802984_98803092_98804700_98804841_98805913_98806015_98807779_98807845_98810028_98810232_98811498_98811640_98811941
transcript_9686.known	chr11	+	2380	9	FSM	ENSMUSG00000037992.17	ENSMUST00000107474.8	2380	9	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	86.2060576467803	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATACTGAAGGAATTTGT	8806	False	NA	6	True	NA	NA	NA	98818643	98864988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_98818737_98841070_98841622_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
transcript_9687.known	chr11	+	2469	9	FSM	ENSMUSG00000037992.17	ENSMUST00000107475.9	2469	9	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_2	61.7220331405245	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATACTGAAGGAATTTGT	NA	False	NA	6	True	NA	NA	NA	98828523	98864988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_98828706_98841070_98841622_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
transcript_9688.known	chr11	+	3238	8	FSM	ENSMUSG00000037992.17	ENSMUST00000107473.3	3238	8	0	0	0	0	multi-exon	FALSE	canonical	3	97	junction_1	54.9043695521437	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCCTCTTGCCTCTCTGCCT	7438	False	NA	14	True	AATAAA	-19	NA	98851237	98865768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_98851960_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
transcript_9689.nnic	chr11	+	1910	8	NNC	ENSMUSG00000037992.17	novel	2380	9	NA	NA	4494	0	at_least_one_novel_splicesite	FALSE	canonical	2	2	junction_1	87.8077677750246	7	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TTTATACTGAAGGAATTTGT	NA	False	NA	6	True	NA	NA	NA	98855731	98864988	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_98855906_98857172_98857322_98858870_98859013_98860982_98861144_98861318_98861496_98862407_98862613_98863337_98863497_98864245
transcript_9693.nic	chr11	-	5147	36	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	-23	-9	combination_of_known_junctions	FALSE	canonical	3	459	junction_1	255.273980064477	37	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGCAAGCCATCCATTCCTCT	NA	False	NA	-9	True	AATAAA	-13	NA	98915038	98883777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_98884152_98884589_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
transcript_9698.nic	chr11	-	848	5	ISM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	-23	25626	-23	-1976	5prime_fragment	FALSE	canonical	3	1379	junction_1	89.0182565544844	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAATCCTTTAACTCACTA	NA	False	NA	NA	False	NA	NA	NA	98915038	98909394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
transcript_9699.nic	chr11	-	1413	4	NIC	ENSMUSG00000020914.18	novel	5221	36	NA	NA	-23	-1976	intron_retention	FALSE	canonical	3	1379	junction_1	98.0034013015195	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	CAAAATCCTTTAACTCACTA	NA	False	NA	NA	False	NA	NA	NA	98915038	98909394	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_98909768_98912536_98913257_98913665_98913819_98914871
transcript_97.known	SIRV3	+	779	5	FSM	SIRV3A	SIRV307	779	5	0	0	0	0	multi-exon	FALSE	canonical	3	1252	junction_4	794.143052289699	279	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	AGGTTAACGTCTCGTAAGAC	NA	False	NA	NA	False	NA	NA	NA	1963	8939	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV3_+_2006_4003_4081_4574_4775_6057_6334_8755
transcript_9700.known	chr11	-	632	3	FSM	ENSMUSG00000020914.18	ENSMUST00000129777.2	632	3	0	0	0	0	multi-exon	FALSE	canonical	3	1518	junction_2	50	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	40	AGCAGTCCAATAAAGTCCAG	NA	False	NA	NA	False	AAAAAG	-6	NA	98915004	98912910	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_98913257_98913665_98913819_98914871
transcript_9701.known	chr11	-	5221	36	FSM	ENSMUSG00000020914.18	ENSMUST00000068031.8	5221	36	0	0	0	0	multi-exon	FALSE	canonical	3	1094	junction_4	183.786113485769	129	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCATTCCTCTTATTTTAAC	NA	False	NA	0	True	AATAAA	-22	NA	98915015	98883768	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_98884240_98884589_98884762_98885032_98885233_98886069_98886205_98886506_98886551_98886675_98886800_98887554_98887702_98888654_98888746_98889987_98890174_98891593_98891678_98891799_98891959_98892175_98892268_98893699_98893896_98894332_98894534_98894651_98894787_98894937_98895170_98896828_98896978_98897785_98897908_98898006_98898122_98900055_98900149_98900415_98900526_98900618_98900725_98900853_98900965_98901299_98901426_98901731_98901890_98902846_98902986_98905240_98905379_98905513_98905616_98905711_98905886_98906853_98907067_98907255_98907354_98909621_98909768_98912536_98912601_98913165_98913257_98913665_98913819_98914871
transcript_9703.known	chr11	-	2919	11	FSM	ENSMUSG00000037935.17	ENSMUST00000103133.4	2919	11	0	0	0	0	multi-exon	FALSE	canonical	3	598	junction_2	51.2922021363872	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GGTCTCAGTGTTTTTATTGC	NA	False	NA	-2	True	AATAAA	-15	NA	99121843	99099872	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99115863_99115969_99119100_99119145_99119322_99119375_99121227
transcript_9706.nic	chr11	-	1607	10	NIC	ENSMUSG00000037935.17	novel	2919	11	NA	NA	262	0	combination_of_known_junctions	FALSE	canonical	3	48	junction_7	198.840962568234	59	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TTATGTGGTCTGTGTATTAA	NA	False	NA	-1	True	AATGAA	-36	NA	99121581	99100817	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_99101104_99103945_99104157_99104859_99104962_99105939_99106113_99110045_99110218_99110440_99110573_99111480_99111562_99119100_99119145_99119322_99119375_99121227
transcript_9708.known	chr11	-	3072	6	FSM	ENSMUSG00000035849.15	ENSMUST00000103132.10	3072	6	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_1	1.35646599662505	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTCTAAGGCTTCCTTGTATT	6814	False	NA	NA	False	AATAAA	-19	NA	99134893	99123586	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_99125974_99126962_99127096_99127290_99127368_99129359_99129581_99131318_99131448_99134768
transcript_9709.known	chr11	-	2094	8	FSM	ENSMUSG00000019761.11	ENSMUST00000103131.5	2094	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	28.6940227011744	62	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCTGTCAGAATTATTATTTA	5072	False	NA	NA	False	AATAAA	-38	NA	99280190	99276079	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_99276463_99276756_99277096_99277356_99277575_99277823_99277950_99278055_99278218_99278323_99278481_99278835_99278919_99279564
transcript_9710.known	chr11	-	557	2	FSM	ENSMUSG00000019761.11	ENSMUST00000211768.2	557	2	0	0	0	0	multi-exon	FALSE	canonical	3	10	junction_1	0	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	50	CAAACTATAAAAATCTGTCA	8339	False	NA	NA	False	AATAAA	-25	NA	99276923	99276092	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_99276463_99276736
transcript_9711.known	chr11	-	1654	8	FSM	ENSMUSG00000044041.5	ENSMUST00000007275.3	1654	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_4	0.494871659305394	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGTTTTTGTTTCTGGCCTGG	3818	False	NA	NA	False	AATAAA	-21	NA	100012392	100008152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100008493_100008808_100008832_100009558_100009780_100009869_100009996_100010106_100010269_100010447_100010605_100010798_100010882_100011850
transcript_9712.known	chr11	-	1576	6	FSM	ENSMUSG00000020911.15	ENSMUST00000007317.8	1576	6	0	0	0	0	multi-exon	FALSE	canonical	2	8	junction_5	2.56124969497314	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GGATACCTTGCTTATTTCAG	9599	False	NA	NA	False	AATAAA	-21	NA	100036946	100031635	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100031994_100032105_100032232_100032348_100032511_100032877_100033035_100033251_100033335_100036256
transcript_9713.nnic	chr11	-	1854	9	NNC	ENSMUSG00000053797.11	novel	1565	8	NA	NA	-5503	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_8	1.26861144563653	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTTGTGTGATGTCTATGTTT	741	False	NA	NA	False	AATAAA	-20	NA	100145231	100136916	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_100137155_100137294_100137342_100137435_100137657_100137927_100138054_100138139_100138302_100138387_100138545_100138682_100138766_100139197_100139969_100145182
transcript_9715.known	chr11	-	1551	8	FSM	ENSMUSG00000035557.10	ENSMUST00000080893.7	1551	8	0	0	0	0	multi-exon	FALSE	canonical	3	34	junction_4	2.1946130708196	20	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TAGGTGGACTGGTGTGTGTG	NA	False	NA	48	True	AATAAA	-16	NA	100151855	100147042	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100147323_100148145_100148172_100148258_100148480_100148568_100148695_100149234_100149397_100149998_100150156_100150520_100150604_100151359
transcript_9717.nnic	chr11	-	1493	9	NNC	ENSMUSG00000053654.8	novel	1542	8	NA	NA	-1444	0	at_least_one_novel_splicesite	TRUE	canonical	3	10	junction_8	27.8632262130572	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGAATTCATCATTTGT	NA	False	NA	-11	True	AATAAA	-18	NA	100162141	100153712	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425_100156588_100157760_100157918_100158025_100158109_100160235_100160370_100161862
transcript_9718.nnic	chr11	-	1338	9	NNC	ENSMUSG00000053654.8	novel	1542	8	NA	NA	-1895	0	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_8	29.6858552175948	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGAATTCATCATTTGT	NA	False	NA	-11	True	AATAAA	-18	NA	100162592	100153712	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425_100156588_100157760_100157918_100158025_100158109_100160235_100160370_100162468
transcript_9720.known	chr11	-	1542	8	FSM	ENSMUSG00000053654.8	ENSMUST00000017270.8	1542	8	0	0	0	0	multi-exon	FALSE	canonical	3	51	junction_5	18.9510648023497	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TCCTTGAATTCATCATTTGT	NA	False	NA	-11	True	AATAAA	-18	NA	100160697	100153712	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425_100156588_100157760_100157918_100158025_100158109_100160235
transcript_9722.known	chr11	-	1062	5	FSM	ENSMUSG00000053654.8	ENSMUST00000107406.2	1062	5	0	0	0	0	multi-exon	FALSE	canonical	3	72	junction_1	11.3688170009021	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GAATTCATCATTTGTCCTGT	NA	False	NA	-6	True	AATAAA	-23	NA	100156804	100153707	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100153994_100154119_100154170_100155303_100155525_100155754_100155881_100156425
transcript_9724.known	chr11	+	1322	4	FSM	ENSMUSG00000035530.14	ENSMUST00000049385.14	1322	4	0	0	0	0	multi-exon	FALSE	canonical	3	11207	junction_1	646.711854091312	1700	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GCCTGATGTCCAGATTGCAC	3957	False	NA	21	True	AATAAA	-17	NA	100210710	100212922	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_100210987_100211491_100211656_100211773_100211876_100212142
transcript_9736.known	chr11	+	460	3	FSM	ENSMUSG00000017165.2	ENSMUST00000017309.2	460	3	0	0	0	0	multi-exon	FALSE	canonical	1	1	junction_2	1	3	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATCCCTGAGTCATGTCATGT	NA	False	NA	NA	False	ATTAAA	-21	NA	100225232	100227822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_100225285_100227303_100227520_100227630
transcript_9739.known	chr11	-	3205	14	FSM	ENSMUSG00000001552.15	ENSMUST00000001592.15	3205	14	0	0	0	0	multi-exon	FALSE	canonical	3	399	junction_13	65.0294425807792	54	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TGGAGGCTGTTAAAAGCATT	NA	False	NA	-17	True	AATAAA	-18	NA	100288575	100261444	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100262276_100263121_100263288_100263481_100263522_100264903_100265026_100265151_100265303_100267548_100267825_100268914_100269254_100270347_100270452_100271369_100271515_100272501_100272704_100273832_100274072_100274220_100274481_100276998_100277215_100288461
transcript_9740.known	chr11	+	2584	10	FSM	ENSMUSG00000001555.11	ENSMUST00000001595.10	2584	10	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_4	6.35959467611297	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	GACCTCCAGAAGTGGACAGA	NA	False	NA	13	True	AATAAA	-14	NA	100306522	100315650	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_100306852_100311225_100311372_100311716_100311907_100312019_100312166_100312469_100312660_100312769_100312916_100313451_100313645_100313910_100314054_100314261_100314426_100314713
transcript_9744.known	chr11	-	1427	9	FSM	ENSMUSG00000017176.18	ENSMUST00000107399.9	1427	9	0	0	0	0	multi-exon	FALSE	canonical	1	4	junction_1	186.778612265966	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AGTGGGGCTAGACTCTGTGT	NA	False	NA	NA	False	AATACA	-15	NA	100331915	100313146	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100313772_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654_100331754_100331869
transcript_9746.known	chr11	-	1399	9	FSM	ENSMUSG00000017176.18	ENSMUST00000092688.12	1399	9	0	0	0	0	multi-exon	FALSE	canonical	3	274	junction_8	92.107868149252	390	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATGCACGCGTCTTTAATCCC	NA	False	NA	-2	True	ATTAAA	-19	NA	100331915	100320178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331654_100331754_100331869
transcript_9750.known	chr11	-	1344	8	FSM	ENSMUSG00000017176.18	ENSMUST00000092689.9	1344	8	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_7	183.081112836772	43	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TGGATGCACGCGTCTTTAAT	NA	False	NA	-5	True	ATTAAA	-16	NA	100331846	100320181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100320776_100321902_100322104_100323743_100323907_100325520_100325611_100326980_100327067_100330865_100330913_100331010_100331081_100331753
transcript_9756.nnic	chr11	+	1328	4	NNC	ENSMUSG00000001558.6	novel	2017	5	NA	NA	-810	0	at_least_one_novel_splicesite	FALSE	canonical	3	16	junction_1	6.59966329107444	25	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TGTAAGAGTACTGGAAAATG	NA	False	NA	NA	False	AATAAA	-16	NA	100331932	100347848	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_100332042_100337946_100338565_100347109_100347260_100347397
transcript_9757.known	chr11	-	2393	2	FSM	ENSMUSG00000048732.6	ENSMUST00000056665.4	2393	2	0	0	0	0	multi-exon	FALSE	canonical	3	21	junction_1	0	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGGTCTAGTTACTTGGCC	7694	False	NA	-8	True	ATTAAA	-16	NA	100363567	100353439	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100355272_100363006
transcript_9758.known	chr11	-	4426	29	FSM	ENSMUSG00000020917.18	ENSMUST00000107389.8	4426	29	0	0	0	0	multi-exon	FALSE	canonical	3	1365	junction_16	642.699119466695	41	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CGTGATGCTCTTTTATGTTC	NA	False	NA	-14	True	AATAAA	-18	NA	100418826	100367178	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100393985_100394016_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
transcript_9759.known	chr11	-	4393	28	FSM	ENSMUSG00000020917.18	ENSMUST00000007131.16	4393	28	0	0	0	0	multi-exon	FALSE	canonical	3	2198	junction_15	363.337822300204	54	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	NA	False	NA	-17	True	AATAAA	-15	NA	100418826	100367181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100386685_100386791_100389010_100389180_100389446_100389589_100395028_100395120_100395680_100395836_100403701_100403820_100405101_100405164_100405787_100405925_100406727_100406847_100407601_100407733_100409914_100409995_100410440_100410632_100411116_100411180_100412807_100412931_100414265_100414448_100418620
transcript_9761.nnic	chr11	-	2415	13	NNC	ENSMUSG00000020917.18	novel	4393	28	NA	NA	-44	0	at_least_one_novel_splicesite	FALSE	canonical	3	22	junction_12	1050.92835943592	34	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGGCGTGATGCTCTTTTATG	1705	False	NA	-17	True	AATAAA	-15	NA	100385069	100367181	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_100368165_100368840_100368918_100369153_100369237_100370009_100370124_100372202_100372347_100372522_100372674_100372970_100373126_100374534_100374629_100375425_100375554_100383330_100383442_100384362_100384445_100384709_100384907_100384973
transcript_9763.known	chr11	+	2240	12	FSM	ENSMUSG00000006784.15	ENSMUST00000092684.12	2240	12	0	0	0	0	multi-exon	FALSE	canonical	2	3	junction_1	9.12538915733062	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGAGTGACACTGTGC	NA	False	NA	NA	False	ATTAAA	-22	NA	100436432	100462789	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_100436735_100440628_100440761_100441010_100441162_100441781_100441844_100442296_100442463_100444315_100444541_100444689_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100460681_100460767_100462265
transcript_9764.nic	chr11	+	2075	11	ISM	ENSMUSG00000006784.15	ENSMUST00000092684.12	2240	12	4059	0	119	0	3prime_fragment	FALSE	canonical	3	16	junction_2	6.19354502688081	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATCTTGAGTGACACTGTGC	NA	False	NA	NA	False	ATTAAA	-22	NA	100440491	100462789	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_100440761_100441010_100441162_100441781_100441844_100442296_100442463_100444315_100444541_100444689_100444898_100452643_100452731_100454355_100454553_100457734_100457836_100460681_100460767_100462265
transcript_9770.known	chr11	-	1399	13	FSM	ENSMUSG00000014195.17	ENSMUST00000239389.2	1399	13	0	0	0	0	multi-exon	FALSE	canonical	3	96	junction_12	702.16860016349	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	TGAAGGCCAACTACTTAAAA	5943	False	NA	NA	False	NA	NA	NA	100510433	100473924	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100510353
transcript_9774.known	chr11	+	2357	4	FSM	ENSMUSG00000006782.17	ENSMUST00000103120.5	2357	4	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_2	8.2192186706253	23	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GCTGTGTGCTATCACTCTTG	NA	False	NA	19	True	AATAAA	-15	NA	100465729	100472554	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_100465895_100467061_100467732_100469738_100469879_100471172
transcript_9776.known	chr11	+	2097	4	FSM	ENSMUSG00000017837.13	ENSMUST00000017981.10	2097	4	0	0	0	0	multi-exon	FALSE	canonical	3	328	junction_1	10.0332779621949	156	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GTTTCCCGTCCCCTACCCCT	NA	False	NA	17	True	AATAAA	-24	NA	100513701	100518433	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_100513835_100515017_100515126_100515768_100516011_100516819
transcript_9777.known	chr11	-	2330	14	FSM	ENSMUSG00000014195.17	ENSMUST00000014339.15	2330	14	0	0	0	0	multi-exon	FALSE	canonical	3	2240	junction_1	249.671049855795	1554	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	5382	False	NA	-21	True	AATAAA	-15	NA	100510994	100473643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490010_100490136_100492553_100492643_100510353
transcript_9778.known	chr11	-	1771	14	FSM	ENSMUSG00000014195.17	ENSMUST00000239499.2	1771	14	0	0	0	0	multi-exon	FALSE	canonical	3	66	junction_11	720.895014063612	71	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTTTGGTCCTTGGCTTTGGC	5919	False	NA	-21	True	AATAAA	-15	NA	100510457	100473643	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100473963_100474419_100474483_100475036_100475190_100475377_100475525_100475807_100475882_100480723_100480816_100481712_100481878_100482237_100482392_100483680_100483800_100486991_100487067_100489440_100489555_100490032_100490136_100492553_100492643_100510353
transcript_9779.known	chr11	-	1049	5	FSM	ENSMUSG00000014195.17	ENSMUST00000154972.9	1049	5	0	0	0	0	multi-exon	FALSE	canonical	3	33	junction_1	1222.31570696772	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	CTGTGGCTCCTTTTGTTTTG	5930	False	NA	NA	False	NA	NA	NA	100510446	100488252	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100488881_100489440_100489555_100490010_100490136_100492553_100492643_100510353
transcript_9780.known	chr11	-	2946	18	FSM	ENSMUSG00000020918.15	ENSMUST00000153526.8	2946	18	0	0	0	0	multi-exon	FALSE	canonical	3	22	junction_12	124.621058832359	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATTGTTTTTTGGGGGG	7071	False	NA	-1	True	AATAAA	-18	NA	100602999	100595571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100596822_100596908_100597024_100597175_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599809_100599901_100600004_100600208_100600316_100601075_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
transcript_9781.known	chr11	-	3046	18	FSM	ENSMUSG00000020918.15	ENSMUST00000103118.4	3046	18	0	0	0	0	multi-exon	FALSE	canonical	3	120	junction_10	104.829867108865	21	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGTGATTGTTTTTTGGGGGG	6779	False	NA	-1	True	AATAAA	-18	NA	100603291	100595571	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100596258_100596401_100596487_100596586_100596651_100596784_100596822_100596908_100597024_100597175_100597320_100597683_100597795_100599034_100599162_100599372_100599582_100599671_100599812_100599901_100600004_100600208_100600316_100601270_100601463_100601547_100601730_100601965_100602056_100602158_100602305_100602638_100602763_100602906
transcript_9783.known	chr11	-	1915	6	FSM	ENSMUSG00000019173.12	ENSMUST00000107364.8	1915	6	0	0	0	0	multi-exon	FALSE	canonical	3	116	junction_2	14.961283367412	18	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TTTGAAGATTGTTGGTGTCT	NA	False	NA	-10	True	ATTAAA	-17	NA	100629041	100605834	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100606989_100607583_100607678_100608667_100608791_100609256_100609409_100610740_100610995_100628903
transcript_9787.nnic	chr11	-	828	3	NNC	ENSMUSG00000045471.5	novel	586	2	NA	NA	-719	0	at_least_one_novel_splicesite	FALSE	canonical	1	1	junction_1	0	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	TCTATGTTTCTGTGTGTCAA	NA	False	NA	NA	False	AATAAA	-26	NA	100654476	100652516	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_100652992_100653646_100653838_100654314
transcript_9789.known	chr11	-	2462	9	FSM	ENSMUSG00000017747.14	ENSMUST00000017891.14	2462	9	0	0	0	0	multi-exon	FALSE	canonical	3	37	junction_7	5.82961190818051	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TATTAATGTATGTATTTTAT	NA	False	NA	NA	False	NA	NA	NA	100661783	100656857	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100657851_100658109_100658196_100658839_100658974_100659043_100659116_100659210_100659404_100659853_100660356_100660481_100660604_100660895_100661177_100661704
transcript_9792.known	chr11	-	6042	24	FSM	ENSMUSG00000004040.17	ENSMUST00000103114.8	6042	24	0	0	0	0	multi-exon	FALSE	canonical	3	67	junction_2	102.13864331127	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	60	ACAAAATATAAAAAGCATCC	NA	False	NA	NA	False	CATAAA	-16	NA	100830230	100775923	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100779587_100780303_100780367_100780711_100780755_100783899_100784113_100784490_100784631_100784716_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
transcript_9793.known	chr11	-	2927	24	FSM	ENSMUSG00000004040.17	ENSMUST00000092671.12	2927	24	0	0	0	0	multi-exon	FALSE	canonical	3	73	junction_3	102.661666503989	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	90	AAAAAAAAAAAAAATAAGAA	NA	False	NA	NA	False	TTTAAA	-3	NA	100830206	100779061	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100779587_100780303_100780417_100780711_100780755_100783902_100784113_100784490_100784631_100784716_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
transcript_9798.nic	chr11	-	2060	17	ISM	ENSMUSG00000004040.17	ENSMUST00000092671.12	2927	24	-99	6252	0	0	5prime_fragment	FALSE	canonical	3	434	junction_9	49.3159060927608	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	85	AAAAAAAAAAAAAAAAAGGC	NA	False	NA	NA	False	TTTAAA	-42	NA	100830305	100785313	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_-_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
transcript_98.known	SIRV3	+	2018	3	FSM	SIRV3A	SIRV303	2018	3	0	0	0	0	multi-exon	FALSE	canonical	3	1857	junction_1	482	239	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	TCATTTAACAGGTTCTCAAC	NA	False	NA	NA	False	NA	NA	NA	1963	7822	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV3_+_2006_4568_4780_6057
transcript_9800.known	chr11	-	4516	24	FSM	ENSMUSG00000004040.17	ENSMUST00000127638.8	4516	24	0	0	0	0	multi-exon	FALSE	canonical	3	387	junction_2	54.0525544164325	3	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGGCAGTGGGGGCTGGCTGG	NA	False	NA	-4	True	AATAAA	-19	NA	100830366	100777635	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100779587_100780303_100780417_100780711_100780755_100783899_100784113_100784490_100784631_100784716_100784812_100784989_100785043_100785526_100785663_100785889_100785989_100787148_100787233_100789276_100789325_100789433_100789528_100789619_100789650_100793562_100793623_100794247_100794341_100794429_100794589_100795732_100795885_100796029_100796125_100796418_100796501_100796658_100796755_100798816_100798916_100799485_100799631_100802059_100802211_100830081
transcript_9801.known	chr11	+	4008	22	FSM	ENSMUSG00000019302.17	ENSMUST00000044721.13	4008	22	0	0	0	0	multi-exon	FALSE	canonical	3	32	junction_19	48.1567734584863	12	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GCTGCCTGTCTCTGAGTGTG	NA	False	NA	17	True	AATAAA	-22	NA	100900277	100954545	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341_100935450_100939243_100939352_100940284_100940303_100945851_100945970_100946259_100946432_100953137
transcript_9804.nic	chr11	+	2403	17	ISM	ENSMUSG00000019302.17	ENSMUST00000044721.13	4008	22	-16	18893	-16	0	5prime_fragment	FALSE	canonical	3	143	junction_12	25.0571222409917	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTTTCCTGGTCGTGATTTTT	NA	False	NA	NA	False	AATAAA	-16	NA	100900261	100935652	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092_100918220_100920001_100920085_100921235_100921330_100924726_100924940_100927547_100927699_100928984_100929125_100929515_100929674_100930646_100930738_100933775_100933895_100934616_100934834_100935341
transcript_9806.nic	chr11	+	933	7	ISM	ENSMUSG00000019302.17	ENSMUST00000154896.8	4162	16	-16	17323	-16	0	5prime_fragment	FALSE	canonical	3	165	junction_5	19.5256241897666	11	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACTTGAAAGCTTACTCCCC	NA	False	NA	NA	False	ATTAAA	-20	NA	100900261	100918326	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_100900391_100902582_100902764_100909389_100909469_100911298_100911397_100911879_100912009_100917506_100917590_100918092
transcript_9808.known	chr11	+	2560	6	FSM	ENSMUSG00000001751.10	ENSMUST00000001802.10	2560	6	0	0	0	0	multi-exon	FALSE	canonical	3	15	junction_1	1.93907194296653	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GTATTGGACGTTGCTGGCAT	NA	False	NA	23	True	AATAAA	-33	NA	100960837	100968498	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_100961328_100961905_100962054_100962721_100962869_100963042_100963129_100964672_100964930_100967066
transcript_9812.known	chr11	+	2138	10	FSM	ENSMUSG00000001755.13	ENSMUST00000001806.10	2138	10	0	0	0	0	multi-exon	FALSE	canonical	3	106	junction_1	26.2908705931015	86	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3511	False	NA	25	True	ATTAAA	-16	NA	100973390	100977445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_100973517_100973824_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
transcript_9814.nic	chr11	+	1413	9	NIC	ENSMUSG00000001755.13	novel	2138	10	NA	NA	17	0	combination_of_known_junctions	FALSE	canonical	3	28	junction_1	48.4418143239908	85	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3528	False	NA	25	True	ATTAAA	-16	NA	100973407	100977445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_100973517_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
transcript_9815.known	chr11	+	2386	9	FSM	ENSMUSG00000001755.13	ENSMUST00000107308.4	2386	9	0	0	0	0	multi-exon	FALSE	canonical	3	125	junction_1	20.9388992069784	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TGCTTGTGTGGTTTTCTGTT	3571	False	NA	25	True	ATTAAA	-16	NA	100973450	100977445	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_100974533_100975141_100975357_100975580_100975713_100975833_100976024_100976107_100976173_100976361_100976447_100976615_100976714_100976823_100976971_100977073
transcript_9817.known	chr11	+	1826	8	FSM	ENSMUSG00000017801.16	ENSMUST00000107302.8	1826	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	91.1912097446562	136	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTTAAGTCCTTGT	8223	False	NA	18	True	AATAAA	-22	NA	100978102	100983033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_100978194_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
transcript_9820.known	chr11	+	679	8	FSM	ENSMUSG00000017801.16	ENSMUST00000149411.8	679	8	0	0	0	0	multi-exon	FALSE	canonical	2	2	junction_1	90.5047072854021	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATCGGTGTCCTTCATCAGTT	8236	False	NA	NA	False	NA	NA	NA	100978115	100981952	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_100978141_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
transcript_9822.known	chr11	+	1965	8	FSM	ENSMUSG00000017801.16	ENSMUST00000017945.15	1965	8	0	0	0	0	multi-exon	FALSE	canonical	3	155	junction_1	39.4052726193346	46	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTTAAGTCCTTGT	8246	False	NA	18	True	AATAAA	-22	NA	100978125	100983033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_100978356_100978579_100978617_100979061_100979152_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
transcript_9824.known	chr11	-	1291	8	FSM	ENSMUSG00000019303.15	ENSMUST00000019447.15	1291	8	0	0	0	0	multi-exon	FALSE	canonical	3	316	junction_7	41.1021624139417	137	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TGCTGCCTTTGCCTTTGGGA	NA	False	NA	NA	False	GATAAA	-14	NA	100986262	100982648	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983_100986085_100986168
transcript_9825.nic	chr11	-	1008	8	NIC	ENSMUSG00000019303.15	novel	1291	8	NA	NA	-4	0	combination_of_known_junctions	FALSE	canonical	3	23	junction_5	137.651141421689	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCCAGATATCAAACCTGG	NA	False	NA	4	True	TATAAA	-30	NA	100986266	100982957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984641_100985761_100985852_100985983_100986085_100986168
transcript_9831.known	chr11	+	1736	7	FSM	ENSMUSG00000017801.16	ENSMUST00000107303.10	1736	7	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	122.609701446863	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GGATTGTTTTAAGTCCTTGT	8223	False	NA	18	True	AATAAA	-22	NA	100978102	100983033	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_100978194_100978579_100978617_100979423_100979531_100979758_100979859_100980044_100980145_100980493_100980696_100981934
transcript_9837.known	chr11	-	1030	7	FSM	ENSMUSG00000019303.15	ENSMUST00000126386.8	1030	7	0	0	0	0	multi-exon	FALSE	canonical	3	369	junction_2	24.7571538482651	45	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTCCCAGATATCAAACCTGG	NA	False	NA	4	True	TATAAA	-30	NA	100986226	100982957	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100983283_100983357_100983418_100983549_100983604_100983688_100983835_100984506_100984619_100985761_100985852_100985983
transcript_9839.known	chr11	-	3165	9	FSM	ENSMUSG00000017802.15	ENSMUST00000017946.6	3165	9	0	0	0	0	multi-exon	FALSE	canonical	3	80	junction_5	11.6162601554889	26	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CTGCTGTTTCGTTGTGTACT	9795	False	NA	1	True	AATAAA	-29	NA	101010719	100987338	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100989447_100989833_100989967_100990498_100990582_100991747_100991886_100992831_100992917_100993708_100993836_100994715_100994747_100997132_100997240_101010366
transcript_9843.known	chr11	-	3229	8	FSM	ENSMUSG00000017802.15	ENSMUST00000154513.8	3229	8	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_5	32.1222155944119	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	ATTTGTCAATTGTTATTTTT	9795	False	NA	NA	False	CATAAA	-22	NA	101010719	100987147	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_100989447_100989833_100989967_100990498_100990582_100991747_100991886_100992831_100992917_100994715_100994747_100997132_100997240_101010366
transcript_9845.known	chr11	+	1802	11	FSM	ENSMUSG00000035198.10	ENSMUST00000043680.9	1802	11	0	0	0	0	multi-exon	TRUE	canonical	3	373	junction_8	104.461715475096	461	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCACCCCCCGGTCTCTGAA	1230	False	NA	16	True	AATAAA	-19	NA	101010763	101017245	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101011069_101011372_101011486_101011656_101011825_101013498_101013568_101014239_101014320_101014738_101014866_101015058_101015146_101015248_101015399_101015795_101015949_101016028_101016191_101016857
transcript_9846.known	chr11	+	1754	11	FSM	ENSMUSG00000045007.10	ENSMUST00000043654.10	1754	11	0	0	0	0	multi-exon	TRUE	canonical	2	5	junction_5	90.3044295702044	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCAGAGCTTTGTTTGTGACT	1651	False	NA	NA	False	AATAAA	-22	NA	101046732	101052613	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101046995_101047273_101047387_101047578_101047747_101048277_101048347_101048608_101048689_101049834_101049962_101050882_101050970_101051072_101051223_101051619_101051773_101051852_101052015_101052230
transcript_9847.known	chr11	-	4193	21	FSM	ENSMUSG00000006920.15	ENSMUST00000107285.8	4193	21	0	0	0	0	multi-exon	FALSE	canonical	3	124	junction_20	14.6399282785128	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ATTTTGGCAAGTTGTGTCCT	2618	False	NA	-8	True	AATAAA	-14	NA	101117276	101081941	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_101083826_101084044_101084130_101084551_101084633_101085293_101085376_101085711_101085808_101086344_101086524_101090083_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108190_101109479_101109547_101117221
transcript_9848.nnic	chr11	-	2077	16	NNC	ENSMUSG00000006920.15	novel	3636	15	NA	NA	-6	487	at_least_one_novel_splicesite	FALSE	canonical	2	3	junction_1	39.6329828972452	3	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GATACATGGGTTGAGTGTGG	2599	False	NA	NA	False	NA	NA	NA	101117295	101088976	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_101089249_101090083_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108190_101109479_101109547_101117221
transcript_9849.known	chr11	-	3636	15	FSM	ENSMUSG00000006920.15	ENSMUST00000100417.3	3636	15	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_13	38.227634517667	2	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	TCATATTAGCTGCAGTTTAT	2642	False	NA	NA	False	GATAAA	-21	NA	101117252	101088214	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_101090210_101090771_101090813_101091661_101091754_101094080_101094278_101094586_101094768_101098163_101098256_101098947_101099112_101100205_101100309_101101372_101101550_101104549_101104671_101106008_101106129_101107820_101107950_101108068_101108195_101109479_101109547_101117221
transcript_9852.known	chr11	+	1478	8	FSM	ENSMUSG00000001240.14	ENSMUST00000128260.9	1478	8	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_2	550.818278119203	974	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGTCGGCCTGTTACTACTG	NA	False	NA	17	True	ATTAAA	-14	NA	101137216	101150372	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101137399_101137880_101137971_101144429_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149735
transcript_9853.known	chr11	+	1178	4	FSM	ENSMUSG00000001240.14	ENSMUST00000129680.8	1178	4	0	0	0	0	multi-exon	FALSE	canonical	2	5	junction_2	6.16441400296898	6	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TATTGCCTTCCTAGTGGGGT	NA	False	NA	17	True	AATAAA	-18	NA	101136853	101139076	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101137399_101137880_101137971_101138411_101138515_101138636
transcript_9854.known	chr11	+	615	6	FSM	ENSMUSG00000078656.12	ENSMUST00000007533.15	615	6	0	0	0	0	multi-exon	FALSE	canonical	3	39	junction_5	475.771541813926	22	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTTTTTTCTGTGACTCTTTA	NA	False	NA	1	True	AGTAAA	-17	NA	101144532	101148875	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101148726
transcript_9855.known	chr11	+	1220	6	FSM	ENSMUSG00000078656.12	ENSMUST00000100414.12	1220	6	0	0	0	0	multi-exon	FALSE	canonical	3	11	junction_5	486.921595331322	14	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACTGTCGGCCTGTTACTACT	NA	False	NA	16	True	ATTAAA	-13	NA	101144554	101150371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149595
transcript_9856.known	chr11	+	1106	6	FSM	ENSMUSG00000078656.12	ENSMUST00000042477.13	1106	6	0	0	0	0	multi-exon	FALSE	canonical	3	1136	junction_3	45.4682306671372	996	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCGGCCTGTTACTACTGCTG	NA	False	NA	20	True	ATTAAA	-17	NA	101144532	101150375	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101144634_101144856_101145003_101145768_101145823_101146834_101146924_101147703_101147780_101149735
transcript_9857.known	chr11	+	876	6	FSM	ENSMUSG00000078656.12	ENSMUST00000107280.11	876	6	0	0	0	0	multi-exon	FALSE	canonical	3	35	junction_2	474.329252734849	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CACACCCACCTACATGCGCC	NA	False	NA	NA	False	TATAAA	-35	NA	101144560	101150149	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101144634_101144856_101145003_101145744_101145823_101146834_101146924_101147703_101147780_101149735
transcript_9859.nnic	chr11	-	2009	12	NNC	ENSMUSG00000035086.14	novel	4365	12	NA	NA	0	0	at_least_one_novel_splicesite	FALSE	canonical	3	28	junction_8	132.301621336492	51	NA	NA	TRUE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193112	101179087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101186405_101187083_101187143_101189834_101189903_101192553_101192683_101192957
transcript_986.known	chr1	+	3769	7	FSM	ENSMUSG00000026036.18	ENSMUST00000087521.13	3769	7	0	0	0	0	multi-exon	FALSE	canonical	3	215	junction_3	28.6787765119473	165	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	50	TAGAAAATGTCAATGTACAA	NA	False	NA	NA	False	AAGAAA	-2	NA	58484309	58502615	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_+_58484794_58486792_58487249_58489545_58489709_58491247_58491375_58494755_58494895_58496938_58497023_58500299
transcript_9860.known	chr11	-	2123	12	FSM	ENSMUSG00000035086.14	ENSMUST00000041403.12	2123	12	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_8	185.08889979263	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193112	101179087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185791_101185991_101186120_101186258_101186359_101186451_101187019_101187143_101189834_101189903_101192553_101192683_101192957
transcript_9861.known	chr11	-	4365	12	FSM	ENSMUSG00000035086.14	ENSMUST00000130916.8	4365	12	0	0	0	0	multi-exon	FALSE	canonical	3	365	junction_8	49.9747043451001	284	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTGGTTTCCAATTTTCTAGT	NA	False	NA	NA	False	AATAAA	-17	NA	101193112	101176777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101186451_101187083_101187143_101189834_101189903_101192553_101192683_101192957
transcript_9874.known	chr11	-	2662	11	FSM	ENSMUSG00000035086.14	ENSMUST00000122817.8	2662	11	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_7	42.6812605249658	50	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193086	101179087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101184974_101185795_101185991_101186120_101186258_101186359_101187143_101189834_101189903_101192553_101192683_101192957
transcript_9880.known	chr11	-	3476	10	FSM	ENSMUSG00000035086.14	ENSMUST00000139997.9	3476	10	0	0	0	0	multi-exon	FALSE	canonical	3	416	junction_6	43.6603048800878	19	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CCAAGTGGTACGCCTGTATG	NA	False	NA	-2	True	AATAAA	-25	NA	101193078	101179087	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_101179808_101180608_101180752_101181264_101181326_101182208_101182359_101184826_101185991_101186120_101186258_101186359_101187143_101189834_101189903_101192553_101192683_101192957
transcript_9883.known	chr11	-	725	4	FSM	ENSMUSG00000035086.14	ENSMUST00000170502.2	725	4	0	0	0	0	multi-exon	FALSE	canonical	3	422	junction_1	27.6445694888204	7	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTCCTTCCTTTTTGCTGT	NA	False	NA	NA	False	ATTAAA	-16	NA	101193075	101186732	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_101187143_101189834_101189903_101192553_101192683_101192957
transcript_9884.known	chr11	-	886	2	FSM	ENSMUSG00000017188.4	ENSMUST00000017332.4	886	2	0	0	0	0	multi-exon	FALSE	canonical	3	1870	junction_1	0	143	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCCAAGCTAGTGTGTGGGGG	5502	False	NA	-5	True	AATAAA	-20	NA	101169940	101168793	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_101169279_101169539
transcript_9885.known	chr11	+	2335	7	FSM	ENSMUSG00000078653.5	ENSMUST00000103107.5	2335	7	0	0	0	0	multi-exon	FALSE	canonical	2	14	junction_6	3.09120616516523	2	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ATTTTGGTATTGTAAACATG	NA	False	NA	9	True	AATAAA	-14	NA	101169921	101179527	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101170307_101174217_101174294_101174546_101174719_101175585_101175749_101176490_101176636_101177679_101177777_101178230
transcript_9890.known	chr11	+	2664	11	FSM	ENSMUSG00000078652.10	ENSMUST00000019470.14	2664	11	0	0	0	0	multi-exon	FALSE	canonical	3	1173	junction_6	119.560068584791	373	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGGTGCTGTACTCTG	NA	False	NA	34	True	ATTAAA	-35	NA	101207038	101214363	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101207315_101208006_101208040_101208154_101208218_101208448_101208554_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
transcript_9896.nnic	chr11	+	2566	10	NIC	ENSMUSG00000078652.10	novel	2664	11	NA	NA	-7	0	combination_of_known_splicesites	FALSE	canonical	3	51	junction_3	427.085471539363	48	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	GACCCTGGTGCTGTACTCTG	NA	False	NA	34	True	ATTAAA	-35	NA	101207031	101214363	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_101207315_101208006_101208040_101208154_101208218_101210281_101210331_101210737_101210851_101211036_101211106_101211222_101211291_101211386_101211442_101211552_101211640_101212617
transcript_99.known	SIRV3	+	2373	3	FSM	SIRV3A	SIRV306	2373	3	0	0	0	0	multi-exon	FALSE	canonical	3	759	junction_2	1218.5	269	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	45	GTACCTAACAGTAAAAGAGT	NA	False	NA	NA	False	NA	NA	NA	1944	8292	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_SIRV3_+_2006_4003_4081_6057
transcript_9900.known	chr11	-	1516	12	FSM	ENSMUSG00000075528.14	ENSMUST00000070395.9	1516	12	0	0	0	0	multi-exon	FALSE	canonical	3	448	junction_11	68.1448384565145	459	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CATGGTTGTATACTGCCATT	NA	False	NA	-21	True	AGTAAA	-16	NA	101308441	101297664	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_101297851_101298956_101299052_101300478_101300534_101300939_101301032_101301179_101301247_101301586_101301718_101301908_101302026_101302119_101302277_101302765_101302824_101304762_101304923_101307928_101308061_101308175
transcript_9907.known	chr11	-	853	7	FSM	ENSMUSG00000097487.8	ENSMUST00000107252.9	853	7	0	0	0	0	multi-exon	FALSE	canonical	1	2	junction_6	3.45205252953466	7	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTTCCCTTCCCTTCCTGTA	NA	False	NA	-10	True	AATAAA	-14	NA	101315495	101309637	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_101310013_101310500_101310555_101312690_101312781_101314605_101314705_101314802_101314870_101314980_101315095_101315441
transcript_9910.known	chr11	+	3223	5	FSM	ENSMUSG00000035007.6	ENSMUST00000040561.6	3223	5	0	0	0	0	multi-exon	FALSE	canonical	3	47	junction_3	4.27200187265877	5	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTCCTCTGCACTCTCTAAG	NA	False	NA	35	True	AATAAA	-39	NA	101315910	101326499	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101316437_101320277_101320437_101322173_101322373_101322907_101323025_101324277
transcript_9914.known	chr11	-	544	2	FSM	ENSMUSG00000075528.14	ENSMUST00000125472.2	544	2	0	0	0	0	multi-exon	FALSE	canonical	3	448	junction_1	0	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	CTGTGAAGGGAAGGGATGAG	NA	False	NA	NA	False	NA	NA	NA	101308232	101307573	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_101308061_101308175
transcript_9916.known	chr11	+	614	5	FSM	ENSMUSG00000063316.14	ENSMUST00000077856.13	614	5	0	0	0	0	multi-exon	FALSE	canonical	3	8302	junction_4	1985.8892844265	6304	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	2241	False	NA	62	True	ATTAAA	-18	NA	101333123	101336355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101333283_101333548_101333632_101334326_101334497_101336045_101336157_101336264
transcript_9920.known	chr11	+	536	3	FSM	ENSMUSG00000063316.14	ENSMUST00000139939.2	536	3	0	0	0	0	multi-exon	FALSE	canonical	3	8909	junction_1	1362	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CGTTTTTGTTTGTCTTTTAG	2381	False	NA	NA	False	NA	NA	NA	101333263	101334760	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101333283_101333548_101333632_101334326
transcript_9923.known	chr11	+	732	4	FSM	ENSMUSG00000063316.14	ENSMUST00000107249.8	732	4	0	0	0	0	multi-exon	FALSE	canonical	3	8302	junction_3	2031.83972465022	762	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	TACAAGTGTCTGCCTATTGC	2389	False	NA	62	True	ATTAAA	-18	NA	101333271	101336355	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101333632_101334326_101334497_101336045_101336157_101336264
transcript_9924.known	chr11	+	1362	7	FSM	ENSMUSG00000010358.14	ENSMUST00000010502.13	1362	7	0	0	0	0	multi-exon	FALSE	canonical	3	40	junction_3	8.33499983336666	66	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	30	ACCACCCATTCTCCAGCAAC	981	False	NA	NA	False	NA	NA	NA	101339232	101349524	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101339449_101347391_101347491_101348015_101348164_101348241_101348349_101348445_101348633_101348716_101348824_101349026
transcript_9926.nic	chr11	+	1365	6	ISM	ENSMUSG00000010358.14	ENSMUST00000010502.13	1362	7	-34	234	-34	0	intron_retention	FALSE	canonical	3	40	junction_3	7.94984276574072	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTGTGATGGTCTTCTT	947	False	NA	5	True	NA	NA	NA	101339198	101349290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	ISM_chr11_+_101339449_101347391_101347491_101348015_101348164_101348241_101348349_101348445_101348633_101348716
transcript_9928.known	chr11	+	1020	5	FSM	ENSMUSG00000010358.14	ENSMUST00000131024.2	1020	5	0	0	0	0	multi-exon	FALSE	canonical	1	3	junction_2	22.7087538187369	1	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	5	CCTGGTGTGATGGTCTTCTT	1144	False	NA	5	True	NA	NA	NA	101339395	101349290	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101339449_101347391_101347491_101348241_101348349_101348445_101348633_101348716
transcript_993.known	chr1	-	1363	7	FSM	ENSMUSG00000026035.16	ENSMUST00000117069.8	1363	7	0	0	0	0	multi-exon	FALSE	canonical	3	14	junction_6	68.4505092911822	13	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTGTCCTTTTTTTTA	NA	False	NA	1	True	AATAGA	-28	NA	58484588	58470152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58483969
transcript_9930.nnic	chr11	-	2280	7	NNC	ENSMUSG00000034993.8	novel	2766	6	NA	NA	-23	7	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_1	126.514491923521	10	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAGATGTTGTATCTGAGAG	NA	False	NA	-4	True	AATAAA	-22	NA	101357079	101349563	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_-_101349909_101350424_101351103_101351202_101351445_101353023_101353114_101353215_101353387_101353734_101353943_101356533
transcript_9931.known	chr11	+	1578	6	FSM	ENSMUSG00000001313.13	ENSMUST00000153185.8	1578	6	0	0	0	0	multi-exon	FALSE	canonical	3	12	junction_1	71.7568115233669	29	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGACTTAGTTTTGTT	7809	False	NA	21	True	AATAAA	-21	NA	101355824	101362679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101355971_101356456_101356760_101359758_101359847_101360838_101360949_101361543_101361679_101361883
transcript_9933.known	chr11	-	2766	6	FSM	ENSMUSG00000034993.8	ENSMUST00000040430.8	2766	6	0	0	0	0	multi-exon	FALSE	canonical	3	320	junction_5	13.7462722219517	114	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	20	GTCCTGACCAGATGTTGTAT	NA	False	NA	-11	True	AATAAA	-15	NA	101357056	101349570	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_101351103_101351202_101351445_101353023_101353114_101353215_101353387_101353734_101353943_101356533
transcript_9934.nnic	chr11	+	1290	5	NIC	ENSMUSG00000001313.13	novel	1578	6	NA	NA	-15	0	combination_of_known_splicesites	FALSE	canonical	3	4	junction_1	68.3245929369506	15	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGACTTAGTTTTGTT	7794	False	NA	21	True	AATAAA	-21	NA	101355809	101362679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_+_101355971_101359758_101359847_101360838_101360949_101361543_101361679_101361883
transcript_9935.known	chr11	+	831	5	FSM	ENSMUSG00000001313.13	ENSMUST00000134980.2	831	5	0	0	0	0	multi-exon	FALSE	canonical	3	18	junction_1	62.3097103186975	9	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TCCTCCCGATCTTCTGAGCG	8294	False	NA	NA	False	NA	NA	NA	101356309	101361931	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101356760_101359758_101359847_101360838_101360949_101361543_101361679_101361883
transcript_9936.known	chr11	+	1394	5	FSM	ENSMUSG00000001313.13	ENSMUST00000001347.7	1394	5	0	0	0	0	multi-exon	FALSE	canonical	3	109	junction_1	23.8051990119806	30	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	GCTATGGACTTAGTTTTGTT	NA	False	NA	21	True	AATAAA	-21	NA	101359000	101362679	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101359266_101359758_101359847_101360838_101360949_101361543_101361679_101361883
transcript_9938.known	chr11	-	6572	23	FSM	ENSMUSG00000017146.13	ENSMUST00000017290.11	6572	23	0	0	0	0	multi-exon	FALSE	canonical	3	266	junction_5	36.2819537137853	12	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	40	TTTTGACAAAGAATGACTGA	NA	False	NA	-11	True	AATAAA	-15	NA	101442705	101379589	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_101380739_101382684_101382746_101383006_101383081_101384377_101384433_101388759_101388841_101392817_101392859_101393306_101393385_101396142_101396231_101398775_101399057_101400746_101400926_101403545_101403676_101408096_101408269_101413257_101413329_101414150_101417466_101418826_101418904_101420616_101420663_101421817_101421921_101422845_101422986_101424764_101424854_101426353_101426432_101430806_101430861_101439840_101439940_101442594
transcript_9939.known	chr11	+	4654	24	FSM	ENSMUSG00000017119.21	ENSMUST00000103098.9	4654	24	0	0	0	0	multi-exon	TRUE	canonical	3	112	junction_17	38.3552196362625	27	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTTTATTGTTTAA	774	False	NA	21	True	AATAAA	-24	NA	101443479	101472777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
transcript_994.known	chr1	-	1033	7	FSM	ENSMUSG00000026035.16	ENSMUST00000114348.8	1033	7	0	0	0	0	multi-exon	FALSE	canonical	3	104	junction_6	35.853482707015	55	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTGAGTGTCCTTTTTTTTA	NA	False	NA	1	True	AATAGA	-28	NA	58484593	58470152	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484304
transcript_9940.known	chr11	+	4344	23	FSM	ENSMUSG00000017119.21	ENSMUST00000107208.8	4344	23	0	0	0	0	multi-exon	FALSE	canonical	3	41	junction_22	52.5711049377904	25	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTTTATTGTTTAA	978	False	NA	21	True	AATAAA	-24	NA	101443683	101472777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463287_101463399_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101471410
transcript_9941.known	chr11	+	4339	23	FSM	ENSMUSG00000017119.21	ENSMUST00000107213.8	4339	23	0	0	0	0	multi-exon	FALSE	canonical	3	94	junction_16	37.5030852725303	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CCAAGCTGTTTATTGTTTAA	978	False	NA	21	True	AATAAA	-24	NA	101443683	101472777	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101443782_101444813_101444925_101446635_101446702_101447000_101447118_101450344_101450408_101451258_101451278_101453122_101453146_101455454_101455653_101456529_101456608_101457021_101457237_101457920_101458089_101459224_101459435_101460081_101460242_101460323_101460615_101462109_101462260_101462727_101462804_101463633_101463799_101463928_101464004_101465824_101466243_101467128_101467236_101468019_101468078_101468757_101468864_101471410
transcript_9946.known	chr11	+	2304	9	FSM	ENSMUSG00000034947.14	ENSMUST00000039581.14	2304	9	0	0	0	0	multi-exon	FALSE	canonical	3	13	junction_1	4.99843725578305	4	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	30	GGAAAAGGGGCATTCCTGGA	3688	False	NA	NA	False	AATAAA	-17	NA	101473067	101482614	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101473152_101473450_101473531_101474383_101474611_101475271_101475336_101477064_101477219_101479678_101479820_101479923_101479968_101480760_101480815_101481158
transcript_9947.known	chr11	+	191	1	FSM	ENSMUSG00000118859.1	ENSMUST00000239995.1	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TTGGGGTTCCTAATGTTGGT	NA	False	NA	NA	False	NA	NA	NA	101495675	101495866	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101495700_101495900
transcript_9948.nnic	chr11	+	872	5	NNC	ENSMUSG00000086617.2	novel	472	3	NA	NA	-62	682	at_least_one_novel_splicesite	TRUE	non_canonical	0	0	junction_4	9.83298021964857	36	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	TGTAATGCCTGTGGGGTTTT	NA	False	NA	7	True	AAAACA	-27	NA	101501377	101507464	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr11_+_101501538_101501917_101502004_101506606_101506824_101507017_101507086_101507123
transcript_995.known	chr1	-	896	7	FSM	ENSMUSG00000026035.16	ENSMUST00000081677.12	896	7	0	0	0	0	multi-exon	FALSE	canonical	3	28	junction_6	63.3151289626386	20	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGAGTGTCCTTTTTT	NA	False	NA	-2	True	AATAGA	-25	NA	58484645	58470155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484490
transcript_9958.known	chr11	+	1124	7	FSM	ENSMUSG00000010362.10	ENSMUST00000010506.10	1124	7	0	0	0	0	multi-exon	FALSE	canonical	3	866	junction_2	120.614284210269	1118	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	TAGTGTGTGGTTTGGGTCCC	NA	False	NA	29	True	AATAAA	-28	NA	101518767	101526926	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101518891_101519098_101519279_101521063_101521187_101521645_101521806_101524627_101524727_101525613_101525700_101526573
transcript_996.nnic	chr1	-	870	7	NNC	ENSMUSG00000026035.16	novel	896	7	NA	NA	-9	0	at_least_one_novel_splicesite	FALSE	canonical	3	19	junction_6	66.6149799636355	17	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGAGTGTCCTTTTTT	NA	False	NA	-2	True	AATAGA	-25	NA	58484654	58470155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NNC_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484525
transcript_997.nic	chr1	-	823	7	NIC	ENSMUSG00000026035.16	novel	896	7	NA	NA	-5	0	combination_of_known_junctions	FALSE	canonical	3	36	junction_6	60.3869467131212	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	15	ACATGTGAGTGTCCTTTTTT	NA	False	NA	-2	True	AATAGA	-25	NA	58484650	58470155	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr1_-_58470490_58473489_58473609_58477502_58477571_58480001_58480096_58481683_58481759_58483747_58483799_58484568
transcript_9979.known	chr11	+	191	1	FSM	ENSMUSG00000119776.1	ENSMUST00000240535.1	191	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	20	CTGGGGAGTAAAGTTGGTTT	NA	False	NA	NA	False	NA	NA	NA	101518191	101518382	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101518200_101518400
transcript_9980.known	chr11	+	1382	2	FSM	ENSMUSG00000034936.3	ENSMUST00000039388.3	1382	2	0	0	0	0	multi-exon	FALSE	canonical	3	45	junction_1	0	42	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	CTTGTTTTGATCTGGTAACT	2550	False	NA	NA	False	ATTAAA	-18	NA	101556366	101558658	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101556464_101557373
transcript_9981.known	chr11	+	4325	23	FSM	ENSMUSG00000034931.16	ENSMUST00000039152.14	4325	23	0	0	0	0	multi-exon	FALSE	canonical	3	151	junction_7	24.6553097226675	14	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	25	CAATGGTTTATTATGACTTT	NA	False	NA	26	True	NA	NA	NA	101623775	101658184	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101624015_101624981_101625068_101626203_101626277_101626634_101626721_101628482_101628593_101628955_101629388_101630529_101630675_101631488_101631693_101632326_101632415_101633901_101634000_101635931_101636080_101640710_101640893_101641703_101641899_101642836_101643023_101643110_101643322_101643973_101644156_101645557_101645699_101648418_101648575_101653034_101653173_101654722_101654852_101654970_101655168_101655603_101655784_101657465
transcript_9984.known	chr11	+	1184	4	FSM	ENSMUSG00000071818.10	ENSMUST00000123249.2	1184	4	0	0	0	0	multi-exon	FALSE	canonical	0	0	junction_1	0.471404520791032	1	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	15	AATTTGGACCTTGGGTTTTT	NA	False	NA	NA	False	NA	NA	NA	101843246	101851399	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_101843306_101846520_101846691_101846876_101846928_101850495
transcript_9985.known	chr11	-	4212	3	FSM	ENSMUSG00000003518.14	ENSMUST00000003612.13	4212	3	0	0	0	0	multi-exon	FALSE	canonical	3	8	junction_1	3.5	6	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	5	GACGTCTGTTTTGTGTTTCC	NA	False	NA	NA	False	AATAAA	-17	NA	101875625	101861968	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_101865766_101872442_101872670_101875437
transcript_9987.known	chr11	+	569	1	FSM	ENSMUSG00000082045.5	ENSMUST00000120901.2	569	1	0	0	0	0	mono-exon	FALSE	NA	NA	NA	NA	NA	1	NA	NA	NA	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	35	AATTCCACTTCTTGGCAAAA	NA	False	NA	NA	False	NA	NA	NA	102014897	102015466	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_102014900_102015500
transcript_9988.known	chr11	+	2028	7	FSM	ENSMUSG00000048217.12	ENSMUST00000055409.6	2028	7	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_2	3.13138237134266	5	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTGTCTCAAAAACCATC	NA	False	NA	12	True	NA	NA	NA	102036374	102040303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_102036818_102037315_102037591_102037688_102037903_102038189_102038371_102038635_102038808_102038917_102039101_102039743
transcript_9989.known	chr11	+	1709	6	FSM	ENSMUSG00000048217.12	ENSMUST00000147252.2	1709	6	0	0	0	0	multi-exon	FALSE	canonical	3	17	junction_1	3.26190128606002	4	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	35	CACTTGTCTCAAAAACCATC	NA	False	NA	12	True	NA	NA	NA	102037191	102040303	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_102037591_102037688_102037903_102038189_102038371_102038635_102038808_102038917_102039101_102039743
transcript_9990.nic	chr11	-	1647	4	NIC	ENSMUSG00000020921.7	novel	1574	4	NA	NA	-9	0	combination_of_known_junctions	FALSE	canonical	3	11	junction_3	131.230924539742	31	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTTTGCTTCTGTCT	4456	False	NA	0	True	AATAAA	-16	NA	102047239	102043371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	NIC_chr11_-_102044421_102045382_102045530_102046549_102046731_102046969
transcript_9991.known	chr11	-	1574	4	FSM	ENSMUSG00000020921.7	ENSMUST00000021296.7	1574	4	0	0	0	0	multi-exon	FALSE	canonical	3	250	junction_3	22.1710521977545	213	NA	NA	FALSE	0	NA	NA	C	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTGTGTCTTTGCTTCTGTCT	4465	False	NA	0	True	AATAAA	-16	NA	102047230	102043371	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102044421_102045382_102045530_102046549_102046731_102047033
transcript_9992.known	chr11	-	2256	5	FSM	ENSMUSG00000020922.12	ENSMUST00000021297.6	2256	5	0	0	0	0	multi-exon	FALSE	canonical	3	919	junction_1	21.856063231973	179	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	10	CTGATGTCTCAGGTTTGTGC	6356	False	NA	-1	True	AATAAA	-23	NA	102076122	102053322	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_-_102054994_102056185_102056313_102057912_102058023_102073683_102073818_102075908
transcript_9998.known	chr11	+	1573	6	FSM	ENSMUSG00000034793.16	ENSMUST00000078975.8	1573	6	0	0	0	0	multi-exon	TRUE	canonical	3	149	junction_4	4.31740662898458	135	NA	NA	FALSE	0	NA	NA	A	non_coding	NA	NA	NA	NA	NA	NA	NA	0	TTCTTTTCTTGTCTGTGCTC	NA	False	NA	5	True	AATAAA	-19	NA	102080494	102084907	ES_captrap_pacbio	iso_detect_ref_spbu_long_captrap_pacbio	FSM_chr11_+_102080970_102082860_102082968_102083298_102083390_102083574_102083694_102083910_102084053_102084268
